Query 038186
Match_columns 138
No_of_seqs 151 out of 2037
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 08:27:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038186.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038186hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02679 hydrolase, alpha/beta 99.8 2.1E-18 4.6E-23 120.5 12.3 122 11-136 237-358 (360)
2 PLN02824 hydrolase, alpha/beta 99.7 7.1E-17 1.5E-21 109.8 9.4 108 18-134 186-293 (294)
3 PLN02578 hydrolase 99.6 9.7E-15 2.1E-19 101.9 9.9 108 16-133 242-353 (354)
4 TIGR03343 biphenyl_bphD 2-hydr 99.6 3.3E-14 7.2E-19 96.0 9.5 67 62-133 215-281 (282)
5 PRK10349 carboxylesterase BioH 99.5 4.5E-15 9.8E-20 99.1 4.2 69 61-134 187-255 (256)
6 PLN02965 Probable pheophorbida 99.5 7.9E-15 1.7E-19 98.0 5.1 67 65-136 188-254 (255)
7 KOG1454 Predicted hydrolase/ac 99.5 6.1E-15 1.3E-19 101.6 4.7 71 61-136 254-325 (326)
8 PRK03592 haloalkane dehalogena 99.5 5.7E-14 1.2E-18 95.6 6.9 69 64-136 222-290 (295)
9 TIGR01738 bioH putative pimelo 99.5 6.2E-14 1.3E-18 91.9 4.5 67 61-132 179-245 (245)
10 PRK06489 hypothetical protein; 99.5 1.4E-13 3.1E-18 96.3 6.0 73 60-136 282-358 (360)
11 PRK07581 hypothetical protein; 99.4 7.2E-14 1.6E-18 97.0 4.2 71 61-136 266-337 (339)
12 PRK03204 haloalkane dehalogena 99.4 1.5E-13 3.3E-18 93.4 5.0 60 70-133 227-286 (286)
13 TIGR02240 PHA_depoly_arom poly 99.4 1.6E-13 3.4E-18 92.7 4.7 67 64-136 201-267 (276)
14 PRK00870 haloalkane dehalogena 99.4 2.5E-13 5.5E-18 92.8 5.6 66 64-135 233-301 (302)
15 KOG4178 Soluble epoxide hydrol 99.4 7.9E-13 1.7E-17 89.4 7.7 104 25-135 216-320 (322)
16 TIGR03056 bchO_mg_che_rel puta 99.4 9.7E-13 2.1E-17 88.4 7.5 66 63-133 213-278 (278)
17 PRK10673 acyl-CoA esterase; Pr 99.4 6.1E-13 1.3E-17 88.6 5.7 66 64-134 189-254 (255)
18 PLN03087 BODYGUARD 1 domain co 99.4 5.7E-13 1.2E-17 95.8 4.9 63 67-134 415-478 (481)
19 TIGR03611 RutD pyrimidine util 99.4 6.8E-13 1.5E-17 87.8 4.9 68 62-134 190-257 (257)
20 PRK00175 metX homoserine O-ace 99.4 1.6E-13 3.6E-18 96.6 2.1 70 62-136 301-375 (379)
21 PRK08775 homoserine O-acetyltr 99.4 3E-13 6.4E-18 94.1 3.2 67 65-136 272-340 (343)
22 TIGR01392 homoserO_Ac_trn homo 99.3 2.2E-13 4.7E-18 95.1 0.9 67 62-133 280-351 (351)
23 PLN02385 hydrolase; alpha/beta 99.3 2.1E-12 4.6E-17 90.1 5.1 69 62-135 271-345 (349)
24 PLN03084 alpha/beta hydrolase 99.3 2.8E-12 6.1E-17 90.3 5.4 61 67-133 322-382 (383)
25 TIGR02427 protocat_pcaD 3-oxoa 99.3 5E-12 1.1E-16 83.1 5.7 67 62-133 185-251 (251)
26 KOG2984 Predicted hydrolase [G 99.3 1.4E-11 3.1E-16 78.2 7.2 70 61-135 207-276 (277)
27 PRK14875 acetoin dehydrogenase 99.3 2.4E-11 5.3E-16 85.1 9.0 65 62-134 306-370 (371)
28 PRK11126 2-succinyl-6-hydroxy- 99.3 4.2E-12 9E-17 84.0 4.5 63 61-134 179-241 (242)
29 PLN02894 hydrolase, alpha/beta 99.3 4.9E-11 1.1E-15 84.7 10.0 69 61-135 316-385 (402)
30 TIGR01250 pro_imino_pep_2 prol 99.3 5.7E-12 1.2E-16 84.5 4.7 65 63-133 224-288 (288)
31 PHA02857 monoglyceride lipase; 99.2 1.4E-11 3.1E-16 83.1 5.7 68 63-135 202-273 (276)
32 PRK06765 homoserine O-acetyltr 99.2 8.4E-12 1.8E-16 88.1 4.6 69 61-134 314-387 (389)
33 KOG2382 Predicted alpha/beta h 99.2 2.6E-11 5.6E-16 82.1 5.6 65 67-136 250-314 (315)
34 PLN02511 hydrolase 99.2 3.2E-11 7E-16 85.3 5.5 70 62-135 290-365 (388)
35 TIGR03695 menH_SHCHC 2-succiny 99.2 3.4E-11 7.3E-16 78.9 4.8 66 62-133 186-251 (251)
36 PLN02298 hydrolase, alpha/beta 99.1 4.2E-11 9.1E-16 82.9 4.0 68 63-135 244-317 (330)
37 PLN02980 2-oxoglutarate decarb 99.1 4.2E-11 9.2E-16 96.9 3.5 71 60-136 1558-1640(1655)
38 PRK10749 lysophospholipase L2; 99.1 5.4E-11 1.2E-15 82.4 3.6 68 63-135 252-329 (330)
39 PLN02211 methyl indole-3-aceta 99.1 2.8E-10 6.1E-15 77.0 6.0 64 66-135 206-270 (273)
40 KOG4409 Predicted hydrolase/ac 99.0 1.3E-09 2.8E-14 74.6 7.8 104 24-135 255-364 (365)
41 PLN02652 hydrolase; alpha/beta 99.0 3.2E-10 6.9E-15 80.4 4.8 68 63-135 317-387 (395)
42 PF12697 Abhydrolase_6: Alpha/ 99.0 8.2E-11 1.8E-15 76.1 0.4 61 62-127 168-228 (228)
43 PRK05855 short chain dehydroge 99.0 8.6E-10 1.9E-14 81.3 5.5 64 66-135 229-292 (582)
44 PF00561 Abhydrolase_1: alpha/ 99.0 1.1E-10 2.4E-15 76.2 0.7 62 63-129 168-229 (230)
45 TIGR01249 pro_imino_pep_1 prol 98.8 4.9E-09 1.1E-13 72.0 4.4 62 64-133 241-303 (306)
46 PRK10985 putative hydrolase; P 98.8 8.9E-09 1.9E-13 71.3 5.1 68 63-135 248-320 (324)
47 PRK05077 frsA fermentation/res 98.8 1.4E-08 3.1E-13 72.5 5.5 61 67-135 352-412 (414)
48 PRK07868 acyl-CoA synthetase; 98.7 4.7E-08 1E-12 76.6 7.9 66 65-135 292-361 (994)
49 PF08386 Abhydrolase_4: TAP-li 98.7 4.6E-08 9.9E-13 56.8 4.4 62 68-134 32-93 (103)
50 TIGR01607 PST-A Plasmodium sub 98.7 4.7E-08 1E-12 68.0 5.1 64 65-133 263-331 (332)
51 COG0596 MhpC Predicted hydrola 98.6 7.2E-08 1.6E-12 63.1 5.2 66 63-133 214-280 (282)
52 TIGR03100 hydr1_PEP hydrolase, 98.6 2E-08 4.3E-13 68.1 2.4 70 64-134 201-274 (274)
53 PF00326 Peptidase_S9: Prolyl 98.6 3.3E-08 7.2E-13 64.5 3.3 66 69-135 143-209 (213)
54 COG1647 Esterase/lipase [Gener 98.6 2.1E-07 4.5E-12 60.2 6.1 100 23-134 141-243 (243)
55 PLN02872 triacylglycerol lipas 98.6 1.1E-07 2.3E-12 67.6 5.0 66 65-135 318-389 (395)
56 TIGR01838 PHA_synth_I poly(R)- 98.5 6.4E-08 1.4E-12 70.9 2.7 56 62-122 407-462 (532)
57 COG1506 DAP2 Dipeptidyl aminop 98.4 1.2E-06 2.5E-11 65.8 6.1 70 65-135 546-616 (620)
58 COG2267 PldB Lysophospholipase 98.3 8.3E-06 1.8E-10 56.1 8.8 71 62-135 220-294 (298)
59 COG3208 GrsT Predicted thioest 98.3 3.3E-06 7.2E-11 55.6 6.2 61 67-133 173-234 (244)
60 PRK11460 putative hydrolase; P 98.3 1.4E-06 3.1E-11 57.7 4.4 65 68-133 146-210 (232)
61 PRK10566 esterase; Provisional 98.3 1.3E-06 2.8E-11 58.1 4.2 67 64-135 179-248 (249)
62 TIGR01836 PHA_synth_III_C poly 98.3 7.7E-07 1.7E-11 62.3 3.0 64 65-134 281-349 (350)
63 PRK13604 luxD acyl transferase 98.2 1.9E-06 4.1E-11 59.0 4.2 61 64-134 196-258 (307)
64 KOG1552 Predicted alpha/beta h 98.2 4.1E-06 8.8E-11 55.5 5.4 68 63-136 185-253 (258)
65 KOG2551 Phospholipase/carboxyh 98.1 8.3E-06 1.8E-10 52.9 5.5 61 66-134 159-219 (230)
66 KOG1455 Lysophospholipase [Lip 98.0 3.2E-06 7E-11 57.2 2.4 69 61-134 237-311 (313)
67 PRK11071 esterase YqiA; Provis 98.0 7.8E-06 1.7E-10 52.6 3.6 55 69-133 135-189 (190)
68 PF02230 Abhydrolase_2: Phosph 98.0 5.7E-06 1.2E-10 54.2 2.7 60 70-134 155-214 (216)
69 PF08840 BAAT_C: BAAT / Acyl-C 97.9 3.4E-06 7.3E-11 55.3 1.2 53 65-117 110-164 (213)
70 PF01738 DLH: Dienelactone hyd 97.9 2E-05 4.3E-10 51.6 4.3 68 66-134 141-216 (218)
71 COG0429 Predicted hydrolase of 97.9 3.9E-05 8.4E-10 52.8 5.7 68 63-135 267-340 (345)
72 KOG4667 Predicted esterase [Li 97.9 1.5E-05 3.3E-10 51.7 3.6 54 63-121 190-245 (269)
73 KOG2931 Differentiation-relate 97.9 0.00023 5E-09 48.3 9.2 60 68-134 244-305 (326)
74 PF03096 Ndr: Ndr family; Int 97.8 3.6E-05 7.8E-10 52.1 4.4 69 59-134 208-278 (283)
75 PF12695 Abhydrolase_5: Alpha/ 97.8 4.7E-06 1E-10 50.7 0.0 48 63-115 97-145 (145)
76 PLN02442 S-formylglutathione h 97.7 7.4E-05 1.6E-09 51.0 4.4 51 67-117 214-264 (283)
77 COG2021 MET2 Homoserine acetyl 97.6 0.00018 3.8E-09 50.3 5.6 68 62-134 298-367 (368)
78 COG0400 Predicted esterase [Ge 97.6 9.2E-05 2E-09 48.3 3.3 59 70-134 146-204 (207)
79 KOG4391 Predicted alpha/beta h 97.5 0.00014 3.1E-09 47.5 4.0 66 64-135 215-282 (300)
80 PF10142 PhoPQ_related: PhoPQ- 97.5 0.00072 1.6E-08 47.8 7.7 62 66-135 258-320 (367)
81 PTZ00472 serine carboxypeptida 97.5 0.00019 4.1E-09 52.3 4.7 64 70-134 364-458 (462)
82 PF03959 FSH1: Serine hydrolas 97.3 3E-05 6.6E-10 50.7 -0.9 50 66-121 157-207 (212)
83 COG1073 Hydrolases of the alph 97.3 0.00064 1.4E-08 45.9 5.4 69 62-135 223-297 (299)
84 COG2945 Predicted hydrolase of 97.3 0.00042 9.1E-09 44.4 3.9 62 65-133 144-205 (210)
85 PF08538 DUF1749: Protein of u 97.3 0.00011 2.4E-09 50.3 1.1 72 61-132 223-302 (303)
86 PF00450 Peptidase_S10: Serine 97.2 0.00026 5.7E-09 50.6 2.6 63 70-133 330-414 (415)
87 KOG3043 Predicted hydrolase re 97.0 0.0022 4.9E-08 42.0 5.3 70 64-134 158-239 (242)
88 TIGR01849 PHB_depoly_PhaZ poly 97.0 0.00045 9.7E-09 49.4 2.2 65 65-134 332-405 (406)
89 KOG1838 Alpha/beta hydrolase [ 96.9 0.0041 8.9E-08 44.4 5.9 69 62-134 314-387 (409)
90 PF06821 Ser_hydrolase: Serine 96.8 0.00043 9.3E-09 43.9 0.8 47 68-120 112-158 (171)
91 COG0412 Dienelactone hydrolase 96.8 0.009 1.9E-07 39.9 6.9 69 66-135 154-233 (236)
92 KOG2564 Predicted acetyltransf 96.7 0.0032 6.9E-08 42.8 4.4 63 66-136 266-328 (343)
93 PRK05371 x-prolyl-dipeptidyl a 96.7 0.0048 1E-07 47.9 5.6 71 62-134 447-518 (767)
94 PLN02213 sinapoylglucose-malat 96.7 0.0056 1.2E-07 42.7 5.4 63 70-134 233-316 (319)
95 COG3571 Predicted hydrolase of 96.7 0.0035 7.5E-08 39.3 3.9 67 63-135 135-211 (213)
96 PRK10162 acetyl esterase; Prov 96.6 0.0048 1E-07 42.9 5.0 62 71-135 249-315 (318)
97 PF05705 DUF829: Eukaryotic pr 96.6 0.0041 8.9E-08 41.4 4.3 64 68-132 176-240 (240)
98 PLN02209 serine carboxypeptida 96.4 0.011 2.5E-07 43.0 6.0 63 70-134 351-434 (437)
99 KOG1282 Serine carboxypeptidas 96.4 0.0061 1.3E-07 44.4 4.5 64 71-135 364-448 (454)
100 PF09752 DUF2048: Uncharacteri 96.4 0.0056 1.2E-07 42.9 4.1 57 71-133 290-347 (348)
101 PRK10115 protease 2; Provision 96.4 0.012 2.6E-07 45.3 6.1 52 66-118 601-656 (686)
102 PLN03016 sinapoylglucose-malat 96.4 0.013 2.8E-07 42.6 5.9 64 70-135 347-431 (433)
103 TIGR02821 fghA_ester_D S-formy 96.3 0.016 3.5E-07 39.4 6.0 48 69-117 210-258 (275)
104 PF05448 AXE1: Acetyl xylan es 96.1 0.0037 7.9E-08 43.6 1.8 65 61-134 253-319 (320)
105 TIGR01839 PHA_synth_II poly(R) 96.0 0.0058 1.2E-07 45.5 2.7 47 64-116 435-482 (560)
106 PF03583 LIP: Secretory lipase 95.9 0.022 4.7E-07 39.3 5.1 64 68-132 217-282 (290)
107 COG3243 PhaC Poly(3-hydroxyalk 95.7 0.0076 1.7E-07 43.2 2.3 49 64-118 324-373 (445)
108 PF05728 UPF0227: Uncharacteri 95.5 0.042 9.2E-07 35.4 4.9 54 70-133 134-187 (187)
109 KOG2565 Predicted hydrolases o 95.2 0.02 4.4E-07 40.6 2.8 91 37-135 372-463 (469)
110 PF07859 Abhydrolase_3: alpha/ 94.9 0.0065 1.4E-07 39.4 -0.1 44 71-117 167-210 (211)
111 PF07519 Tannase: Tannase and 94.9 0.078 1.7E-06 39.1 5.3 64 70-134 353-426 (474)
112 KOG1551 Uncharacterized conser 94.9 0.1 2.3E-06 35.5 5.4 58 73-136 309-367 (371)
113 PF06057 VirJ: Bacterial virul 94.8 0.13 2.9E-06 33.2 5.4 60 62-133 130-190 (192)
114 KOG3253 Predicted alpha/beta h 94.5 0.12 2.6E-06 39.1 5.3 51 63-118 297-348 (784)
115 PF06850 PHB_depo_C: PHB de-po 94.3 0.058 1.3E-06 34.9 3.0 63 70-134 134-201 (202)
116 PF05576 Peptidase_S37: PS-10 94.1 0.17 3.6E-06 36.6 5.2 56 71-133 352-412 (448)
117 PLN00021 chlorophyllase 93.8 0.45 9.8E-06 33.2 7.0 51 68-121 187-246 (313)
118 KOG1515 Arylacetamide deacetyl 93.2 0.097 2.1E-06 36.9 2.9 61 71-134 269-334 (336)
119 COG0657 Aes Esterase/lipase [L 92.7 0.23 5E-06 34.4 4.2 46 70-118 245-290 (312)
120 KOG2112 Lysophospholipase [Lip 92.7 0.13 2.9E-06 33.5 2.7 60 70-134 144-203 (206)
121 COG3458 Acetyl esterase (deace 92.5 0.39 8.5E-06 32.9 4.8 67 61-135 250-317 (321)
122 COG3545 Predicted esterase of 92.4 0.26 5.5E-06 31.4 3.7 63 67-135 114-179 (181)
123 COG4188 Predicted dienelactone 92.4 0.2 4.3E-06 35.6 3.5 58 63-124 244-303 (365)
124 KOG2100 Dipeptidyl aminopeptid 92.3 0.52 1.1E-05 37.0 5.9 69 65-134 676-746 (755)
125 COG4287 PqaA PhoPQ-activated p 91.9 1.4 3.1E-05 31.7 7.1 65 63-135 322-387 (507)
126 KOG2624 Triglyceride lipase-ch 91.6 0.86 1.9E-05 33.1 6.0 67 64-135 326-398 (403)
127 PF11339 DUF3141: Protein of u 91.5 0.48 1E-05 35.4 4.7 27 63-89 290-316 (581)
128 KOG3975 Uncharacterized conser 91.1 0.48 1E-05 32.1 4.0 60 68-132 240-300 (301)
129 PF06500 DUF1100: Alpha/beta h 91.0 0.15 3.4E-06 36.8 1.8 61 67-135 349-409 (411)
130 PF06342 DUF1057: Alpha/beta h 90.8 1 2.2E-05 31.1 5.4 69 63-132 205-296 (297)
131 COG2939 Carboxypeptidase C (ca 90.6 0.85 1.8E-05 33.8 5.3 63 71-134 426-490 (498)
132 COG4757 Predicted alpha/beta h 90.2 0.12 2.5E-06 34.6 0.6 66 62-132 208-280 (281)
133 KOG4627 Kynurenine formamidase 89.5 0.2 4.3E-06 33.0 1.2 63 65-132 202-268 (270)
134 PF02273 Acyl_transf_2: Acyl t 88.7 0.36 7.9E-06 32.6 2.0 52 64-121 189-242 (294)
135 PF00975 Thioesterase: Thioest 88.0 0.91 2E-05 29.6 3.7 60 70-132 168-229 (229)
136 TIGR01840 esterase_phb esteras 83.0 1.3 2.8E-05 28.8 2.6 20 70-89 168-187 (212)
137 PF05577 Peptidase_S28: Serine 81.3 2.3 4.9E-05 31.1 3.5 38 71-116 377-414 (434)
138 PF02129 Peptidase_S15: X-Pro 80.6 1.5 3.3E-05 29.8 2.3 49 64-115 222-271 (272)
139 smart00824 PKS_TE Thioesterase 80.6 4.3 9.3E-05 25.6 4.3 59 67-131 150-211 (212)
140 PF04301 DUF452: Protein of un 79.2 1.1 2.3E-05 29.7 1.1 36 74-117 169-204 (213)
141 PRK04940 hypothetical protein; 78.9 6.9 0.00015 25.2 4.7 52 72-133 126-178 (180)
142 PF10605 3HBOH: 3HB-oligomer h 78.6 3.8 8.3E-05 31.4 3.9 49 68-116 552-604 (690)
143 PRK10252 entF enterobactin syn 74.6 7.9 0.00017 32.3 5.1 49 67-121 1233-1281(1296)
144 PF10230 DUF2305: Uncharacteri 68.9 17 0.00037 24.8 5.0 40 70-115 221-264 (266)
145 KOG2281 Dipeptidyl aminopeptid 67.4 17 0.00038 28.5 5.0 63 71-134 803-866 (867)
146 PF12740 Chlorophyllase2: Chlo 62.9 22 0.00048 24.4 4.5 49 69-121 153-211 (259)
147 PF10503 Esterase_phd: Esteras 60.8 8.4 0.00018 25.6 2.2 19 71-89 170-188 (220)
148 PF06289 FlbD: Flagellar prote 60.4 15 0.00032 19.1 2.6 37 98-135 22-58 (60)
149 PF06028 DUF915: Alpha/beta hy 60.2 7.5 0.00016 26.5 2.0 60 70-132 184-252 (255)
150 COG1582 FlgEa Uncharacterized 56.5 25 0.00054 18.5 3.0 38 98-136 22-59 (67)
151 TIGR00976 /NonD putative hydro 53.9 43 0.00094 25.5 5.3 47 64-115 226-272 (550)
152 KOG1283 Serine carboxypeptidas 53.4 10 0.00023 27.0 1.8 60 71-131 326-410 (414)
153 COG3946 VirJ Type IV secretory 53.1 51 0.0011 24.5 5.1 55 64-132 389-446 (456)
154 KOG2182 Hydrolytic enzymes of 52.5 16 0.00036 27.4 2.7 40 70-117 433-472 (514)
155 COG2830 Uncharacterized protei 49.1 12 0.00027 23.8 1.5 35 75-117 169-203 (214)
156 COG2936 Predicted acyl esteras 46.3 49 0.0011 25.5 4.4 51 61-117 243-293 (563)
157 PLN02733 phosphatidylcholine-s 43.1 23 0.00049 26.3 2.3 52 74-134 370-421 (440)
158 cd08770 DAP_dppA_3 Peptidase M 42.7 92 0.002 21.5 5.0 55 67-132 144-199 (263)
159 COG4553 DepA Poly-beta-hydroxy 41.8 47 0.001 23.6 3.5 65 70-136 339-408 (415)
160 cd08769 DAP_dppA_2 Peptidase M 41.3 1.1E+02 0.0024 21.2 5.2 55 67-132 144-200 (270)
161 cd03148 GATase1_EcHsp31_like T 40.1 51 0.0011 22.1 3.4 31 103-134 96-128 (232)
162 cd00281 DAP_dppA Peptidase M55 39.0 93 0.002 21.5 4.5 55 67-132 143-199 (265)
163 PF03403 PAF-AH_p_II: Platelet 38.8 16 0.00034 26.5 1.0 52 66-121 270-321 (379)
164 cd08663 DAP_dppA_1 Peptidase M 37.9 1.1E+02 0.0024 21.2 4.8 55 67-132 144-200 (266)
165 COG3347 Uncharacterized conser 36.5 69 0.0015 23.5 3.7 52 83-134 162-213 (404)
166 PF10929 DUF2811: Protein of u 36.1 49 0.0011 17.0 2.2 17 116-132 22-38 (57)
167 PF12048 DUF3530: Protein of u 35.9 36 0.00078 23.9 2.3 71 63-135 239-309 (310)
168 COG0420 SbcD DNA repair exonuc 35.8 28 0.00061 25.1 1.8 23 66-88 71-93 (390)
169 TIGR00583 mre11 DNA repair pro 35.7 37 0.0008 25.0 2.4 18 68-85 108-125 (405)
170 KOG2521 Uncharacterized conser 33.9 91 0.002 22.6 4.0 65 69-135 224-290 (350)
171 COG4844 Uncharacterized protei 33.5 75 0.0016 16.9 2.7 26 113-138 53-78 (78)
172 KOG3847 Phospholipase A2 (plat 32.1 1.3E+02 0.0028 21.7 4.4 65 64-132 281-345 (399)
173 COG4099 Predicted peptidase [G 29.3 59 0.0013 23.2 2.4 28 65-92 309-337 (387)
174 PF08384 NPP: Pro-opiomelanoco 28.1 38 0.00083 16.4 1.0 14 105-118 31-44 (45)
175 COG3319 Thioesterase domains o 28.0 95 0.0021 21.3 3.2 57 71-135 193-252 (257)
176 PF02089 Palm_thioest: Palmito 28.0 76 0.0017 22.1 2.8 40 70-110 5-44 (279)
177 COG1505 Serine proteases of th 27.9 2.5E+02 0.0054 22.2 5.5 64 71-135 581-646 (648)
178 TIGR00067 glut_race glutamate 27.0 1.6E+02 0.0035 20.0 4.2 36 94-129 14-50 (251)
179 COG0693 ThiJ Putative intracel 26.7 77 0.0017 20.1 2.6 33 102-134 65-98 (188)
180 PF06107 DUF951: Bacterial pro 26.1 31 0.00068 17.7 0.5 28 102-131 28-55 (57)
181 KOG3170 Conserved phosducin-li 25.8 60 0.0013 21.6 1.9 18 64-81 155-172 (240)
182 COG1770 PtrB Protease II [Amin 25.8 2.7E+02 0.0059 22.2 5.5 55 71-126 610-667 (682)
183 cd03147 GATase1_Ydr533c_like T 25.1 99 0.0021 20.8 2.9 31 103-134 94-126 (231)
184 COG3411 Ferredoxin [Energy pro 24.1 1.2E+02 0.0027 15.9 3.0 30 104-134 18-47 (64)
185 PRK04155 chaperone protein Hch 23.8 84 0.0018 21.9 2.4 31 103-134 147-179 (287)
186 PLN02606 palmitoyl-protein thi 23.6 1.4E+02 0.0029 21.3 3.4 31 103-136 267-297 (306)
187 PRK00865 glutamate racemase; P 23.0 2.1E+02 0.0045 19.5 4.2 35 94-128 21-56 (261)
188 COG1103 Archaea-specific pyrid 23.0 1.3E+02 0.0028 21.3 3.1 56 77-134 97-152 (382)
189 TIGR03230 lipo_lipase lipoprot 22.7 3.4E+02 0.0074 20.5 5.8 64 70-134 41-109 (442)
190 cd01833 XynB_like SGNH_hydrola 22.3 1.9E+02 0.0041 17.4 5.3 62 73-134 44-112 (157)
191 COG0796 MurI Glutamate racemas 22.1 2.5E+02 0.0054 19.6 4.3 34 94-127 21-55 (269)
192 PLN00180 NDF6 (NDH-dependent f 22.0 98 0.0021 19.5 2.2 33 73-120 112-144 (180)
193 KOG1579 Homocysteine S-methylt 21.5 1.2E+02 0.0025 21.7 2.7 24 96-119 242-265 (317)
194 PRK06007 fliF flagellar MS-rin 21.2 71 0.0015 24.5 1.8 17 118-134 524-540 (542)
195 PF14553 YqbF: YqbF, hypotheti 21.1 7.4 0.00016 18.7 -2.2 26 113-138 10-35 (43)
196 COG2808 PaiB Transcriptional r 20.7 2.7E+02 0.0059 18.5 4.9 61 70-132 71-131 (209)
197 PLN02633 palmitoyl protein thi 20.4 1.3E+02 0.0029 21.4 2.9 59 69-130 24-88 (314)
198 cd03144 GATase1_ScBLP_like Typ 20.2 46 0.001 19.7 0.6 33 103-137 44-79 (114)
199 COG3910 Predicted ATPase [Gene 20.2 2.3E+02 0.005 19.0 3.7 36 99-135 191-227 (233)
No 1
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.79 E-value=2.1e-18 Score=120.47 Aligned_cols=122 Identities=71% Similarity=1.289 Sum_probs=88.0
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHhhhhcccCcchHHHHHHHhhCCCCCCccCcCCCCCCCEEEEecCCCCCCCCCCch
Q 038186 11 LGNVLLSIYANKESVDETLVEVLIFSTYIACNEEGVLDAFVSIVTGPPGPNPVQLMPTIFIPVLVLWGDKDPFTPLDGPV 90 (138)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvlii~G~~D~~~~~~~~~ 90 (138)
++.++...+.++..++++..+.+. .....+.....+.++.......+....+.++++|||+|||++|.++|.+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLii~G~~D~~~p~~~~~ 312 (360)
T PLN02679 237 LKNILLSVYGNKEAVDDELVEIIR----GPADDEGALDAFVSIVTGPPGPNPIKLIPRISLPILVLWGDQDPFTPLDGPV 312 (360)
T ss_pred HHHHHHHhccCcccCCHHHHHHHH----hhccCCChHHHHHHHHhcCCCCCHHHHhhhcCCCEEEEEeCCCCCcCchhhH
Confidence 334444444555566777766654 3344444555666655432233344567899999999999999999987432
Q ss_pred hhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHhhhc
Q 038186 91 GKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLAETF 136 (138)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~~~ 136 (138)
.++++.+.+.+|+++++++++|||++++|+|+.|++.|.+||++..
T Consensus 313 ~~~~~~l~~~ip~~~l~~i~~aGH~~~~E~Pe~~~~~I~~FL~~~~ 358 (360)
T PLN02679 313 GKYFSSLPSQLPNVTLYVLEGVGHCPHDDRPDLVHEKLLPWLAQLP 358 (360)
T ss_pred HHHHHhhhccCCceEEEEcCCCCCCccccCHHHHHHHHHHHHHhcC
Confidence 2344567778999999999999999999999999999999998764
No 2
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.71 E-value=7.1e-17 Score=109.84 Aligned_cols=108 Identities=34% Similarity=0.678 Sum_probs=78.0
Q ss_pred HhcCCCCCCHHHHHHHHHhhhhcccCcchHHHHHHHhhCCCCCCccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhh
Q 038186 18 IYANKESVDETLVEVLIFSTYIACNEEGVLDAFVSIVTGPPGPNPVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSL 97 (138)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~ 97 (138)
.+.+...++++.++.+. .....+.....+..+..........+.+.++++||++|||++|.+++.+.+. .+
T Consensus 186 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~-----~~ 256 (294)
T PLN02824 186 CYHDDSAVTDELVEAIL----RPGLEPGAVDVFLDFISYSGGPLPEELLPAVKCPVLIAWGEKDPWEPVELGR-----AY 256 (294)
T ss_pred hccChhhccHHHHHHHH----hccCCchHHHHHHHHhccccccchHHHHhhcCCCeEEEEecCCCCCChHHHH-----HH
Confidence 34444456666665553 3333344444555544222222234567889999999999999999987542 67
Q ss_pred cccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHhh
Q 038186 98 PSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLAE 134 (138)
Q Consensus 98 ~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 134 (138)
.+..+++++++++++||++++|+|+.|++.|.+|+++
T Consensus 257 ~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 293 (294)
T PLN02824 257 ANFDAVEDFIVLPGVGHCPQDEAPELVNPLIESFVAR 293 (294)
T ss_pred HhcCCccceEEeCCCCCChhhhCHHHHHHHHHHHHhc
Confidence 7778889999999999999999999999999999975
No 3
>PLN02578 hydrolase
Probab=99.60 E-value=9.7e-15 Score=101.93 Aligned_cols=108 Identities=28% Similarity=0.574 Sum_probs=77.1
Q ss_pred HHHhcCCCCCCHHHHHHHHHhhhhcccCcchHHHHHHHhh----CCCCCCccCcCCCCCCCEEEEecCCCCCCCCCCchh
Q 038186 16 LSIYANKESVDETLVEVLIFSTYIACNEEGVLDAFVSIVT----GPPGPNPVQLMPTIFIPVLVLWGDKDPFTPLDGPVG 91 (138)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~ 91 (138)
...+.+...+++...+.+. .+...+.....+...+. ........+.+.++++|+++|||++|.+++.+.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~v~~~~~-- 315 (354)
T PLN02578 242 KSVYKDKSNVDDYLVESIT----EPAADPNAGEVYYRLMSRFLFNQSRYTLDSLLSKLSCPLLLLWGDLDPWVGPAKA-- 315 (354)
T ss_pred HHhcCCcccCCHHHHHHHH----hcccCCchHHHHHHHHHHHhcCCCCCCHHHHhhcCCCCEEEEEeCCCCCCCHHHH--
Confidence 3344444555666555543 33444444444443322 1122334567889999999999999999988854
Q ss_pred hhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHh
Q 038186 92 KYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLA 133 (138)
Q Consensus 92 ~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~ 133 (138)
+.+.+.+|+++++++ ++||+++.|+|+++++.|.+|++
T Consensus 316 ---~~l~~~~p~a~l~~i-~~GH~~~~e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 316 ---EKIKAFYPDTTLVNL-QAGHCPHDEVPEQVNKALLEWLS 353 (354)
T ss_pred ---HHHHHhCCCCEEEEe-CCCCCccccCHHHHHHHHHHHHh
Confidence 277788899999999 58999999999999999999986
No 4
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.56 E-value=3.3e-14 Score=95.97 Aligned_cols=67 Identities=22% Similarity=0.383 Sum_probs=60.4
Q ss_pred ccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHh
Q 038186 62 PVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLA 133 (138)
Q Consensus 62 ~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~ 133 (138)
....+.++++|+|+|+|++|.+++++.+. .+.+.+|++++++++++||+++.|+|+.|++.|.+|++
T Consensus 215 ~~~~l~~i~~Pvlli~G~~D~~v~~~~~~-----~~~~~~~~~~~~~i~~agH~~~~e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 215 VTARLGEIKAKTLVTWGRDDRFVPLDHGL-----KLLWNMPDAQLHVFSRCGHWAQWEHADAFNRLVIDFLR 281 (282)
T ss_pred HHHHHhhCCCCEEEEEccCCCcCCchhHH-----HHHHhCCCCEEEEeCCCCcCCcccCHHHHHHHHHHHhh
Confidence 34567889999999999999999988653 77788899999999999999999999999999999986
No 5
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.55 E-value=4.5e-15 Score=99.10 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=61.5
Q ss_pred CccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHhh
Q 038186 61 NPVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLAE 134 (138)
Q Consensus 61 ~~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 134 (138)
+..+.+.++++|||+|+|++|.++|.+.+ +.+.+.+++++++++++|||++++|+|+.|++.|.+|-++
T Consensus 187 ~~~~~l~~i~~P~lii~G~~D~~~~~~~~-----~~~~~~i~~~~~~~i~~~gH~~~~e~p~~f~~~l~~~~~~ 255 (256)
T PRK10349 187 DLRQPLQNVSMPFLRLYGYLDGLVPRKVV-----PMLDKLWPHSESYIFAKAAHAPFISHPAEFCHLLVALKQR 255 (256)
T ss_pred ccHHHHhhcCCCeEEEecCCCccCCHHHH-----HHHHHhCCCCeEEEeCCCCCCccccCHHHHHHHHHHHhcc
Confidence 45667889999999999999999988754 2777889999999999999999999999999999999764
No 6
>PLN02965 Probable pheophorbidase
Probab=99.54 E-value=7.9e-15 Score=98.01 Aligned_cols=67 Identities=13% Similarity=0.082 Sum_probs=60.3
Q ss_pred cCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHhhhc
Q 038186 65 LMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLAETF 136 (138)
Q Consensus 65 ~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~~~ 136 (138)
.+..+++|+++|+|++|.+++++.+ +.+++.+|+++++++++|||++++|+|+.|++.|.+|++.+.
T Consensus 188 ~~~~i~vP~lvi~g~~D~~~~~~~~-----~~~~~~~~~a~~~~i~~~GH~~~~e~p~~v~~~l~~~~~~~~ 254 (255)
T PLN02965 188 NPEAEKVPRVYIKTAKDNLFDPVRQ-----DVMVENWPPAQTYVLEDSDHSAFFSVPTTLFQYLLQAVSSLQ 254 (255)
T ss_pred hhhcCCCCEEEEEcCCCCCCCHHHH-----HHHHHhCCcceEEEecCCCCchhhcCHHHHHHHHHHHHHHhc
Confidence 4557899999999999999999754 388889999999999999999999999999999999998753
No 7
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.54 E-value=6.1e-15 Score=101.62 Aligned_cols=71 Identities=38% Similarity=0.677 Sum_probs=62.5
Q ss_pred CccCcCCCCC-CCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHhhhc
Q 038186 61 NPVQLMPTIF-IPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLAETF 136 (138)
Q Consensus 61 ~~~~~~~~i~-~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~~~ 136 (138)
.....+.++. +|||+|||++|.++|.+.+. .+.+.+|+++++++++|||.+|+|.|+.+++.|..|++...
T Consensus 254 ~~~~~~~~i~~~pvlii~G~~D~~~p~~~~~-----~~~~~~pn~~~~~I~~~gH~~h~e~Pe~~~~~i~~Fi~~~~ 325 (326)
T KOG1454|consen 254 NLLSLIKKIWKCPVLIIWGDKDQIVPLELAE-----ELKKKLPNAELVEIPGAGHLPHLERPEEVAALLRSFIARLR 325 (326)
T ss_pred hHHHhhccccCCceEEEEcCcCCccCHHHHH-----HHHhhCCCceEEEeCCCCcccccCCHHHHHHHHHHHHHHhc
Confidence 3444566776 99999999999999999653 77787899999999999999999999999999999998764
No 8
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.51 E-value=5.7e-14 Score=95.64 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=57.9
Q ss_pred CcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHhhhc
Q 038186 64 QLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLAETF 136 (138)
Q Consensus 64 ~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~~~ 136 (138)
..+.++++|||+|||++|.++++.... +.+.+..++++++++++|||+++.|+|+.+++.|.+|+++..
T Consensus 222 ~~l~~i~~P~lii~G~~D~~~~~~~~~----~~~~~~~~~~~~~~i~~~gH~~~~e~p~~v~~~i~~fl~~~~ 290 (295)
T PRK03592 222 QWLATSDVPKLLINAEPGAILTTGAIR----DWCRSWPNQLEITVFGAGLHFAQEDSPEEIGAAIAAWLRRLR 290 (295)
T ss_pred HHhccCCCCeEEEeccCCcccCcHHHH----HHHHHhhhhcceeeccCcchhhhhcCHHHHHHHHHHHHHHhc
Confidence 456789999999999999999554321 134456788999999999999999999999999999998764
No 9
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.46 E-value=6.2e-14 Score=91.94 Aligned_cols=67 Identities=19% Similarity=0.277 Sum_probs=59.0
Q ss_pred CccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHH
Q 038186 61 NPVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWL 132 (138)
Q Consensus 61 ~~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl 132 (138)
+....+.++++||++|+|++|.+++.+.. +.+.+.+|++++++++++||++++|+|+.+++.|.+|+
T Consensus 179 ~~~~~l~~i~~Pvlii~g~~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fi 245 (245)
T TIGR01738 179 DLRQPLQNISVPFLRLYGYLDGLVPAKVV-----PYLDKLAPHSELYIFAKAAHAPFLSHAEAFCALLVAFK 245 (245)
T ss_pred cHHHHHhcCCCCEEEEeecCCcccCHHHH-----HHHHHhCCCCeEEEeCCCCCCccccCHHHHHHHHHhhC
Confidence 34456788999999999999999998753 26777889999999999999999999999999999985
No 10
>PRK06489 hypothetical protein; Provisional
Probab=99.45 E-value=1.4e-13 Score=96.28 Aligned_cols=73 Identities=18% Similarity=0.265 Sum_probs=62.3
Q ss_pred CCccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCC----CCCCCCcChHHHHHHHHHHHhhh
Q 038186 60 PNPVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGV----RHCPHDDRPELVHENMLPWLAET 135 (138)
Q Consensus 60 ~~~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----gH~~~~e~p~~~~~~i~~fl~~~ 135 (138)
.+..+.+.+|++|||+|+|++|.++|++.+. ++.+++.+|+++++++|+| ||+++ |+|+.|++.|.+||+.+
T Consensus 282 ~d~~~~L~~I~~PvLvI~G~~D~~~p~~~~~---~~~la~~ip~a~l~~i~~a~~~~GH~~~-e~P~~~~~~i~~FL~~~ 357 (360)
T PRK06489 282 YNPSPDLEKIKAPVLAINSADDERNPPETGV---MEAALKRVKHGRLVLIPASPETRGHGTT-GSAKFWKAYLAEFLAQV 357 (360)
T ss_pred cChHHHHHhCCCCEEEEecCCCcccChhhHH---HHHHHHhCcCCeEEEECCCCCCCCcccc-cCHHHHHHHHHHHHHhc
Confidence 3456778899999999999999999988531 1267888999999999996 99997 89999999999999875
Q ss_pred c
Q 038186 136 F 136 (138)
Q Consensus 136 ~ 136 (138)
.
T Consensus 358 ~ 358 (360)
T PRK06489 358 P 358 (360)
T ss_pred c
Confidence 4
No 11
>PRK07581 hypothetical protein; Validated
Probab=99.45 E-value=7.2e-14 Score=96.97 Aligned_cols=71 Identities=14% Similarity=0.054 Sum_probs=62.9
Q ss_pred CccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecC-CCCCCCCcChHHHHHHHHHHHhhhc
Q 038186 61 NPVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEG-VRHCPHDDRPELVHENMLPWLAETF 136 (138)
Q Consensus 61 ~~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~gH~~~~e~p~~~~~~i~~fl~~~~ 136 (138)
+..+.+.+|++|||+|+|++|.++++..+. .+.+.+|+++++++++ |||++++|+|+.+++.|.+||++..
T Consensus 266 d~~~~L~~I~~PtLvI~G~~D~~~p~~~~~-----~l~~~ip~a~l~~i~~~~GH~~~~~~~~~~~~~~~~~~~~~~ 337 (339)
T PRK07581 266 DLAAALGSITAKTFVMPISTDLYFPPEDCE-----AEAALIPNAELRPIESIWGHLAGFGQNPADIAFIDAALKELL 337 (339)
T ss_pred CHHHHHhcCCCCEEEEEeCCCCCCCHHHHH-----HHHHhCCCCeEEEeCCCCCccccccCcHHHHHHHHHHHHHHH
Confidence 345678889999999999999999988542 7778889999999998 9999999999999999999998753
No 12
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.44 E-value=1.5e-13 Score=93.37 Aligned_cols=60 Identities=20% Similarity=0.352 Sum_probs=52.9
Q ss_pred CCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHh
Q 038186 70 FIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLA 133 (138)
Q Consensus 70 ~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~ 133 (138)
++||++|||++|.++++... . +.+.+.+|++++++++++||++++|+|+.|++.|.+||.
T Consensus 227 ~~PtliI~G~~D~~~~~~~~-~---~~~~~~ip~~~~~~i~~aGH~~~~e~Pe~~~~~i~~~~~ 286 (286)
T PRK03204 227 TKPTLLVWGMKDVAFRPKTI-L---PRLRATFPDHVLVELPNAKHFIQEDAPDRIAAAIIERFG 286 (286)
T ss_pred CCCeEEEecCCCcccCcHHH-H---HHHHHhcCCCeEEEcCCCcccccccCHHHHHHHHHHhcC
Confidence 89999999999998866531 1 377789999999999999999999999999999999973
No 13
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.43 E-value=1.6e-13 Score=92.70 Aligned_cols=67 Identities=31% Similarity=0.416 Sum_probs=59.6
Q ss_pred CcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHhhhc
Q 038186 64 QLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLAETF 136 (138)
Q Consensus 64 ~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~~~ 136 (138)
+.+.++++||++|||++|++++++.+ +.+.+.+|+++++++++ ||++++|+|+.+++.|.+|+++..
T Consensus 201 ~~l~~i~~P~lii~G~~D~~v~~~~~-----~~l~~~~~~~~~~~i~~-gH~~~~e~p~~~~~~i~~fl~~~~ 267 (276)
T TIGR02240 201 HWLHKIQQPTLVLAGDDDPIIPLINM-----RLLAWRIPNAELHIIDD-GHLFLITRAEAVAPIIMKFLAEER 267 (276)
T ss_pred hHhhcCCCCEEEEEeCCCCcCCHHHH-----HHHHHhCCCCEEEEEcC-CCchhhccHHHHHHHHHHHHHHhh
Confidence 55789999999999999999998854 27778899999999985 999999999999999999998754
No 14
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.43 E-value=2.5e-13 Score=92.81 Aligned_cols=66 Identities=21% Similarity=0.336 Sum_probs=57.8
Q ss_pred CcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcE---EEEecCCCCCCCCcChHHHHHHHHHHHhhh
Q 038186 64 QLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVK---LIVLEGVRHCPHDDRPELVHENMLPWLAET 135 (138)
Q Consensus 64 ~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~gH~~~~e~p~~~~~~i~~fl~~~ 135 (138)
..+.++++||++|||++|.+++... . .+.+.+++++ +++++++||++++|+|+.|++.|.+|++++
T Consensus 233 ~~l~~i~~P~lii~G~~D~~~~~~~-~-----~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 233 AVLERWDKPFLTAFSDSDPITGGGD-A-----ILQKRIPGAAGQPHPTIKGAGHFLQEDSGEELAEAVLEFIRAT 301 (302)
T ss_pred HhhhcCCCceEEEecCCCCcccCch-H-----HHHhhcccccccceeeecCCCccchhhChHHHHHHHHHHHhcC
Confidence 4568899999999999999998753 2 6777888776 889999999999999999999999999865
No 15
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=99.43 E-value=7.9e-13 Score=89.36 Aligned_cols=104 Identities=21% Similarity=0.385 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHhhhhcccCcchHHHHHHHhhCCCCCCccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCc
Q 038186 25 VDETLVEVLIFSTYIACNEEGVLDAFVSIVTGPPGPNPVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNV 104 (138)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~ 104 (138)
.+++.++.+...+ ......+..++++++..... ...-.+..+++||++|||+.|.+.+... .+ +.+++.+|+.
T Consensus 216 ~t~edi~~~~~~f-~~~g~~gplNyyrn~~r~w~--a~~~~~~~i~iPv~fi~G~~D~v~~~p~-~~---~~~rk~vp~l 288 (322)
T KOG4178|consen 216 LTEEDIAFYVSKF-QIDGFTGPLNYYRNFRRNWE--AAPWALAKITIPVLFIWGDLDPVLPYPI-FG---ELYRKDVPRL 288 (322)
T ss_pred hhHHHHHHHHhcc-ccccccccchhhHHHhhCch--hccccccccccceEEEEecCcccccchh-HH---HHHHHhhccc
Confidence 5677888776433 33445666777888764221 3456788999999999999999998872 12 2566677776
Q ss_pred -EEEEecCCCCCCCCcChHHHHHHHHHHHhhh
Q 038186 105 -KLIVLEGVRHCPHDDRPELVHENMLPWLAET 135 (138)
Q Consensus 105 -~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~~ 135 (138)
+.++++|+|||++.|+|++|++.|.+|+++.
T Consensus 289 ~~~vv~~~~gH~vqqe~p~~v~~~i~~f~~~~ 320 (322)
T KOG4178|consen 289 TERVVIEGIGHFVQQEKPQEVNQAILGFINSF 320 (322)
T ss_pred cceEEecCCcccccccCHHHHHHHHHHHHHhh
Confidence 7889999999999999999999999999875
No 16
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.41 E-value=9.7e-13 Score=88.36 Aligned_cols=66 Identities=23% Similarity=0.354 Sum_probs=58.7
Q ss_pred cCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHh
Q 038186 63 VQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLA 133 (138)
Q Consensus 63 ~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~ 133 (138)
...+.++++|+++|+|++|.+++++.. +.+.+.+++++++.++++||++++|.|+.+++.|.+|++
T Consensus 213 ~~~~~~i~~P~lii~g~~D~~vp~~~~-----~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 213 NRDLPRITIPLHLIAGEEDKAVPPDES-----KRAATRVPTATLHVVPGGGHLVHEEQADGVVGLILQAAE 278 (278)
T ss_pred hhhcccCCCCEEEEEeCCCcccCHHHH-----HHHHHhccCCeEEEECCCCCcccccCHHHHHHHHHHHhC
Confidence 345778999999999999999998754 277778899999999999999999999999999999984
No 17
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.40 E-value=6.1e-13 Score=88.55 Aligned_cols=66 Identities=20% Similarity=0.420 Sum_probs=58.9
Q ss_pred CcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHhh
Q 038186 64 QLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLAE 134 (138)
Q Consensus 64 ~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 134 (138)
+.+..+++|+|+|+|++|..++.+.. +.+.+.+|++++++++++||++++|+|+.+++.|.+|+..
T Consensus 189 ~~~~~~~~P~l~i~G~~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 189 EKIPAWPHPALFIRGGNSPYVTEAYR-----DDLLAQFPQARAHVIAGAGHWVHAEKPDAVLRAIRRYLND 254 (255)
T ss_pred cccCCCCCCeEEEECCCCCCCCHHHH-----HHHHHhCCCcEEEEeCCCCCeeeccCHHHHHHHHHHHHhc
Confidence 45667899999999999999988754 3778889999999999999999999999999999999975
No 18
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.38 E-value=5.7e-13 Score=95.84 Aligned_cols=63 Identities=13% Similarity=0.238 Sum_probs=57.2
Q ss_pred CCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCC-cChHHHHHHHHHHHhh
Q 038186 67 PTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHD-DRPELVHENMLPWLAE 134 (138)
Q Consensus 67 ~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~ 134 (138)
.+|++|||+|||++|.++|++.+. .+++.+|++++++++++||++++ |+|+.+++.|.+|...
T Consensus 415 ~~I~vPtLII~Ge~D~ivP~~~~~-----~la~~iP~a~l~vI~~aGH~~~v~e~p~~fa~~L~~F~~~ 478 (481)
T PLN03087 415 DQLKCDVAIFHGGDDELIPVECSY-----AVKAKVPRARVKVIDDKDHITIVVGRQKEFARELEEIWRR 478 (481)
T ss_pred HhCCCCEEEEEECCCCCCCHHHHH-----HHHHhCCCCEEEEeCCCCCcchhhcCHHHHHHHHHHHhhc
Confidence 468999999999999999998653 78889999999999999999985 9999999999999864
No 19
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.38 E-value=6.8e-13 Score=87.82 Aligned_cols=68 Identities=24% Similarity=0.337 Sum_probs=60.1
Q ss_pred ccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHhh
Q 038186 62 PVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLAE 134 (138)
Q Consensus 62 ~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 134 (138)
....+.++++|+++++|++|.+++.+.+. .+.+.+++++++.++++||++++|+|+.+++.|.+|++.
T Consensus 190 ~~~~~~~i~~P~l~i~g~~D~~~~~~~~~-----~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~i~~fl~~ 257 (257)
T TIGR03611 190 VSARLDRIQHPVLLIANRDDMLVPYTQSL-----RLAAALPNAQLKLLPYGGHASNVTDPETFNRALLDFLKT 257 (257)
T ss_pred cHHHhcccCccEEEEecCcCcccCHHHHH-----HHHHhcCCceEEEECCCCCCccccCHHHHHHHHHHHhcC
Confidence 44567788999999999999999988643 677788999999999999999999999999999999863
No 20
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.38 E-value=1.6e-13 Score=96.60 Aligned_cols=70 Identities=11% Similarity=-0.010 Sum_probs=60.6
Q ss_pred ccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCc----EEEEec-CCCCCCCCcChHHHHHHHHHHHhhhc
Q 038186 62 PVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNV----KLIVLE-GVRHCPHDDRPELVHENMLPWLAETF 136 (138)
Q Consensus 62 ~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~-~~gH~~~~e~p~~~~~~i~~fl~~~~ 136 (138)
+.+.+.+|++|||+|+|++|.++|++.+ +.+++.++++ ++++++ +|||++++|+|++|++.|.+||.+..
T Consensus 301 ~~~~l~~I~~PtLvI~G~~D~~~p~~~~-----~~la~~i~~a~~~~~l~~i~~~~GH~~~le~p~~~~~~L~~FL~~~~ 375 (379)
T PRK00175 301 LAAALARIKARFLVVSFTSDWLFPPARS-----REIVDALLAAGADVSYAEIDSPYGHDAFLLDDPRYGRLVRAFLERAA 375 (379)
T ss_pred HHHHHhcCCCCEEEEEECCccccCHHHH-----HHHHHHHHhcCCCeEEEEeCCCCCchhHhcCHHHHHHHHHHHHHhhh
Confidence 5677899999999999999999998864 2677777776 777775 99999999999999999999998754
No 21
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.37 E-value=3e-13 Score=94.13 Aligned_cols=67 Identities=22% Similarity=0.191 Sum_probs=58.0
Q ss_pred cCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccC-CCcEEEEecC-CCCCCCCcChHHHHHHHHHHHhhhc
Q 038186 65 LMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKL-SNVKLIVLEG-VRHCPHDDRPELVHENMLPWLAETF 136 (138)
Q Consensus 65 ~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~-~gH~~~~e~p~~~~~~i~~fl~~~~ 136 (138)
.+.+|++|||+|+|++|.+++.+.+. .+.+.+ |+++++++++ +||++++|+|+.|++.|.+||++..
T Consensus 272 ~l~~I~~PtLvi~G~~D~~~p~~~~~-----~~~~~i~p~a~l~~i~~~aGH~~~lE~Pe~~~~~l~~FL~~~~ 340 (343)
T PRK08775 272 DPEAIRVPTVVVAVEGDRLVPLADLV-----ELAEGLGPRGSLRVLRSPYGHDAFLKETDRIDAILTTALRSTG 340 (343)
T ss_pred ChhcCCCCeEEEEeCCCEeeCHHHHH-----HHHHHcCCCCeEEEEeCCccHHHHhcCHHHHHHHHHHHHHhcc
Confidence 46789999999999999999977532 666655 7999999985 9999999999999999999998753
No 22
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.34 E-value=2.2e-13 Score=95.07 Aligned_cols=67 Identities=19% Similarity=0.140 Sum_probs=58.4
Q ss_pred ccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEE-----EecCCCCCCCCcChHHHHHHHHHHHh
Q 038186 62 PVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLI-----VLEGVRHCPHDDRPELVHENMLPWLA 133 (138)
Q Consensus 62 ~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~gH~~~~e~p~~~~~~i~~fl~ 133 (138)
..+.+.+|++|||+|+|++|.++|++.+ +.+++.+|+++++ ++++|||++++|+|+.|++.|.+||.
T Consensus 280 ~~~~l~~I~~P~Lvi~G~~D~~~p~~~~-----~~~a~~i~~~~~~v~~~~i~~~~GH~~~le~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 280 LTEALSRIKAPFLVVSITSDWLFPPAES-----RELAKALPAAGLRVTYVEIESPYGHDAFLVETDQVEELIRGFLR 351 (351)
T ss_pred HHHHHhhCCCCEEEEEeCCccccCHHHH-----HHHHHHHhhcCCceEEEEeCCCCCcchhhcCHHHHHHHHHHHhC
Confidence 4567889999999999999999998864 3778888888765 56799999999999999999999984
No 23
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.32 E-value=2.1e-12 Score=90.05 Aligned_cols=69 Identities=25% Similarity=0.390 Sum_probs=57.6
Q ss_pred ccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccC--CCcEEEEecCCCCCCCCcChHH----HHHHHHHHHhhh
Q 038186 62 PVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKL--SNVKLIVLEGVRHCPHDDRPEL----VHENMLPWLAET 135 (138)
Q Consensus 62 ~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~gH~~~~e~p~~----~~~~i~~fl~~~ 135 (138)
....+.++++|||+|+|++|.+++.+.+. .+.+.+ +++++++++++||++++|+|+. +.+.|.+||++.
T Consensus 271 ~~~~l~~i~~P~Lii~G~~D~vv~~~~~~-----~l~~~~~~~~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~ 345 (349)
T PLN02385 271 IEMQLEEVSLPLLILHGEADKVTDPSVSK-----FLYEKASSSDKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSH 345 (349)
T ss_pred HHHhcccCCCCEEEEEeCCCCccChHHHH-----HHHHHcCCCCceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHh
Confidence 34567789999999999999999988642 554544 5789999999999999999986 888899999864
No 24
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.32 E-value=2.8e-12 Score=90.29 Aligned_cols=61 Identities=26% Similarity=0.309 Sum_probs=52.8
Q ss_pred CCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHh
Q 038186 67 PTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLA 133 (138)
Q Consensus 67 ~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~ 133 (138)
..+++||++|||++|.+++.+.+ +.+.+. ++++++++++|||++++|+|+.+++.|.+|+.
T Consensus 322 ~~i~vPvLiI~G~~D~~v~~~~~-----~~~a~~-~~a~l~vIp~aGH~~~~E~Pe~v~~~I~~Fl~ 382 (383)
T PLN03084 322 KNWKTPITVCWGLRDRWLNYDGV-----EDFCKS-SQHKLIELPMAGHHVQEDCGEELGGIISGILS 382 (383)
T ss_pred ccCCCCEEEEeeCCCCCcCHHHH-----HHHHHh-cCCeEEEECCCCCCcchhCHHHHHHHHHHHhh
Confidence 46899999999999999988753 245454 58899999999999999999999999999986
No 25
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.30 E-value=5e-12 Score=83.06 Aligned_cols=67 Identities=21% Similarity=0.365 Sum_probs=58.7
Q ss_pred ccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHh
Q 038186 62 PVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLA 133 (138)
Q Consensus 62 ~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~ 133 (138)
....+.++++|+++|+|++|.+++.+.. +.+.+.+++.+++.++++||++++|+|+.+++.|.+|+.
T Consensus 185 ~~~~~~~~~~Pvlii~g~~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~fl~ 251 (251)
T TIGR02427 185 FRDRLGAIAVPTLCIAGDQDGSTPPELV-----REIADLVPGARFAEIRGAGHIPCVEQPEAFNAALRDFLR 251 (251)
T ss_pred HHHHhhhcCCCeEEEEeccCCcCChHHH-----HHHHHhCCCceEEEECCCCCcccccChHHHHHHHHHHhC
Confidence 4456778899999999999999998853 266777889999999999999999999999999999974
No 26
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=99.30 E-value=1.4e-11 Score=78.24 Aligned_cols=70 Identities=23% Similarity=0.257 Sum_probs=63.3
Q ss_pred CccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHhhh
Q 038186 61 NPVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLAET 135 (138)
Q Consensus 61 ~~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~~ 135 (138)
-.+..+.+++|||+|++|+.|++++....- -+....+.+++++.|.++|-+++-.|++|+..+.+||++.
T Consensus 207 fCr~~lp~vkcPtli~hG~kDp~~~~~hv~-----fi~~~~~~a~~~~~peGkHn~hLrya~eFnklv~dFl~~~ 276 (277)
T KOG2984|consen 207 FCRLVLPQVKCPTLIMHGGKDPFCGDPHVC-----FIPVLKSLAKVEIHPEGKHNFHLRYAKEFNKLVLDFLKST 276 (277)
T ss_pred hHhhhcccccCCeeEeeCCcCCCCCCCCcc-----chhhhcccceEEEccCCCcceeeechHHHHHHHHHHHhcc
Confidence 356788999999999999999999988753 6677889999999999999999999999999999999875
No 27
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.29 E-value=2.4e-11 Score=85.06 Aligned_cols=65 Identities=26% Similarity=0.475 Sum_probs=54.7
Q ss_pred ccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHhh
Q 038186 62 PVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLAE 134 (138)
Q Consensus 62 ~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 134 (138)
....+.++++|+++|+|++|.+++.+.+ ....+++++++++++||++++|+|+.+++.|.+|+++
T Consensus 306 ~~~~l~~i~~Pvlii~g~~D~~vp~~~~--------~~l~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 306 LRDRLASLAIPVLVIWGEQDRIIPAAHA--------QGLPDGVAVHVLPGAGHMPQMEAAADVNRLLAEFLGK 370 (371)
T ss_pred HHHHHhcCCCCEEEEEECCCCccCHHHH--------hhccCCCeEEEeCCCCCChhhhCHHHHHHHHHHHhcc
Confidence 3345678899999999999999987743 1233568999999999999999999999999999975
No 28
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.28 E-value=4.2e-12 Score=83.98 Aligned_cols=63 Identities=17% Similarity=0.294 Sum_probs=52.5
Q ss_pred CccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHhh
Q 038186 61 NPVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLAE 134 (138)
Q Consensus 61 ~~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 134 (138)
+..+.+.++++|+++|||++|+.+. .+.+. ++++++++++|||++++|+|+.+++.|.+|++.
T Consensus 179 ~~~~~l~~i~~P~lii~G~~D~~~~----------~~~~~-~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 179 DLRPALQALTFPFYYLCGERDSKFQ----------ALAQQ-LALPLHVIPNAGHNAHRENPAAFAASLAQILRL 241 (242)
T ss_pred cHHHHhhccCCCeEEEEeCCcchHH----------HHHHH-hcCeEEEeCCCCCchhhhChHHHHHHHHHHHhh
Confidence 4556788999999999999998542 11222 379999999999999999999999999999975
No 29
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.28 E-value=4.9e-11 Score=84.71 Aligned_cols=69 Identities=13% Similarity=0.120 Sum_probs=54.7
Q ss_pred CccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccC-CCcEEEEecCCCCCCCCcChHHHHHHHHHHHhhh
Q 038186 61 NPVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKL-SNVKLIVLEGVRHCPHDDRPELVHENMLPWLAET 135 (138)
Q Consensus 61 ~~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~~ 135 (138)
+....+.+|++||++|+|++|.+.+... + .+.+.. ++++++++++|||++++|+|+.|++.|.+|++..
T Consensus 316 ~~~~~l~~I~vP~liI~G~~D~i~~~~~---~---~~~~~~~~~~~~~~i~~aGH~~~~E~P~~f~~~l~~~~~~~ 385 (402)
T PLN02894 316 PLLESASEWKVPTTFIYGRHDWMNYEGA---V---EARKRMKVPCEIIRVPQGGHFVFLDNPSGFHSAVLYACRKY 385 (402)
T ss_pred hHhhhcccCCCCEEEEEeCCCCCCcHHH---H---HHHHHcCCCCcEEEeCCCCCeeeccCHHHHHHHHHHHHHHh
Confidence 3455678899999999999998765332 1 333333 4588999999999999999999999999988754
No 30
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.27 E-value=5.7e-12 Score=84.54 Aligned_cols=65 Identities=15% Similarity=0.322 Sum_probs=55.1
Q ss_pred cCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHh
Q 038186 63 VQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLA 133 (138)
Q Consensus 63 ~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~ 133 (138)
.+.+.++++|+++++|++|.+ ++... +.+.+.++++++++++++||+++.|+|+++++.|.+|++
T Consensus 224 ~~~l~~i~~P~lii~G~~D~~-~~~~~-----~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 224 TDKLSEIKVPTLLTVGEFDTM-TPEAA-----REMQELIAGSRLVVFPDGSHMTMIEDPEVYFKLLSDFIR 288 (288)
T ss_pred HHHhhccCCCEEEEecCCCcc-CHHHH-----HHHHHhccCCeEEEeCCCCCCcccCCHHHHHHHHHHHhC
Confidence 345678999999999999985 44432 366777899999999999999999999999999999984
No 31
>PHA02857 monoglyceride lipase; Provisional
Probab=99.25 E-value=1.4e-11 Score=83.07 Aligned_cols=68 Identities=21% Similarity=0.477 Sum_probs=56.9
Q ss_pred cCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccC-CCcEEEEecCCCCCCCCcCh---HHHHHHHHHHHhhh
Q 038186 63 VQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKL-SNVKLIVLEGVRHCPHDDRP---ELVHENMLPWLAET 135 (138)
Q Consensus 63 ~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~gH~~~~e~p---~~~~~~i~~fl~~~ 135 (138)
...+.++++|||+|+|++|.++|++.+. .+.+.+ +++++++++++||.++.|++ +++.+.|.+||+..
T Consensus 202 ~~~l~~i~~Pvliv~G~~D~i~~~~~~~-----~l~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 202 RKIIPKIKTPILILQGTNNEISDVSGAY-----YFMQHANCNREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred HHhcccCCCCEEEEecCCCCcCChHHHH-----HHHHHccCCceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHh
Confidence 4567889999999999999999998653 555544 47899999999999999877 57889999999864
No 32
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.24 E-value=8.4e-12 Score=88.07 Aligned_cols=69 Identities=14% Similarity=0.129 Sum_probs=58.8
Q ss_pred CccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCC----CcEEEEecC-CCCCCCCcChHHHHHHHHHHHhh
Q 038186 61 NPVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLS----NVKLIVLEG-VRHCPHDDRPELVHENMLPWLAE 134 (138)
Q Consensus 61 ~~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~-~gH~~~~e~p~~~~~~i~~fl~~ 134 (138)
+..+.+.++++|||+|+|++|.++|++.+. .+.+.++ +++++++++ +||++++|+|+++++.|.+||++
T Consensus 314 dl~~~L~~I~~PtLvI~G~~D~l~p~~~~~-----~la~~lp~~~~~a~l~~I~s~~GH~~~le~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 314 SLEEALSNIEANVLMIPCKQDLLQPPRYNY-----KMVDILQKQGKYAEVYEIESINGHMAGVFDIHLFEKKIYEFLNR 387 (389)
T ss_pred CHHHHHhcCCCCEEEEEeCCCCCCCHHHHH-----HHHHHhhhcCCCeEEEEECCCCCcchhhcCHHHHHHHHHHHHcc
Confidence 355678899999999999999999988542 5555564 689999985 99999999999999999999975
No 33
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.22 E-value=2.6e-11 Score=82.10 Aligned_cols=65 Identities=25% Similarity=0.314 Sum_probs=59.2
Q ss_pred CCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHhhhc
Q 038186 67 PTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLAETF 136 (138)
Q Consensus 67 ~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~~~ 136 (138)
.....||++|.|.++..++.+.- ..+.+.+|++.++.+++||||++.|+|+.|.+.|.+|+++.+
T Consensus 250 ~~~~~pvlfi~g~~S~fv~~~~~-----~~~~~~fp~~e~~~ld~aGHwVh~E~P~~~~~~i~~Fl~~~~ 314 (315)
T KOG2382|consen 250 GPYTGPVLFIKGLQSKFVPDEHY-----PRMEKIFPNVEVHELDEAGHWVHLEKPEEFIESISEFLEEPE 314 (315)
T ss_pred cccccceeEEecCCCCCcChhHH-----HHHHHhccchheeecccCCceeecCCHHHHHHHHHHHhcccC
Confidence 77889999999999999999853 377788999999999999999999999999999999998764
No 34
>PLN02511 hydrolase
Probab=99.19 E-value=3.2e-11 Score=85.29 Aligned_cols=70 Identities=20% Similarity=0.255 Sum_probs=58.4
Q ss_pred ccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHH------HHHHHHHHHhhh
Q 038186 62 PVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPEL------VHENMLPWLAET 135 (138)
Q Consensus 62 ~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~------~~~~i~~fl~~~ 135 (138)
....+.+|++|||+|+|++|++++.+... ....+..|++.+++++++||+.++|+|+. +++.|.+|++..
T Consensus 290 ~~~~L~~I~vPtLiI~g~dDpi~p~~~~~----~~~~~~~p~~~l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl~~~ 365 (388)
T PLN02511 290 SSDSIKHVRVPLLCIQAANDPIAPARGIP----REDIKANPNCLLIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFLEAL 365 (388)
T ss_pred chhhhccCCCCeEEEEcCCCCcCCcccCc----HhHHhcCCCEEEEECCCcceeccccCCCCCCCCccHHHHHHHHHHHH
Confidence 34578899999999999999999987531 13556789999999999999999999975 589999999764
No 35
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.18 E-value=3.4e-11 Score=78.94 Aligned_cols=66 Identities=26% Similarity=0.378 Sum_probs=55.9
Q ss_pred ccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHh
Q 038186 62 PVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLA 133 (138)
Q Consensus 62 ~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~ 133 (138)
..+.+..+++|+++|+|++|..++.. . +.+.+..++++++.+|++||++++|+|+.+++.|.+|++
T Consensus 186 ~~~~~~~~~~P~l~i~g~~D~~~~~~---~---~~~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~i~~~l~ 251 (251)
T TIGR03695 186 LWPKLQALTIPVLYLCGEKDEKFVQI---A---KEMQKLLPNLTLVIIANAGHNIHLENPEAFAKILLAFLE 251 (251)
T ss_pred hHHHhhCCCCceEEEeeCcchHHHHH---H---HHHHhcCCCCcEEEEcCCCCCcCccChHHHHHHHHHHhC
Confidence 44557789999999999999876422 1 367778899999999999999999999999999999984
No 36
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.14 E-value=4.2e-11 Score=82.89 Aligned_cols=68 Identities=25% Similarity=0.417 Sum_probs=55.1
Q ss_pred cCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccC--CCcEEEEecCCCCCCCCcChHH----HHHHHHHHHhhh
Q 038186 63 VQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKL--SNVKLIVLEGVRHCPHDDRPEL----VHENMLPWLAET 135 (138)
Q Consensus 63 ~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~gH~~~~e~p~~----~~~~i~~fl~~~ 135 (138)
...+..+++|||+|||++|.+++.+.+. .+.+.+ ++.++++++++||.++.++|+. +.+.|.+||.+.
T Consensus 244 ~~~l~~i~~PvLii~G~~D~ivp~~~~~-----~l~~~i~~~~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~ 317 (330)
T PLN02298 244 GKKLKDVSIPFIVLHGSADVVTDPDVSR-----ALYEEAKSEDKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNER 317 (330)
T ss_pred HHhhhhcCCCEEEEecCCCCCCCHHHHH-----HHHHHhccCCceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHh
Confidence 4567789999999999999999998642 554444 5789999999999999998864 666788888764
No 37
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.11 E-value=4.2e-11 Score=96.87 Aligned_cols=71 Identities=15% Similarity=0.258 Sum_probs=57.1
Q ss_pred CCccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCC------------cEEEEecCCCCCCCCcChHHHHHH
Q 038186 60 PNPVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSN------------VKLIVLEGVRHCPHDDRPELVHEN 127 (138)
Q Consensus 60 ~~~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~------------~~~~~i~~~gH~~~~e~p~~~~~~ 127 (138)
.+..+.+.++++|||+|+|++|..++ ..+ + .+.+.+++ ++++++++|||++++|+|+.+++.
T Consensus 1558 ~dl~~~L~~I~~PtLlI~Ge~D~~~~-~~a--~---~~~~~i~~a~~~~~~~~~~~a~lvvI~~aGH~~~lE~Pe~f~~~ 1631 (1655)
T PLN02980 1558 PSLWEDLKQCDTPLLLVVGEKDVKFK-QIA--Q---KMYREIGKSKESGNDKGKEIIEIVEIPNCGHAVHLENPLPVIRA 1631 (1655)
T ss_pred chHHHHHhhCCCCEEEEEECCCCccH-HHH--H---HHHHHccccccccccccccceEEEEECCCCCchHHHCHHHHHHH
Confidence 34557789999999999999999775 322 1 34444443 589999999999999999999999
Q ss_pred HHHHHhhhc
Q 038186 128 MLPWLAETF 136 (138)
Q Consensus 128 i~~fl~~~~ 136 (138)
|.+||++..
T Consensus 1632 I~~FL~~~~ 1640 (1655)
T PLN02980 1632 LRKFLTRLH 1640 (1655)
T ss_pred HHHHHHhcc
Confidence 999998754
No 38
>PRK10749 lysophospholipase L2; Provisional
Probab=99.11 E-value=5.4e-11 Score=82.45 Aligned_cols=68 Identities=12% Similarity=0.130 Sum_probs=54.3
Q ss_pred cCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhccc-------CCCcEEEEecCCCCCCCCcCh---HHHHHHHHHHH
Q 038186 63 VQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSK-------LSNVKLIVLEGVRHCPHDDRP---ELVHENMLPWL 132 (138)
Q Consensus 63 ~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~gH~~~~e~p---~~~~~~i~~fl 132 (138)
...+.++++|||+|+|++|.+++.+.+. .+.+. .+++++++++||||.++.|.+ +.+.+.|.+|+
T Consensus 252 ~~~~~~i~~P~Lii~G~~D~vv~~~~~~-----~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl 326 (330)
T PRK10749 252 LAGAGDITTPLLLLQAEEERVVDNRMHD-----RFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFF 326 (330)
T ss_pred HhhccCCCCCEEEEEeCCCeeeCHHHHH-----HHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHH
Confidence 3456788999999999999999998642 33332 256789999999999999886 67888899999
Q ss_pred hhh
Q 038186 133 AET 135 (138)
Q Consensus 133 ~~~ 135 (138)
++.
T Consensus 327 ~~~ 329 (330)
T PRK10749 327 NRH 329 (330)
T ss_pred hhc
Confidence 764
No 39
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.08 E-value=2.8e-10 Score=77.01 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=55.2
Q ss_pred CCCC-CCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHhhh
Q 038186 66 MPTI-FIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLAET 135 (138)
Q Consensus 66 ~~~i-~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~~ 135 (138)
...+ ++|+++|+|++|..+|++.. +.+.+.+++++++.++ +||.+++++|+.+++.|.++....
T Consensus 206 ~~~~~~vP~l~I~g~~D~~ip~~~~-----~~m~~~~~~~~~~~l~-~gH~p~ls~P~~~~~~i~~~a~~~ 270 (273)
T PLN02211 206 TGDIDKVPRVYIKTLHDHVVKPEQQ-----EAMIKRWPPSQVYELE-SDHSPFFSTPFLLFGLLIKAAASV 270 (273)
T ss_pred ccccCccceEEEEeCCCCCCCHHHH-----HHHHHhCCccEEEEEC-CCCCccccCHHHHHHHHHHHHHHh
Confidence 4455 79999999999999999853 2777788888999997 899999999999999999887654
No 40
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.05 E-value=1.3e-09 Score=74.58 Aligned_cols=104 Identities=18% Similarity=0.259 Sum_probs=73.5
Q ss_pred CCCHHHHHHHHHhhhhcccCcchHHHHHHHhhCCC--CCCccCcCCCCC--CCEEEEecCCCCCCCCCCchhhhhhhhcc
Q 038186 24 SVDETLVEVLIFSTYIACNEEGVLDAFVSIVTGPP--GPNPVQLMPTIF--IPVLVLWGDKDPFTPLDGPVGKYFSSLPS 99 (138)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~--~Pvlii~G~~D~~~~~~~~~~~~~~~~~~ 99 (138)
...++.+-.|+ |......+.+..++..++.... .......+..++ |||++|+|++|.+-.... . .+.+
T Consensus 255 ~~~ed~l~~Yi--Y~~n~~~psgE~~fk~l~~~~g~Ar~Pm~~r~~~l~~~~pv~fiyG~~dWmD~~~g---~---~~~~ 326 (365)
T KOG4409|consen 255 LIEEDFLHEYI--YHCNAQNPSGETAFKNLFEPGGWARRPMIQRLRELKKDVPVTFIYGDRDWMDKNAG---L---EVTK 326 (365)
T ss_pred cchhHHHHHHH--HHhcCCCCcHHHHHHHHHhccchhhhhHHHHHHhhccCCCEEEEecCcccccchhH---H---HHHH
Confidence 44556655554 3455666777778877765321 223445556665 999999999997665553 2 3333
Q ss_pred --cCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHhhh
Q 038186 100 --KLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLAET 135 (138)
Q Consensus 100 --~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~~ 135 (138)
....++.+++|++||.+.+|+|+.|++.+..+++..
T Consensus 327 ~~~~~~~~~~~v~~aGHhvylDnp~~Fn~~v~~~~~~~ 364 (365)
T KOG4409|consen 327 SLMKEYVEIIIVPGAGHHVYLDNPEFFNQIVLEECDKV 364 (365)
T ss_pred HhhcccceEEEecCCCceeecCCHHHHHHHHHHHHhcc
Confidence 334589999999999999999999999999998763
No 41
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.04 E-value=3.2e-10 Score=80.35 Aligned_cols=68 Identities=18% Similarity=0.311 Sum_probs=55.9
Q ss_pred cCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccC--CCcEEEEecCCCCCCCCc-ChHHHHHHHHHHHhhh
Q 038186 63 VQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKL--SNVKLIVLEGVRHCPHDD-RPELVHENMLPWLAET 135 (138)
Q Consensus 63 ~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~gH~~~~e-~p~~~~~~i~~fl~~~ 135 (138)
...+.+|++|+|+|+|++|.++|.+.+. .+.+.+ ++.+++++++++|.++.| .++++.+.|.+||+..
T Consensus 317 ~~~L~~I~vPvLIi~G~~D~vvp~~~a~-----~l~~~~~~~~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~ 387 (395)
T PLN02652 317 TRNFKSVTVPFMVLHGTADRVTDPLASQ-----DLYNEAASRHKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKR 387 (395)
T ss_pred HhhcccCCCCEEEEEeCCCCCCCHHHHH-----HHHHhcCCCCceEEEECCCeEEeccCCCHHHHHHHHHHHHHHH
Confidence 4567889999999999999999988652 443333 357899999999999776 7999999999999864
No 42
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=98.99 E-value=8.2e-11 Score=76.06 Aligned_cols=61 Identities=34% Similarity=0.635 Sum_probs=51.7
Q ss_pred ccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHH
Q 038186 62 PVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHEN 127 (138)
Q Consensus 62 ~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~ 127 (138)
....+..+++|+++|+|++|.+++.+.. +.+.+..+++++++++++||++++|+|++|+++
T Consensus 168 ~~~~~~~~~~pvl~i~g~~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~a 228 (228)
T PF12697_consen 168 LSEALPRIKVPVLVIHGEDDPIVPPESA-----EELADKLPNAELVVIPGAGHFLFLEQPDEVAEA 228 (228)
T ss_dssp HHHHHHGSSSEEEEEEETTSSSSHHHHH-----HHHHHHSTTEEEEEETTSSSTHHHHSHHHHHHH
T ss_pred ccccccccCCCeEEeecCCCCCCCHHHH-----HHHHHHCCCCEEEEECCCCCccHHHCHHHHhcC
Confidence 3456677799999999999999995532 377777899999999999999999999999874
No 43
>PRK05855 short chain dehydrogenase; Validated
Probab=98.98 E-value=8.6e-10 Score=81.35 Aligned_cols=64 Identities=11% Similarity=0.109 Sum_probs=55.6
Q ss_pred CCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHhhh
Q 038186 66 MPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLAET 135 (138)
Q Consensus 66 ~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~~ 135 (138)
...+++|+++|+|++|.+++.+... .+.+.+++..+++++ +||+++.|+|+.+++.|.+|+...
T Consensus 229 ~~~~~~P~lii~G~~D~~v~~~~~~-----~~~~~~~~~~~~~~~-~gH~~~~e~p~~~~~~i~~fl~~~ 292 (582)
T PRK05855 229 ERYTDVPVQLIVPTGDPYVRPALYD-----DLSRWVPRLWRREIK-AGHWLPMSHPQVLAAAVAEFVDAV 292 (582)
T ss_pred cCCccCceEEEEeCCCcccCHHHhc-----cccccCCcceEEEcc-CCCcchhhChhHHHHHHHHHHHhc
Confidence 4558999999999999999988542 666778888888886 699999999999999999999864
No 44
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=98.98 E-value=1.1e-10 Score=76.19 Aligned_cols=62 Identities=26% Similarity=0.622 Sum_probs=55.0
Q ss_pred cCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHH
Q 038186 63 VQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENML 129 (138)
Q Consensus 63 ~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~ 129 (138)
...+..+++|+++++|++|.++|.+... .+.+.+|+++++.++++||+.+++.|+++++.|.
T Consensus 168 ~~~l~~i~~p~l~i~~~~D~~~p~~~~~-----~~~~~~~~~~~~~~~~~GH~~~~~~~~~~~~~i~ 229 (230)
T PF00561_consen 168 SPALSNIKVPTLIIWGEDDPLVPPESSE-----QLAKLIPNSQLVLIEGSGHFAFLEGPDEFNEIII 229 (230)
T ss_dssp HHHHTTTTSEEEEEEETTCSSSHHHHHH-----HHHHHSTTEEEEEETTCCSTHHHHSHHHHHHHHH
T ss_pred cccccccCCCeEEEEeCCCCCCCHHHHH-----HHHHhcCCCEEEECCCCChHHHhcCHHhhhhhhc
Confidence 3456679999999999999999988643 6788999999999999999999999999999875
No 45
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=98.82 E-value=4.9e-09 Score=72.00 Aligned_cols=62 Identities=21% Similarity=0.307 Sum_probs=47.9
Q ss_pred CcCCCC-CCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHh
Q 038186 64 QLMPTI-FIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLA 133 (138)
Q Consensus 64 ~~~~~i-~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~ 133 (138)
+.+.++ ++|+++|+|++|.++|.+.+. .+.+.++++++++++++||+++.+ + ..+.|.+|+.
T Consensus 241 ~~~~~i~~~P~lii~g~~D~~~p~~~~~-----~~~~~~~~~~~~~~~~~gH~~~~~--~-~~~~i~~~~~ 303 (306)
T TIGR01249 241 DNISKIRNIPTYIVHGRYDLCCPLQSAW-----ALHKAFPEAELKVTNNAGHSAFDP--N-NLAALVHALE 303 (306)
T ss_pred HhhhhccCCCeEEEecCCCCCCCHHHHH-----HHHHhCCCCEEEEECCCCCCCCCh--H-HHHHHHHHHH
Confidence 455667 699999999999999998643 778889999999999999998632 2 3344555544
No 46
>PRK10985 putative hydrolase; Provisional
Probab=98.80 E-value=8.9e-09 Score=71.32 Aligned_cols=68 Identities=21% Similarity=0.272 Sum_probs=54.6
Q ss_pred cCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcCh-----HHHHHHHHHHHhhh
Q 038186 63 VQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRP-----ELVHENMLPWLAET 135 (138)
Q Consensus 63 ~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p-----~~~~~~i~~fl~~~ 135 (138)
.+.+.++++||++|+|++|++++++... .+.+..+++++++++++||++++|.. ...-+.+.+|+...
T Consensus 248 ~~~l~~i~~P~lii~g~~D~~~~~~~~~-----~~~~~~~~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~ 320 (324)
T PRK10985 248 LPLLNQIRKPTLIIHAKDDPFMTHEVIP-----KPESLPPNVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTY 320 (324)
T ss_pred HHHHhCCCCCEEEEecCCCCCCChhhCh-----HHHHhCCCeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHh
Confidence 4567899999999999999999987542 45567789999999999999998753 46666778888654
No 47
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=98.77 E-value=1.4e-08 Score=72.52 Aligned_cols=61 Identities=20% Similarity=0.302 Sum_probs=53.7
Q ss_pred CCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHhhh
Q 038186 67 PTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLAET 135 (138)
Q Consensus 67 ~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~~ 135 (138)
.++++|+|+|+|++|+++|.+.+. .+.+..|+++++++|++ ++.+.++.+...|.+||.+.
T Consensus 352 ~~i~~PvLiI~G~~D~ivP~~~a~-----~l~~~~~~~~l~~i~~~---~~~e~~~~~~~~i~~wL~~~ 412 (414)
T PRK05077 352 RRCPTPMLSGYWKNDPFSPEEDSR-----LIASSSADGKLLEIPFK---PVYRNFDKALQEISDWLEDR 412 (414)
T ss_pred cCCCCcEEEEecCCCCCCCHHHHH-----HHHHhCCCCeEEEccCC---CccCCHHHHHHHHHHHHHHH
Confidence 578999999999999999999753 66778899999999986 56789999999999999864
No 48
>PRK07868 acyl-CoA synthetase; Validated
Probab=98.74 E-value=4.7e-08 Score=76.64 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=56.3
Q ss_pred cCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEE-EEecCCCCCCCC---cChHHHHHHHHHHHhhh
Q 038186 65 LMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKL-IVLEGVRHCPHD---DRPELVHENMLPWLAET 135 (138)
Q Consensus 65 ~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~gH~~~~---e~p~~~~~~i~~fl~~~ 135 (138)
.+.+|++|+|+|||++|.+++++.+. .+.+.+|++++ ++++++||+.++ ..++.+...|.+||.+.
T Consensus 292 ~L~~i~~P~L~i~G~~D~ivp~~~~~-----~l~~~i~~a~~~~~~~~~GH~g~~~g~~a~~~~wp~i~~wl~~~ 361 (994)
T PRK07868 292 TLADITCPVLAFVGEVDDIGQPASVR-----GIRRAAPNAEVYESLIRAGHFGLVVGSRAAQQTWPTVADWVKWL 361 (994)
T ss_pred chhhCCCCEEEEEeCCCCCCCHHHHH-----HHHHhCCCCeEEEEeCCCCCEeeeechhhhhhhChHHHHHHHHh
Confidence 58999999999999999999998653 77788999987 688999999775 45688889999999764
No 49
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=98.66 E-value=4.6e-08 Score=56.80 Aligned_cols=62 Identities=26% Similarity=0.465 Sum_probs=53.7
Q ss_pred CCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHhh
Q 038186 68 TIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLAE 134 (138)
Q Consensus 68 ~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 134 (138)
+-..|+|+|.|+.|+..|.+.+. .+++.+++++++.+++.||......-.-+.+.+.+||..
T Consensus 32 ~~~~piL~l~~~~Dp~TP~~~a~-----~~~~~l~~s~lvt~~g~gHg~~~~~s~C~~~~v~~yl~~ 93 (103)
T PF08386_consen 32 PGAPPILVLGGTHDPVTPYEGAR-----AMAARLPGSRLVTVDGAGHGVYAGGSPCVDKAVDDYLLD 93 (103)
T ss_pred CCCCCEEEEecCcCCCCcHHHHH-----HHHHHCCCceEEEEeccCcceecCCChHHHHHHHHHHHc
Confidence 34699999999999999999864 888999999999999999999865556788889999864
No 50
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=98.66 E-value=4.7e-08 Score=68.02 Aligned_cols=64 Identities=27% Similarity=0.413 Sum_probs=51.4
Q ss_pred cCCCC--CCCEEEEecCCCCCCCCCCchhhhhhhhcc--cCCCcEEEEecCCCCCCCCcC-hHHHHHHHHHHHh
Q 038186 65 LMPTI--FIPVLVLWGDKDPFTPLDGPVGKYFSSLPS--KLSNVKLIVLEGVRHCPHDDR-PELVHENMLPWLA 133 (138)
Q Consensus 65 ~~~~i--~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~gH~~~~e~-p~~~~~~i~~fl~ 133 (138)
.+..+ ++|+|+|+|++|.+++.+.+. .+.+ ..++.+++++++++|.++.|. ++.+.+.|.+||.
T Consensus 263 ~~~~i~~~~P~Lii~G~~D~vv~~~~~~-----~~~~~~~~~~~~l~~~~g~~H~i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 263 DIDYIPKDIPILFIHSKGDCVCSYEGTV-----SFYNKLSISNKELHTLEDMDHVITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred hHhhCCCCCCEEEEEeCCCCccCHHHHH-----HHHHhccCCCcEEEEECCCCCCCccCCCHHHHHHHHHHHhh
Confidence 34445 799999999999999988642 3332 236789999999999999885 6899999999985
No 51
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.63 E-value=7.2e-08 Score=63.10 Aligned_cols=66 Identities=30% Similarity=0.622 Sum_probs=52.4
Q ss_pred cCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCC-cEEEEecCCCCCCCCcChHHHHHHHHHHHh
Q 038186 63 VQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSN-VKLIVLEGVRHCPHDDRPELVHENMLPWLA 133 (138)
Q Consensus 63 ~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~ 133 (138)
......+.+|+++++|++|.+.+.... ..+....++ .++++++++||+++.++|+.+++.+.+|++
T Consensus 214 ~~~~~~~~~P~l~i~g~~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~~~~ 280 (282)
T COG0596 214 RAALARITVPTLIIHGEDDPVVPAELA-----RRLAAALPNDARLVVIPGAGHFPHLEAPEAFAAALLAFLE 280 (282)
T ss_pred chhhccCCCCeEEEecCCCCcCCHHHH-----HHHHhhCCCCceEEEeCCCCCcchhhcHHHHHHHHHHHHh
Confidence 345677889999999999955555421 255566675 899999999999999999999999988554
No 52
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=98.62 E-value=2e-08 Score=68.06 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=49.5
Q ss_pred CcCCCCCCCEEEEecCCCCCCCCCCchh-hhhhhhcccC--CCcEEEEecCCCCCCCC-cChHHHHHHHHHHHhh
Q 038186 64 QLMPTIFIPVLVLWGDKDPFTPLDGPVG-KYFSSLPSKL--SNVKLIVLEGVRHCPHD-DRPELVHENMLPWLAE 134 (138)
Q Consensus 64 ~~~~~i~~Pvlii~G~~D~~~~~~~~~~-~~~~~~~~~~--~~~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~ 134 (138)
..+..+++|++++||++|...+.-. .. .......+.+ ++++++.++++||++.. +.++++.+.|.+||++
T Consensus 201 ~~l~~~~~P~ll~~g~~D~~~~~~~-~~~~~~~~~~~~l~~~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~~ 274 (274)
T TIGR03100 201 AGLERFQGPVLFILSGNDLTAQEFA-DSVLGEPAWRGALEDPGIERVEIDGADHTFSDRVWREWVAARTTEWLRR 274 (274)
T ss_pred HHHHhcCCcEEEEEcCcchhHHHHH-HHhccChhhHHHhhcCCeEEEecCCCCcccccHHHHHHHHHHHHHHHhC
Confidence 3455779999999999998753210 00 0001333333 88999999999999954 4559999999999963
No 53
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=98.62 E-value=3.3e-08 Score=64.46 Aligned_cols=66 Identities=23% Similarity=0.393 Sum_probs=52.4
Q ss_pred CCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCC-CcChHHHHHHHHHHHhhh
Q 038186 69 IFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPH-DDRPELVHENMLPWLAET 135 (138)
Q Consensus 69 i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 135 (138)
+++|+|+++|++|..+|...+. ++.+.+.+...+++++++|++||... .+....+.+.+.+|+++.
T Consensus 143 ~~~P~li~hG~~D~~Vp~~~s~-~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~ 209 (213)
T PF00326_consen 143 IKPPVLIIHGENDPRVPPSQSL-RLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKY 209 (213)
T ss_dssp GGSEEEEEEETTBSSSTTHHHH-HHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEccCCCCccCHHHHH-HHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 7899999999999999999763 45566666666699999999999665 455567888889998764
No 54
>COG1647 Esterase/lipase [General function prediction only]
Probab=98.58 E-value=2.1e-07 Score=60.24 Aligned_cols=100 Identities=19% Similarity=0.287 Sum_probs=67.8
Q ss_pred CCCCHHHHHHHHHhhhhcccCcchHHHHHHHhhCCCCCCccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhccc--
Q 038186 23 ESVDETLVEVLIFSTYIACNEEGVLDAFVSIVTGPPGPNPVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSK-- 100 (138)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~-- 100 (138)
+..+++.++...+.+- .........+..++. +....+..|..|++++.|.+|..+|.+.+. .+...
T Consensus 141 e~k~~e~~~~e~~~~~--~~~~~~~~~~~~~i~-----~~~~~~~~I~~pt~vvq~~~D~mv~~~sA~-----~Iy~~v~ 208 (243)
T COG1647 141 EGKDQEQIDKEMKSYK--DTPMTTTAQLKKLIK-----DARRSLDKIYSPTLVVQGRQDEMVPAESAN-----FIYDHVE 208 (243)
T ss_pred cCCCHHHHHHHHHHhh--cchHHHHHHHHHHHH-----HHHhhhhhcccchhheecccCCCCCHHHHH-----HHHHhcc
Confidence 3445555555442211 112233344444443 356678899999999999999999999753 33332
Q ss_pred CCCcEEEEecCCCCCCCCc-ChHHHHHHHHHHHhh
Q 038186 101 LSNVKLIVLEGVRHCPHDD-RPELVHENMLPWLAE 134 (138)
Q Consensus 101 ~~~~~~~~i~~~gH~~~~e-~p~~~~~~i~~fl~~ 134 (138)
-.+-++++++++||.+..+ ..+++.+.+..||+.
T Consensus 209 s~~KeL~~~e~SgHVIt~D~Erd~v~e~V~~FL~~ 243 (243)
T COG1647 209 SDDKELKWLEGSGHVITLDKERDQVEEDVITFLEK 243 (243)
T ss_pred CCcceeEEEccCCceeecchhHHHHHHHHHHHhhC
Confidence 2347899999999998765 679999999999963
No 55
>PLN02872 triacylglycerol lipase
Probab=98.57 E-value=1.1e-07 Score=67.57 Aligned_cols=66 Identities=18% Similarity=0.265 Sum_probs=53.6
Q ss_pred cCCCC--CCCEEEEecCCCCCCCCCCchhhhhhhhcccCCC-cEEEEecCCCCC---CCCcChHHHHHHHHHHHhhh
Q 038186 65 LMPTI--FIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSN-VKLIVLEGVRHC---PHDDRPELVHENMLPWLAET 135 (138)
Q Consensus 65 ~~~~i--~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~gH~---~~~e~p~~~~~~i~~fl~~~ 135 (138)
.+.++ ++|+++++|++|.++++.... .+.+.+++ .+++.++++||. ...|.|+.+.+.|.+|+++.
T Consensus 318 ~l~~i~~~~Pv~i~~G~~D~lv~~~dv~-----~l~~~Lp~~~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~ 389 (395)
T PLN02872 318 DLSLIPKSLPLWMGYGGTDGLADVTDVE-----HTLAELPSKPELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSL 389 (395)
T ss_pred CcccCCCCccEEEEEcCCCCCCCHHHHH-----HHHHHCCCccEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHh
Confidence 35566 589999999999999877532 66666666 688899999995 55699999999999999864
No 56
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.51 E-value=6.4e-08 Score=70.88 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=48.7
Q ss_pred ccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChH
Q 038186 62 PVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPE 122 (138)
Q Consensus 62 ~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~ 122 (138)
....+..|++|+++|+|++|.++|.+.+. .+.+.+++.+..+++++||.+++++|.
T Consensus 407 ~~~dL~~I~vPvLvV~G~~D~IvP~~sa~-----~l~~~i~~~~~~vL~~sGHi~~ienPp 462 (532)
T TIGR01838 407 VRLDLSKVKVPVYIIATREDHIAPWQSAY-----RGAALLGGPKTFVLGESGHIAGVVNPP 462 (532)
T ss_pred EecchhhCCCCEEEEeeCCCCcCCHHHHH-----HHHHHCCCCEEEEECCCCCchHhhCCC
Confidence 34678899999999999999999988643 667788899999999999999999884
No 57
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=98.36 E-value=1.2e-06 Score=65.84 Aligned_cols=70 Identities=21% Similarity=0.380 Sum_probs=57.1
Q ss_pred cCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCC-cChHHHHHHHHHHHhhh
Q 038186 65 LMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHD-DRPELVHENMLPWLAET 135 (138)
Q Consensus 65 ~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~~ 135 (138)
...++++|+|+|||+.|..++.+.+. ++++.++...-+++++++|+.||.+.- ++-..+.+.+.+|+++.
T Consensus 546 ~~~~i~~P~LliHG~~D~~v~~~q~~-~~~~aL~~~g~~~~~~~~p~e~H~~~~~~~~~~~~~~~~~~~~~~ 616 (620)
T COG1506 546 YADNIKTPLLLIHGEEDDRVPIEQAE-QLVDALKRKGKPVELVVFPDEGHGFSRPENRVKVLKEILDWFKRH 616 (620)
T ss_pred hhcccCCCEEEEeecCCccCChHHHH-HHHHHHHHcCceEEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHH
Confidence 34678999999999999999999863 456677777777999999999999875 55666778888888764
No 58
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=98.30 E-value=8.3e-06 Score=56.07 Aligned_cols=71 Identities=30% Similarity=0.527 Sum_probs=54.1
Q ss_pred ccCcCCCCCCCEEEEecCCCCCCC-CCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcCh---HHHHHHHHHHHhhh
Q 038186 62 PVQLMPTIFIPVLVLWGDKDPFTP-LDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRP---ELVHENMLPWLAET 135 (138)
Q Consensus 62 ~~~~~~~i~~Pvlii~G~~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p---~~~~~~i~~fl~~~ 135 (138)
.......+++|||+++|++|.+++ .+... +.+ -....+++++++++|+.|-+..|.+ +++.+.+.+|+...
T Consensus 220 ~~~~~~~~~~PvLll~g~~D~vv~~~~~~~-~~~--~~~~~~~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~ 294 (298)
T COG2267 220 ALRDAPAIALPVLLLQGGDDRVVDNVEGLA-RFF--ERAGSPDKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEA 294 (298)
T ss_pred chhccccccCCEEEEecCCCccccCcHHHH-HHH--HhcCCCCceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhh
Confidence 445567889999999999999999 55431 211 1235677899999999999987754 68888889998764
No 59
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.28 E-value=3.3e-06 Score=55.55 Aligned_cols=61 Identities=21% Similarity=0.259 Sum_probs=51.2
Q ss_pred CCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCC-CcEEEEecCCCCCCCCcChHHHHHHHHHHHh
Q 038186 67 PTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLS-NVKLIVLEGVRHCPHDDRPELVHENMLPWLA 133 (138)
Q Consensus 67 ~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~ 133 (138)
..+.||+.++.|++|..+..+.. ..++++.. ..++..++| |||...++.+.+.+.|.+.+.
T Consensus 173 ~pl~~pi~~~~G~~D~~vs~~~~-----~~W~~~t~~~f~l~~fdG-gHFfl~~~~~~v~~~i~~~l~ 234 (244)
T COG3208 173 APLACPIHAFGGEKDHEVSRDEL-----GAWREHTKGDFTLRVFDG-GHFFLNQQREEVLARLEQHLA 234 (244)
T ss_pred CCcCcceEEeccCcchhccHHHH-----HHHHHhhcCCceEEEecC-cceehhhhHHHHHHHHHHHhh
Confidence 67899999999999999887743 34555554 578999996 999999999999999998885
No 60
>PRK11460 putative hydrolase; Provisional
Probab=98.27 E-value=1.4e-06 Score=57.71 Aligned_cols=65 Identities=15% Similarity=0.172 Sum_probs=47.8
Q ss_pred CCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHh
Q 038186 68 TIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLA 133 (138)
Q Consensus 68 ~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~ 133 (138)
....|+++++|++|.++|.+.+. +..+.+++.-.+++++.++++||.+..+.-+.+.+.|.+++.
T Consensus 146 ~~~~pvli~hG~~D~vvp~~~~~-~~~~~L~~~g~~~~~~~~~~~gH~i~~~~~~~~~~~l~~~l~ 210 (232)
T PRK11460 146 PTATTIHLIHGGEDPVIDVAHAV-AAQEALISLGGDVTLDIVEDLGHAIDPRLMQFALDRLRYTVP 210 (232)
T ss_pred cCCCcEEEEecCCCCccCHHHHH-HHHHHHHHCCCCeEEEEECCCCCCCCHHHHHHHHHHHHHHcc
Confidence 35789999999999999998742 223344444456788999999999986666666666666654
No 61
>PRK10566 esterase; Provisional
Probab=98.26 E-value=1.3e-06 Score=58.15 Aligned_cols=67 Identities=19% Similarity=0.321 Sum_probs=46.3
Q ss_pred CcCCCC-CCCEEEEecCCCCCCCCCCchhhhhhhhccc-CC-CcEEEEecCCCCCCCCcChHHHHHHHHHHHhhh
Q 038186 64 QLMPTI-FIPVLVLWGDKDPFTPLDGPVGKYFSSLPSK-LS-NVKLIVLEGVRHCPHDDRPELVHENMLPWLAET 135 (138)
Q Consensus 64 ~~~~~i-~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~-~~-~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~~ 135 (138)
..+.++ ++|+|+|+|++|.+++.+.+. +..+.+... .+ ++.++.++++||.+. + .....+.+||++.
T Consensus 179 ~~~~~i~~~P~Lii~G~~D~~v~~~~~~-~l~~~l~~~g~~~~~~~~~~~~~~H~~~---~-~~~~~~~~fl~~~ 248 (249)
T PRK10566 179 HQLEQLADRPLLLWHGLADDVVPAAESL-RLQQALRERGLDKNLTCLWEPGVRHRIT---P-EALDAGVAFFRQH 248 (249)
T ss_pred hhhhhcCCCCEEEEEcCCCCcCCHHHHH-HHHHHHHhcCCCcceEEEecCCCCCccC---H-HHHHHHHHHHHhh
Confidence 345565 699999999999999998642 222223222 12 367788999999864 3 4568888888753
No 62
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=98.25 E-value=7.7e-07 Score=62.34 Aligned_cols=64 Identities=19% Similarity=0.295 Sum_probs=49.7
Q ss_pred cCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCC--CcEEEEecCCCCCCCCcC---hHHHHHHHHHHHhh
Q 038186 65 LMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLS--NVKLIVLEGVRHCPHDDR---PELVHENMLPWLAE 134 (138)
Q Consensus 65 ~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~gH~~~~e~---p~~~~~~i~~fl~~ 134 (138)
.+.++++|+++++|++|.++++..+. .+.+.++ +.++++++ +||...+.. ++.+.+.|.+|+.+
T Consensus 281 ~l~~i~~Pvliv~G~~D~i~~~~~~~-----~~~~~~~~~~~~~~~~~-~gH~~~~~~~~~~~~v~~~i~~wl~~ 349 (350)
T TIGR01836 281 DLKNIKMPILNIYAERDHLVPPDASK-----ALNDLVSSEDYTELSFP-GGHIGIYVSGKAQKEVPPAIGKWLQA 349 (350)
T ss_pred cHHhCCCCeEEEecCCCCcCCHHHHH-----HHHHHcCCCCeEEEEcC-CCCEEEEECchhHhhhhHHHHHHHHh
Confidence 46788999999999999999988642 5555554 35667777 699987654 47899999999875
No 63
>PRK13604 luxD acyl transferase; Provisional
Probab=98.21 E-value=1.9e-06 Score=59.04 Aligned_cols=61 Identities=16% Similarity=0.227 Sum_probs=45.8
Q ss_pred CcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccC--CCcEEEEecCCCCCCCCcChHHHHHHHHHHHhh
Q 038186 64 QLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKL--SNVKLIVLEGVRHCPHDDRPELVHENMLPWLAE 134 (138)
Q Consensus 64 ~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 134 (138)
+....+++|+|+|||+.|.++|.+.+. .+.+.+ .+.+++++||++|.+. |++ -.+++|.++
T Consensus 196 ~~~~~l~~PvLiIHG~~D~lVp~~~s~-----~l~e~~~s~~kkl~~i~Ga~H~l~-~~~----~~~~~~~~~ 258 (307)
T PRK13604 196 NKMKGLDIPFIAFTANNDSWVKQSEVI-----DLLDSIRSEQCKLYSLIGSSHDLG-ENL----VVLRNFYQS 258 (307)
T ss_pred HHHhhcCCCEEEEEcCCCCccCHHHHH-----HHHHHhccCCcEEEEeCCCccccC-cch----HHHHHHHHH
Confidence 456678899999999999999999763 454444 4799999999999986 333 234555544
No 64
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.21 E-value=4.1e-06 Score=55.54 Aligned_cols=68 Identities=16% Similarity=0.293 Sum_probs=53.0
Q ss_pred cCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCc-EEEEecCCCCCCCCcChHHHHHHHHHHHhhhc
Q 038186 63 VQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNV-KLIVLEGVRHCPHDDRPELVHENMLPWLAETF 136 (138)
Q Consensus 63 ~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~~~ 136 (138)
.+.+..+++|||+|||+.|.+++...+. ++.+.+++. +-.++.|+||.-..-.| ++.+.+..|+....
T Consensus 185 i~kI~~i~~PVLiiHgtdDevv~~sHg~-----~Lye~~k~~~epl~v~g~gH~~~~~~~-~yi~~l~~f~~~~~ 253 (258)
T KOG1552|consen 185 IEKISKITCPVLIIHGTDDEVVDFSHGK-----ALYERCKEKVEPLWVKGAGHNDIELYP-EYIEHLRRFISSVL 253 (258)
T ss_pred cCcceeccCCEEEEecccCceecccccH-----HHHHhccccCCCcEEecCCCcccccCH-HHHHHHHHHHHHhc
Confidence 4566778999999999999999999864 777777664 67788899998764444 56688888886543
No 65
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=98.12 E-value=8.3e-06 Score=52.95 Aligned_cols=61 Identities=13% Similarity=0.290 Sum_probs=47.8
Q ss_pred CCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHhh
Q 038186 66 MPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLAE 134 (138)
Q Consensus 66 ~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 134 (138)
.+.+++|.|-|.|+.|.+++...+. .+.+.+++..+..-| +||+++-..+ ..+.|.+|++.
T Consensus 159 ~~~i~~PSLHi~G~~D~iv~~~~s~-----~L~~~~~~a~vl~Hp-ggH~VP~~~~--~~~~i~~fi~~ 219 (230)
T KOG2551|consen 159 KRPLSTPSLHIFGETDTIVPSERSE-----QLAESFKDATVLEHP-GGHIVPNKAK--YKEKIADFIQS 219 (230)
T ss_pred ccCCCCCeeEEecccceeecchHHH-----HHHHhcCCCeEEecC-CCccCCCchH--HHHHHHHHHHH
Confidence 4578999999999999999999764 888899999666666 5999997664 45555555543
No 66
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=98.03 E-value=3.2e-06 Score=57.23 Aligned_cols=69 Identities=25% Similarity=0.406 Sum_probs=55.3
Q ss_pred CccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhccc--CCCcEEEEecCCCCCCCC----cChHHHHHHHHHHHhh
Q 038186 61 NPVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSK--LSNVKLIVLEGVRHCPHD----DRPELVHENMLPWLAE 134 (138)
Q Consensus 61 ~~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~gH~~~~----e~p~~~~~~i~~fl~~ 134 (138)
++...+.++++|.+|+||+.|.++.++.+. .+.+. -.+.+++++||.=|.+.. |+-+.|...|.+||++
T Consensus 237 ~le~~l~~vtvPflilHG~dD~VTDp~~Sk-----~Lye~A~S~DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~ 311 (313)
T KOG1455|consen 237 DLEKNLNEVTVPFLILHGTDDKVTDPKVSK-----ELYEKASSSDKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDE 311 (313)
T ss_pred HHHHhcccccccEEEEecCCCcccCcHHHH-----HHHHhccCCCCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHh
Confidence 456778899999999999999999999863 44443 356899999999998764 4447788888999975
No 67
>PRK11071 esterase YqiA; Provisional
Probab=98.00 E-value=7.8e-06 Score=52.62 Aligned_cols=55 Identities=16% Similarity=0.075 Sum_probs=44.5
Q ss_pred CCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHh
Q 038186 69 IFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLA 133 (138)
Q Consensus 69 i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~ 133 (138)
..+|+++|+|++|.++|.+.+. ++.+ +++++.++|++|.. ...+...+.|.+|++
T Consensus 135 ~~~~v~iihg~~De~V~~~~a~-----~~~~---~~~~~~~~ggdH~f--~~~~~~~~~i~~fl~ 189 (190)
T PRK11071 135 SPDLIWLLQQTGDEVLDYRQAV-----AYYA---ACRQTVEEGGNHAF--VGFERYFNQIVDFLG 189 (190)
T ss_pred ChhhEEEEEeCCCCcCCHHHHH-----HHHH---hcceEEECCCCcch--hhHHHhHHHHHHHhc
Confidence 6788999999999999999764 4433 45777899999988 444888899999875
No 68
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=97.97 E-value=5.7e-06 Score=54.19 Aligned_cols=60 Identities=23% Similarity=0.320 Sum_probs=41.5
Q ss_pred CCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHhh
Q 038186 70 FIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLAE 134 (138)
Q Consensus 70 ~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 134 (138)
++|++++||..|+++|.+.+. +..+.+++...+++++.+++.||-+. ....+.+.+||++
T Consensus 155 ~~pi~~~hG~~D~vvp~~~~~-~~~~~L~~~~~~v~~~~~~g~gH~i~----~~~~~~~~~~l~~ 214 (216)
T PF02230_consen 155 KTPILIIHGDEDPVVPFEWAE-KTAEFLKAAGANVEFHEYPGGGHEIS----PEELRDLREFLEK 214 (216)
T ss_dssp TS-EEEEEETT-SSSTHHHHH-HHHHHHHCTT-GEEEEEETT-SSS------HHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCcccHHHHH-HHHHHHHhcCCCEEEEEcCCCCCCCC----HHHHHHHHHHHhh
Confidence 689999999999999988642 23445666666799999999999886 4455667788765
No 69
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=97.94 E-value=3.4e-06 Score=55.26 Aligned_cols=53 Identities=21% Similarity=0.239 Sum_probs=30.6
Q ss_pred cCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccC-C-CcEEEEecCCCCCCC
Q 038186 65 LMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKL-S-NVKLIVLEGVRHCPH 117 (138)
Q Consensus 65 ~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~gH~~~ 117 (138)
.+.++++|+|+|.|++|.+.|......+.++++++.- + +.+++.+|++||++.
T Consensus 110 pvE~i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH~i~ 164 (213)
T PF08840_consen 110 PVEKIKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLSYPGAGHLIE 164 (213)
T ss_dssp -GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEEETTB-S---
T ss_pred cHHHcCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEEcCCCCceec
Confidence 3567899999999999999988764322234555533 3 478889999999863
No 70
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=97.90 E-value=2e-05 Score=51.63 Aligned_cols=68 Identities=26% Similarity=0.418 Sum_probs=42.9
Q ss_pred CCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcCh--------HHHHHHHHHHHhh
Q 038186 66 MPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRP--------ELVHENMLPWLAE 134 (138)
Q Consensus 66 ~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p--------~~~~~~i~~fl~~ 134 (138)
...+++|+++++|+.|+.++.+.. .+..+.+.+.-...+++++||++|....... +...+.+.+||++
T Consensus 141 ~~~~~~P~l~~~g~~D~~~~~~~~-~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~~~~~~~~aa~~a~~~~~~ff~~ 216 (218)
T PF01738_consen 141 APKIKAPVLILFGENDPFFPPEEV-EALEEALKAAGVDVEVHVYPGAGHGFANPSRPPYDPAAAEDAWQRTLAFFKR 216 (218)
T ss_dssp GGG--S-EEEEEETT-TTS-HHHH-HHHHHHHHCTTTTEEEEEETT--TTTTSTTSTT--HHHHHHHHHHHHHHHCC
T ss_pred hcccCCCEeecCccCCCCCChHHH-HHHHHHHHhcCCcEEEEECCCCcccccCCCCcccCHHHHHHHHHHHHHHHHh
Confidence 567899999999999999998852 2233455566678999999999998765332 3444556677664
No 71
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=97.90 E-value=3.9e-05 Score=52.82 Aligned_cols=68 Identities=28% Similarity=0.437 Sum_probs=52.6
Q ss_pred cCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcc-cCCCcEEEEecCCCCCCCCc----ChH-HHHHHHHHHHhhh
Q 038186 63 VQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPS-KLSNVKLIVLEGVRHCPHDD----RPE-LVHENMLPWLAET 135 (138)
Q Consensus 63 ~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~gH~~~~e----~p~-~~~~~i~~fl~~~ 135 (138)
...+.+|.+|+|||+..+|++++++..- .... ..|++.+.+-+.+||.-.+. +|. ..-+.|.+|++..
T Consensus 267 ~~~L~~Ir~PtLii~A~DDP~~~~~~iP-----~~~~~~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~ 340 (345)
T COG0429 267 LPLLPKIRKPTLIINAKDDPFMPPEVIP-----KLQEMLNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPF 340 (345)
T ss_pred cccccccccceEEEecCCCCCCChhhCC-----cchhcCCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHH
Confidence 4678899999999999999999996531 2222 77899999999999987776 443 5556777887653
No 72
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=97.90 E-value=1.5e-05 Score=51.71 Aligned_cols=54 Identities=22% Similarity=0.351 Sum_probs=44.6
Q ss_pred cCcCCCC--CCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcCh
Q 038186 63 VQLMPTI--FIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRP 121 (138)
Q Consensus 63 ~~~~~~i--~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p 121 (138)
.+...+| +||||-+||..|.++|.+.+. .+++.+|+-++.+++|+.|.....+-
T Consensus 190 h~aclkId~~C~VLTvhGs~D~IVPve~Ak-----efAk~i~nH~L~iIEgADHnyt~~q~ 245 (269)
T KOG4667|consen 190 HEACLKIDKQCRVLTVHGSEDEIVPVEDAK-----EFAKIIPNHKLEIIEGADHNYTGHQS 245 (269)
T ss_pred hhhhcCcCccCceEEEeccCCceeechhHH-----HHHHhccCCceEEecCCCcCccchhh
Confidence 3344444 799999999999999999863 88889999999999999998765543
No 73
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=97.89 E-value=0.00023 Score=48.30 Aligned_cols=60 Identities=23% Similarity=0.334 Sum_probs=48.7
Q ss_pred CCCCCEEEEecCCCCCCCCCCchhhhhhhhcccC--CCcEEEEecCCCCCCCCcChHHHHHHHHHHHhh
Q 038186 68 TIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKL--SNVKLIVLEGVRHCPHDDRPELVHENMLPWLAE 134 (138)
Q Consensus 68 ~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 134 (138)
+++||||++.|++.+...... .+...+ .++.+..+.+||-.++.++|..+++.++=|++.
T Consensus 244 tlkc~vllvvGd~Sp~~~~vv-------~~n~~Ldp~~ttllk~~d~g~l~~e~qP~kl~ea~~~FlqG 305 (326)
T KOG2931|consen 244 TLKCPVLLVVGDNSPHVSAVV-------ECNSKLDPTYTTLLKMADCGGLVQEEQPGKLAEAFKYFLQG 305 (326)
T ss_pred cccccEEEEecCCCchhhhhh-------hhhcccCcccceEEEEcccCCcccccCchHHHHHHHHHHcc
Confidence 677999999999988776553 333332 347888899999999999999999999999874
No 74
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=97.81 E-value=3.6e-05 Score=52.11 Aligned_cols=69 Identities=20% Similarity=0.269 Sum_probs=47.8
Q ss_pred CCCccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccC--CCcEEEEecCCCCCCCCcChHHHHHHHHHHHhh
Q 038186 59 GPNPVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKL--SNVKLIVLEGVRHCPHDDRPELVHENMLPWLAE 134 (138)
Q Consensus 59 ~~~~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 134 (138)
+.++........||||+|.|+..+...... .+...+ .++.+..+++||=.++.|+|..+++.++=|++.
T Consensus 208 R~DL~~~~~~~~c~vLlvvG~~Sp~~~~vv-------~~ns~Ldp~~ttllkv~dcGglV~eEqP~klaea~~lFlQG 278 (283)
T PF03096_consen 208 RTDLSIERPSLGCPVLLVVGDNSPHVDDVV-------EMNSKLDPTKTTLLKVADCGGLVLEEQPGKLAEAFKLFLQG 278 (283)
T ss_dssp -----SECTTCCS-EEEEEETTSTTHHHHH-------HHHHHS-CCCEEEEEETT-TT-HHHH-HHHHHHHHHHHHHH
T ss_pred cccchhhcCCCCCCeEEEEecCCcchhhHH-------HHHhhcCcccceEEEecccCCcccccCcHHHHHHHHHHHcc
Confidence 445666677778999999999987666542 232222 348899999999999999999999999999985
No 75
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=97.79 E-value=4.7e-06 Score=50.69 Aligned_cols=48 Identities=29% Similarity=0.504 Sum_probs=35.2
Q ss_pred cCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccC-CCcEEEEecCCCCC
Q 038186 63 VQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKL-SNVKLIVLEGVRHC 115 (138)
Q Consensus 63 ~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~gH~ 115 (138)
.+.+...++|+++++|++|.+++.+... .+.+.+ .+.++++++|++|+
T Consensus 97 ~~~~~~~~~pv~~i~g~~D~~~~~~~~~-----~~~~~~~~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 97 SEDLAKIRIPVLFIHGENDPLVPPEQVR-----RLYEALPGPKELYIIPGAGHF 145 (145)
T ss_dssp CHHHTTTTSEEEEEEETT-SSSHHHHHH-----HHHHHHCSSEEEEEETTS-TT
T ss_pred hhhhhccCCcEEEEEECCCCcCCHHHHH-----HHHHHcCCCcEEEEeCCCcCc
Confidence 3456678899999999999999877532 443333 46899999999996
No 76
>PLN02442 S-formylglutathione hydrolase
Probab=97.68 E-value=7.4e-05 Score=51.01 Aligned_cols=51 Identities=16% Similarity=0.125 Sum_probs=37.1
Q ss_pred CCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCC
Q 038186 67 PTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPH 117 (138)
Q Consensus 67 ~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~ 117 (138)
....+|+++++|++|.+++.......+.+.+++...+++++++|+.+|..+
T Consensus 214 ~~~~~pvli~~G~~D~~v~~~~~s~~~~~~l~~~g~~~~~~~~pg~~H~~~ 264 (283)
T PLN02442 214 NDVSATILIDQGEADKFLKEQLLPENFEEACKEAGAPVTLRLQPGYDHSYF 264 (283)
T ss_pred cccCCCEEEEECCCCccccccccHHHHHHHHHHcCCCeEEEEeCCCCccHH
Confidence 456899999999999998864211223345555556689999999999755
No 77
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=97.63 E-value=0.00018 Score=50.30 Aligned_cols=68 Identities=22% Similarity=0.086 Sum_probs=55.2
Q ss_pred ccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcE-EEE-ecCCCCCCCCcChHHHHHHHHHHHhh
Q 038186 62 PVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVK-LIV-LEGVRHCPHDDRPELVHENMLPWLAE 134 (138)
Q Consensus 62 ~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~-i~~~gH~~~~e~p~~~~~~i~~fl~~ 134 (138)
+.+.+..+++|++++.=+.|.++|++... .+.+.++.+. +++ -...||--++...+.+.+.|..||+.
T Consensus 298 l~~al~~i~~~~lv~gi~sD~lfp~~~~~-----~~~~~L~~~~~~~~i~S~~GHDaFL~e~~~~~~~i~~fL~~ 367 (368)
T COG2021 298 LTAALARIKAPVLVVGITSDWLFPPELQR-----ALAEALPAAGALREIDSPYGHDAFLVESEAVGPLIRKFLAL 367 (368)
T ss_pred HHHHHhcCccCEEEEEecccccCCHHHHH-----HHHHhccccCceEEecCCCCchhhhcchhhhhHHHHHHhhc
Confidence 34458999999999999999999999643 6666776655 544 44779999998888999999999975
No 78
>COG0400 Predicted esterase [General function prediction only]
Probab=97.55 E-value=9.2e-05 Score=48.25 Aligned_cols=59 Identities=25% Similarity=0.311 Sum_probs=43.2
Q ss_pred CCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHhh
Q 038186 70 FIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLAE 134 (138)
Q Consensus 70 ~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 134 (138)
..|+++++|+.|+++|...+ .+..+.+.+..-+++...++ .||-+..|.- +.+.+|+..
T Consensus 146 ~~pill~hG~~Dpvvp~~~~-~~l~~~l~~~g~~v~~~~~~-~GH~i~~e~~----~~~~~wl~~ 204 (207)
T COG0400 146 GTPILLSHGTEDPVVPLALA-EALAEYLTASGADVEVRWHE-GGHEIPPEEL----EAARSWLAN 204 (207)
T ss_pred CCeEEEeccCcCCccCHHHH-HHHHHHHHHcCCCEEEEEec-CCCcCCHHHH----HHHHHHHHh
Confidence 58999999999999999875 23344555566678899998 7998875544 444556654
No 79
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=97.54 E-value=0.00014 Score=47.46 Aligned_cols=66 Identities=18% Similarity=0.109 Sum_probs=50.6
Q ss_pred CcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCC--cEEEEecCCCCCCCCcChHHHHHHHHHHHhhh
Q 038186 64 QLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSN--VKLIVLEGVRHCPHDDRPELVHENMLPWLAET 135 (138)
Q Consensus 64 ~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~~ 135 (138)
..++..++|.|+|.|.+|.++|+.+ |+.+.+.+|. .++..+|++.|.-.+-.- -.-++|.+||.++
T Consensus 215 ~ki~~~~~P~LFiSGlkDelVPP~~-----Mr~Ly~~c~S~~Krl~eFP~gtHNDT~i~d-GYfq~i~dFlaE~ 282 (300)
T KOG4391|consen 215 RKIGQCRMPFLFISGLKDELVPPVM-----MRQLYELCPSRTKRLAEFPDGTHNDTWICD-GYFQAIEDFLAEV 282 (300)
T ss_pred hhhccccCceEEeecCccccCCcHH-----HHHHHHhCchhhhhheeCCCCccCceEEec-cHHHHHHHHHHHh
Confidence 3445668999999999999999985 3466666665 588999999998665553 4557888898765
No 80
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=97.53 E-value=0.00072 Score=47.76 Aligned_cols=62 Identities=15% Similarity=0.122 Sum_probs=48.8
Q ss_pred CCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCC-cEEEEecCCCCCCCCcChHHHHHHHHHHHhhh
Q 038186 66 MPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSN-VKLIVLEGVRHCPHDDRPELVHENMLPWLAET 135 (138)
Q Consensus 66 ~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~~ 135 (138)
..++++|.++|.|..|.++.++.+. -+...+|+ ..+..+||+||..-. ..+.+.|..|+...
T Consensus 258 ~~rL~~PK~ii~atgDeFf~pD~~~-----~y~d~L~G~K~lr~vPN~~H~~~~---~~~~~~l~~f~~~~ 320 (367)
T PF10142_consen 258 RDRLTMPKYIINATGDEFFVPDSSN-----FYYDKLPGEKYLRYVPNAGHSLIG---SDVVQSLRAFYNRI 320 (367)
T ss_pred HHhcCccEEEEecCCCceeccCchH-----HHHhhCCCCeeEEeCCCCCcccch---HHHHHHHHHHHHHH
Confidence 3566999999999999999999763 44555555 678899999999876 56677788888653
No 81
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=97.50 E-value=0.00019 Score=52.34 Aligned_cols=64 Identities=16% Similarity=0.188 Sum_probs=48.0
Q ss_pred CCCEEEEecCCCCCCCCCCchhhhhhhh--------------------------cccCC-----CcEEEEecCCCCCCCC
Q 038186 70 FIPVLVLWGDKDPFTPLDGPVGKYFSSL--------------------------PSKLS-----NVKLIVLEGVRHCPHD 118 (138)
Q Consensus 70 ~~Pvlii~G~~D~~~~~~~~~~~~~~~~--------------------------~~~~~-----~~~~~~i~~~gH~~~~ 118 (138)
.++||+..|+.|.+++.... .++++.+ .+... +..++.+.+|||+++.
T Consensus 364 gikVLiYnGd~D~icn~~Gt-~~wi~~L~w~g~~~f~~a~~~~w~~~~~~v~G~vk~~~~~~~~~l~~~~V~~AGH~vp~ 442 (462)
T PTZ00472 364 GVRVMIYAGDMDFICNWIGN-KAWTLALQWPGNAEFNAAPDVPFSAVDGRWAGLVRSAASNTSSGFSFVQVYNAGHMVPM 442 (462)
T ss_pred CceEEEEECCcCeecCcHhH-HHHHHhCCCCCccchhhcCccccEecCCEeceEEEEEecccCCCeEEEEECCCCccChh
Confidence 48999999999988876532 1111111 11123 5778888999999999
Q ss_pred cChHHHHHHHHHHHhh
Q 038186 119 DRPELVHENMLPWLAE 134 (138)
Q Consensus 119 e~p~~~~~~i~~fl~~ 134 (138)
++|+.+.+.|..|+..
T Consensus 443 d~P~~~~~~i~~fl~~ 458 (462)
T PTZ00472 443 DQPAVALTMINRFLRN 458 (462)
T ss_pred hHHHHHHHHHHHHHcC
Confidence 9999999999999975
No 82
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=97.34 E-value=3e-05 Score=50.73 Aligned_cols=50 Identities=26% Similarity=0.478 Sum_probs=30.8
Q ss_pred CCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCC-cEEEEecCCCCCCCCcCh
Q 038186 66 MPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSN-VKLIVLEGVRHCPHDDRP 121 (138)
Q Consensus 66 ~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~gH~~~~e~p 121 (138)
-..|++|+|-|+|.+|.+++++.+. .+.+.+.+ ..++..++ ||.++...+
T Consensus 157 ~~~i~iPtlHv~G~~D~~~~~~~s~-----~L~~~~~~~~~v~~h~g-GH~vP~~~~ 207 (212)
T PF03959_consen 157 EPKISIPTLHVIGENDPVVPPERSE-----ALAEMFDPDARVIEHDG-GHHVPRKKE 207 (212)
T ss_dssp -TT---EEEEEEETT-SSS-HHHHH-----HHHHHHHHHEEEEEESS-SSS----HH
T ss_pred cccCCCCeEEEEeCCCCCcchHHHH-----HHHHhccCCcEEEEECC-CCcCcCChh
Confidence 4567999999999999999977543 66666666 77888875 899986654
No 83
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=97.32 E-value=0.00064 Score=45.89 Aligned_cols=69 Identities=25% Similarity=0.376 Sum_probs=48.8
Q ss_pred ccCcCCCCC-CCEEEEecCCCCCCCCCCchhhhhhhhcccCC--CcEEEEecCCCCCCCCcChH---HHHHHHHHHHhhh
Q 038186 62 PVQLMPTIF-IPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLS--NVKLIVLEGVRHCPHDDRPE---LVHENMLPWLAET 135 (138)
Q Consensus 62 ~~~~~~~i~-~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~gH~~~~e~p~---~~~~~i~~fl~~~ 135 (138)
....+..+. .|+++++|..|..+|...+. .+..... ......+++++|......+. +....+.+|+.+.
T Consensus 223 ~~~~~~~i~~~P~l~~~G~~D~~vp~~~~~-----~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~~ 297 (299)
T COG1073 223 PFDDAEKISPRPVLLVHGERDEVVPLRDAE-----DLYEAARERPKKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLERH 297 (299)
T ss_pred chhhHhhcCCcceEEEecCCCcccchhhhH-----HHHhhhccCCceEEEecCCccccccCccHHHHHHHHHHHHHHHHh
Confidence 334455555 79999999999999999763 3333222 46777888999998864443 6777788888764
No 84
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=97.30 E-value=0.00042 Score=44.35 Aligned_cols=62 Identities=19% Similarity=0.305 Sum_probs=47.8
Q ss_pred cCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHh
Q 038186 65 LMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLA 133 (138)
Q Consensus 65 ~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~ 133 (138)
.+....+|+++|+|+.|.+++....+ ++.+. -..+++.+++++||.+-.. +.+.+.|.+|+.
T Consensus 144 ~l~P~P~~~lvi~g~~Ddvv~l~~~l-----~~~~~-~~~~~i~i~~a~HFF~gKl-~~l~~~i~~~l~ 205 (210)
T COG2945 144 FLAPCPSPGLVIQGDADDVVDLVAVL-----KWQES-IKITVITIPGADHFFHGKL-IELRDTIADFLE 205 (210)
T ss_pred hccCCCCCceeEecChhhhhcHHHHH-----HhhcC-CCCceEEecCCCceecccH-HHHHHHHHHHhh
Confidence 45566789999999999888877533 44444 4578889999999998655 568888999985
No 85
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=97.26 E-value=0.00011 Score=50.30 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=14.1
Q ss_pred CccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCc----EEEEecCCCCCCCCcCh----HHHHHHHHHHH
Q 038186 61 NPVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNV----KLIVLEGVRHCPHDDRP----ELVHENMLPWL 132 (138)
Q Consensus 61 ~~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~gH~~~~e~p----~~~~~~i~~fl 132 (138)
.+...+..+.+|+|++.|++|..+|...-....+++++...+.. .-.+||||+|.+-.+.. +.+.+.+..||
T Consensus 223 ~l~~tfG~v~~plLvl~Sg~DEyvP~~vdk~~Ll~rw~~a~~~~~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~fl 302 (303)
T PF08538_consen 223 RLKKTFGKVSKPLLVLYSGKDEYVPPWVDKEALLERWKAATNPKIWSPLSGIIPGASHNVSGPSQAEAREWLVERVVKFL 302 (303)
T ss_dssp HHHHTGGG--S-EEEEEE--TT----------------------------------------------------------
T ss_pred HHHHHhccCCCceEEEecCCCceecccccccccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 34567788899999999999999998764333345555544422 24589999999875433 24666666666
No 86
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=97.20 E-value=0.00026 Score=50.60 Aligned_cols=63 Identities=22% Similarity=0.367 Sum_probs=42.5
Q ss_pred CCCEEEEecCCCCCCCCCCchhhhhh----------------------hhcccCCCcEEEEecCCCCCCCCcChHHHHHH
Q 038186 70 FIPVLVLWGDKDPFTPLDGPVGKYFS----------------------SLPSKLSNVKLIVLEGVRHCPHDDRPELVHEN 127 (138)
Q Consensus 70 ~~Pvlii~G~~D~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~ 127 (138)
.++|||.+|..|.+++.-... .+++ -+.+...+..++.|.+|||+++.++|+...+.
T Consensus 330 ~irVLiy~Gd~D~i~n~~Gt~-~~i~~L~w~~~~~f~~~~~~~~~~~~G~~k~~~~ltf~~V~~AGHmvP~dqP~~a~~m 408 (415)
T PF00450_consen 330 GIRVLIYNGDLDLICNFLGTE-RWIDNLNWSGKDGFRQWPRKVNGQVAGYVKQYGNLTFVTVRGAGHMVPQDQPEAALQM 408 (415)
T ss_dssp T-EEEEEEETT-SSS-HHHHH-HHHHCTECTEEEEEEEEEEETTCSEEEEEEEETTEEEEEETT--SSHHHHSHHHHHHH
T ss_pred cceeEEeccCCCEEEEeccch-hhhhccccCcccccccccccccccccceeEEeccEEEEEEcCCcccChhhCHHHHHHH
Confidence 389999999999998743210 0011 11223445778999999999999999999999
Q ss_pred HHHHHh
Q 038186 128 MLPWLA 133 (138)
Q Consensus 128 i~~fl~ 133 (138)
+..|++
T Consensus 409 ~~~fl~ 414 (415)
T PF00450_consen 409 FRRFLK 414 (415)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 999985
No 87
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=97.02 E-value=0.0022 Score=42.04 Aligned_cols=70 Identities=17% Similarity=0.293 Sum_probs=45.6
Q ss_pred CcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccC-CCcEEEEecCCCCCCC-----CcChH------HHHHHHHHH
Q 038186 64 QLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKL-SNVKLIVLEGVRHCPH-----DDRPE------LVHENMLPW 131 (138)
Q Consensus 64 ~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~gH~~~-----~e~p~------~~~~~i~~f 131 (138)
+....+++|+|++.|+.|.++|+..- .++.+.+.+.. -+..++++++.||..+ .+.|+ +..+...+|
T Consensus 158 ~D~~~vk~Pilfl~ae~D~~~p~~~v-~~~ee~lk~~~~~~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~W 236 (242)
T KOG3043|consen 158 ADIANVKAPILFLFAELDEDVPPKDV-KAWEEKLKENPAVGSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISW 236 (242)
T ss_pred hHHhcCCCCEEEEeecccccCCHHHH-HHHHHHHhcCcccceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHH
Confidence 45567899999999999999999863 12222333221 1256999999999765 34553 344445566
Q ss_pred Hhh
Q 038186 132 LAE 134 (138)
Q Consensus 132 l~~ 134 (138)
+..
T Consensus 237 f~~ 239 (242)
T KOG3043|consen 237 FKH 239 (242)
T ss_pred HHH
Confidence 554
No 88
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=97.01 E-value=0.00045 Score=49.43 Aligned_cols=65 Identities=14% Similarity=0.103 Sum_probs=49.2
Q ss_pred cCCCCC-CCEEEEecCCCCCCCCCCchhhhhhhhccc---CCC--cEEEEecCCCCCCCCc---ChHHHHHHHHHHHhh
Q 038186 65 LMPTIF-IPVLVLWGDKDPFTPLDGPVGKYFSSLPSK---LSN--VKLIVLEGVRHCPHDD---RPELVHENMLPWLAE 134 (138)
Q Consensus 65 ~~~~i~-~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~---~~~--~~~~~i~~~gH~~~~e---~p~~~~~~i~~fl~~ 134 (138)
.+++|+ +|++.|.|+.|.++++..+. .+... +|. ......+++||+-..- -.+.+...|.+||.+
T Consensus 332 dl~~I~~~pll~V~ge~D~I~p~~qt~-----aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~ 405 (406)
T TIGR01849 332 DPGAITRVALLTVEGENDDISGLGQTK-----AALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRR 405 (406)
T ss_pred cHHHCcccceEEEeccCCCcCCHHHhH-----HHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHh
Confidence 467898 99999999999999999763 44444 342 3466777899986543 346788899999875
No 89
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=96.86 E-value=0.0041 Score=44.42 Aligned_cols=69 Identities=16% Similarity=0.224 Sum_probs=50.6
Q ss_pred ccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcC----hH-HHHHHHHHHHhh
Q 038186 62 PVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDR----PE-LVHENMLPWLAE 134 (138)
Q Consensus 62 ~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~----p~-~~~~~i~~fl~~ 134 (138)
....+.+|++|+++|+..+|+++|+...- . ......|++-+++-..+||.-.+|. +. .+.+.+.+|+..
T Consensus 314 s~~~v~~I~VP~L~ina~DDPv~p~~~ip-~---~~~~~np~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~~~ 387 (409)
T KOG1838|consen 314 SSNYVDKIKVPLLCINAADDPVVPEEAIP-I---DDIKSNPNVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEFLGN 387 (409)
T ss_pred hhhhcccccccEEEEecCCCCCCCcccCC-H---HHHhcCCcEEEEEeCCCceeeeeccCCCccchhHHHHHHHHHHH
Confidence 34678899999999999999999997431 1 3345678888889889999988876 22 333336666654
No 90
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=96.82 E-value=0.00043 Score=43.86 Aligned_cols=47 Identities=28% Similarity=0.550 Sum_probs=35.7
Q ss_pred CCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcC
Q 038186 68 TIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDR 120 (138)
Q Consensus 68 ~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~ 120 (138)
.+.+|.++|.+++|+++|.+.+. .+++.. +++++.++++||+...+-
T Consensus 112 ~l~~~~~viaS~nDp~vp~~~a~-----~~A~~l-~a~~~~~~~~GHf~~~~G 158 (171)
T PF06821_consen 112 PLPFPSIVIASDNDPYVPFERAQ-----RLAQRL-GAELIILGGGGHFNAASG 158 (171)
T ss_dssp HHHCCEEEEEETTBSSS-HHHHH-----HHHHHH-T-EEEEETS-TTSSGGGT
T ss_pred ccCCCeEEEEcCCCCccCHHHHH-----HHHHHc-CCCeEECCCCCCcccccC
Confidence 34689999999999999998653 666666 799999999999986543
No 91
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.79 E-value=0.009 Score=39.88 Aligned_cols=69 Identities=25% Similarity=0.385 Sum_probs=48.6
Q ss_pred CCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcC-----------hHHHHHHHHHHHhh
Q 038186 66 MPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDR-----------PELVHENMLPWLAE 134 (138)
Q Consensus 66 ~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~-----------p~~~~~~i~~fl~~ 134 (138)
..++++|+++++|+.|..+|..... .+.+.+.....+.+++++++++|....+. .+.-.+.+.+|+++
T Consensus 154 ~~~~~~pvl~~~~~~D~~~p~~~~~-~~~~~~~~~~~~~~~~~y~ga~H~F~~~~~~~~~~y~~~aa~~a~~~~~~ff~~ 232 (236)
T COG0412 154 APKIKVPVLLHLAGEDPYIPAADVD-ALAAALEDAGVKVDLEIYPGAGHGFANDRADYHPGYDAAAAEDAWQRVLAFFKR 232 (236)
T ss_pred cccccCcEEEEecccCCCCChhHHH-HHHHHHHhcCCCeeEEEeCCCccccccCCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 4588999999999999999998531 22233334434688999999999877442 14555666777765
Q ss_pred h
Q 038186 135 T 135 (138)
Q Consensus 135 ~ 135 (138)
.
T Consensus 233 ~ 233 (236)
T COG0412 233 L 233 (236)
T ss_pred h
Confidence 4
No 92
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=96.75 E-value=0.0032 Score=42.84 Aligned_cols=63 Identities=22% Similarity=0.308 Sum_probs=45.4
Q ss_pred CCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHhhhc
Q 038186 66 MPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLAETF 136 (138)
Q Consensus 66 ~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~~~ 136 (138)
+-...+|-++|....|..- .+...++ .-..-.+.+++.|||+++.+.|..++..+..|..++.
T Consensus 266 Fl~~p~~klLilAg~d~LD-kdLtiGQ-------MQGk~Q~~vL~~~GH~v~ED~P~kva~~~~~f~~Rn~ 328 (343)
T KOG2564|consen 266 FLGLPVPKLLILAGVDRLD-KDLTIGQ-------MQGKFQLQVLPLCGHFVHEDSPHKVAECLCVFWIRNR 328 (343)
T ss_pred hhCCCccceeEEecccccC-cceeeee-------eccceeeeeecccCceeccCCcchHHHHHHHHHhhhc
Confidence 3455688888888777533 3322211 1234578899999999999999999999999998753
No 93
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=96.69 E-value=0.0048 Score=47.91 Aligned_cols=71 Identities=18% Similarity=0.182 Sum_probs=47.2
Q ss_pred ccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCC-CcChHHHHHHHHHHHhh
Q 038186 62 PVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPH-DDRPELVHENMLPWLAE 134 (138)
Q Consensus 62 ~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~ 134 (138)
+...+.+|++|+++|+|..|..++...+. +.++.+.+.-...++.+.+ .||..+ ...+..+.+.+.+|++.
T Consensus 447 ~~~~~~kIkvPvLlIhGw~D~~V~~~~s~-~ly~aL~~~g~pkkL~l~~-g~H~~~~~~~~~d~~e~~~~Wfd~ 518 (767)
T PRK05371 447 YLKDADKIKASVLVVHGLNDWNVKPKQVY-QWWDALPENGVPKKLFLHQ-GGHVYPNNWQSIDFRDTMNAWFTH 518 (767)
T ss_pred HhhHhhCCCCCEEEEeeCCCCCCChHHHH-HHHHHHHhcCCCeEEEEeC-CCccCCCchhHHHHHHHHHHHHHh
Confidence 33556789999999999999999876542 2233444433456676655 589654 33456667777777754
No 94
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=96.67 E-value=0.0056 Score=42.69 Aligned_cols=63 Identities=21% Similarity=0.305 Sum_probs=45.4
Q ss_pred CCCEEEEecCCCCCCCCCCchhhhhhhh--------------------cccCCC-cEEEEecCCCCCCCCcChHHHHHHH
Q 038186 70 FIPVLVLWGDKDPFTPLDGPVGKYFSSL--------------------PSKLSN-VKLIVLEGVRHCPHDDRPELVHENM 128 (138)
Q Consensus 70 ~~Pvlii~G~~D~~~~~~~~~~~~~~~~--------------------~~~~~~-~~~~~i~~~gH~~~~e~p~~~~~~i 128 (138)
.++|||..|+.|.+++.-.. ..+.+.+ .+...+ .+++.+-+|||+++ .+|+...+.+
T Consensus 233 ~i~VliY~Gd~D~icn~~g~-~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~~~ltf~~V~~AGHmV~-~qP~~al~m~ 310 (319)
T PLN02213 233 GYRSLIYSGDHDIAVPFLAT-QAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE-YRPNETFIMF 310 (319)
T ss_pred CceEEEEECCcCeeCCcHhH-HHHHHhcCCCCCCCCccccCCCEeeeEEEEecCcceEEEEcCCCCCCC-cCHHHHHHHH
Confidence 47999999999988876432 1111111 112233 77788889999997 5999999999
Q ss_pred HHHHhh
Q 038186 129 LPWLAE 134 (138)
Q Consensus 129 ~~fl~~ 134 (138)
..|+..
T Consensus 311 ~~fi~~ 316 (319)
T PLN02213 311 QRWISG 316 (319)
T ss_pred HHHHcC
Confidence 999975
No 95
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=96.66 E-value=0.0035 Score=39.25 Aligned_cols=67 Identities=18% Similarity=0.271 Sum_probs=47.4
Q ss_pred cCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCC-C---------cChHHHHHHHHHHH
Q 038186 63 VQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPH-D---------DRPELVHENMLPWL 132 (138)
Q Consensus 63 ~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~-~---------e~p~~~~~~i~~fl 132 (138)
.+.+..+++||+|.+|+.|.+-..+.- .-....+..+++++.++.|-+- . ++-...++.|..|+
T Consensus 135 t~HL~gl~tPtli~qGtrD~fGtr~~V------a~y~ls~~iev~wl~~adHDLkp~k~vsgls~~~hL~~~A~~va~~~ 208 (213)
T COG3571 135 TEHLTGLKTPTLITQGTRDEFGTRDEV------AGYALSDPIEVVWLEDADHDLKPRKLVSGLSTADHLKTLAEQVAGWA 208 (213)
T ss_pred hhhccCCCCCeEEeecccccccCHHHH------HhhhcCCceEEEEeccCccccccccccccccHHHHHHHHHHHHHHHH
Confidence 367888999999999999988776631 1123456789999999999753 2 22245666777777
Q ss_pred hhh
Q 038186 133 AET 135 (138)
Q Consensus 133 ~~~ 135 (138)
..+
T Consensus 209 ~~l 211 (213)
T COG3571 209 RRL 211 (213)
T ss_pred hhc
Confidence 654
No 96
>PRK10162 acetyl esterase; Provisional
Probab=96.64 E-value=0.0048 Score=42.91 Aligned_cols=62 Identities=11% Similarity=0.188 Sum_probs=45.1
Q ss_pred CCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCC-----cChHHHHHHHHHHHhhh
Q 038186 71 IPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHD-----DRPELVHENMLPWLAET 135 (138)
Q Consensus 71 ~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~-----e~p~~~~~~i~~fl~~~ 135 (138)
.|+++++|+.|++.+... .+.+++.+..-.++++.++|..|.... +......+.+.+|+.+.
T Consensus 249 Pp~~i~~g~~D~L~de~~---~~~~~L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~ 315 (318)
T PRK10162 249 PPCFIAGAEFDPLLDDSR---LLYQTLAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQ 315 (318)
T ss_pred CCeEEEecCCCcCcChHH---HHHHHHHHcCCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHH
Confidence 699999999999876543 345566666667999999999996532 23456666777787654
No 97
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=96.60 E-value=0.0041 Score=41.39 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=49.1
Q ss_pred CCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCC-cChHHHHHHHHHHH
Q 038186 68 TIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHD-DRPELVHENMLPWL 132 (138)
Q Consensus 68 ~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl 132 (138)
...+|-|.|+++.|.+++.+.- .+..+..++..-+++.+.+++++|.-|+ .+|++..+.+.+|+
T Consensus 176 ~~~~p~lylYS~~D~l~~~~~v-e~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 176 PSRCPRLYLYSKADPLIPWRDV-EEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred CCCCCeEEecCCCCcCcCHHHH-HHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 4468999999999999999852 2233344444445888899999999875 78999999998874
No 98
>PLN02209 serine carboxypeptidase
Probab=96.45 E-value=0.011 Score=42.95 Aligned_cols=63 Identities=22% Similarity=0.339 Sum_probs=46.5
Q ss_pred CCCEEEEecCCCCCCCCCCchhhhhhhh--------------------cccCCC-cEEEEecCCCCCCCCcChHHHHHHH
Q 038186 70 FIPVLVLWGDKDPFTPLDGPVGKYFSSL--------------------PSKLSN-VKLIVLEGVRHCPHDDRPELVHENM 128 (138)
Q Consensus 70 ~~Pvlii~G~~D~~~~~~~~~~~~~~~~--------------------~~~~~~-~~~~~i~~~gH~~~~e~p~~~~~~i 128 (138)
.++||+..|+.|.+++.-... .+.+.+ .+...+ .+++.+-+|||+++ .+|+.....+
T Consensus 351 girVLiY~GD~D~icn~~Gte-~wi~~L~w~~~~~~~~w~~~~q~aG~vk~y~n~Ltfv~V~~AGHmVp-~qP~~al~m~ 428 (437)
T PLN02209 351 GYRSLIFSGDHDITMPFQATQ-AWIKSLNYSIIDDWRPWMIKGQIAGYTRTYSNKMTFATVKGGGHTAE-YLPEESSIMF 428 (437)
T ss_pred CceEEEEECCccccCCcHhHH-HHHHhcCCccCCCeeeeEECCEeeeEEEEeCCceEEEEEcCCCCCcC-cCHHHHHHHH
Confidence 479999999999998775421 111111 122444 77888999999997 6999999999
Q ss_pred HHHHhh
Q 038186 129 LPWLAE 134 (138)
Q Consensus 129 ~~fl~~ 134 (138)
..|+..
T Consensus 429 ~~fi~~ 434 (437)
T PLN02209 429 QRWISG 434 (437)
T ss_pred HHHHcC
Confidence 999965
No 99
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=96.44 E-value=0.0061 Score=44.37 Aligned_cols=64 Identities=23% Similarity=0.353 Sum_probs=46.9
Q ss_pred CCEEEEecCCCCCCCCCCchhhhhhhh------------c---------ccCCCcEEEEecCCCCCCCCcChHHHHHHHH
Q 038186 71 IPVLVLWGDKDPFTPLDGPVGKYFSSL------------P---------SKLSNVKLIVLEGVRHCPHDDRPELVHENML 129 (138)
Q Consensus 71 ~Pvlii~G~~D~~~~~~~~~~~~~~~~------------~---------~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~ 129 (138)
.+++|..|+.|.++|.-... .+.+.+ . +...+..+..+.||||+++.++|+.....+.
T Consensus 364 ~rvliysGD~D~~~p~~gt~-~~i~~L~~~~~~~~~pW~~~~~qvaG~~~~Y~~ltf~tVrGaGH~VP~~~p~~al~m~~ 442 (454)
T KOG1282|consen 364 YRVLIYSGDHDLVVPFLGTQ-AWIKSLNLSITDEWRPWYHKGGQVAGYTKTYGGLTFATVRGAGHMVPYDKPESALIMFQ 442 (454)
T ss_pred eEEEEEeCCcceeCcchhhH-HHHHhccCccccCccCCccCCCceeeeEEEecCEEEEEEeCCcccCCCCCcHHHHHHHH
Confidence 79999999999999876531 111111 1 1122345578889999999999999999999
Q ss_pred HHHhhh
Q 038186 130 PWLAET 135 (138)
Q Consensus 130 ~fl~~~ 135 (138)
.|+...
T Consensus 443 ~fl~g~ 448 (454)
T KOG1282|consen 443 RFLNGQ 448 (454)
T ss_pred HHHcCC
Confidence 999764
No 100
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=96.43 E-value=0.0056 Score=42.87 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=47.4
Q ss_pred CCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCC-CCcChHHHHHHHHHHHh
Q 038186 71 IPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCP-HDDRPELVHENMLPWLA 133 (138)
Q Consensus 71 ~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~ 133 (138)
-.+.+|.+++|.++|.+... .+.+..|++++..++| ||.- .+-+.+.|.+.|.+-++
T Consensus 290 ~~ii~V~A~~DaYVPr~~v~-----~Lq~~WPGsEvR~l~g-GHVsA~L~~q~~fR~AI~Daf~ 347 (348)
T PF09752_consen 290 SAIIFVAAKNDAYVPRHGVL-----SLQEIWPGSEVRYLPG-GHVSAYLLHQEAFRQAIYDAFE 347 (348)
T ss_pred CcEEEEEecCceEechhhcc-----hHHHhCCCCeEEEecC-CcEEEeeechHHHHHHHHHHhh
Confidence 46789999999999987542 8888999999999987 9984 56777899999987664
No 101
>PRK10115 protease 2; Provisional
Probab=96.39 E-value=0.012 Score=45.29 Aligned_cols=52 Identities=21% Similarity=0.247 Sum_probs=39.9
Q ss_pred CCCCCCC-EEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEe---cCCCCCCCC
Q 038186 66 MPTIFIP-VLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVL---EGVRHCPHD 118 (138)
Q Consensus 66 ~~~i~~P-vlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~gH~~~~ 118 (138)
+.+++.| +|+++|.+|.-+++..+ .++..++++...+.+++++ +++||.-.-
T Consensus 601 v~~~~~P~lLi~~g~~D~RV~~~~~-~k~~a~Lr~~~~~~~~vl~~~~~~~GHg~~~ 656 (686)
T PRK10115 601 VTAQAYPHLLVTTGLHDSQVQYWEP-AKWVAKLRELKTDDHLLLLCTDMDSGHGGKS 656 (686)
T ss_pred cCccCCCceeEEecCCCCCcCchHH-HHHHHHHHhcCCCCceEEEEecCCCCCCCCc
Confidence 4556889 56679999999999986 4566677766666788888 899999443
No 102
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=96.39 E-value=0.013 Score=42.65 Aligned_cols=64 Identities=20% Similarity=0.298 Sum_probs=46.4
Q ss_pred CCCEEEEecCCCCCCCCCCchhhhhhhh--------------------cccCCC-cEEEEecCCCCCCCCcChHHHHHHH
Q 038186 70 FIPVLVLWGDKDPFTPLDGPVGKYFSSL--------------------PSKLSN-VKLIVLEGVRHCPHDDRPELVHENM 128 (138)
Q Consensus 70 ~~Pvlii~G~~D~~~~~~~~~~~~~~~~--------------------~~~~~~-~~~~~i~~~gH~~~~e~p~~~~~~i 128 (138)
.++||+..|+.|.+++..... .+.+.+ .+...+ .+++.+-+|||+++ .+|+.....+
T Consensus 347 ~irVLiY~Gd~D~icn~~Gt~-~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~n~ltfv~V~~AGHmVp-~qP~~al~m~ 424 (433)
T PLN03016 347 GYRSLIYSGDHDIAVPFLATQ-AWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE-YRPNETFIMF 424 (433)
T ss_pred CceEEEEECCccccCCcHhHH-HHHHhCCCCCCCCcccccCCCEeeeEEEEeCCceEEEEEcCCCCCCC-CCHHHHHHHH
Confidence 479999999999988776421 111111 112233 67788889999997 5999999999
Q ss_pred HHHHhhh
Q 038186 129 LPWLAET 135 (138)
Q Consensus 129 ~~fl~~~ 135 (138)
..|+...
T Consensus 425 ~~Fi~~~ 431 (433)
T PLN03016 425 QRWISGQ 431 (433)
T ss_pred HHHHcCC
Confidence 9999753
No 103
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=96.34 E-value=0.016 Score=39.42 Aligned_cols=48 Identities=17% Similarity=0.118 Sum_probs=35.3
Q ss_pred CCCCEEEEecCCCCCCCC-CCchhhhhhhhcccCCCcEEEEecCCCCCCC
Q 038186 69 IFIPVLVLWGDKDPFTPL-DGPVGKYFSSLPSKLSNVKLIVLEGVRHCPH 117 (138)
Q Consensus 69 i~~Pvlii~G~~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~ 117 (138)
...|+++++|+.|+.++. ..+ ..+.+.+++.--.+++..+||++|...
T Consensus 210 ~~~plli~~G~~D~~v~~~~~~-~~~~~~l~~~g~~v~~~~~~g~~H~f~ 258 (275)
T TIGR02821 210 RHSTILIDQGTADQFLDEQLRP-DAFEQACRAAGQALTLRRQAGYDHSYY 258 (275)
T ss_pred cCCCeeEeecCCCcccCccccH-HHHHHHHHHcCCCeEEEEeCCCCccch
Confidence 457999999999999998 332 223345555555688999999999764
No 104
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=96.07 E-value=0.0037 Score=43.62 Aligned_cols=65 Identities=23% Similarity=0.287 Sum_probs=40.4
Q ss_pred CccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCC-CcEEEEecCCCCCCCCcChHHH-HHHHHHHHhh
Q 038186 61 NPVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLS-NVKLIVLEGVRHCPHDDRPELV-HENMLPWLAE 134 (138)
Q Consensus 61 ~~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~gH~~~~e~p~~~-~~~i~~fl~~ 134 (138)
+.......|++|+++-.|-.|.++|+.... ...+.++ ..+++++|..||... ..+ .+...+||.+
T Consensus 253 D~~nfA~ri~~pvl~~~gl~D~~cPP~t~f-----A~yN~i~~~K~l~vyp~~~He~~----~~~~~~~~~~~l~~ 319 (320)
T PF05448_consen 253 DAVNFARRIKCPVLFSVGLQDPVCPPSTQF-----AAYNAIPGPKELVVYPEYGHEYG----PEFQEDKQLNFLKE 319 (320)
T ss_dssp -HHHHGGG--SEEEEEEETT-SSS-HHHHH-----HHHCC--SSEEEEEETT--SSTT----HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCCEEEEEecCCCCCCchhHH-----HHHhccCCCeeEEeccCcCCCch----hhHHHHHHHHHHhc
Confidence 344556788999999999999999999532 3334443 479999999999654 333 5666777764
No 105
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=96.02 E-value=0.0058 Score=45.52 Aligned_cols=47 Identities=15% Similarity=0.175 Sum_probs=35.7
Q ss_pred CcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCC-CcEEEEecCCCCCC
Q 038186 64 QLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLS-NVKLIVLEGVRHCP 116 (138)
Q Consensus 64 ~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~gH~~ 116 (138)
-.+.+|+||+++|.|..|.++|.+.+. +....+. +.+++..+ +||.-
T Consensus 435 idL~~I~~Pvl~va~~~DHIvPw~s~~-----~~~~l~gs~~~fvl~~-gGHIg 482 (560)
T TIGR01839 435 IDLKKVKCDSFSVAGTNDHITPWDAVY-----RSALLLGGKRRFVLSN-SGHIQ 482 (560)
T ss_pred echhcCCCCeEEEecCcCCcCCHHHHH-----HHHHHcCCCeEEEecC-CCccc
Confidence 357899999999999999999999754 5555443 46666665 69974
No 106
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=95.94 E-value=0.022 Score=39.25 Aligned_cols=64 Identities=16% Similarity=0.140 Sum_probs=43.8
Q ss_pred CCCCCEEEEecCCCCCCCCCCchhhhhhhhcccC-CCcEEEEecCCCCCCCC-cChHHHHHHHHHHH
Q 038186 68 TIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKL-SNVKLIVLEGVRHCPHD-DRPELVHENMLPWL 132 (138)
Q Consensus 68 ~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl 132 (138)
..++|++|.+|..|.++|.... .++.+++.+.- .+++++.+++.+|.... ..-......|.+-+
T Consensus 217 ~P~~Pv~i~~g~~D~vvP~~~~-~~l~~~~c~~G~a~V~~~~~~~~~H~~~~~~~~~~a~~Wl~~rf 282 (290)
T PF03583_consen 217 TPTVPVLIYQGTADEVVPPADT-DALVAKWCAAGGADVEYVRYPGGGHLGAAFASAPDALAWLDDRF 282 (290)
T ss_pred CCCCCEEEEecCCCCCCChHHH-HHHHHHHHHcCCCCEEEEecCCCChhhhhhcCcHHHHHHHHHHH
Confidence 3379999999999999999975 34445555555 57888999999998642 22233334444443
No 107
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=95.75 E-value=0.0076 Score=43.18 Aligned_cols=49 Identities=18% Similarity=0.156 Sum_probs=37.1
Q ss_pred CcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCC-cEEEEecCCCCCCCC
Q 038186 64 QLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSN-VKLIVLEGVRHCPHD 118 (138)
Q Consensus 64 ~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~gH~~~~ 118 (138)
=.+..|+||++++.|+.|.+.|.+... ...+.+++ .+++.. ++||.-..
T Consensus 324 VdL~~It~pvy~~a~~~DhI~P~~Sv~-----~g~~l~~g~~~f~l~-~sGHIa~v 373 (445)
T COG3243 324 VDLGDITCPVYNLAAEEDHIAPWSSVY-----LGARLLGGEVTFVLS-RSGHIAGV 373 (445)
T ss_pred echhhcccceEEEeecccccCCHHHHH-----HHHHhcCCceEEEEe-cCceEEEE
Confidence 357899999999999999998888543 55666777 555555 58998543
No 108
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=95.51 E-value=0.042 Score=35.39 Aligned_cols=54 Identities=20% Similarity=0.148 Sum_probs=38.3
Q ss_pred CCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHh
Q 038186 70 FIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLA 133 (138)
Q Consensus 70 ~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~ 133 (138)
..+++++.|++|.+++...+ .....++..++.+|++|-.. .=+.....|.+|++
T Consensus 134 ~~~~lvll~~~DEvLd~~~a--------~~~~~~~~~~i~~ggdH~f~--~f~~~l~~i~~f~~ 187 (187)
T PF05728_consen 134 PERYLVLLQTGDEVLDYREA--------VAKYRGCAQIIEEGGDHSFQ--DFEEYLPQIIAFLQ 187 (187)
T ss_pred CccEEEEEecCCcccCHHHH--------HHHhcCceEEEEeCCCCCCc--cHHHHHHHHHHhhC
Confidence 46899999999999998642 23334556667788899875 34456667777763
No 109
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=95.20 E-value=0.02 Score=40.55 Aligned_cols=91 Identities=8% Similarity=0.038 Sum_probs=60.3
Q ss_pred hhhcccCcchHHHHHHHhhCCCCCCccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCC-cEEEEecCCCCC
Q 038186 37 TYIACNEEGVLDAFVSIVTGPPGPNPVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSN-VKLIVLEGVRHC 115 (138)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~gH~ 115 (138)
|+-......+.+.|...+..... +..-.-..+.+||-+-.+..|.+--++. .++...|| .+....+.+||+
T Consensus 372 YwlT~si~ss~r~y~e~~~~~~r-~~~~~r~~v~vPtg~a~f~~el~~~~~~-------~lrdky~nL~~~s~~~~GGhF 443 (469)
T KOG2565|consen 372 YWLTNSITSSQRFYDESFNQRQR-DLALDRVQVRVPTGCARFKFELWHTSDD-------VLRDKYPNLTHSSYHPKGGHF 443 (469)
T ss_pred heecCcchhhHHHHHHHHhHHHH-HHHhhccccccchhhhccccchhhCcHH-------HHhhhcccceeeEeccCCcch
Confidence 44444455555666655431111 1111223567899999999887765552 55566777 445567788999
Q ss_pred CCCcChHHHHHHHHHHHhhh
Q 038186 116 PHDDRPELVHENMLPWLAET 135 (138)
Q Consensus 116 ~~~e~p~~~~~~i~~fl~~~ 135 (138)
..+|.|..+++.+.+|++.+
T Consensus 444 aalE~p~~La~D~~~FV~~~ 463 (469)
T KOG2565|consen 444 AALEDPKKLAQDFFSFVEKL 463 (469)
T ss_pred hhhhCcHHHHHHHHHHHHHH
Confidence 99999999999999999864
No 110
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=94.94 E-value=0.0065 Score=39.36 Aligned_cols=44 Identities=23% Similarity=0.324 Sum_probs=33.6
Q ss_pred CCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCC
Q 038186 71 IPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPH 117 (138)
Q Consensus 71 ~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~ 117 (138)
.||++++|+.|.+++.. ..+.+++++..-+++++++++.+|...
T Consensus 167 Pp~~i~~g~~D~l~~~~---~~~~~~L~~~gv~v~~~~~~g~~H~f~ 210 (211)
T PF07859_consen 167 PPTLIIHGEDDVLVDDS---LRFAEKLKKAGVDVELHVYPGMPHGFF 210 (211)
T ss_dssp HEEEEEEETTSTTHHHH---HHHHHHHHHTT-EEEEEEETTEETTGG
T ss_pred CCeeeeccccccchHHH---HHHHHHHHHCCCCEEEEEECCCeEEee
Confidence 59999999999987644 234557777666789999999999653
No 111
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=94.91 E-value=0.078 Score=39.13 Aligned_cols=64 Identities=19% Similarity=0.458 Sum_probs=48.8
Q ss_pred CCCEEEEecCCCCCCCCCCchhhhhhhhcccCCC--------cEEEEecCCCCCCCCc--ChHHHHHHHHHHHhh
Q 038186 70 FIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSN--------VKLIVLEGVRHCPHDD--RPELVHENMLPWLAE 134 (138)
Q Consensus 70 ~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~~gH~~~~e--~p~~~~~~i~~fl~~ 134 (138)
---.++.||..|.++++..+ .+|.+++.+..++ .++..+||.+|+---. .+-.....|.+|+++
T Consensus 353 GGKLI~~HG~aD~~I~p~~t-i~YY~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~ 426 (474)
T PF07519_consen 353 GGKLILYHGWADPLIPPQGT-IDYYERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVEN 426 (474)
T ss_pred CCeEEEEecCCCCccCCCcH-HHHHHHHHHhcccccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhC
Confidence 46889999999999999987 4566666655532 5889999999986533 444667788899875
No 112
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.90 E-value=0.1 Score=35.50 Aligned_cols=58 Identities=19% Similarity=0.225 Sum_probs=47.6
Q ss_pred EEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCC-CCcChHHHHHHHHHHHhhhc
Q 038186 73 VLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCP-HDDRPELVHENMLPWLAETF 136 (138)
Q Consensus 73 vlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~~~ 136 (138)
+.++..++|.++|..... .+.+.-|++++..++ .||.. .+-+-+.+.+.|.+-|++++
T Consensus 309 ~ivv~A~~D~Yipr~gv~-----~lQ~~WPg~eVr~~e-gGHVsayl~k~dlfRR~I~d~L~R~~ 367 (371)
T KOG1551|consen 309 IIVVQAKEDAYIPRTGVR-----SLQEIWPGCEVRYLE-GGHVSAYLFKQDLFRRAIVDGLDRLD 367 (371)
T ss_pred EEEEEecCCccccccCcH-----HHHHhCCCCEEEEee-cCceeeeehhchHHHHHHHHHHHhhh
Confidence 467788999999996542 778889999999998 59985 56777999999999888754
No 113
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=94.76 E-value=0.13 Score=33.15 Aligned_cols=60 Identities=22% Similarity=0.337 Sum_probs=38.2
Q ss_pred ccCcCCCCC-CCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHh
Q 038186 62 PVQLMPTIF-IPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLA 133 (138)
Q Consensus 62 ~~~~~~~i~-~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~ 133 (138)
....+.++. .|+++|+|+++.-..-. .+ ..++++.+.+|| ||..-.+ .+.+++.|.+-++
T Consensus 130 ~~pei~~l~~~~v~CiyG~~E~d~~cp--------~l--~~~~~~~i~lpG-gHHfd~d-y~~La~~Il~~l~ 190 (192)
T PF06057_consen 130 VIPEIAKLPPAPVQCIYGEDEDDSLCP--------SL--RQPGVEVIALPG-GHHFDGD-YDALAKRILDALK 190 (192)
T ss_pred chHHHHhCCCCeEEEEEcCCCCCCcCc--------cc--cCCCcEEEEcCC-CcCCCCC-HHHHHHHHHHHHh
Confidence 444555664 59999999876532111 11 126899999997 7877555 5566676666554
No 114
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=94.47 E-value=0.12 Score=39.09 Aligned_cols=51 Identities=22% Similarity=0.314 Sum_probs=38.1
Q ss_pred cCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhccc-CCCcEEEEecCCCCCCCC
Q 038186 63 VQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSK-LSNVKLIVLEGVRHCPHD 118 (138)
Q Consensus 63 ~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~gH~~~~ 118 (138)
.+.+-.++.|+|+|.|..|..+++.. |+.+.+. -...+++++.+++|-+-.
T Consensus 297 DE~Lldmk~PVLFV~Gsnd~mcspn~-----ME~vreKMqA~~elhVI~~adhsmai 348 (784)
T KOG3253|consen 297 DEALLDMKQPVLFVIGSNDHMCSPNS-----MEEVREKMQAEVELHVIGGADHSMAI 348 (784)
T ss_pred chhhHhcCCceEEEecCCcccCCHHH-----HHHHHHHhhccceEEEecCCCccccC
Confidence 35566789999999999999999884 2244332 234789999999997644
No 115
>PF06850 PHB_depo_C: PHB de-polymerase C-terminus; InterPro: IPR009656 This entry represents the C terminus of bacterial poly(3-hydroxybutyrate) (PHB) de-polymerase. This degrades PHB granules to oligomers and monomers of 3-hydroxy-butyric acid.
Probab=94.31 E-value=0.058 Score=34.86 Aligned_cols=63 Identities=14% Similarity=0.141 Sum_probs=43.9
Q ss_pred CCCEEEEecCCCCCCCCCCchhhhhhhhcccCCC--cEEEEecCCCCCCCCcCh---HHHHHHHHHHHhh
Q 038186 70 FIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSN--VKLIVLEGVRHCPHDDRP---ELVHENMLPWLAE 134 (138)
Q Consensus 70 ~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~gH~~~~e~p---~~~~~~i~~fl~~ 134 (138)
+++.+-|=|+.|.+....... ....+-..+|. ...++.+||||+-...-+ +++...|.+|+..
T Consensus 134 ~taLlTVEGe~DDIsg~GQT~--AA~~LC~glp~~~k~~~~~~g~GHYGlF~G~rwr~~I~P~i~~fi~~ 201 (202)
T PF06850_consen 134 RTALLTVEGERDDISGPGQTH--AAHDLCTGLPADMKRHHLQPGVGHYGLFNGSRWREEIYPRIREFIRQ 201 (202)
T ss_pred cceeEEeecCcccCCcchHHH--HHHHHhcCCCHHHhhhcccCCCCeeecccchhhhhhhhHHHHHHHHh
Confidence 467788999999999988642 11233334444 356688899999665544 6777888888864
No 116
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=94.07 E-value=0.17 Score=36.59 Aligned_cols=56 Identities=14% Similarity=0.244 Sum_probs=40.1
Q ss_pred CCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCc-----ChHHHHHHHHHHHh
Q 038186 71 IPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDD-----RPELVHENMLPWLA 133 (138)
Q Consensus 71 ~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e-----~p~~~~~~i~~fl~ 133 (138)
--+++|+|+.|++.-... .+-+...++.+.+.||++|...+. ..+.....|..|..
T Consensus 352 ~rmlFVYG~nDPW~A~~f-------~l~~g~~ds~v~~~PggnHga~I~~L~~~~r~~a~a~l~~WaG 412 (448)
T PF05576_consen 352 PRMLFVYGENDPWSAEPF-------RLGKGKRDSYVFTAPGGNHGARIAGLPEAERAEATARLRRWAG 412 (448)
T ss_pred CeEEEEeCCCCCcccCcc-------ccCCCCcceEEEEcCCCcccccccCCCHHHHHHHHHHHHHHcC
Confidence 457999999999887664 333344578899999999986542 33456667777764
No 117
>PLN00021 chlorophyllase
Probab=93.84 E-value=0.45 Score=33.25 Aligned_cols=51 Identities=18% Similarity=0.060 Sum_probs=33.1
Q ss_pred CCCCCEEEEecCCCC-----CCC----CCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcCh
Q 038186 68 TIFIPVLVLWGDKDP-----FTP----LDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRP 121 (138)
Q Consensus 68 ~i~~Pvlii~G~~D~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p 121 (138)
.+.+|+++|.+..|. .+| ...... +-+.+.-+.+.+.+++++||+-++|..
T Consensus 187 ~~~~P~liig~g~~~~~~~~~~p~~ap~~~~~~---~f~~~~~~~~~~~~~~~~gH~~~~~~~ 246 (313)
T PLN00021 187 NLDIPVLVIGTGLGGEPRNPLFPPCAPDGVNHA---EFFNECKAPAVHFVAKDYGHMDMLDDD 246 (313)
T ss_pred cCCCCeEEEecCCCcccccccccccCCCCCCHH---HHHHhcCCCeeeeeecCCCcceeecCC
Confidence 477999999998663 333 443321 233344457888899999999775543
No 118
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=93.24 E-value=0.097 Score=36.89 Aligned_cols=61 Identities=21% Similarity=0.200 Sum_probs=45.1
Q ss_pred CCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcCh-----HHHHHHHHHHHhh
Q 038186 71 IPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRP-----ELVHENMLPWLAE 134 (138)
Q Consensus 71 ~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p-----~~~~~~i~~fl~~ 134 (138)
.|++++.++.|.+.....+ |.+++++..-.+++..+++++|..+.-.| ..+.+.|.+|+.+
T Consensus 269 p~tlv~~ag~D~L~D~~~~---Y~~~Lkk~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~ 334 (336)
T KOG1515|consen 269 PPTLVVVAGYDVLRDEGLA---YAEKLKKAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKS 334 (336)
T ss_pred CceEEEEeCchhhhhhhHH---HHHHHHHcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhh
Confidence 3599999999999877765 44577776666777789999998664333 4666777777765
No 119
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=92.70 E-value=0.23 Score=34.38 Aligned_cols=46 Identities=24% Similarity=0.245 Sum_probs=36.1
Q ss_pred CCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCC
Q 038186 70 FIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHD 118 (138)
Q Consensus 70 ~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~ 118 (138)
-.|++++.|+.|.+.+.... +.+++++....+++..+++..|....
T Consensus 245 lPP~~i~~a~~D~l~~~~~~---~a~~L~~agv~~~~~~~~g~~H~f~~ 290 (312)
T COG0657 245 LPPTLIQTAEFDPLRDEGEA---YAERLRAAGVPVELRVYPGMIHGFDL 290 (312)
T ss_pred CCCEEEEecCCCcchhHHHH---HHHHHHHcCCeEEEEEeCCcceeccc
Confidence 57899999999999995533 44577776667899999999996543
No 120
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=92.70 E-value=0.13 Score=33.50 Aligned_cols=60 Identities=22% Similarity=0.389 Sum_probs=40.7
Q ss_pred CCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHhh
Q 038186 70 FIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLAE 134 (138)
Q Consensus 70 ~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 134 (138)
..|.+..||+.|+++|..... +-.+.+......++++.++|.+|..--+.= ..+..|+.+
T Consensus 144 ~~~i~~~Hg~~d~~vp~~~g~-~s~~~l~~~~~~~~f~~y~g~~h~~~~~e~----~~~~~~~~~ 203 (206)
T KOG2112|consen 144 YTPILLCHGTADPLVPFRFGE-KSAQFLKSLGVRVTFKPYPGLGHSTSPQEL----DDLKSWIKT 203 (206)
T ss_pred cchhheecccCCceeehHHHH-HHHHHHHHcCCceeeeecCCccccccHHHH----HHHHHHHHH
Confidence 579999999999999999642 112344444444889999999998754333 334455543
No 121
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.48 E-value=0.39 Score=32.94 Aligned_cols=67 Identities=21% Similarity=0.297 Sum_probs=46.6
Q ss_pred CccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCC-cEEEEecCCCCCCCCcChHHHHHHHHHHHhhh
Q 038186 61 NPVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSN-VKLIVLEGVRHCPHDDRPELVHENMLPWLAET 135 (138)
Q Consensus 61 ~~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~~ 135 (138)
+......++++|+|+..|--|+++|+..-. .+.+.++. .++.+++.=+| .+-|.-.++.+..|++..
T Consensus 250 D~~n~A~RiK~pvL~svgL~D~vcpPstqF-----A~yN~l~~~K~i~iy~~~aH---e~~p~~~~~~~~~~l~~l 317 (321)
T COG3458 250 DIVNLAARIKVPVLMSVGLMDPVCPPSTQF-----AAYNALTTSKTIEIYPYFAH---EGGPGFQSRQQVHFLKIL 317 (321)
T ss_pred hhhhHHHhhccceEEeecccCCCCCChhhH-----HHhhcccCCceEEEeecccc---ccCcchhHHHHHHHHHhh
Confidence 345566789999999999999999999632 33444444 56667775555 455655666677777654
No 122
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=92.41 E-value=0.26 Score=31.43 Aligned_cols=63 Identities=13% Similarity=0.144 Sum_probs=45.1
Q ss_pred CCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCC---cChHHHHHHHHHHHhhh
Q 038186 67 PTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHD---DRPELVHENMLPWLAET 135 (138)
Q Consensus 67 ~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~---e~p~~~~~~i~~fl~~~ 135 (138)
..+.-|.++|...+|++++.+.+. .+++.. ++.++.+.++||+--. ..-.+....+.+|+.+.
T Consensus 114 ~~lpfps~vvaSrnDp~~~~~~a~-----~~a~~w-gs~lv~~g~~GHiN~~sG~g~wpeg~~~l~~~~s~~ 179 (181)
T COG3545 114 EPLPFPSVVVASRNDPYVSYEHAE-----DLANAW-GSALVDVGEGGHINAESGFGPWPEGYALLAQLLSRA 179 (181)
T ss_pred ccCCCceeEEEecCCCCCCHHHHH-----HHHHhc-cHhheecccccccchhhcCCCcHHHHHHHHHHhhhh
Confidence 345679999999999999999653 666655 4778888889998653 23345556666666543
No 123
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=92.38 E-value=0.2 Score=35.60 Aligned_cols=58 Identities=19% Similarity=0.121 Sum_probs=43.7
Q ss_pred cCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCc--EEEEecCCCCCCCCcChHHH
Q 038186 63 VQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNV--KLIVLEGVRHCPHDDRPELV 124 (138)
Q Consensus 63 ~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~gH~~~~e~p~~~ 124 (138)
.+-+..+++|++++.|..|.+.|...-. ..-...+++. .+..+|++.|+-.+|-....
T Consensus 244 ~tgl~~v~~P~~~~a~s~D~~aP~~~~~----~~~f~~l~g~~k~~~~vp~a~h~sfl~~~~~~ 303 (365)
T COG4188 244 TTGLVKVTDPVLLAAGSADGFAPPVTEQ----IRPFGYLPGALKYLRLVPGATHFSFLELCKEG 303 (365)
T ss_pred cccceeeecceeeecccccccCCccccc----ccccccCCcchhheeecCCCccccccccCccc
Confidence 3567788999999999999977776421 2444566666 67889999999988876553
No 124
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=92.26 E-value=0.52 Score=37.01 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=49.2
Q ss_pred cCCCCCCCE-EEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcCh-HHHHHHHHHHHhh
Q 038186 65 LMPTIFIPV-LVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRP-ELVHENMLPWLAE 134 (138)
Q Consensus 65 ~~~~i~~Pv-lii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p-~~~~~~i~~fl~~ 134 (138)
.+..++.|. |+|||+.|..++...+. ++.+.+...--..++.++|+.+|.+-.-.+ ..+...+..|+..
T Consensus 676 ~~~~~~~~~~LliHGt~DdnVh~q~s~-~~~~aL~~~gv~~~~~vypde~H~is~~~~~~~~~~~~~~~~~~ 746 (755)
T KOG2100|consen 676 PANNIKTPKLLLIHGTEDDNVHFQQSA-ILIKALQNAGVPFRLLVYPDENHGISYVEVISHLYEKLDRFLRD 746 (755)
T ss_pred hhhhhccCCEEEEEcCCcCCcCHHHHH-HHHHHHHHCCCceEEEEeCCCCcccccccchHHHHHHHHHHHHH
Confidence 345566676 99999999999888653 344455554333899999999999875443 5566677777763
No 125
>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only]
Probab=91.87 E-value=1.4 Score=31.66 Aligned_cols=65 Identities=15% Similarity=0.205 Sum_probs=48.0
Q ss_pred cCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCC-cEEEEecCCCCCCCCcChHHHHHHHHHHHhhh
Q 038186 63 VQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSN-VKLIVLEGVRHCPHDDRPELVHENMLPWLAET 135 (138)
Q Consensus 63 ~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~~ 135 (138)
.....++..|-.+|.|+.|.++.++.+. -+...+|+ ..+..+|+..|..- +..+.+.|..|+.+.
T Consensus 322 try~~RLalpKyivnaSgDdff~pDsa~-----lYyd~LPG~kaLrmvPN~~H~~~---n~~i~esl~~flnrf 387 (507)
T COG4287 322 TRYQLRLALPKYIVNASGDDFFVPDSAN-----LYYDDLPGEKALRMVPNDPHNLI---NQFIKESLEPFLNRF 387 (507)
T ss_pred hhhhhhccccceeecccCCcccCCCccc-----eeeccCCCceeeeeCCCCcchhh---HHHHHHHHHHHHHHH
Confidence 3455788999999999999999988763 66677888 46778999988754 334555666666553
No 126
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=91.63 E-value=0.86 Score=33.08 Aligned_cols=67 Identities=19% Similarity=0.170 Sum_probs=48.1
Q ss_pred CcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEE---ecCCCCCCC---CcChHHHHHHHHHHHhhh
Q 038186 64 QLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIV---LEGVRHCPH---DDRPELVHENMLPWLAET 135 (138)
Q Consensus 64 ~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~gH~~~---~e~p~~~~~~i~~fl~~~ 135 (138)
-.+..+.+||.+.+|+.|.+..++.- ..+....+++.... +++=.|+=. .+.++.+.+.|.+.++..
T Consensus 326 Y~l~~i~~P~~l~~g~~D~l~~~~DV-----~~~~~~~~~~~~~~~~~~~~ynHlDFi~g~da~~~vy~~vi~~~~~~ 398 (403)
T KOG2624|consen 326 YDLTNIKVPTALYYGDNDWLADPEDV-----LILLLVLPNSVIKYIVPIPEYNHLDFIWGLDAKEEVYDPVIERLRLF 398 (403)
T ss_pred CCccccccCEEEEecCCcccCCHHHH-----HHHHHhcccccccccccCCCccceeeeeccCcHHHHHHHHHHHHHhh
Confidence 34677899999999999999988853 14444455544422 677788633 477899999998888753
No 127
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=91.50 E-value=0.48 Score=35.38 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=24.2
Q ss_pred cCcCCCCCCCEEEEecCCCCCCCCCCc
Q 038186 63 VQLMPTIFIPVLVLWGDKDPFTPLDGP 89 (138)
Q Consensus 63 ~~~~~~i~~Pvlii~G~~D~~~~~~~~ 89 (138)
.-.|++|++|+.++.|..|.++|+..+
T Consensus 290 ~~DLr~Ir~Piivfas~gDnITPP~Qa 316 (581)
T PF11339_consen 290 RVDLRNIRSPIIVFASYGDNITPPQQA 316 (581)
T ss_pred EeehhhCCCCEEEEeccCCCCCChhHh
Confidence 446889999999999999999999975
No 128
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.06 E-value=0.48 Score=32.11 Aligned_cols=60 Identities=8% Similarity=0.148 Sum_probs=45.2
Q ss_pred CCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEE-ecCCCCCCCCcChHHHHHHHHHHH
Q 038186 68 TIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIV-LEGVRHCPHDDRPELVHENMLPWL 132 (138)
Q Consensus 68 ~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~gH~~~~e~p~~~~~~i~~fl 132 (138)
+=.+-+.+.+|..|.++|.+.. ..++...|...+.. .+++-|.......+..+..+.+.+
T Consensus 240 en~d~l~Fyygt~DgW~p~~~~-----d~~kdd~~eed~~Ldedki~HAFV~~~~q~ma~~v~d~~ 300 (301)
T KOG3975|consen 240 ENLDSLWFYYGTNDGWVPSHYY-----DYYKDDVPEEDLKLDEDKIPHAFVVKHAQYMANAVFDMI 300 (301)
T ss_pred hcCcEEEEEccCCCCCcchHHH-----HHHhhhcchhceeeccccCCcceeecccHHHHHHHHHhh
Confidence 3357889999999999997753 37778777754433 278999888888888887777655
No 129
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=91.03 E-value=0.15 Score=36.79 Aligned_cols=61 Identities=16% Similarity=0.346 Sum_probs=38.1
Q ss_pred CCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHhhh
Q 038186 67 PTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLAET 135 (138)
Q Consensus 67 ~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~~ 135 (138)
++..+|+|.|.|++|+++|.+... -++..-.+.+...++... ++ +.=+.....+.+||++.
T Consensus 349 rr~~~plL~i~~~~D~v~P~eD~~-----lia~~s~~gk~~~~~~~~--~~-~gy~~al~~~~~Wl~~~ 409 (411)
T PF06500_consen 349 RRCPTPLLAINGEDDPVSPIEDSR-----LIAESSTDGKALRIPSKP--LH-MGYPQALDEIYKWLEDK 409 (411)
T ss_dssp S-BSS-EEEEEETT-SSS-HHHHH-----HHHHTBTT-EEEEE-SSS--HH-HHHHHHHHHHHHHHHHH
T ss_pred CCCCcceEEeecCCCCCCCHHHHH-----HHHhcCCCCceeecCCCc--cc-cchHHHHHHHHHHHHHh
Confidence 677899999999999999999642 555566668888888543 12 22245667777888753
No 130
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=90.75 E-value=1 Score=31.07 Aligned_cols=69 Identities=14% Similarity=0.208 Sum_probs=44.4
Q ss_pred cCcCCCCCCCEEEEecCCCCCCCCCCchhhhh--------------------hhhcccC---CCcEEEEecCCCCCCCCc
Q 038186 63 VQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYF--------------------SSLPSKL---SNVKLIVLEGVRHCPHDD 119 (138)
Q Consensus 63 ~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~--------------------~~~~~~~---~~~~~~~i~~~gH~~~~e 119 (138)
.+.+.+-++|+++++|.+|.++-.+.. .|.. ..+...+ ....-+.+...||+.+=.
T Consensus 205 I~~ln~~~ikvli~ygg~DhLIEeeI~-~E~a~~f~~l~Hf~~~~~~seee~~kI~~~f~~~~~~~sv~f~~dgHf~qK~ 283 (297)
T PF06342_consen 205 IDKLNKKPIKVLIAYGGKDHLIEEEIS-FEFAMKFKGLDHFNIEKEISEEEKPKILKSFASGQKGASVFFAKDGHFQQKF 283 (297)
T ss_pred HHHhccCCCcEEEEEcCcchhhHHHHH-HHHHHHhCCccceeeecCCChhHHHHHHHHHhcCCceeEEEEecCChHHhHH
Confidence 355666679999999999998754421 0110 1111111 122334566679999999
Q ss_pred ChHHHHHHHHHHH
Q 038186 120 RPELVHENMLPWL 132 (138)
Q Consensus 120 ~p~~~~~~i~~fl 132 (138)
+|+-+++.+.+.|
T Consensus 284 ~A~lIA~~i~~mf 296 (297)
T PF06342_consen 284 RADLIAEAIKKMF 296 (297)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999888765
No 131
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=90.64 E-value=0.85 Score=33.83 Aligned_cols=63 Identities=24% Similarity=0.134 Sum_probs=37.3
Q ss_pred CCEEEEecCCCCCCCCCCch--hhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHhh
Q 038186 71 IPVLVLWGDKDPFTPLDGPV--GKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLAE 134 (138)
Q Consensus 71 ~Pvlii~G~~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 134 (138)
..++...|-.|..++.-.+. .+.+...+..-....+.+++ +||+++.++|+...+.+..|+.-
T Consensus 426 Lkw~~~~g~~d~~~~~~~~~~t~e~~~~~~s~~n~~~~r~y~-aGHMvp~d~P~~~~~~~~~~~~~ 490 (498)
T COG2939 426 LKWLGASGYFDASTPFFWSRLTLEEMGGYKSYRNLTFLRIYE-AGHMVPYDRPESSLEMVNLWING 490 (498)
T ss_pred ceEeeecchhhhcCCCcccccchhhcccccccCCceEEEEec-CcceeecCChHHHHHHHHHHHhh
Confidence 45555556566555554430 11111222222224445555 79999999999999999888754
No 132
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=90.18 E-value=0.12 Score=34.58 Aligned_cols=66 Identities=23% Similarity=0.323 Sum_probs=48.0
Q ss_pred ccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEE--EecC----CCCCCCCcCh-HHHHHHHHHHH
Q 038186 62 PVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLI--VLEG----VRHCPHDDRP-ELVHENMLPWL 132 (138)
Q Consensus 62 ~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~----~gH~~~~e~p-~~~~~~i~~fl 132 (138)
+.+.+..+++|++.+...+|++.|+... +.+....+|+.+. .++. .||+-..-+| |...+.+..|+
T Consensus 208 ~~q~yaaVrtPi~~~~~~DD~w~P~As~-----d~f~~~y~nApl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 208 YRQVYAAVRTPITFSRALDDPWAPPASR-----DAFASFYRNAPLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred HHHHHHHhcCceeeeccCCCCcCCHHHH-----HHHHHhhhcCcccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 4456678899999999999999999864 2666666665444 3443 4998777666 77777776665
No 133
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=89.52 E-value=0.2 Score=32.97 Aligned_cols=63 Identities=8% Similarity=0.097 Sum_probs=42.6
Q ss_pred cCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcCh----HHHHHHHHHHH
Q 038186 65 LMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRP----ELVHENMLPWL 132 (138)
Q Consensus 65 ~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p----~~~~~~i~~fl 132 (138)
.+..+++|++++.|++|.---.+.. +.+......+++..++|.+|+-.+|+- ..+...+++|+
T Consensus 202 ~~~~v~~~ilVv~~~~espklieQn-----rdf~~q~~~a~~~~f~n~~hy~I~~~~~~~~s~~~~~~~~~~ 268 (270)
T KOG4627|consen 202 EYTDVTVWILVVAAEHESPKLIEQN-----RDFADQLRKASFTLFKNYDHYDIIEETAIDDSDVSRFLRNIE 268 (270)
T ss_pred HhcCceeeeeEeeecccCcHHHHhh-----hhHHHHhhhcceeecCCcchhhHHHHhccccchHHHHHHHHh
Confidence 4567789999999999843333322 266667777999999999999665543 33444444443
No 134
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=88.66 E-value=0.36 Score=32.62 Aligned_cols=52 Identities=19% Similarity=0.225 Sum_probs=31.8
Q ss_pred CcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcc--cCCCcEEEEecCCCCCCCCcCh
Q 038186 64 QLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPS--KLSNVKLIVLEGVRHCPHDDRP 121 (138)
Q Consensus 64 ~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~gH~~~~e~p 121 (138)
..+..+.+|++...+++|.++....-. .+.. .-+..+++.++|++|-+. |+|
T Consensus 189 ~~~k~l~iP~iaF~A~~D~WV~q~eV~-----~~~~~~~s~~~klysl~Gs~HdL~-enl 242 (294)
T PF02273_consen 189 NDMKRLSIPFIAFTANDDDWVKQSEVE-----ELLDNINSNKCKLYSLPGSSHDLG-ENL 242 (294)
T ss_dssp HHHTT--S-EEEEEETT-TTS-HHHHH-----HHHTT-TT--EEEEEETT-SS-TT-SSH
T ss_pred HHHhhCCCCEEEEEeCCCccccHHHHH-----HHHHhcCCCceeEEEecCccchhh-hCh
Confidence 456778999999999999999877421 3333 234478999999999886 555
No 135
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=88.04 E-value=0.91 Score=29.64 Aligned_cols=60 Identities=18% Similarity=0.289 Sum_probs=42.0
Q ss_pred CCCEEEEecCCCCCCCCCCchhhhhhhhcccCCC-cEEEEecCCCCCCCCc-ChHHHHHHHHHHH
Q 038186 70 FIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSN-VKLIVLEGVRHCPHDD-RPELVHENMLPWL 132 (138)
Q Consensus 70 ~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~gH~~~~e-~p~~~~~~i~~fl 132 (138)
.+|.++..+..|+........ ....+.+..++ .+++.++| +|+-++. +...+++.|.++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~--~~~~W~~~~~~~~~~~~v~G-~H~~~l~~~~~~i~~~I~~~~ 229 (229)
T PF00975_consen 168 KVPITLFYALDDPLVSMDRLE--EADRWWDYTSGDVEVHDVPG-DHFSMLKPHVAEIAEKIAEWL 229 (229)
T ss_dssp SSEEEEEEECSSSSSSHHCGG--HHCHHHGCBSSSEEEEEESS-ETTGHHSTTHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCccccchhhh--hHHHHHHhcCCCcEEEEEcC-CCcEecchHHHHHHHHHhccC
Confidence 578999999998877655211 11234555554 67888985 8998776 7788888888775
No 136
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=83.04 E-value=1.3 Score=28.80 Aligned_cols=20 Identities=20% Similarity=0.052 Sum_probs=16.9
Q ss_pred CCCEEEEecCCCCCCCCCCc
Q 038186 70 FIPVLVLWGDKDPFTPLDGP 89 (138)
Q Consensus 70 ~~Pvlii~G~~D~~~~~~~~ 89 (138)
..|+++++|++|.++|.+.+
T Consensus 168 ~p~~~i~hG~~D~vVp~~~~ 187 (212)
T TIGR01840 168 TPIMSVVHGDADYTVLPGNA 187 (212)
T ss_pred CCeEEEEEcCCCceeCcchH
Confidence 44578999999999999975
No 137
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=81.35 E-value=2.3 Score=31.08 Aligned_cols=38 Identities=29% Similarity=0.482 Sum_probs=23.9
Q ss_pred CCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCC
Q 038186 71 IPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCP 116 (138)
Q Consensus 71 ~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~ 116 (138)
.-|+++.|+.||+....... ..-+....++|||++|..
T Consensus 377 tnviFtNG~~DPW~~lgv~~--------~~~~~~~~~~I~g~~Hc~ 414 (434)
T PF05577_consen 377 TNVIFTNGELDPWRALGVTS--------DSSDSVPAIVIPGGAHCS 414 (434)
T ss_dssp -SEEEEEETT-CCGGGS--S---------SSSSEEEEEETT--TTG
T ss_pred CeEEeeCCCCCCcccccCCC--------CCCCCcccEEECCCeeec
Confidence 47999999999998877421 223345667899999984
No 138
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=80.64 E-value=1.5 Score=29.77 Aligned_cols=49 Identities=22% Similarity=0.259 Sum_probs=29.0
Q ss_pred CcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccC-CCcEEEEecCCCCC
Q 038186 64 QLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKL-SNVKLIVLEGVRHC 115 (138)
Q Consensus 64 ~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~gH~ 115 (138)
+.+.++++|+|++.|-.|..+. ..+ -+.++.+...- .+.++++=| .+|.
T Consensus 222 ~~~~~i~vP~l~v~Gw~D~~~~-~~~-~~~~~~l~~~~~~~~~Liigp-w~H~ 271 (272)
T PF02129_consen 222 ERLDKIDVPVLIVGGWYDTLFL-RGA-LRAYEALRAPGSKPQRLIIGP-WTHG 271 (272)
T ss_dssp HHHGG--SEEEEEEETTCSSTS-HHH-HHHHHHHCTTSTC-EEEEEES-ESTT
T ss_pred HHHhhCCCCEEEecccCCcccc-hHH-HHHHHHhhcCCCCCCEEEEeC-CCCC
Confidence 3458999999999999996665 332 22334444443 234777766 4675
No 139
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=80.56 E-value=4.3 Score=25.64 Aligned_cols=59 Identities=12% Similarity=0.272 Sum_probs=37.0
Q ss_pred CCCCCCEEEEecCCCCCC-CCCCchhhhhhhhccc-CCCcEEEEecCCCCCCC-CcChHHHHHHHHHH
Q 038186 67 PTIFIPVLVLWGDKDPFT-PLDGPVGKYFSSLPSK-LSNVKLIVLEGVRHCPH-DDRPELVHENMLPW 131 (138)
Q Consensus 67 ~~i~~Pvlii~G~~D~~~-~~~~~~~~~~~~~~~~-~~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~f 131 (138)
..+.+|+.++.|+.|... +.... ..+... .....+..+++ +|+.+ .+++..+.+.|..|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~W~~~~~~~~~~~~~~g-~H~~~~~~~~~~~~~~~~~~ 211 (212)
T smart00824 150 GPVAAPTLLVRASEPLAEWPDEDP-----DGWRAHWPLPHTVVDVPG-DHFTMMEEHAAATARAVHDW 211 (212)
T ss_pred CCCCCCEEEEeccCCCCCCCCCCc-----ccccCCCCCCceeEEccC-chHHHHHHhHHHHHHHHHhh
Confidence 356799999999988654 22211 123332 24577888885 78876 45666676666654
No 140
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=79.24 E-value=1.1 Score=29.67 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=24.9
Q ss_pred EEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCC
Q 038186 74 LVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPH 117 (138)
Q Consensus 74 lii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~ 117 (138)
..|-|++|.++|+..- + .+.+. .+.++.++ ++|++.
T Consensus 169 ~aiIg~~D~IFpp~nQ--~---~~W~~--~~~~~~~~-~~Hy~F 204 (213)
T PF04301_consen 169 KAIIGKKDRIFPPENQ--K---RAWQG--RCTIVEID-APHYPF 204 (213)
T ss_pred EEEEcCCCEEeCHHHH--H---HHHhC--cCcEEEec-CCCcCc
Confidence 4789999999999942 1 33332 24566775 799986
No 141
>PRK04940 hypothetical protein; Provisional
Probab=78.90 E-value=6.9 Score=25.20 Aligned_cols=52 Identities=12% Similarity=0.074 Sum_probs=36.1
Q ss_pred CEEEEecCCCCCCCCCCchhhhhhhhcccCCCc-EEEEecCCCCCCCCcChHHHHHHHHHHHh
Q 038186 72 PVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNV-KLIVLEGVRHCPHDDRPELVHENMLPWLA 133 (138)
Q Consensus 72 Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~gH~~~~e~p~~~~~~i~~fl~ 133 (138)
..+++..+.|.+.+...+. +...+. ++.+.+|+.|-.. .=+.....|.+|++
T Consensus 126 r~~vllq~gDEvLDyr~a~--------~~y~~~y~~~v~~GGdH~f~--~fe~~l~~I~~F~~ 178 (180)
T PRK04940 126 RCLVILSRNDEVLDSQRTA--------EELHPYYEIVWDEEQTHKFK--NISPHLQRIKAFKT 178 (180)
T ss_pred cEEEEEeCCCcccCHHHHH--------HHhccCceEEEECCCCCCCC--CHHHHHHHHHHHHh
Confidence 3499999999999887532 333455 6888888888653 33446677788874
No 142
>PF10605 3HBOH: 3HB-oligomer hydrolase (3HBOH) ; InterPro: IPR016582 This entry represents a group of predicted D-(-)-3-hydroxybutyrate oligomer hydrolases (also known as 3HB-oligomer hydrolase), which function in the degradation of poly-3-hydroxybutyrate (PHB). These enzymes catalyse the hydrolysis of D(-)-3-hydroxybutyrate oligomers (3HB-oligomers) into 3HB-monomers [, ].; GO: 0047989 hydroxybutyrate-dimer hydrolase activity, 0019605 butyrate metabolic process, 0005615 extracellular space
Probab=78.55 E-value=3.8 Score=31.44 Aligned_cols=49 Identities=14% Similarity=0.335 Sum_probs=34.0
Q ss_pred CC-CCCEEEEecCCCCCCCCCCchhhhhhhhc---ccCCCcEEEEecCCCCCC
Q 038186 68 TI-FIPVLVLWGDKDPFTPLDGPVGKYFSSLP---SKLSNVKLIVLEGVRHCP 116 (138)
Q Consensus 68 ~i-~~Pvlii~G~~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~gH~~ 116 (138)
++ ..|++++||..|.++|...+-.-|..... ......+++.+.++-|+=
T Consensus 552 ~L~GKPaIiVhGR~DaLlPvnh~Sr~Y~~ln~~~eG~~s~lrYyeV~naqHfD 604 (690)
T PF10605_consen 552 NLHGKPAIIVHGRSDALLPVNHTSRPYLGLNRQVEGRASRLRYYEVTNAQHFD 604 (690)
T ss_pred CcCCCceEEEecccceecccCCCchHHHHHhhhhcccccceeEEEecCCeech
Confidence 44 58999999999999999875322322221 122457888899988874
No 143
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=74.63 E-value=7.9 Score=32.32 Aligned_cols=49 Identities=2% Similarity=-0.055 Sum_probs=33.4
Q ss_pred CCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcCh
Q 038186 67 PTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRP 121 (138)
Q Consensus 67 ~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p 121 (138)
..+.+|++++.|..|...+..... .+.+..++..+..++ +||+.++..+
T Consensus 1233 ~~~~~~~~~~~~~~~~~~~~~~~~-----~W~~~~~~~~~~~v~-g~H~~~~~~~ 1281 (1296)
T PRK10252 1233 VPFDGKATLFVAERTLQEGMSPEQ-----AWSPWIAELDVYRQD-CAHVDIISPE 1281 (1296)
T ss_pred CcccCceEEEEcCCCCcccCCccc-----chhhhcCCCEEEECC-CCHHHHCCcH
Confidence 556789999999988665544321 333344667888886 6899887555
No 144
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=68.92 E-value=17 Score=24.81 Aligned_cols=40 Identities=20% Similarity=0.322 Sum_probs=28.0
Q ss_pred CCCEEEEecCCCCCCCCCCchhhhhhhhcccCCC----cEEEEecCCCCC
Q 038186 70 FIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSN----VKLIVLEGVRHC 115 (138)
Q Consensus 70 ~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~gH~ 115 (138)
...+.+++|..|.++|.+.. +.+.+..|+ ..+.. +|.-|.
T Consensus 221 ~~kl~f~fg~~D~Wvp~~~~-----~~l~~~~~~~~~~~~v~~-~~i~Ha 264 (266)
T PF10230_consen 221 GDKLWFYFGQNDHWVPNETR-----DELIERYPGHEPDVVVDE-EGIPHA 264 (266)
T ss_pred CCEEEEEEeCCCCCCCHHHH-----HHHHHHcCCCCCeEEEec-CCCCCC
Confidence 67999999999999998853 366666663 23333 555553
No 145
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=67.41 E-value=17 Score=28.49 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=48.3
Q ss_pred CCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCC-CcChHHHHHHHHHHHhh
Q 038186 71 IPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPH-DDRPELVHENMLPWLAE 134 (138)
Q Consensus 71 ~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~ 134 (138)
-..++|||--|..+..... ...+..+.+....-++.++|+-.|.+= .|.-.-.-..|..|+++
T Consensus 803 nRLlLvHGliDENVHF~Ht-s~Lvs~lvkagKpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 803 NRLLLVHGLIDENVHFAHT-SRLVSALVKAGKPYELQIFPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred ceEEEEecccccchhhhhH-HHHHHHHHhCCCceEEEEccccccccCCCccchhHHHHHHHHHhh
Confidence 4579999999988888764 344556666666689999999999985 55556677788888875
No 146
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=62.89 E-value=22 Score=24.40 Aligned_cols=49 Identities=14% Similarity=0.024 Sum_probs=30.6
Q ss_pred CCCCEEEEecCCCC---------CCCCCCchhhhhhhhc-ccCCCcEEEEecCCCCCCCCcCh
Q 038186 69 IFIPVLVLWGDKDP---------FTPLDGPVGKYFSSLP-SKLSNVKLIVLEGVRHCPHDDRP 121 (138)
Q Consensus 69 i~~Pvlii~G~~D~---------~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~gH~~~~e~p 121 (138)
..+|+++|-..-+. -.|....+. ++. +..+.+...++.+.||+=+++..
T Consensus 153 ~~~P~lviGtGLg~~~~~~~~~~CaP~g~n~~----~Ff~~~~~p~~~~v~~~~GH~d~LDd~ 211 (259)
T PF12740_consen 153 FSMPALVIGTGLGGEPRNPLFPPCAPAGVNYR----EFFDECKPPSWHFVAKDYGHMDFLDDD 211 (259)
T ss_pred CCCCeEEEecccCcccccccCCCCCCCCCCHH----HHHHhcCCCEEEEEeCCCCchHhhcCC
Confidence 45999999665553 233333332 332 33445667778899999887765
No 147
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=60.84 E-value=8.4 Score=25.64 Aligned_cols=19 Identities=21% Similarity=0.343 Sum_probs=17.2
Q ss_pred CCEEEEecCCCCCCCCCCc
Q 038186 71 IPVLVLWGDKDPFTPLDGP 89 (138)
Q Consensus 71 ~Pvlii~G~~D~~~~~~~~ 89 (138)
.|++++||+.|..+.+..+
T Consensus 170 ~P~~v~hG~~D~tV~~~n~ 188 (220)
T PF10503_consen 170 YPRIVFHGTADTTVNPQNA 188 (220)
T ss_pred CCEEEEecCCCCccCcchH
Confidence 6999999999999999864
No 148
>PF06289 FlbD: Flagellar protein (FlbD); InterPro: IPR009384 This family consists of several bacterial FlbD flagellar proteins. The exact function of this family is unknown [].
Probab=60.35 E-value=15 Score=19.11 Aligned_cols=37 Identities=8% Similarity=0.110 Sum_probs=28.9
Q ss_pred cccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHhhh
Q 038186 98 PSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLAET 135 (138)
Q Consensus 98 ~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~~ 135 (138)
.+..|+..+.... +.+++..|.++++.+.|.+|-.+.
T Consensus 22 ie~~PDTvItL~~-G~k~vV~Es~~eVi~ki~~y~~~i 58 (60)
T PF06289_consen 22 IEETPDTVITLTN-GKKYVVKESVEEVIEKIIEYRRKI 58 (60)
T ss_pred EEEcCCeEEEEeC-CCEEEEECCHHHHHHHHHHHHHhc
Confidence 3567887666664 467888999999999999997653
No 149
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=60.21 E-value=7.5 Score=26.50 Aligned_cols=60 Identities=22% Similarity=0.396 Sum_probs=39.0
Q ss_pred CCCEEEEecC------CCCCCCCCCchhhhhhhhcc-cCCCcEEEEecC--CCCCCCCcChHHHHHHHHHHH
Q 038186 70 FIPVLVLWGD------KDPFTPLDGPVGKYFSSLPS-KLSNVKLIVLEG--VRHCPHDDRPELVHENMLPWL 132 (138)
Q Consensus 70 ~~Pvlii~G~------~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~--~gH~~~~e~p~~~~~~i~~fl 132 (138)
.+.||-|.|. .|..+|...+. .++.+.+ ....-+-.++.| +.|.-..|+| +|.+.|.+||
T Consensus 184 ~i~VLnI~G~~~~g~~sDG~V~~~Ss~--sl~~L~~~~~~~Y~e~~v~G~~a~HS~LheN~-~V~~~I~~FL 252 (255)
T PF06028_consen 184 NIQVLNIYGDLEDGSNSDGIVPNASSL--SLRYLLKNRAKSYQEKTVTGKDAQHSQLHENP-QVDKLIIQFL 252 (255)
T ss_dssp T-EEEEEEEESBTTCSBTSSSBHHHHC--THHHHCTTTSSEEEEEEEESGGGSCCGGGCCH-HHHHHHHHHH
T ss_pred CeEEEEEecccCCCCCCCeEEeHHHHH--HHHHHhhcccCceEEEEEECCCCccccCCCCH-HHHHHHHHHh
Confidence 5789999998 78888776542 2223322 222344556654 5898777887 6779999998
No 150
>COG1582 FlgEa Uncharacterized protein, possibly involved in motility [Cell motility and secretion]
Probab=56.50 E-value=25 Score=18.47 Aligned_cols=38 Identities=8% Similarity=0.191 Sum_probs=31.2
Q ss_pred cccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHhhhc
Q 038186 98 PSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLAETF 136 (138)
Q Consensus 98 ~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~~~ 136 (138)
.+.+|+..+..+.| .-++.-|.-++|.+.|.+|-.+..
T Consensus 22 ie~~PDttItLinG-kkyvVkEsveEVi~kI~~y~rkI~ 59 (67)
T COG1582 22 IEAFPDTTITLING-KKYVVKESVEEVINKIIEYRRKIG 59 (67)
T ss_pred hhccCCcEEEEEcC-cEEEEcccHHHHHHHHHHHHHHhh
Confidence 45789999988864 678889999999999999877653
No 151
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=53.92 E-value=43 Score=25.49 Aligned_cols=47 Identities=19% Similarity=0.127 Sum_probs=27.3
Q ss_pred CcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCC
Q 038186 64 QLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHC 115 (138)
Q Consensus 64 ~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~ 115 (138)
..+.++++|++++.|-.|...+... +.++.+.+. .+.++++=| .+|.
T Consensus 226 ~~~~~i~vP~l~~~gw~D~~~~g~~---~~~~~~~~~-~~~~lilGp-w~H~ 272 (550)
T TIGR00976 226 RDLGGSDVPTLVTGGWYDNHSRGSI---RLFLAVHRG-GAQRLVVGP-WTHS 272 (550)
T ss_pred hHhcCCCCCEEEeCcccCCCCchHH---HHHHHHhhc-CCceEEEcc-CCCC
Confidence 4567899999999999994333332 112222222 235565444 4676
No 152
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=53.40 E-value=10 Score=26.97 Aligned_cols=60 Identities=15% Similarity=0.173 Sum_probs=40.1
Q ss_pred CCEEEEecCCCCCCCCCCchhhhh-------------------------hhhcccCCCcEEEEecCCCCCCCCcChHHHH
Q 038186 71 IPVLVLWGDKDPFTPLDGPVGKYF-------------------------SSLPSKLSNVKLIVLEGVRHCPHDDRPELVH 125 (138)
Q Consensus 71 ~Pvlii~G~~D~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~ 125 (138)
+-|.|..|..|-++......+ +. ..+.+...|.....++.+||+.+-++|+.+.
T Consensus 326 v~V~VynG~lDlIc~T~G~~A-Wv~~l~w~~~p~f~~~~r~~~~~s~~l~gy~ktyknl~f~wilraghmvp~Dnp~~a~ 404 (414)
T KOG1283|consen 326 VNVTVYNGQLDLICATMGTEA-WVEKLEWSAKPSFQVSPRVGITVSRVLEGYEKTYKNLSFFWILRAGHMVPADNPAAAS 404 (414)
T ss_pred ceEEEEecccchhhcccchhh-hhhheecCCCCccccceeeeccceeecchhhhhhccceeEEeecccCcccCCCHHHHh
Confidence 677888888887776543210 11 1122234556778889999999999999887
Q ss_pred HHHHHH
Q 038186 126 ENMLPW 131 (138)
Q Consensus 126 ~~i~~f 131 (138)
..++.+
T Consensus 405 hmlr~v 410 (414)
T KOG1283|consen 405 HMLRHV 410 (414)
T ss_pred hheeec
Confidence 665543
No 153
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=53.08 E-value=51 Score=24.45 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=33.5
Q ss_pred CcCCCCC-CCEEEEecCC--CCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHH
Q 038186 64 QLMPTIF-IPVLVLWGDK--DPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWL 132 (138)
Q Consensus 64 ~~~~~i~-~Pvlii~G~~--D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl 132 (138)
..+.+|. .-|.+|+|.+ |..+|... ..+.+++.+|| ||..- +.-+.+++.|.+=+
T Consensus 389 ~~~~~l~~~~v~CiYG~~e~d~~Cp~l~------------~~~~~~v~lpG-gHHFd-~dy~~la~~il~~~ 446 (456)
T COG3946 389 PDIAKLPLARVQCIYGQEEKDTACPSLK------------AKGVDTVKLPG-GHHFD-GDYEKLAKAILQGM 446 (456)
T ss_pred hhhhhCCcceeEEEecCccccccCCcch------------hhcceeEecCC-CcccC-ccHHHHHHHHHHHH
Confidence 3444453 5789999965 44544442 13577889997 66654 44456666666544
No 154
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=52.52 E-value=16 Score=27.43 Aligned_cols=40 Identities=30% Similarity=0.408 Sum_probs=29.8
Q ss_pred CCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCC
Q 038186 70 FIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPH 117 (138)
Q Consensus 70 ~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~ 117 (138)
..-|++.+|.-|++-.... ......++....+.|++|+.=
T Consensus 433 atnVvf~NG~~DPWh~LG~--------~~st~~~~~~~li~gtsHCaD 472 (514)
T KOG2182|consen 433 ATNVVFPNGSLDPWHALGL--------QNSTDSSVVSILINGTSHCAD 472 (514)
T ss_pred cceEEecCCCCCchhhhcc--------ccCCCCCceEEEecCCccccc
Confidence 4689999999999877663 223344567778999999863
No 155
>COG2830 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.07 E-value=12 Score=23.83 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=23.7
Q ss_pred EEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCC
Q 038186 75 VLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPH 117 (138)
Q Consensus 75 ii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~ 117 (138)
.+.|.+|.++|+.... .+. .+.+.+..+.| +|++.
T Consensus 169 a~v~skDkIFpp~nq~-----ayw--~~rc~v~ei~g-~H~~F 203 (214)
T COG2830 169 AYVGSKDKIFPPANQH-----AYW--NARCAVIEING-EHYLF 203 (214)
T ss_pred hhccCCCcccCCcchh-----hhh--ccceeEEEecC-cceEE
Confidence 3678999999999522 332 34577778865 78753
No 156
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=46.29 E-value=49 Score=25.54 Aligned_cols=51 Identities=29% Similarity=0.290 Sum_probs=32.2
Q ss_pred CccCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCC
Q 038186 61 NPVQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPH 117 (138)
Q Consensus 61 ~~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~ 117 (138)
+....+.++++|+|+|.|-.|......... +..+.. .+.++++=| -.|.-+
T Consensus 243 ~~~~d~~~i~vP~L~i~gW~D~~l~~~~~~---~~~~~~--r~~~lvvgP-w~H~~~ 293 (563)
T COG2936 243 DRVADLSKIKVPALVIGGWSDGYLHTAIKL---FAFLRS--RPVKLVVGP-WTHGGP 293 (563)
T ss_pred CcccccccCCCcEEEEcccccccccchHHH---hhhccc--CCceeEEcc-cccCCC
Confidence 345677889999999999999876666421 111111 146676666 356543
No 157
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=43.14 E-value=23 Score=26.35 Aligned_cols=52 Identities=17% Similarity=0.145 Sum_probs=31.7
Q ss_pred EEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHhh
Q 038186 74 LVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLAE 134 (138)
Q Consensus 74 lii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 134 (138)
.+++|+.|..++.+.+ +.. .+..+....++ +.|...+.++ .+.+.|..||+.
T Consensus 370 ~~~y~dGDGTV~~~S~------~~~-~~~~~~~~~l~-~~H~~il~n~-~v~~~I~~fL~~ 421 (440)
T PLN02733 370 EYTYVDGDGTVPVESA------KAD-GLNAVARVGVP-GDHRGILRDE-HVFRILKHWLKV 421 (440)
T ss_pred eEEEeCCCCEEecchh------hcc-CccccccccCC-chHHHHhcCH-HHHHHHHHHHhc
Confidence 4455566666666643 111 12234445566 6898888775 577888999864
No 158
>cd08770 DAP_dppA_3 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=42.70 E-value=92 Score=21.53 Aligned_cols=55 Identities=13% Similarity=0.144 Sum_probs=35.4
Q ss_pred CCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecC-CCCCCCCcChHHHHHHHHHHH
Q 038186 67 PTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEG-VRHCPHDDRPELVHENMLPWL 132 (138)
Q Consensus 67 ~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~gH~~~~e~p~~~~~~i~~fl 132 (138)
....+||.++.|++-. .+..++.+|++..+.++. .|...---.|+...+.|.+=.
T Consensus 144 g~~gVPV~lvsGD~~~-----------~~ea~~~~P~~~tv~vK~~~g~aa~~~~p~~a~~~I~~~~ 199 (263)
T cd08770 144 AYLGVPVVFVSGDAGL-----------CAEAKELNPNIVTVPVKEGFGGATISIHPGLACKEIRKGV 199 (263)
T ss_pred hhcCCCEEEEecCHHH-----------HHHHHHhCCCceEEEeeeeeccccccCCHHHHHHHHHHHH
Confidence 4568999999996431 123455679988888874 232222346777777777655
No 159
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=41.85 E-value=47 Score=23.60 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=43.0
Q ss_pred CCCEEEEecCCCCCCCCCCchhhhhhhhcccCCC--cEEEEecCCCCCCCCcCh---HHHHHHHHHHHhhhc
Q 038186 70 FIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSN--VKLIVLEGVRHCPHDDRP---ELVHENMLPWLAETF 136 (138)
Q Consensus 70 ~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~gH~~~~e~p---~~~~~~i~~fl~~~~ 136 (138)
.+-.+-|-|+.|.+...... +....+-..+|. .....-|++||+-...-. +.+...|.+|+.+..
T Consensus 339 ~~aL~tvEGEnDDIsgvGQT--kAA~~LC~nIpe~mk~hy~qp~vGHYGVFnGsrfr~eIvPri~dFI~~~d 408 (415)
T COG4553 339 NVALFTVEGENDDISGVGQT--KAAHDLCSNIPEDMKQHYMQPDVGHYGVFNGSRFREEIVPRIRDFIRRYD 408 (415)
T ss_pred ceeEEEeecccccccccchh--HHHHHHHhcChHHHHHHhcCCCCCccceeccchHHHHHHHHHHHHHHHhC
Confidence 46778899999998887753 211233334444 245577899998765433 667778888887643
No 160
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=41.27 E-value=1.1e+02 Score=21.25 Aligned_cols=55 Identities=11% Similarity=0.158 Sum_probs=34.9
Q ss_pred CCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecC-CCCCCC-CcChHHHHHHHHHHH
Q 038186 67 PTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEG-VRHCPH-DDRPELVHENMLPWL 132 (138)
Q Consensus 67 ~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~gH~~~-~e~p~~~~~~i~~fl 132 (138)
....+||.++.|++- . .+..++.+|++..+.++. .|++.- .-.|..+.+.|.+=.
T Consensus 144 g~~gVPV~lVsGDd~-~----------~~ea~~~~P~~~tv~vK~~~gr~aA~~~~p~~a~~~I~~aa 200 (270)
T cd08769 144 GEFGVPVVLVAGDSE-L----------EKEVKEETPWAVFVPTKESLSRYSAKSPSMKKVKEELREAV 200 (270)
T ss_pred hhcCCCEEEEecCHH-H----------HHHHHHhCCCceEEEEeeecCCCccccCCHHHHHHHHHHHH
Confidence 456899999999652 1 124556679988888874 354443 345666666665443
No 161
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=40.15 E-value=51 Score=22.14 Aligned_cols=31 Identities=13% Similarity=0.100 Sum_probs=22.2
Q ss_pred CcEEEEecCCCCCCCCcCh--HHHHHHHHHHHhh
Q 038186 103 NVKLIVLEGVRHCPHDDRP--ELVHENMLPWLAE 134 (138)
Q Consensus 103 ~~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~~ 134 (138)
+-..+.+|| ||.++.+-+ +.+.+.+..|.+.
T Consensus 96 dYDav~iPG-G~g~~~dl~~~~~l~~ll~~f~~~ 128 (232)
T cd03148 96 EYAAVFIPG-GHGALIGIPESQDVAAALQWAIKN 128 (232)
T ss_pred hceEEEECC-CCCChhhcccCHHHHHHHHHHHHc
Confidence 457789996 899886544 4577777777654
No 162
>cd00281 DAP_dppA Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacterized
Probab=38.97 E-value=93 Score=21.54 Aligned_cols=55 Identities=15% Similarity=0.136 Sum_probs=34.9
Q ss_pred CCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecC-CCCCCC-CcChHHHHHHHHHHH
Q 038186 67 PTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEG-VRHCPH-DDRPELVHENMLPWL 132 (138)
Q Consensus 67 ~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~gH~~~-~e~p~~~~~~i~~fl 132 (138)
....+||.++.|++-. .+..+..+|++..+.++. .|++.- --.|....+.|.+=.
T Consensus 143 g~~gVPV~lvsGDd~~-----------~~ea~~~~P~~~tv~vK~~~gr~aa~~~~p~~a~~~I~~~a 199 (265)
T cd00281 143 GYYGVPVVMVAGDAEV-----------CKEAKAYDAQVETVVTKKGMGRFSVKAPSPQKVLRAIREGT 199 (265)
T ss_pred hhcCCCEEEEecCHHH-----------HHHHHHhCCCceEEEEeeeeCCCccccCCHHHHHHHHHHHH
Confidence 4568999999996431 113445679988888874 354433 345666666665544
No 163
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=38.84 E-value=16 Score=26.49 Aligned_cols=52 Identities=15% Similarity=0.150 Sum_probs=25.7
Q ss_pred CCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcCh
Q 038186 66 MPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRP 121 (138)
Q Consensus 66 ~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p 121 (138)
...++.|+|+|..+. ....... ..++.+....++..++.+.|++|.-+-|-|
T Consensus 270 ~~~i~~P~L~InSe~-f~~~~~~---~~~~~~~~~~~~~~~~ti~gt~H~s~sD~~ 321 (379)
T PF03403_consen 270 YSKIPQPLLFINSES-FQWWENI---FRMKKVISNNKESRMLTIKGTAHLSFSDFP 321 (379)
T ss_dssp GGG--S-EEEEEETT-T--HHHH---HHHHTT--TTS-EEEEEETT--GGGGSGGG
T ss_pred ccCCCCCEEEEECcc-cCChhhH---HHHHHHhccCCCcEEEEECCCcCCCcchhh
Confidence 367899999998764 2211111 112233344567889999999998665443
No 164
>cd08663 DAP_dppA_1 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=37.88 E-value=1.1e+02 Score=21.20 Aligned_cols=55 Identities=11% Similarity=0.089 Sum_probs=35.3
Q ss_pred CCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecC-CCCCC-CCcChHHHHHHHHHHH
Q 038186 67 PTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEG-VRHCP-HDDRPELVHENMLPWL 132 (138)
Q Consensus 67 ~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~gH~~-~~e~p~~~~~~i~~fl 132 (138)
....+||.++.|++- . .+..++..|++..+.++. .|.+. -.-.|+...+.|.+=.
T Consensus 144 g~~gVPV~lVsGDd~--~---------~~ea~~~~p~i~tv~vK~~~gr~aa~~~~p~~a~~~I~~~a 200 (266)
T cd08663 144 GEYGVPVVLVTGDDA--A---------CAEARELGPGVETVAVKEAIGRFAARCLPPAEARALIREAA 200 (266)
T ss_pred hhcCCCEEEEecCHH--H---------HHHHHhhCCCcEEEEEecccCCCccccCCHHHHHHHHHHHH
Confidence 456899999999543 1 123445789988888874 34333 3446777777776544
No 165
>COG3347 Uncharacterized conserved protein [Function unknown]
Probab=36.50 E-value=69 Score=23.46 Aligned_cols=52 Identities=17% Similarity=0.160 Sum_probs=33.0
Q ss_pred CCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHhh
Q 038186 83 FTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLAE 134 (138)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 134 (138)
++.+....++...+..+..|+++.+++.+-|-+..-|.+.+.-+...+++++
T Consensus 162 YvrPGf~La~~iae~~~~~p~~~glvL~~HGL~t~gdtak~~Ye~~I~~V~~ 213 (404)
T COG3347 162 YVRPGFPLAKAIAERFKANPDAEGLVLENHGLFTFGDTAKEAYERMISIVNE 213 (404)
T ss_pred ccCCCchHHHHHHHHHhhCCCceEEEeccccceEecccHHHHHHHHHHHHHH
Confidence 3444443444434444567899999999867677778876665555555544
No 166
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=36.06 E-value=49 Score=16.99 Aligned_cols=17 Identities=24% Similarity=0.388 Sum_probs=9.1
Q ss_pred CCCcChHHHHHHHHHHH
Q 038186 116 PHDDRPELVHENMLPWL 132 (138)
Q Consensus 116 ~~~e~p~~~~~~i~~fl 132 (138)
|.+|+-..+..+|..||
T Consensus 22 P~WDQ~Rl~~aALa~FL 38 (57)
T PF10929_consen 22 PNWDQYRLFQAALAGFL 38 (57)
T ss_pred CCchHHHHHHHHHHHHH
Confidence 34555555555555555
No 167
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=35.91 E-value=36 Score=23.92 Aligned_cols=71 Identities=18% Similarity=0.330 Sum_probs=40.7
Q ss_pred cCcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHhhh
Q 038186 63 VQLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLAET 135 (138)
Q Consensus 63 ~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~~ 135 (138)
.+.+.++++|||=|++...+..-.. +..+....-+...++-+...+.+..|... ...+.+.+.|..||..+
T Consensus 239 ~~~la~l~iPvLDi~~~~~~~~~~~-a~~R~~~a~r~~~~~YrQ~~L~~~~~~~~-~~~~~l~~rIrGWL~~~ 309 (310)
T PF12048_consen 239 AEQLAQLKIPVLDIYSADNPASQQT-AKQRKQAAKRNKKPDYRQIQLPGLPDNPS-GWQEQLLRRIRGWLKRH 309 (310)
T ss_pred HHHhhccCCCEEEEecCCChHHHHH-HHHHHHHHHhccCCCceeEecCCCCCChh-hHHHHHHHHHHHHHHhh
Confidence 3566789999999998773322221 11111001112234556667776665443 22244889999999864
No 168
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=35.76 E-value=28 Score=25.13 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=17.5
Q ss_pred CCCCCCCEEEEecCCCCCCCCCC
Q 038186 66 MPTIFIPVLVLWGDKDPFTPLDG 88 (138)
Q Consensus 66 ~~~i~~Pvlii~G~~D~~~~~~~ 88 (138)
+....+|+.+|.|.+|..-....
T Consensus 71 l~~~~Ipv~~I~GNHD~~~~~~~ 93 (390)
T COG0420 71 LKDAGIPVVVIAGNHDSPSRLSE 93 (390)
T ss_pred hccCCCcEEEecCCCCchhcccc
Confidence 34477999999999997665443
No 169
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=35.65 E-value=37 Score=24.98 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=15.0
Q ss_pred CCCCCEEEEecCCCCCCC
Q 038186 68 TIFIPVLVLWGDKDPFTP 85 (138)
Q Consensus 68 ~i~~Pvlii~G~~D~~~~ 85 (138)
.+.+|+++|+|.+|.-..
T Consensus 108 ~~~iPVf~I~GNHD~p~~ 125 (405)
T TIGR00583 108 NVAIPVFSIHGNHDDPSG 125 (405)
T ss_pred cCCCCEEEEcCCCCCccc
Confidence 468999999999997543
No 170
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.91 E-value=91 Score=22.56 Aligned_cols=65 Identities=23% Similarity=0.258 Sum_probs=47.4
Q ss_pred CCCCEEEEecCCCCCCCCCCchhhhh-hhhcccCCCcEEEEecCCCCCCCC-cChHHHHHHHHHHHhhh
Q 038186 69 IFIPVLVLWGDKDPFTPLDGPVGKYF-SSLPSKLSNVKLIVLEGVRHCPHD-DRPELVHENMLPWLAET 135 (138)
Q Consensus 69 i~~Pvlii~G~~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~~ 135 (138)
...+.+.++|..|.+++.... +.+ .......-+++-+-+.++-|..+. ..|....+...+|++..
T Consensus 224 ~~~~~ly~~s~~d~v~~~~~i--e~f~~~~~~~g~~v~s~~~~ds~H~~h~r~~p~~y~~~~~~Fl~~~ 290 (350)
T KOG2521|consen 224 LPWNQLYLYSDNDDVLPADEI--EKFIALRREKGVNVKSVKFKDSEHVAHFRSFPKTYLKKCSEFLRSV 290 (350)
T ss_pred ccccceeecCCccccccHHHH--HHHHHHHHhcCceEEEeeccCccceeeeccCcHHHHHHHHHHHHhc
Confidence 357888999999999999863 222 233334445666667788898874 68999999999999763
No 171
>COG4844 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.51 E-value=75 Score=16.93 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=20.6
Q ss_pred CCCCCCcChHHHHHHHHHHHhhhcCC
Q 038186 113 RHCPHDDRPELVHENMLPWLAETFNF 138 (138)
Q Consensus 113 gH~~~~e~p~~~~~~i~~fl~~~~~~ 138 (138)
|-.+.-|.|++..+-|-.|+++..=|
T Consensus 53 GevV~Get~eeLv~NIY~~i~Enp~f 78 (78)
T COG4844 53 GEVVEGETPEELVENIYTFIEENPMF 78 (78)
T ss_pred CceecCCCHHHHHHHHHHHHhccCCC
Confidence 45556689999999999999987543
No 172
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=32.06 E-value=1.3e+02 Score=21.74 Aligned_cols=65 Identities=15% Similarity=0.047 Sum_probs=42.0
Q ss_pred CcCCCCCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHH
Q 038186 64 QLMPTIFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWL 132 (138)
Q Consensus 64 ~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl 132 (138)
..+.+++.||++|.- .|.-.+... ..|++......+..+..+.|+=|-.+-|-|-.+-..|..++
T Consensus 281 ~~~~~arqP~~finv-~~fQ~~en~---~vmKki~~~n~g~~~it~~GsVHqnfsDfpfv~p~~i~k~f 345 (399)
T KOG3847|consen 281 LQYSQARQPTLFINV-EDFQWNENL---LVMKKIESQNEGNHVITLDGSVHQNFSDFPFVTPNWIGKVF 345 (399)
T ss_pred hhhhhccCCeEEEEc-ccccchhHH---HHHHhhhCCCccceEEEEccceecccccCccccHHHHHHHh
Confidence 456788899999993 343333332 23455555555678889999999888777655555554444
No 173
>COG4099 Predicted peptidase [General function prediction only]
Probab=29.28 E-value=59 Score=23.21 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=21.9
Q ss_pred cCCCC-CCCEEEEecCCCCCCCCCCchhh
Q 038186 65 LMPTI-FIPVLVLWGDKDPFTPLDGPVGK 92 (138)
Q Consensus 65 ~~~~i-~~Pvlii~G~~D~~~~~~~~~~~ 92 (138)
.++.+ +.|..+.|+.+|+++|.+.+...
T Consensus 309 lv~~lk~~piWvfhs~dDkv~Pv~nSrv~ 337 (387)
T COG4099 309 LVRTLKKAPIWVFHSSDDKVIPVSNSRVL 337 (387)
T ss_pred hhhhhccCceEEEEecCCCccccCcceee
Confidence 33444 58999999999999999987433
No 174
>PF08384 NPP: Pro-opiomelanocortin, N-terminal region; InterPro: IPR013593 This domain represents the N-terminal peptide of pro-opiomelanocortin (NPP). It is thought to represent an important pituitary peptide, given its high yield from pituitary glands, and exhibits a potent in vitro aldosterone-stimulating activity [].
Probab=28.11 E-value=38 Score=16.43 Aligned_cols=14 Identities=21% Similarity=0.097 Sum_probs=9.4
Q ss_pred EEEEecCCCCCCCC
Q 038186 105 KLIVLEGVRHCPHD 118 (138)
Q Consensus 105 ~~~~i~~~gH~~~~ 118 (138)
+-=+|||-||+-+.
T Consensus 31 EsPv~PGn~hlQP~ 44 (45)
T PF08384_consen 31 ESPVFPGNGHLQPL 44 (45)
T ss_pred CCCccCCCcccCCC
Confidence 34478888887553
No 175
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.97 E-value=95 Score=21.33 Aligned_cols=57 Identities=16% Similarity=0.188 Sum_probs=34.0
Q ss_pred CCEEEEecC-CCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcCh--HHHHHHHHHHHhhh
Q 038186 71 IPVLVLWGD-KDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRP--ELVHENMLPWLAET 135 (138)
Q Consensus 71 ~Pvlii~G~-~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~~~ 135 (138)
+|+++-... .|...++.. .+...+.+...+.++ ++|+-+++.| +.+...|...+...
T Consensus 193 ~~~~~~~~r~~~~~~~~~~-------~W~~~~~~~~~~~i~-g~H~~ml~ep~~~~~~~~i~~~l~~~ 252 (257)
T COG3319 193 LPTLFAADRLHDEGFPPLA-------GWSGWIADLDIVRID-GTHFDMLKEPHVATVAPLILAALNAI 252 (257)
T ss_pred cceeeeccccccccCCCcC-------cHHHHhCCCCeeecc-ccHHHHhcchhhHHHHHHHHHHHhhc
Confidence 444443333 565666442 444555565565666 6899887766 66777777777653
No 176
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=27.95 E-value=76 Score=22.14 Aligned_cols=40 Identities=15% Similarity=0.215 Sum_probs=17.5
Q ss_pred CCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEec
Q 038186 70 FIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLE 110 (138)
Q Consensus 70 ~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 110 (138)
..|+.+.||-.|.-..+.. .+...+.+.+..|++.++.++
T Consensus 5 ~~PvViwHGmGD~~~~~~~-m~~i~~~i~~~~PG~yV~si~ 44 (279)
T PF02089_consen 5 PLPVVIWHGMGDSCCNPSS-MGSIKELIEEQHPGTYVHSIE 44 (279)
T ss_dssp S--EEEE--TT--S--TTT-HHHHHHHHHHHSTT--EEE--
T ss_pred CCcEEEEEcCccccCChhH-HHHHHHHHHHhCCCceEEEEE
Confidence 4799999999998765532 122223455678888777776
No 177
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=27.94 E-value=2.5e+02 Score=22.25 Aligned_cols=64 Identities=19% Similarity=0.107 Sum_probs=38.9
Q ss_pred CCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHH--HHHHHHHHhhh
Q 038186 71 IPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELV--HENMLPWLAET 135 (138)
Q Consensus 71 ~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~--~~~i~~fl~~~ 135 (138)
-||||-.|.+|.-+.|.++. +...++.+.-..+-+.+=-++||.---+..+.. ...+..||.+.
T Consensus 581 P~~LITTs~~DDRVHPaHar-Kfaa~L~e~~~pv~~~e~t~gGH~g~~~~~~~A~~~a~~~afl~r~ 646 (648)
T COG1505 581 PPTLITTSLHDDRVHPAHAR-KFAAKLQEVGAPVLLREETKGGHGGAAPTAEIARELADLLAFLLRT 646 (648)
T ss_pred CCeEEEcccccccccchHHH-HHHHHHHhcCCceEEEeecCCcccCCCChHHHHHHHHHHHHHHHHh
Confidence 48899999988888877753 233344444444445444468998765554422 23445676653
No 178
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=27.02 E-value=1.6e+02 Score=20.02 Aligned_cols=36 Identities=17% Similarity=0.391 Sum_probs=27.6
Q ss_pred hhhhcccCCCcEEEEecCCCCCCCCcCh-HHHHHHHH
Q 038186 94 FSSLPSKLSNVKLIVLEGVRHCPHDDRP-ELVHENML 129 (138)
Q Consensus 94 ~~~~~~~~~~~~~~~i~~~gH~~~~e~p-~~~~~~i~ 129 (138)
.+.+.+..|+.+++-+-+..|+|.-+++ +++.+.+.
T Consensus 14 ~~~l~~~~p~~~~iy~~D~~~~PYG~ks~~~i~~~~~ 50 (251)
T TIGR00067 14 LKEIRKQLPKEHYIYVGDTKRFPYGEKSPEFILEYVL 50 (251)
T ss_pred HHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHH
Confidence 3477788999999999999999997765 45544443
No 179
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=26.74 E-value=77 Score=20.08 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=25.2
Q ss_pred CCcEEEEecCCCCCCCCcCh-HHHHHHHHHHHhh
Q 038186 102 SNVKLIVLEGVRHCPHDDRP-ELVHENMLPWLAE 134 (138)
Q Consensus 102 ~~~~~~~i~~~gH~~~~e~p-~~~~~~i~~fl~~ 134 (138)
.+-..+++||+.|.+....+ +.+.+.+.+|.+.
T Consensus 65 ~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~ 98 (188)
T COG0693 65 ADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYAN 98 (188)
T ss_pred hHCCEEEECCCccchhhccCcHHHHHHHHHHHHc
Confidence 36778999974499988877 6777777777654
No 180
>PF06107 DUF951: Bacterial protein of unknown function (DUF951); InterPro: IPR009296 This family consists of several short hypothetical bacterial proteins of unknown function.
Probab=26.15 E-value=31 Score=17.69 Aligned_cols=28 Identities=11% Similarity=0.086 Sum_probs=18.4
Q ss_pred CCcEEEEecCCCCCCCCcChHHHHHHHHHH
Q 038186 102 SNVKLIVLEGVRHCPHDDRPELVHENMLPW 131 (138)
Q Consensus 102 ~~~~~~~i~~~gH~~~~e~p~~~~~~i~~f 131 (138)
.+.++. -.+|||.+++.+++ |...+...
T Consensus 28 aDikik-C~gCg~~imlpR~~-feK~~Kkv 55 (57)
T PF06107_consen 28 ADIKIK-CLGCGRQIMLPRSK-FEKRLKKV 55 (57)
T ss_pred CcEEEE-ECCCCCEEEEeHHH-HHHHHHHh
Confidence 344554 66899999988863 55555443
No 181
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=25.84 E-value=60 Score=21.58 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=14.5
Q ss_pred CcCCCCCCCEEEEecCCC
Q 038186 64 QLMPTIFIPVLVLWGDKD 81 (138)
Q Consensus 64 ~~~~~i~~Pvlii~G~~D 81 (138)
+-+..-.+||++|++..|
T Consensus 155 pNYPe~nlPTl~VY~~G~ 172 (240)
T KOG3170|consen 155 PNYPESNLPTLLVYHHGA 172 (240)
T ss_pred CCCcccCCCeEEEeecch
Confidence 445566899999999887
No 182
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=25.76 E-value=2.7e+02 Score=22.25 Aligned_cols=55 Identities=22% Similarity=0.236 Sum_probs=34.9
Q ss_pred CCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEe---cCCCCCCCCcChHHHHH
Q 038186 71 IPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVL---EGVRHCPHDDRPELVHE 126 (138)
Q Consensus 71 ~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~gH~~~~e~p~~~~~ 126 (138)
.|+|++.|..|+-+.-=.. ++|+.+++..-.+.....+ -++||.-.--+.+...+
T Consensus 610 P~ilv~~Gl~D~rV~YwEp-AKWvAkLR~~~td~~plLlkt~M~aGHgG~SgRf~~lee 667 (682)
T COG1770 610 PAILVTTGLNDPRVQYWEP-AKWVAKLRELKTDGNPLLLKTNMDAGHGGASGRFQRLEE 667 (682)
T ss_pred CceEEEccccCCccccchH-HHHHHHHhhcccCCCcEEEEecccccCCCCCCchHHHHH
Confidence 5889999999987765543 4566677665555433332 36899766555544433
No 183
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=25.09 E-value=99 Score=20.75 Aligned_cols=31 Identities=16% Similarity=0.168 Sum_probs=21.4
Q ss_pred CcEEEEecCCCCCCCCcCh--HHHHHHHHHHHhh
Q 038186 103 NVKLIVLEGVRHCPHDDRP--ELVHENMLPWLAE 134 (138)
Q Consensus 103 ~~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~~ 134 (138)
+-..+++|| ||.++.+-+ +.+.+.|..|.+.
T Consensus 94 dYDav~iPG-G~g~~~dl~~~~~l~~ll~~f~~~ 126 (231)
T cd03147 94 DYGIFFVAG-GHGTLFDFPHATNLQKIAQQIYAN 126 (231)
T ss_pred hCcEEEECC-CCchhhhcccCHHHHHHHHHHHHc
Confidence 456789996 788754433 4577788887764
No 184
>COG3411 Ferredoxin [Energy production and conversion]
Probab=24.15 E-value=1.2e+02 Score=15.94 Aligned_cols=30 Identities=17% Similarity=0.024 Sum_probs=22.2
Q ss_pred cEEEEecCCCCCCCCcChHHHHHHHHHHHhh
Q 038186 104 VKLIVLEGVRHCPHDDRPELVHENMLPWLAE 134 (138)
Q Consensus 104 ~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 134 (138)
--++++|+ |+|...-.|+..-+.+.+.+..
T Consensus 18 Pvl~vYpe-gvWY~~V~p~~a~rIv~~hl~~ 47 (64)
T COG3411 18 PVLVVYPE-GVWYTRVDPEDARRIVQSHLLG 47 (64)
T ss_pred CEEEEecC-CeeEeccCHHHHHHHHHHHHhC
Confidence 34667775 7998888888887777777753
No 185
>PRK04155 chaperone protein HchA; Provisional
Probab=23.75 E-value=84 Score=21.95 Aligned_cols=31 Identities=19% Similarity=0.150 Sum_probs=21.0
Q ss_pred CcEEEEecCCCCCCCCcCh--HHHHHHHHHHHhh
Q 038186 103 NVKLIVLEGVRHCPHDDRP--ELVHENMLPWLAE 134 (138)
Q Consensus 103 ~~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~~ 134 (138)
+-..+++|| ||..+.+-| +.+.+.|..|.+.
T Consensus 147 dYDaV~iPG-G~g~~~dL~~~~~l~~ll~~~~~~ 179 (287)
T PRK04155 147 DYAAVFIPG-GHGALIGLPESEDVAAALQWALDN 179 (287)
T ss_pred cccEEEECC-CCchHHHHhhCHHHHHHHHHHHHc
Confidence 456788996 898765433 4577777777654
No 186
>PLN02606 palmitoyl-protein thioesterase
Probab=23.64 E-value=1.4e+02 Score=21.28 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=24.0
Q ss_pred CcEEEEecCCCCCCCCcChHHHHHHHHHHHhhhc
Q 038186 103 NVKLIVLEGVRHCPHDDRPELVHENMLPWLAETF 136 (138)
Q Consensus 103 ~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~~~ 136 (138)
+..+..+|| .|+-. ..+.+.+.|..||....
T Consensus 267 kl~f~~v~G-~Hl~~--~~~~~~~~i~pyL~~~~ 297 (306)
T PLN02606 267 KVKFISVPG-GHIEI--AEEDLVKYVVPYLQNES 297 (306)
T ss_pred CeEEEecCC-chhee--cHHHHHHHHHHHhccCC
Confidence 467778887 89855 56789999999997654
No 187
>PRK00865 glutamate racemase; Provisional
Probab=23.04 E-value=2.1e+02 Score=19.54 Aligned_cols=35 Identities=14% Similarity=0.306 Sum_probs=26.8
Q ss_pred hhhhcccCCCcEEEEecCCCCCCCCcCh-HHHHHHH
Q 038186 94 FSSLPSKLSNVKLIVLEGVRHCPHDDRP-ELVHENM 128 (138)
Q Consensus 94 ~~~~~~~~~~~~~~~i~~~gH~~~~e~p-~~~~~~i 128 (138)
++.+.+.+|+.+++-+-+..|+|.-+++ +++.+.+
T Consensus 21 l~~i~~~lp~~~~iY~~D~~~~PYG~ks~~~i~~~~ 56 (261)
T PRK00865 21 LREIRRLLPDEHIIYVGDTARFPYGEKSEEEIRERT 56 (261)
T ss_pred HHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHH
Confidence 3577889999999999999999997765 4444433
No 188
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=23.02 E-value=1.3e+02 Score=21.27 Aligned_cols=56 Identities=11% Similarity=-0.046 Sum_probs=36.9
Q ss_pred ecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHHhh
Q 038186 77 WGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWLAE 134 (138)
Q Consensus 77 ~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 134 (138)
.++.|.++-...+. |-...+....+.++..+|+.||=-..=.|+...+.|.+--++
T Consensus 97 ~~~gd~vV~D~~aH--YttyvAAEragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~ 152 (382)
T COG1103 97 CKEGDWVVVDSLAH--YTTYVAAERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDE 152 (382)
T ss_pred ccCCCEEEEcCcch--HHHHHHHHhcCCeEEecCCCCCCceEecHHHHHHHHHHHHhc
Confidence 34555555444332 323444445578999999999877777888888888776554
No 189
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=22.74 E-value=3.4e+02 Score=20.47 Aligned_cols=64 Identities=13% Similarity=0.081 Sum_probs=32.3
Q ss_pred CCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCC-----cChHHHHHHHHHHHhh
Q 038186 70 FIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHD-----DRPELVHENMLPWLAE 134 (138)
Q Consensus 70 ~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~-----e~p~~~~~~i~~fl~~ 134 (138)
..|+++|||-.+......+. .+..+.+....++.+++.++-.||.-.. .....+.+.+.++++.
T Consensus 41 ~ptvIlIHG~~~s~~~~~w~-~~l~~al~~~~~d~nVI~VDw~g~g~s~y~~a~~~t~~vg~~la~lI~~ 109 (442)
T TIGR03230 41 TKTFIVIHGWTVTGMFESWV-PKLVAALYEREPSANVIVVDWLSRAQQHYPTSAAYTKLVGKDVAKFVNW 109 (442)
T ss_pred CCeEEEECCCCcCCcchhhH-HHHHHHHHhccCCCEEEEEECCCcCCCCCccccccHHHHHHHHHHHHHH
Confidence 45789999987632111221 1111122222346788888877665321 1224455556665553
No 190
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.27 E-value=1.9e+02 Score=17.37 Aligned_cols=62 Identities=18% Similarity=0.182 Sum_probs=33.2
Q ss_pred EEEEecCCCCCCCCCC-----chhhhhhhhcccCCCcEEEEecCCCCCCC--CcChHHHHHHHHHHHhh
Q 038186 73 VLVLWGDKDPFTPLDG-----PVGKYFSSLPSKLSNVKLIVLEGVRHCPH--DDRPELVHENMLPWLAE 134 (138)
Q Consensus 73 vlii~G~~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~gH~~~--~e~p~~~~~~i~~fl~~ 134 (138)
+.+..|.+|....... ...+..+.++...|++.++++.-...... .+....+++.+.+.+++
T Consensus 44 vvi~~G~ND~~~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~n~~l~~~~~~ 112 (157)
T cd01833 44 VLLHLGTNDLVLNRDPDTAPDRLRALIDQMRAANPDVKIIVATLIPTTDASGNARIAEYNAAIPGVVAD 112 (157)
T ss_pred EEEeccCcccccCCCHHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcchhHHHHHHHHHHHHHHHH
Confidence 4555788887654221 11122334455678888776532211111 23456777777777765
No 191
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=22.12 E-value=2.5e+02 Score=19.61 Aligned_cols=34 Identities=15% Similarity=0.355 Sum_probs=26.3
Q ss_pred hhhhcccCCCcEEEEecCCCCCCCCcCh-HHHHHH
Q 038186 94 FSSLPSKLSNVKLIVLEGVRHCPHDDRP-ELVHEN 127 (138)
Q Consensus 94 ~~~~~~~~~~~~~~~i~~~gH~~~~e~p-~~~~~~ 127 (138)
.+.+.+.+|+-+++-+-+.+++|.-+.+ +.+.+.
T Consensus 21 lrei~~~LP~e~~iY~~D~a~~PYG~ks~e~I~~~ 55 (269)
T COG0796 21 LREIRRQLPDEDIIYVGDTARFPYGEKSEEEIRER 55 (269)
T ss_pred HHHHHHHCCCCcEEEEecCCCCCCCCCCHHHHHHH
Confidence 3578889999999999889999997766 344443
No 192
>PLN00180 NDF6 (NDH-dependent flow 6); Provisional
Probab=22.04 E-value=98 Score=19.54 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=21.9
Q ss_pred EEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcC
Q 038186 73 VLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDR 120 (138)
Q Consensus 73 vlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~ 120 (138)
+++....+||+...+ .++....+ |.|||+...+
T Consensus 112 ~~fFgSmKDPfYDSe--------~YRgdGGD-------GT~hW~Yd~Q 144 (180)
T PLN00180 112 CLFFGSMKDPFYDSE--------EYRGDGGD-------GTGHWVYERQ 144 (180)
T ss_pred HhheeccCCcccchH--------HhcccCCC-------CceeeEeehH
Confidence 355666789888877 55554443 7889987544
No 193
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=21.47 E-value=1.2e+02 Score=21.69 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=18.6
Q ss_pred hhcccCCCcEEEEecCCCCCCCCc
Q 038186 96 SLPSKLSNVKLIVLEGVRHCPHDD 119 (138)
Q Consensus 96 ~~~~~~~~~~~~~i~~~gH~~~~e 119 (138)
.+....++..++++|++||....+
T Consensus 242 ~L~~~~~~~~llvYPNsGe~yd~~ 265 (317)
T KOG1579|consen 242 ELMAKLTKIPLLVYPNSGEVYDNE 265 (317)
T ss_pred HHhhccCCCeEEEecCCCCCCccc
Confidence 344567889999999999987654
No 194
>PRK06007 fliF flagellar MS-ring protein; Reviewed
Probab=21.20 E-value=71 Score=24.54 Aligned_cols=17 Identities=35% Similarity=0.726 Sum_probs=14.8
Q ss_pred CcChHHHHHHHHHHHhh
Q 038186 118 DDRPELVHENMLPWLAE 134 (138)
Q Consensus 118 ~e~p~~~~~~i~~fl~~ 134 (138)
.++|+++++.|+.||.+
T Consensus 524 ~e~PeevA~ilr~Wl~e 540 (542)
T PRK06007 524 KEDPEEVAQVLRTWLSE 540 (542)
T ss_pred HhCHHHHHHHHHHHhcC
Confidence 48899999999999965
No 195
>PF14553 YqbF: YqbF, hypothetical protein domain; PDB: 2HJQ_A.
Probab=21.09 E-value=7.4 Score=18.71 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=18.3
Q ss_pred CCCCCCcChHHHHHHHHHHHhhhcCC
Q 038186 113 RHCPHDDRPELVHENMLPWLAETFNF 138 (138)
Q Consensus 113 gH~~~~e~p~~~~~~i~~fl~~~~~~ 138 (138)
||..-...++.|++.+.++|.+..-|
T Consensus 10 g~~F~~g~ee~V~kk~y~YL~~ne~F 35 (43)
T PF14553_consen 10 GHRFLLGQEEKVSKKIYNYLNDNEFF 35 (43)
T ss_dssp TEEEEBT-EEEE-HHHHHHHHHSTTE
T ss_pred eeEEeCCCeeehhHHHHHHHhcCCcE
Confidence 56666777888999999999877544
No 196
>COG2808 PaiB Transcriptional regulator [Transcription]
Probab=20.68 E-value=2.7e+02 Score=18.53 Aligned_cols=61 Identities=15% Similarity=0.143 Sum_probs=41.3
Q ss_pred CCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEEEEecCCCCCCCCcChHHHHHHHHHHH
Q 038186 70 FIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKLIVLEGVRHCPHDDRPELVHENMLPWL 132 (138)
Q Consensus 70 ~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl 132 (138)
..|+|+|.-.-|.++.+.+=..+ +.-.+..|.-.+..+.--|-.-+.+..+.+...+....
T Consensus 71 ~~~vLvvFqgpdAYISP~WY~sK--~e~~~~VPTWNY~aVHayG~~~~~~D~~~~~~~~~~Lt 131 (209)
T COG2808 71 GQPVLVVFQGPDAYISPAWYPSK--RETPKVVPTWNYVAVHAYGTVRIIEDDEWLRELLARLT 131 (209)
T ss_pred CCeEEEEEeCCCcccCccccccc--ccCCCcCCCcceEEEEEecceeeeccHHHHHHHHHHHH
Confidence 57999999999999999961000 01223567777777765577777888877766655444
No 197
>PLN02633 palmitoyl protein thioesterase family protein
Probab=20.41 E-value=1.3e+02 Score=21.38 Aligned_cols=59 Identities=14% Similarity=0.209 Sum_probs=33.1
Q ss_pred CCCCEEEEecCCCCCCCCCCchhhhhhhhcccCCCcEE--EEecCC---CCCC-CCcChHHHHHHHHH
Q 038186 69 IFIPVLVLWGDKDPFTPLDGPVGKYFSSLPSKLSNVKL--IVLEGV---RHCP-HDDRPELVHENMLP 130 (138)
Q Consensus 69 i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~---gH~~-~~e~p~~~~~~i~~ 130 (138)
...|+.+.||-.|.-..+.+. .. ..+.+..|+... +.+.+. |=+. ..++-+.+.+.|.+
T Consensus 24 ~~~P~ViwHG~GD~c~~~g~~--~~-~~l~~~~~g~~~~~i~ig~~~~~s~~~~~~~Qve~vce~l~~ 88 (314)
T PLN02633 24 VSVPFIMLHGIGTQCSDATNA--NF-TQLLTNLSGSPGFCLEIGNGVGDSWLMPLTQQAEIACEKVKQ 88 (314)
T ss_pred CCCCeEEecCCCcccCCchHH--HH-HHHHHhCCCCceEEEEECCCccccceeCHHHHHHHHHHHHhh
Confidence 357999999999998887543 22 244455666433 344331 2221 23444555555544
No 198
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=20.24 E-value=46 Score=19.71 Aligned_cols=33 Identities=12% Similarity=0.073 Sum_probs=20.7
Q ss_pred CcEEEEecCCCCCCCC-c--ChHHHHHHHHHHHhhhcC
Q 038186 103 NVKLIVLEGVRHCPHD-D--RPELVHENMLPWLAETFN 137 (138)
Q Consensus 103 ~~~~~~i~~~gH~~~~-e--~p~~~~~~i~~fl~~~~~ 137 (138)
++...++|| |++... + .+.. .+.|.+|+++-.+
T Consensus 44 ~ad~lVlPG-Ga~~~~~~~L~~~g-~~~i~~~v~~g~p 79 (114)
T cd03144 44 KTALLVVPG-GADLPYCRALNGKG-NRRIRNFVRNGGN 79 (114)
T ss_pred CCCEEEECC-CChHHHHHHHHhhC-cHHHHHHHHCCCc
Confidence 678899999 988542 1 1122 6777777754333
No 199
>COG3910 Predicted ATPase [General function prediction only]
Probab=20.16 E-value=2.3e+02 Score=18.99 Aligned_cols=36 Identities=6% Similarity=0.079 Sum_probs=25.9
Q ss_pred ccCCCcEEEEecCCCCCCC-CcChHHHHHHHHHHHhhh
Q 038186 99 SKLSNVKLIVLEGVRHCPH-DDRPELVHENMLPWLAET 135 (138)
Q Consensus 99 ~~~~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 135 (138)
-.+|++++..+...||-.. .|..+.+ +.+++|+++-
T Consensus 191 lAiP~A~I~~~~~~g~~~~~fe~te~~-r~lR~Fl~dp 227 (233)
T COG3910 191 LAIPGAEIYEISESGIEERDFEETEHF-RALRDFLNDP 227 (233)
T ss_pred eeCCCcEEEEEecCCccccchHHHHHH-HHHHHHHhCH
Confidence 3579999999998887654 4454444 6778888764
Done!