BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038186
(138 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 34.3 bits (77), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 63 VQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPE 122
+ +P + PVLV+ G+ D TP K + + +V+ V G HC H ++PE
Sbjct: 256 IDRLPDVTAPVLVIAGEHDEATP------KTWQPFVDHIPDVRSHVFPGTSHCTHLEKPE 309
>pdb|2WTM|A Chain A, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|B Chain B, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|C Chain C, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|D Chain D, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTN|A Chain A, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
pdb|2WTN|B Chain B, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
Length = 251
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 72 PVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPW 131
PVL++ GD+D P + V + + N KL+ + G HC +D ELV E + +
Sbjct: 191 PVLIVHGDQDEAVPYEASV-----AFSKQYKNCKLVTIPGDTHC-YDHHLELVTEAVKEF 244
Query: 132 LAE 134
+ E
Sbjct: 245 MLE 247
>pdb|1IMJ|A Chain A, Crystal Structure Of The Human Ccg1/tafii250-interacting
Factor B (cib)
Length = 210
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 68 TIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHEN 127
++ P L+++GD+DP +G+ +L N ++++++G H + D+PE H
Sbjct: 149 SVKTPALIVYGDQDP-------MGQTSFEHLKQLPNHRVLIMKGAGHPCYLDKPEEWHTG 201
Query: 128 MLPWL 132
+L +L
Sbjct: 202 LLDFL 206
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 24/56 (42%)
Query: 30 VEVLIFSTYIACNEEGVLDAFVSIVTGPPGPNPVQLMPTIFIPVLVLWGDKDPFTP 85
+E L Y A E +D P G L+P + P L++ G+KDP P
Sbjct: 156 LEALYGYDYFARTCEKWVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVP 211
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 24/56 (42%)
Query: 30 VEVLIFSTYIACNEEGVLDAFVSIVTGPPGPNPVQLMPTIFIPVLVLWGDKDPFTP 85
+E L Y A E +D P G L+P + P L++ G+KDP P
Sbjct: 156 LEALYGYDYFARTCEKWVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVP 211
>pdb|2OCL|A Chain A, Crystal Structure Of Valacyclovir Hydrolase S122a Mutant
Length = 254
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 24/56 (42%)
Query: 30 VEVLIFSTYIACNEEGVLDAFVSIVTGPPGPNPVQLMPTIFIPVLVLWGDKDPFTP 85
+E L Y A E +D P G L+P + P L++ G+KDP P
Sbjct: 156 LEALYGYDYFARTCEKWVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVP 211
>pdb|1JFR|A Chain A, Crystal Structure Of The Streptomyces Exfoliatus Lipase At
1.9a Resolution: A Model For A Family Of Platelet-
Activating Factor Acetylhydrolases
pdb|1JFR|B Chain B, Crystal Structure Of The Streptomyces Exfoliatus Lipase At
1.9a Resolution: A Model For A Family Of Platelet-
Activating Factor Acetylhydrolases
Length = 262
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 59 GPNPVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHD 118
G N + P + P LV+ D D P+ ++ SLP L L L G H +
Sbjct: 155 GWNTDKTWPELRTPTLVVGADGDTVAPVATHSKPFYESLPGSLDKAYL-ELRGASHFTPN 213
Query: 119 DRPELVHENMLPWL 132
+ + + WL
Sbjct: 214 TSDTTIAKYSISWL 227
>pdb|1A8Q|A Chain A, Bromoperoxidase A1
Length = 274
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 71 IPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRH 114
IP LV+ GD D P+D K +P N +L V EG H
Sbjct: 213 IPTLVVHGDDDQVVPIDATGRKSAQIIP----NAELKVYEGSSH 252
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 66 MPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVH 125
+P I +P L+L G D P++ + +LPS + + +EG H E V+
Sbjct: 213 IPRIDVPALILHGTGDRTLPIENTARVFHKALPS----AEYVEVEGAPHGLLWTHAEEVN 268
Query: 126 ENMLPWLAE 134
+L +LA+
Sbjct: 269 TALLAFLAK 277
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 66 MPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVH 125
+P I +P L+L G D P++ + +LPS + + +EG H E V+
Sbjct: 213 IPRIDVPALILHGTGDRTLPIENTARVFHKALPS----AEYVEVEGAPHGLLWTHAEEVN 268
Query: 126 ENMLPWLAE 134
+L +LA+
Sbjct: 269 TALLAFLAK 277
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 66 MPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVH 125
+P I +P L+L G D P++ + +LPS + + +EG H E V+
Sbjct: 213 IPRIDVPALILHGTGDRTLPIENTARVFHKALPS----AEYVEVEGAPHGLLWTHAEEVN 268
Query: 126 ENMLPWLAE 134
+L +LA+
Sbjct: 269 TALLAFLAK 277
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 72 PVLVLWGDKDPFTPLDGPV 90
PVL++WG +D PLDG +
Sbjct: 232 PVLLIWGREDRVNPLDGAL 250
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 72 PVLVLWGDKDPFTPLDGPV 90
PVL++WG +D PLDG +
Sbjct: 252 PVLLIWGREDRVNPLDGAL 270
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 64 QLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPEL 123
+ +P + +P L+L G D L G Y +K + L + EG H H + PE+
Sbjct: 239 RALPKLTVPFLLLQGSADR---LCDSKGAYLLXELAKSQDKTLKIYEGAYHVLHKELPEV 295
Query: 124 V 124
Sbjct: 296 T 296
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 64 QLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPEL 123
+ +P + +P L+L G D L G Y +K + L + EG H H + PE+
Sbjct: 222 RALPKLTVPFLLLQGSADR---LCDSKGAYLLMELAKSQDKTLKIYEGAYHVLHKELPEV 278
Query: 124 VH 125
+
Sbjct: 279 TN 280
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 26.9 bits (58), Expect = 3.8, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 66 MPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRH 114
+P I +P L+L G D P++ + +LPS + + +EG H
Sbjct: 214 IPRIDVPALILHGTGDRTLPIENTARVFHKALPS----AEYVEVEGAPH 258
>pdb|4DGQ|A Chain A, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|B Chain B, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|C Chain C, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
Length = 280
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 66 MPTIFIPVLVLWGDKDPFTPLDGPVGKYFSS--LPSKL-SNVKLIVLEGVRHCPHDDRPE 122
+ I IPVLV+ GD D P Y S L +KL N KLI +G H +
Sbjct: 216 LKGITIPVLVIHGDDDQVVP-------YADSGVLSAKLVKNGKLITYKGAPHGIPTTHAD 268
Query: 123 LVHENMLPWL 132
V+ ++L +L
Sbjct: 269 KVNADLLEFL 278
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 64 QLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPEL 123
+ +P + +P L+L G D L G Y +K + L + EG H H + PE+
Sbjct: 239 RALPKLTVPFLLLQGSADR---LCDSKGAYLLMELAKSQDKTLKIYEGAYHVLHKELPEV 295
Query: 124 VH 125
+
Sbjct: 296 TN 297
>pdb|1Q0R|A Chain A, Crystal Structure Of Aclacinomycin Methylesterase (Rdmc)
With Bound Product Analogue, 10-
Decarboxymethylaclacinomycin T (Dcmat)
pdb|1Q0Z|A Chain A, Crystal Structure Of Aclacinomycin Methylesterase (rdmc)
With Bound Product Analogue, 10-
Decarboxymethylaclacinomycin A (dcma)
Length = 298
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 58 PGPNPVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHC 115
P P+ + + +P LV+ + DP P P GK+ + L + +L + G+ H
Sbjct: 225 PPPSRAAELREVTVPTLVIQAEHDPIAP--APHGKHLAGL---IPTARLAEIPGMGHA 277
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 64 QLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPEL 123
+ +P + +P L+L G D L G Y +K + L + EG H H + PE+
Sbjct: 240 RALPKLTVPFLLLQGSADR---LCDSKGAYLLMELAKSQDKTLKIYEGAYHVLHKELPEV 296
Query: 124 V 124
Sbjct: 297 T 297
>pdb|3RNF|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sV271A DOUBLE MUTANT
Length = 498
Score = 25.8 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 74 LVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGV 112
+ +W F+ L GP+ Y++ L S+ + K +LE +
Sbjct: 260 VAIWRSWKLFSALTGPIMDYYTPLESRNQSFKEFMLEWI 298
>pdb|1QLW|A Chain A, The Atomic Resolution Structure Of A Novel Bacterial
Esterase
pdb|1QLW|B Chain B, The Atomic Resolution Structure Of A Novel Bacterial
Esterase
pdb|2WKW|A Chain A, Alcaligenes Esterase Complexed With Product Analogue
pdb|2WKW|B Chain B, Alcaligenes Esterase Complexed With Product Analogue
Length = 328
Score = 25.4 bits (54), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Query: 40 ACNEEGVLDAFVSIVTGPPG--PNPVQLMPTIFIPVLVLWGD 79
A N +G+ +IV+ PG P P + P IPVLV++GD
Sbjct: 217 AMNPKGI----TAIVSVEPGECPKPEDVKPLTSIPVLVVFGD 254
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.142 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,510,875
Number of Sequences: 62578
Number of extensions: 186814
Number of successful extensions: 405
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 391
Number of HSP's gapped (non-prelim): 34
length of query: 138
length of database: 14,973,337
effective HSP length: 89
effective length of query: 49
effective length of database: 9,403,895
effective search space: 460790855
effective search space used: 460790855
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)