BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038184
(121 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGE 64
VAT +AARGLDI +V+ VIN+ P E+YVHRIGRTG+ G G++ F N + +
Sbjct: 101 VATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKD 160
Query: 65 LVNVLREARQVVPDAL 80
L+++L EA+Q VP L
Sbjct: 161 LLDLLVEAKQEVPSWL 176
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGE 64
VAT +AARGLDI +V+ VIN+ P E+YVHRIGRTG+ G G++ F N + +
Sbjct: 331 VATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKD 390
Query: 65 LVNVLREARQVVPDAL 80
L+++L EA+Q VP L
Sbjct: 391 LLDLLVEAKQEVPSWL 406
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFL-TNHNK 59
M + +AT +A+RGLDI +++ VINY P +DYVHRIGRTG+ G G + F ++
Sbjct: 351 MKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDR 410
Query: 60 ALAGELVNVLREARQVVPDAL 80
A+A +LV +L + Q VPD L
Sbjct: 411 AIAADLVKILEGSGQTVPDFL 431
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 71.6 bits (174), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTN-HNKALAG 63
VATD+A++GLD P ++ VINY P E+YVHRIGRTG +G G++ F+ ++++
Sbjct: 109 VATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLM 168
Query: 64 ELVNVLREARQVVPDAL 80
+L +L EA+Q VP L
Sbjct: 169 DLKALLLEAKQKVPPVL 185
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 42/61 (68%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGE 64
VATD+AARG+DI ++ +VINY PL E YVHR GRTG+AG KG + F+T K +
Sbjct: 90 VATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLAD 149
Query: 65 L 65
+
Sbjct: 150 I 150
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound
To Regulator Of Ribonuclease Activity A (Rraa)
Length = 170
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGE 64
VATD+AARG+DIPDV V N+ P + + Y+HRIGRT +AG+KG + + H+ L G+
Sbjct: 85 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 144
Query: 65 LVNVLRE 71
+ + E
Sbjct: 145 VGRYIEE 151
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 67.8 bits (164), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/70 (44%), Positives = 46/70 (65%), Gaps = 7/70 (10%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGE 64
++TD+ ARGLD+P V ++INY P E Y+HRIGR+G+ G+KGV+ F+ N +
Sbjct: 295 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDD------ 348
Query: 65 LVNVLREARQ 74
+ VLR+ Q
Sbjct: 349 -IRVLRDIEQ 357
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 67.8 bits (164), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/70 (44%), Positives = 46/70 (65%), Gaps = 7/70 (10%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGE 64
++TD+ ARGLD+P V ++INY P E Y+HRIGR+G+ G+KGV+ F+ N +
Sbjct: 295 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDD------ 348
Query: 65 LVNVLREARQ 74
+ VLR+ Q
Sbjct: 349 -IRVLRDIEQ 357
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 67.4 bits (163), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 7/70 (10%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGE 64
++TD+ ARGLD+P V ++INY P E Y+HRIGR+G+ G+KGV+ F+ N +
Sbjct: 310 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDD------ 363
Query: 65 LVNVLREARQ 74
+ +LR+ Q
Sbjct: 364 -IRILRDIEQ 372
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 67.4 bits (163), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 7/70 (10%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGE 64
++TD+ ARGLD+P V ++INY P E Y+HRIGR+G+ G+KGV+ F+ N +
Sbjct: 332 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDD------ 385
Query: 65 LVNVLREARQ 74
+ +LR+ Q
Sbjct: 386 -IRILRDIEQ 394
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 67.4 bits (163), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 7/70 (10%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGE 64
++TD+ ARGLD+P V ++INY P E Y+HRIGR+G+ G+KGV+ F+ N +
Sbjct: 332 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDD------ 385
Query: 65 LVNVLREARQ 74
+ +LR+ Q
Sbjct: 386 -IRILRDIEQ 394
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 67.4 bits (163), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 7/70 (10%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGE 64
++TD+ ARGLD+P V ++INY P E Y+HRIGR+G+ G+KGV+ F+ N +
Sbjct: 331 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDD------ 384
Query: 65 LVNVLREARQ 74
+ +LR+ Q
Sbjct: 385 -IRILRDIEQ 393
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 38/55 (69%)
Query: 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNH 57
+ + TD+A+RGLDIP VE VIN+ P Y+HRIGRTG+ G+KG + F+ N
Sbjct: 269 MLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFILNE 323
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 33/44 (75%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKG 48
+ATD+ +RG+D+ D+ VINY P E Y HRIGRTG+AGKKG
Sbjct: 293 IATDVXSRGIDVNDLNCVINYHLPQNPESYXHRIGRTGRAGKKG 336
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 6/60 (10%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTE------DYVHRIGRTGQAGKKGVSHPFLTNHN 58
+ T++ ARG+DIP V +V+NY P Y+HRIGRTG+ G+KGV+ F+ + N
Sbjct: 298 ITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 357
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 6/60 (10%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTE------DYVHRIGRTGQAGKKGVSHPFLTNHN 58
+ T++ ARG+DIP V +V+NY P Y+HRIGRTG+ G+KGV+ F+ + N
Sbjct: 298 ITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 357
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 6/60 (10%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTE------DYVHRIGRTGQAGKKGVSHPFLTNHN 58
+ T++ ARG+DIP V +V+NY P Y+HRIGRTG+ G+KGV+ F+ + N
Sbjct: 90 ITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 149
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 33/46 (71%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVS 50
V +D+ RG+DI V VVIN+ FP T E Y+HRIGR+G+ G G++
Sbjct: 313 VCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLA 358
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 6/60 (10%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTE------DYVHRIGRTGQAGKKGVSHPFLTNHN 58
+ T++ ARG+DIP V V+NY P Y+HRIGRTG+ G+KGV+ F+ + N
Sbjct: 91 ITTNVLARGIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 150
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 6/60 (10%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTE------DYVHRIGRTGQAGKKGVSHPFLTNHN 58
+ T++ ARG+DIP V V+NY P Y+HRIGRTG+ G+KGV+ F+ + N
Sbjct: 92 ITTNVLARGIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 151
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
Length = 193
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 34/51 (66%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLT 55
V TD+ RG+DI V VVIN+ FP E Y+HRIGR+G+ G G++ +T
Sbjct: 99 VCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLIT 149
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
pdb|4DB4|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
Length = 256
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGE 64
V TD+ ARG+D P+V V+ P +Y+HRIGRT ++GK+G S F+ E
Sbjct: 91 VCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRE 150
Query: 65 L 65
L
Sbjct: 151 L 151
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|D Chain D, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGE 64
V TD+ ARG+D P+V V+ P +Y+HRIGRT ++GK+G S F+ E
Sbjct: 91 VCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRE 150
Query: 65 L 65
L
Sbjct: 151 L 151
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGE 64
V TD+ ARG+D P+V V+ P +Y+HRIGRT ++GK+G S F+ E
Sbjct: 91 VCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRE 150
Query: 65 L 65
L
Sbjct: 151 L 151
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGE 64
V TD+ ARG+D P+V V+ P +Y+HRIGRT ++GK+G S F+ E
Sbjct: 346 VCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRE 405
Query: 65 L 65
L
Sbjct: 406 L 406
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGE 64
V TD+ ARG+D P+V V+ P +Y+HRIGRT ++GK+G S F+ E
Sbjct: 397 VCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRE 456
Query: 65 L 65
L
Sbjct: 457 L 457
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGE 64
V TD+ ARG+D P+V V+ P +Y+HRIGRT ++GK+G S F+ E
Sbjct: 346 VCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRE 405
Query: 65 L 65
L
Sbjct: 406 L 406
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 9/73 (12%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTT------EDYVHRIGRTGQAGKKGVSHPFLTNHN 58
V T++ ARG+D+ V +V+NY PL + Y+HRIGRTG+ G+ GVS F+ H+
Sbjct: 412 VTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFV--HD 469
Query: 59 KALAGELVNVLRE 71
K + E +N ++E
Sbjct: 470 KK-SWEEMNAIQE 481
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 6/52 (11%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPL------TTEDYVHRIGRTGQAGKKGVS 50
V T++ ARG+D+ V VVIN+ P+ E Y+HRIGRTG+ GK+G++
Sbjct: 388 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA 439
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 6/52 (11%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPL------TTEDYVHRIGRTGQAGKKGVS 50
V T++ ARG+D+ V VVIN+ P+ E Y+HRIGRTG+ GK+G++
Sbjct: 321 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA 372
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56
Length = 172
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKA 60
VAT++ RG+DI V + NY P ++ Y+HR+ R G+ G KG++ F+++ N A
Sbjct: 86 VATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDA 141
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 53.9 bits (128), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKA 60
VAT++ RG+DI V + NY P ++ Y+HR+ R G+ G KG++ F+++ N A
Sbjct: 305 VATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDA 360
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 53.9 bits (128), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKA 60
VAT++ RG+DI V + NY P ++ Y+HR+ R G+ G KG++ F+++ N A
Sbjct: 305 VATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDA 360
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 53.9 bits (128), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKA 60
VAT++ RG+DI V + NY P ++ Y+HR+ R G+ G KG++ F+++ N A
Sbjct: 304 VATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDA 359
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
Length = 175
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 6/56 (10%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTT------EDYVHRIGRTGQAGKKGVSHPFL 54
+ T++ ARG+D+ V +V+N+ P+ E Y+HRIGRTG+ GKKG++ +
Sbjct: 89 ITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMI 144
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 53.5 bits (127), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 6/52 (11%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPL------TTEDYVHRIGRTGQAGKKGVS 50
V T++ ARG+D+ V VVIN+ P+ E Y+HRIGRTG+ GK+G++
Sbjct: 358 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA 409
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 53.1 bits (126), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 6/52 (11%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPL------TTEDYVHRIGRTGQAGKKGVS 50
V T++ ARG+D+ V VVIN+ P+ E Y+HRIGRTG+ GK+G++
Sbjct: 337 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA 388
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 42/61 (68%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGE 64
++TD+ ARG+D+ V +VINY P E+Y+HRIGR G+ G+KGV+ F+TN + E
Sbjct: 85 ISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRE 144
Query: 65 L 65
L
Sbjct: 145 L 145
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 42/61 (68%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGE 64
++TD+ ARG+D+ V +VINY P E+Y+HRIGR G+ G+KGV+ F+TN + E
Sbjct: 314 ISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAXRE 373
Query: 65 L 65
L
Sbjct: 374 L 374
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/61 (47%), Positives = 42/61 (68%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGE 64
++TD+ ARG+D+ V +VINY P E+Y+HRIGR G+ G+KGV+ F+TN + E
Sbjct: 315 ISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRE 374
Query: 65 L 65
L
Sbjct: 375 L 375
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including
The C-Terminal Reca Domain, The Dimerization Domain, And
The Rna Binding Domain
Length = 300
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVH 36
VATD+AARGLDIP V++V++Y P E Y H
Sbjct: 83 VATDVAARGLDIPQVDLVVHYRMPDRAEAYQH 114
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAQ|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAR|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAR|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAS|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
pdb|3EAS|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
Length = 212
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVH 36
VATD+AARGLDIP V++V++Y P E Y H
Sbjct: 86 VATDVAARGLDIPQVDLVVHYRLPDRAEAYQH 117
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHR 37
+ TD+ ARG+D+ V +VINY P E+Y+HR
Sbjct: 309 ITTDLLARGIDVQQVSLVINYDLPTNRENYIHR 341
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHR 37
+ TD+ ARG+D+ V +VINY P E+Y+HR
Sbjct: 335 ITTDLLARGIDVQQVSLVINYDLPTNRENYIHR 367
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 33.9 bits (76), Expect = 0.026, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKG 48
VAT G+D PDV VI++S + E+Y GR G+ K
Sbjct: 322 VATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKA 365
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQ 43
VAT + GLD+P+V++V+ Y + + R GRTG+
Sbjct: 424 VATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGR 462
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 32.3 bits (72), Expect = 0.077, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAG 45
VAT G++ P+V V+++ P E Y GR G+ G
Sbjct: 291 VATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDG 331
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 32.0 bits (71), Expect = 0.083, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAG 45
VAT G++ P+V V+++ P E Y GR G+ G
Sbjct: 291 VATVAFGXGINKPNVRFVVHFDIPRNIESYYQETGRAGRDG 331
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGE 64
+AT +A G+DI +VI Y + + + I G+ +G LT++ + E
Sbjct: 457 IATSVADEGIDIAQCNLVILYEY---VGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKE 513
Query: 65 LVNVLREARQVVPDALLKFGT 85
+N+ +E +++ D++L+ T
Sbjct: 514 QINMYKE--KMMNDSILRLQT 532
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGE 64
+AT +A G+DI +VI Y + + + I G+ +G LT++ + E
Sbjct: 466 IATSVADEGIDIAQCNLVILYEY---VGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKE 522
Query: 65 LVNVLREARQVVPDALLKFGT 85
+N+ +E +++ D++L+ T
Sbjct: 523 QINMYKE--KMMNDSILRLQT 541
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGE 64
+AT +A G+DI +VI Y + + + I G+ +G LT++ + E
Sbjct: 465 IATSVADEGIDIAQCNLVILYEY---VGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKE 521
Query: 65 LVNVLREARQVVPDALLKFGT 85
+N+ +E +++ D++L+ T
Sbjct: 522 QINMYKE--KMMNDSILRLQT 540
>pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|B Chain B, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|D Chain D, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|E Chain E, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
Length = 797
Score = 28.5 bits (62), Expect = 0.96, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALA 62
L +AT +A G+DI +V+ Y + + GR AG K + +T+ + +
Sbjct: 697 LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCI---LVTSKTEVVE 753
Query: 63 GELVNVLRE 71
E N +E
Sbjct: 754 NEKCNRYKE 762
>pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I
pdb|4A2W|B Chain B, Structure Of Full-Length Duck Rig-I
Length = 936
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALA 62
L +AT +A G+DI +V+ Y + + GR AG K + +T+ + +
Sbjct: 697 LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCI---LVTSKTEVVE 753
Query: 63 GELVNVLRE 71
E N +E
Sbjct: 754 NEKCNRYKE 762
>pdb|2FZL|A Chain A, Structure Of C-Terminal Domain Of Archaeoglobus Fulgidus
Xpb
Length = 219
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGR 40
V++ + G+D+PD V + S + +Y+ R+GR
Sbjct: 164 VSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGR 199
>pdb|2FWR|A Chain A, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|B Chain B, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|C Chain C, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|D Chain D, Structure Of Archaeoglobus Fulgidis Xpb
Length = 472
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGR 40
V++ + G+D+PD V + S + +Y+ R+GR
Sbjct: 399 VSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGR 434
>pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain
pdb|4A36|A Chain A, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
pdb|4A36|B Chain B, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
Length = 556
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALA 62
L +AT +A G+DI +V+ Y + + GR AG K + +T+ + +
Sbjct: 456 LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCI---LVTSKTEVVE 512
Query: 63 GELVNVLRE 71
E N +E
Sbjct: 513 NEKCNRYKE 521
>pdb|4I1S|A Chain A, Melanoma Differentiation Associated Protein-5 Helicase
Domain Complex With Inhibitor Non-structural Protein V
Length = 243
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 3 LQVATDIAARGLDIPDVEVVINY 25
L +AT +A GLDI + +VI Y
Sbjct: 217 LLIATTVAEEGLDIKECNIVIRY 239
>pdb|3PSA|A Chain A, Classification Of A Haemophilus Influenzae Abc Transporter
Hi147071 Through Its Cognate Molybdate Periplasmic
Binding Protein Mola (Mola Bound To Tungstate)
pdb|3PSH|A Chain A, Classification Of A Haemophilus Influenzae Abc Transporter
Hi147071 Through Its Cognate Molybdate Periplasmic
Binding Protein Mola (Mola Bound To Molybdate)
Length = 326
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 15/55 (27%)
Query: 17 PDVEVVINYSFPLTTEDYVHRIG-----------RTGQAGKKGVSHPFLTNHNKA 60
PDV V NY+ + + +I RTG+ G+KG +P LT+ +KA
Sbjct: 85 PDVVFVTNYA----PSEMIKQISDVNIPVVAISLRTGEVGEKGKLNPTLTDEDKA 135
>pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain
Length = 555
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGE 64
+AT +A G+DI + +VI Y + + + I G+ + LT+ + E
Sbjct: 457 IATSVADEGIDIAECNLVILYEY---VGNVIKXIQTRGRGRARDSKCFLLTSSADVIEKE 513
Query: 65 LVNVLREARQVVPDALLKFGT 85
N ++E ++ +++L+ T
Sbjct: 514 KANXIKE--KIXNESILRLQT 532
>pdb|1F6F|A Chain A, Crystal Structure Of The Ternary Complex Between Ovine
Placental Lactogen And The Extracellular Domain Of The
Rat Prolactin Receptor
Length = 199
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 14/67 (20%)
Query: 54 LTNHNKALAGELVNVLREARQVVPDALLKFGTHVKKKESKLYGAHFREISADAPKAKKIP 113
+ N+N LAGE+VN E ++G + ESK+ H I+ KA+ I
Sbjct: 28 VANYNSKLAGEMVNRFDE----------QYGQGI-NSESKVINCHTSSITTPNSKAEAI- 75
Query: 114 FNNSDDQ 120
N++D+
Sbjct: 76 --NTEDK 80
>pdb|3IZR|EE Chain e, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 244
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 64 ELVNVLREARQVVPDALLKFGTHVKKKESKLYGAHFREISADAPKAKKI 112
ELV + REAR +K G +V + L+ R I+A PK KKI
Sbjct: 63 ELVQLKREAR-------MKGGFYVSPEAKPLFVVRIRGINAMHPKTKKI 104
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
Length = 699
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGR 40
L +AT +A GLDI + +VI Y V GR
Sbjct: 467 LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGR 504
>pdb|3F2B|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp, Mg And Zn
pdb|3F2C|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp And Mn
pdb|3F2D|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp, Mn And Zn
Length = 1041
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 12/75 (16%)
Query: 7 TDIAARGLDIPDVEVVI---------NYSFPLTTEDYVHRIGRTGQAGKK---GVSHPFL 54
T + +G +PD+++ NY+ L ED V+R G G K G +
Sbjct: 548 TFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDNVYRAGTIGTVADKTAYGFVKAYA 607
Query: 55 TNHNKALAGELVNVL 69
++HN L G ++ L
Sbjct: 608 SDHNLELRGAEIDRL 622
>pdb|3BGH|A Chain A, Crystal Structure Of Putative Neuraminyllactose-Binding
Hemagglutinin Homolog From Helicobacter Pylori
pdb|3BGH|B Chain B, Crystal Structure Of Putative Neuraminyllactose-Binding
Hemagglutinin Homolog From Helicobacter Pylori
Length = 236
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 32/110 (29%)
Query: 9 IAARGLDIPDVEVVINY-------SFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKAL 61
I + G+D+ ++ VI S + +VHRI T +H++A+
Sbjct: 145 IHSFGIDVSKIKAVIERVELRRTNSGGFVPKTFVHRIKET--------------DHDQAI 190
Query: 62 AGELVNVLREARQVVPDALLKFGTHVKKKESKLYGAHFREISADAPKAKK 111
R+++ A K H+ K+ SK + H+ ++S++ K K+
Sbjct: 191 -----------RKIMNQAYHKVMVHITKELSKKHMEHYEKVSSEMKKRKE 229
>pdb|1AB0|A Chain A, C1gV32DF57H MUTANT OF MURINE ADIPOCYTE LIPID BINDING
Protein At Ph 4.5
Length = 131
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 18/83 (21%)
Query: 32 EDYVHRIGRTGQAGKK--GVSHPFLTNHNKALAGELVNVLREARQVVPDALLKFGTHVKK 89
+DY+ +G G A +K G++ P N ++ G+LV + E+ TH
Sbjct: 17 DDYMKEVG-VGFATRKDAGMAKP---NMIISVNGDLVTIRSES------------THKNT 60
Query: 90 KESKLYGAHFREISADAPKAKKI 112
+ S G F EI+AD K K I
Sbjct: 61 EISFKLGVEFDEITADDRKVKSI 83
>pdb|1ACD|A Chain A, V32dF57H MUTANT OF MURINE ADIPOCYTE LIPID BINDING PROTEIN
Length = 131
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 18/83 (21%)
Query: 32 EDYVHRIGRTGQAGKK--GVSHPFLTNHNKALAGELVNVLREARQVVPDALLKFGTHVKK 89
+DY+ +G G A +K G++ P N ++ G+LV + E+ TH
Sbjct: 17 DDYMKEVG-VGFATRKDAGMAKP---NMIISVNGDLVTIRSES------------THKNT 60
Query: 90 KESKLYGAHFREISADAPKAKKI 112
+ S G F EI+AD K K I
Sbjct: 61 EISFKLGVEFDEITADDRKVKSI 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,501,099
Number of Sequences: 62578
Number of extensions: 129280
Number of successful extensions: 406
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 336
Number of HSP's gapped (non-prelim): 69
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)