BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038187
(560 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 162 bits (409), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 153/522 (29%), Positives = 226/522 (43%), Gaps = 58/522 (11%)
Query: 79 SAGSVTGVSLLLYENDNIKGELGRFNFSC--FPNLKKMGRLRNLVHLDLSDNYIEGYILP 136
SA S++G +++ + + GEL S + R NL LD+S N I P
Sbjct: 156 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI-P 214
Query: 137 TLGHXXXXXXXXXXXXXXDGNIPSTLGHLTRLTTLAIASNQINSSIP-LEIENLNFLQVL 195
LG G+ + T L L I+SNQ IP L +++L Q L
Sbjct: 215 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSL---QYL 271
Query: 196 DLSRNEIGGSIPSTL-GHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSI 254
L+ N+ G IP L G L LDLS N G +P G + L + SN +G +
Sbjct: 272 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 331
Query: 255 PLE-IGNFNFLQVLDLSYNKLEGPIPSTIANLV--------------------------- 286
P++ + L+VLDLS+N+ G +P ++ NL
Sbjct: 332 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 391
Query: 287 NLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRI 346
L L+L NN TG IP TL + + L SL LS N L G IPSS+G L++L + N +
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 451
Query: 347 NGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLN 406
G IP E+ L+ L L +N L G IPS +++ NL + L NN TG IP +G L
Sbjct: 452 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 511
Query: 407 RLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGN---------LKHVE 457
L L LS N+ G IP+ +G L D+++N NG+IP + +
Sbjct: 512 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 571
Query: 458 DVYLFNNKLDGPIPPQXXXXXXXXXXXXXXXXXXXXIPSEIGKL-------------KEL 504
VY+ N+ + P I +
Sbjct: 572 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 631
Query: 505 YYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLYGSIPESL 546
+LD+S N ++G IP ++G +P + +NL N++ GSIP+ +
Sbjct: 632 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 673
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 138/388 (35%), Positives = 195/388 (50%), Gaps = 12/388 (3%)
Query: 167 RLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNEL 226
L LAI+ N+I+ + ++ L+ LD+S N IP LG L+ LD+S N+L
Sbjct: 176 ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKL 232
Query: 227 VGPIPSSLGHLTELTFFNIYSNRINGSIP-LEIGNFNFLQVLDLSYNKLEGPIPSTIANL 285
G ++ TEL NI SN+ G IP L + + LQ L L+ NK G IP ++
Sbjct: 233 SGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKS---LQYLSLAENKFTGEIPDFLSGA 289
Query: 286 VN-LTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIP-SSMGHLARLTTFDMHS 343
+ LT L L N G +P G + L SL LS NN G +P ++ + L D+
Sbjct: 290 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 349
Query: 344 NRINGSIPLEIGNFNF-LQVLDLSYNKLEGPI-PSTIASLVN-LTSLFLCNNSQTGFIPS 400
N +G +P + N + L LDLS N GPI P+ + N L L+L NN TG IP
Sbjct: 350 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 409
Query: 401 TLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVY 460
TL + + L SL LS N L G IPSS+G L++L + N + G IP E+ +K +E +
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 469
Query: 461 LFNNKLDGPIPPQXXXXXXXXXXXXXXXXXXXXIPSEIGKLKELYYLDLSQNFINGKIPS 520
L N L G IP IP IG+L+ L L LS N +G IP+
Sbjct: 470 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529
Query: 521 QLGEIPSIDTVNLCTNNLYGSIPESLRK 548
+LG+ S+ ++L TN G+IP ++ K
Sbjct: 530 ELGDCRSLIWLDLNTNLFNGTIPAAMFK 557
Score = 152 bits (383), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 132/431 (30%), Positives = 182/431 (42%), Gaps = 74/431 (17%)
Query: 115 GRLRNLVHLDLSDNYIEGYILPTLGHXXXXXXXXXXXXXXDGNIP-STLGHLTRLTTLAI 173
G L LDLS N+ G + P G G +P TL + L L +
Sbjct: 288 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 347
Query: 174 ASNQINSSIPLEIENL---------------------------NFLQVLDLSRNEIGGSI 206
+ N+ + +P + NL N LQ L L N G I
Sbjct: 348 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 407
Query: 207 PSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQV 266
P TL + L SL LS N L G IPSSLG L++L ++ N + G IP E+ L+
Sbjct: 408 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 467
Query: 267 LDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPI 326
L L +N L G IPS ++N NL + L NN TG IP +G L L L LS N+ G I
Sbjct: 468 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 527
Query: 327 PSSMGHLARLTTFDMHSNRINGSIPLEI--------GNF--------------------- 357
P+ +G L D+++N NG+IP + NF
Sbjct: 528 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 587
Query: 358 ----NFLQVLDLSYNKLEGPIPSTIASLV-----------NLTSLFL--CNNSQTGFIPS 400
F + N+L P I S V N + +FL N +G+IP
Sbjct: 588 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 647
Query: 401 TLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVY 460
+G + L L+L N++ G IP VG L L D+ SN+++G IP + L + ++
Sbjct: 648 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 707
Query: 461 LFNNKLDGPIP 471
L NN L GPIP
Sbjct: 708 LSNNNLSGPIP 718
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 119/369 (32%), Positives = 172/369 (46%), Gaps = 25/369 (6%)
Query: 120 LVHLDLSDNYIEGYILPTLGH--XXXXXXXXXXXXXXDGNIPSTLGHLTRLTTLAIASNQ 177
L+ LDLS N G ILP L G IP TL + + L +L ++ N
Sbjct: 367 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 426
Query: 178 INSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHL 237
++ +IP + +L+ L+ L L N + G IP L ++K L +L L N+L G IPS L +
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 486
Query: 238 TELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNS 297
T L + ++ +NR+ G IP IG L +L LS N G IP+ + + +L L L N
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 546
Query: 298 QTGFIPSTL-GHLNRLTSLDLSGNNLV-----GPIPSSMG-------------HLARLTT 338
G IP+ + ++ + ++G V G G L RL+T
Sbjct: 547 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 606
Query: 339 ---FDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQT 395
++ S G N + LD+SYN L G IP I S+ L L L +N +
Sbjct: 607 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 666
Query: 396 GFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKH 455
G IP +G L L LDLS N L G IP ++ LT LT D+ +N ++G IP E+G +
Sbjct: 667 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFET 725
Query: 456 VEDVYLFNN 464
NN
Sbjct: 726 FPPAKFLNN 734
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 127/407 (31%), Positives = 186/407 (45%), Gaps = 48/407 (11%)
Query: 160 STLGHLTRLTTLAIASNQINSSIPLEIE---NLNFLQVLDLSRNEIGGS------IPSTL 210
++LG + L L ++SN ++ P ++ LN L+VLDLS N I G+ +
Sbjct: 117 TSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 174
Query: 211 GHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLS 270
G LK L +S N++ G + S L F ++ SN + IP +G+ + LQ LD+S
Sbjct: 175 GELKHLA---ISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDIS 228
Query: 271 YNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSM 330
NKL G I+ L L++S N VGPIP
Sbjct: 229 GNKLSGDFSRAISTCT------------------------ELKLLNISSNQFVGPIPPL- 263
Query: 331 GHLARLTTFDMHSNRINGSIPLEI-GNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFL 389
L L + N+ G IP + G + L LDLS N G +P S L SL L
Sbjct: 264 -PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 322
Query: 390 CNNSQTGFIP-STLGHLNRLTSLDLSGNNLVGPIPSSVGHLT-QLTTFDMHSNRINGSI- 446
+N+ +G +P TL + L LDLS N G +P S+ +L+ L T D+ SN +G I
Sbjct: 323 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 382
Query: 447 PLEIGNLKH-VEDVYLFNNKLDGPIPPQXXXXXXXXXXXXXXXXXXXXIPSEIGKLKELY 505
P N K+ ++++YL NN G IPP IPS +G L +L
Sbjct: 383 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 442
Query: 506 YLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLYGSIPESLRKVPSL 552
L L N + G+IP +L + +++T+ L N+L G IP L +L
Sbjct: 443 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 489
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 123/290 (42%), Gaps = 47/290 (16%)
Query: 114 MGRLRNLVHLDLSDNYIEGYILPTLGHXXXXXXXXXXXXXXDGNIPSTLGHLTRLTTLAI 173
+G L L L L N +EG I L + G IPS L + T L +++
Sbjct: 435 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 494
Query: 174 ASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSS 233
++N++ IP I L L +L LS N G+IP+ LG + L LDL+ N G IP++
Sbjct: 495 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Query: 234 L------------------------------GHLTELTFFNIYSNRIN------------ 251
+ G L F I S ++N
Sbjct: 555 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 614
Query: 252 ----GSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLG 307
G N + LD+SYN L G IP I ++ L L L +N +G IP +G
Sbjct: 615 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 674
Query: 308 HLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNF 357
L L LDLS N L G IP +M L LT D+ +N ++G IP E+G F
Sbjct: 675 DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQF 723
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 3/156 (1%)
Query: 79 SAGSVTGVSLLLYENDNIKGEL-GRFNFSCFPNLK--KMGRLRNLVHLDLSDNYIEGYIL 135
+A + G + +ND +K E G N F ++ ++ RL +++ G+
Sbjct: 563 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 622
Query: 136 PTLGHXXXXXXXXXXXXXXDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVL 195
PT + G IP +G + L L + N I+ SIP E+ +L L +L
Sbjct: 623 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 682
Query: 196 DLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIP 231
DLS N++ G IP + L L +DLS N L GPIP
Sbjct: 683 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 161 bits (408), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 153/522 (29%), Positives = 226/522 (43%), Gaps = 58/522 (11%)
Query: 79 SAGSVTGVSLLLYENDNIKGELGRFNFSC--FPNLKKMGRLRNLVHLDLSDNYIEGYILP 136
SA S++G +++ + + GEL S + R NL LD+S N I P
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI-P 217
Query: 137 TLGHXXXXXXXXXXXXXXDGNIPSTLGHLTRLTTLAIASNQINSSIP-LEIENLNFLQVL 195
LG G+ + T L L I+SNQ IP L +++L Q L
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSL---QYL 274
Query: 196 DLSRNEIGGSIPSTL-GHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSI 254
L+ N+ G IP L G L LDLS N G +P G + L + SN +G +
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 255 PLE-IGNFNFLQVLDLSYNKLEGPIPSTIANLV--------------------------- 286
P++ + L+VLDLS+N+ G +P ++ NL
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394
Query: 287 NLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRI 346
L L+L NN TG IP TL + + L SL LS N L G IPSS+G L++L + N +
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Query: 347 NGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLN 406
G IP E+ L+ L L +N L G IPS +++ NL + L NN TG IP +G L
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514
Query: 407 RLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGN---------LKHVE 457
L L LS N+ G IP+ +G L D+++N NG+IP + +
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574
Query: 458 DVYLFNNKLDGPIPPQXXXXXXXXXXXXXXXXXXXXIPSEIGKL-------------KEL 504
VY+ N+ + P I +
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634
Query: 505 YYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLYGSIPESL 546
+LD+S N ++G IP ++G +P + +NL N++ GSIP+ +
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 138/388 (35%), Positives = 195/388 (50%), Gaps = 12/388 (3%)
Query: 167 RLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNEL 226
L LAI+ N+I+ + ++ L+ LD+S N IP LG L+ LD+S N+L
Sbjct: 179 ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKL 235
Query: 227 VGPIPSSLGHLTELTFFNIYSNRINGSIP-LEIGNFNFLQVLDLSYNKLEGPIPSTIANL 285
G ++ TEL NI SN+ G IP L + + LQ L L+ NK G IP ++
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKS---LQYLSLAENKFTGEIPDFLSGA 292
Query: 286 VN-LTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIP-SSMGHLARLTTFDMHS 343
+ LT L L N G +P G + L SL LS NN G +P ++ + L D+
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352
Query: 344 NRINGSIPLEIGNFNF-LQVLDLSYNKLEGPI-PSTIASLVN-LTSLFLCNNSQTGFIPS 400
N +G +P + N + L LDLS N GPI P+ + N L L+L NN TG IP
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
Query: 401 TLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVY 460
TL + + L SL LS N L G IPSS+G L++L + N + G IP E+ +K +E +
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472
Query: 461 LFNNKLDGPIPPQXXXXXXXXXXXXXXXXXXXXIPSEIGKLKELYYLDLSQNFINGKIPS 520
L N L G IP IP IG+L+ L L LS N +G IP+
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
Query: 521 QLGEIPSIDTVNLCTNNLYGSIPESLRK 548
+LG+ S+ ++L TN G+IP ++ K
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFK 560
Score = 152 bits (383), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 132/431 (30%), Positives = 182/431 (42%), Gaps = 74/431 (17%)
Query: 115 GRLRNLVHLDLSDNYIEGYILPTLGHXXXXXXXXXXXXXXDGNIP-STLGHLTRLTTLAI 173
G L LDLS N+ G + P G G +P TL + L L +
Sbjct: 291 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350
Query: 174 ASNQINSSIPLEIENL---------------------------NFLQVLDLSRNEIGGSI 206
+ N+ + +P + NL N LQ L L N G I
Sbjct: 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410
Query: 207 PSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQV 266
P TL + L SL LS N L G IPSSLG L++L ++ N + G IP E+ L+
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470
Query: 267 LDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPI 326
L L +N L G IPS ++N NL + L NN TG IP +G L L L LS N+ G I
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530
Query: 327 PSSMGHLARLTTFDMHSNRINGSIPLEI--------GNF--------------------- 357
P+ +G L D+++N NG+IP + NF
Sbjct: 531 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 590
Query: 358 ----NFLQVLDLSYNKLEGPIPSTIASLV-----------NLTSLFL--CNNSQTGFIPS 400
F + N+L P I S V N + +FL N +G+IP
Sbjct: 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650
Query: 401 TLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVY 460
+G + L L+L N++ G IP VG L L D+ SN+++G IP + L + ++
Sbjct: 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710
Query: 461 LFNNKLDGPIP 471
L NN L GPIP
Sbjct: 711 LSNNNLSGPIP 721
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 119/369 (32%), Positives = 173/369 (46%), Gaps = 25/369 (6%)
Query: 120 LVHLDLSDNYIEGYILPTLGH--XXXXXXXXXXXXXXDGNIPSTLGHLTRLTTLAIASNQ 177
L+ LDLS N G ILP L G IP TL + + L +L ++ N
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429
Query: 178 INSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHL 237
++ +IP + +L+ L+ L L N + G IP L ++K L +L L N+L G IPS L +
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489
Query: 238 TELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNS 297
T L + ++ +NR+ G IP IG L +L LS N G IP+ + + +L L L N
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549
Query: 298 QTGFIPSTL-GHLNRLTSLDLSGNNLV--------------GPIPSSMG----HLARLTT 338
G IP+ + ++ + ++G V G + G L RL+T
Sbjct: 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609
Query: 339 ---FDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQT 395
++ S G N + LD+SYN L G IP I S+ L L L +N +
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669
Query: 396 GFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKH 455
G IP +G L L LDLS N L G IP ++ LT LT D+ +N ++G IP E+G +
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFET 728
Query: 456 VEDVYLFNN 464
NN
Sbjct: 729 FPPAKFLNN 737
Score = 112 bits (280), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 127/407 (31%), Positives = 186/407 (45%), Gaps = 48/407 (11%)
Query: 160 STLGHLTRLTTLAIASNQINSSIPLEIE---NLNFLQVLDLSRNEIGGS------IPSTL 210
++LG + L L ++SN ++ P ++ LN L+VLDLS N I G+ +
Sbjct: 120 TSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177
Query: 211 GHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLS 270
G LK L +S N++ G + S L F ++ SN + IP +G+ + LQ LD+S
Sbjct: 178 GELKHLA---ISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDIS 231
Query: 271 YNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSM 330
NKL G I+ L L++S N VGPIP
Sbjct: 232 GNKLSGDFSRAISTCT------------------------ELKLLNISSNQFVGPIPPL- 266
Query: 331 GHLARLTTFDMHSNRINGSIPLEI-GNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFL 389
L L + N+ G IP + G + L LDLS N G +P S L SL L
Sbjct: 267 -PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325
Query: 390 CNNSQTGFIP-STLGHLNRLTSLDLSGNNLVGPIPSSVGHLT-QLTTFDMHSNRINGSI- 446
+N+ +G +P TL + L LDLS N G +P S+ +L+ L T D+ SN +G I
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385
Query: 447 PLEIGNLKH-VEDVYLFNNKLDGPIPPQXXXXXXXXXXXXXXXXXXXXIPSEIGKLKELY 505
P N K+ ++++YL NN G IPP IPS +G L +L
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445
Query: 506 YLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLYGSIPESLRKVPSL 552
L L N + G+IP +L + +++T+ L N+L G IP L +L
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 123/290 (42%), Gaps = 47/290 (16%)
Query: 114 MGRLRNLVHLDLSDNYIEGYILPTLGHXXXXXXXXXXXXXXDGNIPSTLGHLTRLTTLAI 173
+G L L L L N +EG I L + G IPS L + T L +++
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497
Query: 174 ASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSS 233
++N++ IP I L L +L LS N G+IP+ LG + L LDL+ N G IP++
Sbjct: 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Query: 234 L------------------------------GHLTELTFFNIYSNRIN------------ 251
+ G L F I S ++N
Sbjct: 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617
Query: 252 ----GSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLG 307
G N + LD+SYN L G IP I ++ L L L +N +G IP +G
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 677
Query: 308 HLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNF 357
L L LDLS N L G IP +M L LT D+ +N ++G IP E+G F
Sbjct: 678 DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQF 726
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 3/156 (1%)
Query: 79 SAGSVTGVSLLLYENDNIKGEL-GRFNFSCFPNLK--KMGRLRNLVHLDLSDNYIEGYIL 135
+A + G + +ND +K E G N F ++ ++ RL +++ G+
Sbjct: 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625
Query: 136 PTLGHXXXXXXXXXXXXXXDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVL 195
PT + G IP +G + L L + N I+ SIP E+ +L L +L
Sbjct: 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685
Query: 196 DLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIP 231
DLS N++ G IP + L L +DLS N L GPIP
Sbjct: 686 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 120/262 (45%), Gaps = 29/262 (11%)
Query: 206 IPSTLGHLKRLRSLDLS-LNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFL 264
IPS+L +L L L + +N LVGPIP ++ LT+L + I ++G+IP + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 265 QVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVG 324
LD SYN L G +P +I++L N L + GN + G
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPN------------------------LVGITFDGNRISG 163
Query: 325 PIPSSMGHLARL-TTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVN 383
IP S G ++L T+ + NR+ G IP N N L +DLS N LEG S N
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKN 222
Query: 384 LTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRIN 443
+ L NS F +G L LDL N + G +P + L L + ++ N +
Sbjct: 223 TQKIHLAKNS-LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 444 GSIPLEIGNLKHVEDVYLFNNK 465
G IP + GNL+ + NNK
Sbjct: 282 GEIP-QGGNLQRFDVSAYANNK 302
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 119/245 (48%), Gaps = 28/245 (11%)
Query: 302 IPSTLGHLNRLTSLDLSG-NNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFL 360
IPS+L +L L L + G NNLVGPIP ++ L +L + ++G+IP + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 361 QVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRL-TSLDLSGNNLV 419
LD SYN L G +P +I+SL NL + N +G IP + G ++L TS+ +S N L
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 420 GPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQXXXXXX 479
G IP + +L L D+ N + G + G+ K+ + ++L N L +
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL--------- 237
Query: 480 XXXXXXXXXXXXXXIPSEIGKLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLY 539
++G K L LDL N I G +P L ++ + ++N+ NNL
Sbjct: 238 ----------------GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 540 GSIPE 544
G IP+
Sbjct: 282 GEIPQ 286
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 108/221 (48%), Gaps = 4/221 (1%)
Query: 158 IPSTLGHLTRLTTLAIAS-NQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRL 216
IPS+L +L L L I N + IP I L L L ++ + G+IP L +K L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 217 RSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFL-QVLDLSYNKLE 275
+LD S N L G +P S+ L L NRI+G+IP G+F+ L + +S N+L
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 276 GPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLAR 335
G IP T ANL NL + L N G G + L+ N+L + +G
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKN 245
Query: 336 LTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPS 376
L D+ +NRI G++P + FL L++S+N L G IP
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 25/172 (14%)
Query: 375 PSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTT 434
P+T++S + T CN + G + T R+ +LDLSG NL P P
Sbjct: 21 PTTLSSWLPTTDC--CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP----------- 67
Query: 435 FDMHSNRINGSIPLEIGNLKHVEDVYLFN-NKLDGPIPPQXXXXXXXXXXXXXXXXXXXX 493
IP + NL ++ +Y+ N L GPIPP
Sbjct: 68 -----------IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA 116
Query: 494 IPSEIGKLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLYGSIPES 545
IP + ++K L LD S N ++G +P + +P++ + N + G+IP+S
Sbjct: 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 79/191 (41%), Gaps = 25/191 (13%)
Query: 114 MGRLRNLVHLDLSDNYIEGYILPTLGHXXXXXXXXXXXXXXDGNIPSTLGHLTRLTTLAI 173
+ +L L +L ++ + G I L G +P ++ L L +
Sbjct: 97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156
Query: 174 ASNQINSSIPLEIENLNFL-QVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPS 232
N+I+ +IP + + L + +SRN + G IP T +L L +DLS N L G
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV 215
Query: 233 SLG--------HLTE--LTF-------------FNIYSNRINGSIPLEIGNFNFLQVLDL 269
G HL + L F ++ +NRI G++P + FL L++
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275
Query: 270 SYNKLEGPIPS 280
S+N L G IP
Sbjct: 276 SFNNLCGEIPQ 286
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 105/215 (48%), Gaps = 20/215 (9%)
Query: 236 HLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCN 295
+L LT N +N++ PL+ N +++D+ N + + +ANL NLT L L N
Sbjct: 61 YLNNLTQINFSNNQLTDITPLK----NLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 116
Query: 296 NSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIG 355
N T P L +L L L+LS N + S++ L L + SN++ PL
Sbjct: 117 NQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKPL--A 170
Query: 356 NFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSG 415
N L+ LD+S NK+ S +A L NL SL NN + P LG L L L L+G
Sbjct: 171 NLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 226
Query: 416 NNL--VGPIPSSVGHLTQLTTFDMHSNRINGSIPL 448
N L +G + S LT LT D+ +N+I+ PL
Sbjct: 227 NQLKDIGTLAS----LTNLTDLDLANNQISNLAPL 257
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 143/297 (48%), Gaps = 28/297 (9%)
Query: 162 LGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDL 221
L +LT LT L + +NQI PL +NL L L+LS N I S S L L L+ L+
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPL--KNLTNLNRLELSSNTI--SDISALSGLTSLQQLNF 158
Query: 222 SLNELVGPIPSSLGHLTELTFFNIYSNRING-SIPLEIGNFNFLQVLDLSYNKLEGPIPS 280
S N++ P L +LT L +I SN+++ S+ ++ N L+ L + N++ P
Sbjct: 159 SSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTN---LESLIATNNQISDITPL 213
Query: 281 TIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFD 340
I L NL L L N TL L LT LDL+ N + P + L +LT
Sbjct: 214 GI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK 267
Query: 341 MHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIP- 399
+ +N+I+ PL L L+L+ N+LE P I++L NLT L L N+ + P
Sbjct: 268 LGANQISNISPL--AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV 323
Query: 400 STLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHV 456
S+L L RL NN V + SS+ +LT + N+I+ PL NL +
Sbjct: 324 SSLTKLQRL----FFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTPL--ANLTRI 373
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 12/157 (7%)
Query: 161 TLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLD 220
TL LT LT L +A+NQI++ PL L L L L N+I P L L L +L+
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 221 LSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPS 280
L+ N+L P + +L LT+ +Y N I+ P + + LQ L NK+ S
Sbjct: 290 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VS 343
Query: 281 TIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDL 317
++ANL N+ L +N + P L +L R+T L L
Sbjct: 344 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 378
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 104/215 (48%), Gaps = 20/215 (9%)
Query: 236 HLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCN 295
+L LT N +N++ PL+ N +++D+ N + + +ANL NLT L L N
Sbjct: 61 YLNNLTQINFSNNQLTDITPLK----NLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 116
Query: 296 NSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIG 355
N T P L +L L L+LS N + S++ L L SN++ PL
Sbjct: 117 NQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKPL--A 170
Query: 356 NFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSG 415
N L+ LD+S NK+ S +A L NL SL NN + P LG L L L L+G
Sbjct: 171 NLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 226
Query: 416 NNL--VGPIPSSVGHLTQLTTFDMHSNRINGSIPL 448
N L +G + S LT LT D+ +N+I+ PL
Sbjct: 227 NQLKDIGTLAS----LTNLTDLDLANNQISNLAPL 257
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 142/297 (47%), Gaps = 28/297 (9%)
Query: 162 LGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDL 221
L +LT LT L + +NQI PL +NL L L+LS N I S S L L L+ L
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPL--KNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF 158
Query: 222 SLNELVGPIPSSLGHLTELTFFNIYSNRING-SIPLEIGNFNFLQVLDLSYNKLEGPIPS 280
S N++ P L +LT L +I SN+++ S+ ++ N L+ L + N++ P
Sbjct: 159 SSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTN---LESLIATNNQISDITPL 213
Query: 281 TIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFD 340
I L NL L L N TL L LT LDL+ N + P + L +LT
Sbjct: 214 GI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK 267
Query: 341 MHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIP- 399
+ +N+I+ PL L L+L+ N+LE P I++L NLT L L N+ + P
Sbjct: 268 LGANQISNISPL--AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV 323
Query: 400 STLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHV 456
S+L L RL NN V + SS+ +LT + N+I+ PL NL +
Sbjct: 324 SSLTKLQRL----FFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTPL--ANLTRI 373
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 12/157 (7%)
Query: 161 TLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLD 220
TL LT LT L +A+NQI++ PL L L L L N+I P L L L +L+
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 221 LSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPS 280
L+ N+L P + +L LT+ +Y N I+ P + + LQ L NK+ S
Sbjct: 290 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VS 343
Query: 281 TIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDL 317
++ANL N+ L +N + P L +L R+T L L
Sbjct: 344 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 378
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 104/215 (48%), Gaps = 20/215 (9%)
Query: 236 HLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCN 295
+L LT N +N++ PL+ N +++D+ N + + +ANL NLT L L N
Sbjct: 61 YLNNLTQINFSNNQLTDITPLK----NLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 116
Query: 296 NSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIG 355
N T P L +L L L+LS N + S++ L L SN++ PL
Sbjct: 117 NQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKPL--A 170
Query: 356 NFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSG 415
N L+ LD+S NK+ S +A L NL SL NN + P LG L L L L+G
Sbjct: 171 NLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 226
Query: 416 NNL--VGPIPSSVGHLTQLTTFDMHSNRINGSIPL 448
N L +G + S LT LT D+ +N+I+ PL
Sbjct: 227 NQLKDIGTLAS----LTNLTDLDLANNQISNLAPL 257
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 142/297 (47%), Gaps = 28/297 (9%)
Query: 162 LGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDL 221
L +LT LT L + +NQI PL +NL L L+LS N I S S L L L+ L
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPL--KNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF 158
Query: 222 SLNELVGPIPSSLGHLTELTFFNIYSNRING-SIPLEIGNFNFLQVLDLSYNKLEGPIPS 280
S N++ P L +LT L +I SN+++ S+ ++ N L+ L + N++ P
Sbjct: 159 SSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTN---LESLIATNNQISDITPL 213
Query: 281 TIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFD 340
I L NL L L N TL L LT LDL+ N + P + L +LT
Sbjct: 214 GI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK 267
Query: 341 MHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIP- 399
+ +N+I+ PL L L+L+ N+LE P I++L NLT L L N+ + P
Sbjct: 268 LGANQISNISPL--AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV 323
Query: 400 STLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHV 456
S+L L RL NN V + SS+ +LT + N+I+ PL NL +
Sbjct: 324 SSLTKLQRL----FFSNNKVSDV-SSLANLTNINWLSAGHNQISDLTPL--ANLTRI 373
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 79/157 (50%), Gaps = 12/157 (7%)
Query: 161 TLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLD 220
TL LT LT L +A+NQI++ PL L L L L N+I P L L L +L+
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 221 LSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPS 280
L+ N+L P + +L LT+ +Y N I+ P + + LQ L S NK+ S
Sbjct: 290 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSD--VS 343
Query: 281 TIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDL 317
++ANL N+ L +N + P L +L R+T L L
Sbjct: 344 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 378
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 106/217 (48%), Gaps = 25/217 (11%)
Query: 236 HLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCN 295
+L LT N +N++ PL+ N +++D+ N + + +ANL NLT L L N
Sbjct: 65 YLNNLTQINFSNNQLTDITPLK----NLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 120
Query: 296 NSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHS--NRINGSIPLE 353
N T P L +L L L+LS N + S + L+ LT+ S N++ PL
Sbjct: 121 NQITDIDP--LKNLTNLNRLELSSNTI-----SDISALSGLTSLQQLSFGNQVTDLKPL- 172
Query: 354 IGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDL 413
N L+ LD+S NK+ S +A L NL SL NN + P LG L L L L
Sbjct: 173 -ANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 227
Query: 414 SGNNL--VGPIPSSVGHLTQLTTFDMHSNRINGSIPL 448
+GN L +G + S LT LT D+ +N+I+ PL
Sbjct: 228 NGNQLKDIGTLAS----LTNLTDLDLANNQISNLAPL 260
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 140/320 (43%), Gaps = 48/320 (15%)
Query: 162 LGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEI-----------------GG 204
L +LT LT L + +NQI PL +NL L L+LS N I G
Sbjct: 107 LANLTNLTGLTLFNNQITDIDPL--KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN 164
Query: 205 SIPST--LGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFN 262
+ L +L L LD+S N+ V I S L LT L +N+I+ PL I
Sbjct: 165 QVTDLKPLANLTTLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITPLGI--LT 220
Query: 263 FLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNL 322
L L L+ N+L+ T+A+L NLT L L NN + P L L +LT L L N +
Sbjct: 221 NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 276
Query: 323 VGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLV 382
P + L LT +++ N++ P I N L L L +N + P ++SL
Sbjct: 277 SNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLT 330
Query: 383 NLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSN-- 440
L LF NN + S+L +L + L N + P + +LT++T ++
Sbjct: 331 KLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 386
Query: 441 -------RINGSIPLEIGNL 453
+ N SIP + N+
Sbjct: 387 TNAPVNYKANVSIPNTVKNV 406
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 79/157 (50%), Gaps = 12/157 (7%)
Query: 161 TLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLD 220
TL LT LT L +A+NQI++ PL L L L L N+I P L L L +L+
Sbjct: 237 TLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP--LAGLTALTNLE 292
Query: 221 LSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPS 280
L+ N+L P + +L LT+ +Y N I+ P + + LQ L + NK+ S
Sbjct: 293 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VS 346
Query: 281 TIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDL 317
++ANL N+ L +N + P L +L R+T L L
Sbjct: 347 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 381
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 106/217 (48%), Gaps = 25/217 (11%)
Query: 236 HLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCN 295
+L LT N +N++ PL+ N +++D+ N + + +ANL NLT L L N
Sbjct: 66 YLNNLTQINFSNNQLTDITPLK----NLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 121
Query: 296 NSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHS--NRINGSIPLE 353
N T P L +L L L+LS N + S + L+ LT+ S N++ PL
Sbjct: 122 NQITDIDP--LKNLTNLNRLELSSNTI-----SDISALSGLTSLQQLSFGNQVTDLKPL- 173
Query: 354 IGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDL 413
N L+ LD+S NK+ S +A L NL SL NN + P LG L L L L
Sbjct: 174 -ANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 228
Query: 414 SGNNL--VGPIPSSVGHLTQLTTFDMHSNRINGSIPL 448
+GN L +G + S LT LT D+ +N+I+ PL
Sbjct: 229 NGNQLKDIGTLAS----LTNLTDLDLANNQISNLAPL 261
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 140/320 (43%), Gaps = 48/320 (15%)
Query: 162 LGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEI-----------------GG 204
L +LT LT L + +NQI PL +NL L L+LS N I G
Sbjct: 108 LANLTNLTGLTLFNNQITDIDPL--KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN 165
Query: 205 SIPST--LGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFN 262
+ L +L L LD+S N+ V I S L LT L +N+I+ PL G
Sbjct: 166 QVTDLKPLANLTTLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITPL--GILT 221
Query: 263 FLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNL 322
L L L+ N+L+ T+A+L NLT L L NN + P L L +LT L L N +
Sbjct: 222 NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 277
Query: 323 VGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLV 382
P + L LT +++ N++ P I N L L L +N + P ++SL
Sbjct: 278 SNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLT 331
Query: 383 NLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSN-- 440
L LF NN + S+L +L + L N + P + +LT++T ++
Sbjct: 332 KLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 387
Query: 441 -------RINGSIPLEIGNL 453
+ N SIP + N+
Sbjct: 388 TNAPVNYKANVSIPNTVKNV 407
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 12/157 (7%)
Query: 161 TLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLD 220
TL LT LT L +A+NQI++ PL L L L L N+I P L L L +L+
Sbjct: 238 TLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP--LAGLTALTNLE 293
Query: 221 LSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPS 280
L+ N+L P + +L LT+ +Y N I+ P + + LQ L NK+ S
Sbjct: 294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VS 347
Query: 281 TIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDL 317
++ANL N+ L +N + P L +L R+T L L
Sbjct: 348 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 382
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 105/217 (48%), Gaps = 25/217 (11%)
Query: 236 HLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCN 295
+L LT N +N++ PL+ N +++D+ N + + +ANL NLT L L N
Sbjct: 61 YLNNLTQINFSNNQLTDITPLK----NLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 116
Query: 296 NSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDM--HSNRINGSIPLE 353
N T P L +L L L+LS N + S + L+ LT+ N++ PL
Sbjct: 117 NQITDIDP--LKNLTNLNRLELSSNTI-----SDISALSGLTSLQQLNFGNQVTDLKPL- 168
Query: 354 IGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDL 413
N L+ LD+S NK+ S +A L NL SL NN + P LG L L L L
Sbjct: 169 -ANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 223
Query: 414 SGNNL--VGPIPSSVGHLTQLTTFDMHSNRINGSIPL 448
+GN L +G + S LT LT D+ +N+I+ PL
Sbjct: 224 NGNQLKDIGTLAS----LTNLTDLDLANNQISNLAPL 256
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 140/320 (43%), Gaps = 48/320 (15%)
Query: 162 LGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEI-----------------GG 204
L +LT LT L + +NQI PL +NL L L+LS N I G
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPL--KNLTNLNRLELSSNTISDISALSGLTSLQQLNFGN 160
Query: 205 SIPST--LGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFN 262
+ L +L L LD+S N+ V I S L LT L +N+I+ PL G
Sbjct: 161 QVTDLKPLANLTTLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITPL--GILT 216
Query: 263 FLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNL 322
L L L+ N+L+ T+A+L NLT L L NN + P L L +LT L L N +
Sbjct: 217 NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 272
Query: 323 VGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLV 382
P + L LT +++ N++ P I N L L L +N + P ++SL
Sbjct: 273 SNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLT 326
Query: 383 NLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSN-- 440
L LF NN + S+L +L + L N + P + +LT++T ++
Sbjct: 327 KLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 382
Query: 441 -------RINGSIPLEIGNL 453
+ N SIP + N+
Sbjct: 383 TNAPVNYKANVSIPNTVKNV 402
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 12/157 (7%)
Query: 161 TLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLD 220
TL LT LT L +A+NQI++ PL L L L L N+I P L L L +L+
Sbjct: 233 TLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP--LAGLTALTNLE 288
Query: 221 LSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPS 280
L+ N+L P + +L LT+ +Y N I+ P + + LQ L NK+ S
Sbjct: 289 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VS 342
Query: 281 TIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDL 317
++ANL N+ L +N + P L +L R+T L L
Sbjct: 343 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 377
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 105/217 (48%), Gaps = 25/217 (11%)
Query: 236 HLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCN 295
+L LT N +N++ PL+ N +++D+ N + + +ANL NLT L L N
Sbjct: 61 YLNNLTQINFSNNQLTDITPLK----NLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 116
Query: 296 NSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDM--HSNRINGSIPLE 353
N T P L +L L L+LS N + S + L+ LT+ N++ PL
Sbjct: 117 NQITDIDP--LKNLTNLNRLELSSNTI-----SDISALSGLTSLQQLNFGNQVTDLKPL- 168
Query: 354 IGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDL 413
N L+ LD+S NK+ S +A L NL SL NN + P LG L L L L
Sbjct: 169 -ANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 223
Query: 414 SGNNL--VGPIPSSVGHLTQLTTFDMHSNRINGSIPL 448
+GN L +G + S LT LT D+ +N+I+ PL
Sbjct: 224 NGNQLKDIGTLAS----LTNLTDLDLANNQISNLAPL 256
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 140/320 (43%), Gaps = 48/320 (15%)
Query: 162 LGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEI-----------------GG 204
L +LT LT L + +NQI PL +NL L L+LS N I G
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPL--KNLTNLNRLELSSNTISDISALSGLTSLQQLNFGN 160
Query: 205 SIPST--LGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFN 262
+ L +L L LD+S N+ V I S L LT L +N+I+ PL G
Sbjct: 161 QVTDLKPLANLTTLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITPL--GILT 216
Query: 263 FLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNL 322
L L L+ N+L+ T+A+L NLT L L NN + P L L +LT L L N +
Sbjct: 217 NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 272
Query: 323 VGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLV 382
P + L LT +++ N++ P I N L L L +N + P ++SL
Sbjct: 273 SNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLT 326
Query: 383 NLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSN-- 440
L LF NN + S+L +L + L N + P + +LT++T ++
Sbjct: 327 KLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 382
Query: 441 -------RINGSIPLEIGNL 453
+ N SIP + N+
Sbjct: 383 TNAPVNYKANVSIPNTVKNV 402
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 79/157 (50%), Gaps = 12/157 (7%)
Query: 161 TLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLD 220
TL LT LT L +A+NQI++ PL L L L L N+I P L L L +L+
Sbjct: 233 TLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP--LAGLTALTNLE 288
Query: 221 LSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPS 280
L+ N+L P + +L LT+ +Y N I+ P + + LQ L S NK+ S
Sbjct: 289 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSD--VS 342
Query: 281 TIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDL 317
++ANL N+ L +N + P L +L R+T L L
Sbjct: 343 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 377
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 127/275 (46%), Gaps = 35/275 (12%)
Query: 160 STLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSL 219
S L +L +LT L I +N+I L+ NL L+ L L+ + I P L +L + SL
Sbjct: 82 SPLSNLVKLTNLYIGTNKITDISALQ--NLTNLRELYLNEDNISDISP--LANLTKXYSL 137
Query: 220 DLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIP 279
+L N + + S L + T L + + +++ P I N L L L+YN++E P
Sbjct: 138 NLGANHNLSDL-SPLSNXTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP 194
Query: 280 --------------------STIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSG 319
+ +AN L SL + NN T P L +L++LT L++ G
Sbjct: 195 LASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEI-G 251
Query: 320 NNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIA 379
N + I +++ L +L ++ SN+I+ L N + L L L+ N+L I
Sbjct: 252 TNQISDI-NAVKDLTKLKXLNVGSNQISDISVL--NNLSQLNSLFLNNNQLGNEDXEVIG 308
Query: 380 SLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLS 414
L NLT+LFL N T P L L++ S D +
Sbjct: 309 GLTNLTTLFLSQNHITDIRP--LASLSKXDSADFA 341
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 111/259 (42%), Gaps = 15/259 (5%)
Query: 212 HLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSY 271
HL+ ++ DL L ++ +P + ++ +N+I + N L L L
Sbjct: 32 HLRVVQCSDLGLEKVPKDLPP------DTALLDLQNNKITEIKDGDFKNLKNLHTLILIN 85
Query: 272 NKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMG 331
NK+ P A LV L L+L N Q +P + L L + N + S
Sbjct: 86 NKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELRVHENEITKVRKSVFN 142
Query: 332 HLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLV--NLTSLFL 389
L ++ ++ +N + S I N F + LSY ++ +TI + +LT L L
Sbjct: 143 GLNQMIVVELGTNPLKSS---GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHL 199
Query: 390 CNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLE 449
N T ++L LN L L LS N++ S+ + L +++N++ +P
Sbjct: 200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGG 258
Query: 450 IGNLKHVEDVYLFNNKLDG 468
+ + K+++ VYL NN +
Sbjct: 259 LADHKYIQVVYLHNNNISA 277
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 9/210 (4%)
Query: 165 LTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLN 224
L L TL + +N+I+ P L L+ L LS+N++ +P + K L+ L + N
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEKMP--KTLQELRVHEN 131
Query: 225 ELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIAN 284
E+ S L ++ + +N + S I N F + LSY ++ +TI
Sbjct: 132 EITKVRKSVFNGLNQMIVVELGTNPLKSS---GIENGAFQGMKKLSYIRIADTNITTIPQ 188
Query: 285 LV--NLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMH 342
+ +LT L L N T ++L LN L L LS N++ S+ + L ++
Sbjct: 189 GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248
Query: 343 SNRINGSIPLEIGNFNFLQVLDLSYNKLEG 372
+N++ +P + + ++QV+ L N +
Sbjct: 249 NNKL-VKVPGGLADHKYIQVVYLHNNNISA 277
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 111/259 (42%), Gaps = 15/259 (5%)
Query: 212 HLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSY 271
HL+ ++ DL L ++ +P + ++ +N+I + N L L L
Sbjct: 32 HLRVVQCSDLGLEKVPKDLPP------DTALLDLQNNKITEIKDGDFKNLKNLHTLILIN 85
Query: 272 NKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMG 331
NK+ P A LV L L+L N Q +P + L L + N + S
Sbjct: 86 NKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELRVHENEITKVRKSVFN 142
Query: 332 HLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLV--NLTSLFL 389
L ++ ++ +N + S I N F + LSY ++ +TI + +LT L L
Sbjct: 143 GLNQMIVVELGTNPLKSS---GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHL 199
Query: 390 CNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLE 449
N T ++L LN L L LS N++ S+ + L +++N++ +P
Sbjct: 200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGG 258
Query: 450 IGNLKHVEDVYLFNNKLDG 468
+ + K+++ VYL NN +
Sbjct: 259 LADHKYIQVVYLHNNNISA 277
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 9/210 (4%)
Query: 165 LTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLN 224
L L TL + +N+I+ P L L+ L LS+N++ +P + K L+ L + N
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEKMP--KTLQELRVHEN 131
Query: 225 ELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIAN 284
E+ S L ++ + +N + S I N F + LSY ++ +TI
Sbjct: 132 EITKVRKSVFNGLNQMIVVELGTNPLKSS---GIENGAFQGMKKLSYIRIADTNITTIPQ 188
Query: 285 LV--NLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMH 342
+ +LT L L N T ++L LN L L LS N++ S+ + L ++
Sbjct: 189 GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248
Query: 343 SNRINGSIPLEIGNFNFLQVLDLSYNKLEG 372
+N++ +P + + ++QV+ L N +
Sbjct: 249 NNKL-VKVPGGLADHKYIQVVYLHNNNISA 277
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 95/226 (42%), Gaps = 4/226 (1%)
Query: 193 QVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRING 252
++LDL +N I L L+L+ N + P + +L L + SNR+
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK- 93
Query: 253 SIPLEI-GNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNR 311
IPL + + L LD+S NK+ + +L NL SL + +N LN
Sbjct: 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153
Query: 312 LTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLS-YNKL 370
L L L NL ++ HL L + IN L+VL++S + L
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213
Query: 371 EGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGN 416
+ P+ + L NLTSL + + + T + HL L L+LS N
Sbjct: 214 DTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 101/230 (43%), Gaps = 4/230 (1%)
Query: 165 LTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLN 224
L+ LT L I+ N+I + ++L L+ L++ N++ L L L L
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162
Query: 225 ELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLS-YNKLEGPIPSTIA 283
L +L HL L + IN L+VL++S + L+ P+ +
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222
Query: 284 NLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGH-LARLTTFDMH 342
L NLTSL + + + T + HL L L+LS N + I SM H L RL +
Sbjct: 223 GL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLV 280
Query: 343 SNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNN 392
++ P N+L+VL++S N+L S S+ NL +L L +N
Sbjct: 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 102/277 (36%), Gaps = 18/277 (6%)
Query: 199 RNEIGGSIPSTLGHLKRL-----------RSLDLSLNELVGPIPSSLGHLTELTFFNIYS 247
R E + L H KR R LDL N + L +
Sbjct: 6 RCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNE 65
Query: 248 NRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLG 307
N ++ P N L+ L L N+L+ L NLT L + N +
Sbjct: 66 NIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ 125
Query: 308 HLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLE-IGNFNFLQVLDLS 366
L L SL++ N+LV + L L + + SIP E + + + L VL L
Sbjct: 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLR 184
Query: 367 YNKLEGPIPSTIASLVNLTSLFLCNNSQTG-FIPSTLGHLNRLTSLDLSGNNLVGPIPSS 425
+ + + L L L + + P+ L LN LTSL ++ NL +
Sbjct: 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHCNLTAVPYLA 243
Query: 426 VGHLTQLTTFDMHSN---RINGSIPLEIGNLKHVEDV 459
V HL L ++ N I GS+ E+ L+ ++ V
Sbjct: 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV 280
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 90/222 (40%), Gaps = 20/222 (9%)
Query: 192 LQVLDLSRNEI---GGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSN 248
L+ LDLSRN + G S G + L+ LDLS N ++ + LG L +L + +
Sbjct: 373 LEFLDLSRNGLSFKGCCSQSDFGTIS-LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHS 430
Query: 249 RING----SIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNS-QTGFIP 303
+ S+ L + N L LD+S+ L +L L + NS Q F+P
Sbjct: 431 NLKQMSEFSVFLSLRN---LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 487
Query: 304 STLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVL 363
L LT LDLS L P++ L+ L +M N N LQVL
Sbjct: 488 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 547
Query: 364 DLSYNKLEGP-------IPSTIASLVNLTSLFLCNNSQTGFI 398
D S N + PS++A L + F C F+
Sbjct: 548 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFL 589
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 58/147 (39%), Gaps = 8/147 (5%)
Query: 110 NLKKMGR------LRNLVHLDLSDNYIEGYILPTL-GHXXXXXXXXXXXXXXDGNIPSTL 162
NLK+M LRNL++LD+S + G + +P
Sbjct: 431 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 490
Query: 163 GHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLS 222
L LT L ++ Q+ P +L+ LQVL++S N L L+ LD S
Sbjct: 491 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 550
Query: 223 LNELVGPIPSSLGHL-TELTFFNIYSN 248
LN ++ L H + L F N+ N
Sbjct: 551 LNHIMTSKKQELQHFPSSLAFLNLTQN 577
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 82/202 (40%), Gaps = 39/202 (19%)
Query: 179 NSSIPLEIE-------NLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIP 231
NSSIP E N+ + Q ++L+ +I ++P + ++LDLS N
Sbjct: 17 NSSIPESWEPCVEVVPNITY-QCMELNFYKIPDNLPFST------KNLDLSFN------- 62
Query: 232 SSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSL 291
L HL +FF+ F LQVLDLS +++ +L +L++L
Sbjct: 63 -PLRHLGSYSFFS----------------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 105
Query: 292 FLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRING-SI 350
L N L+ L L NL +GHL L ++ N I +
Sbjct: 106 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 165
Query: 351 PLEIGNFNFLQVLDLSYNKLEG 372
P N L+ LDLS NK++
Sbjct: 166 PEYFSNLTNLEHLDLSSNKIQS 187
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 9/134 (6%)
Query: 312 LTSLDLSGNNLVGPIPSSMGHLARLTTFDM-HSN---RINGSIPLEIGNFNFLQVLDLSY 367
L LDLS N ++ + +G L +L D HSN S+ L + N L LD+S+
Sbjct: 399 LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRN---LIYLDISH 454
Query: 368 NKLEGPIPSTIASLVNLTSLFLCNNS-QTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSV 426
L +L L + NS Q F+P L LT LDLS L P++
Sbjct: 455 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 514
Query: 427 GHLTQLTTFDMHSN 440
L+ L +M N
Sbjct: 515 NSLSSLQVLNMSHN 528
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 6/121 (4%)
Query: 354 IGNFNF-----LQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRL 408
+G+++F LQVLDLS +++ SL +L++L L N L+ L
Sbjct: 67 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 126
Query: 409 TSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRING-SIPLEIGNLKHVEDVYLFNNKLD 467
L NL +GHL L ++ N I +P NL ++E + L +NK+
Sbjct: 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186
Query: 468 G 468
Sbjct: 187 S 187
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 157 NIPSTLGHLTRLTTLAIASNQINS-SIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKR 215
N P +GHL L L +A N I S +P NL L+ LDLS N+I + L L +
Sbjct: 141 NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 198
Query: 216 L 216
+
Sbjct: 199 M 199
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 494 IPSEIGKLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLYGSIPESLRKVPSLC 553
+P +L+ L +LDLSQ + P+ + S+ +N+ NN + SL P C
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-----SLDTFPYKC 540
Query: 554 VDG 556
++
Sbjct: 541 LNS 543
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 3/124 (2%)
Query: 192 LQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRIN 251
++ DLS+++I + S H L L L+ NE+ ++ LT L N+ N +
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336
Query: 252 GSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNR 311
N + L+VLDLSYN + + L NL L L N Q +P G +R
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPD--GIFDR 393
Query: 312 LTSL 315
LTSL
Sbjct: 394 LTSL 397
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 59/148 (39%), Gaps = 27/148 (18%)
Query: 264 LQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLV 323
++ DLS +K+ + S ++ +L L L N + L L L+LS N +
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS-QNFL 335
Query: 324 GPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVN 383
G I S M N + L+VLDLSYN + + L N
Sbjct: 336 GSIDSRM-----------------------FENLDKLEVLDLSYNHIRALGDQSFLGLPN 372
Query: 384 LTSLFLCNNSQTGFIPSTLGHLNRLTSL 411
L L L N Q +P G +RLTSL
Sbjct: 373 LKELALDTN-QLKSVPD--GIFDRLTSL 397
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%)
Query: 158 IPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLR 217
+ S H T L L +A N+IN L L L+LS+N +G +L +L
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350
Query: 218 SLDLSLNEL 226
LDLS N +
Sbjct: 351 VLDLSYNHI 359
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%)
Query: 165 LTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLN 224
LT L L ++ N + S ENL+ L+VLDLS N I + L L+ L L N
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
Query: 225 ELVGPIPSSLGHLTELTFFNIYSNRINGSIP 255
+L LT L +++N + S P
Sbjct: 382 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 64/133 (48%), Gaps = 10/133 (7%)
Query: 337 TTFDMHSNRINGSIPLEI-GNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQT 395
TT D S R + S+P I N L + D KLE P SL+NL L+L +N Q
Sbjct: 22 TTVDCRSKR-HASVPAGIPTNAQILYLHDNQITKLE---PGVFDSLINLKELYLGSN-QL 76
Query: 396 GFIP-STLGHLNRLTSLDLSGNNLVGPIPSSV-GHLTQLTTFDMHSNRINGSIPLEIGNL 453
G +P L +LT LDL G N + +PS+V L L M N++ +P I L
Sbjct: 77 GALPVGVFDSLTQLTVLDL-GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERL 134
Query: 454 KHVEDVYLFNNKL 466
H+ + L N+L
Sbjct: 135 THLTHLALDQNQL 147
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 69/155 (44%), Gaps = 10/155 (6%)
Query: 241 TFFNIYSNRINGSIPLEI-GNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQT 299
T + S R + S+P I N L + D KLE P +L+NL L+L +N Q
Sbjct: 22 TTVDCRSKR-HASVPAGIPTNAQILYLHDNQITKLE---PGVFDSLINLKELYLGSN-QL 76
Query: 300 GFIP-STLGHLNRLTSLDLSGNNLVGPIPSSM-GHLARLTTFDMHSNRINGSIPLEIGNF 357
G +P L +LT LDL G N + +PS++ L L M N++ +P I
Sbjct: 77 GALPVGVFDSLTQLTVLDL-GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERL 134
Query: 358 NFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNN 392
L L L N+L+ L +LT +L N
Sbjct: 135 THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 5/140 (3%)
Query: 199 RNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEI 258
R++ S+P+ G + L L N++ P L L + SN++ G++P+ +
Sbjct: 27 RSKRHASVPA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGV 83
Query: 259 -GNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDL 317
+ L VLDL N+L + LV+L LF+C N T +P + L LT L L
Sbjct: 84 FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLAL 142
Query: 318 SGNNLVGPIPSSMGHLARLT 337
N L + L+ LT
Sbjct: 143 DQNQLKSIPHGAFDRLSSLT 162
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 159 PSTLGHLTRLTTLAIASNQINSSIPLEI-ENLNFLQVLDLSRNEIGGSIPSTLGHLKRLR 217
P L L L + SNQ+ + +P+ + ++L L VLDL N++ + L L+
Sbjct: 57 PGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK 115
Query: 218 SLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSY 271
L + N+L +P + LT LT + N++ SIP G F+ L L +Y
Sbjct: 116 ELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPH--GAFDRLSSLTHAY 165
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 1/126 (0%)
Query: 171 LAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPI 230
L + NQI P ++L L+ L L N++G L +L LDL N+L
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104
Query: 231 PSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTS 290
+ L L + N++ +P I L L L N+L+ L +LT
Sbjct: 105 SAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163
Query: 291 LFLCNN 296
+L N
Sbjct: 164 AYLFGN 169
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 91/223 (40%), Gaps = 22/223 (9%)
Query: 192 LQVLDLSRNEI---GGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSN 248
L+ LDLSRN + G S G L+ LDLS N ++ + LG L +L + +
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHS 406
Query: 249 RING----SIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNS-QTGFIP 303
+ S+ L + N L LD+S+ L +L L + NS Q F+P
Sbjct: 407 NLKQMSEFSVFLSLRN---LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
Query: 304 STLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVL 363
L LT LDLS L P++ L+ L +M N N LQVL
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 523
Query: 364 DLSYNKLEGP-------IPSTIASLVNLTS-LFLCNNSQTGFI 398
D S N + PS++A +NLT F C F+
Sbjct: 524 DYSLNHIMTSKKQELQHFPSSLA-FLNLTQNDFACTCEHQSFL 565
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 58/147 (39%), Gaps = 8/147 (5%)
Query: 110 NLKKMGR------LRNLVHLDLSDNYIEGYILPTL-GHXXXXXXXXXXXXXXDGNIPSTL 162
NLK+M LRNL++LD+S + G + +P
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466
Query: 163 GHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLS 222
L LT L ++ Q+ P +L+ LQVL++S N L L+ LD S
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 526
Query: 223 LNELVGPIPSSLGHL-TELTFFNIYSN 248
LN ++ L H + L F N+ N
Sbjct: 527 LNHIMTSKKQELQHFPSSLAFLNLTQN 553
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 14/160 (8%)
Query: 227 VGPIPSSLGHLTELTFFNIYSNRINGSIPLEI--------GNFNF-----LQVLDLSYNK 273
V +P+ EL F+ I N + L++ G+++F LQVLDLS +
Sbjct: 4 VEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE 63
Query: 274 LEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHL 333
++ +L +L++L L N L+ L L NL +GHL
Sbjct: 64 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 334 ARLTTFDMHSNRING-SIPLEIGNFNFLQVLDLSYNKLEG 372
L ++ N I +P N L+ LDLS NK++
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 9/134 (6%)
Query: 312 LTSLDLSGNNLVGPIPSSMGHLARLTTFDM-HSN---RINGSIPLEIGNFNFLQVLDLSY 367
L LDLS N ++ + +G L +L D HSN S+ L + N L LD+S+
Sbjct: 375 LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRN---LIYLDISH 430
Query: 368 NKLEGPIPSTIASLVNLTSLFLCNNS-QTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSV 426
L +L L + NS Q F+P L LT LDLS L P++
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490
Query: 427 GHLTQLTTFDMHSN 440
L+ L +M N
Sbjct: 491 NSLSSLQVLNMSHN 504
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 6/121 (4%)
Query: 354 IGNFNF-----LQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRL 408
+G+++F LQVLDLS +++ SL +L++L L N L+ L
Sbjct: 43 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102
Query: 409 TSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRING-SIPLEIGNLKHVEDVYLFNNKLD 467
L NL +GHL L ++ N I +P NL ++E + L +NK+
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Query: 468 G 468
Sbjct: 163 S 163
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 157 NIPSTLGHLTRLTTLAIASNQINS-SIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKR 215
N P +GHL L L +A N I S +P NL L+ LDLS N+I + L L +
Sbjct: 117 NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174
Query: 216 L 216
+
Sbjct: 175 M 175
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 494 IPSEIGKLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLYGSIPESLRKVPSLC 553
+P +L+ L +LDLSQ + P+ + S+ +N+ NN + SL P C
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-----SLDTFPYKC 516
Query: 554 VDG 556
++
Sbjct: 517 LNS 519
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 387 LFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSV-GHLTQLTTFDMHSNRINGS 445
L+L NN T P HL L L + N L IP+ V LTQLT D++ N + S
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLK-S 95
Query: 446 IPL-EIGNLKHVEDVYLFNNKLD 467
IP NLK + +YL+NN D
Sbjct: 96 IPRGAFDNLKSLTHIYLYNNPWD 118
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 265 QVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVG 324
Q L L+ N++ P +LVNL L+ +N T L +LT LDL+ N+L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 325 PIPSSMGHLARLTTFDMHSN 344
+ +L LT +++N
Sbjct: 96 IPRGAFDNLKSLTHIYLYNN 115
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 7/152 (4%)
Query: 163 GHLTRLTTLAIASNQIN--SSIPLEIENLNFLQVLDLSRNEIG-GSIPSTLGHLKRLRSL 219
GHLT L TL + NQ+ S I + LQ LD+S+N + K L SL
Sbjct: 345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404
Query: 220 DLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIP 279
++S N L I L + +++SN+I SIP ++ LQ L+++ N+L+
Sbjct: 405 NMSSNILTDTIFRCLP--PRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKSVPD 461
Query: 280 STIANLVNLTSLFLCNNSQTGFIPSTLGHLNR 311
L +L ++L N P + +L+R
Sbjct: 462 GIFDRLTSLQKIWLHTNPWDCSCPR-IDYLSR 492
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 77/191 (40%), Gaps = 29/191 (15%)
Query: 219 LDLSLNELVGPIPSSLGHLTELTFFNIYSNRIN--GSIPLEIGNFNFLQVLDLSYNKLEG 276
LD S N L + + GHLTEL + N++ I LQ LD+S N +
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 277 PIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARL 336
+ + G T L SL++S N L I + R+
Sbjct: 389 -------------------DEKKGDCSWT----KSLLSLNMSSNILTDTIFRCLP--PRI 423
Query: 337 TTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTG 396
D+HSN+I SIP ++ LQ L+++ N+L+ L +L ++L N
Sbjct: 424 KVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482
Query: 397 FIPSTLGHLNR 407
P + +L+R
Sbjct: 483 SCPR-IDYLSR 492
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 70/165 (42%), Gaps = 16/165 (9%)
Query: 315 LDLSGNNLVGPIPSSMGHLARLTTFDMHSNRIN--GSIPLEIGNFNFLQVLDLS-----Y 367
LD S N L + + GHL L T + N++ I LQ LD+S Y
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 368 NKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVG 427
++ +G T + L SL + +N T I L R+ LDL N + IP V
Sbjct: 389 DEKKGDCSWTKS----LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVV 441
Query: 428 HLTQLTTFDMHSNRINGSIPLEI-GNLKHVEDVYLFNNKLDGPIP 471
L L ++ SN++ S+P I L ++ ++L N D P
Sbjct: 442 KLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 27/146 (18%)
Query: 157 NIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRL 216
++P L T T L I+ N I+ +I +L+ L++L +S N I S + L
Sbjct: 14 HVPKDLSQKT--TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQEL 71
Query: 217 RSLDLSLNELVG----------------------PIPSSLGHLTELTFFNIYSNRINGSI 254
LDLS N+LV PI G++++L F + + + S
Sbjct: 72 EYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS 131
Query: 255 PLEIGNFNF---LQVLDLSYNKLEGP 277
L I + N L VL +Y + E P
Sbjct: 132 VLPIAHLNISKVLLVLGETYGEKEDP 157
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 75/178 (42%), Gaps = 12/178 (6%)
Query: 294 CNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGH-LARLTTFDMHSNRIN---GS 349
C++ + IPS + + LDL N L +PS H L +L ++ N++
Sbjct: 23 CSSKKLTAIPSNIPADTK--KLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79
Query: 350 IPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLT 409
I E+ N L V D NKL+ LVNL L L N P L +LT
Sbjct: 80 IFKELKNLETLWVTD---NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136
Query: 410 SLDLSGNNLVGPIPSSV-GHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKL 466
L L G N + +P V LT L +++N++ L ++ + L NN+L
Sbjct: 137 YLSL-GYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 58/176 (32%)
Query: 265 QVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVG 324
+ LDL NKL L L L+L +N L L +L ++ N L
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 325 PIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNL 384
L L + N++ P + L L L YN+L+ L +L
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 385 TSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSN 440
L L NN L L +L L N L + L +L + N
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 5/158 (3%)
Query: 310 NRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNK 369
N S+D S L IPS++ A D+ SN+++ L++L L+ NK
Sbjct: 16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72
Query: 370 LEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHL 429
L+ L NL +L++ +N L L L L N L P L
Sbjct: 73 LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL 132
Query: 430 TQLTTFDMHSNRINGSIPLEI-GNLKHVEDVYLFNNKL 466
T+LT + N + S+P + L ++++ L+NN+L
Sbjct: 133 TKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQL 169
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 70/187 (37%), Gaps = 2/187 (1%)
Query: 158 IPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLR 217
IPS + T+ L + SN+++S L L++L L+ N++ LK L
Sbjct: 31 IPSNIPADTK--KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88
Query: 218 SLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGP 277
+L ++ N+L L L + N++ P + L L L YN+L+
Sbjct: 89 TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148
Query: 278 IPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLT 337
L +L L L NN L L +L L N L + L +L
Sbjct: 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208
Query: 338 TFDMHSN 344
+ N
Sbjct: 209 MLQLQEN 215
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 78/200 (39%), Gaps = 5/200 (2%)
Query: 218 SLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGP 277
S+D S +L IPS++ T+ ++ SN+++ L++L L+ NKL+
Sbjct: 20 SVDCSSKKLTA-IPSNIPADTK--KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL 76
Query: 278 IPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLT 337
L NL +L++ +N L L L L N L P L +LT
Sbjct: 77 PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136
Query: 338 TFDMHSNRINGSIPLEI-GNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTG 396
+ N + S+P + L+ L L N+L+ L L +L L NN
Sbjct: 137 YLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195
Query: 397 FIPSTLGHLNRLTSLDLSGN 416
L +L L L N
Sbjct: 196 VPEGAFDSLEKLKMLQLQEN 215
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 374 IPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLT 433
+P+ I + + L++ N T P L +LT L+L+ N L LT+LT
Sbjct: 34 VPAGIPTTTQVLHLYI--NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLT 91
Query: 434 TFDMHSNRINGSIPLEI-GNLKHVEDVYLFNNKLD 467
+H N++ SIP+ + NLK + +YLFNN D
Sbjct: 92 HLALHINQLK-SIPMGVFDNLKSLTHIYLFNNPWD 125
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 193 QVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRING 252
QVL L N+I P L +L L+L++N+L LT+LT ++ N++
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLK- 101
Query: 253 SIPLEIGNFNFLQVLDLSY 271
SIP+ G F+ L+ L Y
Sbjct: 102 SIPM--GVFDNLKSLTHIY 118
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 217 RSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLD---LSYNK 273
+ L L +N++ P LT+LT+ N+ N++ L +G F+ L L L N+
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTA---LPVGVFDKLTKLTHLALHINQ 99
Query: 274 LEGPIPSTIANLVNLTSLFLCNN 296
L+ NL +LT ++L NN
Sbjct: 100 LKSIPMGVFDNLKSLTHIYLFNN 122
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 278 IPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLT 337
+P+ I + L++ N T P L +LT L+L+ N L L +LT
Sbjct: 34 VPAGIPTTTQVLHLYI--NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLT 91
Query: 338 TFDMHSNRINGSIPLEIGNFNFLQVLDLSY 367
+H N++ SIP+ G F+ L+ L Y
Sbjct: 92 HLALHINQLK-SIPM--GVFDNLKSLTHIY 118
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 12/111 (10%)
Query: 157 NIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRL 216
NI + + LT L + N + + +P EI+NL+ L+VLDLS N + S+P+ LG +L
Sbjct: 238 NISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQL 295
Query: 217 RSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVL 267
+ + +V +P G+L L F + N PLE FL++L
Sbjct: 296 KYFYF-FDNMVTTLPWEFGNLCNLQFLGVEGN------PLEK---QFLKIL 336
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 349 SIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRL 408
+P EI N + L+VLDLS+N+L +P+ + S L + +N T +P G+L L
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNL 318
Query: 409 TSLDLSGNNL 418
L + GN L
Sbjct: 319 QFLGVEGNPL 328
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 16/100 (16%)
Query: 237 LTELTFFNIYSN----------RING----SIPLEIGNFNFLQVLDLSYNKLEGPIPSTI 282
L+ L FNI +N +NG +P EI N + L+VLDLS+N+L +P+ +
Sbjct: 231 LSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAEL 289
Query: 283 ANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNL 322
+ L + +N T +P G+L L L + GN L
Sbjct: 290 GSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPL 328
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 374 IPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSV-GHLTQL 432
+P+ I + + L+L +N T P L +LT LDL N L +P+ V LTQL
Sbjct: 32 VPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQL 88
Query: 433 TTFDMHSNRINGSIPL-EIGNLKHVEDVYLFNNKLD 467
T ++ N++ SIP NLK + ++L NN D
Sbjct: 89 TQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNNPWD 123
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 291 LFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSI 350
L+L +N T P L +LT LDL N L L +LT ++ N++ SI
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SI 101
Query: 351 PLEIGNFNFLQVL 363
P G F+ L+ L
Sbjct: 102 PR--GAFDNLKSL 112
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 180 SSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTE 239
+S+P I QVL L N+I P L +L LDL N+L LT+
Sbjct: 30 ASVPTGIPTTT--QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 87
Query: 240 LTFFNIYSNRINGSIPLEIGNFNFLQVL 267
LT ++ N++ SIP G F+ L+ L
Sbjct: 88 LTQLSLNDNQLK-SIPR--GAFDNLKSL 112
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 374 IPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSV-GHLTQL 432
+P+ I + + L+L +N T P L +LT LDL N L +P+ V LTQL
Sbjct: 24 VPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQL 80
Query: 433 TTFDMHSNRINGSIPL-EIGNLKHVEDVYLFNNKLD 467
T ++ N++ SIP NLK + ++L NN D
Sbjct: 81 TQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNNPWD 115
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 291 LFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSI 350
L+L +N T P L +LT LDL N L L +LT ++ N++ SI
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SI 93
Query: 351 PLEIGNFNFLQVL 363
P G F+ L+ L
Sbjct: 94 PR--GAFDNLKSL 104
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 180 SSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTE 239
+S+P I QVL L N+I P L +L LDL N+L LT+
Sbjct: 22 ASVPTGIPTTT--QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 240 LTFFNIYSNRINGSIPLEIGNFNFLQVL 267
LT ++ N++ SIP G F+ L+ L
Sbjct: 80 LTQLSLNDNQLK-SIPR--GAFDNLKSL 104
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 83/191 (43%), Gaps = 10/191 (5%)
Query: 265 QVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVG 324
Q + L N++ ++ + NLT L+L +N+ G + L L LDLS N +
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 325 PI-PSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVN 383
+ P++ L L T + + P LQ L L N L+ +T L N
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGN 153
Query: 384 LTSLFLCNNSQTGFIPSTLGHLNR-LTSLD---LSGNNLVGPIPSSVGHLTQLTTFDMHS 439
LT LFL N IPS H R L SLD L N++ P + L +L T + +
Sbjct: 154 LTHLFLHGNR----IPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFA 209
Query: 440 NRINGSIPLEI 450
N ++ +P E+
Sbjct: 210 NNLS-MLPAEV 219
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 73/191 (38%), Gaps = 5/191 (2%)
Query: 232 SSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYN-KLEGPIPSTIANLVNLTS 290
+S LT ++SN + G L+ LDLS N +L P+T L +L +
Sbjct: 49 ASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHT 108
Query: 291 LFL--CNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRING 348
L L C + G P L L L L NNL ++ L LT +H NRI
Sbjct: 109 LHLDRCGLQELG--PGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPS 166
Query: 349 SIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRL 408
+ L L L N + P L L +L+L N+ + L L L
Sbjct: 167 VPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSL 226
Query: 409 TSLDLSGNNLV 419
L L+ N V
Sbjct: 227 QYLRLNDNPWV 237
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 102/253 (40%), Gaps = 24/253 (9%)
Query: 176 NQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPI-PSSL 234
N+I+ ++ L +L L N + G + L L LDLS N + + P++
Sbjct: 41 NRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTF 100
Query: 235 GHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLC 294
L L ++ + P LQ L L N L+ +T +L NLT LFL
Sbjct: 101 RGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLH 160
Query: 295 NNSQTGFIPSTLGHLNR-LTSLD---LSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSI 350
N IPS H R L SLD L N++ P + L RL T + +N ++ +
Sbjct: 161 GNR----IPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS-ML 215
Query: 351 PLEI-GNFNFLQVLDLSYNKL-----EGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLG- 403
P E+ LQ L L+ N P+ + + +S CN +P L
Sbjct: 216 PAEVLVPLRSLQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCN------LPQRLAG 269
Query: 404 -HLNRLTSLDLSG 415
L RL + DL G
Sbjct: 270 RDLKRLAASDLEG 282
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 75/200 (37%), Gaps = 7/200 (3%)
Query: 317 LSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYN-KLEGPIP 375
L GN + +S LT +HSN + G L+ LDLS N +L P
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 376 STIASLVNLTSLFL--CNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLT 433
+T L +L +L L C + G P L L L L NNL ++ L LT
Sbjct: 98 TTFRGLGHLHTLHLDRCGLQELG--PGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLT 155
Query: 434 TFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQXXXXXXXXXXXXXXXXXXXX 493
+H NRI S+P H D L + + P
Sbjct: 156 HLFLHGNRI-PSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSM 214
Query: 494 IPSEI-GKLKELYYLDLSQN 512
+P+E+ L+ L YL L+ N
Sbjct: 215 LPAEVLVPLRSLQYLRLNDN 234
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%)
Query: 162 LGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDL 221
G L L L + NQ+ P E + +Q L L N+I L +L++L+L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 222 SLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPL 256
N++ +P S HL LT N+ SN N + L
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 320 NNLVGPIPSS--MGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPST 377
+N +G I S G L L ++ N++ G P + +Q L L NK++
Sbjct: 38 DNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM 97
Query: 378 IASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGN 416
L L +L L +N + +P + HLN LTSL+L+ N
Sbjct: 98 FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Query: 216 LRSLDLSLNE-LVGPIPSS--LGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYN 272
L + +L LN+ +G I S G L L + N++ G P + +Q L L N
Sbjct: 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88
Query: 273 KLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGN 320
K++ L L +L L +N + +P + HLN LTSL+L+ N
Sbjct: 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%)
Query: 354 IGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDL 413
G L L+L N+L G P+ ++ L L N L++L +L+L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 414 SGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPL 448
N + +P S HL LT+ ++ SN N + L
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 62/164 (37%), Gaps = 42/164 (25%)
Query: 69 HCKWTGISCNSAG--------SVTGVSLLLYENDNIKGELGRFNFSCFPNLKKMGRLRNL 120
HC+ T + C G + LLL NDN ELGR + GRL +L
Sbjct: 7 HCEGTTVDCTGRGLKEIPRDIPLHTTELLL--NDN---ELGRISSDGL-----FGRLPHL 56
Query: 121 VHLDLSDNYIEGYILPTLGHXXXXXXXXXXXXXXDGNIPSTLGHLTRLTTLAIASNQINS 180
V L+L N + G P+ + + L + N+I
Sbjct: 57 VKLELKRNQLTGIE------------------------PNAFEGASHIQELQLGENKIKE 92
Query: 181 SIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLN 224
L+ L+ L+L N+I +P + HL L SL+L+ N
Sbjct: 93 ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 73/167 (43%), Gaps = 12/167 (7%)
Query: 192 LQVLDLSRN--EIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNR 249
L+ LDLSRN G + L+ LDLS N ++ + LG L +L + +
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSN 407
Query: 250 ING----SIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNS-QTGFIPS 304
+ S+ L + N L LD+S+ L +L L + NS Q F+P
Sbjct: 408 LKQMSEFSVFLSLRN---LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464
Query: 305 TLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIP 351
L LT LDLS L P++ L+ L +M SN++ S+P
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVP 510
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 73/166 (43%), Gaps = 11/166 (6%)
Query: 312 LTSLDLSGNNLVGPIPSSMGHLARLTTFDM-HSN---RINGSIPLEIGNFNFLQVLDLSY 367
L LDLS N ++ + +G L +L D HSN S+ L + N L LD+S+
Sbjct: 375 LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRN---LIYLDISH 430
Query: 368 NKLEGPIPSTIASLVNLTSLFLCNNS-QTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSV 426
L +L L + NS Q F+P L LT LDLS L P++
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490
Query: 427 GHLTQLTTFDMHSNRINGSIPLEI-GNLKHVEDVYLFNNKLDGPIP 471
L+ L +M SN++ S+P I L ++ ++L N D P
Sbjct: 491 NSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 14/160 (8%)
Query: 227 VGPIPSSLGHLTELTFFNIYSNRINGSIPLEI--------GNFNF-----LQVLDLSYNK 273
V +P+ EL F+ I N + L++ G+++F LQVLDLS +
Sbjct: 4 VEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE 63
Query: 274 LEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHL 333
++ +L +L++L L N L+ L L NL +GHL
Sbjct: 64 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 334 ARLTTFDMHSNRING-SIPLEIGNFNFLQVLDLSYNKLEG 372
L ++ N I +P N L+ LDLS NK++
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 6/121 (4%)
Query: 354 IGNFNF-----LQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRL 408
+G+++F LQVLDLS +++ SL +L++L L N L+ L
Sbjct: 43 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102
Query: 409 TSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRING-SIPLEIGNLKHVEDVYLFNNKLD 467
L NL +GHL L ++ N I +P NL ++E + L +NK+
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Query: 468 G 468
Sbjct: 163 S 163
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Query: 110 NLKKMGR------LRNLVHLDLSDNYIEGYILPTL-GHXXXXXXXXXXXXXXDGNIPSTL 162
NLK+M LRNL++LD+S + G + +P
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466
Query: 163 GHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLD 220
L LT L ++ Q+ P +L+ LQVL+++ N++ S+P G RL SL
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL-KSVPD--GIFDRLTSLQ 521
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 162 LGHLTRLTTLAIASNQINS-SIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRL 216
+GHL L L +A N I S +P NL L+ LDLS N+I + L L ++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 374 IPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSV-GHLTQL 432
+P+ I + + L+L +N T P L +LT LDL N L +P+ V LTQL
Sbjct: 24 VPTGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQL 80
Query: 433 TTFDMHSNRINGSIPL-EIGNLKHVEDVYLFNNKLD 467
T ++ N++ SIP NL+ + ++L NN D
Sbjct: 81 TQLSLNDNQLK-SIPRGAFDNLRSLTHIWLLNNPWD 115
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 291 LFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSI 350
L+L +N T P L +LT LDL N L L +LT ++ N++ SI
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SI 93
Query: 351 PLEIGNFNFLQVL 363
P G F+ L+ L
Sbjct: 94 PR--GAFDNLRSL 104
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 98/246 (39%), Gaps = 22/246 (8%)
Query: 169 TTLAIASNQINSSIPLEIENLNFLQVLDLSRNEI---GGSIPSTLGHLKRLRSLDLSLNE 225
T L + SN++ S + L L L LS N + G S G L+ LDLS N
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG-TTSLKYLDLSFNG 89
Query: 226 LVGPIPSSLGHLTELTFFNIYSNRING----SIPLEIGNFNFLQVLDLSYNKLEGPIPST 281
++ + LG L +L + + + S+ L + N L LD+S+
Sbjct: 90 VITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRN---LIYLDISHTHTRVAFNGI 145
Query: 282 IANLVNLTSLFLCNNS-QTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFD 340
L +L L + NS Q F+P L LT LDLS L P++ L+ L +
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 341 MHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGP-------IPSTIASLVNLTS-LFLCNN 392
M N N LQVLD S N + PS++A +NLT F C
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA-FLNLTQNDFACTC 264
Query: 393 SQTGFI 398
F+
Sbjct: 265 EHQSFL 270
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 85/223 (38%), Gaps = 20/223 (8%)
Query: 36 GLLSSPIQLERKALLGTGWWVNNGATSGNYTSNHCKWTGISCNSAGSVTGVSLLLYENDN 95
G+ QL + +L G + ++ + K+ +S N G +T S N
Sbjct: 46 GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN--GVITMSS-------N 96
Query: 96 IKG--ELGRFNFSCFPNLKKMGR------LRNLVHLDLSDNYIEGYILPTL-GHXXXXXX 146
G +L +F NLK+M LRNL++LD+S + G
Sbjct: 97 FLGLEQLEHLDFQ-HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155
Query: 147 XXXXXXXXDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSI 206
+ +P L LT L ++ Q+ P +L+ LQVL++S N
Sbjct: 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215
Query: 207 PSTLGHLKRLRSLDLSLNELVGPIPSSLGHL-TELTFFNIYSN 248
L L+ LD SLN ++ L H + L F N+ N
Sbjct: 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 78/187 (41%), Gaps = 23/187 (12%)
Query: 267 LDLSYNKLEGPIPSTIANLVNLTSLFLCNN--------SQTGFIPSTLGHLNRLTSLDLS 318
L+L NKL+ L LT L L +N SQ+ F ++L +L DLS
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL------DLS 86
Query: 319 GNNLVGPIPSSMGHLARLTTFDM-HSN---RINGSIPLEIGNFNFLQVLDLSYNKLEGPI 374
N ++ + +G L +L D HSN S+ L + N L LD+S+
Sbjct: 87 FNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRN---LIYLDISHTHTRVAF 142
Query: 375 PSTIASLVNLTSLFLCNNS-QTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLT 433
L +L L + NS Q F+P L LT LDLS L P++ L+ L
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202
Query: 434 TFDMHSN 440
+M N
Sbjct: 203 VLNMSHN 209
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 80/211 (37%), Gaps = 36/211 (17%)
Query: 363 LDLSYNKLEGPIPSTIASLVNLTSLFLCNN--------SQTGFIPSTLGHLNRLTSLDLS 414
L+L NKL+ L LT L L +N SQ+ F ++L +L DLS
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL------DLS 86
Query: 415 GNNLVGPIPSSVGHLTQLTTFDM-HSN---RINGSIPLEIGNL-----KHVEDVYLFNNK 465
N ++ + +G L QL D HSN S+ L + NL H FN
Sbjct: 87 FNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145
Query: 466 LDGPIPPQXXXXXXXXXXXXXXXXXXXXIPSEIGKLKELYYLDLSQNFINGKIPSQLGEI 525
+G +P +L+ L +LDLSQ + P+ +
Sbjct: 146 FNG-------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198
Query: 526 PSIDTVNLCTNNLYGSIPESLRKVPSLCVDG 556
S+ +N+ NN + SL P C++
Sbjct: 199 SSLQVLNMSHNNFF-----SLDTFPYKCLNS 224
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 65/179 (36%), Gaps = 1/179 (0%)
Query: 291 LFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSN-RINGS 349
+FL N + ++ LT L L N L ++ LA L D+ N ++
Sbjct: 36 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 95
Query: 350 IPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLT 409
P L L L L+ P L L L+L +N+ T L LT
Sbjct: 96 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 155
Query: 410 SLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDG 468
L L GN + + L L +H NR+ P +L + +YLF N L
Sbjct: 156 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 214
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 84/202 (41%), Gaps = 3/202 (1%)
Query: 265 QVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVG 324
Q + L N++ ++ NLT L+L +N + L L LDLS N +
Sbjct: 34 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 325 PI-PSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVN 383
+ P++ L RL T + + P LQ L L N L+ T L N
Sbjct: 94 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 153
Query: 384 LTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRIN 443
LT LFL N + L+ L L L N + P + L +L T + +N ++
Sbjct: 154 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 213
Query: 444 GSIPLE-IGNLKHVEDVYLFNN 464
++P E + L+ ++ + L +N
Sbjct: 214 -ALPTEALAPLRALQYLRLNDN 234
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 77/203 (37%), Gaps = 27/203 (13%)
Query: 168 LTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSI-PSTLGHLKRLRSLDLSLNEL 226
LT L + SN + L L+ LDLS N S+ P+T L RL +L L L
Sbjct: 57 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 116
Query: 227 VGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLV 286
LG P LQ L L N L+ T +L
Sbjct: 117 -----QELG-------------------PGLFRGLAALQYLYLQDNALQALPDDTFRDLG 152
Query: 287 NLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRI 346
NLT LFL N + L+ L L L N + P + L RL T + +N +
Sbjct: 153 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 212
Query: 347 NGSIPLE-IGNFNFLQVLDLSYN 368
+ ++P E + LQ L L+ N
Sbjct: 213 S-ALPTEALAPLRALQYLRLNDN 234
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 47/138 (34%)
Query: 255 PLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTS 314
P L L L L+ P L L L+L +N+ T L LT
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 156
Query: 315 LDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPI 374
L L GN + + L L +H NR+ P + L L L N L
Sbjct: 157 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 216
Query: 375 PSTIASLVNLTSLFLCNN 392
+A L L L L +N
Sbjct: 217 TEALAPLRALQYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 65/179 (36%), Gaps = 1/179 (0%)
Query: 291 LFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSN-RINGS 349
+FL N + ++ LT L L N L ++ LA L D+ N ++
Sbjct: 37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96
Query: 350 IPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLT 409
P L L L L+ P L L L+L +N+ T L LT
Sbjct: 97 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156
Query: 410 SLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDG 468
L L GN + + L L +H NR+ P +L + +YLF N L
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 84/202 (41%), Gaps = 3/202 (1%)
Query: 265 QVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVG 324
Q + L N++ ++ NLT L+L +N + L L LDLS N +
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 325 PI-PSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVN 383
+ P++ L RL T + + P LQ L L N L+ T L N
Sbjct: 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154
Query: 384 LTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRIN 443
LT LFL N + L+ L L L N + P + L +L T + +N ++
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214
Query: 444 GSIPLE-IGNLKHVEDVYLFNN 464
++P E + L+ ++ + L +N
Sbjct: 215 -ALPTEALAPLRALQYLRLNDN 235
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 77/203 (37%), Gaps = 27/203 (13%)
Query: 168 LTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSI-PSTLGHLKRLRSLDLSLNEL 226
LT L + SN + L L+ LDLS N S+ P+T L RL +L L L
Sbjct: 58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117
Query: 227 VGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLV 286
LG P LQ L L N L+ T +L
Sbjct: 118 -----QELG-------------------PGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153
Query: 287 NLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRI 346
NLT LFL N + L+ L L L N + P + L RL T + +N +
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213
Query: 347 NGSIPLE-IGNFNFLQVLDLSYN 368
+ ++P E + LQ L L+ N
Sbjct: 214 S-ALPTEALAPLRALQYLRLNDN 235
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 47/138 (34%)
Query: 255 PLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTS 314
P L L L L+ P L L L+L +N+ T L LT
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157
Query: 315 LDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPI 374
L L GN + + L L +H NR+ P + L L L N L
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217
Query: 375 PSTIASLVNLTSLFLCNN 392
+A L L L L +N
Sbjct: 218 TEALAPLRALQYLRLNDN 235
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 103/277 (37%), Gaps = 34/277 (12%)
Query: 191 FLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRI 250
F + D +N G S++ HL SLN V L +L N+ N+I
Sbjct: 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV------FETLKDLKVLNLAYNKI 302
Query: 251 NGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLN 310
N + LQVL+LSYN L S L + + L N T L
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362
Query: 311 RLTSLDLSGNNL--VGPIPS------SMGHLARLTTFDMHSNRI--------NGSIPLEI 354
+L +LDL N L + IPS S L L ++ +N I N I +
Sbjct: 363 KLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFL 422
Query: 355 GNFNFLQVLDLSYNKLEG----PIPSTIASLVNLTSLFLCNNS-----QTGFIPSTLGHL 405
LQ+L L+ N+ PS S L LFL N +T L
Sbjct: 423 LRVPHLQILILNQNRFSSCSGDQTPSENPS---LEQLFLGENMLQLAWETELCWDVFEGL 479
Query: 406 NRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRI 442
+ L L L+ N L P HLT L ++SNR+
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 114/295 (38%), Gaps = 60/295 (20%)
Query: 165 LTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPS---------------- 208
L L L +A N+IN L+ LQVL+LS N +G S
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348
Query: 209 --------TLGHLKRLRSLDLSLNEL--VGPIPS------SLGHLTELTFFNIYSNRI-- 250
T L++L++LDL N L + IPS S L L N+ +N I
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHL 408
Query: 251 ------NGSIPLEIGNFNFLQVLDLSYNKLEGPI-PSTIANLVNLTSLFLCNNS-----Q 298
N I + LQ+L L+ N+ T + +L LFL N +
Sbjct: 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468
Query: 299 TGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRI----NGSIPLEI 354
T L+ L L L+ N L P HL L ++SNR+ + +P
Sbjct: 469 TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN- 527
Query: 355 GNFNFLQVLDLSYNKLEGPIPSTIASLVNLT---SLFLCNNSQTGFIPSTLGHLN 406
L++LD+S N+L P P SL L + F+C + FI + L H N
Sbjct: 528 -----LEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFI-NWLNHTN 576
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 360 LQVLDLSYNKLEGPIPSTIASLVNLTSL--FLCNNSQTGFIPSTLGHLNRLTSLDLSGNN 417
L++LDL +K+ P L +L L + C S +L LT LDLS N
Sbjct: 75 LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134
Query: 418 LVG-PIPSSVGHLTQLTTFDMHSNRI 442
+ + S G L L + D SN+I
Sbjct: 135 IRSLYLHPSFGKLNSLKSIDFSSNQI 160
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 264 LQVLDLSYNKLEGPIPSTIANLVNLTSL--FLCNNSQTGFIPSTLGHLNRLTSLDLSGNN 321
L++LDL +K+ P L +L L + C S +L LT LDLS N
Sbjct: 75 LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134
Query: 322 LVG-PIPSSMGHLARLTTFDMHSNRI 346
+ + S G L L + D SN+I
Sbjct: 135 IRSLYLHPSFGKLNSLKSIDFSSNQI 160
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 80/190 (42%), Gaps = 28/190 (14%)
Query: 162 LGHLTRLTTLAIASNQINSS--IPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSL 219
L L L TL ++ N I +S L+++NL+ LQ L+LS NE G +L L
Sbjct: 343 LEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELL 402
Query: 220 DLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIP 279
DL+ L P S P + N +FLQVL+L+Y L+
Sbjct: 403 DLAFTRLHINAPQS---------------------PFQ--NLHFLQVLNLTYCFLDTSNQ 439
Query: 280 STIANLVNLTSLFLC-NNSQTGFIPST--LGHLNRLTSLDLSGNNLVGPIPSSMGHLARL 336
+A L L L L N+ Q G I T L + L L LS L+ + L ++
Sbjct: 440 HLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKM 499
Query: 337 TTFDMHSNRI 346
+ D+ N +
Sbjct: 500 SHVDLSHNSL 509
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 3/180 (1%)
Query: 219 LDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPI 278
L+L+ N+L ++ ++LT ++ N I+ P L+VL+L +N+L
Sbjct: 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89
Query: 279 PSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTT 338
T A NLT L L +NS + L +LDLS N L + L L
Sbjct: 90 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQE 149
Query: 339 FDMHSNRING--SIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTG 396
+ +N+I S L+I + L+ L+LS N+++ P ++ L LFL NN Q G
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL-NNVQLG 208
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%)
Query: 312 LTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLE 371
+T L+L+ N L ++ ++LT+ D+ N I+ P L+VL+L +N+L
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 372 GPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNL 418
T A NLT L L +NS + L +LDLS N L
Sbjct: 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 108/285 (37%), Gaps = 33/285 (11%)
Query: 166 TRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNE 225
T +T L + NQ+ + L LD+ N I P L L+ L+L NE
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 226 LVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQ-----VLDLSYNKLEGPIPS 280
L + T LT ++ SN I +I N F++ LDLS+N L
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSIQ-----KIKNNPFVKQKNLITLDLSHNGLSSTKLG 139
Query: 281 TIANLVNLTSLFLCNNSQTGFIPSTLGHL--NRLTSLDLSGNNLVGPIPSSMGHLARLTT 338
T L NL L L NN L + L L+LS N + P + RL
Sbjct: 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199
Query: 339 FDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFI 398
+++ ++ S+ KL + +T ++L++ L S T F
Sbjct: 200 LFLNNVQLGPSLT----------------EKLCLELANTSIRNLSLSNSQLSTTSNTTF- 242
Query: 399 PSTLG-HLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRI 442
LG LT LDLS NNL S L QL F + N I
Sbjct: 243 ---LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 3/180 (1%)
Query: 219 LDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPI 278
L+L+ N+L ++ ++LT ++ N I+ P L+VL+L +N+L
Sbjct: 40 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 99
Query: 279 PSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTT 338
T A NLT L L +NS + L +LDLS N L + L L
Sbjct: 100 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQE 159
Query: 339 FDMHSNRING--SIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTG 396
+ +N+I S L+I + L+ L+LS N+++ P ++ L LFL NN Q G
Sbjct: 160 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL-NNVQLG 218
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%)
Query: 312 LTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLE 371
+T L+L+ N L ++ ++LT+ D+ N I+ P L+VL+L +N+L
Sbjct: 37 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
Query: 372 GPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNL 418
T A NLT L L +NS + L +LDLS N L
Sbjct: 97 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 143
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 108/285 (37%), Gaps = 33/285 (11%)
Query: 166 TRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNE 225
T +T L + NQ+ + L LD+ N I P L L+ L+L NE
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 226 LVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQ-----VLDLSYNKLEGPIPS 280
L + T LT ++ SN I +I N F++ LDLS+N L
Sbjct: 95 LSQLSDKTFAFCTNLTELHLMSNSIQ-----KIKNNPFVKQKNLITLDLSHNGLSSTKLG 149
Query: 281 TIANLVNLTSLFLCNNSQTGFIPSTLGHL--NRLTSLDLSGNNLVGPIPSSMGHLARLTT 338
T L NL L L NN L + L L+LS N + P + RL
Sbjct: 150 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 209
Query: 339 FDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFI 398
+++ ++ S+ KL + +T ++L++ L S T F
Sbjct: 210 LFLNNVQLGPSLT----------------EKLCLELANTSIRNLSLSNSQLSTTSNTTF- 252
Query: 399 PSTLG-HLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRI 442
LG LT LDLS NNL S L QL F + N I
Sbjct: 253 ---LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 294
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 74/178 (41%), Gaps = 14/178 (7%)
Query: 176 NQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLG 235
+ + S IP + E L DL + +T L +L L+L N+L
Sbjct: 27 DSVPSGIPADTEKL------DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD 80
Query: 236 HLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSY---NKLEGPIPSTIANLVNLTSLF 292
LTEL + +N++ S+PL G F+ L LD Y N+L+ L L L
Sbjct: 81 DLTELGTLGLANNQL-ASLPL--GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137
Query: 293 LCNNSQTGFIPS-TLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGS 349
L N +Q IP+ L L +L LS N L + L +L T + N+ + S
Sbjct: 138 L-NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Query: 264 LQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLV 323
L L+L YN+L+ +L L +L L NN HL +L L L GN L
Sbjct: 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK 120
Query: 324 GPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFL---QVLDLSYNKLE 371
L +L +++N++ SIP G F+ L Q L LS N+L+
Sbjct: 121 SLPSGVFDRLTKLKELRLNTNQLQ-SIP--AGAFDKLTNLQTLSLSTNQLQ 168
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 160 STLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSL 219
+T LT+LT L + NQ+ + ++L L L L+ N++ HL +L L
Sbjct: 53 ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112
Query: 220 DLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFL---QVLDLSYNKLE 275
L N+L LT+L + +N++ SIP G F+ L Q L LS N+L+
Sbjct: 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIP--AGAFDKLTNLQTLSLSTNQLQ 168
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 360 LQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLV 419
L L+L YN+L+ L L +L L NN HL +L L L GN L
Sbjct: 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL- 119
Query: 420 GPIPSSV-GHLTQLTTFDMHSNRINGSIP 447
+PS V LT+L +++N++ SIP
Sbjct: 120 KSLPSGVFDRLTKLKELRLNTNQLQ-SIP 147
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 56/154 (36%)
Query: 314 SLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGP 373
LDL L ++ L +LT ++ N++ + L L L+ N+L
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 374 IPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLT 433
L L L+L N L +L L L+ N L + LT L
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 434 TFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLD 467
T + +N++ L ++ + LF N+ D
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 164 HLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPS-TLGHLKRLRSLDLS 222
HLT+L L + NQ+ S + L L+ L L+ N++ SIP+ L L++L LS
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLS 163
Query: 223 LNELVGPIPSSLGHLTELTFFNIYSNRINGS 253
N+L + L +L ++ N+ + S
Sbjct: 164 TNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 3/147 (2%)
Query: 205 SIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFL 264
S+PS G LDL L ++ LT+LT+ N+ N++ + L
Sbjct: 28 SVPS--GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85
Query: 265 QVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVG 324
L L+ N+L +L L L+L N L +L L L+ N L
Sbjct: 86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145
Query: 325 PIPSSMGHLARLTTFDMHSNRINGSIP 351
+ L L T + +N++ S+P
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQLQ-SVP 171
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 3/180 (1%)
Query: 219 LDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPI 278
L+L+ N+L ++ ++LT ++ N I+ P L+VL+L +N+L
Sbjct: 35 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 94
Query: 279 PSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTT 338
T A NLT L L +NS + L +LDLS N L + L L
Sbjct: 95 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQE 154
Query: 339 FDMHSNRING--SIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTG 396
+ +N+I S L+I + L+ L+LS N+++ P ++ L LFL NN Q G
Sbjct: 155 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL-NNVQLG 213
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%)
Query: 312 LTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLE 371
+T L+L+ N L ++ ++LT+ D+ N I+ P L+VL+L +N+L
Sbjct: 32 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
Query: 372 GPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNL 418
T A NLT L L +NS + L +LDLS N L
Sbjct: 92 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 138
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 108/285 (37%), Gaps = 33/285 (11%)
Query: 166 TRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNE 225
T +T L + NQ+ + L LD+ N I P L L+ L+L NE
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 226 LVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQ-----VLDLSYNKLEGPIPS 280
L + T LT ++ SN I +I N F++ LDLS+N L
Sbjct: 90 LSQLSDKTFAFCTNLTELHLMSNSIQ-----KIKNNPFVKQKNLITLDLSHNGLSSTKLG 144
Query: 281 TIANLVNLTSLFLCNNSQTGFIPSTLGHL--NRLTSLDLSGNNLVGPIPSSMGHLARLTT 338
T L NL L L NN L + L L+LS N + P + RL
Sbjct: 145 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 204
Query: 339 FDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFI 398
+++ ++ S+ KL + +T ++L++ L S T F
Sbjct: 205 LFLNNVQLGPSLT----------------EKLCLELANTSIRNLSLSNSQLSTTSNTTF- 247
Query: 399 PSTLG-HLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRI 442
LG LT LDLS NNL S L QL F + N I
Sbjct: 248 ---LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 289
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 74/178 (41%), Gaps = 14/178 (7%)
Query: 176 NQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLG 235
+ + S IP + E L DL + +T L +L L+L N+L
Sbjct: 27 DSVPSGIPADTEKL------DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD 80
Query: 236 HLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSY---NKLEGPIPSTIANLVNLTSLF 292
LTEL + +N++ S+PL G F+ L LD Y N+L+ L L L
Sbjct: 81 DLTELGTLGLANNQL-ASLPL--GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137
Query: 293 LCNNSQTGFIPS-TLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGS 349
L N +Q IP+ L L +L LS N L + L +L T + N+ + S
Sbjct: 138 L-NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Query: 264 LQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLV 323
L L+L YN+L+ +L L +L L NN HL +L L L GN L
Sbjct: 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK 120
Query: 324 GPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFL---QVLDLSYNKLE 371
L +L +++N++ SIP G F+ L Q L LS N+L+
Sbjct: 121 SLPSGVFDRLTKLKELRLNTNQLQ-SIP--AGAFDKLTNLQTLSLSTNQLQ 168
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 160 STLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSL 219
+T LT+LT L + NQ+ + ++L L L L+ N++ HL +L L
Sbjct: 53 ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112
Query: 220 DLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFL---QVLDLSYNKLE 275
L N+L LT+L + +N++ SIP G F+ L Q L LS N+L+
Sbjct: 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIP--AGAFDKLTNLQTLSLSTNQLQ 168
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 360 LQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLV 419
L L+L YN+L+ L L +L L NN HL +L L L GN L
Sbjct: 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL- 119
Query: 420 GPIPSSV-GHLTQLTTFDMHSNRINGSIP 447
+PS V LT+L +++N++ SIP
Sbjct: 120 KSLPSGVFDRLTKLKELRLNTNQLQ-SIP 147
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 56/154 (36%)
Query: 314 SLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGP 373
LDL L ++ L +LT ++ N++ + L L L+ N+L
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 374 IPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLT 433
L L L+L N L +L L L+ N L + LT L
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 434 TFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLD 467
T + +N++ L ++ + LF N+ D
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 164 HLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPS-TLGHLKRLRSLDLS 222
HLT+L L + NQ+ S + L L+ L L+ N++ SIP+ L L++L LS
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLS 163
Query: 223 LNELVGPIPSSLGHLTELTFFNIYSNRINGS 253
N+L + L +L ++ N+ + S
Sbjct: 164 TNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 3/147 (2%)
Query: 205 SIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFL 264
S+PS G LDL L ++ LT+LT+ N+ N++ + L
Sbjct: 28 SVPS--GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85
Query: 265 QVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVG 324
L L+ N+L +L L L+L N L +L L L+ N L
Sbjct: 86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145
Query: 325 PIPSSMGHLARLTTFDMHSNRINGSIP 351
+ L L T + +N++ S+P
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQLQ-SVP 171
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 65/153 (42%), Gaps = 18/153 (11%)
Query: 271 YNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSM 330
++ L+ P A L +L S FL NS + ++ D+ +L + +
Sbjct: 408 FSTLKAVDPMRAAYLDDLRSKFLLENS-----------VLKMEYADVRVLHLAHKDLTVL 456
Query: 331 GHLARL---TTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSL 387
HL +L T D+ NR+ +P + L+VL S N LE +A+L L L
Sbjct: 457 CHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV--DGVANLPRLQEL 513
Query: 388 FLCNNS-QTGFIPSTLGHLNRLTSLDLSGNNLV 419
LCNN Q L RL L+L GN+L
Sbjct: 514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 234 LGHLTEL---TFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTS 290
L HL +L T ++ NR+ +P + L+VL S N LE +ANL L
Sbjct: 456 LCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV--DGVANLPRLQE 512
Query: 291 LFLCNNS-QTGFIPSTLGHLNRLTSLDLSGNNLV 323
L LCNN Q L RL L+L GN+L
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 65/153 (42%), Gaps = 18/153 (11%)
Query: 271 YNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSM 330
++ L+ P A L +L S FL NS + ++ D+ +L + +
Sbjct: 408 FSTLKAVDPMRAAYLDDLRSKFLLENS-----------VLKMEYADVRVLHLAHKDLTVL 456
Query: 331 GHLARL---TTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSL 387
HL +L T D+ NR+ +P + L+VL S N LE +A+L L L
Sbjct: 457 CHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV--DGVANLPRLQEL 513
Query: 388 FLCNNS-QTGFIPSTLGHLNRLTSLDLSGNNLV 419
LCNN Q L RL L+L GN+L
Sbjct: 514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 234 LGHLTEL---TFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTS 290
L HL +L T ++ NR+ +P + L+VL S N LE +ANL L
Sbjct: 456 LCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV--DGVANLPRLQE 512
Query: 291 LFLCNNS-QTGFIPSTLGHLNRLTSLDLSGNNLV 323
L LCNN Q L RL L+L GN+L
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 113/289 (39%), Gaps = 9/289 (3%)
Query: 168 LTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELV 227
+T L + NQ+ P + L +LD N I P L L+ L+L NEL
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Query: 228 GPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVN 287
+ T LT ++ SN I+ N L LDLS+N L T L N
Sbjct: 87 QISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLEN 146
Query: 288 LTSLFLCNNSQTGFIPSTLGHL--NRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNR 345
L L L N L L + L LDLS N L P + +L +++ +
Sbjct: 147 LQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQ 206
Query: 346 IN----GSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASL--VNLTSLFLCNNSQTGFIP 399
+N + E+ N + +Q L L+ N+L ST + L NLT L L N+
Sbjct: 207 LNPHLTEKLCWELSNTS-IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGN 265
Query: 400 STLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPL 448
+ +L L L L NN+ P S L+ L + S+ L
Sbjct: 266 GSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSL 314
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 118/298 (39%), Gaps = 46/298 (15%)
Query: 166 TRLTTLAIASNQINSSIPLEIENLNF--LQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSL 223
T + L++A+NQ+ ++ L + L LDLS N + + +L LR L L
Sbjct: 222 TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEY 281
Query: 224 NELVGPIPSSLGHLTELTFFNIYSNRINGSIPLE----IGNFNFLQVLDLSY-NKLEGPI 278
N + P S L+ L + ++ S+ L I +F+F + L Y N + I
Sbjct: 282 NNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNI 341
Query: 279 PSTIAN---------LVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSS 329
PST +N ++L+ F + T +L H + L +L+L+ N++ +
Sbjct: 342 PSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAH-SPLLTLNLTKNHISKIANGT 400
Query: 330 MGHLARLTTFDMHSNRINGSIPLE--IGNFNFLQVLDLSYNK--------------LEGP 373
L +L D+ N I + + G N ++ LSYNK L+
Sbjct: 401 FSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIY-LSYNKYLQLSTSSFALVPSLQRL 459
Query: 374 I------------PSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLV 419
+ PS L NLT L L NN+ L L L LD NNL
Sbjct: 460 MLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLA 517
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 74/184 (40%), Gaps = 19/184 (10%)
Query: 155 DGNIPSTLGH-LTRLTTLAIASNQINSSIPLEIENLNFLQV-------LDLSRNEIGGSI 206
D NIPST + T L +L S + + N F+ + L+L++N I
Sbjct: 338 DNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIA 397
Query: 207 PSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNF--- 263
T L +LR LDL LNE I L NI+ ++ + L++ +F
Sbjct: 398 NGTFSWLGQLRILDLGLNE----IEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALV 453
Query: 264 --LQVLDLSYNKLEGP--IPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSG 319
LQ L L L+ PS L NLT L L NN+ L L L LD
Sbjct: 454 PSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQH 513
Query: 320 NNLV 323
NNL
Sbjct: 514 NNLA 517
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 55/131 (41%), Gaps = 3/131 (2%)
Query: 289 TSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRING 348
T L L N F +TL RLT L+L L G L L T D+ N++
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQ- 90
Query: 349 SIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRL 408
S+PL L VLD+S+N+L + L L L+L N P L +L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 409 TSLDLSGNNLV 419
L L+ NNL
Sbjct: 151 EKLSLANNNLT 161
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 62/153 (40%), Gaps = 3/153 (1%)
Query: 194 VLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGS 253
+L LS N + +TL RL L+L EL G L L ++ N++ S
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQ-S 91
Query: 254 IPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLT 313
+PL L VLD+S+N+L + L L L+L N P L +L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 314 SLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRI 346
L L+ NNL + L L T + N +
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 55/131 (41%), Gaps = 3/131 (2%)
Query: 289 TSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRING 348
T L L N F +TL RLT L+L L G L L T D+ N++
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQ- 90
Query: 349 SIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRL 408
S+PL L VLD+S+N+L + L L L+L N P L +L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 409 TSLDLSGNNLV 419
L L+ NNL
Sbjct: 151 EKLSLANNNLT 161
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 62/153 (40%), Gaps = 3/153 (1%)
Query: 194 VLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGS 253
+L LS N + +TL RL L+L EL G L L ++ N++ S
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQ-S 91
Query: 254 IPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLT 313
+PL L VLD+S+N+L + L L L+L N P L +L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 314 SLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRI 346
L L+ NNL + L L T + N +
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 55/131 (41%), Gaps = 3/131 (2%)
Query: 289 TSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRING 348
T L L N F +TL RLT L+L L G L L T D+ N++
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQ- 90
Query: 349 SIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRL 408
S+PL L VLD+S+N+L + L L L+L N P L +L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 409 TSLDLSGNNLV 419
L L+ NNL
Sbjct: 151 EKLSLANNNLT 161
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 62/153 (40%), Gaps = 3/153 (1%)
Query: 194 VLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGS 253
+L LS N + +TL RL L+L EL G L L ++ N++ S
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQ-S 91
Query: 254 IPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLT 313
+PL L VLD+S+N+L + L L L+L N P L +L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 314 SLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRI 346
L L+ NNL + L L T + N +
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 98/259 (37%), Gaps = 34/259 (13%)
Query: 193 QVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRING 252
Q ++L+ +I ++P + ++LDLS N L HL +FF+
Sbjct: 13 QCMELNFYKIPDNLPFST------KNLDLSFN--------PLRHLGSYSFFS-------- 50
Query: 253 SIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRL 312
F LQVLDLS +++ +L +L++L L N L+ L
Sbjct: 51 --------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102
Query: 313 TSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRING-SIPLEIGNFNFLQVLDLSYNKLE 371
L NL +GHL L ++ N I +P N L+ LDLS NK++
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Query: 372 GPIPSTIASLVNLTSLFLCNNSQT---GFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGH 428
+ + L + L L + FI RL L L N L
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDR 222
Query: 429 LTQLTTFDMHSNRINGSIP 447
LT L +H+N + S P
Sbjct: 223 LTSLQKIWLHTNPWDCSCP 241
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 6/121 (4%)
Query: 354 IGNFNF-----LQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRL 408
+G+++F LQVLDLS +++ SL +L++L L N L+ L
Sbjct: 43 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102
Query: 409 TSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRING-SIPLEIGNLKHVEDVYLFNNKLD 467
L NL +GHL L ++ N I +P NL ++E + L +NK+
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Query: 468 G 468
Sbjct: 163 S 163
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 162 LGHLTRLTTLAIASNQINS-SIPLEIENLNFLQVLDLSRNEI 202
+GHL L L +A N I S +P NL L+ LDLS N+I
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 98/259 (37%), Gaps = 34/259 (13%)
Query: 193 QVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRING 252
Q ++L+ +I ++P + ++LDLS N L HL +FF+
Sbjct: 15 QCMELNFYKIPDNLPFST------KNLDLSWN--------PLRHLGSYSFFS-------- 52
Query: 253 SIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRL 312
F LQVLDLS +++ +L +L++L L N L+ L
Sbjct: 53 --------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 104
Query: 313 TSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRING-SIPLEIGNFNFLQVLDLSYNKLE 371
L NL +GHL L ++ N I +P N L+ LDLS NK++
Sbjct: 105 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
Query: 372 GPIPSTIASLVNLTSLFLCNNSQT---GFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGH 428
+ + L + L L + FI RL L L N L
Sbjct: 165 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDR 224
Query: 429 LTQLTTFDMHSNRINGSIP 447
LT L +H+N + S P
Sbjct: 225 LTSLQKIWLHTNPWDCSCP 243
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 6/121 (4%)
Query: 354 IGNFNF-----LQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRL 408
+G+++F LQVLDLS +++ SL +L++L L N L+ L
Sbjct: 45 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 104
Query: 409 TSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRING-SIPLEIGNLKHVEDVYLFNNKLD 467
L NL +GHL L ++ N I +P NL ++E + L +NK+
Sbjct: 105 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
Query: 468 G 468
Sbjct: 165 S 165
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 162 LGHLTRLTTLAIASNQINS-SIPLEIENLNFLQVLDLSRNEI 202
+GHL L L +A N I S +P NL L+ LDLS N+I
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 98/259 (37%), Gaps = 34/259 (13%)
Query: 193 QVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRING 252
Q ++L+ +I ++P + ++LDLS N L HL +FF+
Sbjct: 14 QCMELNFYKIPDNLPFST------KNLDLSWN--------PLRHLGSYSFFS-------- 51
Query: 253 SIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRL 312
F LQVLDLS +++ +L +L++L L N L+ L
Sbjct: 52 --------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 103
Query: 313 TSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRING-SIPLEIGNFNFLQVLDLSYNKLE 371
L NL +GHL L ++ N I +P N L+ LDLS NK++
Sbjct: 104 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
Query: 372 GPIPSTIASLVNLTSLFLCNNSQT---GFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGH 428
+ + L + L L + FI RL L L N L
Sbjct: 164 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDR 223
Query: 429 LTQLTTFDMHSNRINGSIP 447
LT L +H+N + S P
Sbjct: 224 LTSLQKIWLHTNPWDCSCP 242
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 6/121 (4%)
Query: 354 IGNFNF-----LQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRL 408
+G+++F LQVLDLS +++ SL +L++L L N L+ L
Sbjct: 44 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 103
Query: 409 TSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRING-SIPLEIGNLKHVEDVYLFNNKLD 467
L NL +GHL L ++ N I +P NL ++E + L +NK+
Sbjct: 104 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
Query: 468 G 468
Sbjct: 164 S 164
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 162 LGHLTRLTTLAIASNQINS-SIPLEIENLNFLQVLDLSRNEI 202
+GHL L L +A N I S +P NL L+ LDLS N+I
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 103/275 (37%), Gaps = 42/275 (15%)
Query: 177 QINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGH 236
++ +I + E LNF ++ D ++P + ++LDLS N L H
Sbjct: 6 EVVPNITYQCEELNFYKIPD--------NLPFST------KNLDLSFN--------PLRH 43
Query: 237 LTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNN 296
L +FF+ F LQVLDLS +++ +L +L++L L N
Sbjct: 44 LGSYSFFS----------------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 87
Query: 297 SQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRING-SIPLEIG 355
L+ L L NL +GHL L ++ N I +P
Sbjct: 88 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 147
Query: 356 NFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQT---GFIPSTLGHLNRLTSLD 412
N L+ LDLS NK++ + + L + L L + FI RL L
Sbjct: 148 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELA 207
Query: 413 LSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIP 447
L N L LT L +H+N + S P
Sbjct: 208 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 242
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 6/121 (4%)
Query: 354 IGNFNF-----LQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRL 408
+G+++F LQVLDLS +++ SL +L++L L N L+ L
Sbjct: 44 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 103
Query: 409 TSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRING-SIPLEIGNLKHVEDVYLFNNKLD 467
L NL +GHL L ++ N I +P NL ++E + L +NK+
Sbjct: 104 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
Query: 468 G 468
Sbjct: 164 S 164
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 76/193 (39%), Gaps = 5/193 (2%)
Query: 280 STIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTF 339
+ N +N + NNS + + +L + L L GN L S++ L LT
Sbjct: 34 AVTQNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDI--SALKELTNLTYL 90
Query: 340 DMHSNRINGSIPLEI-GNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFI 398
+ N++ S+P + L+ L L N+L+ L NLT L L +N
Sbjct: 91 ILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP 149
Query: 399 PSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVED 458
L LT LDLS N L LTQL ++ N++ L ++
Sbjct: 150 KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 209
Query: 459 VYLFNNKLDGPIP 471
++L +N D P
Sbjct: 210 IWLHDNPWDCTCP 222
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 162 LGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDL 221
LT L L + NQ+ S + L L L+L+ N++ L L LDL
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164
Query: 222 SLNELVGPIPSSLGHLTELTFFNIYSNRINGSIP 255
S N+L LT+L +Y N++ S+P
Sbjct: 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVP 197
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 3/121 (2%)
Query: 232 SSLGHLTELTFFNIYSNRINGSIPLEI-GNFNFLQVLDLSYNKLEGPIPSTIANLVNLTS 290
S+L LT LT+ + N++ S+P + L+ L L N+L+ L NLT
Sbjct: 79 SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 291 LFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSI 350
L L +N L LT LDLS N L L +L ++ N++ S+
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SV 196
Query: 351 P 351
P
Sbjct: 197 P 197
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 40/94 (42%)
Query: 162 LGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDL 221
LT LT L +A NQ+ S + L L LDLS N++ L +L+ L L
Sbjct: 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188
Query: 222 SLNELVGPIPSSLGHLTELTFFNIYSNRINGSIP 255
N+L LT L + ++ N + + P
Sbjct: 189 YQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 55/130 (42%), Gaps = 3/130 (2%)
Query: 289 TSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRING 348
T L L N F +TL RLT L+L L G L L T D+ N++
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ- 90
Query: 349 SIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRL 408
S+PL L VLD+S+N+L + L L L+L N P L +L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 409 TSLDLSGNNL 418
L L+ NNL
Sbjct: 151 EKLSLANNNL 160
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 62/153 (40%), Gaps = 3/153 (1%)
Query: 194 VLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGS 253
+L LS N + +TL RL L+L EL G L L ++ N++ S
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ-S 91
Query: 254 IPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLT 313
+PL L VLD+S+N+L + L L L+L N P L +L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 314 SLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRI 346
L L+ NNL + L L T + N +
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 55/131 (41%), Gaps = 3/131 (2%)
Query: 289 TSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRING 348
T L L N F +TL RLT L+L L G L L T D+ N++
Sbjct: 35 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ- 91
Query: 349 SIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRL 408
S+PL L VLD+S+N+L + L L L+L N P L +L
Sbjct: 92 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 151
Query: 409 TSLDLSGNNLV 419
L L+ NNL
Sbjct: 152 EKLSLANNNLT 162
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 62/153 (40%), Gaps = 3/153 (1%)
Query: 194 VLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGS 253
+L LS N + +TL RL L+L EL G L L ++ N++ S
Sbjct: 36 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ-S 92
Query: 254 IPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLT 313
+PL L VLD+S+N+L + L L L+L N P L +L
Sbjct: 93 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 152
Query: 314 SLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRI 346
L L+ NNL + L L T + N +
Sbjct: 153 KLSLANNNLTELPAGLLNGLENLDTLLLQENSL 185
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 98/259 (37%), Gaps = 34/259 (13%)
Query: 193 QVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRING 252
Q ++L+ +I ++P + ++LDLS N L HL +FF+
Sbjct: 15 QCMELNFYKIPDNLPFST------KNLDLSFN--------PLRHLGSYSFFS-------- 52
Query: 253 SIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRL 312
F LQVLDLS +++ +L +L++L L N L+ L
Sbjct: 53 --------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 104
Query: 313 TSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRING-SIPLEIGNFNFLQVLDLSYNKLE 371
L NL +GHL L ++ N I +P N L+ LDLS NK++
Sbjct: 105 QKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
Query: 372 GPIPSTIASLVNLTSLFLCNNSQT---GFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGH 428
+ + L + L L + FI RL L L N L
Sbjct: 165 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDR 224
Query: 429 LTQLTTFDMHSNRINGSIP 447
LT L +H+N + S P
Sbjct: 225 LTSLQKIWLHTNPWDCSCP 243
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 6/121 (4%)
Query: 354 IGNFNF-----LQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRL 408
+G+++F LQVLDLS +++ SL +L++L L N L+ L
Sbjct: 45 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 104
Query: 409 TSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRING-SIPLEIGNLKHVEDVYLFNNKLD 467
L NL +GHL L ++ N I +P NL ++E + L +NK+
Sbjct: 105 QKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
Query: 468 G 468
Sbjct: 165 S 165
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 162 LGHLTRLTTLAIASNQINS-SIPLEIENLNFLQVLDLSRNEI 202
+GHL L L +A N I S +P NL L+ LDLS N+I
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 74/189 (39%), Gaps = 5/189 (2%)
Query: 280 STIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTF 339
+ N +N + NNS + + +L + L L GN L S++ L LT
Sbjct: 34 AVTQNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDI--SALKELTNLTYL 90
Query: 340 DMHSNRINGSIPLEI-GNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFI 398
+ N++ S+P + L+ L L N+L+ L NLT L+L +N
Sbjct: 91 ILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLP 149
Query: 399 PSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVED 458
L LT LDL N L LTQL ++ N++ L +
Sbjct: 150 KGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTH 209
Query: 459 VYLFNNKLD 467
++L NN D
Sbjct: 210 IWLLNNPWD 218
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 3/121 (2%)
Query: 232 SSLGHLTELTFFNIYSNRINGSIPLEI-GNFNFLQVLDLSYNKLEGPIPSTIANLVNLTS 290
S+L LT LT+ + N++ S+P + L+ L L N+L+ L NLT
Sbjct: 79 SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 291 LFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSI 350
L+L +N L LT LDL N L L +L ++ N++ S+
Sbjct: 138 LYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK-SV 196
Query: 351 P 351
P
Sbjct: 197 P 197
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 9/156 (5%)
Query: 162 LGHLTRLTTLAIASNQINSSIPL-EIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLD 220
+ +L + LA+ N+++ L E+ NL +L L+ N++ L L+ L
Sbjct: 59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLI---LTGNQLQSLPNGVFDKLTNLKELV 115
Query: 221 LSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEI-GNFNFLQVLDLSYNKLEGPIP 279
L N+L LT LT+ +Y N++ S+P + L LDL N+L+
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQSLPE 174
Query: 280 STIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSL 315
L L L L N++Q +P G +RLTSL
Sbjct: 175 GVFDKLTQLKQLSL-NDNQLKSVPD--GVFDRLTSL 207
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 56/137 (40%)
Query: 160 STLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSL 219
S L LT LT L + NQ+ S + L L+ L L N++ L L L
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 220 DLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIP 279
L N+L LT LT ++ +N++ L+ L L+ N+L+
Sbjct: 139 YLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPD 198
Query: 280 STIANLVNLTSLFLCNN 296
L +LT ++L NN
Sbjct: 199 GVFDRLTSLTHIWLLNN 215
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 93/209 (44%), Gaps = 23/209 (11%)
Query: 180 SSIPLE--IENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHL 237
+ P+E ++ L L+ N++ G +P+ G +L SL+L+ N++ IP++
Sbjct: 318 KTFPVETSLQKXKKLGXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQIT-EIPANFCGF 375
Query: 238 TELTFFNIYSNRINGSIP--LEIGNFNFLQVLDLSYNKLEG-------PIPSTIANLVNL 288
TE +++ IP + + + +D SYN++ P+ T +N+
Sbjct: 376 TEQVENLSFAHNKLKYIPNIFDAKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435
Query: 289 TSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPS--------SMGHLARLTTFD 340
+S+ L NN + F + L+S++L GN L IP + + LT+ D
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLXGNXLT-EIPKNSLKDENENFKNTYLLTSID 494
Query: 341 MHSNRING-SIPLEIGNFNFLQVLDLSYN 368
+ N++ S +L +DLSYN
Sbjct: 495 LRFNKLTKLSDDFRATTLPYLVGIDLSYN 523
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 89/197 (45%), Gaps = 21/197 (10%)
Query: 264 LQVLDLSYNKLEG-PIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNL 322
+Q++ + YN L+ P+ +++ L L N G +P+ G +L SL+L+ N +
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQI 365
Query: 323 VGPIPSSM-GHLARLTTFDMHSNRINGSIP--LEIGNFNFLQVLDLSYNKLEG------- 372
IP++ G ++ N++ IP + + + +D SYN++
Sbjct: 366 T-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVXSAIDFSYNEIGSVDGKNFD 423
Query: 373 PIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQ- 431
P+ T +N++S+ L NN + F + L+S++L GN L +S+ +
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLTEIPKNSLKDENEN 483
Query: 432 ------LTTFDMHSNRI 442
LT+ D+ N++
Sbjct: 484 FKNTYLLTSIDLRFNKL 500
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 6/163 (3%)
Query: 312 LTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRING--SIPLEIGNFNFLQVLDLSYNK 369
T L+ + N + L RL T + N + + L N + L+ LD+S N
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414
Query: 370 LEG-PIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGH 428
L T A ++ L L +N TG + L ++ LDL NN + IP V H
Sbjct: 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDL-HNNRIMSIPKDVTH 471
Query: 429 LTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIP 471
L L ++ SN++ L ++ ++L +N D P
Sbjct: 472 LQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 23/173 (13%)
Query: 162 LGHLTRLTTLAIASNQINSSIPLEIENLNF---LQVLDLSRNEIGGSIPSTLGHLKRLRS 218
+ L+ L L ++ N+I S L+ F L+ LD+S N + + + LR
Sbjct: 72 ISFLSELRVLRLSHNRIRS---LDFHVFLFNQDLEYLDVSHNRLQNI---SCCPMASLRH 125
Query: 219 LDLSLNEL-VGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQV-LDLSYNKLEG 276
LDLS N+ V P+ G+LT+LTF + + + L + + + + LDL ++G
Sbjct: 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKG 185
Query: 277 ------PIP-STIANLV-NLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNN 321
IP +T+ +LV + SLF + Q + LGHL +L+++ L+ N
Sbjct: 186 GETESLQIPNTTVLHLVFHPNSLF---SVQVNMSVNALGHL-QLSNIKLNDEN 234
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 16/190 (8%)
Query: 258 IGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDL 317
+G+F+F+ L L + P + + ++V+ + N +P L R +L L
Sbjct: 9 VGSFHFVCALALIVGSM-TPFSNELESMVDYS------NRNLTHVPKDLP--PRTKALSL 59
Query: 318 SGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNF-LQVLDLSYNKLEGPIPS 376
S N++ + L+ L + NRI S+ + FN L+ LD+S+N+L+
Sbjct: 60 SQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQNISCC 118
Query: 377 TIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNL--VGPIPSSVGHLTQLTT 434
+ASL +L F N+ + G+L +LT L LS + +P + HL+ +
Sbjct: 119 PMASLRHLDLSF--NDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCI-L 175
Query: 435 FDMHSNRING 444
D+ S I G
Sbjct: 176 LDLVSYHIKG 185
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 192 LQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRIN 251
++VLDL N I SIP + HL+ L+ L+++ N+L LT L + ++ N +
Sbjct: 452 VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510
Query: 252 GSIP 255
+ P
Sbjct: 511 CTCP 514
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 89/216 (41%), Gaps = 9/216 (4%)
Query: 158 IPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLR 217
+P + TRL L + NQI ++L L++L LSRN I L L
Sbjct: 58 VPDGISTNTRL--LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLN 115
Query: 218 SLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDL-SYNKLEG 276
+L+L N L + +L++L + +N I L+ LDL +L
Sbjct: 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY 175
Query: 277 PIPSTIANLVNLT--SLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLA 334
L NL +L +CN + IP+ L L +L LDLSGN+L P S L
Sbjct: 176 ISEGAFEGLSNLRYLNLAMCNLRE---IPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLM 231
Query: 335 RLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKL 370
L M ++I N L ++L++N L
Sbjct: 232 HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 91/229 (39%), Gaps = 25/229 (10%)
Query: 238 TELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNS 297
T N++ N+I + L++L LS N + L NL +L L +N
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123
Query: 298 QTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNF 357
T +L++L L L NN + IPS NRI L++G
Sbjct: 124 LTTIPNGAFVYLSKLKELWLR-NNPIESIPSYA------------FNRIPSLRRLDLGEL 170
Query: 358 NFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNN 417
L + S EG S + +L +CN + IP+ L L +L LDLSGN+
Sbjct: 171 KRLSYI--SEGAFEG------LSNLRYLNLAMCNLRE---IPN-LTPLIKLDELDLSGNH 218
Query: 418 LVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKL 466
L P S L L M ++I NL+ + ++ L +N L
Sbjct: 219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 55/131 (41%), Gaps = 3/131 (2%)
Query: 289 TSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRING 348
T L L N F +TL RLT L+L L G L L T D+ N++
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ- 90
Query: 349 SIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRL 408
S+PL L VLD+S+N+L + L L L+L N P L +L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 409 TSLDLSGNNLV 419
L L+ N+L
Sbjct: 151 EKLSLANNDLT 161
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 3/153 (1%)
Query: 194 VLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGS 253
+L LS N + +TL RL L+L EL G L L ++ N++ S
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ-S 91
Query: 254 IPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLT 313
+PL L VLD+S+N+L + L L L+L N P L +L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 314 SLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRI 346
L L+ N+L + L L T + N +
Sbjct: 152 KLSLANNDLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 254 IPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLT 313
+P E+ N+ L ++DLS N++ + +N+ L +L L N P T L L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 314 SLDLSGNNLVGPIP-------SSMGHLA 334
L L GN+ + +P S++ HLA
Sbjct: 106 LLSLHGND-ISVVPEGAFNDLSALSHLA 132
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 54/131 (41%), Gaps = 3/131 (2%)
Query: 288 LTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRIN 347
L ++ C+N +P G +T L L GN +P + + LT D+ +NRI+
Sbjct: 11 LDTVVRCSNKGLKVLPK--GIPRDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRIS 67
Query: 348 GSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNR 407
N L L LSYN+L P T L +L L L N + L+
Sbjct: 68 TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA 127
Query: 408 LTSLDLSGNNL 418
L+ L + N L
Sbjct: 128 LSHLAIGANPL 138
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 383 NLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRI 442
++T L+L + +Q +P L + LT +DLS N + S ++TQL T + NR+
Sbjct: 32 DVTELYL-DGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 443 NGSIPLEIGNLKHVEDVYLFNNKL 466
P LK + + L N +
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDI 114
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 39/93 (41%)
Query: 230 IPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLT 289
+P L + LT ++ +NRI+ N L L LSYN+L P T L +L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 290 SLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNL 322
L L N + L+ L+ L + N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 155 DGN----IPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTL 210
DGN +P L + LT + +++N+I++ N+ L L LS N + P T
Sbjct: 39 DGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTF 98
Query: 211 GHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSN 248
LK LR L L N++ + L+ L+ I +N
Sbjct: 99 DGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 54/131 (41%), Gaps = 3/131 (2%)
Query: 289 TSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRING 348
T L L N F +TL RLT L+L L G L L T D+ N++
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ- 90
Query: 349 SIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRL 408
S+PL L VLD+S+N+L + L L L+L N P L +L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 409 TSLDLSGNNLV 419
L L+ N L
Sbjct: 151 EKLSLANNQLT 161
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 61/153 (39%), Gaps = 3/153 (1%)
Query: 194 VLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGS 253
+L LS N + +TL RL L+L EL G L L ++ N++ S
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ-S 91
Query: 254 IPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLT 313
+PL L VLD+S+N+L + L L L+L N P L +L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 314 SLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRI 346
L L+ N L + L L T + N +
Sbjct: 152 KLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 163 GHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLS 222
G L L TL ++ NQ+ S +PL + L L VLD+S N + L L L+ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 223 LNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLD 268
NEL P L +L ++ +N++ L G N L+ LD
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTE---LPAGLLNGLENLD 175
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 54/130 (41%), Gaps = 3/130 (2%)
Query: 289 TSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRING 348
T L L N F +TL RLT L+L L G L L T D+ N++
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ- 90
Query: 349 SIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRL 408
S+PL L VLD+S+N+L + L L L+L N P L +L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 409 TSLDLSGNNL 418
L L+ N L
Sbjct: 151 EKLSLANNQL 160
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 61/153 (39%), Gaps = 3/153 (1%)
Query: 194 VLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGS 253
+L LS N + +TL RL L+L EL G L L ++ N++ S
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ-S 91
Query: 254 IPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLT 313
+PL L VLD+S+N+L + L L L+L N P L +L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 314 SLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRI 346
L L+ N L + L L T + N +
Sbjct: 152 KLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 54/130 (41%), Gaps = 3/130 (2%)
Query: 289 TSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRING 348
T L L N F +TL RLT L+L L G L L T D+ N++
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ- 90
Query: 349 SIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRL 408
S+PL L VLD+S+N+L + L L L+L N P L +L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 409 TSLDLSGNNL 418
L L+ N L
Sbjct: 151 EKLSLANNQL 160
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 61/153 (39%), Gaps = 3/153 (1%)
Query: 194 VLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGS 253
+L LS N + +TL RL L+L EL G L L ++ N++ S
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ-S 91
Query: 254 IPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLT 313
+PL L VLD+S+N+L + L L L+L N P L +L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 314 SLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRI 346
L L+ N L + L L T + N +
Sbjct: 152 KLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 54/130 (41%), Gaps = 3/130 (2%)
Query: 289 TSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRING 348
T L L N F +TL RLT L+L L G L L T D+ N++
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ- 90
Query: 349 SIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRL 408
S+PL L VLD+S+N+L + L L L+L N P L +L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 409 TSLDLSGNNL 418
L L+ N L
Sbjct: 151 EKLSLANNQL 160
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 61/153 (39%), Gaps = 3/153 (1%)
Query: 194 VLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGS 253
+L LS N + +TL RL L+L EL G L L ++ N++ S
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ-S 91
Query: 254 IPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLT 313
+PL L VLD+S+N+L + L L L+L N P L +L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 314 SLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRI 346
L L+ N L + L L T + N +
Sbjct: 152 KLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 7/156 (4%)
Query: 217 RSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEG 276
+ +D L+++ IPSS ++ +L+F N + NF+ LQ LDLS ++E
Sbjct: 12 QCMDQKLSKVPDDIPSSTKNI-DLSF-----NPLKILKSYSFSNFSELQWLDLSRCEIET 65
Query: 277 PIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARL 336
L +L++L L N F P + L L +L L +G L L
Sbjct: 66 IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 125
Query: 337 TTFDMHSNRING-SIPLEIGNFNFLQVLDLSYNKLE 371
++ N I+ +P N L +DLSYN ++
Sbjct: 126 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 161
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 7/156 (4%)
Query: 217 RSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEG 276
+ +D L+++ IPSS ++ +L+F N + NF+ LQ LDLS ++E
Sbjct: 17 QCMDQKLSKVPDDIPSSTKNI-DLSF-----NPLKILKSYSFSNFSELQWLDLSRCEIET 70
Query: 277 PIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARL 336
L +L++L L N F P + L L +L L +G L L
Sbjct: 71 IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130
Query: 337 TTFDMHSNRING-SIPLEIGNFNFLQVLDLSYNKLE 371
++ N I+ +P N L +DLSYN ++
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 83/205 (40%), Gaps = 7/205 (3%)
Query: 265 QVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVG 324
+ L+L N ++ T +L +L L L N L L +L+L N L
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 325 PIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDL-SYNKLEGPIPSTIASLVN 383
+ +L++L + +N I L+ LDL +LE + LVN
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVN 157
Query: 384 LTSLFL--CNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNR 441
L L L CN IP+ L L RL L+LSGN L P S LT L + +
Sbjct: 158 LRYLNLGMCNLKD---IPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQ 213
Query: 442 INGSIPLEIGNLKHVEDVYLFNNKL 466
+ +LK +E++ L +N L
Sbjct: 214 VATIERNAFDDLKSLEELNLSHNNL 238
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 94/216 (43%), Gaps = 7/216 (3%)
Query: 162 LGHLTRLTTLAIASNQINSS--IPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSL 219
L L L L ++ + I +S L+++NL LQ L+LS NE G +L L
Sbjct: 345 LEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELL 404
Query: 220 DLSLNELVGPIPSS-LGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLE-GP 277
D++ L P S +L L N+ ++ S + L+ L+L N + G
Sbjct: 405 DVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGS 464
Query: 278 IPST-IANLVNLTSLFLCNNSQTGFIPSTLGH-LNRLTSLDLSGNNLVGPIPSSMGHLAR 335
I T + +V + + ++ I H L + LDLS N+L G ++ HL
Sbjct: 465 ISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKG 524
Query: 336 LTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLE 371
L +M SN I P + + +++LS+N L+
Sbjct: 525 L-YLNMASNNIRIIPPHLLPALSQQSIINLSHNPLD 559
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 105/264 (39%), Gaps = 51/264 (19%)
Query: 186 IENLNFLQVLDLSRNEIGGSIPS--TLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFF 243
+E L LQ LDLS ++I S L +L+ L+ L+LS NE +G + +L
Sbjct: 345 LEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELL 404
Query: 244 NIYSNRINGSIPLE-IGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNS-QTGF 301
++ ++ P N + L+VL+LS+ L+ +A L +L L L NS Q G
Sbjct: 405 DVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGS 464
Query: 302 IPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQ 361
I T NL+ + S L+
Sbjct: 465 ISKT---------------NLLQMVGS-------------------------------LE 478
Query: 362 VLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGP 421
+L LS L L N+ L L +NS TG L HL L L+++ NN+
Sbjct: 479 ILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLY-LNMASNNIRII 537
Query: 422 IPSSVGHLTQLTTFDMHSNRINGS 445
P + L+Q + ++ N ++ +
Sbjct: 538 PPHLLPALSQQSIINLSHNPLDCT 561
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 91/250 (36%), Gaps = 66/250 (26%)
Query: 278 IPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLT 337
+P T L +L L N +P+++ LNRL L + + +P LA
Sbjct: 119 LPDTXQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEP---LASTD 174
Query: 338 TFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGF 397
H +N LQ L L + + +P++IA+L NL SL + N+ +
Sbjct: 175 ASGEHQGLVN------------LQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSAL 221
Query: 398 IPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVE 457
P+ + HL +L LDL G + P G G PL+ LK
Sbjct: 222 GPA-IHHLPKLEELDLRGCTALRNYPPIFG----------------GRAPLKRLILKDCS 264
Query: 458 DVYLFNNKLDGPIPPQXXXXXXXXXXXXXXXXXXXXIPSEIGKLKELYYLDLSQNFINGK 517
++ +P +I +L +L LDL +
Sbjct: 265 NLL--------------------------------TLPLDIHRLTQLEKLDLRGCVNLSR 292
Query: 518 IPSQLGEIPS 527
+PS + ++P+
Sbjct: 293 LPSLIAQLPA 302
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 70/184 (38%), Gaps = 32/184 (17%)
Query: 181 SIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDL----SLNELVGPIPSSLGH 236
+P + L+ L L+RN + ++P+++ L RLR L + L EL P+ S+
Sbjct: 118 ELPDTXQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176
Query: 237 LTELTFFNIYSNRING----SIPLEIGNFNFLQVLDLSYNKLE--GPI------------ 278
N+ S R+ S+P I N L+ L + + L GP
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236
Query: 279 ---------PSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSS 329
P L L L + S +P + L +L LDL G + +PS
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
Query: 330 MGHL 333
+ L
Sbjct: 297 IAQL 300
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 106/268 (39%), Gaps = 32/268 (11%)
Query: 201 EIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGN 260
E G S P+ + + + EL +P+S+ T + N+ N I +
Sbjct: 1 ETGTSCPAACSCSNQASRVICTRREL-AEVPASIPVNTR--YLNLQENSIQVIRTDTFKH 57
Query: 261 FNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGN 320
L++L LS N + L +L +L L +N T +L++L L L N
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLR-N 116
Query: 321 NLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIAS 380
N + IPS NR+ L++G L+ + S EG
Sbjct: 117 NPIESIPSYAF------------NRVPSLRRLDLGELKRLEYI--SEAAFEG-------- 154
Query: 381 LVNLTSLFL--CNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMH 438
LVNL L L CN IP+ L L RL L+LSGN L P S LT L +
Sbjct: 155 LVNLRYLNLGMCNLKD---IPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLM 210
Query: 439 SNRINGSIPLEIGNLKHVEDVYLFNNKL 466
++ +LK +E++ L +N L
Sbjct: 211 HAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 97/239 (40%), Gaps = 34/239 (14%)
Query: 253 SIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRL 312
++P EI L LDL N + L +L +L L NN + L +L
Sbjct: 47 AVPKEISPDTTL--LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104
Query: 313 TSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRIN------------------GSIPL-- 352
L +S N+LV IP ++ + L +H NRI G PL
Sbjct: 105 QKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161
Query: 353 ---EIGNFNFLQV--LDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNR 407
E G F+ L++ L +S KL G IP + +N L L +N L ++
Sbjct: 162 SGFEPGAFDGLKLNYLRISEAKLTG-IPKDLPETLN--ELHLDHNKIQAIELEDLLRYSK 218
Query: 408 LTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKL 466
L L L N + S+ L L + +N+++ +P + +LK ++ VYL N +
Sbjct: 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 78/188 (41%), Gaps = 30/188 (15%)
Query: 205 SIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFL 264
SIPS G + ++SLDLS N + S L L + SN IN + L
Sbjct: 45 SIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102
Query: 265 QVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGN--NL 322
+ LDLSYN +L N S + F P L+ LT L+L GN
Sbjct: 103 EHLDLSYN-------------------YLSNLSSSWFKP-----LSSLTFLNLLGNPYKT 138
Query: 323 VGPIPSSMGHLARLTTFDMHSNRINGSIPL-EIGNFNFLQVLDLSYNKLEGPIPSTIASL 381
+G S HL +L + + I + FL+ L++ + L+ P ++ S+
Sbjct: 139 LGE-TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197
Query: 382 VNLTSLFL 389
N++ L L
Sbjct: 198 QNVSHLIL 205
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 66/162 (40%), Gaps = 4/162 (2%)
Query: 302 IPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQ 361
IPS G + SLDLS N + S + L + SN IN + L+
Sbjct: 46 IPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103
Query: 362 VLDLSYNKLEGPIPSTIASLVNLTSL-FLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVG 420
LDLSYN L S L +LT L L N +T S HL +L L + +
Sbjct: 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT 163
Query: 421 PIP-SSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYL 461
I LT L ++ ++ + P + ++++V + L
Sbjct: 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Query: 363 LDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPI 422
LDL N L+ L +LT L+L N L LT L+LS N L +
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS-L 91
Query: 423 PSSV-GHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKL 466
P+ V LTQL +++N++ L ++D+ L+ N+L
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 164 HLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSL 223
LT LT L + N++ S L L L+LS N++ L +L+ L L+
Sbjct: 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109
Query: 224 NELVGPIPSSLGHLTELTFFNIYSNRINGSIP 255
N+L LT+L +Y N++ S+P
Sbjct: 110 NQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVP 140
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 60/127 (47%), Gaps = 12/127 (9%)
Query: 201 EIGGSIP------STLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSI 254
E+ G IP +TL LK + L LS N + SSL + L ++ N I
Sbjct: 29 ELHGMIPPIEKMDATLSTLKACKHLALSTNNI--EKISSLSGMENLRILSLGRNLIKKIE 86
Query: 255 PLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIP-STLGHLNRLT 313
L+ + L+ L +SYN++ S I LVNL L++ NN T + L L++L
Sbjct: 87 NLD-AVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143
Query: 314 SLDLSGN 320
L L+GN
Sbjct: 144 DLLLAGN 150
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 12/124 (9%)
Query: 300 GFIP------STLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLE 353
G IP +TL L L LS NN+ SS+ + L + N I L+
Sbjct: 32 GMIPPIEKMDATLSTLKACKHLALSTNNI--EKISSLSGMENLRILSLGRNLIKKIENLD 89
Query: 354 IGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIP-STLGHLNRLTSLD 412
+ L+ L +SYN++ S I LVNL L++ NN T + L L++L L
Sbjct: 90 -AVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146
Query: 413 LSGN 416
L+GN
Sbjct: 147 LAGN 150
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 20/164 (12%)
Query: 164 HLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIP------STLGHLKRLR 217
H+ + TT I +I + E + + + E+ G IP +TL LK +
Sbjct: 1 HMAKATT-------IKDAIRI-FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACK 52
Query: 218 SLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGP 277
L LS N + SSL + L ++ N I L+ + L+ L +SYN++
Sbjct: 53 HLALSTNNI--EKISSLSGMENLRILSLGRNLIKKIENLD-AVADTLEELWISYNQIASL 109
Query: 278 IPSTIANLVNLTSLFLCNNSQTGFIP-STLGHLNRLTSLDLSGN 320
S I LVNL L++ NN T + L L++L L L+GN
Sbjct: 110 --SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 151
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 12/124 (9%)
Query: 300 GFIP------STLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLE 353
G IP +TL L L LS NN+ SS+ + L + N I L+
Sbjct: 33 GMIPPIEKMDATLSTLKACKHLALSTNNI--EKISSLSGMENLRILSLGRNLIKKIENLD 90
Query: 354 IGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIP-STLGHLNRLTSLD 412
+ L+ L +SYN++ S I LVNL L++ NN T + L L++L L
Sbjct: 91 -AVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 147
Query: 413 LSGN 416
L+GN
Sbjct: 148 LAGN 151
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 160 STLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSL 219
+ L LT+L TL++ NQI +PL L LQ L LS+N I S L L+ L++L
Sbjct: 148 TVLSRLTKLDTLSLEDNQIRRIVPL--ARLTKLQNLYLSKNHI-----SDLRALRGLKNL 200
Query: 220 DL 221
D+
Sbjct: 201 DV 202
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 402 LGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYL 461
L HL +L SL L GNN + I + + LT+L T + N+I +PL L ++++YL
Sbjct: 128 LVHLPQLESLYL-GNNKITDI-TVLSRLTKLDTLSLEDNQIRRIVPL--ARLTKLQNLYL 183
Query: 462 FNNKL 466
N +
Sbjct: 184 SKNHI 188
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 78/188 (41%), Gaps = 30/188 (15%)
Query: 205 SIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFL 264
SIPS G + ++SLDLS N + S L L + SN IN + L
Sbjct: 19 SIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 76
Query: 265 QVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGN--NL 322
+ LDLSYN +L N S + F P L+ LT L+L GN
Sbjct: 77 EHLDLSYN-------------------YLSNLSSSWFKP-----LSSLTFLNLLGNPYKT 112
Query: 323 VGPIPSSMGHLARLTTFDMHSNRINGSIPL-EIGNFNFLQVLDLSYNKLEGPIPSTIASL 381
+G S HL +L + + I + FL+ L++ + L+ P ++ S+
Sbjct: 113 LGE-TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 171
Query: 382 VNLTSLFL 389
N++ L L
Sbjct: 172 QNVSHLIL 179
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 76/337 (22%), Positives = 126/337 (37%), Gaps = 82/337 (24%)
Query: 157 NIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRL 216
+IPS L + +L +++N+I +++ LQ L L+ N I + L L
Sbjct: 19 SIPSGLTEAVK--SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 76
Query: 217 RSLDLSLNELVGPIPSSLGHLTELTFFNIYSN------------RINGSIPLEIGNFN-- 262
LDLS N L S L+ LTF N+ N + L +GN +
Sbjct: 77 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 136
Query: 263 ------------FLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLN 310
FL+ L++ + L+ P ++ ++ N++ L L + + +
Sbjct: 137 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS 196
Query: 311 RLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHS------------------------NRI 346
+ L+L +L H + L+T + +S N+I
Sbjct: 197 SVECLELRDTDL------DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI 250
Query: 347 NGSIPLE--------IGNFNFL---QVLD------LSYNKLEGPI------PSTIASLVN 383
+G + LE +GNF +V+D L+ +L P ST+ SL
Sbjct: 251 SGLLELEFDDCTLNGVGNFRASDNDRVIDPGKVETLTIRRLHIPRFYLFYDLSTLYSLTE 310
Query: 384 LTSLFLCNNSQTGFIPSTLG-HLNRLTSLDLSGNNLV 419
NS+ +P L HL L LDLS N +V
Sbjct: 311 RVKRITVENSKVFLVPCLLSQHLKSLEYLDLSENLMV 347
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 66/162 (40%), Gaps = 4/162 (2%)
Query: 302 IPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQ 361
IPS G + SLDLS N + S + L + SN IN + L+
Sbjct: 20 IPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 77
Query: 362 VLDLSYNKLEGPIPSTIASLVNLTSL-FLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVG 420
LDLSYN L S L +LT L L N +T S HL +L L + +
Sbjct: 78 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT 137
Query: 421 PIP-SSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYL 461
I LT L ++ ++ + P + ++++V + L
Sbjct: 138 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 179
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 160 STLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSL 219
+ L LT+L TL++ NQI+ +PL L LQ L LS+N I S L L L++L
Sbjct: 150 TVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSKNHI-----SDLRALAGLKNL 202
Query: 220 DL 221
D+
Sbjct: 203 DV 204
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 402 LGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYL 461
L HL +L SL L GNN + I + + LT+L T + N+I+ +PL L ++++YL
Sbjct: 130 LVHLPQLESLYL-GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYL 185
Query: 462 FNNKL 466
N +
Sbjct: 186 SKNHI 190
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 54/136 (39%), Gaps = 36/136 (26%)
Query: 329 SMGHLARLTTFDMHSNRINGSIPLE--------IGNFNFLQVLDLSYNKLEGPIPSTIAS 380
S LA LT+ D H++ I +E I N + LDLS N
Sbjct: 37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQN------------ 84
Query: 381 LVNLTSLFLCNNSQTGFIPSTLGHL-------NRLTSLDLSGNNLVGPIPSS-------- 425
NLT L +N T + L L N+LT LD+S N L+ + +
Sbjct: 85 -TNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEID 143
Query: 426 VGHLTQLTTFDMHSNR 441
V H TQLT D H N+
Sbjct: 144 VSHNTQLTELDCHLNK 159
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 160 STLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSL 219
+ L LT+L TL++ NQI+ +PL L LQ L LS+N I S L L L++L
Sbjct: 147 TVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSKNHI-----SDLRALAGLKNL 199
Query: 220 DL 221
D+
Sbjct: 200 DV 201
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 402 LGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYL 461
L HL +L SL L GNN + I + + LT+L T + N+I+ +PL L ++++YL
Sbjct: 127 LVHLPQLESLYL-GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYL 182
Query: 462 FNNKL 466
N +
Sbjct: 183 SKNHI 187
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 25/153 (16%)
Query: 222 SLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPST 281
S+N + GP+ ELT + N + + L N+ L +DLSYN+LE +
Sbjct: 222 SINVVRGPVN------VELTILKLQHNNLTDTAWL--LNYPGLVEVDLSYNELEKIMYHP 273
Query: 282 IANLVNLTSLFLCNNSQTGF------IPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLAR 335
+ L L++ NN IP+ L LDLS N+L+ + + R
Sbjct: 274 FVKMQRLERLYISNNRLVALNLYGQPIPT-------LKVLDLSHNHLLH-VERNQPQFDR 325
Query: 336 LTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYN 368
L + N I + L++ + L+ L LS+N
Sbjct: 326 LENLYLDHNSI---VTLKLSTHHTLKNLTLSHN 355
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 160 STLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSL 219
+ L LT+L TL++ NQI+ +PL L LQ L LS+N I S L L L++L
Sbjct: 150 TVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSKNHI-----SDLRALAGLKNL 202
Query: 220 DL 221
D+
Sbjct: 203 DV 204
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 402 LGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYL 461
L HL +L SL L GNN + I + + LT+L T + N+I+ +PL L ++++YL
Sbjct: 130 LVHLPQLESLYL-GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYL 185
Query: 462 FNNKL 466
N +
Sbjct: 186 SKNHI 190
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 160 STLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSL 219
+ L LT+L TL++ NQI+ +PL L LQ L LS+N I S L L L++L
Sbjct: 170 TVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSKNHI-----SDLRALAGLKNL 222
Query: 220 DL 221
D+
Sbjct: 223 DV 224
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 89/196 (45%), Gaps = 21/196 (10%)
Query: 282 IANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDM 341
I L NLTSL L NN T P + +L +T L L+GN L P + +L L +
Sbjct: 62 IQYLPNLTSLNLSNNQITDISP--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFL 117
Query: 342 HSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVN---LTSLFLCNNSQTGFI 398
N++ L+ L+ +N + S I LV+ L SL+L NN T
Sbjct: 118 DENKVKDLSSLKDLKKLKSLSLE--HNGI-----SDINGLVHLPQLESLYLGNNKITDI- 169
Query: 399 PSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVED 458
+ L L +L +L L N + +P + LT+L + N I+ L LK+++
Sbjct: 170 -TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRAL--AGLKNLDV 224
Query: 459 VYLFNNK-LDGPIPPQ 473
+ LF+ + L+ PI Q
Sbjct: 225 LELFSQECLNKPINHQ 240
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 160 STLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSL 219
+ L LT+L TL++ NQI+ +PL L LQ L LS+N I S L L L++L
Sbjct: 148 TVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSKNHI-----SDLRALAGLKNL 200
Query: 220 DL 221
D+
Sbjct: 201 DV 202
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 402 LGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYL 461
L HL +L SL L GNN + I + + LT+L T + N+I+ +PL L ++++YL
Sbjct: 128 LVHLPQLESLYL-GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYL 183
Query: 462 FNNKL 466
N +
Sbjct: 184 SKNHI 188
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 160 STLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSL 219
+ L LT+L TL++ NQI+ +PL L LQ L LS+N I S L L L++L
Sbjct: 168 TVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSKNHI-----SDLRALAGLKNL 220
Query: 220 DL 221
D+
Sbjct: 221 DV 222
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 402 LGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYL 461
L HL +L SL L GNN + I + + LT+L T + N+I+ +PL L ++++YL
Sbjct: 148 LVHLPQLESLYL-GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYL 203
Query: 462 FNNKL 466
N +
Sbjct: 204 SKNHI 208
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 160 STLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSL 219
+ L LT+L TL++ NQI+ +PL L LQ L LS+N I S L L L++L
Sbjct: 168 TVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSKNHI-----SDLRALAGLKNL 220
Query: 220 DL 221
D+
Sbjct: 221 DV 222
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 402 LGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYL 461
L HL +L SL L GNN + I + + LT+L T + N+I+ +PL L ++++YL
Sbjct: 148 LVHLPQLESLYL-GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYL 203
Query: 462 FNNKL 466
N +
Sbjct: 204 SKNHI 208
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 160 STLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSL 219
+ L LT+L TL++ NQI+ +PL L LQ L LS+N I S L L L++L
Sbjct: 168 TVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSKNHI-----SDLRALAGLKNL 220
Query: 220 DL 221
D+
Sbjct: 221 DV 222
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 402 LGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYL 461
L HL +L SL L GNN + I + + LT+L T + N+I+ +PL L ++++YL
Sbjct: 148 LVHLPQLESLYL-GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYL 203
Query: 462 FNNKL 466
N +
Sbjct: 204 SKNHI 208
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 407 RLTSLDLSGNNLVGPIPSSVGHLTQLT--TFDMHSNRINGSI 446
R+T L L+G G +P ++G LT+L +F HS ++G +
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRL 365
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 311 RLTSLDLSGNNLVGPIPSSMGHLARLT--TFDMHSNRINGSI 350
R+T L L+G G +P ++G L L +F HS ++G +
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRL 365
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 160 STLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSL 219
+ L LT+L TL++ NQI+ +PL L LQ L LS+N I S L L L++L
Sbjct: 145 TVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSKNHI-----SDLRALAGLKNL 197
Query: 220 DL 221
D+
Sbjct: 198 DV 199
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 402 LGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYL 461
L HL +L SL L GNN + I + + LT+L T + N+I+ +PL L ++++YL
Sbjct: 125 LVHLPQLESLYL-GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYL 180
Query: 462 FNN 464
N
Sbjct: 181 SKN 183
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
Query: 363 LDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPI 422
L+L NKL+ L LT L L N L +LT L L N L +
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS-L 91
Query: 423 PSSV-GHLTQLTTFDMHSNRINGSIPLEI-GNLKHVEDVYLFNNKLDGPIP 471
P+ V LTQL + +N++ S+P I L ++ ++L N D P
Sbjct: 92 PNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 100/242 (41%), Gaps = 45/242 (18%)
Query: 156 GNIPSTLGHLT-RLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNE------------- 201
++P + H T +LTTL++++N + + LQ L LS N
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF 189
Query: 202 ---IGGSIPSTLGHLKRLRSLDLS---LNELVGPIPSSLGHLTELTFFNIYSNRINGSIP 255
+ ++ STL + LD S +N + GP+ ELT + N + +
Sbjct: 190 HANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN------VELTILKLQHNNLTDTAW 243
Query: 256 LEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGF------IPSTLGHL 309
L N+ L +DLSYN+LE + + L L++ NN IP+
Sbjct: 244 L--LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT----- 296
Query: 310 NRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNK 369
L LDLS N+L+ + + RL + N I + L++ + L+ L LS+N
Sbjct: 297 --LKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSI---VTLKLSTHHTLKNLTLSHND 350
Query: 370 LE 371
+
Sbjct: 351 WD 352
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 160 STLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSL 219
+ L LT+L TL++ NQI+ +PL L LQ L LS+N I S L L L++L
Sbjct: 145 TVLSRLTKLDTLSLEDNQISDIVPLAC--LTKLQNLYLSKNHI-----SDLRALCGLKNL 197
Query: 220 DL 221
D+
Sbjct: 198 DV 199
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 402 LGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYL 461
L HL +L SL L GNN + I + + LT+L T + N+I+ +PL L ++++YL
Sbjct: 125 LVHLPQLESLYL-GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPL--ACLTKLQNLYL 180
Query: 462 FNNKL 466
N +
Sbjct: 181 SKNHI 185
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 114/310 (36%), Gaps = 71/310 (22%)
Query: 219 LDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIP-LEIGNFNF-----LQVLDLSYN 272
+DLSLN + +S L +L F ++ P L I N F L +L L YN
Sbjct: 35 VDLSLNSIAELNETSFSRLQDLQFL-----KVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 273 K---LEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSS 329
+ LE + +ANL LT L CN + L L L L NN+ P+S
Sbjct: 90 QFLQLETGAFNGLANLEVLT-LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148
Query: 330 MG-HLARLTTFDMHSNRINGSIPLEIGNFN------------FLQVLD---LSYNKLEGP 373
++ R D+ N++ ++ NF LQ ++ L + K P
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208
Query: 374 IPSTIASLVNLT----------------------SLFLCNNSQTGFIPSTLGHLNR---- 407
+T + ++L+ SL L N+ G S+ GH N
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG---SSFGHTNFKDPD 265
Query: 408 -----------LTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHV 456
+ + DLS + + + S H T L + N IN L H+
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325
Query: 457 EDVYLFNNKL 466
+++ L N+L
Sbjct: 326 KELALDTNQL 335
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 7/122 (5%)
Query: 156 GNIPST--LGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHL 213
GNI T L L RL L ++ ++S +L + +DLS N + S L HL
Sbjct: 464 GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523
Query: 214 KRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNK 273
K + L+L+ N + +PS L L++ N+ N ++ + N FL+ + K
Sbjct: 524 KGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCT----CSNIYFLEWYKENMQK 578
Query: 274 LE 275
LE
Sbjct: 579 LE 580
>pdb|3REZ|A Chain A, Glycoprotein Gpib Variant
pdb|3REZ|B Chain B, Glycoprotein Gpib Variant
pdb|3REZ|C Chain C, Glycoprotein Gpib Variant
pdb|3REZ|D Chain D, Glycoprotein Gpib Variant
Length = 129
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 407 RLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSN 440
R T L L+GNNL P + HL QL T + +N
Sbjct: 31 RTTELVLTGNNLTSVPPGAFDHLPQLRTAHLGAN 64
Score = 28.9 bits (63), Expect = 8.4, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 311 RLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSN 344
R T L L+GNNL P + HL +L T + +N
Sbjct: 31 RTTELVLTGNNLTSVPPGAFDHLPQLRTAHLGAN 64
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|E Chain E, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|F Chain F, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 511
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 189 LNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTEL-TFFNIYS 247
L L + + R+E G + + ++ R ++ L+G IPS++G+ L T +
Sbjct: 267 LTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQ 326
Query: 248 NRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPS 304
RI + + G+ +Q + + + L P P+T ++ T++ S+ G P+
Sbjct: 327 ERITTT---KKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPA 380
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|E Chain E, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|F Chain F, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|M Chain M, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|N Chain N, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|O Chain O, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|V Chain V, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|W Chain W, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|X Chain X, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3OE7|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OFN|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 484
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 189 LNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTEL-TFFNIYS 247
L L + + R+E G + + ++ R ++ L+G IPS++G+ L T +
Sbjct: 240 LTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQ 299
Query: 248 NRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPS 304
RI + + G+ +Q + + + L P P+T ++ T++ S+ G P+
Sbjct: 300 ERITTT---KKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPA 353
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|E Chain E, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|F Chain F, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|M Chain M, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|N Chain N, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|O Chain O, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|V Chain V, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|W Chain W, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|X Chain X, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2WPD|D Chain D, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|E Chain E, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|F Chain F, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3ZRY|D Chain D, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|E Chain E, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|F Chain F, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|D Chain D, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|E Chain E, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|F Chain F, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|N Chain N, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|O Chain O, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|P Chain P, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 478
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 189 LNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTEL-TFFNIYS 247
L L + + R+E G + + ++ R ++ L+G IPS++G+ L T +
Sbjct: 234 LTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQ 293
Query: 248 NRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPS 304
RI + + G+ +Q + + + L P P+T ++ T++ S+ G P+
Sbjct: 294 ERITTT---KKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPA 347
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|F Chain F, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|EE Chain e, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|FF Chain f, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 473
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 189 LNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTEL-TFFNIYS 247
L L + + R+E G + + ++ R ++ L+G IPS++G+ L T +
Sbjct: 229 LTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQ 288
Query: 248 NRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPS 304
RI + + G+ +Q + + + L P P+T ++ T++ S+ G P+
Sbjct: 289 ERITTT---KKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPA 342
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|DD Chain d, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 470
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 189 LNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTEL-TFFNIYS 247
L L + + R+E G + + ++ R ++ L+G IPS++G+ L T +
Sbjct: 229 LTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQ 288
Query: 248 NRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPS 304
RI + + G+ +Q + + + L P P+T ++ T++ S+ G P+
Sbjct: 289 ERITTT---KKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPA 342
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
Length = 484
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Query: 189 LNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTEL-TFFNIYS 247
L L + + R+E G + + ++ R ++ L+G IPS+ G+ L T +
Sbjct: 240 LTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAFGYQPTLATDMGLLQ 299
Query: 248 NRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPS 304
RI + + G+ +Q + + + L P P+T ++ T++ S+ G P+
Sbjct: 300 ERITTT---KKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPA 353
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Query: 189 LNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTEL-TFFNIYS 247
L L V + R++ G + + ++ R ++ L+G IPS++G+ L T
Sbjct: 238 LTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQ 297
Query: 248 NRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPS 304
RI + + G+ +Q + + + L P P+T ++ T++ ++ G P+
Sbjct: 298 ERITTT---KKGSITSVQAIXVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPA 351
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.137 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,962,395
Number of Sequences: 62578
Number of extensions: 599542
Number of successful extensions: 2313
Number of sequences better than 100.0: 132
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 1292
Number of HSP's gapped (non-prelim): 596
length of query: 560
length of database: 14,973,337
effective HSP length: 104
effective length of query: 456
effective length of database: 8,465,225
effective search space: 3860142600
effective search space used: 3860142600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)