Query 038184
Match_columns 121
No_of_seqs 130 out of 1402
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 14:16:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038184.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038184hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p6n_A ATP-dependent RNA helic 99.9 1.5E-22 5.1E-27 143.5 8.7 84 1-84 105-189 (191)
2 2jgn_A DBX, DDX3, ATP-dependen 99.9 1.6E-22 5.5E-27 142.5 8.8 85 1-85 97-181 (185)
3 2db3_A ATP-dependent RNA helic 99.9 3.2E-22 1.1E-26 156.2 7.6 82 1-82 351-433 (434)
4 2hjv_A ATP-dependent RNA helic 99.8 3.1E-21 1.1E-25 132.9 7.5 72 1-72 86-157 (163)
5 1fuk_A Eukaryotic initiation f 99.8 1.2E-21 4E-26 135.2 4.5 79 1-79 81-159 (165)
6 3eaq_A Heat resistant RNA depe 99.8 5.4E-21 1.8E-25 137.2 7.3 75 1-75 82-156 (212)
7 1t5i_A C_terminal domain of A 99.8 2.5E-21 8.7E-26 134.7 4.6 80 1-80 82-162 (172)
8 2rb4_A ATP-dependent RNA helic 99.8 6.9E-21 2.4E-25 132.4 6.7 74 1-74 85-164 (175)
9 2i4i_A ATP-dependent RNA helic 99.8 1.4E-20 4.8E-25 144.1 7.9 86 1-86 327-412 (417)
10 3i32_A Heat resistant RNA depe 99.8 5E-20 1.7E-24 139.0 7.0 74 1-74 79-152 (300)
11 2yjt_D ATP-dependent RNA helic 99.6 1.4E-20 4.9E-25 130.3 0.0 72 1-72 81-152 (170)
12 2j0s_A ATP-dependent RNA helic 99.8 3.5E-19 1.2E-23 136.4 5.8 78 1-78 327-404 (410)
13 3eiq_A Eukaryotic initiation f 99.8 1.8E-19 6E-24 137.7 3.1 82 1-82 331-412 (414)
14 3i5x_A ATP-dependent RNA helic 99.8 1.9E-18 6.3E-23 137.9 8.2 70 1-70 393-462 (563)
15 1s2m_A Putative ATP-dependent 99.7 1.6E-18 5.5E-23 132.2 7.1 79 1-79 309-387 (400)
16 3sqw_A ATP-dependent RNA helic 99.7 2.9E-18 1E-22 137.9 8.2 69 1-69 342-410 (579)
17 2v1x_A ATP-dependent DNA helic 99.7 8.8E-19 3E-23 142.2 3.2 101 1-102 318-418 (591)
18 1hv8_A Putative ATP-dependent 99.7 6.1E-18 2.1E-22 126.7 6.7 75 1-75 289-363 (367)
19 3fht_A ATP-dependent RNA helic 99.7 9.4E-18 3.2E-22 127.8 6.6 77 1-77 317-400 (412)
20 1xti_A Probable ATP-dependent 99.7 9.7E-18 3.3E-22 127.1 6.0 79 1-79 301-380 (391)
21 2z0m_A 337AA long hypothetical 99.7 1.2E-17 4.2E-22 124.0 6.3 69 1-70 267-335 (337)
22 1oyw_A RECQ helicase, ATP-depe 99.7 1.4E-17 4.7E-22 133.3 7.0 67 1-67 287-353 (523)
23 3oiy_A Reverse gyrase helicase 99.7 2E-17 6.9E-22 127.4 7.3 68 1-70 298-376 (414)
24 1fuu_A Yeast initiation factor 99.7 1.3E-18 4.5E-23 131.8 0.0 80 1-80 310-389 (394)
25 3fmp_B ATP-dependent RNA helic 99.7 3E-18 1E-22 134.4 0.0 77 1-77 384-467 (479)
26 4a2p_A RIG-I, retinoic acid in 99.7 6.8E-17 2.3E-21 127.4 7.2 58 1-60 454-511 (556)
27 3pey_A ATP-dependent RNA helic 99.7 9.8E-17 3.4E-21 121.2 7.6 70 1-70 294-370 (395)
28 3tbk_A RIG-I helicase domain; 99.7 8.9E-17 3E-21 126.4 7.0 63 1-65 453-515 (555)
29 1tf5_A Preprotein translocase 99.6 1.8E-16 6.1E-21 132.6 5.8 58 2-59 482-547 (844)
30 1yks_A Genome polyprotein [con 99.6 2.4E-16 8.2E-21 123.7 6.1 76 1-77 224-322 (440)
31 2ykg_A Probable ATP-dependent 99.6 1.6E-16 5.4E-21 129.4 4.1 63 1-65 462-524 (696)
32 2whx_A Serine protease/ntpase/ 99.6 3.9E-16 1.3E-20 127.3 6.1 77 1-78 402-502 (618)
33 4a2q_A RIG-I, retinoic acid in 99.6 9.9E-16 3.4E-20 127.4 6.9 58 1-60 695-752 (797)
34 3fho_A ATP-dependent RNA helic 99.6 2.4E-16 8.2E-21 125.3 2.3 77 1-77 408-491 (508)
35 3jux_A Protein translocase sub 99.6 1.8E-15 6.3E-20 125.3 7.2 58 2-59 524-589 (822)
36 2wv9_A Flavivirin protease NS2 99.6 3.3E-15 1.1E-19 123.0 6.7 72 1-73 457-552 (673)
37 4gl2_A Interferon-induced heli 99.6 7.1E-15 2.4E-19 119.7 8.3 45 1-45 465-509 (699)
38 2z83_A Helicase/nucleoside tri 99.6 1.9E-15 6.5E-20 119.1 4.4 56 1-57 237-313 (459)
39 1wp9_A ATP-dependent RNA helic 99.6 3.2E-15 1.1E-19 114.5 5.4 58 1-59 420-477 (494)
40 2d7d_A Uvrabc system protein B 99.5 7.1E-15 2.4E-19 120.7 7.4 67 1-68 496-567 (661)
41 2jlq_A Serine protease subunit 99.5 3.9E-15 1.3E-19 117.0 5.6 54 1-55 235-309 (451)
42 4a2w_A RIG-I, retinoic acid in 99.5 7.1E-15 2.4E-19 124.4 7.3 57 1-59 695-751 (936)
43 1gku_B Reverse gyrase, TOP-RG; 99.5 9.9E-15 3.4E-19 124.9 7.2 71 1-71 320-468 (1054)
44 4ddu_A Reverse gyrase; topoiso 99.5 1.4E-14 4.9E-19 124.5 7.8 68 1-70 355-503 (1104)
45 1c4o_A DNA nucleotide excision 99.5 1.4E-14 4.9E-19 118.9 6.9 68 1-69 490-562 (664)
46 3o8b_A HCV NS3 protease/helica 99.5 5.7E-15 2E-19 121.4 3.2 66 2-70 441-531 (666)
47 2fsf_A Preprotein translocase 99.5 1.6E-14 5.5E-19 120.8 5.9 58 2-59 491-585 (853)
48 1nkt_A Preprotein translocase 99.5 7.8E-14 2.7E-18 117.2 8.0 60 2-61 510-621 (922)
49 3dmq_A RNA polymerase-associat 99.4 7.4E-14 2.5E-18 118.7 5.7 69 1-69 557-625 (968)
50 1gm5_A RECG; helicase, replica 99.4 5.6E-14 1.9E-18 117.3 4.0 64 1-64 640-704 (780)
51 1z5z_A Helicase of the SNF2/RA 99.4 6.3E-14 2.1E-18 104.0 3.7 55 3-57 168-224 (271)
52 2xgj_A ATP-dependent RNA helic 99.4 2.6E-13 8.9E-18 115.9 7.3 65 1-65 433-508 (1010)
53 2xau_A PRE-mRNA-splicing facto 99.4 5.6E-14 1.9E-18 117.1 2.1 57 2-59 371-445 (773)
54 2v6i_A RNA helicase; membrane, 99.4 2.7E-13 9.1E-18 106.0 5.5 53 1-54 218-288 (431)
55 3l9o_A ATP-dependent RNA helic 99.4 3.1E-13 1.1E-17 116.2 6.1 57 1-57 531-597 (1108)
56 3rc3_A ATP-dependent RNA helic 99.4 4.3E-13 1.5E-17 110.5 6.7 54 1-55 373-443 (677)
57 2fwr_A DNA repair protein RAD2 99.4 2.3E-13 7.9E-18 106.3 3.4 56 1-56 395-453 (472)
58 2va8_A SSO2462, SKI2-type heli 99.4 4.8E-13 1.6E-17 109.8 5.3 58 1-58 339-409 (715)
59 2oca_A DAR protein, ATP-depend 99.3 2.5E-13 8.6E-18 107.1 2.3 55 1-55 398-453 (510)
60 2zj8_A DNA helicase, putative 99.3 7.1E-13 2.4E-17 109.0 4.9 58 1-58 321-388 (720)
61 2p6r_A Afuhel308 helicase; pro 99.3 1.1E-12 3.8E-17 107.5 5.6 58 1-58 323-389 (702)
62 2eyq_A TRCF, transcription-rep 99.3 2.5E-12 8.7E-17 111.0 6.0 57 1-57 865-922 (1151)
63 1z63_A Helicase of the SNF2/RA 99.2 3.7E-12 1.3E-16 100.2 2.5 55 3-57 397-453 (500)
64 3h1t_A Type I site-specific re 99.2 6.9E-12 2.4E-16 100.8 4.1 44 3-46 502-545 (590)
65 4a4z_A Antiviral helicase SKI2 99.2 1.7E-11 5.7E-16 104.7 6.6 54 1-55 426-490 (997)
66 4f92_B U5 small nuclear ribonu 99.1 6.6E-11 2.2E-15 105.5 5.3 65 1-65 1240-1316(1724)
67 1z3i_X Similar to RAD54-like; 99.0 2.4E-10 8.3E-15 93.3 6.4 55 3-57 472-528 (644)
68 4f92_B U5 small nuclear ribonu 99.0 2.5E-10 8.6E-15 101.8 4.0 64 1-64 405-480 (1724)
69 3mwy_W Chromo domain-containin 98.9 1E-09 3.6E-14 91.5 6.2 56 2-57 627-684 (800)
70 2w00_A HSDR, R.ECOR124I; ATP-b 98.8 1.6E-09 5.6E-14 92.8 4.6 54 1-55 650-707 (1038)
71 2vl7_A XPD; helicase, unknown 96.8 0.00083 2.8E-08 53.7 3.6 28 3-30 431-464 (540)
72 2ipc_A Preprotein translocase 95.2 0.033 1.1E-06 47.7 5.9 38 21-58 662-699 (997)
73 4a15_A XPD helicase, ATP-depen 77.2 4.4 0.00015 32.8 5.6 53 3-55 497-582 (620)
74 3hgt_A HDA1 complex subunit 3; 75.4 6.1 0.00021 29.8 5.7 54 5-58 175-238 (328)
75 3crv_A XPD/RAD3 related DNA he 64.6 4.2 0.00014 32.2 2.8 28 3-30 440-474 (551)
76 4ap8_A Molybdopterin synthase 29.3 57 0.002 21.2 3.4 35 35-70 85-119 (135)
77 1fm0_E Molybdopterin convertin 28.0 59 0.002 21.4 3.4 42 35-77 82-123 (150)
78 2wp4_A Molybdopterin-convertin 26.8 64 0.0022 21.2 3.4 42 35-77 88-129 (147)
79 2q5w_E Molybdopterin-convertin 26.2 66 0.0023 21.2 3.4 42 35-77 80-121 (149)
80 2omd_A Molybdopterin-convertin 25.1 65 0.0022 21.4 3.2 42 35-77 86-127 (154)
81 3rpf_A Molybdopterin synthase 24.8 75 0.0026 20.9 3.4 44 35-79 79-122 (148)
82 1cmk_I CAMP-dependent protein 20.9 23 0.0008 16.5 0.2 9 37-45 8-16 (26)
No 1
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.88 E-value=1.5e-22 Score=143.53 Aligned_cols=84 Identities=42% Similarity=0.716 Sum_probs=76.2
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCc-cHHHHHHHHHHHHHhcccChHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNH-NKALAGELVNVLREARQVVPDA 79 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~-~~~~~~~i~~~~~~~~~~~~~~ 79 (121)
++|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++|+++. +....+.+++.+....+.+|++
T Consensus 105 ~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~~~l~~~~~~~p~~ 184 (191)
T 2p6n_A 105 KDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPV 184 (191)
T ss_dssp CSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHHHHHHHTTCCCCHH
T ss_pred CEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHHHHHHHccCcCCHH
Confidence 479999999999999999999999999999999999999999999999999999876 7888999999999999999999
Q ss_pred HHhhh
Q 038184 80 LLKFG 84 (121)
Q Consensus 80 l~~~~ 84 (121)
+.++.
T Consensus 185 l~~~~ 189 (191)
T 2p6n_A 185 LQVLH 189 (191)
T ss_dssp HHSTT
T ss_pred HHhhc
Confidence 87764
No 2
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.88 E-value=1.6e-22 Score=142.51 Aligned_cols=85 Identities=44% Similarity=0.719 Sum_probs=74.9
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDAL 80 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 80 (121)
++|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++|+++.+....+.+++.+....+.+|+++
T Consensus 97 ~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l 176 (185)
T 2jgn_A 97 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWL 176 (185)
T ss_dssp SSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHHH
T ss_pred CeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCCHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Hhhhh
Q 038184 81 LKFGT 85 (121)
Q Consensus 81 ~~~~~ 85 (121)
..++.
T Consensus 177 ~~~a~ 181 (185)
T 2jgn_A 177 ENMAY 181 (185)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 87654
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.86 E-value=3.2e-22 Score=156.22 Aligned_cols=82 Identities=45% Similarity=0.805 Sum_probs=76.6
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcC-ccHHHHHHHHHHHHHhcccChHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTN-HNKALAGELVNVLREARQVVPDA 79 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~-~~~~~~~~i~~~~~~~~~~~~~~ 79 (121)
++|||||++++||+|+|+|++|||||+|.++.+|+||+|||||.|+.|.+++|+++ .+......+.+.+....+.+|++
T Consensus 351 ~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~ 430 (434)
T 2db3_A 351 MKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDF 430 (434)
T ss_dssp CSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGG
T ss_pred CcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHH
Confidence 47999999999999999999999999999999999999999999999999999984 57788899999999999999998
Q ss_pred HHh
Q 038184 80 LLK 82 (121)
Q Consensus 80 l~~ 82 (121)
|..
T Consensus 431 l~~ 433 (434)
T 2db3_A 431 LRT 433 (434)
T ss_dssp GC-
T ss_pred HHh
Confidence 754
No 4
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.84 E-value=3.1e-21 Score=132.91 Aligned_cols=72 Identities=44% Similarity=0.748 Sum_probs=66.8
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHh
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREA 72 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~ 72 (121)
++|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++|+++.+...++.+++.+...
T Consensus 86 ~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 157 (163)
T 2hjv_A 86 YRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFE 157 (163)
T ss_dssp CSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSC
T ss_pred CeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCC
Confidence 479999999999999999999999999999999999999999999999999999999999888887766433
No 5
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.84 E-value=1.2e-21 Score=135.16 Aligned_cols=79 Identities=38% Similarity=0.694 Sum_probs=66.4
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDA 79 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 79 (121)
++|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++|+++.+...+..+++.+....+.+|..
T Consensus 81 ~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (165)
T 1fuk_A 81 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 159 (165)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSC
T ss_pred CEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCcc
Confidence 4799999999999999999999999999999999999999999999999999999999888888877776666655543
No 6
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.83 E-value=5.4e-21 Score=137.16 Aligned_cols=75 Identities=37% Similarity=0.584 Sum_probs=67.1
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhccc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQV 75 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~ 75 (121)
++|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++|+++.+...++.+++.+......
T Consensus 82 ~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~ 156 (212)
T 3eaq_A 82 VRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKR 156 (212)
T ss_dssp CCEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEE
T ss_pred CeEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCee
Confidence 479999999999999999999999999999999999999999999999999999999999998888877654443
No 7
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.83 E-value=2.5e-21 Score=134.74 Aligned_cols=80 Identities=28% Similarity=0.614 Sum_probs=70.0
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCc-cHHHHHHHHHHHHHhcccChHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNH-NKALAGELVNVLREARQVVPDA 79 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~-~~~~~~~i~~~~~~~~~~~~~~ 79 (121)
++|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++|+++. +...++.+++.+......+|..
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 161 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC--
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChh
Confidence 479999999999999999999999999999999999999999999999999999875 5677788888777777777766
Q ss_pred H
Q 038184 80 L 80 (121)
Q Consensus 80 l 80 (121)
+
T Consensus 162 ~ 162 (172)
T 1t5i_A 162 I 162 (172)
T ss_dssp -
T ss_pred h
Confidence 4
No 8
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=6.9e-21 Score=132.39 Aligned_cols=74 Identities=30% Similarity=0.584 Sum_probs=62.6
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCC------CChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFP------LTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQ 74 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P------~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~ 74 (121)
++|||||+++++|+|+|++++||+||+| .++.+|+||+||+||.|+.|.+++|+++.+...+..+++.+....+
T Consensus 85 ~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~ 164 (175)
T 2rb4_A 85 EKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIK 164 (175)
T ss_dssp CSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCCE
T ss_pred CeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCccc
Confidence 4799999999999999999999999999 9999999999999999999999999999988877777766654333
No 9
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.82 E-value=1.4e-20 Score=144.09 Aligned_cols=86 Identities=43% Similarity=0.713 Sum_probs=79.6
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDAL 80 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 80 (121)
++|||||+++++|+|+|++++||+||+|.++.+|+||+||+||.|+.|.+++|+++.+....+.+.+.+....+.+|.++
T Consensus 327 ~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l 406 (417)
T 2i4i_A 327 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWL 406 (417)
T ss_dssp SCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHHH
T ss_pred CCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcCcCCHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhh
Q 038184 81 LKFGTH 86 (121)
Q Consensus 81 ~~~~~~ 86 (121)
..+...
T Consensus 407 ~~~~~~ 412 (417)
T 2i4i_A 407 ENMAYE 412 (417)
T ss_dssp HHHHTC
T ss_pred HHHHHh
Confidence 876543
No 10
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.80 E-value=5e-20 Score=138.98 Aligned_cols=74 Identities=38% Similarity=0.599 Sum_probs=63.3
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQ 74 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~ 74 (121)
++|||||+++++|+|+|+|++||+||+|++..+|+||+|||||.|+.|.+++|+++.+...++.+++.+.....
T Consensus 79 ~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~ 152 (300)
T 3i32_A 79 VRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFK 152 (300)
T ss_dssp CCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCE
T ss_pred ceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcce
Confidence 47999999999999999999999999999999999999999999999999999999998888888777665433
No 11
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.65 E-value=1.4e-20 Score=130.35 Aligned_cols=72 Identities=43% Similarity=0.783 Sum_probs=65.8
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHh
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREA 72 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~ 72 (121)
++|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++++++.+...+..+++.+...
T Consensus 81 ~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 152 (170)
T 2yjt_D 81 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEP 152 (170)
Confidence 469999999999999999999999999999999999999999999999999999988888887777665443
No 12
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.76 E-value=3.5e-19 Score=136.40 Aligned_cols=78 Identities=36% Similarity=0.669 Sum_probs=71.7
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPD 78 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~ 78 (121)
++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++.+...++.++..+.....++|.
T Consensus 327 ~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (410)
T 2j0s_A 327 SRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 404 (410)
T ss_dssp SCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred CCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceeccc
Confidence 469999999999999999999999999999999999999999999999999999999999999888887766666653
No 13
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.76 E-value=1.8e-19 Score=137.68 Aligned_cols=82 Identities=33% Similarity=0.624 Sum_probs=63.7
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDAL 80 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 80 (121)
++|||||+++++|+|+|++++||+||+|.++.+|+||+||+||.|+.|.+++|+++.+...++.+++.+......+|..+
T Consensus 331 ~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (414)
T 3eiq_A 331 SRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNV 410 (414)
T ss_dssp --CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC--
T ss_pred CcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhh
Confidence 36899999999999999999999999999999999999999999999999999999999999999988888887777665
Q ss_pred Hh
Q 038184 81 LK 82 (121)
Q Consensus 81 ~~ 82 (121)
..
T Consensus 411 ~~ 412 (414)
T 3eiq_A 411 AD 412 (414)
T ss_dssp --
T ss_pred hh
Confidence 43
No 14
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.75 E-value=1.9e-18 Score=137.87 Aligned_cols=70 Identities=36% Similarity=0.626 Sum_probs=65.4
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLR 70 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~ 70 (121)
++|||||+++++|||+|+|++||+||+|.++.+|+||+|||||.|+.|.+++|+++.+...++.+++...
T Consensus 393 ~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 462 (563)
T 3i5x_A 393 SGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 462 (563)
T ss_dssp SEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred CCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhC
Confidence 4799999999999999999999999999999999999999999999999999999999888888876543
No 15
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.75 E-value=1.6e-18 Score=132.17 Aligned_cols=79 Identities=33% Similarity=0.588 Sum_probs=72.0
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDA 79 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 79 (121)
++|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++|+++.+...++++++.+....+.+|..
T Consensus 309 ~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 387 (400)
T 1s2m_A 309 VRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPAT 387 (400)
T ss_dssp SSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSS
T ss_pred CcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccccccc
Confidence 4799999999999999999999999999999999999999999999999999999999998888888776666666544
No 16
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.74 E-value=2.9e-18 Score=137.88 Aligned_cols=69 Identities=36% Similarity=0.633 Sum_probs=65.1
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVL 69 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~ 69 (121)
++|||||+++++|||+|+|++||+||+|.++.+|+||+|||||.|+.|.+++|+++.+...++.+++..
T Consensus 342 ~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 410 (579)
T 3sqw_A 342 SGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 410 (579)
T ss_dssp SEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred CeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHh
Confidence 479999999999999999999999999999999999999999999999999999999988888887654
No 17
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.73 E-value=8.8e-19 Score=142.25 Aligned_cols=101 Identities=24% Similarity=0.308 Sum_probs=75.9
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDAL 80 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 80 (121)
++|||||+++++|||+|+|++|||||+|.++++|+||+|||||.|..|.+++|+++.|......+..... ........+
T Consensus 318 ~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~~~~~-~~~~~l~~~ 396 (591)
T 2v1x_A 318 IQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVMEN-VGQQKLYEM 396 (591)
T ss_dssp SSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHTTTST-THHHHHHHH
T ss_pred CeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHHhhhh-hhHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999888776655532110 001111233
Q ss_pred Hhhhhhhhhhhhhhhccccccc
Q 038184 81 LKFGTHVKKKESKLYGAHFREI 102 (121)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~ 102 (121)
..+......+....+..+|++.
T Consensus 397 ~~~~~~~~~Crr~~ll~~f~e~ 418 (591)
T 2v1x_A 397 VSYCQNISKCRRVLMAQHFDEV 418 (591)
T ss_dssp HHHHTCSSSCHHHHHHHHHTCC
T ss_pred HHHHhcccccHHHHHHHHcCCC
Confidence 3444434555556666667664
No 18
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.72 E-value=6.1e-18 Score=126.72 Aligned_cols=75 Identities=35% Similarity=0.628 Sum_probs=68.5
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhccc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQV 75 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~ 75 (121)
++|||||+++++|+|+|++++||+|++|+++.+|+||+||+||.|+.|.+++++++.+...++.+++.++.....
T Consensus 289 ~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 363 (367)
T 1hv8_A 289 IRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKK 363 (367)
T ss_dssp SSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCC
T ss_pred CeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCce
Confidence 469999999999999999999999999999999999999999999999999999999999888887776654443
No 19
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.71 E-value=9.4e-18 Score=127.82 Aligned_cols=77 Identities=31% Similarity=0.606 Sum_probs=66.5
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCC------CChhhhhhhheeceeCCCeeEEEEEEcCcc-HHHHHHHHHHHHHhc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFP------LTTEDYVHRIGRTGQAGKKGVSHPFLTNHN-KALAGELVNVLREAR 73 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P------~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~-~~~~~~i~~~~~~~~ 73 (121)
++|||||+++++|+|+|++++||+||+| .+..+|+||+||+||.|+.|.+++++++.+ ...++.+++.+....
T Consensus 317 ~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~ 396 (412)
T 3fht_A 317 EKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKI 396 (412)
T ss_dssp CSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCC
T ss_pred CcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCcc
Confidence 4799999999999999999999999999 467899999999999999999999998764 677777777776655
Q ss_pred ccCh
Q 038184 74 QVVP 77 (121)
Q Consensus 74 ~~~~ 77 (121)
..++
T Consensus 397 ~~~~ 400 (412)
T 3fht_A 397 ERLD 400 (412)
T ss_dssp EEC-
T ss_pred ccCC
Confidence 5554
No 20
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.71 E-value=9.7e-18 Score=127.15 Aligned_cols=79 Identities=29% Similarity=0.616 Sum_probs=66.8
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCcc-HHHHHHHHHHHHHhcccChHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHN-KALAGELVNVLREARQVVPDA 79 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~-~~~~~~i~~~~~~~~~~~~~~ 79 (121)
++|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++++++.+ ...++.+++.+....+++|..
T Consensus 301 ~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 301 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp CSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred CcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 4699999999999999999999999999999999999999999999999999998764 455566666555555555543
No 21
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.70 E-value=1.2e-17 Score=123.96 Aligned_cols=69 Identities=43% Similarity=0.707 Sum_probs=61.4
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLR 70 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~ 70 (121)
++|||||+++++|+|+|++++||+|++|+++.+|+||+||+||.|+.|.+++|+. .+....+.+++.+.
T Consensus 267 ~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 267 YDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp CSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred CcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 4799999999999999999999999999999999999999999999999999999 78777777766553
No 22
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.70 E-value=1.4e-17 Score=133.28 Aligned_cols=67 Identities=24% Similarity=0.424 Sum_probs=61.7
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVN 67 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~ 67 (121)
++|||||+++++|+|+|+|++|||||+|.++++|+||+||+||.|..|.+++|+++.|....+.+..
T Consensus 287 ~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 287 LQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp CSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred CeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 4799999999999999999999999999999999999999999999999999999888776665543
No 23
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.70 E-value=2e-17 Score=127.38 Aligned_cols=68 Identities=25% Similarity=0.410 Sum_probs=62.7
Q ss_pred CcEEEE----eccccccCCCCC-ccEEEEeCCC--CChhhhhhhheeceeCC----CeeEEEEEEcCccHHHHHHHHHHH
Q 038184 1 MYLQVA----TDIAARGLDIPD-VEVVINYSFP--LTTEDYVHRIGRTGQAG----KKGVSHPFLTNHNKALAGELVNVL 69 (121)
Q Consensus 1 i~iLV~----Td~~~~GlDi~~-v~~Vi~~d~P--~~~~~y~~r~GR~gR~g----~~g~~i~~~~~~~~~~~~~i~~~~ 69 (121)
++|||| |+++++|+|+|+ |++||+||+| .++.+|+||+||+||.| +.|.+++|+ .+...++.+++.+
T Consensus 298 ~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~ 375 (414)
T 3oiy_A 298 INILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRL 375 (414)
T ss_dssp CSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHH
T ss_pred CeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHh
Confidence 479999 999999999999 9999999999 99999999999999988 589999999 6777788888887
Q ss_pred H
Q 038184 70 R 70 (121)
Q Consensus 70 ~ 70 (121)
.
T Consensus 376 ~ 376 (414)
T 3oiy_A 376 L 376 (414)
T ss_dssp H
T ss_pred c
Confidence 7
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.69 E-value=1.3e-18 Score=131.85 Aligned_cols=80 Identities=38% Similarity=0.697 Sum_probs=0.0
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDAL 80 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 80 (121)
++|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++++++.+...++.+++.+......+|..+
T Consensus 310 ~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 389 (394)
T 1fuu_A 310 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDI 389 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcch
Confidence 36899999999999999999999999999999999999999999999999999999998888888888877777666544
No 25
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.68 E-value=3e-18 Score=134.43 Aligned_cols=77 Identities=31% Similarity=0.623 Sum_probs=0.0
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCC------ChhhhhhhheeceeCCCeeEEEEEEcCcc-HHHHHHHHHHHHHhc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPL------TTEDYVHRIGRTGQAGKKGVSHPFLTNHN-KALAGELVNVLREAR 73 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~------~~~~y~~r~GR~gR~g~~g~~i~~~~~~~-~~~~~~i~~~~~~~~ 73 (121)
++|||||+++++|+|+|++++||+||+|. ++.+|+||+|||||.|+.|.+++|+++.+ ...++.+.+.+....
T Consensus 384 ~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~ 463 (479)
T 3fmp_B 384 EKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKI 463 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCc
Confidence 46999999999999999999999999994 67899999999999999999999998654 666677766666554
Q ss_pred ccCh
Q 038184 74 QVVP 77 (121)
Q Consensus 74 ~~~~ 77 (121)
..++
T Consensus 464 ~~l~ 467 (479)
T 3fmp_B 464 ERLD 467 (479)
T ss_dssp ----
T ss_pred eECC
Confidence 4443
No 26
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.67 E-value=6.8e-17 Score=127.44 Aligned_cols=58 Identities=22% Similarity=0.348 Sum_probs=35.6
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKA 60 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~ 60 (121)
++|||||+++++|||+|+|++||+||+|+++.+|+||+|| ||. +.|.++.|+++.+..
T Consensus 454 ~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 454 NRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred eEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 4799999999999999999999999999999999999999 999 889999999876543
No 27
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.67 E-value=9.8e-17 Score=121.20 Aligned_cols=70 Identities=37% Similarity=0.736 Sum_probs=60.9
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCC------ChhhhhhhheeceeCCCeeEEEEEEcCcc-HHHHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPL------TTEDYVHRIGRTGQAGKKGVSHPFLTNHN-KALAGELVNVLR 70 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~------~~~~y~~r~GR~gR~g~~g~~i~~~~~~~-~~~~~~i~~~~~ 70 (121)
++|||||+++++|+|+|++++||+||+|+ ++.+|+||+||+||.|+.|.+++|+.+.+ ......+.+.+.
T Consensus 294 ~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 294 SKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp CCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred CCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 47999999999999999999999999999 99999999999999999999999998654 444455555444
No 28
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.66 E-value=8.9e-17 Score=126.39 Aligned_cols=63 Identities=21% Similarity=0.351 Sum_probs=57.1
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGEL 65 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i 65 (121)
++|||||+++++|||+|+|++||+||+|+++.+|+||+|| ||. +.|.++.|+++.+......+
T Consensus 453 ~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 453 NNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp CSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred eeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 4799999999999999999999999999999999999999 899 89999999998766554444
No 29
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.63 E-value=1.8e-16 Score=132.59 Aligned_cols=58 Identities=24% Similarity=0.363 Sum_probs=55.2
Q ss_pred cEEEEeccccccCCCC--------CccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccH
Q 038184 2 YLQVATDIAARGLDIP--------DVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNK 59 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~--------~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~ 59 (121)
+||||||+++||+||+ ++.+|||||+|.+...|+||+|||||.|..|.+++|++.+|.
T Consensus 482 ~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 482 AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 5999999999999999 788999999999999999999999999999999999997764
No 30
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.63 E-value=2.4e-16 Score=123.69 Aligned_cols=76 Identities=24% Similarity=0.257 Sum_probs=66.4
Q ss_pred CcEEEEeccccccCCCCCccEEEE-------------------eCCCCChhhhhhhheeceeC-CCeeEEEEEE---cCc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVIN-------------------YSFPLTTEDYVHRIGRTGQA-GKKGVSHPFL---TNH 57 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~-------------------~d~P~~~~~y~~r~GR~gR~-g~~g~~i~~~---~~~ 57 (121)
++|||||+++++|+|+| +++||+ |+.|.+..+|+||+||+||. ++.|.+++|+ ++.
T Consensus 224 ~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~ 302 (440)
T 1yks_A 224 PDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSEN 302 (440)
T ss_dssp CSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCC
T ss_pred ceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChh
Confidence 47999999999999999 999986 99999999999999999997 6899999996 677
Q ss_pred cHHHHHHHHHHHHHhcccCh
Q 038184 58 NKALAGELVNVLREARQVVP 77 (121)
Q Consensus 58 ~~~~~~~i~~~~~~~~~~~~ 77 (121)
+...++.++..+......++
T Consensus 303 ~~~~l~~l~~~~~~~~~~l~ 322 (440)
T 1yks_A 303 NAHHVCWLEASMLLDNMEVR 322 (440)
T ss_dssp CTTBHHHHHHHHHHTTSCCG
T ss_pred hhhhhhhhhHHhcccccccc
Confidence 88888888877766555554
No 31
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.62 E-value=1.6e-16 Score=129.37 Aligned_cols=63 Identities=22% Similarity=0.367 Sum_probs=42.8
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGEL 65 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i 65 (121)
++|||||+++++|||+|+|++||+||+|+++.+|+||+|| ||. +.|.++.+++..+......+
T Consensus 462 ~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 462 HNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp CSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred ccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 4799999999999999999999999999999999999999 998 78999999987776544444
No 32
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.62 E-value=3.9e-16 Score=127.35 Aligned_cols=77 Identities=19% Similarity=0.211 Sum_probs=66.3
Q ss_pred CcEEEEeccccccCCCCCccEE--------------------EEeCCCCChhhhhhhheeceeCCC-eeEEEEEEc---C
Q 038184 1 MYLQVATDIAARGLDIPDVEVV--------------------INYSFPLTTEDYVHRIGRTGQAGK-KGVSHPFLT---N 56 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~V--------------------i~~d~P~~~~~y~~r~GR~gR~g~-~g~~i~~~~---~ 56 (121)
++|||||+++++|+|++ +++| ||||+|.+..+|+||+|||||.|. .|.+++|++ +
T Consensus 402 ~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~ 480 (618)
T 2whx_A 402 WDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLK 480 (618)
T ss_dssp CSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCC
T ss_pred cEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCch
Confidence 47999999999999997 9888 888999999999999999999964 999999998 7
Q ss_pred ccHHHHHHHHHHHHHhcccChH
Q 038184 57 HNKALAGELVNVLREARQVVPD 78 (121)
Q Consensus 57 ~~~~~~~~i~~~~~~~~~~~~~ 78 (121)
.+...++.++..+......+++
T Consensus 481 ~d~~~l~~le~~i~l~~~~~~~ 502 (618)
T 2whx_A 481 NDEDHAHWTEAKMLLDNIYTPE 502 (618)
T ss_dssp CCTTCHHHHHHHHHHTTCCCTT
T ss_pred hhHHHHHHHHhHhccccccCCc
Confidence 8888888888877665444443
No 33
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.60 E-value=9.9e-16 Score=127.36 Aligned_cols=58 Identities=22% Similarity=0.348 Sum_probs=40.5
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKA 60 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~ 60 (121)
++|||||+++++|||+|+|++||+||+|+++.+|+||+|| ||. +.|.++.|+++.+..
T Consensus 695 ~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 695 NRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp CSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred ceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 4799999999999999999999999999999999999999 999 889999999876543
No 34
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.59 E-value=2.4e-16 Score=125.30 Aligned_cols=77 Identities=34% Similarity=0.627 Sum_probs=50.0
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCC------CChhhhhhhheeceeCCCeeEEEEEEcC-ccHHHHHHHHHHHHHhc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFP------LTTEDYVHRIGRTGQAGKKGVSHPFLTN-HNKALAGELVNVLREAR 73 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P------~~~~~y~~r~GR~gR~g~~g~~i~~~~~-~~~~~~~~i~~~~~~~~ 73 (121)
++|||||+++++|+|+|++++||+||+| .++.+|+||+||+||.|+.|.+++|+.+ .+....+.+++.+....
T Consensus 408 ~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i 487 (508)
T 3fho_A 408 SKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPI 487 (508)
T ss_dssp CCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCC
T ss_pred CeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCc
Confidence 4689999999999999999999999999 8899999999999999999999999974 55666677766665555
Q ss_pred ccCh
Q 038184 74 QVVP 77 (121)
Q Consensus 74 ~~~~ 77 (121)
..+|
T Consensus 488 ~~l~ 491 (508)
T 3fho_A 488 TRVP 491 (508)
T ss_dssp C---
T ss_pred ccCC
Confidence 5554
No 35
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.58 E-value=1.8e-15 Score=125.26 Aligned_cols=58 Identities=28% Similarity=0.331 Sum_probs=54.8
Q ss_pred cEEEEeccccccCCCC--------CccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccH
Q 038184 2 YLQVATDIAARGLDIP--------DVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNK 59 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~--------~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~ 59 (121)
+|+|||++++||+||+ +..+||||++|.+...|+||+|||||.|..|.+++|++.+|.
T Consensus 524 ~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 524 MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 5999999999999998 566999999999999999999999999999999999998874
No 36
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.56 E-value=3.3e-15 Score=122.99 Aligned_cols=72 Identities=19% Similarity=0.230 Sum_probs=62.1
Q ss_pred CcEEEEeccccccCCCCCccEEEE--------------------eCCCCChhhhhhhheeceeC-CCeeEEEEEE---cC
Q 038184 1 MYLQVATDIAARGLDIPDVEVVIN--------------------YSFPLTTEDYVHRIGRTGQA-GKKGVSHPFL---TN 56 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~--------------------~d~P~~~~~y~~r~GR~gR~-g~~g~~i~~~---~~ 56 (121)
++|||||+++++|||+| +++||| ||+|.+..+|+||+||+||. ++.|.+++|+ ++
T Consensus 457 ~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~ 535 (673)
T 2wv9_A 457 WDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSE 535 (673)
T ss_dssp CSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCC
T ss_pred ceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCCh
Confidence 47999999999999999 999998 67999999999999999999 7899999996 57
Q ss_pred ccHHHHHHHHHHHHHhc
Q 038184 57 HNKALAGELVNVLREAR 73 (121)
Q Consensus 57 ~~~~~~~~i~~~~~~~~ 73 (121)
.+...++.++..+....
T Consensus 536 ~d~~~l~~ie~~~~l~~ 552 (673)
T 2wv9_A 536 DDTMLAHWTEAKILLDN 552 (673)
T ss_dssp CCTTBHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhhhh
Confidence 77777777766654433
No 37
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.56 E-value=7.1e-15 Score=119.66 Aligned_cols=45 Identities=31% Similarity=0.490 Sum_probs=41.6
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCC
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAG 45 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g 45 (121)
++|||||+++++|||+|+|++||+||+|+++.+|+||+||+||.|
T Consensus 465 ~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 465 INLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE 509 (699)
T ss_dssp -CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS
T ss_pred CcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC
Confidence 479999999999999999999999999999999999999976654
No 38
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.55 E-value=1.9e-15 Score=119.08 Aligned_cols=56 Identities=23% Similarity=0.324 Sum_probs=49.7
Q ss_pred CcEEEEeccccccCCCCCccEEEE--------------------eCCCCChhhhhhhheeceeCCC-eeEEEEEEcCc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVIN--------------------YSFPLTTEDYVHRIGRTGQAGK-KGVSHPFLTNH 57 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~--------------------~d~P~~~~~y~~r~GR~gR~g~-~g~~i~~~~~~ 57 (121)
++|||||+++++|+|+|+ ++||+ ||+|.+..+|+||+|||||.|. .|.+++|+++.
T Consensus 237 ~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 237 WDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 479999999999999999 99999 8899999999999999999997 99999999864
No 39
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.55 E-value=3.2e-15 Score=114.54 Aligned_cols=58 Identities=28% Similarity=0.466 Sum_probs=54.5
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNK 59 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~ 59 (121)
++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|. |.++.|+++...
T Consensus 420 ~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 420 FNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTR 477 (494)
T ss_dssp CSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSH
T ss_pred ceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCH
Confidence 4799999999999999999999999999999999999999999998 999999987653
No 40
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.55 E-value=7.1e-15 Score=120.67 Aligned_cols=67 Identities=19% Similarity=0.317 Sum_probs=60.0
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCC-----CCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSF-----PLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNV 68 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~-----P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~ 68 (121)
++|||||+++++|+|+|+|++||+||. |.+..+|+||+|||||. ..|.+++|+++.+..+.+.+.+.
T Consensus 496 ~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~~~ 567 (661)
T 2d7d_A 496 YDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAINET 567 (661)
T ss_dssp CSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHHHHH
T ss_pred eEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHHHHH
Confidence 479999999999999999999999998 99999999999999998 78999999998877666555443
No 41
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.55 E-value=3.9e-15 Score=116.97 Aligned_cols=54 Identities=26% Similarity=0.322 Sum_probs=50.6
Q ss_pred CcEEEEeccccccCCCCCccEEEEeC--------------------CCCChhhhhhhheeceeCCC-eeEEEEEEc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYS--------------------FPLTTEDYVHRIGRTGQAGK-KGVSHPFLT 55 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d--------------------~P~~~~~y~~r~GR~gR~g~-~g~~i~~~~ 55 (121)
++|||||+++++|+|+|+ ++||||| .|.+..+|+||+|||||.|. .|.+++|+.
T Consensus 235 ~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 235 WDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 309 (451)
T ss_dssp CSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred ceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeC
Confidence 479999999999999999 9999999 99999999999999999998 888888874
No 42
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.54 E-value=7.1e-15 Score=124.43 Aligned_cols=57 Identities=23% Similarity=0.353 Sum_probs=40.4
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNK 59 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~ 59 (121)
++|||||+++++|||+|+|++||+||+|+++.+|+||+|| ||. +.|.++.+++..+.
T Consensus 695 ~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 695 NRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp CSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred eeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 4799999999999999999999999999999999999999 999 78899999986554
No 43
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.53 E-value=9.9e-15 Score=124.93 Aligned_cols=71 Identities=20% Similarity=0.356 Sum_probs=58.8
Q ss_pred CcEEEE----eccccccCCCCCc-cEEEEeCCC-----------------------------------------------
Q 038184 1 MYLQVA----TDIAARGLDIPDV-EVVINYSFP----------------------------------------------- 28 (121)
Q Consensus 1 i~iLV~----Td~~~~GlDi~~v-~~Vi~~d~P----------------------------------------------- 28 (121)
++|||| |++++||||+|+| ++||+||+|
T Consensus 320 ~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (1054)
T 1gku_B 320 IDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREI 399 (1054)
T ss_dssp CSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHH
T ss_pred CcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 479999 9999999999996 999999999
Q ss_pred ------------------------CChhhhhhhheeceeCCCeeE--EEEEEcCccHHHHHHHHHHHHH
Q 038184 29 ------------------------LTTEDYVHRIGRTGQAGKKGV--SHPFLTNHNKALAGELVNVLRE 71 (121)
Q Consensus 29 ------------------------~~~~~y~~r~GR~gR~g~~g~--~i~~~~~~~~~~~~~i~~~~~~ 71 (121)
.+..+|+||+|||||.|..|. +++++...+...++.+++.++.
T Consensus 400 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 400 LKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp HHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred HHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 789999999999999887764 8888888888888888888774
No 44
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.53 E-value=1.4e-14 Score=124.49 Aligned_cols=68 Identities=25% Similarity=0.424 Sum_probs=58.6
Q ss_pred CcEEEE----eccccccCCCCC-ccEEEEeCCCC----------------------------------------------
Q 038184 1 MYLQVA----TDIAARGLDIPD-VEVVINYSFPL---------------------------------------------- 29 (121)
Q Consensus 1 i~iLV~----Td~~~~GlDi~~-v~~Vi~~d~P~---------------------------------------------- 29 (121)
++|||| |++++||||+|+ |++|||||+|.
T Consensus 355 ~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~ 434 (1104)
T 4ddu_A 355 INILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQ 434 (1104)
T ss_dssp CSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCH
T ss_pred CCEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 479999 999999999999 99999999999
Q ss_pred --------------------------ChhhhhhhheeceeCCC----eeEEEEEEcCccHHHHHHHHHHHH
Q 038184 30 --------------------------TTEDYVHRIGRTGQAGK----KGVSHPFLTNHNKALAGELVNVLR 70 (121)
Q Consensus 30 --------------------------~~~~y~~r~GR~gR~g~----~g~~i~~~~~~~~~~~~~i~~~~~ 70 (121)
++.+|+||+|||||.+. .|.+++++ .|...++.+.+.++
T Consensus 435 ~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 435 KEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 503 (1104)
T ss_dssp HHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHh
Confidence 78899999999999664 44555555 67888888888776
No 45
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.52 E-value=1.4e-14 Score=118.90 Aligned_cols=68 Identities=19% Similarity=0.316 Sum_probs=60.1
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCC-----CCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSF-----PLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVL 69 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~-----P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~ 69 (121)
++|||||+++++|+|+|+|++||+||. |.+..+|+||+|||||.+ .|.+++|+++.+..+.+.+.+..
T Consensus 490 ~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~~~~ 562 (664)
T 1c4o_A 490 YDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAIEETN 562 (664)
T ss_dssp CSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHHHHHH
T ss_pred ceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHHHHHH
Confidence 479999999999999999999999998 999999999999999995 89999999988776665555443
No 46
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.50 E-value=5.7e-15 Score=121.42 Aligned_cols=66 Identities=29% Similarity=0.443 Sum_probs=55.6
Q ss_pred cEEEEeccccccCCCCCccEEE----------EeC-----------CCCChhhhhhhheeceeCCCeeEEEEEEcCccHH
Q 038184 2 YLQVATDIAARGLDIPDVEVVI----------NYS-----------FPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKA 60 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi----------~~d-----------~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~ 60 (121)
+|||||++++||||++ |++|| ||| +|.+.++|+||+||+|| |+.|. ++|+++.+..
T Consensus 441 ~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 441 VVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERP 517 (666)
T ss_dssp EEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBC
T ss_pred cEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhh
Confidence 6999999999999997 99988 788 99999999999999999 89999 9999876654
Q ss_pred H--H--HHHHHHHH
Q 038184 61 L--A--GELVNVLR 70 (121)
Q Consensus 61 ~--~--~~i~~~~~ 70 (121)
. + ..+++..+
T Consensus 518 ~~~l~~~~i~~~~~ 531 (666)
T 3o8b_A 518 SGMFDSSVLCECYD 531 (666)
T ss_dssp SSBCCHHHHHHHHH
T ss_pred cccccHHHHHHHhc
Confidence 3 2 44444443
No 47
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.50 E-value=1.6e-14 Score=120.81 Aligned_cols=58 Identities=28% Similarity=0.332 Sum_probs=54.1
Q ss_pred cEEEEeccccccCCCCC--------------------------------c-----cEEEEeCCCCChhhhhhhheeceeC
Q 038184 2 YLQVATDIAARGLDIPD--------------------------------V-----EVVINYSFPLTTEDYVHRIGRTGQA 44 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~--------------------------------v-----~~Vi~~d~P~~~~~y~~r~GR~gR~ 44 (121)
+|+||||+++||+||+. | .|||+|++|.+...|.||+|||||.
T Consensus 491 ~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRq 570 (853)
T 2fsf_A 491 AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQ 570 (853)
T ss_dssp CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGG
T ss_pred eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccC
Confidence 58999999999999987 3 5999999999999999999999999
Q ss_pred CCeeEEEEEEcCccH
Q 038184 45 GKKGVSHPFLTNHNK 59 (121)
Q Consensus 45 g~~g~~i~~~~~~~~ 59 (121)
|..|.+++|++..|.
T Consensus 571 Gd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 571 GDAGSSRFYLSMEDA 585 (853)
T ss_dssp GCCEEEEEEEETTSG
T ss_pred CCCeeEEEEecccHH
Confidence 999999999987664
No 48
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.47 E-value=7.8e-14 Score=117.22 Aligned_cols=60 Identities=27% Similarity=0.273 Sum_probs=55.5
Q ss_pred cEEEEeccccccCCCCCc----------------------------------------------------cEEEEeCCCC
Q 038184 2 YLQVATDIAARGLDIPDV----------------------------------------------------EVVINYSFPL 29 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v----------------------------------------------------~~Vi~~d~P~ 29 (121)
.|+|||++++||+||+.+ .|||+|++|.
T Consensus 510 ~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pe 589 (922)
T 1nkt_A 510 GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHE 589 (922)
T ss_dssp CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCS
T ss_pred eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCC
Confidence 589999999999999975 4999999999
Q ss_pred ChhhhhhhheeceeCCCeeEEEEEEcCccHHH
Q 038184 30 TTEDYVHRIGRTGQAGKKGVSHPFLTNHNKAL 61 (121)
Q Consensus 30 ~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~ 61 (121)
+...|.||+|||||.|..|.+++|++.+|..+
T Consensus 590 s~riy~qr~GRTGRqGdpG~s~fflSleD~l~ 621 (922)
T 1nkt_A 590 SRRIDNQLRGRSGRQGDPGESRFYLSLGDELM 621 (922)
T ss_dssp SHHHHHHHHHTSSGGGCCEEEEEEEETTSHHH
T ss_pred CHHHHHHHhcccccCCCCeeEEEEechhHHHH
Confidence 99999999999999999999999999877543
No 49
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.44 E-value=7.4e-14 Score=118.66 Aligned_cols=69 Identities=16% Similarity=0.267 Sum_probs=55.7
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVL 69 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~ 69 (121)
++|||||+++++|+|+|++++||+||+|+++..|.||+||+||.|+.+.++++....+...-+.+...+
T Consensus 557 ~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~ 625 (968)
T 3dmq_A 557 AQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWY 625 (968)
T ss_dssp CEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHH
T ss_pred ccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999988666554333323333444444
No 50
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.43 E-value=5.6e-14 Score=117.34 Aligned_cols=64 Identities=16% Similarity=0.250 Sum_probs=55.8
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCC-ChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPL-TTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGE 64 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~-~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~ 64 (121)
++|||||+++++|+|+|++++||+||.|. +...|.||+||+||.|..|.+++++++.+....+.
T Consensus 640 ~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~~r 704 (780)
T 1gm5_A 640 YDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMER 704 (780)
T ss_dssp SSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHH
T ss_pred CeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHHHH
Confidence 47999999999999999999999999996 68888999999999999999999998544443333
No 51
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.42 E-value=6.3e-14 Score=104.04 Aligned_cols=55 Identities=11% Similarity=0.164 Sum_probs=36.1
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEE--EEEEcCc
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVS--HPFLTNH 57 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~--i~~~~~~ 57 (121)
+|++|+++++|||++.+++||+||+||++..|.||+||++|.|+.+.+ +.|++..
T Consensus 168 ~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 168 IVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp EEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred EEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 789999999999999999999999999999999999999999987654 5555543
No 52
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.41 E-value=2.6e-13 Score=115.87 Aligned_cols=65 Identities=22% Similarity=0.424 Sum_probs=57.0
Q ss_pred CcEEEEeccccccCCCCCccEEEE----eCC----CCChhhhhhhheeceeCCC--eeEEEEEEcCc-cHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVIN----YSF----PLTTEDYVHRIGRTGQAGK--KGVSHPFLTNH-NKALAGEL 65 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~----~d~----P~~~~~y~~r~GR~gR~g~--~g~~i~~~~~~-~~~~~~~i 65 (121)
++|||||+++++|+|+|++++||+ ||. |.++.+|+||+|||||.|. .|.+++++++. +...+..+
T Consensus 433 ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 433 LKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp CSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred CcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 579999999999999999999999 999 9999999999999999996 59999999865 44444433
No 53
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.40 E-value=5.6e-14 Score=117.13 Aligned_cols=57 Identities=25% Similarity=0.451 Sum_probs=52.9
Q ss_pred cEEEEeccccccCCCCCccEEEEeCC------------------CCChhhhhhhheeceeCCCeeEEEEEEcCccH
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSF------------------PLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNK 59 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~------------------P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~ 59 (121)
+|||||+++++|||+|+|.+||+|++ |.+..+|+||+|||||. +.|.++.|+++.+.
T Consensus 371 kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 371 KVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred EEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 69999999999999999999999888 99999999999999999 89999999975443
No 54
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.39 E-value=2.7e-13 Score=106.04 Aligned_cols=53 Identities=19% Similarity=0.291 Sum_probs=46.1
Q ss_pred CcEEEEeccccccCCCCCccE-----------------EEEeCCCCChhhhhhhheeceeCCC-eeEEEEEE
Q 038184 1 MYLQVATDIAARGLDIPDVEV-----------------VINYSFPLTTEDYVHRIGRTGQAGK-KGVSHPFL 54 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~-----------------Vi~~d~P~~~~~y~~r~GR~gR~g~-~g~~i~~~ 54 (121)
++|||||+++++|+|+| +.+ ||+++.|.+..+|+||+||+||.|. .|.++++.
T Consensus 218 ~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 218 WDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp CSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred CeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 47999999999999999 654 6889999999999999999999984 55666665
No 55
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.39 E-value=3.1e-13 Score=116.24 Aligned_cols=57 Identities=23% Similarity=0.447 Sum_probs=48.7
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCC--------ChhhhhhhheeceeCC--CeeEEEEEEcCc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPL--------TTEDYVHRIGRTGQAG--KKGVSHPFLTNH 57 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~--------~~~~y~~r~GR~gR~g--~~g~~i~~~~~~ 57 (121)
++|||||+++++|||+|++++||+++.|. ++.+|+||+|||||.| ..|.+++++++.
T Consensus 531 ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 531 LKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp CCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred CeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 57999999999999999999999887744 5667999999999999 789999998765
No 56
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.38 E-value=4.3e-13 Score=110.53 Aligned_cols=54 Identities=30% Similarity=0.487 Sum_probs=48.1
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCC--------------CCChhhhhhhheeceeCCCe---eEEEEEEc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSF--------------PLTTEDYVHRIGRTGQAGKK---GVSHPFLT 55 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~--------------P~~~~~y~~r~GR~gR~g~~---g~~i~~~~ 55 (121)
++|||||+++++|||+ +|++||++++ |.+..+|+||+|||||.|.. |.++.+..
T Consensus 373 ~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~ 443 (677)
T 3rc3_A 373 CKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNH 443 (677)
T ss_dssp CCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESST
T ss_pred eEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEec
Confidence 4799999999999999 9999999999 88999999999999999964 66666544
No 57
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.36 E-value=2.3e-13 Score=106.33 Aligned_cols=56 Identities=23% Similarity=0.420 Sum_probs=49.1
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCe---eEEEEEEcC
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKK---GVSHPFLTN 56 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~---g~~i~~~~~ 56 (121)
++|||||+++++|+|+|++++||+||.|+++..|+||+||+||.|.. ..++.+++.
T Consensus 395 ~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 395 FRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp CSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred CCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 47899999999999999999999999999999999999999999843 345556653
No 58
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.36 E-value=4.8e-13 Score=109.75 Aligned_cols=58 Identities=26% Similarity=0.460 Sum_probs=49.3
Q ss_pred CcEEEEeccccccCCCCCccEEEE----eC-------CCCChhhhhhhheeceeCC--CeeEEEEEEcCcc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVIN----YS-------FPLTTEDYVHRIGRTGQAG--KKGVSHPFLTNHN 58 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~----~d-------~P~~~~~y~~r~GR~gR~g--~~g~~i~~~~~~~ 58 (121)
++|||||+++++|+|+|++.+||+ || .|.+..+|.||+|||||.| ..|.++.++++.+
T Consensus 339 ~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 339 IKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp SCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred CeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 479999999999999999999999 99 8999999999999999988 4899999998665
No 59
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.34 E-value=2.5e-13 Score=107.05 Aligned_cols=55 Identities=13% Similarity=0.092 Sum_probs=49.6
Q ss_pred CcEEEEe-ccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEc
Q 038184 1 MYLQVAT-DIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLT 55 (121)
Q Consensus 1 i~iLV~T-d~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~ 55 (121)
++||||| +++++|+|+|++++||++++|+++..|+||+||+||.|..+..+.+++
T Consensus 398 ~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 398 GIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp SCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred CCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 4699999 999999999999999999999999999999999999998775555544
No 60
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.33 E-value=7.1e-13 Score=108.97 Aligned_cols=58 Identities=24% Similarity=0.365 Sum_probs=53.9
Q ss_pred CcEEEEeccccccCCCCCccEEEE----eC----CCCChhhhhhhheeceeCC--CeeEEEEEEcCcc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVIN----YS----FPLTTEDYVHRIGRTGQAG--KKGVSHPFLTNHN 58 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~----~d----~P~~~~~y~~r~GR~gR~g--~~g~~i~~~~~~~ 58 (121)
++|||||+++++|+|+|++.+||+ || .|.+..+|+||+|||||.| ..|.++.++++.+
T Consensus 321 ~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 321 IKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp SCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSC
T ss_pred CeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCcc
Confidence 579999999999999999999999 87 6999999999999999988 5899999998776
No 61
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.32 E-value=1.1e-12 Score=107.54 Aligned_cols=58 Identities=22% Similarity=0.497 Sum_probs=53.7
Q ss_pred CcEEEEeccccccCCCCCccEEEE----eC---CCCChhhhhhhheeceeCC--CeeEEEEEEcCcc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVIN----YS---FPLTTEDYVHRIGRTGQAG--KKGVSHPFLTNHN 58 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~----~d---~P~~~~~y~~r~GR~gR~g--~~g~~i~~~~~~~ 58 (121)
++|||||+++++|+|+|++.+||+ || .|.+..+|.||+|||||.| ..|.++.++++.+
T Consensus 323 ~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 323 IKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 389 (702)
T ss_dssp CCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred CeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCcc
Confidence 579999999999999999999999 77 7999999999999999988 5899999998766
No 62
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.29 E-value=2.5e-12 Score=110.97 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=53.1
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCC-CCChhhhhhhheeceeCCCeeEEEEEEcCc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSF-PLTTEDYVHRIGRTGQAGKKGVSHPFLTNH 57 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~-P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~ 57 (121)
++|||||+++++|+|+|++++||+++. +.++.+|+||+||+||.|+.|.+++++.+.
T Consensus 865 ~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 865 FNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp CCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 479999999999999999999999998 578999999999999999999999998764
No 63
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.20 E-value=3.7e-12 Score=100.16 Aligned_cols=55 Identities=11% Similarity=0.164 Sum_probs=44.6
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEE--EEEEcCc
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVS--HPFLTNH 57 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~--i~~~~~~ 57 (121)
+|++|+++++|+|++.+++||+||+|+++..|.||+||++|.|+.+.+ +.++...
T Consensus 397 il~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 397 IVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp CEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred EEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 789999999999999999999999999999999999999999976554 4455543
No 64
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.20 E-value=6.9e-12 Score=100.79 Aligned_cols=44 Identities=14% Similarity=0.306 Sum_probs=42.2
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCC
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGK 46 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~ 46 (121)
|||||+++++|+|+|+|++||+|+.|+++..|+||+||+||.+.
T Consensus 502 ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 502 ILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp EEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred EEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 88999999999999999999999999999999999999999764
No 65
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.20 E-value=1.7e-11 Score=104.68 Aligned_cols=54 Identities=28% Similarity=0.399 Sum_probs=45.7
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCC---------ChhhhhhhheeceeCC--CeeEEEEEEc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPL---------TTEDYVHRIGRTGQAG--KKGVSHPFLT 55 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~---------~~~~y~~r~GR~gR~g--~~g~~i~~~~ 55 (121)
++|||||+++++|||+|++. ||++++|. ++.+|+||+|||||.| ..|.++.++.
T Consensus 426 ~kVLvAT~~~a~GIDiP~~~-VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 426 IKVLFATETFAMGLNLPTRT-VIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp CSEEEECTHHHHSCCCCCSE-EEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred CcEEEEchHhhCCCCCCCce-EEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 57999999999999999954 55555555 9999999999999988 6788888873
No 66
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.09 E-value=6.6e-11 Score=105.45 Aligned_cols=65 Identities=14% Similarity=0.189 Sum_probs=55.5
Q ss_pred CcEEEEeccccccCCCCCccEEEE----------eCCCCChhhhhhhheeceeCCC--eeEEEEEEcCccHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVIN----------YSFPLTTEDYVHRIGRTGQAGK--KGVSHPFLTNHNKALAGEL 65 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~----------~d~P~~~~~y~~r~GR~gR~g~--~g~~i~~~~~~~~~~~~~i 65 (121)
++|||||+.+++|+|+|.+.+||. ...|.++.+|+||+|||||.|. .|.+++++.+.+....+++
T Consensus 1240 i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1240 IQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp BCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHH
T ss_pred CeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHH
Confidence 579999999999999999999983 3357789999999999999986 7999999987776655544
No 67
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.04 E-value=2.4e-10 Score=93.31 Aligned_cols=55 Identities=11% Similarity=0.205 Sum_probs=48.9
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCee--EEEEEEcCc
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKG--VSHPFLTNH 57 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g--~~i~~~~~~ 57 (121)
+|++|+++++|||++.+++||+||+||++..|.|++||++|.|+.. .++.|++..
T Consensus 472 ~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 472 FMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp EEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred EEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 7899999999999999999999999999999999999999999765 445556544
No 68
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.97 E-value=2.5e-10 Score=101.77 Aligned_cols=64 Identities=25% Similarity=0.361 Sum_probs=54.2
Q ss_pred CcEEEEeccccccCCCCCccEEEE----eC------CCCChhhhhhhheeceeCC--CeeEEEEEEcCccHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVIN----YS------FPLTTEDYVHRIGRTGQAG--KKGVSHPFLTNHNKALAGE 64 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~----~d------~P~~~~~y~~r~GR~gR~g--~~g~~i~~~~~~~~~~~~~ 64 (121)
++|||||+.+++|+|+|.+..||. || .|-++.+|.||+|||||.| ..|.++.+.++.+......
T Consensus 405 i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ 480 (1724)
T 4f92_B 405 IQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLS 480 (1724)
T ss_dssp CCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHH
T ss_pred CeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHH
Confidence 589999999999999999999985 54 4568999999999999987 4799999998776555443
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.93 E-value=1e-09 Score=91.47 Aligned_cols=56 Identities=11% Similarity=0.261 Sum_probs=49.0
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeE--EEEEEcCc
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGV--SHPFLTNH 57 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~--~i~~~~~~ 57 (121)
.+|++|.+++.|||++.+++||+||+|+++..+.||+||+.|.|+... ++.|++..
T Consensus 627 v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 627 VFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp CEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred EEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 389999999999999999999999999999999999999999997544 44555543
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.85 E-value=1.6e-09 Score=92.83 Aligned_cols=54 Identities=17% Similarity=0.216 Sum_probs=49.6
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCe----eEEEEEEc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKK----GVSHPFLT 55 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~----g~~i~~~~ 55 (121)
++|||+|+++.+|+|+|.+ +|+++|.|.+...|+|++||++|.+.. |.++.|+.
T Consensus 650 i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 650 IDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp SSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred CeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 4799999999999999999 789999999999999999999998754 88888876
No 71
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=96.79 E-value=0.00083 Score=53.66 Aligned_cols=28 Identities=14% Similarity=0.343 Sum_probs=13.2
Q ss_pred EEE--EeccccccCCCCC----ccEEEEeCCCCC
Q 038184 3 LQV--ATDIAARGLDIPD----VEVVINYSFPLT 30 (121)
Q Consensus 3 iLV--~Td~~~~GlDi~~----v~~Vi~~d~P~~ 30 (121)
||+ ||+.+++|||+++ +++||++++|..
T Consensus 431 il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~ 464 (540)
T 2vl7_A 431 LVMLVMRAKESEGVEFREKENLFESLVLAGLPYP 464 (540)
T ss_dssp EEEEEC---------------CEEEEEEESCCCC
T ss_pred EEEEEecCceecceecCCCcccccEEEEECCCCC
Confidence 565 8999999999997 899999999954
No 72
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=95.17 E-value=0.033 Score=47.70 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=33.3
Q ss_pred EEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCcc
Q 038184 21 VVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHN 58 (121)
Q Consensus 21 ~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~ 58 (121)
|||-...+.|..-=-|=.||+||-|..|.+-.|++-+|
T Consensus 662 hVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeD 699 (997)
T 2ipc_A 662 FIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDD 699 (997)
T ss_dssp CEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSS
T ss_pred EEEeccCCchHHHHHHHhcccccCCCCCCeEEEEECCh
Confidence 78888889888777899999999999999999987555
No 73
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=77.17 E-value=4.4 Score=32.80 Aligned_cols=53 Identities=19% Similarity=0.307 Sum_probs=30.4
Q ss_pred EEEEe--ccccccCCCC--CccEEEEeCCCCCh-------------------h--hh--------hhhheeceeCCCeeE
Q 038184 3 LQVAT--DIAARGLDIP--DVEVVINYSFPLTT-------------------E--DY--------VHRIGRTGQAGKKGV 49 (121)
Q Consensus 3 iLV~T--d~~~~GlDi~--~v~~Vi~~d~P~~~-------------------~--~y--------~~r~GR~gR~g~~g~ 49 (121)
||++| ..+.+|||++ .+.+||...+|.-. - .| .|-+||.=|....--
T Consensus 497 vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G 576 (620)
T 4a15_A 497 TIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTG 576 (620)
T ss_dssp EEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCE
T ss_pred EEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceE
Confidence 78887 4999999997 46789999988541 1 12 578899888655433
Q ss_pred EEEEEc
Q 038184 50 SHPFLT 55 (121)
Q Consensus 50 ~i~~~~ 55 (121)
++.+++
T Consensus 577 ~v~llD 582 (620)
T 4a15_A 577 ACVILD 582 (620)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 444544
No 74
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=75.45 E-value=6.1 Score=29.77 Aligned_cols=54 Identities=4% Similarity=-0.008 Sum_probs=35.3
Q ss_pred EEeccccccCC-----CCCccEEEEeCCCCChhh-hhhhheeceeCC----CeeEEEEEEcCcc
Q 038184 5 VATDIAARGLD-----IPDVEVVINYSFPLTTED-YVHRIGRTGQAG----KKGVSHPFLTNHN 58 (121)
Q Consensus 5 V~Td~~~~GlD-----i~~v~~Vi~~d~P~~~~~-y~~r~GR~gR~g----~~g~~i~~~~~~~ 58 (121)
+.|...+-|++ ....+.||.||.-+++.. .+|.+-|+-|.+ +.-.++-+++..-
T Consensus 175 Lltsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 175 LFSSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp EEESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTS
T ss_pred EEECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 34666666675 678899999999999886 478776666652 3445666666443
No 75
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=64.60 E-value=4.2 Score=32.17 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=23.8
Q ss_pred EEEEe--ccccccCCCC-----CccEEEEeCCCCC
Q 038184 3 LQVAT--DIAARGLDIP-----DVEVVINYSFPLT 30 (121)
Q Consensus 3 iLV~T--d~~~~GlDi~-----~v~~Vi~~d~P~~ 30 (121)
||+|| ..+.+|||++ .+.+||...+|.-
T Consensus 440 vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp 474 (551)
T 3crv_A 440 LIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYP 474 (551)
T ss_dssp EEEEESSCCSCCSSCCEETTEESEEEEEEESCCCC
T ss_pred EEEEEecceecccccccccCCcceeEEEEEcCCCC
Confidence 78887 7999999999 4788999888864
No 76
>4ap8_A Molybdopterin synthase catalytic subunit; transferase; 2.78A {Homo sapiens}
Probab=29.30 E-value=57 Score=21.20 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=19.2
Q ss_pred hhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHH
Q 038184 35 VHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLR 70 (121)
Q Consensus 35 ~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~ 70 (121)
+||+|+. ..|..-..+...++.=...++.....+.
T Consensus 85 ~HR~G~l-~~ge~~v~Vav~s~HR~~Af~A~~~~id 119 (135)
T 4ap8_A 85 FHRLGLV-PVSEASIIIAVSSAHRAASLEAVSYAID 119 (135)
T ss_dssp EEECEEE-ETTSEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred hhhcccc-cCCCeEEEEEEEccCHHHHHHHHHHHHH
Confidence 5888877 6666655555555543333433333333
No 77
>1fm0_E Molybdopterin convertin factor, subunit 2; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.41.5.1 PDB: 1fma_E 1nvi_E 3bii_E 1nvj_A
Probab=28.05 E-value=59 Score=21.43 Aligned_cols=42 Identities=19% Similarity=0.210 Sum_probs=22.6
Q ss_pred hhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccCh
Q 038184 35 VHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVP 77 (121)
Q Consensus 35 ~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~ 77 (121)
+||+|+. ..|..-..+...++.=...+...+..+...+..+|
T Consensus 82 ~HR~G~l-~vGe~~v~VaVss~HR~~Af~A~~~~iD~lK~~aP 123 (150)
T 1fm0_E 82 IHRIGEL-WPGDEIVFVGVTSAHRSSAFEAGQFIMDYLKTRAP 123 (150)
T ss_dssp EEECEEE-CTTCEEEEEEEEESSHHHHHHHHHHHHHHHHHHSC
T ss_pred EEEEccc-CCCCEEEEEEEEcCcHHHHHHHHHHHHHHHHhcCC
Confidence 5788876 56655555555555444444444444444444444
No 78
>2wp4_A Molybdopterin-converting factor subunit 2 1; transferase; 2.49A {Mycobacterium tuberculosis}
Probab=26.77 E-value=64 Score=21.21 Aligned_cols=42 Identities=24% Similarity=0.238 Sum_probs=22.2
Q ss_pred hhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccCh
Q 038184 35 VHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVP 77 (121)
Q Consensus 35 ~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~ 77 (121)
+||+|+. ..|..-..+....+.=...++..+..+...+...|
T Consensus 88 ~HR~G~l-~vGe~~v~VaVss~HR~~Af~A~~~~iD~lK~~aP 129 (147)
T 2wp4_A 88 AHRTGEL-QIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVP 129 (147)
T ss_dssp EEECEEE-CTTCEEEEEEEEESSHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEEccc-CCCCeEEEEEEeccCHHHHHHHHHHHHHHHHhhCC
Confidence 5888876 56655555555555444444444444444444444
No 79
>2q5w_E Molybdopterin-converting factor subunit 2; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_A*
Probab=26.24 E-value=66 Score=21.19 Aligned_cols=42 Identities=26% Similarity=0.332 Sum_probs=22.7
Q ss_pred hhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccCh
Q 038184 35 VHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVP 77 (121)
Q Consensus 35 ~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~ 77 (121)
+||+|+. ..|..-..+...++.=...+...+..+...+...|
T Consensus 80 ~HR~G~l-~vGe~~v~VaVss~HR~~Af~A~~~~iD~lK~~aP 121 (149)
T 2q5w_E 80 VHRIGPL-QISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVP 121 (149)
T ss_dssp EEECEEE-CTTCEEEEEEEEESSHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEEccc-CCCCeEEEEEEEcccHHHHHHHHHHHHHHHHhhCC
Confidence 5888876 56655555555555444444444444444444444
No 80
>2omd_A Molybdopterin-converting factor subunit 2; MOAE, coenzyme biosynthesis, structural genomics, NPPSFA; 2.00A {Aquifex aeolicus}
Probab=25.08 E-value=65 Score=21.36 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=24.3
Q ss_pred hhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccCh
Q 038184 35 VHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVP 77 (121)
Q Consensus 35 ~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~ 77 (121)
+||+|+. ..|..-..+...++.=...++..+..+...+...|
T Consensus 86 ~HR~G~l-~vGe~iv~VaVss~HR~~Af~A~~~~iD~lK~~aP 127 (154)
T 2omd_A 86 HHRLGLV-KIGEPSFLVLAVGGHREETFKACRYAVDETKKRVP 127 (154)
T ss_dssp EEECEEE-ETTSCCEEEEEEESSHHHHHHHHHHHHHHHHHHSC
T ss_pred EEEEccc-CCCCeEEEEEEeccCHHHHHHHHHHHHHHHHhhCC
Confidence 6888876 67666666666665444444444444444444444
No 81
>3rpf_A Molybdopterin synthase catalytic subunit; MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=24.77 E-value=75 Score=20.93 Aligned_cols=44 Identities=14% Similarity=0.167 Sum_probs=25.0
Q ss_pred hhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHH
Q 038184 35 VHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDA 79 (121)
Q Consensus 35 ~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 79 (121)
+||+|+. ..|..-..+...++.=...++..+..+...+...|-|
T Consensus 79 ~HR~G~l-~~Ge~~v~VaVss~HR~~Af~A~~~~id~lK~~~PiW 122 (148)
T 3rpf_A 79 AHSLGDV-LIGQSSFLCVSMGKNRKNALELYENFIEDFKHNAPIW 122 (148)
T ss_dssp EEEEEEE-ETTCEEEEEEEEESSHHHHHHHHHHHHHHHHHHSCEE
T ss_pred EEEEccc-CCCCEEEEEEEEcccHHHHHHHHHHHHHHHHhcCCEE
Confidence 5888876 6766655555555554444544444454444455533
No 82
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=20.85 E-value=23 Score=16.51 Aligned_cols=9 Identities=44% Similarity=0.715 Sum_probs=5.9
Q ss_pred hheeceeCC
Q 038184 37 RIGRTGQAG 45 (121)
Q Consensus 37 r~GR~gR~g 45 (121)
..||+||.+
T Consensus 8 ~~~RtGRRN 16 (26)
T 1cmk_I 8 ASGRTGRRN 16 (26)
T ss_pred hcCcccccc
Confidence 357888753
Done!