BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038186
(138 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O05235|YUGF_BACSU Uncharacterized hydrolase YugF OS=Bacillus subtilis (strain 168)
GN=yugF PE=3 SV=1
Length = 273
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 5 WCFRETLGNVLLSIYANKESVDETLVEVLIFSTYIACNEEGVLDAFVSIVTGPPGPNPVQ 64
W +E + LL++ +K +DE +++ +E + A + G +
Sbjct: 154 WLSKEGVMKNLLNVVHDKSLIDEEMID----GYGRPFQDEQIFKAMTRFIRHREGDLEPE 209
Query: 65 LMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELV 124
+ + P L++WG++D P++ +GK L + L N L L H ++RPEL+
Sbjct: 210 QLKKMNKPALLIWGEEDRIVPME--IGK---RLHADLPNSVLYSLGQTGHLVPEERPELI 264
Query: 125 HENMLPWLA 133
E++ ++
Sbjct: 265 SEHIADFIK 273
>sp|Q49418|ESL2_MYCGE Putative esterase/lipase 2 OS=Mycoplasma genitalium (strain ATCC
33530 / G-37 / NCTC 10195) GN=MG327 PE=3 SV=1
Length = 268
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 72 PVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPW 131
P LV+ G D TP V L +K + V++GV H PHD P+L + +L +
Sbjct: 204 PTLVILGANDIVTPTKASV----DYLANKSDKIIFKVIDGVGHSPHDSAPKLFFDYVLEF 259
Query: 132 L 132
L
Sbjct: 260 L 260
>sp|Q5F641|BIOH_NEIG1 Pimelyl-[acyl-carrier protein] methyl ester esterase OS=Neisseria
gonorrhoeae (strain ATCC 700825 / FA 1090) GN=bioH PE=3
SV=1
Length = 258
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 61 NPVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCP 116
+ L+ I +PVL+++G KD TPL +G+Y L L +L+V+E H P
Sbjct: 187 DARHLLDKIDVPVLLVFGGKDAITPLR--MGEY---LHRHLKGSRLVVMEKAAHAP 237
>sp|Q52532|MHPC_PSESP 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate
hydrolase OS=Pseudomonas sp. GN=mhpC PE=3 SV=1
Length = 283
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 47 LDAFVSIVTGPPG-PNPVQLMPTIFIPVLVLWGDKDPFTPLD 87
L FV + G N L+PT+ +P +++WG D F PLD
Sbjct: 200 LTNFVESLKASGGRANYAHLLPTLTMPTMIIWGRDDRFVPLD 241
>sp|Q6DGG1|ABHEB_RAT Alpha/beta hydrolase domain-containing protein 14B OS=Rattus
norvegicus GN=Abhd14b PE=2 SV=1
Length = 210
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 72 PVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPW 131
P L+++GD+DP F L +L N +++V+EG H + D+P+ H +L +
Sbjct: 153 PTLIVYGDQDPMG------SSSFQHL-KQLPNHRVLVMEGAGHPCYLDKPDEWHTGLLDF 205
Query: 132 LAE 134
L E
Sbjct: 206 LQE 208
>sp|Q8VCR7|ABHEB_MOUSE Alpha/beta hydrolase domain-containing protein 14B OS=Mus musculus
GN=Abhd14b PE=2 SV=1
Length = 210
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 68 TIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHEN 127
++ P L+++GD+DP F L +L N +++V+EG H + D+P+ H+
Sbjct: 149 SVKTPALIVYGDQDPMG------SSSFQHL-KQLPNHRVLVMEGAGHPCYLDKPDEWHKG 201
Query: 128 MLPWL 132
+L +L
Sbjct: 202 LLDFL 206
>sp|Q96IU4|ABHEB_HUMAN Alpha/beta hydrolase domain-containing protein 14B OS=Homo sapiens
GN=ABHD14B PE=1 SV=1
Length = 210
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 68 TIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHEN 127
++ P L+++GD+DP +G+ +L N ++++++G H + D+PE H
Sbjct: 149 SVKTPALIVYGDQDP-------MGQTSFEHLKQLPNHRVLIMKGAGHPCYLDKPEEWHTG 201
Query: 128 MLPWL 132
+L +L
Sbjct: 202 LLDFL 206
>sp|E6MWF8|BIOH_NEIMH Pimelyl-[acyl-carrier protein] methyl ester esterase OS=Neisseria
meningitidis serogroup B / serotype 15 (strain H44/76)
GN=bioH PE=1 SV=2
Length = 258
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 64 QLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCP 116
L+ I +PVL+++G KD TP +G+Y L +L +L+V+E H P
Sbjct: 190 HLLDKIDVPVLLVFGGKDAITPPR--MGEY---LHRRLKGSRLVVMEKAAHAP 237
>sp|Q9K197|BIOH_NEIMB Pimelyl-[acyl-carrier protein] methyl ester esterase OS=Neisseria
meningitidis serogroup B (strain MC58) GN=bioH PE=3 SV=2
Length = 258
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 64 QLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCP 116
L+ I +PVL+++G KD TP +G+Y L +L +L+V+E H P
Sbjct: 190 HLLDKIDVPVLLVFGGKDAITPPR--MGEY---LHRRLKGSRLVVMEKAAHAP 237
>sp|Q5R816|ABHEB_PONAB Alpha/beta hydrolase domain-containing protein 14B OS=Pongo abelii
GN=ABHD14B PE=2 SV=1
Length = 210
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 68 TIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHEN 127
++ P L+++GD+DP +G+ +L N ++++++G H + D+PE H
Sbjct: 149 SVKTPALIVYGDQDP-------MGQTSFEHLKQLPNHRVLIMKGAGHPCYLDKPEEWHTG 201
Query: 128 MLPWL 132
+L +L
Sbjct: 202 LLDFL 206
>sp|A7YY28|ABHEB_BOVIN Alpha/beta hydrolase domain-containing protein 14B OS=Bos taurus
GN=ABHD14B PE=2 SV=1
Length = 210
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 73 VLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWL 132
VL+++GD+DP F L +L N +++V+EG H + D+PE H +L +L
Sbjct: 154 VLIVYGDQDPMGQTS------FEHL-KQLPNHRVLVMEGAGHPCYLDKPEEWHTGLLDFL 206
>sp|Q9JSN0|BIOH_NEIMA Pimelyl-[acyl-carrier protein] methyl ester esterase OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=bioH PE=3 SV=1
Length = 312
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 64 QLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCP 116
L+ I +PVL+++G KD TP +G+Y L +L +L+V+E H P
Sbjct: 190 HLLDKIDVPVLLVFGGKDAITPPR--MGEY---LHRRLKGSRLVVMEKAAHAP 237
>sp|Q1LV46|ABHEA_DANRE Alpha/beta hydrolase domain-containing protein 14A OS=Danio rerio
GN=abhd14a PE=2 SV=1
Length = 270
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 47 LDAFVSIV-TGPPGPNPVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVK 105
L FV I G G P Q I P L+++G+ D T L K LP N
Sbjct: 187 LHGFVPIAPVGTRGITPQQYH-DIQTPTLIIYGELD--TNLGAQSHKNLIQLP----NHT 239
Query: 106 LIVLEGVRHCPHDDRPELVHENMLPWLAE 134
++ L G RH + D+P H +L +L++
Sbjct: 240 VVKLAGARHACYMDKPREFHRALLDFLSK 268
>sp|P94438|YFIJ_BACSU Sensor histidine kinase YfiJ OS=Bacillus subtilis (strain 168)
GN=yfiJ PE=3 SV=1
Length = 400
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 8 RETLGNVLLSIYANKESVDETLVEVLIFSTYIACNEEGVLDAFVSIVTGPPGPNPVQLMP 67
RE L +V LS+ + D +L+E L T C GV F V+G P P+ L P
Sbjct: 241 REALDDVRLSVRTLQTENDPSLIESLKQLTEDFCKNAGVTTEFA--VSGDPAIIPLSLHP 298
Query: 68 TIFIPV 73
T+ V
Sbjct: 299 TLIRTV 304
>sp|A1KRU9|BIOH_NEIMF Pimelyl-[acyl-carrier protein] methyl ester esterase OS=Neisseria
meningitidis serogroup C / serotype 2a (strain ATCC
700532 / FAM18) GN=bioH PE=3 SV=1
Length = 256
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 64 QLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCP 116
L+ I +PVL+++G KD TP +G+Y L L +L+V+E H P
Sbjct: 190 HLLDKIDVPVLLVFGGKDAITPPR--MGEY---LHRHLKGSRLVVMEKAAHAP 237
>sp|Q5NXQ3|PANB_AROAE 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Aromatoleum
aromaticum (strain EbN1) GN=panB PE=3 SV=1
Length = 271
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 9/93 (9%)
Query: 46 VLDAFVSIVTGPPGPNPVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVK 105
V D+ ++V G PV L I+ V+ G PF D P G Y S + N
Sbjct: 49 VGDSLGNVVQGQKSTLPVTLEHMIYHTECVVRGSTRPFIVTDMPFGAYHESPSQAMHNAA 108
Query: 106 LIVLEGVRHCPHDDRPELVHENMLPWLAETFNF 138
++ G ++V ++AET F
Sbjct: 109 SLLAAGA---------QMVKLEGGTFMAETVRF 132
>sp|Q8R2Y0|ABHD6_MOUSE Monoacylglycerol lipase ABHD6 OS=Mus musculus GN=Abhd6 PE=2 SV=1
Length = 336
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 50 FVSIVTGPPGPNPVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVL 109
F+ IV + + M I +P ++WG +D + G L +SN ++ VL
Sbjct: 247 FLEIVNEKSRYSLHENMDKIKVPTQIIWGKQDQVLDVSGA-----DILAKSISNSQVEVL 301
Query: 110 EGVRHCPHDDRPELVHENMLPWLAETFN 137
E H +RP + ++ +LA N
Sbjct: 302 ENCGHSVVMERPRKTAKLIVDFLASVHN 329
>sp|Q55921|PRXC_SYNY3 Putative non-heme chloroperoxidase OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr0314 PE=3 SV=1
Length = 276
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 66 MPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHC 115
+P I +P L++ GD D PL+ + LP ++ N +L ++ G H
Sbjct: 213 LPRIDVPTLIIHGDADRILPLESTAAR----LPKRIKNSQLEIIPGGPHA 258
>sp|Q99JW2|ACY1_MOUSE Aminoacylase-1 OS=Mus musculus GN=Acy1 PE=1 SV=1
Length = 408
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 11/112 (9%)
Query: 28 TLVEVLIFSTYIACNEEGVLDAFVSIVTGPPGPNPVQLMPTIF-------IPVLVLWGDK 80
T +E ++C + V+ FV V PG NP +P+I +PV
Sbjct: 36 TFLEERARQLGLSCQKIEVVPGFVITVLTWPGTNPS--LPSILLNSHTDVVPVFKEHWHH 93
Query: 81 DPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDR--PELVHENMLP 130
DPF G ++ + +V + LE VR + P +H +P
Sbjct: 94 DPFEAFKDSEGYIYARGSQDMKSVSIQYLEAVRRLKSEGHRFPRTIHMTFVP 145
>sp|B2JQW2|MHPC_BURP8 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate
hydrolase OS=Burkholderia phymatum (strain DSM 17167 /
STM815) GN=mhpC PE=3 SV=1
Length = 288
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 47 LDAFVSIVTGPPG--PNPVQLMPTIFIPVLVLWGDKDPFTPLD 87
L+ FV +T P P+ + I P LV+WG D F PLD
Sbjct: 204 LENFVKSLTANPKQFPDYGHRLNEIKAPALVIWGRDDRFVPLD 246
>sp|A4JPX5|MHPC_BURVG 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate
hydrolase OS=Burkholderia vietnamiensis (strain G4 / LMG
22486) GN=mhpC PE=3 SV=1
Length = 288
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 47 LDAFVSIVTGPPG--PNPVQLMPTIFIPVLVLWGDKDPFTPLD 87
L+ FV +T P P+ + I P LV+WG D F P+D
Sbjct: 204 LENFVKSLTANPKQFPDYGHRLSEIKAPALVIWGRDDRFVPMD 246
>sp|Q5XI64|ABHD6_RAT Monoacylglycerol lipase ABHD6 OS=Rattus norvegicus GN=Abhd6 PE=1
SV=1
Length = 337
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 50 FVSIVTGPPGPNPVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVL 109
F+ IV+ + + M I +P ++WG +D + G L ++N ++ VL
Sbjct: 247 FLEIVSEKSRYSLHENMDKIKVPTQIIWGKQDQVLDVSGA-----DILAKSITNSQVEVL 301
Query: 110 EGVRHCPHDDRPELVHENMLPWLAETFN 137
E H +RP + ++ +LA N
Sbjct: 302 ENCGHSVVMERPRKTAKLVVDFLASVHN 329
>sp|P81650|BGAL_PSEHA Beta-galactosidase OS=Pseudoalteromonas haloplanktis GN=lacZ PE=1
SV=2
Length = 1039
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 82 PFTPLDGPVGKY---FSSLPSKLSNVKLIVLEGVRHCPH 117
PF P D P G Y F+ P +L+ I+ EGV H
Sbjct: 113 PFVPSDNPTGCYRTEFTITPEQLTQRNHIIFEGVNSAFH 151
>sp|Q8R164|BPHL_MOUSE Valacyclovir hydrolase OS=Mus musculus GN=Bphl PE=2 SV=1
Length = 291
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 30 VEVLIFSTYIACNEEGVLDAFVSIVTGPPGPNPVQLMPTIFIPVLVLWGDKDPFTP 85
+E L Y+A E +D P G L+P + P L++ G+KDP P
Sbjct: 193 LEALYGYDYLAKTCEDWVDGISQFKQLPEGNICRHLLPLVQCPTLIVHGEKDPLVP 248
>sp|Q15X48|RPOA_PSEA6 DNA-directed RNA polymerase subunit alpha OS=Pseudoalteromonas
atlantica (strain T6c / ATCC BAA-1087) GN=rpoA PE=3 SV=1
Length = 329
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 19 YANKESVDETLVEVLIFSTYIACNEEGVLDAFVSIVTGPPGP 60
Y+ KE V E ++E+L+ +A EG +A +++V GP
Sbjct: 68 YSTKEGVQEDVIEILLNLKGLAVRLEGKTEATLTLVKSGAGP 109
>sp|Q9H6B9|EPHX3_HUMAN Epoxide hydrolase 3 OS=Homo sapiens GN=EPHX3 PE=2 SV=1
Length = 360
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 19/116 (16%)
Query: 36 STYIACNEEGVLDAFVSIVTGPPG-PNPVQLMPTIF-----------IPVLVLWGDKDPF 83
T I C L+AF+ + P G P+ +F P L+LWG+KD +
Sbjct: 250 KTGIPCLTPSELEAFLYNFSQPGGLTGPLNYYRNLFRNFPLEPQELTTPTLLLWGEKDTY 309
Query: 84 TPLD--GPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLAETFN 137
L +G F +P +L + +L G+ H P+ +H+ M +L + +
Sbjct: 310 LELGLVEAIGSRF--VPGRL---EAHILPGIGHWIPQSNPQEMHQYMWAFLQDLLD 360
>sp|Q8IUS5|EPHX4_HUMAN Epoxide hydrolase 4 OS=Homo sapiens GN=EPHX4 PE=2 SV=2
Length = 362
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 18/101 (17%)
Query: 47 LDAFVSIVTGPPG-PNPVQLMPTIF-----------IPVLVLWGDKDPFTPLD-GPVGKY 93
L+A++ + + P P+ IF P L+LWG+ D F ++ V K
Sbjct: 261 LEAYIYVFSQPGALSGPINHYRNIFSCLPLKHHMVTTPTLLLWGENDAFMEVEMAEVTKI 320
Query: 94 FSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLAE 134
+ + +L +L H D+P++V++ + +L E
Sbjct: 321 YVK-----NYFRLTILSEASHWLQQDQPDIVNKLIWTFLKE 356
>sp|P95862|DLHH_SULSO Putative carboxymethylenebutenolidase OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
GN=SSO2087 PE=3 SV=1
Length = 257
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 60 PNPVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDD 119
P P++ + I P+L L+ +DP P+D + S++ +++L + G H +D
Sbjct: 174 PQPLEAIQKIKGPILGLYAGEDP--PIDAGLPDLISAIIKYKKDLELKIYPGAYHAFFND 231
Query: 120 R 120
R
Sbjct: 232 R 232
>sp|C4L7V5|RPOA_TOLAT DNA-directed RNA polymerase subunit alpha OS=Tolumonas auensis
(strain DSM 9187 / TA4) GN=rpoA PE=3 SV=1
Length = 329
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 19 YANKESVDETLVEVLIFSTYIACNEEGVLDAFVSIVTGPPGP 60
Y++KE V E ++E+L+ IA EG + +S+ GP
Sbjct: 68 YSSKEGVQEDILEILLNLKGIAVKLEGKDEVILSLTKSGAGP 109
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.142 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,866,046
Number of Sequences: 539616
Number of extensions: 2450116
Number of successful extensions: 4551
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 4539
Number of HSP's gapped (non-prelim): 36
length of query: 138
length of database: 191,569,459
effective HSP length: 103
effective length of query: 35
effective length of database: 135,989,011
effective search space: 4759615385
effective search space used: 4759615385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)