Query 038184
Match_columns 121
No_of_seqs 130 out of 1402
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 08:25:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038184.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038184hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0336 ATP-dependent RNA heli 99.9 1.1E-24 2.4E-29 169.8 8.8 97 1-97 516-612 (629)
2 KOG0331 ATP-dependent RNA heli 99.9 8.6E-25 1.9E-29 174.9 8.4 91 1-91 392-482 (519)
3 PTZ00110 helicase; Provisional 99.9 3.1E-23 6.7E-28 168.4 10.2 99 1-99 428-527 (545)
4 KOG0335 ATP-dependent RNA heli 99.9 1.9E-23 4.1E-28 165.4 8.1 82 1-82 388-469 (482)
5 KOG0330 ATP-dependent RNA heli 99.9 2E-23 4.4E-28 161.3 7.0 75 1-75 351-425 (476)
6 PLN00206 DEAD-box ATP-dependen 99.9 5.3E-23 1.1E-27 166.1 9.3 84 1-84 419-502 (518)
7 KOG0340 ATP-dependent RNA heli 99.9 8.6E-23 1.9E-27 156.5 6.8 77 1-77 305-381 (442)
8 KOG0333 U5 snRNP-like RNA heli 99.9 1.3E-22 2.9E-27 161.4 6.9 82 2-83 569-651 (673)
9 KOG0328 Predicted ATP-dependen 99.9 3.9E-22 8.4E-27 149.7 7.0 80 1-80 317-396 (400)
10 COG0513 SrmB Superfamily II DN 99.9 4E-22 8.7E-27 161.0 6.7 72 1-72 324-396 (513)
11 KOG0344 ATP-dependent RNA heli 99.9 1.3E-21 2.8E-26 156.8 8.2 85 1-85 439-523 (593)
12 KOG0342 ATP-dependent RNA heli 99.8 5.7E-22 1.2E-26 156.5 4.3 66 3-68 383-448 (543)
13 KOG0341 DEAD-box protein abstr 99.8 1.4E-21 3E-26 151.9 5.7 88 2-89 473-561 (610)
14 PRK04837 ATP-dependent RNA hel 99.8 3.4E-21 7.3E-26 151.8 5.6 73 1-73 306-378 (423)
15 KOG0326 ATP-dependent RNA heli 99.8 8.5E-21 1.8E-25 144.4 5.0 80 1-80 373-452 (459)
16 KOG0338 ATP-dependent RNA heli 99.8 5.4E-20 1.2E-24 146.4 8.1 68 1-68 477-544 (691)
17 PRK10590 ATP-dependent RNA hel 99.8 8.1E-20 1.8E-24 145.4 6.7 72 1-72 296-367 (456)
18 KOG0350 DEAD-box ATP-dependent 99.8 7.3E-20 1.6E-24 145.2 6.3 71 1-71 484-554 (620)
19 KOG0345 ATP-dependent RNA heli 99.8 6.5E-20 1.4E-24 144.6 5.7 63 3-65 310-372 (567)
20 PRK11192 ATP-dependent RNA hel 99.8 1.8E-19 3.9E-24 142.2 7.2 71 1-71 296-366 (434)
21 PRK11776 ATP-dependent RNA hel 99.8 2.1E-19 4.5E-24 143.0 7.0 71 1-71 293-363 (460)
22 PRK01297 ATP-dependent RNA hel 99.8 3.2E-19 6.9E-24 142.6 7.6 72 1-72 386-457 (475)
23 PRK11634 ATP-dependent RNA hel 99.8 2.2E-19 4.7E-24 148.1 6.5 71 1-71 296-366 (629)
24 KOG0348 ATP-dependent RNA heli 99.8 2.7E-19 5.8E-24 143.1 6.3 68 3-70 500-567 (708)
25 PRK04537 ATP-dependent RNA hel 99.8 3.8E-19 8.2E-24 145.3 6.8 71 1-71 308-378 (572)
26 KOG0347 RNA helicase [RNA proc 99.8 2.5E-19 5.5E-24 143.5 5.6 71 3-73 516-586 (731)
27 PLN03137 ATP-dependent DNA hel 99.8 5.2E-19 1.1E-23 151.4 7.7 66 1-66 731-796 (1195)
28 KOG0332 ATP-dependent RNA heli 99.8 5.9E-19 1.3E-23 136.3 7.0 79 2-80 382-468 (477)
29 PTZ00424 helicase 45; Provisio 99.8 4.2E-19 9E-24 138.2 5.7 78 1-78 318-395 (401)
30 TIGR00614 recQ_fam ATP-depende 99.8 6.1E-19 1.3E-23 141.0 6.4 103 1-103 277-383 (470)
31 KOG0339 ATP-dependent RNA heli 99.8 2.4E-18 5.2E-23 137.1 8.1 96 1-96 519-614 (731)
32 KOG0334 RNA helicase [RNA proc 99.7 1E-17 2.2E-22 141.1 7.9 89 1-89 664-752 (997)
33 PRK11057 ATP-dependent DNA hel 99.7 1.1E-17 2.4E-22 137.4 6.9 66 1-66 287-352 (607)
34 KOG0327 Translation initiation 99.7 6.7E-18 1.4E-22 130.3 4.4 80 1-80 314-393 (397)
35 KOG0346 RNA helicase [RNA proc 99.7 9.4E-18 2E-22 131.8 5.1 88 10-97 363-451 (569)
36 COG0514 RecQ Superfamily II DN 99.7 2.7E-17 5.8E-22 133.9 7.8 69 1-69 281-349 (590)
37 KOG0343 RNA Helicase [RNA proc 99.7 1.5E-17 3.4E-22 133.5 6.1 66 3-68 368-434 (758)
38 TIGR03817 DECH_helic helicase/ 99.7 1.8E-17 4E-22 138.8 6.0 70 1-70 330-401 (742)
39 TIGR01389 recQ ATP-dependent D 99.7 1.2E-16 2.6E-21 130.8 6.6 66 1-66 275-340 (591)
40 KOG4284 DEAD box protein [Tran 99.6 7.9E-16 1.7E-20 125.7 6.5 65 1-65 323-388 (980)
41 KOG0329 ATP-dependent RNA heli 99.6 1.4E-16 3.1E-21 118.6 1.8 76 4-79 302-378 (387)
42 PRK12898 secA preprotein trans 99.6 2.5E-15 5.4E-20 124.0 7.2 60 2-61 523-590 (656)
43 PF00271 Helicase_C: Helicase 99.6 1.2E-15 2.7E-20 93.8 3.8 44 2-45 35-78 (78)
44 PRK09200 preprotein translocas 99.5 8.1E-15 1.8E-19 123.1 6.8 60 2-61 478-545 (790)
45 PRK04914 ATP-dependent helicas 99.5 9.9E-15 2.2E-19 124.7 7.3 71 1-71 547-617 (956)
46 COG1111 MPH1 ERCC4-like helica 99.5 7.2E-14 1.6E-18 111.4 7.7 60 1-61 426-485 (542)
47 PHA02653 RNA helicase NPH-II; 99.5 4.3E-14 9.4E-19 117.4 5.2 59 1-60 447-517 (675)
48 KOG0337 ATP-dependent RNA heli 99.5 2.1E-14 4.6E-19 112.6 3.0 69 2-70 313-381 (529)
49 PRK05298 excinuclease ABC subu 99.5 1.3E-13 2.9E-18 114.3 7.7 81 1-82 497-591 (652)
50 KOG0351 ATP-dependent DNA heli 99.5 1E-13 2.2E-18 118.2 6.3 102 1-102 536-644 (941)
51 TIGR00643 recG ATP-dependent D 99.5 2.1E-13 4.6E-18 112.7 8.0 55 1-55 509-564 (630)
52 PRK10917 ATP-dependent DNA hel 99.5 2.4E-13 5.1E-18 113.3 8.2 55 1-55 532-587 (681)
53 TIGR00580 mfd transcription-re 99.4 1.5E-13 3.2E-18 117.5 6.8 57 1-57 713-770 (926)
54 PRK13767 ATP-dependent helicas 99.4 4E-13 8.7E-18 114.5 8.1 45 1-45 341-385 (876)
55 TIGR00631 uvrb excinuclease AB 99.4 4.3E-13 9.3E-18 111.3 7.5 67 1-68 493-564 (655)
56 TIGR03714 secA2 accessory Sec 99.4 3.6E-13 7.9E-18 112.7 5.8 59 2-61 474-541 (762)
57 PRK13766 Hef nuclease; Provisi 99.4 1.5E-12 3.2E-17 109.4 9.4 57 1-58 424-480 (773)
58 KOG0354 DEAD-box like helicase 99.4 7.7E-13 1.7E-17 109.8 7.2 62 1-64 475-536 (746)
59 KOG0349 Putative DEAD-box RNA 99.4 2.6E-13 5.6E-18 107.4 3.7 59 1-59 559-617 (725)
60 TIGR00963 secA preprotein tran 99.4 1.3E-12 2.8E-17 109.1 7.4 60 2-61 455-521 (745)
61 cd00079 HELICc Helicase superf 99.3 1.2E-12 2.5E-17 86.4 4.4 53 1-53 79-131 (131)
62 PRK10689 transcription-repair 99.3 1.3E-12 2.8E-17 113.8 5.2 56 1-56 862-918 (1147)
63 PRK09751 putative ATP-dependen 99.3 1.8E-12 4E-17 114.5 6.1 55 1-55 328-383 (1490)
64 TIGR01970 DEAH_box_HrpB ATP-de 99.3 1.2E-12 2.6E-17 110.9 4.0 57 2-59 264-338 (819)
65 PRK12906 secA preprotein trans 99.3 2.1E-12 4.6E-17 108.5 5.3 58 2-59 490-555 (796)
66 smart00490 HELICc helicase sup 99.3 2.4E-12 5.1E-17 78.4 4.0 44 2-45 39-82 (82)
67 TIGR01587 cas3_core CRISPR-ass 99.3 3.5E-12 7.5E-17 98.3 4.9 51 2-55 280-334 (358)
68 PRK11664 ATP-dependent RNA hel 99.3 3E-12 6.5E-17 108.4 3.7 57 2-59 267-341 (812)
69 KOG0353 ATP-dependent DNA heli 99.2 1.4E-11 3.1E-16 96.5 6.5 101 1-102 368-511 (695)
70 PRK02362 ski2-like helicase; P 99.2 9E-12 2E-16 104.6 5.4 57 1-57 330-397 (737)
71 PRK11131 ATP-dependent RNA hel 99.2 7.2E-12 1.6E-16 109.5 4.2 57 2-59 339-413 (1294)
72 KOG0352 ATP-dependent DNA heli 99.2 2.3E-11 5E-16 96.2 5.9 67 1-67 306-372 (641)
73 PRK12900 secA preprotein trans 99.2 1.8E-11 3.8E-16 104.4 4.0 59 2-60 648-714 (1025)
74 TIGR01967 DEAH_box_HrpA ATP-de 99.2 2.1E-11 4.6E-16 106.7 4.2 57 2-59 332-406 (1283)
75 TIGR00603 rad25 DNA repair hel 99.1 1.4E-10 3E-15 97.2 7.5 71 1-71 543-623 (732)
76 TIGR02621 cas3_GSU0051 CRISPR- 99.1 4.6E-11 1E-15 101.1 4.6 51 2-55 338-389 (844)
77 PHA02558 uvsW UvsW helicase; P 99.1 9.8E-11 2.1E-15 94.6 5.1 53 2-54 396-449 (501)
78 PRK00254 ski2-like helicase; P 99.1 1.5E-10 3.3E-15 97.0 5.6 58 1-58 322-389 (720)
79 PRK01172 ski2-like helicase; P 99.0 1.1E-09 2.3E-14 91.3 5.8 56 1-57 312-378 (674)
80 PRK05580 primosome assembly pr 98.9 2.3E-09 5.1E-14 89.6 6.1 58 1-58 481-550 (679)
81 COG1201 Lhr Lhr-like helicases 98.9 2.9E-09 6.4E-14 90.0 6.5 56 1-56 305-361 (814)
82 TIGR00595 priA primosomal prot 98.8 7.9E-09 1.7E-13 83.8 5.8 55 1-55 313-379 (505)
83 PRK14701 reverse gyrase; Provi 98.6 1.3E-08 2.8E-13 91.5 2.1 55 1-55 379-454 (1638)
84 PRK09694 helicase Cas3; Provis 98.6 2E-07 4.4E-12 79.9 8.2 42 2-46 623-664 (878)
85 PRK09401 reverse gyrase; Revie 98.5 4.4E-08 9.6E-13 86.1 2.8 42 1-42 377-429 (1176)
86 PLN03142 Probable chromatin-re 98.5 1.7E-07 3.7E-12 81.3 4.8 54 3-56 543-598 (1033)
87 KOG4150 Predicted ATP-dependen 98.3 6.8E-07 1.5E-11 73.5 5.0 60 3-62 586-647 (1034)
88 PRK11448 hsdR type I restricti 98.3 8.2E-07 1.8E-11 77.9 5.3 44 2-45 758-801 (1123)
89 COG1197 Mfd Transcription-repa 98.2 2.4E-06 5.1E-11 74.4 5.9 55 2-56 857-912 (1139)
90 COG1061 SSL2 DNA or RNA helica 98.2 4.1E-06 8.9E-11 67.1 5.7 43 1-43 333-375 (442)
91 COG1200 RecG RecG-like helicas 98.1 9.7E-06 2.1E-10 67.4 6.9 59 1-59 534-593 (677)
92 COG1205 Distinct helicase fami 98.1 2.3E-06 5E-11 73.4 2.6 55 1-55 365-420 (851)
93 TIGR01054 rgy reverse gyrase. 97.9 1.5E-05 3.2E-10 70.5 5.1 30 1-30 376-410 (1171)
94 COG1204 Superfamily II helicas 97.9 2.1E-05 4.6E-10 66.9 5.2 55 1-55 341-406 (766)
95 COG0556 UvrB Helicase subunit 97.9 2.1E-05 4.6E-10 64.2 5.0 64 2-66 498-566 (663)
96 KOG0947 Cytoplasmic exosomal R 97.8 2.5E-05 5.5E-10 67.2 4.3 56 1-57 657-723 (1248)
97 KOG0948 Nuclear exosomal RNA h 97.7 1.5E-05 3.3E-10 67.2 2.0 55 1-55 473-537 (1041)
98 PRK12904 preprotein translocas 97.7 0.00023 5E-09 61.0 8.9 58 2-59 480-575 (830)
99 KOG0950 DNA polymerase theta/e 97.7 6.6E-05 1.4E-09 64.5 5.5 65 1-65 549-619 (1008)
100 KOG0953 Mitochondrial RNA heli 97.6 7.1E-05 1.5E-09 61.4 4.7 54 1-55 410-475 (700)
101 PRK12903 secA preprotein trans 97.6 0.00033 7.1E-09 60.2 8.3 58 2-59 476-541 (925)
102 COG1203 CRISPR-associated heli 97.6 7.8E-05 1.7E-09 63.2 4.1 51 2-55 496-548 (733)
103 COG4098 comFA Superfamily II D 97.5 0.00044 9.6E-09 54.1 7.1 58 1-58 356-417 (441)
104 COG1198 PriA Primosomal protei 97.5 0.00023 4.9E-09 60.4 5.8 58 1-58 535-604 (730)
105 COG1202 Superfamily II helicas 97.3 0.00012 2.7E-09 60.5 1.6 58 1-58 491-554 (830)
106 PRK13104 secA preprotein trans 97.3 0.001 2.3E-08 57.4 7.1 58 2-59 494-589 (896)
107 PRK13107 preprotein translocas 97.2 0.0011 2.4E-08 57.2 6.8 58 2-59 499-593 (908)
108 COG1643 HrpA HrpA-like helicas 97.1 0.00036 7.8E-09 60.0 3.3 56 2-58 315-388 (845)
109 PRK12899 secA preprotein trans 97.1 0.0038 8.2E-08 54.3 8.8 59 2-60 618-684 (970)
110 KOG0926 DEAH-box RNA helicase 97.0 0.00041 8.8E-09 59.3 2.3 52 3-55 633-702 (1172)
111 KOG0923 mRNA splicing factor A 96.9 0.00075 1.6E-08 56.7 3.3 53 2-55 534-604 (902)
112 KOG0390 DNA repair protein, SN 96.9 0.0011 2.5E-08 56.4 4.4 51 3-53 651-701 (776)
113 PRK12326 preprotein translocas 96.9 0.0023 5E-08 54.3 5.6 58 2-59 477-549 (764)
114 KOG0924 mRNA splicing factor A 96.7 0.0012 2.7E-08 55.7 2.6 54 2-56 625-696 (1042)
115 KOG0920 ATP-dependent RNA heli 96.6 0.0014 3E-08 56.8 2.7 54 2-56 472-543 (924)
116 KOG0922 DEAH-box RNA helicase 96.6 0.0019 4.2E-08 53.9 3.2 57 2-59 318-392 (674)
117 PRK12901 secA preprotein trans 96.4 0.0065 1.4E-07 53.3 5.6 58 2-59 678-743 (1112)
118 KOG0387 Transcription-coupled 96.3 0.0094 2E-07 51.0 5.8 67 3-69 602-673 (923)
119 COG4581 Superfamily II RNA hel 96.3 0.0046 1E-07 54.2 3.9 56 1-56 471-536 (1041)
120 KOG0952 DNA/RNA helicase MER3/ 96.1 0.014 3.1E-07 51.2 5.9 57 1-57 423-491 (1230)
121 KOG0949 Predicted helicase, DE 96.1 0.013 2.9E-07 51.3 5.5 62 2-65 990-1054(1330)
122 PF13871 Helicase_C_4: Helicas 95.9 0.034 7.3E-07 42.4 6.5 72 2-73 63-146 (278)
123 PRK13103 secA preprotein trans 95.8 0.018 3.9E-07 50.1 5.4 58 2-59 499-593 (913)
124 KOG0951 RNA helicase BRR2, DEA 95.5 0.02 4.4E-07 51.3 4.4 55 1-55 634-700 (1674)
125 COG0553 HepA Superfamily II DN 95.5 0.03 6.4E-07 47.5 5.3 49 3-51 766-814 (866)
126 TIGR00348 hsdR type I site-spe 95.4 0.025 5.3E-07 47.8 4.5 54 1-55 592-649 (667)
127 KOG0925 mRNA splicing factor A 95.0 0.023 4.9E-07 46.7 3.0 54 2-56 315-386 (699)
128 COG4889 Predicted helicase [Ge 94.9 0.028 6.1E-07 49.2 3.6 54 2-55 530-586 (1518)
129 TIGR01407 dinG_rel DnaQ family 94.7 0.021 4.5E-07 49.4 2.4 55 2-56 727-813 (850)
130 PF13307 Helicase_C_2: Helicas 94.7 0.083 1.8E-06 36.8 5.0 54 3-56 62-149 (167)
131 KOG0384 Chromodomain-helicase 94.6 0.045 9.8E-07 48.9 4.1 54 3-56 755-810 (1373)
132 TIGR03158 cas3_cyano CRISPR-as 94.5 0.023 4.9E-07 44.4 1.9 17 25-42 341-357 (357)
133 TIGR02562 cas3_yersinia CRISPR 94.5 0.028 6E-07 49.7 2.6 42 2-46 840-881 (1110)
134 KOG0385 Chromatin remodeling c 94.2 0.13 2.8E-06 44.4 5.8 51 3-53 543-593 (971)
135 smart00492 HELICc3 helicase su 94.2 0.17 3.6E-06 34.6 5.5 27 3-29 51-79 (141)
136 smart00491 HELICc2 helicase su 93.9 0.2 4.2E-06 34.3 5.4 27 3-29 50-80 (142)
137 KOG0701 dsRNA-specific nucleas 93.5 0.015 3.2E-07 53.1 -1.0 43 1-43 355-397 (1606)
138 KOG1015 Transcription regulato 93.2 0.06 1.3E-06 47.4 2.3 51 3-53 1221-1271(1567)
139 TIGR00596 rad1 DNA repair prot 92.9 0.3 6.6E-06 42.4 6.1 50 5-57 431-514 (814)
140 COG1199 DinG Rad3-related DNA 92.3 0.34 7.5E-06 40.5 5.6 53 3-55 531-615 (654)
141 COG4096 HsdR Type I site-speci 91.9 0.11 2.4E-06 44.8 2.2 42 2-43 483-524 (875)
142 KOG0389 SNF2 family DNA-depend 91.7 0.19 4.1E-06 43.4 3.3 56 3-58 832-889 (941)
143 PRK11747 dinG ATP-dependent DN 91.5 0.55 1.2E-05 40.0 5.9 27 3-29 588-616 (697)
144 PF10593 Z1: Z1 domain; Inter 90.8 0.55 1.2E-05 34.9 4.8 71 2-72 137-208 (239)
145 CHL00122 secA preprotein trans 90.6 0.83 1.8E-05 39.9 6.2 24 36-59 610-633 (870)
146 KOG0391 SNF2 family DNA-depend 90.1 0.68 1.5E-05 42.1 5.3 50 3-56 1331-1386(1958)
147 KOG0388 SNF2 family DNA-depend 89.7 0.39 8.4E-06 41.5 3.4 47 3-49 1098-1144(1185)
148 PRK14873 primosome assembly pr 88.6 1.3 2.8E-05 37.7 5.9 52 2-58 473-540 (665)
149 KOG1000 Chromatin remodeling p 88.2 0.64 1.4E-05 38.5 3.6 66 5-70 549-618 (689)
150 KOG0392 SNF2 family DNA-depend 88.1 0.73 1.6E-05 41.8 4.2 48 3-50 1398-1445(1549)
151 KOG0386 Chromatin remodeling c 87.5 1.3 2.8E-05 39.4 5.2 52 3-54 782-833 (1157)
152 PRK08074 bifunctional ATP-depe 86.8 1.8 3.8E-05 38.2 5.8 28 2-29 806-835 (928)
153 COG1110 Reverse gyrase [DNA re 86.5 1.5 3.2E-05 39.2 5.0 39 30-70 528-570 (1187)
154 TIGR00604 rad3 DNA repair heli 84.6 2.9 6.4E-05 35.6 5.9 27 3-29 585-615 (705)
155 PRK07246 bifunctional ATP-depe 84.0 3 6.5E-05 36.3 5.8 28 2-29 696-725 (820)
156 PRK09401 reverse gyrase; Revie 82.8 3 6.5E-05 37.8 5.5 40 30-71 518-561 (1176)
157 TIGR03117 cas_csf4 CRISPR-asso 78.2 6.1 0.00013 33.6 5.6 29 2-30 524-562 (636)
158 TIGR01054 rgy reverse gyrase. 71.0 6.5 0.00014 35.7 4.2 39 30-70 516-558 (1171)
159 PF06862 DUF1253: Protein of u 68.9 14 0.0003 30.1 5.4 67 2-68 352-426 (442)
160 COG0610 Type I site-specific r 66.3 18 0.0004 32.2 6.0 54 1-55 594-651 (962)
161 KOG4439 RNA polymerase II tran 61.7 10 0.00022 33.0 3.4 47 5-51 804-850 (901)
162 COG0653 SecA Preprotein transl 61.3 6.6 0.00014 34.4 2.3 54 3-58 480-546 (822)
163 PRK14701 reverse gyrase; Provi 58.1 8 0.00017 36.4 2.4 39 30-70 495-537 (1638)
164 KOG1016 Predicted DNA helicase 57.5 12 0.00027 33.1 3.2 64 3-66 793-856 (1387)
165 KOG1513 Nuclear helicase MOP-3 55.4 26 0.00056 31.3 4.8 71 4-74 861-943 (1300)
166 KOG2340 Uncharacterized conser 50.9 33 0.00072 29.1 4.6 68 2-69 604-680 (698)
167 KOG2281 Dipeptidyl aminopeptid 49.0 16 0.00035 31.5 2.6 50 3-53 328-377 (867)
168 COG3587 Restriction endonuclea 48.1 63 0.0014 28.9 6.0 69 2-70 485-566 (985)
169 PF02399 Herpes_ori_bp: Origin 46.8 26 0.00056 30.8 3.6 53 2-55 328-386 (824)
170 KOG1123 RNA polymerase II tran 46.4 41 0.00088 28.5 4.5 57 1-57 590-653 (776)
171 PLN02390 molybdopterin synthas 45.9 45 0.00097 21.9 3.9 46 34-80 57-102 (111)
172 KOG0298 DEAD box-containing he 45.3 12 0.00025 34.4 1.3 46 3-48 1270-1315(1394)
173 PHA03371 circ protein; Provisi 44.2 28 0.00062 25.9 3.0 46 9-54 29-88 (240)
174 PRK15483 type III restriction- 43.4 30 0.00064 31.1 3.5 71 1-71 502-582 (986)
175 PRK12902 secA preprotein trans 38.9 63 0.0014 29.0 4.7 24 36-59 667-690 (939)
176 cd00756 MoaE MoaE family. Memb 34.7 72 0.0016 21.2 3.6 44 35-79 69-112 (124)
177 PTZ00365 60S ribosomal protein 34.2 1E+02 0.0023 23.5 4.7 75 3-84 152-234 (266)
178 KOG0327 Translation initiation 33.7 42 0.0009 27.0 2.6 61 2-63 124-184 (397)
179 PRK10678 moaE molybdopterin gu 33.6 84 0.0018 21.8 3.9 46 35-81 82-127 (150)
180 KOG0701 dsRNA-specific nucleas 31.4 28 0.00061 32.9 1.5 40 2-41 723-762 (1606)
181 KOG2837 Protein containing a U 30.9 70 0.0015 24.6 3.3 40 25-64 109-152 (309)
182 PF10357 Kin17_mid: Domain of 29.7 55 0.0012 22.1 2.4 44 18-61 50-98 (127)
183 COG0314 MoaE Molybdopterin con 29.6 87 0.0019 21.7 3.4 46 34-80 81-126 (149)
184 COG1110 Reverse gyrase [DNA re 29.1 35 0.00075 31.0 1.6 29 2-30 385-418 (1187)
185 COG1182 AcpD Acyl carrier prot 26.6 25 0.00054 25.7 0.3 22 22-43 97-118 (202)
186 KOG0336 ATP-dependent RNA heli 25.4 70 0.0015 26.4 2.7 59 33-91 551-610 (629)
187 PRK12902 secA preprotein trans 23.4 44 0.00094 29.9 1.2 16 2-17 491-506 (939)
188 PF02391 MoaE: MoaE protein; 21.9 1.5E+02 0.0033 19.3 3.4 30 34-64 76-105 (117)
189 PF12761 End3: Actin cytoskele 21.4 69 0.0015 23.3 1.8 24 31-54 67-91 (195)
190 TIGR01916 F420_cofE F420-0:gam 20.8 1.5E+02 0.0032 22.3 3.5 44 10-55 103-168 (243)
No 1
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=1.1e-24 Score=169.82 Aligned_cols=97 Identities=48% Similarity=0.813 Sum_probs=90.7
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDAL 80 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 80 (121)
++||||||+++||||++++.||+|||+|.+++.|+||+||+||+|+.|.+++|++-+|..+++.+.+.+..+.|++|+.|
T Consensus 516 vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL 595 (629)
T KOG0336|consen 516 VRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDEL 595 (629)
T ss_pred eEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhhhhhhhhhhcc
Q 038184 81 LKFGTHVKKKESKLYGA 97 (121)
Q Consensus 81 ~~~~~~~~~~~~~~~~~ 97 (121)
..+++..+-+.+++-+.
T Consensus 596 ~~mAeryk~~q~kR~~e 612 (629)
T KOG0336|consen 596 VRMAERYKLKQSKRDGE 612 (629)
T ss_pred HHHHHHHHhhhcccccc
Confidence 99988877666555443
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=8.6e-25 Score=174.87 Aligned_cols=91 Identities=57% Similarity=0.878 Sum_probs=85.5
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDAL 80 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 80 (121)
.+||||||+++|||||++|++|||||+|.++++|+||+|||||+|+.|.+++|++..+......+.+.+.+..+.+|+.+
T Consensus 392 ~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l 471 (519)
T KOG0331|consen 392 SPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDL 471 (519)
T ss_pred cceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHH
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhhhhhh
Q 038184 81 LKFGTHVKKKE 91 (121)
Q Consensus 81 ~~~~~~~~~~~ 91 (121)
..++.......
T Consensus 472 ~~~~~~~~~~~ 482 (519)
T KOG0331|consen 472 LEYARVSGSGG 482 (519)
T ss_pred HHHHhhcccCC
Confidence 88876655444
No 3
>PTZ00110 helicase; Provisional
Probab=99.89 E-value=3.1e-23 Score=168.39 Aligned_cols=99 Identities=51% Similarity=0.753 Sum_probs=88.6
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDAL 80 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 80 (121)
++|||||++++||||+++|++|||||+|.++++|+||+|||||+|+.|.+++|+++.+...+..+.+.++...+.+|++|
T Consensus 428 ~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l 507 (545)
T PTZ00110 428 SPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPEL 507 (545)
T ss_pred CcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhhhh-hhhhhhcccc
Q 038184 81 LKFGTHVKK-KESKLYGAHF 99 (121)
Q Consensus 81 ~~~~~~~~~-~~~~~~~~~~ 99 (121)
.++....+. .+...++.++
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~ 527 (545)
T PTZ00110 508 EKLSNERSNGTERRRWGGYG 527 (545)
T ss_pred HHHHHHhcCCcccccccCCC
Confidence 998766552 2333444443
No 4
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=1.9e-23 Score=165.40 Aligned_cols=82 Identities=50% Similarity=0.810 Sum_probs=79.8
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDAL 80 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 80 (121)
+.+||||++++||||+++|.||||||+|.+..+|+||||||||+|+.|.+++|++..+....+.|.+.+.++.+.+|+||
T Consensus 388 ~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~vP~wl 467 (482)
T KOG0335|consen 388 APVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQEVPQWL 467 (482)
T ss_pred cceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhcccCcHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hh
Q 038184 81 LK 82 (121)
Q Consensus 81 ~~ 82 (121)
..
T Consensus 468 ~~ 469 (482)
T KOG0335|consen 468 SE 469 (482)
T ss_pred Hh
Confidence 87
No 5
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=2e-23 Score=161.31 Aligned_cols=75 Identities=39% Similarity=0.696 Sum_probs=71.1
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhccc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQV 75 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~ 75 (121)
.+||||||+++||||+|+|++|||||+|.+..+|+||+||+||+|++|.+|++++.-|...+.+|+..+......
T Consensus 351 r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 351 RSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPE 425 (476)
T ss_pred CcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCc
Confidence 369999999999999999999999999999999999999999999999999999999999999999888877655
No 6
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.89 E-value=5.3e-23 Score=166.09 Aligned_cols=84 Identities=32% Similarity=0.583 Sum_probs=80.8
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDAL 80 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 80 (121)
++|||||++++||||+|+|++|||||+|.++.+|+||+|||||.|..|.+++|+++++...+..+.+.++..++.+|+++
T Consensus 419 ~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l 498 (518)
T PLN00206 419 VPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIPREL 498 (518)
T ss_pred CCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhh
Q 038184 81 LKFG 84 (121)
Q Consensus 81 ~~~~ 84 (121)
.+..
T Consensus 499 ~~~~ 502 (518)
T PLN00206 499 ANSR 502 (518)
T ss_pred HhCh
Confidence 8755
No 7
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=8.6e-23 Score=156.47 Aligned_cols=77 Identities=36% Similarity=0.639 Sum_probs=71.3
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccCh
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVP 77 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~ 77 (121)
++|||||||++||||||.|++|||||+|+++.+|+||+||++|+|+.|.+++++++.|...+..|++.......+.+
T Consensus 305 ~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~ 381 (442)
T KOG0340|consen 305 ARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYN 381 (442)
T ss_pred ccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccccccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999888776555443
No 8
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.87 E-value=1.3e-22 Score=161.44 Aligned_cols=82 Identities=48% Similarity=0.764 Sum_probs=73.2
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHH-hcccChHHH
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLRE-ARQVVPDAL 80 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l 80 (121)
.||||||+++||||||+|.+|||||++.++++|+||||||||+|+.|.+++|+++.+...+..|...+.+ .....|..+
T Consensus 569 dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~El 648 (673)
T KOG0333|consen 569 DILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALRESVKSHCPPEL 648 (673)
T ss_pred CEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHHHhhhccCChhh
Confidence 5999999999999999999999999999999999999999999999999999999998888888777664 455567777
Q ss_pred Hhh
Q 038184 81 LKF 83 (121)
Q Consensus 81 ~~~ 83 (121)
.+.
T Consensus 649 a~h 651 (673)
T KOG0333|consen 649 ANH 651 (673)
T ss_pred ccC
Confidence 554
No 9
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=3.9e-22 Score=149.66 Aligned_cols=80 Identities=33% Similarity=0.608 Sum_probs=76.7
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDAL 80 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 80 (121)
.+||++||+.+||+|+|.|++|||||+|.+.+.|+||+||.||.|++|++|.|+...|....+.+++.++....++|..+
T Consensus 317 SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nv 396 (400)
T KOG0328|consen 317 SRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNV 396 (400)
T ss_pred ceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchh
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999888764
No 10
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=4e-22 Score=160.96 Aligned_cols=72 Identities=54% Similarity=0.856 Sum_probs=67.4
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCc-cHHHHHHHHHHHHHh
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNH-NKALAGELVNVLREA 72 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~-~~~~~~~i~~~~~~~ 72 (121)
++||||||+++|||||++|++|||||+|.++++|+||+|||||+|+.|.+++|+++. |...+..++..+...
T Consensus 324 ~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 324 LRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred CCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 479999999999999999999999999999999999999999999999999999986 888888888887554
No 11
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=1.3e-21 Score=156.80 Aligned_cols=85 Identities=34% Similarity=0.697 Sum_probs=81.5
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDAL 80 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 80 (121)
|+||+||++++||+|+.++++|||||+|.+..+|+||+||+||+|+.|.|++||+..+...++.+.+.+...+.++|+++
T Consensus 439 IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG~evpe~~ 518 (593)
T KOG0344|consen 439 IWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGCEVPEKI 518 (593)
T ss_pred eeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcCCcchHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Hhhhh
Q 038184 81 LKFGT 85 (121)
Q Consensus 81 ~~~~~ 85 (121)
-.+..
T Consensus 519 m~~~k 523 (593)
T KOG0344|consen 519 MGIKK 523 (593)
T ss_pred Hhhhh
Confidence 76554
No 12
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.85 E-value=5.7e-22 Score=156.51 Aligned_cols=66 Identities=42% Similarity=0.714 Sum_probs=63.5
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHH
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNV 68 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~ 68 (121)
|||||||++||+|+|+|++||+||+|.++++|+||+|||||.|..|.+++++.|.+...++.+.+.
T Consensus 383 IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~l 448 (543)
T KOG0342|consen 383 ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKKL 448 (543)
T ss_pred eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhhC
Confidence 899999999999999999999999999999999999999999999999999999999999888743
No 13
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.84 E-value=1.4e-21 Score=151.88 Aligned_cols=88 Identities=42% Similarity=0.776 Sum_probs=80.5
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCc-cHHHHHHHHHHHHHhcccChHHH
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNH-NKALAGELVNVLREARQVVPDAL 80 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~-~~~~~~~i~~~~~~~~~~~~~~l 80 (121)
.||||||+++.|+|+|++.||||||+|..+++|+||+|||||.|+.|.+.+|++.. +...+-.+...+.+.++.+|+.|
T Consensus 473 DVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~L 552 (610)
T KOG0341|consen 473 DVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVPPVL 552 (610)
T ss_pred ceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCCHHH
Confidence 48999999999999999999999999999999999999999999999999999865 45666788888999999999999
Q ss_pred Hhhhhhhhh
Q 038184 81 LKFGTHVKK 89 (121)
Q Consensus 81 ~~~~~~~~~ 89 (121)
..+.-.++.
T Consensus 553 ~~L~~~~E~ 561 (610)
T KOG0341|consen 553 AELAGPMEE 561 (610)
T ss_pred HHhCCCccc
Confidence 988776664
No 14
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.83 E-value=3.4e-21 Score=151.80 Aligned_cols=73 Identities=42% Similarity=0.621 Sum_probs=67.6
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREAR 73 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~ 73 (121)
++|||||++++||||+|+|++|||||+|.++.+|+||+||+||.|+.|.+++|+++.+...+..+++.+....
T Consensus 306 ~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~ 378 (423)
T PRK04837 306 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSI 378 (423)
T ss_pred CcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCC
Confidence 5799999999999999999999999999999999999999999999999999999999888888877665443
No 15
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=8.5e-21 Score=144.40 Aligned_cols=80 Identities=34% Similarity=0.576 Sum_probs=76.7
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDAL 80 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 80 (121)
|+.|||||.+.||||++.|+.|||||+|+++++|+||+||+||+|.-|.||.+++-+|...+..+++.+......+|+.+
T Consensus 373 crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~i 452 (459)
T KOG0326|consen 373 CRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNI 452 (459)
T ss_pred cceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999998888665
No 16
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=5.4e-20 Score=146.43 Aligned_cols=68 Identities=43% Similarity=0.761 Sum_probs=65.2
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNV 68 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~ 68 (121)
|.||||||+++|||||+.|..||||++|.+.+.|+||+|||+|+|+.|.+++|+...+...++.+.+.
T Consensus 477 idvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 477 IDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred CCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 67999999999999999999999999999999999999999999999999999999999998888666
No 17
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.80 E-value=8.1e-20 Score=145.45 Aligned_cols=72 Identities=43% Similarity=0.716 Sum_probs=67.4
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHh
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREA 72 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~ 72 (121)
++|||||++++||||+|+|++|||||+|.++.+|+||+|||||+|..|.+++|+...|...++.++..+...
T Consensus 296 ~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~ 367 (456)
T PRK10590 296 IRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367 (456)
T ss_pred CcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCC
Confidence 579999999999999999999999999999999999999999999999999999999988888888776644
No 18
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=7.3e-20 Score=145.17 Aligned_cols=71 Identities=38% Similarity=0.653 Sum_probs=66.5
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLRE 71 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~ 71 (121)
||||||||+++||+|+-+|+.|||||+|.+..+|+||+|||+|+|+.|.+++++...+...+.++.+....
T Consensus 484 i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 484 INVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred ceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 68999999999999999999999999999999999999999999999999999999999888887666544
No 19
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=6.5e-20 Score=144.57 Aligned_cols=63 Identities=40% Similarity=0.709 Sum_probs=58.8
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHH
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGEL 65 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i 65 (121)
+|+||||++||||||+|++||+||+|.+++.|+||+|||||+|+.|.+++|+.+++...++.+
T Consensus 310 vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl 372 (567)
T KOG0345|consen 310 VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFL 372 (567)
T ss_pred eEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999776655443
No 20
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.79 E-value=1.8e-19 Score=142.25 Aligned_cols=71 Identities=45% Similarity=0.816 Sum_probs=66.6
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLRE 71 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~ 71 (121)
++|||||++++||+|+|+|++|||||+|.+...|+||+||+||+|..|.+++|++..|...+.+++..+..
T Consensus 296 ~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~ 366 (434)
T PRK11192 296 VNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEE 366 (434)
T ss_pred CcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhc
Confidence 57999999999999999999999999999999999999999999999999999999999888888876654
No 21
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.79 E-value=2.1e-19 Score=142.95 Aligned_cols=71 Identities=44% Similarity=0.631 Sum_probs=66.1
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLRE 71 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~ 71 (121)
++|||||++++||+|+|++++|||||+|.++.+|+||+|||||+|+.|.+++|+++.+...+..++..+..
T Consensus 293 ~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 293 CSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred CcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 47999999999999999999999999999999999999999999999999999999988888888776554
No 22
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.78 E-value=3.2e-19 Score=142.55 Aligned_cols=72 Identities=42% Similarity=0.692 Sum_probs=67.5
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHh
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREA 72 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~ 72 (121)
++|||||+++++|||+++|++||+||+|.++.+|+||+||+||.|+.|.+++|+++.|...+..+++.+...
T Consensus 386 ~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~ 457 (475)
T PRK01297 386 IRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRK 457 (475)
T ss_pred CcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCC
Confidence 579999999999999999999999999999999999999999999999999999998888888888877654
No 23
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.78 E-value=2.2e-19 Score=148.07 Aligned_cols=71 Identities=41% Similarity=0.789 Sum_probs=65.7
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLRE 71 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~ 71 (121)
++|||||+++++|||+|+|++|||||+|.++++|+||+|||||+|+.|.+++|+.+.+...++.+++.++.
T Consensus 296 ~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~ 366 (629)
T PRK11634 296 LDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 (629)
T ss_pred CCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCC
Confidence 47999999999999999999999999999999999999999999999999999999888888887766544
No 24
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.78 E-value=2.7e-19 Score=143.07 Aligned_cols=68 Identities=41% Similarity=0.690 Sum_probs=63.4
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHH
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLR 70 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~ 70 (121)
||+||||++||||+|+|.+||+||.|.++.+|+||+|||+|.|.+|.+++|+.|.+...+..+.....
T Consensus 500 VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~~ 567 (708)
T KOG0348|consen 500 VLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHHI 567 (708)
T ss_pred EEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhcc
Confidence 89999999999999999999999999999999999999999999999999999999987777655433
No 25
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.77 E-value=3.8e-19 Score=145.30 Aligned_cols=71 Identities=39% Similarity=0.653 Sum_probs=66.0
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLRE 71 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~ 71 (121)
++|||||++++||||+++|++|||||+|.++++|+||+||+||.|..|.+++|+.+.+...+..++..+..
T Consensus 308 ~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~ 378 (572)
T PRK04537 308 LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQ 378 (572)
T ss_pred CeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcC
Confidence 47999999999999999999999999999999999999999999999999999999888888888776554
No 26
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.77 E-value=2.5e-19 Score=143.54 Aligned_cols=71 Identities=44% Similarity=0.648 Sum_probs=67.9
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhc
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREAR 73 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~ 73 (121)
|||||||++||||||+|+|||||.+|.+.+-|+||.|||+|++..|..++++.|.+...+.+|++.++...
T Consensus 516 VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 516 VLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKKE 586 (731)
T ss_pred EEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhcc
Confidence 89999999999999999999999999999999999999999999999999999999999999988888643
No 27
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.77 E-value=5.2e-19 Score=151.43 Aligned_cols=66 Identities=24% Similarity=0.433 Sum_probs=61.7
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELV 66 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~ 66 (121)
++|||||++++||||+|+|++|||||+|.+++.|+||+|||||.|..|.+++|++..|....+.+.
T Consensus 731 i~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 731 INIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred CcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999988877666664
No 28
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.77 E-value=5.9e-19 Score=136.29 Aligned_cols=79 Identities=34% Similarity=0.685 Sum_probs=66.9
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCC------ChhhhhhhheeceeCCCeeEEEEEEcCcc-HHHHHHHHHHHHHhcc
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPL------TTEDYVHRIGRTGQAGKKGVSHPFLTNHN-KALAGELVNVLREARQ 74 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~------~~~~y~~r~GR~gR~g~~g~~i~~~~~~~-~~~~~~i~~~~~~~~~ 74 (121)
+|||+|+|++||||++.|+.|||||+|. ++++|+||+|||||+|+.|.++.|+...+ ...+.+|++.+.....
T Consensus 382 kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~ 461 (477)
T KOG0332|consen 382 KVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIK 461 (477)
T ss_pred eEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcce
Confidence 6999999999999999999999999997 48999999999999999999999997554 5667788888855433
Q ss_pred -cChHHH
Q 038184 75 -VVPDAL 80 (121)
Q Consensus 75 -~~~~~l 80 (121)
..|+.+
T Consensus 462 ~~~~~d~ 468 (477)
T KOG0332|consen 462 RLDPDDL 468 (477)
T ss_pred ecCCccH
Confidence 344444
No 29
>PTZ00424 helicase 45; Provisional
Probab=99.77 E-value=4.2e-19 Score=138.25 Aligned_cols=78 Identities=36% Similarity=0.659 Sum_probs=70.8
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPD 78 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~ 78 (121)
++|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.+++|+++.+...+..+++.+....+..+.
T Consensus 318 ~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~ 395 (401)
T PTZ00424 318 TRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPM 395 (401)
T ss_pred CCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCc
Confidence 579999999999999999999999999999999999999999999999999999999988888887777765555543
No 30
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.76 E-value=6.1e-19 Score=140.96 Aligned_cols=103 Identities=24% Similarity=0.328 Sum_probs=77.3
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcc-cC-hH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQ-VV-PD 78 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~-~~-~~ 78 (121)
++|||||++++||||+|+|++||||++|.+++.|+||+|||||.|..|.+++|+++.|...++.+........+ .. +.
T Consensus 277 ~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 356 (470)
T TIGR00614 277 IQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLMEEPDGQQRTYKLK 356 (470)
T ss_pred CcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHhcCCchhHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999988877776443221111 00 11
Q ss_pred HHHh--hhhhhhhhhhhhhcccccccc
Q 038184 79 ALLK--FGTHVKKKESKLYGAHFREIS 103 (121)
Q Consensus 79 ~l~~--~~~~~~~~~~~~~~~~~~~~~ 103 (121)
.+.. .......+....+..+|++..
T Consensus 357 ~~~~~~~~~~~~~crr~~l~~~f~~~~ 383 (470)
T TIGR00614 357 LYEMMEYCLNSSTCRRLILLSHFGEKQ 383 (470)
T ss_pred HHHHHHHHhccccCHHHHHHHHcCCcc
Confidence 1111 122334566667777787753
No 31
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=2.4e-18 Score=137.14 Aligned_cols=96 Identities=45% Similarity=0.698 Sum_probs=88.4
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDAL 80 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 80 (121)
+.|||+||+++||+||+++..|||||+-++++.|.||+||+||+|..|++++++++.|...+..|...|..++|++|+.|
T Consensus 519 ~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l 598 (731)
T KOG0339|consen 519 KPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDEL 598 (731)
T ss_pred CceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhccccCChHH
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhhhhhhhhhhc
Q 038184 81 LKFGTHVKKKESKLYG 96 (121)
Q Consensus 81 ~~~~~~~~~~~~~~~~ 96 (121)
.+++-.+.--++.+.+
T Consensus 599 ~dlamk~s~fr~~r~~ 614 (731)
T KOG0339|consen 599 MDLAMKSSWFRSSRFG 614 (731)
T ss_pred HHHHhhhhhhhhhhcc
Confidence 9888777655544433
No 32
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.72 E-value=1e-17 Score=141.11 Aligned_cols=89 Identities=44% Similarity=0.742 Sum_probs=82.9
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDAL 80 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 80 (121)
+++||||++++||||+.++.+|||||+|...++|+||+|||||+|++|.|++|+++.+....-.|.+.+...++.+|..+
T Consensus 664 ~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l 743 (997)
T KOG0334|consen 664 VNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLL 743 (997)
T ss_pred ceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCchHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred Hhhhhhhhh
Q 038184 81 LKFGTHVKK 89 (121)
Q Consensus 81 ~~~~~~~~~ 89 (121)
+.+......
T Consensus 744 ~~l~~~f~~ 752 (997)
T KOG0334|consen 744 QALSERFKA 752 (997)
T ss_pred HHHHHHHHh
Confidence 766655433
No 33
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.71 E-value=1.1e-17 Score=137.44 Aligned_cols=66 Identities=24% Similarity=0.426 Sum_probs=61.1
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELV 66 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~ 66 (121)
++|||||++++||||+|+|++|||||+|.+.++|+||+|||||.|..|.+++|+++.|...++.+.
T Consensus 287 ~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 287 LQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred CCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999998876665553
No 34
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=6.7e-18 Score=130.26 Aligned_cols=80 Identities=33% Similarity=0.653 Sum_probs=74.9
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDAL 80 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 80 (121)
.+|||+|+.++||+|+..+..|+|||+|...++|+||+||+||.|++|.++.|++..+...++.+++++.....++|...
T Consensus 314 srvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~ 393 (397)
T KOG0327|consen 314 SRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNF 393 (397)
T ss_pred ceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccch
Confidence 37999999999999999999999999999999999999999999999999999999999999999988887777777654
No 35
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.71 E-value=9.4e-18 Score=131.80 Aligned_cols=88 Identities=31% Similarity=0.535 Sum_probs=74.6
Q ss_pred ccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHh-cccChHHHHhhhhhhh
Q 038184 10 AARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREA-RQVVPDALLKFGTHVK 88 (121)
Q Consensus 10 ~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~-~~~~~~~l~~~~~~~~ 88 (121)
.+||||+.+|.+|+|||+|.++.+|+||+|||+|+++.|.+++|+.|.+......++..++.. .+.=+..++.+...++
T Consensus 363 VsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~d~~~~~~~qilqPY~f~~e 442 (569)
T KOG0346|consen 363 VSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESILKDENRQEGRQILQPYQFRME 442 (569)
T ss_pred hhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHHhhHHhhcCccccccccchHH
Confidence 479999999999999999999999999999999999999999999999988777888777775 3333446777777777
Q ss_pred hhhhhhhcc
Q 038184 89 KKESKLYGA 97 (121)
Q Consensus 89 ~~~~~~~~~ 97 (121)
+.++++|..
T Consensus 443 evesfryR~ 451 (569)
T KOG0346|consen 443 EVESFRYRA 451 (569)
T ss_pred HHHHHHHHH
Confidence 777776654
No 36
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.71 E-value=2.7e-17 Score=133.87 Aligned_cols=69 Identities=28% Similarity=0.443 Sum_probs=64.5
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVL 69 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~ 69 (121)
++|+|||.+++||||.|+|.+|||||+|.++++|+|.+|||||.|....+++++.+.|..+.+.+.+..
T Consensus 281 ~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~ 349 (590)
T COG0514 281 IKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQS 349 (590)
T ss_pred CcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHhh
Confidence 479999999999999999999999999999999999999999999999999999999988877775553
No 37
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.70 E-value=1.5e-17 Score=133.52 Aligned_cols=66 Identities=38% Similarity=0.609 Sum_probs=60.2
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCcc-HHHHHHHHHH
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHN-KALAGELVNV 68 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~-~~~~~~i~~~ 68 (121)
||+|||+++||||+|.|++||+||.|.++++|+||+||++|.+..|.++++++|.+ ..++..|++.
T Consensus 368 vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 368 VLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK 434 (758)
T ss_pred EEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc
Confidence 89999999999999999999999999999999999999999999999999999988 5555555443
No 38
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.70 E-value=1.8e-17 Score=138.80 Aligned_cols=70 Identities=19% Similarity=0.268 Sum_probs=61.5
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEc--CccHHHHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLT--NHNKALAGELVNVLR 70 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~--~~~~~~~~~i~~~~~ 70 (121)
+++||||+++++|||++++++|||||+|.++.+|+||+|||||.|+.|.++++.+ +.|...+..++..+.
T Consensus 330 i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~ 401 (742)
T TIGR03817 330 LLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFD 401 (742)
T ss_pred ceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhc
Confidence 5799999999999999999999999999999999999999999999999999986 445555665555544
No 39
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.66 E-value=1.2e-16 Score=130.84 Aligned_cols=66 Identities=29% Similarity=0.460 Sum_probs=60.9
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELV 66 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~ 66 (121)
++|||||+++++|||+|+|++|||||+|.++++|+||+|||||.|..+.+++++++.+....+.+.
T Consensus 275 ~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 275 VKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred CcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999988876665554
No 40
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.61 E-value=7.9e-16 Score=125.66 Aligned_cols=65 Identities=34% Similarity=0.599 Sum_probs=58.1
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCc-cHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNH-NKALAGEL 65 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~-~~~~~~~i 65 (121)
++|||+||..+||||-++|++|||.|.|.+-++|+||||||||+|..|.+++|+... +...+..+
T Consensus 323 ~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 323 VRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred EEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 589999999999999999999999999999999999999999999999999999654 33444443
No 41
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.61 E-value=1.4e-16 Score=118.65 Aligned_cols=76 Identities=32% Similarity=0.657 Sum_probs=66.5
Q ss_pred EEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcC-ccHHHHHHHHHHHHHhcccChHH
Q 038184 4 QVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTN-HNKALAGELVNVLREARQVVPDA 79 (121)
Q Consensus 4 LV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~-~~~~~~~~i~~~~~~~~~~~~~~ 79 (121)
||||++++||+|+..++.|+|||+|.++++|+||+|||||.|..|.+|+|++. ++...+..+.+.......++|+.
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 79999999999999999999999999999999999999999999999999975 45566677766666666666665
No 42
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=2.5e-15 Score=124.01 Aligned_cols=60 Identities=30% Similarity=0.346 Sum_probs=55.7
Q ss_pred cEEEEeccccccCCCC---Ccc-----EEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHH
Q 038184 2 YLQVATDIAARGLDIP---DVE-----VVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKAL 61 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~---~v~-----~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~ 61 (121)
+||||||+++||+||+ +|. +|||||+|.+...|.||+|||||.|..|.+++|++.+|.-+
T Consensus 523 ~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l~ 590 (656)
T PRK12898 523 RITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDLL 590 (656)
T ss_pred cEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHHHH
Confidence 5999999999999999 676 99999999999999999999999999999999999877544
No 43
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.58 E-value=1.2e-15 Score=93.84 Aligned_cols=44 Identities=45% Similarity=0.852 Sum_probs=42.8
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCC
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAG 45 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g 45 (121)
+|||||+++++|+|+|.+++||+|++|+++..|.|++||++|.|
T Consensus 35 ~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 35 RVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp SEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred eEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 69999999999999999999999999999999999999999986
No 44
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=8.1e-15 Score=123.07 Aligned_cols=60 Identities=32% Similarity=0.426 Sum_probs=56.0
Q ss_pred cEEEEeccccccCCC---CCcc-----EEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHH
Q 038184 2 YLQVATDIAARGLDI---PDVE-----VVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKAL 61 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi---~~v~-----~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~ 61 (121)
+|+|||++++||+|| ++|. +||+||+|.+...|+||+|||||.|..|.+++|++.+|.-+
T Consensus 478 ~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~l~ 545 (790)
T PRK09200 478 AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDLL 545 (790)
T ss_pred eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHHHH
Confidence 699999999999999 6998 99999999999999999999999999999999999766533
No 45
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.55 E-value=9.9e-15 Score=124.70 Aligned_cols=71 Identities=15% Similarity=0.263 Sum_probs=58.7
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLRE 71 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~ 71 (121)
++|||||+++++|+|++.+++|||||+|+++..|.||+||++|.|+++.+..++...+....+.|...+..
T Consensus 547 ~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 547 AQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred ccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 46999999999999999999999999999999999999999999999887776654443344444444443
No 46
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.49 E-value=7.2e-14 Score=111.40 Aligned_cols=60 Identities=33% Similarity=0.500 Sum_probs=54.9
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKAL 61 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~ 61 (121)
.||||||+++++|||||+|++||.|++-.|...++||.|||||. +.|.++.+++.+....
T Consensus 426 ~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtrde 485 (542)
T COG1111 426 YNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTRDE 485 (542)
T ss_pred ceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCchHH
Confidence 48999999999999999999999999999999999999999998 8899999998764433
No 47
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.47 E-value=4.3e-14 Score=117.41 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=53.5
Q ss_pred CcEEEEeccccccCCCCCccEEEEeC---CCC---------ChhhhhhhheeceeCCCeeEEEEEEcCccHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYS---FPL---------TTEDYVHRIGRTGQAGKKGVSHPFLTNHNKA 60 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d---~P~---------~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~ 60 (121)
.+||||||+++|||||++|.+||+++ .|. +..+|+||+|||||. +.|.++.|+++.+..
T Consensus 447 ~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~ 517 (675)
T PHA02653 447 PSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLK 517 (675)
T ss_pred eeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhH
Confidence 37999999999999999999999999 675 788999999999999 789999999876643
No 48
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.47 E-value=2.1e-14 Score=112.55 Aligned_cols=69 Identities=39% Similarity=0.656 Sum_probs=62.8
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHH
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLR 70 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~ 70 (121)
++||.||+++||+|+|-.+.|||||+|.+..-|+||+||++|+|+.|++++++.+.+....-.|...+.
T Consensus 313 ~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflg 381 (529)
T KOG0337|consen 313 SILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLG 381 (529)
T ss_pred ceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcC
Confidence 689999999999999999999999999999999999999999999999999999888777666655443
No 49
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.47 E-value=1.3e-13 Score=114.33 Aligned_cols=81 Identities=20% Similarity=0.333 Sum_probs=69.7
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCC-----CCChhhhhhhheeceeCCCeeEEEEEEcC---------ccHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSF-----PLTTEDYVHRIGRTGQAGKKGVSHPFLTN---------HNKALAGELV 66 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~-----P~~~~~y~~r~GR~gR~g~~g~~i~~~~~---------~~~~~~~~i~ 66 (121)
++|||||+++++|+|+|++++||++|. |.+..+|+||+|||||. ..|.+++|++. .+....++++
T Consensus 497 i~vlV~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~ 575 (652)
T PRK05298 497 FDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQ 575 (652)
T ss_pred ceEEEEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999985 78999999999999997 78999999984 4566677777
Q ss_pred HHHHHhcccChHHHHh
Q 038184 67 NVLREARQVVPDALLK 82 (121)
Q Consensus 67 ~~~~~~~~~~~~~l~~ 82 (121)
..+......+|....+
T Consensus 576 ~~~~~~~~~~~~~~~~ 591 (652)
T PRK05298 576 IAYNEEHGITPKTIKK 591 (652)
T ss_pred HHhhhccCCCChhHHH
Confidence 7788888888866643
No 50
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.45 E-value=1e-13 Score=118.19 Aligned_cols=102 Identities=23% Similarity=0.283 Sum_probs=78.6
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHH---hcc---
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLRE---ARQ--- 74 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~---~~~--- 74 (121)
++|+|||=+++||||.|+|..||||.+|.+++.|+|.+|||||.|....+++|++..+...++.+...-.. ..+
T Consensus 536 ~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~~~~~~~~~~~~ 615 (941)
T KOG0351|consen 536 IRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSGNRLSGVKKFTR 615 (941)
T ss_pred CeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHccccccchhhccc
Confidence 58999999999999999999999999999999999999999999999999999998887777666443311 111
Q ss_pred -cChHHHHhhhhhhhhhhhhhhccccccc
Q 038184 75 -VVPDALLKFGTHVKKKESKLYGAHFREI 102 (121)
Q Consensus 75 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 102 (121)
.--.....+++....+.......+|++.
T Consensus 616 ~~~l~~~~~yCen~t~crr~~~l~~fge~ 644 (941)
T KOG0351|consen 616 LLELVQVVTYCENETDCRRKQILEYFGEE 644 (941)
T ss_pred hhhHHHHHHhhcCccchhHHHHHHhcccc
Confidence 1112233555555556666666777665
No 51
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.45 E-value=2.1e-13 Score=112.72 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=51.2
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCC-ChhhhhhhheeceeCCCeeEEEEEEc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPL-TTEDYVHRIGRTGQAGKKGVSHPFLT 55 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~-~~~~y~~r~GR~gR~g~~g~~i~~~~ 55 (121)
++|||||+++++|+|+|++++||+|+.|. ....|.||+||+||.|..|.+++++.
T Consensus 509 ~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 509 VDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred CCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 47999999999999999999999999997 57788889999999999999999993
No 52
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.45 E-value=2.4e-13 Score=113.32 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=51.4
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCC-ChhhhhhhheeceeCCCeeEEEEEEc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPL-TTEDYVHRIGRTGQAGKKGVSHPFLT 55 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~-~~~~y~~r~GR~gR~g~~g~~i~~~~ 55 (121)
++|||||+++++|+|+|++++||+|+.|. ....|.||+||+||.|..|.|++++.
T Consensus 532 ~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 532 IDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred CCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 47999999999999999999999999997 46788889999999999999999995
No 53
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.45 E-value=1.5e-13 Score=117.51 Aligned_cols=57 Identities=23% Similarity=0.323 Sum_probs=52.6
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCC-ChhhhhhhheeceeCCCeeEEEEEEcCc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPL-TTEDYVHRIGRTGQAGKKGVSHPFLTNH 57 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~-~~~~y~~r~GR~gR~g~~g~~i~~~~~~ 57 (121)
++|||||+++++|+|+|++++||++++|. +..+|.||+||+||.|+.|.|++++.+.
T Consensus 713 ~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 713 FQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred CCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 47999999999999999999999999976 5789999999999999999999999643
No 54
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.43 E-value=4e-13 Score=114.55 Aligned_cols=45 Identities=24% Similarity=0.427 Sum_probs=43.0
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCC
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAG 45 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g 45 (121)
++|||||+++++|||+|+|++||+|+.|.++.+|+||+||+||.+
T Consensus 341 i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~ 385 (876)
T PRK13767 341 LKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRL 385 (876)
T ss_pred CeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCC
Confidence 579999999999999999999999999999999999999999864
No 55
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.42 E-value=4.3e-13 Score=111.32 Aligned_cols=67 Identities=18% Similarity=0.364 Sum_probs=59.3
Q ss_pred CcEEEEeccccccCCCCCccEEEEeC-----CCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYS-----FPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNV 68 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d-----~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~ 68 (121)
+.|||||+++++|+|+|++++|+++| .|.+..+|+||+|||||. ..|.+++|++..+..+.+.+.+.
T Consensus 493 i~VLV~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 493 FDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred ceEEEEcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 46899999999999999999999999 899999999999999998 68999999998776665555554
No 56
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.40 E-value=3.6e-13 Score=112.67 Aligned_cols=59 Identities=29% Similarity=0.444 Sum_probs=54.4
Q ss_pred cEEEEeccccccCCCC---------CccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHH
Q 038184 2 YLQVATDIAARGLDIP---------DVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKAL 61 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~---------~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~ 61 (121)
+|+|||++++||+||+ ++.+|++|++|....+ .||+|||||.|..|.+++|++.+|.-+
T Consensus 474 ~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~l~ 541 (762)
T TIGR03714 474 AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDDLI 541 (762)
T ss_pred eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchhhh
Confidence 5899999999999999 9999999999998777 999999999999999999999776533
No 57
>PRK13766 Hef nuclease; Provisional
Probab=99.40 E-value=1.5e-12 Score=109.43 Aligned_cols=57 Identities=32% Similarity=0.493 Sum_probs=51.1
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCcc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHN 58 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~ 58 (121)
++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.+. |.++.++....
T Consensus 424 ~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t 480 (773)
T PRK13766 424 FNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGT 480 (773)
T ss_pred CCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCC
Confidence 4799999999999999999999999999999999999999999865 77777776433
No 58
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.39 E-value=7.7e-13 Score=109.81 Aligned_cols=62 Identities=29% Similarity=0.414 Sum_probs=53.4
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGE 64 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~ 64 (121)
+||||||+++++||||+.|++||.||.-.++...+||.|| ||+ +.|.++++++..+....+.
T Consensus 475 ~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~~~~~E~ 536 (746)
T KOG0354|consen 475 INVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEVIEFER 536 (746)
T ss_pred ccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchhHHHHHH
Confidence 5899999999999999999999999999999999999999 899 5677777777555444433
No 59
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.38 E-value=2.6e-13 Score=107.36 Aligned_cols=59 Identities=37% Similarity=0.683 Sum_probs=54.6
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNK 59 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~ 59 (121)
+++|||||+++|||||..+.++||.-+|.+-..|+||+||+||+.+-|.+|+++.....
T Consensus 559 vkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat~~e 617 (725)
T KOG0349|consen 559 VKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATVPE 617 (725)
T ss_pred eEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeeccch
Confidence 47899999999999999999999999999999999999999999999999999864433
No 60
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.37 E-value=1.3e-12 Score=109.06 Aligned_cols=60 Identities=28% Similarity=0.318 Sum_probs=55.5
Q ss_pred cEEEEeccccccCCCCC-------ccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHH
Q 038184 2 YLQVATDIAARGLDIPD-------VEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKAL 61 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~-------v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~ 61 (121)
+|+|||++++||+||+. .-|||+|++|.+...|.||+|||||.|..|.+..|++.+|.-+
T Consensus 455 ~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l~ 521 (745)
T TIGR00963 455 AVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLM 521 (745)
T ss_pred eEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHHHH
Confidence 69999999999999998 4499999999999999999999999999999999999776544
No 61
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.34 E-value=1.2e-12 Score=86.39 Aligned_cols=53 Identities=49% Similarity=0.923 Sum_probs=49.3
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEE
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPF 53 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~ 53 (121)
.+||++|.++++|+|+|.+++||.++.|++...|.|++||++|.|+.|.++.+
T Consensus 79 ~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 79 IVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CcEEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 36899999999999999999999999999999999999999999988877653
No 62
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.33 E-value=1.3e-12 Score=113.76 Aligned_cols=56 Identities=20% Similarity=0.303 Sum_probs=47.6
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCC-CChhhhhhhheeceeCCCeeEEEEEEcC
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFP-LTTEDYVHRIGRTGQAGKKGVSHPFLTN 56 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P-~~~~~y~~r~GR~gR~g~~g~~i~~~~~ 56 (121)
++|||||+++++|+|+|++++||..+.. .+..+|+||+||+||.|+.|.+++++.+
T Consensus 862 ~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 862 FNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred CCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 4799999999999999999999943332 2445799999999999999999998854
No 63
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.33 E-value=1.8e-12 Score=114.51 Aligned_cols=55 Identities=31% Similarity=0.441 Sum_probs=47.1
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeC-CCeeEEEEEEc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQA-GKKGVSHPFLT 55 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~-g~~g~~i~~~~ 55 (121)
+++||||+.+++|||+++|++||||+.|.++.+|+||+||+||. |..+.++.+..
T Consensus 328 LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~ 383 (1490)
T PRK09751 328 LRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPR 383 (1490)
T ss_pred ceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeC
Confidence 57999999999999999999999999999999999999999986 33344454433
No 64
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.31 E-value=1.2e-12 Score=110.88 Aligned_cols=57 Identities=26% Similarity=0.423 Sum_probs=51.1
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCCh------------------hhhhhhheeceeCCCeeEEEEEEcCccH
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTT------------------EDYVHRIGRTGQAGKKGVSHPFLTNHNK 59 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~------------------~~y~~r~GR~gR~g~~g~~i~~~~~~~~ 59 (121)
+||||||++++||||++|++||++++|... .+|.||+|||||. +.|.++.++++.+.
T Consensus 264 kVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 264 KVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQH 338 (819)
T ss_pred EEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHH
Confidence 699999999999999999999999999742 3589999999999 89999999986543
No 65
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.31 E-value=2.1e-12 Score=108.48 Aligned_cols=58 Identities=31% Similarity=0.445 Sum_probs=54.7
Q ss_pred cEEEEeccccccCCC---CCcc-----EEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccH
Q 038184 2 YLQVATDIAARGLDI---PDVE-----VVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNK 59 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi---~~v~-----~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~ 59 (121)
+|+|||++++||.|| ++|. |||++++|.+...|.|+.|||||.|..|.+..|++.+|.
T Consensus 490 ~VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 490 AVTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred eEEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccch
Confidence 589999999999999 4899 999999999999999999999999999999999987764
No 66
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.31 E-value=2.4e-12 Score=78.44 Aligned_cols=44 Identities=52% Similarity=0.974 Sum_probs=42.3
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCC
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAG 45 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g 45 (121)
.|||+|+++++|+|++.+++||.+++|++...|.|++||++|.|
T Consensus 39 ~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 39 KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 58999999999999999999999999999999999999999975
No 67
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.29 E-value=3.5e-12 Score=98.26 Aligned_cols=51 Identities=27% Similarity=0.451 Sum_probs=43.2
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCee----EEEEEEc
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKG----VSHPFLT 55 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g----~~i~~~~ 55 (121)
+|||||+++++|+|++ +++||+++.| +++|+||+||+||.|+.. .++.|..
T Consensus 280 ~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~ 334 (358)
T TIGR01587 280 FVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITI 334 (358)
T ss_pred eEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEee
Confidence 6999999999999995 8899999877 789999999999988543 5565554
No 68
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.26 E-value=3e-12 Score=108.44 Aligned_cols=57 Identities=21% Similarity=0.412 Sum_probs=50.9
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCCh------------------hhhhhhheeceeCCCeeEEEEEEcCccH
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTT------------------EDYVHRIGRTGQAGKKGVSHPFLTNHNK 59 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~------------------~~y~~r~GR~gR~g~~g~~i~~~~~~~~ 59 (121)
+|||||+++++||||++|++||++++|+.. .+|.||.|||||. ..|.++.++++.+.
T Consensus 267 kVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 267 KVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred EEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 699999999999999999999998888643 4799999999999 69999999985543
No 69
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.25 E-value=1.4e-11 Score=96.46 Aligned_cols=101 Identities=24% Similarity=0.343 Sum_probs=81.7
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhh-------------------------------------------h
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVH-------------------------------------------R 37 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~-------------------------------------------r 37 (121)
|+|+|+|-++++|||-|+|++|||..+|.+++.|.| .
T Consensus 368 iqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfseke 447 (695)
T KOG0353|consen 368 IQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKE 447 (695)
T ss_pred eEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchh
Confidence 579999999999999999999999999999999999 7
Q ss_pred heeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHHHhhhhhhhhhhhhhhccccccc
Q 038184 38 IGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDALLKFGTHVKKKESKLYGAHFREI 102 (121)
Q Consensus 38 ~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 102 (121)
.||+||.+....+|++|.-.|......+..+...-.+.+ -.+..++....+++.-.+..||.|.
T Consensus 448 sgragrd~~~a~cilyy~~~difk~ssmv~~e~~g~q~l-y~mv~y~~d~s~crrv~laehfde~ 511 (695)
T KOG0353|consen 448 SGRAGRDDMKADCILYYGFADIFKISSMVQMENTGIQKL-YEMVRYAADISKCRRVKLAEHFDEA 511 (695)
T ss_pred ccccccCCCcccEEEEechHHHHhHHHHHHHHhhhHHHH-HHHHHHHhhhHHHHHHHHHHHHHhh
Confidence 899999999999999999888887777766555444433 3344566666666666666666543
No 70
>PRK02362 ski2-like helicase; Provisional
Probab=99.24 E-value=9e-12 Score=104.58 Aligned_cols=57 Identities=26% Similarity=0.476 Sum_probs=51.8
Q ss_pred CcEEEEeccccccCCCCCccEEEE----eC-----CCCChhhhhhhheeceeCCCe--eEEEEEEcCc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVIN----YS-----FPLTTEDYVHRIGRTGQAGKK--GVSHPFLTNH 57 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~----~d-----~P~~~~~y~~r~GR~gR~g~~--g~~i~~~~~~ 57 (121)
++|||||+++++|+|+|.+.+||+ || .|.+..+|+||+|||||.|.. |.++++..+.
T Consensus 330 i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 330 IKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred CeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 589999999999999999999998 77 689999999999999999864 8999998754
No 71
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.22 E-value=7.2e-12 Score=109.48 Aligned_cols=57 Identities=23% Similarity=0.489 Sum_probs=50.5
Q ss_pred cEEEEeccccccCCCCCccEEEEeC---------------CCC---ChhhhhhhheeceeCCCeeEEEEEEcCccH
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYS---------------FPL---TTEDYVHRIGRTGQAGKKGVSHPFLTNHNK 59 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d---------------~P~---~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~ 59 (121)
+|||||+++++|||||+|.+||+++ +|. +..+|.||+|||||. ..|.++.++++.+.
T Consensus 339 kIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 339 RIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred eEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 7999999999999999999999986 454 447899999999999 78999999986553
No 72
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.21 E-value=2.3e-11 Score=96.18 Aligned_cols=67 Identities=28% Similarity=0.421 Sum_probs=61.9
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVN 67 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~ 67 (121)
+.||+||..++||+|-|+|.+|||+++|.++.-|.|..|||||.|...++-++|+.+|...+..+..
T Consensus 306 ~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 306 IPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred CCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHh
Confidence 4699999999999999999999999999999999999999999999999999999888777666643
No 73
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.17 E-value=1.8e-11 Score=104.41 Aligned_cols=59 Identities=24% Similarity=0.340 Sum_probs=53.6
Q ss_pred cEEEEeccccccCCCC---Ccc-----EEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHH
Q 038184 2 YLQVATDIAARGLDIP---DVE-----VVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKA 60 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~---~v~-----~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~ 60 (121)
+|+|||++++||+||+ .|. +||+++.|.+...|.||+|||||.|..|.++.|++.+|.-
T Consensus 648 ~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 648 AVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred eEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 6999999999999999 564 4599999999999999999999999999999999977654
No 74
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.16 E-value=2.1e-11 Score=106.67 Aligned_cols=57 Identities=21% Similarity=0.387 Sum_probs=51.0
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCC------------------ChhhhhhhheeceeCCCeeEEEEEEcCccH
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPL------------------TTEDYVHRIGRTGQAGKKGVSHPFLTNHNK 59 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~------------------~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~ 59 (121)
+|||||+++++|||||+|.+||++++|. +..+|.||.|||||.+ .|.++.+++..+.
T Consensus 332 kIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 332 RIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred eEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 6999999999999999999999999654 4579999999999997 9999999986543
No 75
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.13 E-value=1.4e-10 Score=97.17 Aligned_cols=71 Identities=15% Similarity=0.251 Sum_probs=56.6
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCC-ChhhhhhhheeceeCCCeeEE-------EEEEcCcc--HHHHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPL-TTEDYVHRIGRTGQAGKKGVS-------HPFLTNHN--KALAGELVNVLR 70 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~-~~~~y~~r~GR~gR~g~~g~~-------i~~~~~~~--~~~~~~i~~~~~ 70 (121)
+++||+|+++.+|+|+|++++||+++.|. +...|+||+||++|.+..|.+ ++++++.. .....+-..++.
T Consensus 543 i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~ 622 (732)
T TIGR00603 543 VNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLV 622 (732)
T ss_pred ccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHH
Confidence 47899999999999999999999999984 999999999999998866554 77887543 333344455554
Q ss_pred H
Q 038184 71 E 71 (121)
Q Consensus 71 ~ 71 (121)
.
T Consensus 623 ~ 623 (732)
T TIGR00603 623 D 623 (732)
T ss_pred H
Confidence 4
No 76
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.13 E-value=4.6e-11 Score=101.10 Aligned_cols=51 Identities=20% Similarity=0.295 Sum_probs=43.5
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCe-eEEEEEEc
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKK-GVSHPFLT 55 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~-g~~i~~~~ 55 (121)
+|||||+++++||||+. ++||++..| .++|+||+||+||.|+. +.+++++.
T Consensus 338 ~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~ 389 (844)
T TIGR02621 338 VYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVH 389 (844)
T ss_pred eEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEe
Confidence 58999999999999986 899998877 68999999999999985 44466654
No 77
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.10 E-value=9.8e-11 Score=94.64 Aligned_cols=53 Identities=17% Similarity=0.144 Sum_probs=46.3
Q ss_pred cEEEEe-ccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEE
Q 038184 2 YLQVAT-DIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFL 54 (121)
Q Consensus 2 ~iLV~T-d~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~ 54 (121)
+||||| +++++|+|+|++++||++++|.+...|+||+||++|.+..+....++
T Consensus 396 ~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 396 IIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred eEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 589998 89999999999999999999999999999999999987655444444
No 78
>PRK00254 ski2-like helicase; Provisional
Probab=99.08 E-value=1.5e-10 Score=96.98 Aligned_cols=58 Identities=19% Similarity=0.366 Sum_probs=49.6
Q ss_pred CcEEEEeccccccCCCCCccEEEE-------eCCCC-ChhhhhhhheeceeCC--CeeEEEEEEcCcc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVIN-------YSFPL-TTEDYVHRIGRTGQAG--KKGVSHPFLTNHN 58 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~-------~d~P~-~~~~y~~r~GR~gR~g--~~g~~i~~~~~~~ 58 (121)
++|||||+++++|+|+|.+..||. |+.|. ...+|.||+|||||.| ..|.++++.++.+
T Consensus 322 i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 322 IKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred CeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 589999999999999999999994 66655 4669999999999975 6799999987644
No 79
>PRK01172 ski2-like helicase; Provisional
Probab=98.95 E-value=1.1e-09 Score=91.26 Aligned_cols=56 Identities=27% Similarity=0.441 Sum_probs=45.4
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCC---------CCChhhhhhhheeceeCC--CeeEEEEEEcCc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSF---------PLTTEDYVHRIGRTGQAG--KKGVSHPFLTNH 57 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~---------P~~~~~y~~r~GR~gR~g--~~g~~i~~~~~~ 57 (121)
++|||||+++++|+|+|.. .||++|. |-+..+|.||+|||||.| ..|.++++....
T Consensus 312 i~VLvaT~~la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 312 IKVIVATPTLAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred CeEEEecchhhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 5799999999999999986 5555554 457889999999999998 467788777543
No 80
>PRK05580 primosome assembly protein PriA; Validated
Probab=98.90 E-value=2.3e-09 Score=89.57 Aligned_cols=58 Identities=24% Similarity=0.313 Sum_probs=48.3
Q ss_pred CcEEEEeccccccCCCCCccEEE--EeCCCCCh----------hhhhhhheeceeCCCeeEEEEEEcCcc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVI--NYSFPLTT----------EDYVHRIGRTGQAGKKGVSHPFLTNHN 58 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi--~~d~P~~~----------~~y~~r~GR~gR~g~~g~~i~~~~~~~ 58 (121)
++|||+|+++++|+|+|+|++|+ ++|.+.+. ..|+|++||+||.+..|.++......+
T Consensus 481 ~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 481 ADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred CCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCC
Confidence 36999999999999999999984 55655543 578999999999999999998775433
No 81
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=98.90 E-value=2.9e-09 Score=89.99 Aligned_cols=56 Identities=29% Similarity=0.485 Sum_probs=48.9
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheecee-CCCeeEEEEEEcC
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQ-AGKKGVSHPFLTN 56 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR-~g~~g~~i~~~~~ 56 (121)
++.+|||+.++.|||+.++++||+|..|.++..++||+||+|. .+.....+.+...
T Consensus 305 lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 305 LKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred ceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 4789999999999999999999999999999999999999994 5555566666554
No 82
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.80 E-value=7.9e-09 Score=83.85 Aligned_cols=55 Identities=22% Similarity=0.289 Sum_probs=45.7
Q ss_pred CcEEEEeccccccCCCCCccEE--EEeCCCCC----------hhhhhhhheeceeCCCeeEEEEEEc
Q 038184 1 MYLQVATDIAARGLDIPDVEVV--INYSFPLT----------TEDYVHRIGRTGQAGKKGVSHPFLT 55 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~V--i~~d~P~~----------~~~y~~r~GR~gR~g~~g~~i~~~~ 55 (121)
+.|||+|+++++|+|+|+|++| +++|.+.. ...|+|++||+||.+..|.++....
T Consensus 313 ~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~ 379 (505)
T TIGR00595 313 ADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTY 379 (505)
T ss_pred CCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeC
Confidence 3699999999999999999987 56775322 4678999999999999999886553
No 83
>PRK14701 reverse gyrase; Provisional
Probab=98.63 E-value=1.3e-08 Score=91.54 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=46.1
Q ss_pred CcEEEEe----ccccccCCCCC-ccEEEEeCCCC---Chhhhhhhh-------------eeceeCCCeeEEEEEEc
Q 038184 1 MYLQVAT----DIAARGLDIPD-VEVVINYSFPL---TTEDYVHRI-------------GRTGQAGKKGVSHPFLT 55 (121)
Q Consensus 1 i~iLV~T----d~~~~GlDi~~-v~~Vi~~d~P~---~~~~y~~r~-------------GR~gR~g~~g~~i~~~~ 55 (121)
++||||| ++++||||+|+ |.+|||||+|. +++.|.|.. ||+||.|..+.+++.+.
T Consensus 379 ~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~ 454 (1638)
T PRK14701 379 IDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVF 454 (1638)
T ss_pred CCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhH
Confidence 5799999 59999999998 99999999999 888888876 99999887655553333
No 84
>PRK09694 helicase Cas3; Provisional
Probab=98.59 E-value=2e-07 Score=79.88 Aligned_cols=42 Identities=26% Similarity=0.457 Sum_probs=38.7
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCC
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGK 46 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~ 46 (121)
+|||||+++++|+|+ +++.+|....| ++.|+||+||++|.++
T Consensus 623 ~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 623 RILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred eEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 599999999999999 68999998888 6899999999999886
No 85
>PRK09401 reverse gyrase; Reviewed
Probab=98.53 E-value=4.4e-08 Score=86.07 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=38.9
Q ss_pred CcEEEE----eccccccCCCCC-ccEEEEeCCCC------Chhhhhhhheece
Q 038184 1 MYLQVA----TDIAARGLDIPD-VEVVINYSFPL------TTEDYVHRIGRTG 42 (121)
Q Consensus 1 i~iLV~----Td~~~~GlDi~~-v~~Vi~~d~P~------~~~~y~~r~GR~g 42 (121)
++|||| ||+++||||+|+ |++|||||+|. ..+.|.||+||+-
T Consensus 377 ~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 377 VDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred CCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHH
Confidence 579999 699999999999 89999999999 6789999999985
No 86
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.47 E-value=1.7e-07 Score=81.33 Aligned_cols=54 Identities=19% Similarity=0.308 Sum_probs=47.6
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEE--EEEEcC
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVS--HPFLTN 56 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~--i~~~~~ 56 (121)
+|++|.+++.|||+..+++||+||+||++..+.|++||+-|.|+...+ +-|++.
T Consensus 543 fLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~ 598 (1033)
T PLN03142 543 FLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTE 598 (1033)
T ss_pred EEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeC
Confidence 689999999999999999999999999999999999999999976544 344443
No 87
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.34 E-value=6.8e-07 Score=73.48 Aligned_cols=60 Identities=20% Similarity=0.317 Sum_probs=50.8
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEc--CccHHHH
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLT--NHNKALA 62 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~--~~~~~~~ 62 (121)
-+|+|++++-||||.+++.|++..+|-++..+-|..|||||.++...++.+.. |-|...+
T Consensus 586 giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~ 647 (1034)
T KOG4150|consen 586 GIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYM 647 (1034)
T ss_pred EEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhh
Confidence 37999999999999999999999999999999999999999988776665543 4444333
No 88
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.31 E-value=8.2e-07 Score=77.93 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=41.9
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCC
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAG 45 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g 45 (121)
+|||+++++..|+|+|.|.+||.+..|.+...|+|++||+.|..
T Consensus 758 ~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 758 NIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred eEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCC
Confidence 58999999999999999999999999999999999999999953
No 89
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.22 E-value=2.4e-06 Score=74.41 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=48.7
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCC-ChhhhhhhheeceeCCCeeEEEEEEcC
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPL-TTEDYVHRIGRTGQAGKKGVSHPFLTN 56 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~-~~~~y~~r~GR~gR~g~~g~~i~~~~~ 56 (121)
+|||||-+.+-|||||+++.+|..+.-. ...++.|-.||+||.++.+.|+.++.+
T Consensus 857 dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~ 912 (1139)
T COG1197 857 DVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPP 912 (1139)
T ss_pred CEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecC
Confidence 6999999999999999999877765433 478999999999999999999999975
No 90
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.15 E-value=4.1e-06 Score=67.08 Aligned_cols=43 Identities=26% Similarity=0.461 Sum_probs=41.3
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheecee
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQ 43 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR 43 (121)
+++||++.++.+|+|+|+++++|......+...|+||+||.=|
T Consensus 333 ~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 333 IKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred CCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 4789999999999999999999999999999999999999988
No 91
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=98.10 E-value=9.7e-06 Score=67.45 Aligned_cols=59 Identities=17% Similarity=0.221 Sum_probs=51.0
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCC-ChhhhhhhheeceeCCCeeEEEEEEcCccH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPL-TTEDYVHRIGRTGQAGKKGVSHPFLTNHNK 59 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~-~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~ 59 (121)
++|||||.|.+=|+|+|+.++.|.+|.-+ ...++=|=.||+||.+..+.|++++.+...
T Consensus 534 ~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~ 593 (677)
T COG1200 534 IDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLS 593 (677)
T ss_pred CcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCC
Confidence 57999999999999999999999987654 366667788999999999999999987663
No 92
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=98.06 E-value=2.3e-06 Score=73.40 Aligned_cols=55 Identities=27% Similarity=0.520 Sum_probs=50.1
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCC-ChhhhhhhheeceeCCCeeEEEEEEc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPL-TTEDYVHRIGRTGQAGKKGVSHPFLT 55 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~-~~~~y~~r~GR~gR~g~~g~~i~~~~ 55 (121)
+.++++|++++-|+|+.+++.||++..|. +..+|.||.||+||.++.+..+..+.
T Consensus 365 ~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 365 LLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred ccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 35789999999999999999999999999 89999999999999997777776665
No 93
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=97.91 E-value=1.5e-05 Score=70.47 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=27.7
Q ss_pred CcEEEE----eccccccCCCCC-ccEEEEeCCCCC
Q 038184 1 MYLQVA----TDIAARGLDIPD-VEVVINYSFPLT 30 (121)
Q Consensus 1 i~iLV~----Td~~~~GlDi~~-v~~Vi~~d~P~~ 30 (121)
++|||| ||+++||||+|+ |++|||||+|..
T Consensus 376 ~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 376 IDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred CCEEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 479999 599999999999 899999999976
No 94
>COG1204 Superfamily II helicase [General function prediction only]
Probab=97.88 E-value=2.1e-05 Score=66.91 Aligned_cols=55 Identities=27% Similarity=0.472 Sum_probs=45.4
Q ss_pred CcEEEEeccccccCCCCCccEEE----EeC-----CCCChhhhhhhheeceeCC--CeeEEEEEEc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVI----NYS-----FPLTTEDYVHRIGRTGQAG--KKGVSHPFLT 55 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi----~~d-----~P~~~~~y~~r~GR~gR~g--~~g~~i~~~~ 55 (121)
|+|||||+.++.|+++|.-..|| -|| .+-++-+|+|+.|||||.| ..|.++.+.+
T Consensus 341 ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~ 406 (766)
T COG1204 341 IKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILAT 406 (766)
T ss_pred ceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEec
Confidence 68999999999999999776655 367 6667889999999999988 4567777774
No 95
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.87 E-value=2.1e-05 Score=64.19 Aligned_cols=64 Identities=17% Similarity=0.315 Sum_probs=52.8
Q ss_pred cEEEEeccccccCCCCCccEEEEeCC-----CCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHH
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSF-----PLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELV 66 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~-----P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~ 66 (121)
.|||.-+.+-+|||+|.|.+|..+|. .++-.+++|-+|||+|. -.|.+|++...--..+.+.+.
T Consensus 498 DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN-~~GkvIlYAD~iT~sM~~Ai~ 566 (663)
T COG0556 498 DVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAID 566 (663)
T ss_pred cEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhc-cCCeEEEEchhhhHHHHHHHH
Confidence 48999999999999999999999874 56789999999999998 579999998754444444443
No 96
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=97.79 E-value=2.5e-05 Score=67.20 Aligned_cols=56 Identities=23% Similarity=0.399 Sum_probs=45.9
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCC---------ChhhhhhhheeceeCC--CeeEEEEEEcCc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPL---------TTEDYVHRIGRTGQAG--KKGVSHPFLTNH 57 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~---------~~~~y~~r~GR~gR~g--~~g~~i~~~~~~ 57 (121)
++||+||..+++|+++|.-..|+.- +-. .+..|.|+.|||||.| ..|.+|.+....
T Consensus 657 VKVLFATETFAMGVNMPARtvVF~S-l~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 657 VKVLFATETFAMGVNMPARTVVFSS-LRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred eEEEeehhhhhhhcCCCceeEEeee-hhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 5899999999999999988777652 222 3789999999999988 578888888644
No 97
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=97.73 E-value=1.5e-05 Score=67.21 Aligned_cols=55 Identities=24% Similarity=0.479 Sum_probs=44.6
Q ss_pred CcEEEEeccccccCCCCCccEEEEe----CCC----CChhhhhhhheeceeCC--CeeEEEEEEc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINY----SFP----LTTEDYVHRIGRTGQAG--KKGVSHPFLT 55 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~----d~P----~~~~~y~~r~GR~gR~g--~~g~~i~~~~ 55 (121)
+++|.||..++.||++|.-..|+.- |=- -+.-.|+|+.|||||.| ..|.+|++++
T Consensus 473 vKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiD 537 (1041)
T KOG0948|consen 473 VKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMID 537 (1041)
T ss_pred HHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEec
Confidence 4789999999999999988877652 110 03668999999999988 5799999997
No 98
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=97.71 E-value=0.00023 Score=60.97 Aligned_cols=58 Identities=28% Similarity=0.302 Sum_probs=50.6
Q ss_pred cEEEEeccccccCCCCCc--------------------------------------cEEEEeCCCCChhhhhhhheecee
Q 038184 2 YLQVATDIAARGLDIPDV--------------------------------------EVVINYSFPLTTEDYVHRIGRTGQ 43 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v--------------------------------------~~Vi~~d~P~~~~~y~~r~GR~gR 43 (121)
+|+|||++++||+||+-= =|||-...|.+..-=-|-.||+||
T Consensus 480 ~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagR 559 (830)
T PRK12904 480 AVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGR 559 (830)
T ss_pred eEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhccccc
Confidence 699999999999999642 178888899998888899999999
Q ss_pred CCCeeEEEEEEcCccH
Q 038184 44 AGKKGVSHPFLTNHNK 59 (121)
Q Consensus 44 ~g~~g~~i~~~~~~~~ 59 (121)
-|..|.+-.|++-+|.
T Consensus 560 QGdpGss~f~lSleD~ 575 (830)
T PRK12904 560 QGDPGSSRFYLSLEDD 575 (830)
T ss_pred CCCCCceeEEEEcCcH
Confidence 9999999999986654
No 99
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=97.70 E-value=6.6e-05 Score=64.45 Aligned_cols=65 Identities=31% Similarity=0.515 Sum_probs=54.1
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCC----CCChhhhhhhheeceeCC--CeeEEEEEEcCccHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSF----PLTTEDYVHRIGRTGQAG--KKGVSHPFLTNHNKALAGEL 65 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~----P~~~~~y~~r~GR~gR~g--~~g~~i~~~~~~~~~~~~~i 65 (121)
+.|++||+.++-|++.|..+.++..-. +.+.-+|.|++|||||+| ..|.+++.+.+.+...+.++
T Consensus 549 i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 549 IFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVREL 619 (1008)
T ss_pred eEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHH
Confidence 468999999999999999998887532 235779999999999987 57889999998887776654
No 100
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.65 E-value=7.1e-05 Score=61.42 Aligned_cols=54 Identities=26% Similarity=0.442 Sum_probs=41.5
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCC---------CChhhhhhhheeceeCCC---eeEEEEEEc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFP---------LTTEDYVHRIGRTGQAGK---KGVSHPFLT 55 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P---------~~~~~y~~r~GR~gR~g~---~g~~i~~~~ 55 (121)
++||||||+.+|||++ +++-||-|++= -+..+-.|-.|||||.|. .|.+.+|..
T Consensus 410 ~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~ 475 (700)
T KOG0953|consen 410 CDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHS 475 (700)
T ss_pred cceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeH
Confidence 4799999999999995 57777777654 346677899999999874 466665543
No 101
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=97.61 E-value=0.00033 Score=60.22 Aligned_cols=58 Identities=26% Similarity=0.349 Sum_probs=49.9
Q ss_pred cEEEEeccccccCCCCCcc--------EEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccH
Q 038184 2 YLQVATDIAARGLDIPDVE--------VVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNK 59 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~--------~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~ 59 (121)
.|.|||++++||-||.--. |||....|.+..-=-|-.||+||-|..|.+-.|++-+|.
T Consensus 476 aVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~ 541 (925)
T PRK12903 476 AITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQ 541 (925)
T ss_pred eEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchH
Confidence 4789999999999986433 899999999977777999999999999999999886554
No 102
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=97.57 E-value=7.8e-05 Score=63.20 Aligned_cols=51 Identities=25% Similarity=0.471 Sum_probs=42.2
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCC--CeeEEEEEEc
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAG--KKGVSHPFLT 55 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g--~~g~~i~~~~ 55 (121)
.|+|||+|.+-|+|+. .+.+|. =|..+.+.+||.||++|.| ..|.++.+..
T Consensus 496 ~IvVaTQVIEagvDid-fd~mIT--e~aPidSLIQR~GRv~R~g~~~~~~~~v~~~ 548 (733)
T COG1203 496 FIVVATQVIEAGVDID-FDVLIT--ELAPIDSLIQRAGRVNRHGKKENGKIYVYND 548 (733)
T ss_pred eEEEEeeEEEEEeccc-cCeeee--cCCCHHHHHHHHHHHhhcccccCCceeEeec
Confidence 4899999999999976 676665 3456889999999999999 6777777765
No 103
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=97.50 E-value=0.00044 Score=54.12 Aligned_cols=58 Identities=26% Similarity=0.410 Sum_probs=43.1
Q ss_pred CcEEEEeccccccCCCCCccEEE-EeCCC-CChhhhhhhheeceeCCC--eeEEEEEEcCcc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVI-NYSFP-LTTEDYVHRIGRTGQAGK--KGVSHPFLTNHN 58 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi-~~d~P-~~~~~y~~r~GR~gR~g~--~g~~i~~~~~~~ 58 (121)
+.|||+|.+++||+-+|+|+..+ .-.-+ .+-..++|-.||+||.-. .|.++.|-....
T Consensus 356 ~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~s 417 (441)
T COG4098 356 ITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKS 417 (441)
T ss_pred eEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccch
Confidence 46899999999999999999644 33322 367789999999999543 566666655433
No 104
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.49 E-value=0.00023 Score=60.35 Aligned_cols=58 Identities=28% Similarity=0.336 Sum_probs=45.1
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCC--CCC----------hhhhhhhheeceeCCCeeEEEEEEcCcc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSF--PLT----------TEDYVHRIGRTGQAGKKGVSHPFLTNHN 58 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~--P~~----------~~~y~~r~GR~gR~g~~g~~i~~~~~~~ 58 (121)
+.|||.|.+++.|.|+|++.+|.-.|. -.. ..-|.|-.|||||.+..|.++.-...-+
T Consensus 535 ~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~ 604 (730)
T COG1198 535 ADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPD 604 (730)
T ss_pred CCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCC
Confidence 369999999999999999998655443 222 4456889999999999998887775444
No 105
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=97.26 E-value=0.00012 Score=60.47 Aligned_cols=58 Identities=19% Similarity=0.404 Sum_probs=45.2
Q ss_pred CcEEEEeccccccCCCCCccEEEE---eCCCC-ChhhhhhhheeceeCC--CeeEEEEEEcCcc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVIN---YSFPL-TTEDYVHRIGRTGQAG--KKGVSHPFLTNHN 58 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~---~d~P~-~~~~y~~r~GR~gR~g--~~g~~i~~~~~~~ 58 (121)
+.++|+|-+++-|+|+|.-+.|+- ...-| ++..|.|++|||||.+ ..|.+++++.+.-
T Consensus 491 l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~ 554 (830)
T COG1202 491 LAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGK 554 (830)
T ss_pred cceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCCh
Confidence 357899999999999998875543 12222 6899999999999977 5789999987543
No 106
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=97.25 E-value=0.001 Score=57.39 Aligned_cols=58 Identities=26% Similarity=0.290 Sum_probs=48.0
Q ss_pred cEEEEeccccccCCCCCc--------------------------------------cEEEEeCCCCChhhhhhhheecee
Q 038184 2 YLQVATDIAARGLDIPDV--------------------------------------EVVINYSFPLTTEDYVHRIGRTGQ 43 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v--------------------------------------~~Vi~~d~P~~~~~y~~r~GR~gR 43 (121)
.|+|||++++||+||.-= =|||-..-+.+..-=-|=.||+||
T Consensus 494 ~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGR 573 (896)
T PRK13104 494 AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGR 573 (896)
T ss_pred cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhcccccc
Confidence 489999999999998621 168888888887666788899999
Q ss_pred CCCeeEEEEEEcCccH
Q 038184 44 AGKKGVSHPFLTNHNK 59 (121)
Q Consensus 44 ~g~~g~~i~~~~~~~~ 59 (121)
-|..|.+-.|++-+|.
T Consensus 574 QGDPGss~f~lSleD~ 589 (896)
T PRK13104 574 QGDPGSSRFYLSLEDN 589 (896)
T ss_pred CCCCCceEEEEEcCcH
Confidence 9999999999986654
No 107
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=97.20 E-value=0.0011 Score=57.20 Aligned_cols=58 Identities=26% Similarity=0.323 Sum_probs=48.7
Q ss_pred cEEEEeccccccCCCCC--------------------------------c-----cEEEEeCCCCChhhhhhhheeceeC
Q 038184 2 YLQVATDIAARGLDIPD--------------------------------V-----EVVINYSFPLTTEDYVHRIGRTGQA 44 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~--------------------------------v-----~~Vi~~d~P~~~~~y~~r~GR~gR~ 44 (121)
.|+|||++++||.||.- | =|||-...|.+..-=-|=.||+||-
T Consensus 499 ~VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQ 578 (908)
T PRK13107 499 AVTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQ 578 (908)
T ss_pred cEEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccC
Confidence 48999999999999862 1 1688888888877667888999999
Q ss_pred CCeeEEEEEEcCccH
Q 038184 45 GKKGVSHPFLTNHNK 59 (121)
Q Consensus 45 g~~g~~i~~~~~~~~ 59 (121)
|..|.+-.|++-+|.
T Consensus 579 GDPGss~f~lSlED~ 593 (908)
T PRK13107 579 GDAGSSRFYLSMEDS 593 (908)
T ss_pred CCCCceeEEEEeCcH
Confidence 999999999986664
No 108
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.15 E-value=0.00036 Score=59.99 Aligned_cols=56 Identities=25% Similarity=0.446 Sum_probs=46.2
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCC------------------ChhhhhhhheeceeCCCeeEEEEEEcCcc
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPL------------------TTEDYVHRIGRTGQAGKKGVSHPFLTNHN 58 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~------------------~~~~y~~r~GR~gR~g~~g~~i~~~~~~~ 58 (121)
+|+++|++++-+|-|++|.+||.-.+-+ +-.+-.||.|||||. ..|+|+=+++.++
T Consensus 315 KVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~ 388 (845)
T COG1643 315 KVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEED 388 (845)
T ss_pred eEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccC-CCceEEEecCHHH
Confidence 3999999999999999999999654433 345668999999999 5799999998533
No 109
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=97.08 E-value=0.0038 Score=54.30 Aligned_cols=59 Identities=29% Similarity=0.349 Sum_probs=50.7
Q ss_pred cEEEEeccccccCCCC---Ccc-----EEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHH
Q 038184 2 YLQVATDIAARGLDIP---DVE-----VVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKA 60 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~---~v~-----~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~ 60 (121)
.|-|||++++||-||. .|. |||-...|.+..---|-.||+||-|..|.+-.|++-+|.-
T Consensus 618 ~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlEDdL 684 (970)
T PRK12899 618 AVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDRL 684 (970)
T ss_pred cEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcchHH
Confidence 3789999999999984 222 7999999999999999999999999999999999866643
No 110
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.00041 Score=59.29 Aligned_cols=52 Identities=27% Similarity=0.480 Sum_probs=42.2
Q ss_pred EEEEeccccccCCCCCccEEEEe--------CCCCChhhh----------hhhheeceeCCCeeEEEEEEc
Q 038184 3 LQVATDIAARGLDIPDVEVVINY--------SFPLTTEDY----------VHRIGRTGQAGKKGVSHPFLT 55 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~--------d~P~~~~~y----------~~r~GR~gR~g~~g~~i~~~~ 55 (121)
++|+|+|++--|-||+|.+||.. |--..+.+| -||.|||||.| .|.|+-+|+
T Consensus 633 cVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYS 702 (1172)
T KOG0926|consen 633 CVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYS 702 (1172)
T ss_pred EEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhh
Confidence 57999999999999999999965 433344444 58999999985 689998886
No 111
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.95 E-value=0.00075 Score=56.67 Aligned_cols=53 Identities=30% Similarity=0.455 Sum_probs=43.7
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCC------------------ChhhhhhhheeceeCCCeeEEEEEEc
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPL------------------TTEDYVHRIGRTGQAGKKGVSHPFLT 55 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~------------------~~~~y~~r~GR~gR~g~~g~~i~~~~ 55 (121)
+|++||++++--|-|++|.+||.-.+-. +-.+=.||.|||||.| .|.|+-+|+
T Consensus 534 KVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt 604 (902)
T KOG0923|consen 534 KVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYT 604 (902)
T ss_pred eEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeec
Confidence 5899999999999999999999654433 2344479999999996 789998888
No 112
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=96.93 E-value=0.0011 Score=56.35 Aligned_cols=51 Identities=12% Similarity=0.183 Sum_probs=46.5
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEE
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPF 53 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~ 53 (121)
+|.+|-+.+.||++-+.+.||.||.+|+|..=.|.++|+-|.|++..++.+
T Consensus 651 fLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 651 FLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred EEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 468899999999999999999999999999999999999999988766544
No 113
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=96.86 E-value=0.0023 Score=54.33 Aligned_cols=58 Identities=29% Similarity=0.323 Sum_probs=49.6
Q ss_pred cEEEEeccccccCCCCC----------cc-----EEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccH
Q 038184 2 YLQVATDIAARGLDIPD----------VE-----VVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNK 59 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~----------v~-----~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~ 59 (121)
.|-|||++++||-||.- |. |||-...|.+..-=-|-.||+||-|..|.+-.|++-+|.
T Consensus 477 aVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 477 AVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred cEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcchh
Confidence 37899999999999862 21 799999999988888999999999999999999985554
No 114
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.66 E-value=0.0012 Score=55.70 Aligned_cols=54 Identities=33% Similarity=0.572 Sum_probs=44.2
Q ss_pred cEEEEeccccccCCCCCccEEEEeCC------------------CCChhhhhhhheeceeCCCeeEEEEEEcC
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSF------------------PLTTEDYVHRIGRTGQAGKKGVSHPFLTN 56 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~------------------P~~~~~y~~r~GR~gR~g~~g~~i~~~~~ 56 (121)
+++|||++++--|-|+++.+||...+ |-+-.+=-||.|||||.| .|.|+-+|+.
T Consensus 625 K~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe 696 (1042)
T KOG0924|consen 625 KCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTE 696 (1042)
T ss_pred eEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhh
Confidence 58999999999999999999987643 333445578999999985 7899999984
No 115
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=96.62 E-value=0.0014 Score=56.76 Aligned_cols=54 Identities=28% Similarity=0.389 Sum_probs=44.1
Q ss_pred cEEEEeccccccCCCCCccEEEEe--------CCCCChh----------hhhhhheeceeCCCeeEEEEEEcC
Q 038184 2 YLQVATDIAARGLDIPDVEVVINY--------SFPLTTE----------DYVHRIGRTGQAGKKGVSHPFLTN 56 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~--------d~P~~~~----------~y~~r~GR~gR~g~~g~~i~~~~~ 56 (121)
+|+++|++++-.|-|++|-+||.. |.-.+.. .=.||.|||||. ..|.++.+++.
T Consensus 472 KIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~ 543 (924)
T KOG0920|consen 472 KIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTR 543 (924)
T ss_pred hhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeech
Confidence 589999999999999999999864 4433322 337999999999 78999999974
No 116
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=96.58 E-value=0.0019 Score=53.88 Aligned_cols=57 Identities=26% Similarity=0.472 Sum_probs=46.7
Q ss_pred cEEEEeccccccCCCCCccEEEEeCC------------------CCChhhhhhhheeceeCCCeeEEEEEEcCccH
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSF------------------PLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNK 59 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~------------------P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~ 59 (121)
+|+++|++++--|-|+++.+||.-.+ |-+-.+=.||.|||||.+ .|.++-+|+.++.
T Consensus 318 KvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 318 KVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY 392 (674)
T ss_pred eEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH
Confidence 58999999999999999999986433 345566789999999994 7999999986543
No 117
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=96.44 E-value=0.0065 Score=53.34 Aligned_cols=58 Identities=26% Similarity=0.384 Sum_probs=49.7
Q ss_pred cEEEEeccccccCCCC---Cc-----cEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccH
Q 038184 2 YLQVATDIAARGLDIP---DV-----EVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNK 59 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~---~v-----~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~ 59 (121)
.|-|||++++||-||. .| =|||-...|.|..---|-.||+||-|..|.+-.|++-+|.
T Consensus 678 aVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 678 TVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred cEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 3779999999999986 22 2788889999988889999999999999999999986554
No 118
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=96.33 E-value=0.0094 Score=50.97 Aligned_cols=67 Identities=15% Similarity=0.197 Sum_probs=53.2
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEE--EEcC---ccHHHHHHHHHHH
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHP--FLTN---HNKALAGELVNVL 69 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~--~~~~---~~~~~~~~i~~~~ 69 (121)
+|++|-|.+-|+++...+-||.||+-|+|.+=.|..-||.|.|+..-+++ +++. +|.-..++|.+..
T Consensus 602 FLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~ 673 (923)
T KOG0387|consen 602 FLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQF 673 (923)
T ss_pred EEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999997654443 3443 3444555554443
No 119
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=96.29 E-value=0.0046 Score=54.23 Aligned_cols=56 Identities=25% Similarity=0.381 Sum_probs=44.1
Q ss_pred CcEEEEeccccccCCCCCccEEEE----eC----CCCChhhhhhhheeceeCC--CeeEEEEEEcC
Q 038184 1 MYLQVATDIAARGLDIPDVEVVIN----YS----FPLTTEDYVHRIGRTGQAG--KKGVSHPFLTN 56 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~----~d----~P~~~~~y~~r~GR~gR~g--~~g~~i~~~~~ 56 (121)
++|+.+|.+++.|+++|.=+.|+- +| -+-++..|.|..|||||.| ..|.+|+.-.+
T Consensus 471 vkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 471 VKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred eeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 579999999999999997776553 22 2345889999999999988 46888877543
No 120
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=96.11 E-value=0.014 Score=51.21 Aligned_cols=57 Identities=23% Similarity=0.355 Sum_probs=43.2
Q ss_pred CcEEEEeccccccCCCCCccEEEE----eCCCC------ChhhhhhhheeceeCC--CeeEEEEEEcCc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVIN----YSFPL------TTEDYVHRIGRTGQAG--KKGVSHPFLTNH 57 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~----~d~P~------~~~~y~~r~GR~gR~g--~~g~~i~~~~~~ 57 (121)
++||+||..++=|+++|+-..+|- ||.-. ..-+-+|-.|||||.+ ..|.++.+.+..
T Consensus 423 i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~d 491 (1230)
T KOG0952|consen 423 IKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRD 491 (1230)
T ss_pred ceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEeccc
Confidence 689999999999999997654442 44333 2556799999999954 779998888743
No 121
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=96.07 E-value=0.013 Score=51.30 Aligned_cols=62 Identities=23% Similarity=0.297 Sum_probs=44.6
Q ss_pred cEEEEeccccccCCCCCccEEEEeC-CCCChhhhhhhheeceeCC--CeeEEEEEEcCccHHHHHHH
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYS-FPLTTEDYVHRIGRTGQAG--KKGVSHPFLTNHNKALAGEL 65 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d-~P~~~~~y~~r~GR~gR~g--~~g~~i~~~~~~~~~~~~~i 65 (121)
.||+||..++-||++|=-..|+--| +-.++-.|-|+.|||||.| ..|.++.+--| ...+..+
T Consensus 990 ~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~FmgiP--~~kv~rL 1054 (1330)
T KOG0949|consen 990 QVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFMGIP--RQKVQRL 1054 (1330)
T ss_pred EEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEEEeCc--HHHHHHH
Confidence 6899999999999999555555544 3446889999999999987 35666655433 3444444
No 122
>PF13871 Helicase_C_4: Helicase_C-like
Probab=95.88 E-value=0.034 Score=42.37 Aligned_cols=72 Identities=18% Similarity=0.344 Sum_probs=51.7
Q ss_pred cEEEEeccccccCCCCCc--------cEEEEeCCCCChhhhhhhheeceeCCCe-eEEEEEE-c--CccHHHHHHHHHHH
Q 038184 2 YLQVATDIAARGLDIPDV--------EVVINYSFPLTTEDYVHRIGRTGQAGKK-GVSHPFL-T--NHNKALAGELVNVL 69 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v--------~~Vi~~d~P~~~~~y~~r~GR~gR~g~~-g~~i~~~-~--~~~~~~~~~i~~~~ 69 (121)
.|+|.|++++-||-++.- ..-|...+||+.+..+|..||+-|.++. .-.+.++ + +.|......+...+
T Consensus 63 ~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE~Rfas~va~rL 142 (278)
T PF13871_consen 63 DVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGERRFASTVARRL 142 (278)
T ss_pred eEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHHHHHHHHHHHHH
Confidence 689999999999987632 2355679999999999999999998863 3333333 3 34556666666666
Q ss_pred HHhc
Q 038184 70 REAR 73 (121)
Q Consensus 70 ~~~~ 73 (121)
...+
T Consensus 143 ~sLg 146 (278)
T PF13871_consen 143 ESLG 146 (278)
T ss_pred hhcc
Confidence 6543
No 123
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=95.85 E-value=0.018 Score=50.05 Aligned_cols=58 Identities=31% Similarity=0.360 Sum_probs=48.5
Q ss_pred cEEEEeccccccCCCC--------------------------------Ccc-----EEEEeCCCCChhhhhhhheeceeC
Q 038184 2 YLQVATDIAARGLDIP--------------------------------DVE-----VVINYSFPLTTEDYVHRIGRTGQA 44 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~--------------------------------~v~-----~Vi~~d~P~~~~~y~~r~GR~gR~ 44 (121)
.|-|||++++||-||. .|. |||-...|.|..-=-|=.||+||-
T Consensus 499 aVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQ 578 (913)
T PRK13103 499 ALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQ 578 (913)
T ss_pred cEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccC
Confidence 3789999999999984 121 688888999877777889999999
Q ss_pred CCeeEEEEEEcCccH
Q 038184 45 GKKGVSHPFLTNHNK 59 (121)
Q Consensus 45 g~~g~~i~~~~~~~~ 59 (121)
|..|.+-.|++-+|.
T Consensus 579 GDPGsS~f~lSlED~ 593 (913)
T PRK13103 579 GDPGSSRFYLSLEDS 593 (913)
T ss_pred CCCCceEEEEEcCcH
Confidence 999999999986554
No 124
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=95.47 E-value=0.02 Score=51.29 Aligned_cols=55 Identities=25% Similarity=0.397 Sum_probs=42.0
Q ss_pred CcEEEEeccccccCCCCCccEEEE----eCC------CCChhhhhhhheeceeCCC--eeEEEEEEc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVIN----YSF------PLTTEDYVHRIGRTGQAGK--KGVSHPFLT 55 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~----~d~------P~~~~~y~~r~GR~gR~g~--~g~~i~~~~ 55 (121)
++|||+|-.++.|+++|.-..+|- ||. +.++.+-+||.|||||.+. .|..++...
T Consensus 634 iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~ 700 (1674)
T KOG0951|consen 634 IQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITD 700 (1674)
T ss_pred eeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccC
Confidence 579999999999999998887764 554 3358888999999999763 444444433
No 125
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.46 E-value=0.03 Score=47.48 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=43.4
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEE
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSH 51 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i 51 (121)
+|++|-+.+.|+++...++||+||..|++....|...|+-|.|+...+-
T Consensus 766 ~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~ 814 (866)
T COG0553 766 FLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVK 814 (866)
T ss_pred EEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeE
Confidence 5688889999999999999999999999999999999998988765443
No 126
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=95.36 E-value=0.025 Score=47.78 Aligned_cols=54 Identities=22% Similarity=0.339 Sum_probs=42.2
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeC-C---CeeEEEEEEc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQA-G---KKGVSHPFLT 55 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~-g---~~g~~i~~~~ 55 (121)
++|||+++.+..|.|.|.++.++..- |...-.++|.+||+.|. . ..|..+-|+.
T Consensus 592 ~~ilIVvdmllTGFDaP~l~tLyldK-plk~h~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 592 PKLLIVVDMLLTGFDAPILNTLYLDK-PLKYHGLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred ceEEEEEcccccccCCCccceEEEec-cccccHHHHHHHHhccccCCCCCCEEEEECcC
Confidence 47999999999999999999888754 55555799999999993 2 2356665654
No 127
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.99 E-value=0.023 Score=46.70 Aligned_cols=54 Identities=28% Similarity=0.436 Sum_probs=45.0
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCC------------------ChhhhhhhheeceeCCCeeEEEEEEcC
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPL------------------TTEDYVHRIGRTGQAGKKGVSHPFLTN 56 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~------------------~~~~y~~r~GR~gR~g~~g~~i~~~~~ 56 (121)
+|+|+|++++--+-+++|.+||.-.+-. +-.+=.||.||+||. +.|.+..+|+.
T Consensus 315 kvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte 386 (699)
T KOG0925|consen 315 KVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTE 386 (699)
T ss_pred eEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecH
Confidence 5899999999999999999999766543 344557899999887 78999999984
No 128
>COG4889 Predicted helicase [General function prediction only]
Probab=94.94 E-value=0.028 Score=49.15 Aligned_cols=54 Identities=20% Similarity=0.290 Sum_probs=43.2
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCC---CeeEEEEEEc
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAG---KKGVSHPFLT 55 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g---~~g~~i~~~~ 55 (121)
+||----.+++|+|+|.++.||-||.-.+..+-+|.+||+=|-. ..|..|+-+.
T Consensus 530 kIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIa 586 (1518)
T COG4889 530 KILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIA 586 (1518)
T ss_pred eeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEec
Confidence 45544556899999999999999999999999999999987732 4567766654
No 129
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=94.74 E-value=0.021 Score=49.38 Aligned_cols=55 Identities=16% Similarity=0.188 Sum_probs=38.6
Q ss_pred cEEEEeccccccCCCCCcc--EEEEeCCCCC------------------------------hhhhhhhheeceeCCCeeE
Q 038184 2 YLQVATDIAARGLDIPDVE--VVINYSFPLT------------------------------TEDYVHRIGRTGQAGKKGV 49 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~--~Vi~~d~P~~------------------------------~~~y~~r~GR~gR~g~~g~ 49 (121)
.||++|+.+.+|+|+++.. +||...+|.. ...+.|-+||.-|.....-
T Consensus 727 ~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G 806 (850)
T TIGR01407 727 AILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRG 806 (850)
T ss_pred eEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceE
Confidence 4899999999999999777 5666777643 1233677899888765433
Q ss_pred EEEEEcC
Q 038184 50 SHPFLTN 56 (121)
Q Consensus 50 ~i~~~~~ 56 (121)
++.+++.
T Consensus 807 ~v~ilD~ 813 (850)
T TIGR01407 807 SIVILDR 813 (850)
T ss_pred EEEEEcc
Confidence 4555554
No 130
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=94.72 E-value=0.083 Score=36.81 Aligned_cols=54 Identities=20% Similarity=0.304 Sum_probs=32.1
Q ss_pred EEEEec--cccccCCCCC--ccEEEEeCCCCC-hh-----------------------------hhhhhheeceeCCCee
Q 038184 3 LQVATD--IAARGLDIPD--VEVVINYSFPLT-TE-----------------------------DYVHRIGRTGQAGKKG 48 (121)
Q Consensus 3 iLV~Td--~~~~GlDi~~--v~~Vi~~d~P~~-~~-----------------------------~y~~r~GR~gR~g~~g 48 (121)
||+++. .+.+|+|+++ +..||...+|.- +. ...|-+||+-|..+.-
T Consensus 62 il~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~ 141 (167)
T PF13307_consen 62 ILLAVAGGSFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDY 141 (167)
T ss_dssp EEEEETTSCCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-E
T ss_pred EEEEEecccEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCc
Confidence 788888 8999999985 778999999852 11 1146689998887654
Q ss_pred EEEEEEcC
Q 038184 49 VSHPFLTN 56 (121)
Q Consensus 49 ~~i~~~~~ 56 (121)
-++.++++
T Consensus 142 g~i~llD~ 149 (167)
T PF13307_consen 142 GVIILLDS 149 (167)
T ss_dssp EEEEEESG
T ss_pred EEEEEEcC
Confidence 45555553
No 131
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=94.61 E-value=0.045 Score=48.85 Aligned_cols=54 Identities=15% Similarity=0.282 Sum_probs=47.2
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeE--EEEEEcC
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGV--SHPFLTN 56 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~--~i~~~~~ 56 (121)
+|+||=+.+-||++...+.||.||--|+|..=+|...||-|-|++.. ++-|++.
T Consensus 755 FLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk 810 (1373)
T KOG0384|consen 755 FLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTK 810 (1373)
T ss_pred EEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecC
Confidence 68999999999999999999999999999999999999999887544 4555654
No 132
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=94.51 E-value=0.023 Score=44.38 Aligned_cols=17 Identities=29% Similarity=0.657 Sum_probs=15.4
Q ss_pred eCCCCChhhhhhhheece
Q 038184 25 YSFPLTTEDYVHRIGRTG 42 (121)
Q Consensus 25 ~d~P~~~~~y~~r~GR~g 42 (121)
++ |.++++|+||+||+|
T Consensus 341 ~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred EC-CCCHHHHhhhcccCC
Confidence 55 999999999999986
No 133
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=94.50 E-value=0.028 Score=49.68 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=34.3
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCC
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGK 46 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~ 46 (121)
-|+|+|.+.+-|+|+ +.+.+|. -|..+.+.+||.||+.|.+.
T Consensus 840 ~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 840 FIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred eEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhccccccc
Confidence 488999999999995 3555544 56789999999999999875
No 134
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=94.23 E-value=0.13 Score=44.36 Aligned_cols=51 Identities=16% Similarity=0.288 Sum_probs=45.2
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEE
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPF 53 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~ 53 (121)
+|++|=+.+-||++...+.||.||--|+|..=+|..-||-|-|+...+++|
T Consensus 543 FlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~ 593 (971)
T KOG0385|consen 543 FLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVY 593 (971)
T ss_pred EEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEE
Confidence 589999999999999999999999999999999999999898876655444
No 135
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=94.17 E-value=0.17 Score=34.59 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=23.0
Q ss_pred EEEEeccccccCCCCC--ccEEEEeCCCC
Q 038184 3 LQVATDIAARGLDIPD--VEVVINYSFPL 29 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~--v~~Vi~~d~P~ 29 (121)
||++|.-+++|+|+++ +..||...+|.
T Consensus 51 iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 51 ILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred EEEEccceecceecCCCCeeEEEEEecCC
Confidence 8899988999999986 56788888885
No 136
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=93.94 E-value=0.2 Score=34.27 Aligned_cols=27 Identities=33% Similarity=0.551 Sum_probs=22.2
Q ss_pred EEEEecc--ccccCCCCC--ccEEEEeCCCC
Q 038184 3 LQVATDI--AARGLDIPD--VEVVINYSFPL 29 (121)
Q Consensus 3 iLV~Td~--~~~GlDi~~--v~~Vi~~d~P~ 29 (121)
||+++.- +++|+|+++ +..||...+|.
T Consensus 50 iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 50 LLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred EEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 6777766 999999986 67899988885
No 137
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=93.48 E-value=0.015 Score=53.13 Aligned_cols=43 Identities=28% Similarity=0.586 Sum_probs=40.3
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheecee
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQ 43 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR 43 (121)
+|+|++|.++..|+|++.|+.|+.++.|.....|+|+.||+-+
T Consensus 355 ln~L~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~~~ 397 (1606)
T KOG0701|consen 355 LNLLIATSVLEEGVDVPKCNLVVLFDAPTYYRSYVQKKGRARA 397 (1606)
T ss_pred hhHHHHHHHHHhhcchhhhhhheeccCcchHHHHHHhhccccc
Confidence 4789999999999999999999999999999999999999844
No 138
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=93.22 E-value=0.06 Score=47.44 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=46.2
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEE
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPF 53 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~ 53 (121)
.||.|-+.+-||++-..+-||.||..|+|.-=+|.+=|+-|.|+..-++.+
T Consensus 1221 ~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1221 FLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred EEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 589999999999999999999999999999889999999999987665544
No 139
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=92.94 E-value=0.3 Score=42.35 Aligned_cols=50 Identities=14% Similarity=0.018 Sum_probs=37.0
Q ss_pred EEeccccccCCCCC----------------------c----------cEEEEeCCCCChhhhhh--hheeceeCCCeeEE
Q 038184 5 VATDIAARGLDIPD----------------------V----------EVVINYSFPLTTEDYVH--RIGRTGQAGKKGVS 50 (121)
Q Consensus 5 V~Td~~~~GlDi~~----------------------v----------~~Vi~~d~P~~~~~y~~--r~GR~gR~g~~g~~ 50 (121)
|+|++.+.|+|++. + ++||.|++=.+...-++ |.||+||. +.+
T Consensus 431 ~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~VImYEP~~sfIR~IEvyra~r~~r~---~rV 507 (814)
T TIGR00596 431 FEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRYVIMYEPDISFIRQLEVYKASRPLRP---LRV 507 (814)
T ss_pred ccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCEEEEECCChHHHHHHHHHHccCCCCC---cEE
Confidence 67888899999997 5 89999997666666666 66666555 566
Q ss_pred EEEEcCc
Q 038184 51 HPFLTNH 57 (121)
Q Consensus 51 i~~~~~~ 57 (121)
+.++...
T Consensus 508 yfL~y~~ 514 (814)
T TIGR00596 508 YFLYYGG 514 (814)
T ss_pred EEEEECC
Confidence 6666543
No 140
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=92.35 E-value=0.34 Score=40.49 Aligned_cols=53 Identities=17% Similarity=0.265 Sum_probs=38.0
Q ss_pred EEEEeccccccCCCCC--ccEEEEeCCCCC------------------------------hhhhhhhheeceeCCCeeEE
Q 038184 3 LQVATDIAARGLDIPD--VEVVINYSFPLT------------------------------TEDYVHRIGRTGQAGKKGVS 50 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~--v~~Vi~~d~P~~------------------------------~~~y~~r~GR~gR~g~~g~~ 50 (121)
+||+|..+.+|+|+++ +..||...+|.- +....|-+||.=|.-...-+
T Consensus 531 ~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ 610 (654)
T COG1199 531 ILVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGV 610 (654)
T ss_pred EEEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceE
Confidence 7999999999999984 567888888765 33447888999885443333
Q ss_pred EEEEc
Q 038184 51 HPFLT 55 (121)
Q Consensus 51 i~~~~ 55 (121)
+.+++
T Consensus 611 ivllD 615 (654)
T COG1199 611 IVLLD 615 (654)
T ss_pred EEEec
Confidence 33443
No 141
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=91.91 E-value=0.11 Score=44.85 Aligned_cols=42 Identities=17% Similarity=0.375 Sum_probs=38.8
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheecee
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQ 43 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR 43 (121)
+|-|+.+++.-|+|+|.|-+++-+-.-.|...|-|++||.=|
T Consensus 483 ~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTR 524 (875)
T COG4096 483 RIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTR 524 (875)
T ss_pred ceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccc
Confidence 578999999999999999999999999999999999999766
No 142
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=91.67 E-value=0.19 Score=43.37 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=42.2
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCC--eeEEEEEEcCcc
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGK--KGVSHPFLTNHN 58 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~--~g~~i~~~~~~~ 58 (121)
+|++|-+.+-||++...++||.||+-.+|-+=.|.--|+-|.|+ .-.++-+++..-
T Consensus 832 FLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 832 FLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred EEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCc
Confidence 58999999999999999999999998886555555555555554 345666676543
No 143
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=91.47 E-value=0.55 Score=40.01 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=24.0
Q ss_pred EEEEeccccccCCCCC--ccEEEEeCCCC
Q 038184 3 LQVATDIAARGLDIPD--VEVVINYSFPL 29 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~--v~~Vi~~d~P~ 29 (121)
||++|+.+.+|+|+|+ +.+||..-+|.
T Consensus 588 VL~g~~sf~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 588 VLFGLQSFAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred EEEEeccccccccCCCCceEEEEEEcCCC
Confidence 8999999999999985 78899888875
No 144
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=90.83 E-value=0.55 Score=34.90 Aligned_cols=71 Identities=11% Similarity=0.135 Sum_probs=54.9
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheece-eCCCeeEEEEEEcCccHHHHHHHHHHHHHh
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTG-QAGKKGVSHPFLTNHNKALAGELVNVLREA 72 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~g-R~g~~g~~i~~~~~~~~~~~~~i~~~~~~~ 72 (121)
.|+|.=+.++||+-++++...+..--|.+.++++||.-.-| |.|-...+=+++++.-...+..+.......
T Consensus 137 ~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~dl~Ri~~~~~l~~~f~~i~~~~e~l 208 (239)
T PF10593_consen 137 VIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYEDLCRIYMPEELYDWFRHIAEAEEEL 208 (239)
T ss_pred EEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCcccccceEEecCHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999888888999999999976566 666677777777765556666655444433
No 145
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=90.57 E-value=0.83 Score=39.93 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=19.8
Q ss_pred hhheeceeCCCeeEEEEEEcCccH
Q 038184 36 HRIGRTGQAGKKGVSHPFLTNHNK 59 (121)
Q Consensus 36 ~r~GR~gR~g~~g~~i~~~~~~~~ 59 (121)
|=.||+||-|-.|.+-.|++-+|.
T Consensus 610 QLrGRaGRQGDPG~s~f~lSLED~ 633 (870)
T CHL00122 610 QLRGRAGRQGDPGSSRFFLSLEDN 633 (870)
T ss_pred HHhccccCCCCCCcceEEEEeccH
Confidence 455999999999999999886554
No 146
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=90.06 E-value=0.68 Score=42.07 Aligned_cols=50 Identities=20% Similarity=0.375 Sum_probs=39.3
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCCh------hhhhhhheeceeCCCeeEEEEEEcC
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTT------EDYVHRIGRTGQAGKKGVSHPFLTN 56 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~------~~y~~r~GR~gR~g~~g~~i~~~~~ 56 (121)
.|++|-..+-||++...+.||.||--|++ .+..||||+| |. -..+-|++.
T Consensus 1331 fILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqt-RD---VHIYRLISe 1386 (1958)
T KOG0391|consen 1331 FILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT-RD---VHIYRLISE 1386 (1958)
T ss_pred EEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCc-cc---eEEEEeecc
Confidence 46788889999999999999999999984 4778899888 43 244555553
No 147
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=89.65 E-value=0.39 Score=41.48 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=41.7
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeE
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGV 49 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~ 49 (121)
+|++|-+.+-||++...+.||.||.-|++.-=.|..-||-|-|+...
T Consensus 1098 FLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrd 1144 (1185)
T KOG0388|consen 1098 FLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRD 1144 (1185)
T ss_pred EEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccc
Confidence 57899999999999999999999999999888888888888876543
No 148
>PRK14873 primosome assembly protein PriA; Provisional
Probab=88.61 E-value=1.3 Score=37.69 Aligned_cols=52 Identities=12% Similarity=-0.034 Sum_probs=36.5
Q ss_pred cEEEEec----cccccCCCCCccEEEEeCC------CC------ChhhhhhhheeceeCCCeeEEEEEEcCcc
Q 038184 2 YLQVATD----IAARGLDIPDVEVVINYSF------PL------TTEDYVHRIGRTGQAGKKGVSHPFLTNHN 58 (121)
Q Consensus 2 ~iLV~Td----~~~~GlDi~~v~~Vi~~d~------P~------~~~~y~~r~GR~gR~g~~g~~i~~~~~~~ 58 (121)
.|||.|. +++ +++.+|+..|. |. ....+.|-.||+||....|.++....++.
T Consensus 473 ~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~~p~~ 540 (665)
T PRK14873 473 ALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVAESSL 540 (665)
T ss_pred CEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCCC
Confidence 5999998 555 36677665553 21 14455788999999988999988765443
No 149
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=88.22 E-value=0.64 Score=38.54 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=47.2
Q ss_pred EEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEE--EEEc--CccHHHHHHHHHHHH
Q 038184 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSH--PFLT--NHNKALAGELVNVLR 70 (121)
Q Consensus 5 V~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i--~~~~--~~~~~~~~~i~~~~~ 70 (121)
+.-.+++.||++...+.|+-..+||++.-++|.--|+-|.|+...+- .|+. ..|...+..+.+.+.
T Consensus 549 lsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~ 618 (689)
T KOG1000|consen 549 LSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLD 618 (689)
T ss_pred EEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHH
Confidence 44557789999999999999999999999988777777776544332 2222 345666666655544
No 150
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=88.12 E-value=0.73 Score=41.75 Aligned_cols=48 Identities=19% Similarity=0.328 Sum_probs=43.4
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEE
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVS 50 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~ 50 (121)
+|.+|.|.+-|+++.+.+.||.++--|+|-.=+|.+-||-|-|++..+
T Consensus 1398 LlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvV 1445 (1549)
T KOG0392|consen 1398 LLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVV 1445 (1549)
T ss_pred EEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceee
Confidence 468999999999999999999999999998889999999999876543
No 151
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=87.46 E-value=1.3 Score=39.38 Aligned_cols=52 Identities=15% Similarity=0.245 Sum_probs=45.2
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEE
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFL 54 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~ 54 (121)
+|..|-+.+.|++++-.+.||.||.-|++....|+.-||-|.|....+-++.
T Consensus 782 FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~r 833 (1157)
T KOG0386|consen 782 FLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLR 833 (1157)
T ss_pred eeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeee
Confidence 5789999999999999999999999999999999999998888665544443
No 152
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=86.79 E-value=1.8 Score=38.20 Aligned_cols=28 Identities=21% Similarity=0.444 Sum_probs=23.9
Q ss_pred cEEEEeccccccCCCCC--ccEEEEeCCCC
Q 038184 2 YLQVATDIAARGLDIPD--VEVVINYSFPL 29 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~--v~~Vi~~d~P~ 29 (121)
.||++|+.+.+|+|+|+ +.+||..-+|.
T Consensus 806 ~iLlG~~sFwEGVD~pg~~l~~viI~kLPF 835 (928)
T PRK08074 806 AILLGTSSFWEGIDIPGDELSCLVIVRLPF 835 (928)
T ss_pred eEEEecCcccCccccCCCceEEEEEecCCC
Confidence 38999999999999985 57888888775
No 153
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=86.52 E-value=1.5 Score=39.21 Aligned_cols=39 Identities=26% Similarity=0.485 Sum_probs=28.1
Q ss_pred Chhhhhhhheecee--CC--CeeEEEEEEcCccHHHHHHHHHHHH
Q 038184 30 TTEDYVHRIGRTGQ--AG--KKGVSHPFLTNHNKALAGELVNVLR 70 (121)
Q Consensus 30 ~~~~y~~r~GR~gR--~g--~~g~~i~~~~~~~~~~~~~i~~~~~ 70 (121)
++.+|+|..|||.| +| ..|.++.+++ |...++.+.+.+.
T Consensus 528 D~~TYIQaSGRtSRLyaGglTkGlSvvlvd--d~~~f~~L~krm~ 570 (1187)
T COG1110 528 DVRTYIQASGRTSRLYAGGLTKGLSVVLVD--DPEVFEGLIKRMS 570 (1187)
T ss_pred ChhhheeccchHhhhhccccccceEEEEec--CHHHHHHHHHHHH
Confidence 78899999999999 33 3566676665 4456666666665
No 154
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.57 E-value=2.9 Score=35.59 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=23.7
Q ss_pred EEEEe--ccccccCCCCC--ccEEEEeCCCC
Q 038184 3 LQVAT--DIAARGLDIPD--VEVVINYSFPL 29 (121)
Q Consensus 3 iLV~T--d~~~~GlDi~~--v~~Vi~~d~P~ 29 (121)
||+|+ .-+++|||+++ +..||...+|-
T Consensus 585 vL~av~gGk~sEGIDf~~~~~r~ViivGlPf 615 (705)
T TIGR00604 585 VLLSVAGGKVSEGIDFCDDLGRAVIMVGIPY 615 (705)
T ss_pred EEEEecCCcccCccccCCCCCcEEEEEccCC
Confidence 78888 89999999985 67899999997
No 155
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=83.98 E-value=3 Score=36.33 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=22.0
Q ss_pred cEEEEeccccccCCCC--CccEEEEeCCCC
Q 038184 2 YLQVATDIAARGLDIP--DVEVVINYSFPL 29 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~--~v~~Vi~~d~P~ 29 (121)
.||++|+.+.+|+|+| ....||..-+|.
T Consensus 696 ~vLlG~~sFwEGVD~p~~~~~~viI~kLPF 725 (820)
T PRK07246 696 QILLGLGSFWEGVDFVQADRMIEVITRLPF 725 (820)
T ss_pred eEEEecchhhCCCCCCCCCeEEEEEecCCC
Confidence 4899999999999997 355566666663
No 156
>PRK09401 reverse gyrase; Reviewed
Probab=82.82 E-value=3 Score=37.83 Aligned_cols=40 Identities=30% Similarity=0.451 Sum_probs=29.0
Q ss_pred ChhhhhhhheeceeC--C--CeeEEEEEEcCccHHHHHHHHHHHHH
Q 038184 30 TTEDYVHRIGRTGQA--G--KKGVSHPFLTNHNKALAGELVNVLRE 71 (121)
Q Consensus 30 ~~~~y~~r~GR~gR~--g--~~g~~i~~~~~~~~~~~~~i~~~~~~ 71 (121)
++.+|+|..|||.|. | ..|.++++++ |...++.+.+.++-
T Consensus 518 d~~tYiqasGRtSrl~~gg~t~glsv~l~d--d~~~~~~l~~~~~~ 561 (1176)
T PRK09401 518 DVTTYIQASGRTSRLYAGGLTKGLSVLLVD--DEKLFESLKKKLRW 561 (1176)
T ss_pred CcchheecccchhcccCCCccceeEEEEec--CHHHHHHHHHHHHH
Confidence 678999999999993 3 3677777776 45566666666653
No 157
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=78.22 E-value=6.1 Score=33.61 Aligned_cols=29 Identities=21% Similarity=0.181 Sum_probs=25.1
Q ss_pred cEEEEeccccccCCC----------CCccEEEEeCCCCC
Q 038184 2 YLQVATDIAARGLDI----------PDVEVVINYSFPLT 30 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi----------~~v~~Vi~~d~P~~ 30 (121)
.||++|+.+-.|+|+ ..+.+||..-+|..
T Consensus 524 ~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~ 562 (636)
T TIGR03117 524 PVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFG 562 (636)
T ss_pred cEEEeCCccccccccCCccCCCCCCCcccEEEEEeCCCC
Confidence 489999999999999 35889999999854
No 158
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=71.01 E-value=6.5 Score=35.73 Aligned_cols=39 Identities=26% Similarity=0.434 Sum_probs=28.4
Q ss_pred ChhhhhhhheeceeC--C--CeeEEEEEEcCccHHHHHHHHHHHH
Q 038184 30 TTEDYVHRIGRTGQA--G--KKGVSHPFLTNHNKALAGELVNVLR 70 (121)
Q Consensus 30 ~~~~y~~r~GR~gR~--g--~~g~~i~~~~~~~~~~~~~i~~~~~ 70 (121)
++.+|+|-.|||.|. | ..|.++++++ |...++.+.+.++
T Consensus 516 d~~tyiqasgrtsr~~~g~~t~gls~~~~~--~~~~~~~l~~~~~ 558 (1171)
T TIGR01054 516 DARTYIQASGRTSRLYAGGLTKGLSIVLVD--DPEAFEALKKRLK 558 (1171)
T ss_pred CccceeEccChhhhcccCCcCCceEEEEec--CHHHHHHHHHHHh
Confidence 678999999999993 3 4677777776 4556666666655
No 159
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=68.93 E-value=14 Score=30.12 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=47.5
Q ss_pred cEEEEeccc--cccCCCCCccEEEEeCCCCChhhhhhhheeceeCC------CeeEEEEEEcCccHHHHHHHHHH
Q 038184 2 YLQVATDIA--ARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAG------KKGVSHPFLTNHNKALAGELVNV 68 (121)
Q Consensus 2 ~iLV~Td~~--~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g------~~g~~i~~~~~~~~~~~~~i~~~ 68 (121)
+||+.|.=+ =+-..+.++.+||-|.+|..+.=|-.-+.-.+... ....+.++++.-|...++.|...
T Consensus 352 ~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVGt 426 (442)
T PF06862_consen 352 PILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVGT 426 (442)
T ss_pred eEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhCH
Confidence 456666533 23456788999999999999988877665443332 25688999998888877777443
No 160
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=66.27 E-value=18 Score=32.23 Aligned_cols=54 Identities=24% Similarity=0.365 Sum_probs=43.9
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCC----CeeEEEEEEc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAG----KKGVSHPFLT 55 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g----~~g~~i~~~~ 55 (121)
.+|||.+|.+.-|.|.|-++.++ .|=|.---.++|.+.|+.|.- ..|..+-|..
T Consensus 594 ~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 594 LDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred CCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 36999999999999999887554 588888889999999999943 3467776665
No 161
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=61.70 E-value=10 Score=32.98 Aligned_cols=47 Identities=13% Similarity=0.097 Sum_probs=39.6
Q ss_pred EEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEE
Q 038184 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSH 51 (121)
Q Consensus 5 V~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i 51 (121)
+.=.+.+-||++...+|+|..|+=|++.-=.|.+-|.-|+|++..++
T Consensus 804 lSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~ 850 (901)
T KOG4439|consen 804 LSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVF 850 (901)
T ss_pred EEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceE
Confidence 44455667999999999999999999998889999999999766554
No 162
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=61.32 E-value=6.6 Score=34.38 Aligned_cols=54 Identities=30% Similarity=0.381 Sum_probs=35.1
Q ss_pred EEEEeccccccCCCCCcc-----------EEEEeCCCCChhhh--hhhheeceeCCCeeEEEEEEcCcc
Q 038184 3 LQVATDIAARGLDIPDVE-----------VVINYSFPLTTEDY--VHRIGRTGQAGKKGVSHPFLTNHN 58 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~-----------~Vi~~d~P~~~~~y--~~r~GR~gR~g~~g~~i~~~~~~~ 58 (121)
|=|||++++||-||.--. +||--.- .-..+ -|=.||+||-|-.|.+-.|++-+|
T Consensus 480 VTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTER--hESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 480 VTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTER--HESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred cccccccccCCcccccCCCHHHHHHhCCcEEEeccc--chhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 348999999999985222 2443222 22222 256699999998888877776444
No 163
>PRK14701 reverse gyrase; Provisional
Probab=58.08 E-value=8 Score=36.43 Aligned_cols=39 Identities=28% Similarity=0.526 Sum_probs=27.9
Q ss_pred Chhhhhhhheecee--CC--CeeEEEEEEcCccHHHHHHHHHHHH
Q 038184 30 TTEDYVHRIGRTGQ--AG--KKGVSHPFLTNHNKALAGELVNVLR 70 (121)
Q Consensus 30 ~~~~y~~r~GR~gR--~g--~~g~~i~~~~~~~~~~~~~i~~~~~ 70 (121)
++.+|+|..|||.| +| .+|.++++++. ...++.+.+.++
T Consensus 495 d~~tyiqasgrtsrl~~gg~tkgls~~~~d~--~~~~~~l~~~~~ 537 (1638)
T PRK14701 495 DVRTYIQASGRTSRLFAGGITKGASVLIVDD--PEIFNALIRQMR 537 (1638)
T ss_pred CcccceeccchhhhccCCCcCCceEEEEecC--HHHHHHHHHHHh
Confidence 67899999999999 33 46777777764 455555555555
No 164
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=57.46 E-value=12 Score=33.11 Aligned_cols=64 Identities=9% Similarity=0.137 Sum_probs=52.8
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHH
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELV 66 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~ 66 (121)
+|+.|-...-|+++-..+-++.||.-|++.-=.|.+.|.-|-|+...++.+---.|..+-++|.
T Consensus 793 fllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIy 856 (1387)
T KOG1016|consen 793 FLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIY 856 (1387)
T ss_pred eeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHH
Confidence 5788999999999999999999999999998899999999999888777766555555555553
No 165
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=55.40 E-value=26 Score=31.26 Aligned_cols=71 Identities=17% Similarity=0.349 Sum_probs=46.4
Q ss_pred EEEeccccccCCCCCcc--------EEEEeCCCCChhhhhhhheeceeCCC-eeEEEEEE-c--CccHHHHHHHHHHHHH
Q 038184 4 QVATDIAARGLDIPDVE--------VVINYSFPLTTEDYVHRIGRTGQAGK-KGVSHPFL-T--NHNKALAGELVNVLRE 71 (121)
Q Consensus 4 LV~Td~~~~GlDi~~v~--------~Vi~~d~P~~~~~y~~r~GR~gR~g~-~g~~i~~~-~--~~~~~~~~~i~~~~~~ 71 (121)
-|-+.+++-||-++.=. .=|...+||+.+.-+|.-|||-|.++ ++--+.|+ + ..+......+.+-+..
T Consensus 861 AIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErRFAS~VAKRLES 940 (1300)
T KOG1513|consen 861 AIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERRFASIVAKRLES 940 (1300)
T ss_pred eeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchHHHHHHHHHHHh
Confidence 35677778888775433 34568999999999999999999765 23333333 3 3455555555555555
Q ss_pred hcc
Q 038184 72 ARQ 74 (121)
Q Consensus 72 ~~~ 74 (121)
.+.
T Consensus 941 LGA 943 (1300)
T KOG1513|consen 941 LGA 943 (1300)
T ss_pred hcc
Confidence 443
No 166
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.85 E-value=33 Score=29.06 Aligned_cols=68 Identities=19% Similarity=0.182 Sum_probs=45.7
Q ss_pred cEEEEeccc--cccCCCCCccEEEEeCCCCChhhh---hhhheeceeCC----CeeEEEEEEcCccHHHHHHHHHHH
Q 038184 2 YLQVATDIA--ARGLDIPDVEVVINYSFPLTTEDY---VHRIGRTGQAG----KKGVSHPFLTNHNKALAGELVNVL 69 (121)
Q Consensus 2 ~iLV~Td~~--~~GlDi~~v~~Vi~~d~P~~~~~y---~~r~GR~gR~g----~~g~~i~~~~~~~~~~~~~i~~~~ 69 (121)
+||+-|.-+ -|--++.+|..||.|.+|..|.=| +.+.+|+.-.| ..-.|.+++++-|...++.+....
T Consensus 604 ~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivGte 680 (698)
T KOG2340|consen 604 SVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVGTE 680 (698)
T ss_pred eEEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhhHH
Confidence 456666543 356788999999999999997766 44555553332 224677888888887776664443
No 167
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=49.03 E-value=16 Score=31.51 Aligned_cols=50 Identities=20% Similarity=0.329 Sum_probs=39.6
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEE
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPF 53 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~ 53 (121)
+.+.+|..+++.|++.-++|+-+..+..-..|+-|+|.+ +.|+--|+..+
T Consensus 328 v~~~~~~~gk~~~v~~kdlv~~~~~~f~~~EYI~Ragwt-pdgkyvwvq~L 377 (867)
T KOG2281|consen 328 VEFENDAEGKIYDVPLKDLVQPFHCLFEDVEYIARAGWT-PDGKYVWVQVL 377 (867)
T ss_pred EEEeeccccceeccchhhcccccccccccceeeeecccc-CCCcEEEEEEe
Confidence 457889999999999999999999888777898888877 66655554433
No 168
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=48.06 E-value=63 Score=28.89 Aligned_cols=69 Identities=13% Similarity=0.172 Sum_probs=50.3
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheecee--CCCeeEE-----------EEEEcCccHHHHHHHHHH
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQ--AGKKGVS-----------HPFLTNHNKALAGELVNV 68 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR--~g~~g~~-----------i~~~~~~~~~~~~~i~~~ 68 (121)
+.|.+--++-+|-|=|+|=.+.-.....+-.+=.|.+||.-| ....|.- ..++...+...++.|++.
T Consensus 485 RFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~LqkE 564 (985)
T COG3587 485 RFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQKE 564 (985)
T ss_pred eeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHHHH
Confidence 567777888999999999988889888888999999999877 2233322 234455666666666554
Q ss_pred HH
Q 038184 69 LR 70 (121)
Q Consensus 69 ~~ 70 (121)
..
T Consensus 565 I~ 566 (985)
T COG3587 565 IN 566 (985)
T ss_pred HH
Confidence 43
No 169
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=46.85 E-value=26 Score=30.84 Aligned_cols=53 Identities=13% Similarity=0.210 Sum_probs=36.7
Q ss_pred cEEEEeccccccCCCCCc--cEEEEeCCC----CChhhhhhhheeceeCCCeeEEEEEEc
Q 038184 2 YLQVATDIAARGLDIPDV--EVVINYSFP----LTTEDYVHRIGRTGQAGKKGVSHPFLT 55 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v--~~Vi~~d~P----~~~~~y~~r~GR~gR~g~~g~~i~~~~ 55 (121)
+|++=|.+..-|+++... +-++-|==| .+..+.+|++||. |.=.....+.+++
T Consensus 328 ~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRv-R~l~~~ei~v~~d 386 (824)
T PF02399_consen 328 DVVIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRV-RSLLDNEIYVYID 386 (824)
T ss_pred eEEEEeceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHH-HhhccCeEEEEEe
Confidence 689999999999999754 446556223 2455689999999 5444455555554
No 170
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=46.38 E-value=41 Score=28.50 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=39.6
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCC-CChhhhhhhheeceeCCC------eeEEEEEEcCc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFP-LTTEDYVHRIGRTGQAGK------KGVSHPFLTNH 57 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P-~~~~~y~~r~GR~gR~g~------~g~~i~~~~~~ 57 (121)
+|-+..+-|.--.+|+|..+++|+...- .+..+-.||.||.-|+.+ +...+++++..
T Consensus 590 vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~D 653 (776)
T KOG1123|consen 590 VNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKD 653 (776)
T ss_pred cceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecc
Confidence 3556677788889999999999986432 346677899998877543 23455666543
No 171
>PLN02390 molybdopterin synthase catalytic subunit
Probab=45.94 E-value=45 Score=21.89 Aligned_cols=46 Identities=20% Similarity=0.214 Sum_probs=29.6
Q ss_pred hhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHH
Q 038184 34 YVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDAL 80 (121)
Q Consensus 34 y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 80 (121)
-+||+|+. ..|.....+...++.=...+......+...+..+|=|-
T Consensus 57 i~HR~G~l-~vge~~v~v~v~s~HR~~Af~A~~~~id~lK~~vPIWK 102 (111)
T PLN02390 57 VAHRLGPV-PVGETSVFVAVSSVHRADALDACKFLIDELKASVPIWK 102 (111)
T ss_pred EEEeeecc-cCCCEEEEEEEECCCHHHHHHHHHHHHHHHhhcCCEEE
Confidence 36888877 67666666666666555566666666666666666443
No 172
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=45.29 E-value=12 Score=34.45 Aligned_cols=46 Identities=24% Similarity=0.319 Sum_probs=41.2
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCee
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKG 48 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g 48 (121)
+|+-+...+-|+++-+..||+..++=.++..=.|.+||.-|.|+.-
T Consensus 1270 lll~~~~~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~ 1315 (1394)
T KOG0298|consen 1270 LLLFVSKGSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQKR 1315 (1394)
T ss_pred EEEEeccCcccccHHhhhhhheeccccCchHHHhhhhhhhhccccc
Confidence 4577788889999999999999999999999999999999998654
No 173
>PHA03371 circ protein; Provisional
Probab=44.16 E-value=28 Score=25.94 Aligned_cols=46 Identities=28% Similarity=0.323 Sum_probs=28.8
Q ss_pred cccccCCCCCccEE-EEeCCCCC-------------hhhhhhhheeceeCCCeeEEEEEE
Q 038184 9 IAARGLDIPDVEVV-INYSFPLT-------------TEDYVHRIGRTGQAGKKGVSHPFL 54 (121)
Q Consensus 9 ~~~~GlDi~~v~~V-i~~d~P~~-------------~~~y~~r~GR~gR~g~~g~~i~~~ 54 (121)
.++|-+|+|+=+-+ |-.|.+.+ -..|+|.||||--.|.....++|.
T Consensus 29 LaGR~vDLPgGde~~If~~~g~T~~~~g~f~~~g~~r~~~v~fIGRAya~g~~RkF~iyl 88 (240)
T PHA03371 29 LAGRTVDLPGGDELRIFADCGTTTVNFGKFVRPGSSRLAYVKFIGRAYAIGSGRKFVIYL 88 (240)
T ss_pred hcCcceecCCCCeEEEeccCCCCccceeeEecCCCCcceeeeeeehhhccCCCceEEEEE
Confidence 46788999877765 54454444 446799999985444433344333
No 174
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=43.43 E-value=30 Score=31.13 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=52.3
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeC-----C----CeeEEEEEE-cCccHHHHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQA-----G----KKGVSHPFL-TNHNKALAGELVNVLR 70 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~-----g----~~g~~i~~~-~~~~~~~~~~i~~~~~ 70 (121)
++.|++-+++.+|-|-|+|-.+....-..+...-.|.+||.-|. | ...+.++++ +......++.|+....
T Consensus 502 ~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI~ 581 (986)
T PRK15483 502 RRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEIN 581 (986)
T ss_pred eEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHHH
Confidence 36788999999999999999888888888888889999998763 2 112334444 4556667777766665
Q ss_pred H
Q 038184 71 E 71 (121)
Q Consensus 71 ~ 71 (121)
.
T Consensus 582 ~ 582 (986)
T PRK15483 582 S 582 (986)
T ss_pred h
Confidence 4
No 175
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=38.91 E-value=63 Score=28.97 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=19.5
Q ss_pred hhheeceeCCCeeEEEEEEcCccH
Q 038184 36 HRIGRTGQAGKKGVSHPFLTNHNK 59 (121)
Q Consensus 36 ~r~GR~gR~g~~g~~i~~~~~~~~ 59 (121)
|=.||+||-|-.|.+-.|++-+|.
T Consensus 667 QLRGRaGRQGDPGsSrFflSLEDd 690 (939)
T PRK12902 667 QLRGRAGRQGDPGSTRFFLSLEDN 690 (939)
T ss_pred HhhcccccCCCCCcceEEEEechH
Confidence 445999999999999999885553
No 176
>cd00756 MoaE MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), which carries the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase in the second major step in Moco biosynthesis. MPT synthase is a heterotetramer consisting of two large (MoaE) and two small (MoaD) subunits.
Probab=34.71 E-value=72 Score=21.21 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=25.7
Q ss_pred hhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHH
Q 038184 35 VHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDA 79 (121)
Q Consensus 35 ~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 79 (121)
+||+|+. ..|..-..+....+.=...+......+...+...|-+
T Consensus 69 ~HR~G~l-~vGe~~v~i~v~a~hR~~af~A~~~~id~lK~~~PiW 112 (124)
T cd00756 69 IHRVGRL-PPGEAIVLVAVSSPHRKEAFEACEFLIDRLKHRAPIW 112 (124)
T ss_pred EEEEccc-CCCCEEEEEEEecCCHHHHHHHHHHHHHHHHhhCCEE
Confidence 6788875 5665555555555554555555555555555555543
No 177
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional
Probab=34.20 E-value=1e+02 Score=23.47 Aligned_cols=75 Identities=13% Similarity=0.091 Sum_probs=43.7
Q ss_pred EEEEeccccccCCC--------CCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcc
Q 038184 3 LQVATDIAARGLDI--------PDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQ 74 (121)
Q Consensus 3 iLV~Td~~~~GlDi--------~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~ 74 (121)
||||.|+...-+-. -+|.+++.+ +-+.+-+-+|+. -+.-.+++=+.++|...+..|.+.......
T Consensus 152 VIIA~DVsP~t~kk~LP~LC~k~~VPY~iv~----sK~eLG~AIGkk---traVVAItdV~~EDk~~l~~lv~~~~~~~n 224 (266)
T PTZ00365 152 VVIAHDVDPIELVCFLPALCRKKEVPYCIIK----GKSRLGKLVHQK---TAAVVAIDNVRKEDQAEFDNLCKNFRAMFN 224 (266)
T ss_pred EEEeCCCCHHHHHHHHHHHHhccCCCEEEEC----CHHHHHHHhCCC---CceEEEecccCHHHHHHHHHHHHHHHHhcc
Confidence 56777775543322 245554444 344444444432 233456666678888889999888888777
Q ss_pred cChHHHHhhh
Q 038184 75 VVPDALLKFG 84 (121)
Q Consensus 75 ~~~~~l~~~~ 84 (121)
...+..+.++
T Consensus 225 d~~e~rr~wG 234 (266)
T PTZ00365 225 DNSELRRRWG 234 (266)
T ss_pred ccHhhhhhcC
Confidence 6444444343
No 178
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=33.71 E-value=42 Score=27.00 Aligned_cols=61 Identities=8% Similarity=-0.034 Sum_probs=45.6
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHH
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAG 63 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~ 63 (121)
++..|+.-..++.+-..+..+.++-...++....+++.|- .....+..+.++++.+..+-.
T Consensus 124 ~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvlDEaDEmLs~ 184 (397)
T KOG0327|consen 124 SVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVLDEADEMLSR 184 (397)
T ss_pred eeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc-cccccceeEEeecchHhhhcc
Confidence 4556777777777777777787888888999999999875 777778888888765554433
No 179
>PRK10678 moaE molybdopterin guanine dinucleotide biosynthesis protein MoaE; Provisional
Probab=33.61 E-value=84 Score=21.77 Aligned_cols=46 Identities=15% Similarity=0.096 Sum_probs=26.6
Q ss_pred hhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHHH
Q 038184 35 VHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDALL 81 (121)
Q Consensus 35 ~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 81 (121)
+||+|+. ..|.....+....+.=...+......+...+..+|=+-+
T Consensus 82 ~HR~G~l-~~Ge~~v~Vav~s~HR~~Af~A~~~~id~lK~~vPIWKk 127 (150)
T PRK10678 82 IHRVGEL-WPGDEIVFVGVTSAHRSSAFEAGQFIMDYLKTRAPFWKR 127 (150)
T ss_pred EEeEecc-cCCCEEEEEEEECCCHHHHHHHHHHHHHHHhhcCCeEEe
Confidence 6788876 566655555555554444455555555555666665543
No 180
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=31.43 E-value=28 Score=32.88 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=37.8
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheec
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 41 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~ 41 (121)
..+++|..+..|+|+.-++.|+.++.-.+...+.|..||+
T Consensus 723 ~~~~~pss~~~g~~~~~~~~v~~~~~~~~i~~~~q~~~~~ 762 (1606)
T KOG0701|consen 723 LPLLAPSSLFPGLDYETFNEVYRFKYALTITSLNQSLLDV 762 (1606)
T ss_pred eeeccchhcCCCcchheeeeeeeccccchhhhcccccccc
Confidence 5678999999999999999999999999999999999987
No 181
>KOG2837 consensus Protein containing a U1-type Zn-finger and implicated in RNA splicing or processing [RNA processing and modification]
Probab=30.89 E-value=70 Score=24.64 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=28.4
Q ss_pred eCCCCChhhhhhhheecee----CCCeeEEEEEEcCccHHHHHH
Q 038184 25 YSFPLTTEDYVHRIGRTGQ----AGKKGVSHPFLTNHNKALAGE 64 (121)
Q Consensus 25 ~d~P~~~~~y~~r~GR~gR----~g~~g~~i~~~~~~~~~~~~~ 64 (121)
--.-.++..|++-+||+|. .+..||.|.+++.....+.+.
T Consensus 109 aT~w~SLtefvk~LGR~Gkc~vdetekgw~i~yIdk~petl~r~ 152 (309)
T KOG2837|consen 109 ATRWRSLTEFVKYLGRTGKCKVDETEKGWFITYIDKFPETLKRI 152 (309)
T ss_pred chhhhhHHHHHHHhccCceeeeecCCCceEEEEeccChhhhcch
Confidence 3344578999999999985 234789999998655444433
No 182
>PF10357 Kin17_mid: Domain of Kin17 curved DNA-binding protein; InterPro: IPR019447 This entry represents the conserved central 169 residue region of the Kin17 DNA/RNA-binding proteins. The N-terminal region of Kin17 contains a zinc-finger domain, while in the human and mouse proteins there is a RecA-like domain found in the C-terminal region. In humans, Kin17 protein forms intra-nuclear foci during cell proliferation and is re-distributed in the nucleoplasm during the cell cycle []. ; PDB: 2V1N_A.
Probab=29.68 E-value=55 Score=22.14 Aligned_cols=44 Identities=20% Similarity=0.357 Sum_probs=25.0
Q ss_pred CccEEEEeCCCC-ChhhhhhhheeceeCC----CeeEEEEEEcCccHHH
Q 038184 18 DVEVVINYSFPL-TTEDYVHRIGRTGQAG----KKGVSHPFLTNHNKAL 61 (121)
Q Consensus 18 ~v~~Vi~~d~P~-~~~~y~~r~GR~gR~g----~~g~~i~~~~~~~~~~ 61 (121)
+-+||-.-..=| +...|++-.||+|-.. ..|+.|.+++..+...
T Consensus 50 Dk~HvHMNaT~W~sLT~FvkyLgr~G~~~Vdetekg~~I~yID~~pe~l 98 (127)
T PF10357_consen 50 DKDHVHMNATRWTSLTEFVKYLGREGKCKVDETEKGWFISYIDRSPETL 98 (127)
T ss_dssp SS----GGGSS-SSHHHHHHHHTTTTSEEEEEETTEEEEEE--SSHHHH
T ss_pred CccceeecccccchHHHHHHHHhhCCeeEeecCCCceEEEeeCCCHHHH
Confidence 344444332223 6889999999988532 5799999998654443
No 183
>COG0314 MoaE Molybdopterin converting factor, large subunit [Coenzyme metabolism]
Probab=29.61 E-value=87 Score=21.70 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=30.6
Q ss_pred hhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHH
Q 038184 34 YVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDAL 80 (121)
Q Consensus 34 y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 80 (121)
.+||+|+. ..|..-..+...++.=...++.....+...+...|=|-
T Consensus 81 i~HriG~l-~~Ge~~v~v~v~s~HR~~Af~a~~~~id~lK~~aPiWK 126 (149)
T COG0314 81 IIHRIGEL-KIGEAIVLVGVASAHRKEAFEACEYIIDRLKHRAPIWK 126 (149)
T ss_pred EEEeeccc-cCCCcEEEEEEecccHHHHHHHHHHHHHHHHhhCCceE
Confidence 46888877 67766666666666656666666666666666666554
No 184
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=29.09 E-value=35 Score=31.04 Aligned_cols=29 Identities=28% Similarity=0.526 Sum_probs=22.7
Q ss_pred cEEEE----eccccccCCCC-CccEEEEeCCCCC
Q 038184 2 YLQVA----TDIAARGLDIP-DVEVVINYSFPLT 30 (121)
Q Consensus 2 ~iLV~----Td~~~~GlDi~-~v~~Vi~~d~P~~ 30 (121)
.+||. +.++-||||+| .+.++|-|+.|+-
T Consensus 385 dvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~ 418 (1187)
T COG1110 385 DVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKF 418 (1187)
T ss_pred eEEEEecccccceeecCCchhheeEEEEecCCce
Confidence 45544 36789999998 6779999999953
No 185
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=26.62 E-value=25 Score=25.67 Aligned_cols=22 Identities=23% Similarity=0.619 Sum_probs=18.6
Q ss_pred EEEeCCCCChhhhhhhheecee
Q 038184 22 VINYSFPLTTEDYVHRIGRTGQ 43 (121)
Q Consensus 22 Vi~~d~P~~~~~y~~r~GR~gR 43 (121)
..||.+|.....|+-.+-|+|+
T Consensus 97 M~Nf~iPa~LK~yiD~i~~aGk 118 (202)
T COG1182 97 MYNFNIPAQLKAYIDHIAVAGK 118 (202)
T ss_pred ccccCCCHHHHHHHHHHhcCCc
Confidence 3689999999999998888765
No 186
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=25.43 E-value=70 Score=26.45 Aligned_cols=59 Identities=17% Similarity=0.129 Sum_probs=38.3
Q ss_pred hhhhhheeceeCCCeeEEEEEEcC-ccHHHHHHHHHHHHHhcccChHHHHhhhhhhhhhh
Q 038184 33 DYVHRIGRTGQAGKKGVSHPFLTN-HNKALAGELVNVLREARQVVPDALLKFGTHVKKKE 91 (121)
Q Consensus 33 ~y~~r~GR~gR~g~~g~~i~~~~~-~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~ 91 (121)
.-+-|.|||||.|.+=..++--+- .-..+++-+++...+...++-.....+.-.+.++.
T Consensus 551 HRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mAeryk~~q~kR~ 610 (629)
T KOG0336|consen 551 HRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDELVRMAERYKLKQSKRD 610 (629)
T ss_pred HHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHhhhcccc
Confidence 345688999999988888877753 33455566666666666666655555555444443
No 187
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=23.37 E-value=44 Score=29.92 Aligned_cols=16 Identities=44% Similarity=0.652 Sum_probs=13.9
Q ss_pred cEEEEeccccccCCCC
Q 038184 2 YLQVATDIAARGLDIP 17 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~ 17 (121)
.|-|||++++||-||.
T Consensus 491 aVTIATNMAGRGTDIk 506 (939)
T PRK12902 491 AVTIATNMAGRGTDII 506 (939)
T ss_pred cEEEeccCCCCCcCEe
Confidence 3789999999999974
No 188
>PF02391 MoaE: MoaE protein; InterPro: IPR003448 This family contains the MoaE protein that is involved in biosynthesis of molybdopterin []. Molybdopterin, the universal component of the pterin molybdenum cofactors, contains a dithiolene group serving to bind Mo. Addition of the dithiolene sulphurs to a molybdopterin precursor requires the activity of the converting factor. Converting factor contains the MoaE and MoaD proteins.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 2WP4_B 2OMD_B 1NVJ_E 1FM0_E 3BII_E 1NVI_E 1FMA_E 2QIE_K 2Q5W_E 3RPF_A ....
Probab=21.85 E-value=1.5e+02 Score=19.29 Aligned_cols=30 Identities=30% Similarity=0.371 Sum_probs=17.8
Q ss_pred hhhhheeceeCCCeeEEEEEEcCccHHHHHH
Q 038184 34 YVHRIGRTGQAGKKGVSHPFLTNHNKALAGE 64 (121)
Q Consensus 34 y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~ 64 (121)
.+||+|+. ..|..-..+....+.=...++.
T Consensus 76 i~HR~G~l-~vGe~~v~V~vsa~hR~eaf~A 105 (117)
T PF02391_consen 76 IVHRVGRL-KVGEPIVLVAVSAPHRKEAFEA 105 (117)
T ss_dssp EEEEEEEE-ETTSEEEEEEEEESSHHHHHHH
T ss_pred EEEeeCCC-CCCCeEEEEEEecCCHHHHHHH
Confidence 36888887 6766666665555543333333
No 189
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=21.40 E-value=69 Score=23.27 Aligned_cols=24 Identities=29% Similarity=0.587 Sum_probs=16.0
Q ss_pred hhhhhhhheecee-CCCeeEEEEEE
Q 038184 31 TEDYVHRIGRTGQ-AGKKGVSHPFL 54 (121)
Q Consensus 31 ~~~y~~r~GR~gR-~g~~g~~i~~~ 54 (121)
-++|++|+|++|+ ....|.-++-.
T Consensus 67 ~~~yl~rlG~~~~s~~~~gTdfS~~ 91 (195)
T PF12761_consen 67 GDSYLSRLGRGGKSYKEKGTDFSAT 91 (195)
T ss_pred hHHHHHHhccccCCCCCCCCCCCCC
Confidence 4689999999887 33445554443
No 190
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=20.84 E-value=1.5e+02 Score=22.30 Aligned_cols=44 Identities=25% Similarity=0.374 Sum_probs=30.7
Q ss_pred ccccCCCCCcc--EEEEeCCCCChhhhhhhh--------------------eeceeCCCeeEEEEEEc
Q 038184 10 AARGLDIPDVE--VVINYSFPLTTEDYVHRI--------------------GRTGQAGKKGVSHPFLT 55 (121)
Q Consensus 10 ~~~GlDi~~v~--~Vi~~d~P~~~~~y~~r~--------------------GR~gR~g~~g~~i~~~~ 55 (121)
+.-|+|-++++ +++. +|.++..-..++ ||..|.|..|.++-+..
T Consensus 103 anAGID~SN~~~g~v~L--LP~DPd~sA~~ir~~l~~~~g~~v~VIItDt~gr~~R~G~~gvAIG~aG 168 (243)
T TIGR01916 103 ANAGIDESNVGNGELLL--LPEDPDASAEKIRRGLRELTGVDVGVIITDTNGRPFREGQVGVAIGAAG 168 (243)
T ss_pred eccccccccCCCCeEEe--cCCChHHHHHHHHHHHHHHHCCCEEEEEECCCCCccccCCCCeeeeccC
Confidence 45599999885 3443 788765443332 78889999999887765
Done!