Query 038187
Match_columns 560
No_of_seqs 500 out of 4714
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 08:28:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038187.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038187hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.8E-63 8.2E-68 563.1 36.4 510 44-560 29-584 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.2E-55 4.8E-60 499.6 31.3 431 114-545 160-590 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.6E-38 5.6E-43 308.4 6.4 387 120-508 54-445 (873)
4 KOG4194 Membrane glycoprotein 100.0 5E-38 1.1E-42 306.4 6.5 369 118-488 78-449 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 6.2E-40 1.3E-44 306.6 -16.7 409 114-539 64-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 6.7E-39 1.5E-43 299.7 -14.3 386 115-515 111-541 (565)
7 KOG0444 Cytoskeletal regulator 100.0 1.4E-35 3.1E-40 291.2 -5.9 366 115-513 4-373 (1255)
8 KOG0444 Cytoskeletal regulator 100.0 1.3E-34 2.9E-39 284.4 -4.5 371 140-545 5-380 (1255)
9 KOG0618 Serine/threonine phosp 100.0 2.8E-34 6.1E-39 294.5 -6.2 418 117-558 44-487 (1081)
10 KOG0618 Serine/threonine phosp 100.0 3.5E-32 7.6E-37 279.2 -7.8 415 119-560 22-465 (1081)
11 PLN03210 Resistant to P. syrin 99.9 1.8E-25 4E-30 255.0 27.9 306 216-536 591-903 (1153)
12 PLN03210 Resistant to P. syrin 99.9 3.5E-25 7.5E-30 252.8 27.1 339 135-488 551-903 (1153)
13 KOG4237 Extracellular matrix p 99.9 7.6E-26 1.7E-30 212.1 -4.7 400 119-536 68-498 (498)
14 KOG4237 Extracellular matrix p 99.9 6.6E-25 1.4E-29 205.9 -6.4 395 143-557 68-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.9 9.6E-22 2.1E-26 209.0 16.0 265 214-522 201-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.9 1.7E-20 3.6E-25 199.6 19.4 264 193-500 204-467 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 1.2E-19 2.6E-24 194.4 13.0 246 191-491 179-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.3E-19 2.8E-24 194.1 12.9 243 263-540 200-446 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 5E-21 1.1E-25 190.4 1.3 209 330-538 77-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.8 9.9E-21 2.1E-25 188.3 1.2 252 308-559 21-319 (319)
21 KOG0617 Ras suppressor protein 99.7 1.6E-19 3.5E-24 151.0 -6.2 173 106-284 21-194 (264)
22 KOG0617 Ras suppressor protein 99.7 1E-18 2.3E-23 146.1 -5.0 181 356-542 31-215 (264)
23 PLN03150 hypothetical protein; 99.5 1.2E-13 2.6E-18 147.9 10.9 106 120-225 420-526 (623)
24 KOG0532 Leucine-rich repeat (L 99.3 8.2E-14 1.8E-18 137.7 -5.3 174 357-539 74-247 (722)
25 COG4886 Leucine-rich repeat (L 99.2 1E-11 2.2E-16 127.2 7.1 199 314-521 97-296 (394)
26 KOG0532 Leucine-rich repeat (L 99.2 3.4E-13 7.4E-18 133.4 -3.6 195 333-537 74-271 (722)
27 COG4886 Leucine-rich repeat (L 99.2 1.9E-11 4E-16 125.3 6.4 202 289-499 96-298 (394)
28 PLN03150 hypothetical protein; 99.2 4.7E-11 1E-15 128.1 8.5 112 432-543 420-532 (623)
29 KOG1909 Ran GTPase-activating 99.2 2.1E-12 4.6E-17 120.8 -1.7 233 282-514 26-310 (382)
30 KOG1909 Ran GTPase-activating 99.2 5.4E-12 1.2E-16 118.1 0.3 233 257-490 25-310 (382)
31 KOG4658 Apoptotic ATPase [Sign 99.2 1.9E-11 4E-16 133.9 4.1 275 114-395 519-807 (889)
32 KOG4658 Apoptotic ATPase [Sign 99.1 4.2E-11 9.1E-16 131.1 3.5 268 115-387 542-824 (889)
33 KOG1259 Nischarin, modulator o 99.1 3.2E-11 6.8E-16 110.5 2.0 130 405-540 283-413 (490)
34 KOG3207 Beta-tubulin folding c 99.1 2.7E-11 5.9E-16 116.5 0.7 209 331-540 118-340 (505)
35 KOG3207 Beta-tubulin folding c 99.1 2E-11 4.3E-16 117.5 -0.6 210 307-517 118-341 (505)
36 PF14580 LRR_9: Leucine-rich r 99.0 1.2E-10 2.5E-15 102.5 3.2 109 114-227 15-126 (175)
37 KOG1259 Nischarin, modulator o 99.0 6.2E-11 1.3E-15 108.6 1.0 129 382-516 284-413 (490)
38 PF14580 LRR_9: Leucine-rich r 99.0 2.6E-10 5.6E-15 100.3 3.9 104 383-491 20-126 (175)
39 KOG0531 Protein phosphatase 1, 98.8 4.4E-10 9.6E-15 115.3 -1.6 245 261-543 71-322 (414)
40 PF13855 LRR_8: Leucine rich r 98.7 6E-09 1.3E-13 75.3 3.0 61 478-538 1-61 (61)
41 KOG0531 Protein phosphatase 1, 98.7 1.2E-09 2.6E-14 112.2 -2.2 247 235-495 69-322 (414)
42 PF13855 LRR_8: Leucine rich r 98.7 1.2E-08 2.5E-13 73.8 2.9 59 119-177 2-60 (61)
43 KOG1859 Leucine-rich repeat pr 98.4 5.7E-09 1.2E-13 106.7 -7.3 126 359-491 165-292 (1096)
44 KOG1859 Leucine-rich repeat pr 98.3 1.2E-08 2.6E-13 104.4 -6.5 197 333-539 83-292 (1096)
45 KOG2120 SCF ubiquitin ligase, 98.3 2.7E-09 5.8E-14 98.0 -10.3 85 119-203 186-273 (419)
46 KOG2120 SCF ubiquitin ligase, 98.3 1.6E-08 3.5E-13 93.0 -5.5 177 334-512 185-373 (419)
47 KOG4579 Leucine-rich repeat (L 98.3 7E-08 1.5E-12 78.7 -2.0 112 431-546 54-166 (177)
48 KOG4579 Leucine-rich repeat (L 98.3 6.1E-08 1.3E-12 79.0 -2.4 140 383-526 28-170 (177)
49 KOG2982 Uncharacterized conser 98.2 2.4E-07 5.2E-12 85.4 0.3 64 357-420 198-263 (418)
50 COG5238 RNA1 Ran GTPase-activa 98.2 1.1E-07 2.4E-12 86.5 -2.6 241 114-371 26-316 (388)
51 COG5238 RNA1 Ran GTPase-activa 98.2 1.9E-07 4E-12 85.0 -1.3 215 282-517 26-287 (388)
52 KOG2982 Uncharacterized conser 98.0 1.2E-06 2.6E-11 80.9 0.1 62 165-226 70-133 (418)
53 PRK15386 type III secretion pr 97.9 2.7E-05 5.9E-10 77.3 8.0 75 331-417 49-123 (426)
54 PF12799 LRR_4: Leucine Rich r 97.9 9.7E-06 2.1E-10 53.5 2.6 36 479-515 2-37 (44)
55 PRK15386 type III secretion pr 97.9 3.4E-05 7.5E-10 76.6 7.6 136 377-536 47-187 (426)
56 KOG3665 ZYG-1-like serine/thre 97.7 9.6E-06 2.1E-10 87.3 1.5 136 382-519 122-267 (699)
57 PF12799 LRR_4: Leucine Rich r 97.7 2.7E-05 5.9E-10 51.4 3.0 36 503-539 2-37 (44)
58 KOG3665 ZYG-1-like serine/thre 97.7 6.6E-06 1.4E-10 88.5 0.1 134 118-253 122-265 (699)
59 PF08263 LRRNT_2: Leucine rich 97.7 2.1E-05 4.5E-10 51.8 1.6 36 43-78 2-43 (43)
60 KOG4341 F-box protein containi 97.5 1.6E-06 3.5E-11 83.8 -7.1 83 166-248 138-226 (483)
61 KOG1644 U2-associated snRNP A' 97.4 0.00029 6.3E-09 61.9 5.6 103 143-247 43-149 (233)
62 KOG1644 U2-associated snRNP A' 97.4 0.00023 5E-09 62.6 5.0 107 118-226 42-152 (233)
63 PF13306 LRR_5: Leucine rich r 97.4 0.00058 1.3E-08 57.6 7.4 83 114-199 8-90 (129)
64 PF13306 LRR_5: Leucine rich r 97.4 0.00056 1.2E-08 57.7 7.0 106 136-246 6-111 (129)
65 KOG4341 F-box protein containi 97.3 4.3E-06 9.2E-11 81.0 -7.8 107 142-248 138-252 (483)
66 KOG2739 Leucine-rich acidic nu 97.1 0.00019 4.1E-09 65.8 1.5 88 138-227 39-129 (260)
67 KOG1947 Leucine rich repeat pr 96.9 7.3E-05 1.6E-09 78.8 -3.8 35 480-514 403-439 (482)
68 KOG2739 Leucine-rich acidic nu 96.8 0.00067 1.5E-08 62.3 2.5 40 404-443 63-104 (260)
69 KOG1947 Leucine rich repeat pr 96.8 0.00017 3.7E-09 76.0 -2.0 235 285-539 187-440 (482)
70 KOG2123 Uncharacterized conser 96.7 0.00012 2.6E-09 67.4 -3.3 63 453-517 40-103 (388)
71 PF00560 LRR_1: Leucine Rich R 96.5 0.00095 2.1E-08 36.6 0.5 22 527-549 1-22 (22)
72 KOG2123 Uncharacterized conser 96.3 0.00032 7E-09 64.6 -3.1 100 405-508 18-123 (388)
73 KOG4308 LRR-containing protein 95.7 9.2E-05 2E-09 76.4 -11.0 182 335-516 88-304 (478)
74 PF00560 LRR_1: Leucine Rich R 95.0 0.0084 1.8E-07 32.8 0.5 18 480-498 2-19 (22)
75 KOG4308 LRR-containing protein 94.7 0.00026 5.6E-09 73.1 -11.1 202 312-513 89-329 (478)
76 KOG3864 Uncharacterized conser 92.7 0.026 5.6E-07 50.0 -0.6 82 431-512 102-186 (221)
77 PF13504 LRR_7: Leucine rich r 92.0 0.085 1.8E-06 26.7 1.0 13 527-539 2-14 (17)
78 KOG0473 Leucine-rich repeat pr 91.6 0.0084 1.8E-07 54.1 -5.0 87 450-539 38-124 (326)
79 KOG3864 Uncharacterized conser 90.7 0.034 7.5E-07 49.3 -2.0 81 455-535 102-185 (221)
80 PF13516 LRR_6: Leucine Rich r 89.9 0.12 2.7E-06 28.8 0.5 19 478-496 2-20 (24)
81 KOG0473 Leucine-rich repeat pr 88.2 0.021 4.6E-07 51.6 -5.2 84 429-515 41-124 (326)
82 smart00369 LRR_TYP Leucine-ric 87.1 0.56 1.2E-05 26.6 2.0 20 525-545 1-20 (26)
83 smart00370 LRR Leucine-rich re 87.1 0.56 1.2E-05 26.6 2.0 20 525-545 1-20 (26)
84 smart00364 LRR_BAC Leucine-ric 74.1 2.3 5E-05 24.2 1.4 17 527-544 3-19 (26)
85 KOG4242 Predicted myosin-I-bin 62.7 24 0.00052 36.1 6.7 107 165-273 164-279 (553)
86 smart00365 LRR_SD22 Leucine-ri 62.7 7 0.00015 22.3 1.9 15 525-539 1-15 (26)
87 smart00368 LRR_RI Leucine rich 62.1 4.6 0.0001 23.4 1.1 14 479-492 3-16 (28)
88 smart00367 LRR_CC Leucine-rich 50.9 10 0.00022 21.4 1.2 11 478-488 2-12 (26)
89 KOG3763 mRNA export factor TAP 36.2 21 0.00046 37.2 1.8 63 380-444 216-284 (585)
90 KOG3763 mRNA export factor TAP 35.4 24 0.00052 36.8 2.0 12 504-515 272-283 (585)
91 PF10907 DUF2749: Protein of u 29.6 60 0.0013 23.1 2.5 13 12-24 6-18 (66)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.8e-63 Score=563.10 Aligned_cols=510 Identities=35% Similarity=0.549 Sum_probs=328.3
Q ss_pred HHHHHHHcCCCCC--CCCC-CCCCCCCCCccccceecCCCCCeEEEeccccCCCCceeecCCCCccccccccc-------
Q 038187 44 LERKALLGTGWWV--NNGA-TSGNYTSNHCKWTGISCNSAGSVTGVSLLLYENDNIKGELGRFNFSCFPNLKK------- 113 (560)
Q Consensus 44 ~~~~~ll~~~~~~--~~~~-~~~~~~~~~C~w~gv~C~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~------- 113 (560)
.|+.||+.++... +.+. .+|+.+.|||.|.||+|+..++|+.++++ ++.+.|.+++ .+..++.++.
T Consensus 29 ~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~---~~~i~~~~~~-~~~~l~~L~~L~Ls~n~ 104 (968)
T PLN00113 29 EELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLS---GKNISGKISS-AIFRLPYIQTINLSNNQ 104 (968)
T ss_pred HHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEec---CCCccccCCh-HHhCCCCCCEEECCCCc
Confidence 6888888775433 2222 34555678999999999888899999998 6666665544 3322222110
Q ss_pred ---------cCCCCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcc
Q 038187 114 ---------MGRLRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPL 184 (560)
Q Consensus 114 ---------l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 184 (560)
+..+++|++|++++|.+++.+|. +.+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|.
T Consensus 105 ~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 182 (968)
T PLN00113 105 LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182 (968)
T ss_pred cCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh
Confidence 22445555555555555443332 2344455555555555555555555555555555555555555555
Q ss_pred cCCCCCCCCEEEcccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCC
Q 038187 185 EIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFL 264 (560)
Q Consensus 185 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 264 (560)
.+.++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|
T Consensus 183 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 262 (968)
T PLN00113 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL 262 (968)
T ss_pred hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCC
Confidence 55555555555555555554555555555555555555555554455555555555555555555444444444444445
Q ss_pred CEEECcCC------------------------CCcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCC
Q 038187 265 QVLDLSYN------------------------KLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGN 320 (560)
Q Consensus 265 ~~L~L~~n------------------------~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 320 (560)
++|++++| .+.+.+|..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|
T Consensus 263 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 342 (968)
T PLN00113 263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN 342 (968)
T ss_pred CEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCC
Confidence 55555444 444444444444455555555555554444444555555555555555
Q ss_pred cCcccCCccccCCCCCCEEEccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcc
Q 038187 321 NLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPS 400 (560)
Q Consensus 321 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~ 400 (560)
.+.+.+|..++.+++|+.|++++|++.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|.
T Consensus 343 ~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~ 422 (968)
T PLN00113 343 KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS 422 (968)
T ss_pred CCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh
Confidence 55555555555555555555555555555555555555555555555555556666666667777777777777766666
Q ss_pred cccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCC
Q 038187 401 TLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRL 480 (560)
Q Consensus 401 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L 480 (560)
.+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|++++.+|..+..+++|
T Consensus 423 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L 501 (968)
T PLN00113 423 EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL 501 (968)
T ss_pred hHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhcc
Confidence 67777777777777777777777666677777777777777777666654 34778888888888888888889999999
Q ss_pred CeeeCccCcccccChhhhhcCcCCCeeeCcCCcCccccCccCCCCCCCCEEeCCCCcCccccCccCCCCCCee---eecc
Q 038187 481 RALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLYGSIPESLRKVPSLC---VDGN 557 (560)
Q Consensus 481 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ip~~~~~l~~l~---l~~n 557 (560)
+.|++++|++++.+|..+.++++|+.|++++|.++|.+|..+..+++|+.||+++|+++|.+|..+.++++|. +++|
T Consensus 502 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N 581 (968)
T PLN00113 502 MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN 581 (968)
T ss_pred CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999877765554 8988
Q ss_pred cCC
Q 038187 558 NFE 560 (560)
Q Consensus 558 ~~~ 560 (560)
+++
T Consensus 582 ~l~ 584 (968)
T PLN00113 582 HLH 584 (968)
T ss_pred cce
Confidence 864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.2e-55 Score=499.57 Aligned_cols=431 Identities=37% Similarity=0.579 Sum_probs=410.2
Q ss_pred cCCCCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCC
Q 038187 114 MGRLRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQ 193 (560)
Q Consensus 114 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 193 (560)
++.+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|+
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239 (968)
T ss_pred HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence 67888999999999998888888899999999999999999888899999999999999999999888898999999999
Q ss_pred EEEcccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCC
Q 038187 194 VLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNK 273 (560)
Q Consensus 194 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~ 273 (560)
+|++++|.+++.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++|.
T Consensus 240 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN 319 (968)
T ss_pred EEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCc
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcC
Q 038187 274 LEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLE 353 (560)
Q Consensus 274 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 353 (560)
+.+..|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|.++..+++|+.|++++|.+.+.+|..
T Consensus 320 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~ 399 (968)
T PLN00113 320 FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS 399 (968)
T ss_pred cCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCC
Q 038187 354 IGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLT 433 (560)
Q Consensus 354 ~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 433 (560)
+..+++|+.|++++|.+++.+|..+..++.|+.|++++|.+++.++..+..+++|+.|++++|++.+.+|..+ ..++|+
T Consensus 400 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~ 478 (968)
T PLN00113 400 LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLE 478 (968)
T ss_pred HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccce
Confidence 9999999999999999999999999999999999999999999999888899999999999999998888766 458999
Q ss_pred EEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCc
Q 038187 434 TFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNF 513 (560)
Q Consensus 434 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 513 (560)
.|++++|++++.+|..+..+++|++|++++|++.+.+|..+..+++|++|+|++|.+++.+|..+..+++|+.|++++|+
T Consensus 479 ~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 558 (968)
T PLN00113 479 NLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ 558 (968)
T ss_pred EEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCccCCCCCCCCEEeCCCCcCccccCcc
Q 038187 514 INGKIPSQLGEIPSIDTVNLCTNNLYGSIPES 545 (560)
Q Consensus 514 l~~~~p~~l~~l~~L~~L~ls~n~l~~~ip~~ 545 (560)
++|.+|..+..+++|+.+++++|+++|.+|..
T Consensus 559 l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 559 LSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred ccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence 99999999999999999999999999999974
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-38 Score=308.40 Aligned_cols=387 Identities=25% Similarity=0.241 Sum_probs=205.5
Q ss_pred ccEEECcCCCCCCcCccccCCC--CCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEc
Q 038187 120 LVHLDLSDNYIEGYILPTLGHL--SKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDL 197 (560)
Q Consensus 120 L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 197 (560)
-+.||.+++.+.......+..+ +.-+.|++++|.++.+.+..|.++++|+.+++..|.++ .+|.......+|+.|+|
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL 132 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence 3567777777655322233222 23345777777777666666777777777777777765 55655555566777777
Q ss_pred ccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCCcCC
Q 038187 198 SRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGP 277 (560)
Q Consensus 198 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 277 (560)
.+|.++.+-.++++.++.|+.|||+.|.++...-..|..-.++++|++++|.|+......|..+.+|..|.|+.|+++..
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL 212 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL 212 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc
Confidence 77777666666666677777777777766644444555555666666666666655555555666666666666666644
Q ss_pred ccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCccCC
Q 038187 278 IPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNF 357 (560)
Q Consensus 278 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 357 (560)
.+..|.+++.|+.|+|..|.+.-.--..|..+++|+.|.+..|.+...-...|..+.++++|+++.|++...-..++..+
T Consensus 213 p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL 292 (873)
T KOG4194|consen 213 PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL 292 (873)
T ss_pred CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc
Confidence 44455555666666665555543322344555555555555555543333344445555555555555543333444444
Q ss_pred CCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEc
Q 038187 358 NFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDM 437 (560)
Q Consensus 358 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 437 (560)
.+|+.|++++|.+...-++.+.-++.|+.|+++.|+++..-+..|..+..|++|.|++|.++..-...|..+++|++|||
T Consensus 293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdL 372 (873)
T KOG4194|consen 293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDL 372 (873)
T ss_pred chhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcC
Confidence 55555555555444444444444444555555554444444444444444444444444444332333444444444444
Q ss_pred cCCcCcccCCc---cccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeee
Q 038187 438 HSNRINGSIPL---EIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLD 508 (560)
Q Consensus 438 ~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 508 (560)
++|.++..+.+ .|..++.|++|++.+|++....-..+.++.+|+.|||.+|.|...-|..|..+ .|+.|.
T Consensus 373 r~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv 445 (873)
T KOG4194|consen 373 RSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELV 445 (873)
T ss_pred cCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhh
Confidence 44444433322 13334444444444444443333334444444444444444444444444443 444443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=5e-38 Score=306.40 Aligned_cols=369 Identities=24% Similarity=0.244 Sum_probs=329.7
Q ss_pred CCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEc
Q 038187 118 RNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDL 197 (560)
Q Consensus 118 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 197 (560)
..-+.||+++|.+...-+..|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.+...-...+..++.|+.|||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 35578999999999999999999999999999999998 67877777788999999999998777778889999999999
Q ss_pred ccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCCcCC
Q 038187 198 SRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGP 277 (560)
Q Consensus 198 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 277 (560)
+.|.++.+--..|..-.++++|+|++|.++..-...|..+.+|..|.++.|+++...+..|+++++|+.|+|..|++...
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 99999965556677778999999999999988788999999999999999999976667788899999999999998744
Q ss_pred ccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCccCC
Q 038187 278 IPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNF 357 (560)
Q Consensus 278 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 357 (560)
---.|.++++|+.|.+..|++.......|..+.++++|+++.|+++..-..|+.++++|+.|+++.|.+...-++.+..+
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 34568899999999999999988877889999999999999999998878889999999999999999998888888899
Q ss_pred CCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCC---ccccCCCCCCE
Q 038187 358 NFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIP---SSVGHLTQLTT 434 (560)
Q Consensus 358 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~ 434 (560)
++|++|+|++|+++...+..+..+..|++|++++|.+...-...|..+++|++|||++|.++..+- ..|..+++|+.
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence 999999999999998888899999999999999999987766778889999999999999876543 35677999999
Q ss_pred EEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccC
Q 038187 435 FDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNN 488 (560)
Q Consensus 435 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n 488 (560)
|++.||++...-...|.++..|+.|+|.+|.|...-|..|..+ .|++|-++.-
T Consensus 397 L~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 397 LRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSS 449 (873)
T ss_pred eeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhccc
Confidence 9999999996666789999999999999999998888999988 8999987653
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=6.2e-40 Score=306.59 Aligned_cols=409 Identities=30% Similarity=0.471 Sum_probs=202.8
Q ss_pred cCCCCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCC
Q 038187 114 MGRLRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQ 193 (560)
Q Consensus 114 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 193 (560)
+.++..+.++++++|.+.. .|++++.+..++.++.+.|.++ .+|..++.+.+|+.+++++|.+. .+|..++.+..|+
T Consensus 64 l~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~ 140 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLE 140 (565)
T ss_pred hhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhh
Confidence 4444455555555554443 2444445555555555555444 34444455555555555555444 3344444444444
Q ss_pred EEEcccCCCCccCccccCC-----------------------CCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcC
Q 038187 194 VLDLSRNEIGGSIPSTLGH-----------------------LKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRI 250 (560)
Q Consensus 194 ~L~l~~n~~~~~~~~~l~~-----------------------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 250 (560)
.++..+|+++ ..|+++.+ +++|++|+...|.+. .+|+.++.+.+|..|++..|++
T Consensus 141 dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki 218 (565)
T KOG0472|consen 141 DLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKI 218 (565)
T ss_pred hhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccc
Confidence 4444444444 33444444 455555555544443 4444555555555555555555
Q ss_pred CccCcccccCCCCCCEEECcCCCCcCCccccc-cCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCcc
Q 038187 251 NGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTI-ANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSS 329 (560)
Q Consensus 251 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 329 (560)
. .+| +|..+..|++++++.|.+. .+|... ..++++..||+..|+++ ..|+.+..+++|++||+++|.++ ..|..
T Consensus 219 ~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~s 293 (565)
T KOG0472|consen 219 R-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYS 293 (565)
T ss_pred c-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcc
Confidence 4 333 4555555555555555544 333332 24555555555555554 34444555555555555555554 33444
Q ss_pred ccCCCCCCEEEccCCccccc-------------------------------------CCc----CccCCCCCCEEEeecC
Q 038187 330 MGHLARLTTFDMHSNRINGS-------------------------------------IPL----EIGNFNFLQVLDLSYN 368 (560)
Q Consensus 330 ~~~l~~L~~L~l~~n~l~~~-------------------------------------~~~----~~~~l~~L~~L~l~~n 368 (560)
++++ .|+.|-+.+|.+... .+. .....-+.+.|+++.-
T Consensus 294 Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~ 372 (565)
T KOG0472|consen 294 LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK 372 (565)
T ss_pred cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc
Confidence 5555 555555555543200 000 0001112333333333
Q ss_pred cCcCCCch-hccCC--CCCCEEeccCCcccccCcccccCCCCCCE-EECcCCcccccCCccccCCCCCCEEEccCCcCcc
Q 038187 369 KLEGPIPS-TIASL--VNLTSLFLCNNSQTGFIPSTLGHLNRLTS-LDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRING 444 (560)
Q Consensus 369 ~~~~~~~~-~l~~~--~~L~~L~l~~n~l~~~~~~~~~~~~~L~~-L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 444 (560)
+++ .+|. .|..- .-....++++|++. ++|..+..+..+.+ +.+++|.+ +.+|..++.+++|..|++++|-+.
T Consensus 373 qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln- 448 (565)
T KOG0472|consen 373 QLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN- 448 (565)
T ss_pred ccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-
Confidence 333 2222 11111 11334444444444 23333333333222 33333333 255555566666666666666655
Q ss_pred cCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCccccCccCCC
Q 038187 445 SIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFINGKIPSQLGE 524 (560)
Q Consensus 445 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 524 (560)
.+|..++.+..|+.|+++.|+|. .+|+++.....++.+-.++|++....|..+.++.+|..||+.+|.+. .+|..+++
T Consensus 449 ~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgn 526 (565)
T KOG0472|consen 449 DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGN 526 (565)
T ss_pred hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhcc
Confidence 55666666666666666666665 56666666666666666666666444444666666666666666665 56666666
Q ss_pred CCCCCEEeCCCCcCc
Q 038187 525 IPSIDTVNLCTNNLY 539 (560)
Q Consensus 525 l~~L~~L~ls~n~l~ 539 (560)
|.+|++|++++|+|+
T Consensus 527 mtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 527 MTNLRHLELDGNPFR 541 (565)
T ss_pred ccceeEEEecCCccC
Confidence 666666666666666
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=6.7e-39 Score=299.65 Aligned_cols=386 Identities=30% Similarity=0.459 Sum_probs=303.4
Q ss_pred CCCCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCE
Q 038187 115 GRLRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQV 194 (560)
Q Consensus 115 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 194 (560)
..+.+++.+++++|.+.. .++.++.+-.|+.++-.+|+++ ..|..+.++.+|..+++.+|.+....| ..-+++.|++
T Consensus 111 ~s~~~l~~l~~s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~-~~i~m~~L~~ 187 (565)
T KOG0472|consen 111 GSLISLVKLDCSSNELKE-LPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPE-NHIAMKRLKH 187 (565)
T ss_pred hhhhhhhhhhccccceee-cCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCH-HHHHHHHHHh
Confidence 344445555555554442 2444555555555555555554 455556666666666666666653333 3334788888
Q ss_pred EEcccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccc-cCCCCCCEEECcCCC
Q 038187 195 LDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEI-GNFNFLQVLDLSYNK 273 (560)
Q Consensus 195 L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~L~~n~ 273 (560)
|++..|.++ .+|..++.+.+|..|++..|++. ..| .|..|..|++++++.|++. .+|.+. ..+..+..||+.+|+
T Consensus 188 ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNk 263 (565)
T KOG0472|consen 188 LDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNK 263 (565)
T ss_pred cccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccc
Confidence 888888776 78899999999999999999998 556 7999999999999999998 555554 589999999999999
Q ss_pred CcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCccc----------------------------
Q 038187 274 LEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGP---------------------------- 325 (560)
Q Consensus 274 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~---------------------------- 325 (560)
+. ..|..++.+.+|++||+++|.+++ +|..++++ +|+.|.+.||.+...
T Consensus 264 lk-e~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~s 340 (565)
T KOG0472|consen 264 LK-EVPDEICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQS 340 (565)
T ss_pred cc-cCchHHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCC
Confidence 98 788889999999999999999985 56679999 999999999966210
Q ss_pred ---------CCc----cccCCCCCCEEEccCCcccccCCcCccCCCC---CCEEEeecCcCcCCCchhccCCCCCCEEec
Q 038187 326 ---------IPS----SMGHLARLTTFDMHSNRINGSIPLEIGNFNF---LQVLDLSYNKLEGPIPSTIASLVNLTSLFL 389 (560)
Q Consensus 326 ---------~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l 389 (560)
.+. ....+.+.+.|++++-+++ .+|........ ....+++.|++. ++|..+..++.+.+.-+
T Consensus 341 e~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~ 418 (565)
T KOG0472|consen 341 EGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLV 418 (565)
T ss_pred cccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHH
Confidence 000 0122346788888888888 56654433333 788999999998 77888777777665545
Q ss_pred cCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCccccc
Q 038187 390 CNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGP 469 (560)
Q Consensus 390 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 469 (560)
.+++..+.+|..++.+++|..|++++|.+. .+|..++.+..|+.|+++.|+|. .+|..+..+..++.+-.++|++...
T Consensus 419 lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~v 496 (565)
T KOG0472|consen 419 LSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSV 496 (565)
T ss_pred hhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccccccc
Confidence 555566688899999999999999999887 88999999999999999999998 8898888888899998999999977
Q ss_pred CchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCc
Q 038187 470 IPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFIN 515 (560)
Q Consensus 470 ~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 515 (560)
.|+.+.++.+|.+|||.+|.+. .+|..+++|++|++|++++|+|.
T Consensus 497 d~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 497 DPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 7777999999999999999999 79999999999999999999997
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=1.4e-35 Score=291.21 Aligned_cols=366 Identities=31% Similarity=0.431 Sum_probs=222.9
Q ss_pred CCCCCccEEECcCCCCC-CcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCC
Q 038187 115 GRLRNLVHLDLSDNYIE-GYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQ 193 (560)
Q Consensus 115 ~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 193 (560)
+-++.++-+|+++|.|+ +..|.....+++++.|.|....+. .+|..++.+.+|++|.+++|++. .+-..+..++.|+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence 44566778888888887 457777888888888888777765 57777888888888888888775 4455667777888
Q ss_pred EEEcccCCCCc-cCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCC
Q 038187 194 VLDLSRNEIGG-SIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYN 272 (560)
Q Consensus 194 ~L~l~~n~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n 272 (560)
.+.+++|++.. -+|..+..+..|..|||++|++. ..|..+.+.+++-.|++++|+|.......+-++..|-.|||++|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 88887777653 46667777777777777777777 55677777777777777777776333333456667777777777
Q ss_pred CCcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCc-ccCCccccCCCCCCEEEccCCcccccCC
Q 038187 273 KLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLV-GPIPSSMGHLARLTTFDMHSNRINGSIP 351 (560)
Q Consensus 273 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 351 (560)
++. .+|+.+..+..|++|++++|.+...--..+-.+++|++|.+++.+-+ ..+|.++..+.+|..++++.|.+. .+|
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP 238 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP 238 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cch
Confidence 766 55666666667777777777665432223334455555666554422 234555555555555555555554 444
Q ss_pred cCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCC
Q 038187 352 LEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQ 431 (560)
Q Consensus 352 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~ 431 (560)
+.+..+++|+.|++++|.+ +.. ....+...+|+.|+++.|+++ .+|+++.++++
T Consensus 239 ecly~l~~LrrLNLS~N~i------------------------teL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~k 292 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKI------------------------TEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTK 292 (1255)
T ss_pred HHHhhhhhhheeccCcCce------------------------eee-eccHHHHhhhhhhccccchhc-cchHHHhhhHH
Confidence 4444455555555555544 422 112223344555555555555 45555555555
Q ss_pred CCEEEccCCcCcc-cCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCc
Q 038187 432 LTTFDMHSNRING-SIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLS 510 (560)
Q Consensus 432 L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 510 (560)
|+.|.+.+|+++- .+|..++.+.+|+.+..++|.+. ..|+.+..|..|+.|.|+.|.+. .+|+.|.-++.|+.||+.
T Consensus 293 L~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlr 370 (1255)
T KOG0444|consen 293 LTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLR 370 (1255)
T ss_pred HHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeecc
Confidence 5555555555432 34555555555555555555554 45555555555555555555555 455555555555555555
Q ss_pred CCc
Q 038187 511 QNF 513 (560)
Q Consensus 511 ~n~ 513 (560)
.|.
T Consensus 371 eNp 373 (1255)
T KOG0444|consen 371 ENP 373 (1255)
T ss_pred CCc
Confidence 554
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.3e-34 Score=284.40 Aligned_cols=371 Identities=26% Similarity=0.433 Sum_probs=270.1
Q ss_pred CCCCCCEEECCCCCCC-CCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEcccCCCCccCccccCCCCCCCE
Q 038187 140 HLSKLENLNLSSNALD-GNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRS 218 (560)
Q Consensus 140 ~l~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 218 (560)
-++-.|-+|+++|.++ +..|.....+++++.|.|....+. .+|..++.|.+|++|.+++|++. .+...+..+++|+.
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRS 82 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHH
Confidence 4455666777788777 456777777777777777777765 56777777777777777777776 44455667777777
Q ss_pred EeCCCCcccc-cCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCCcCCccc-cccCCCCCCEEECcCC
Q 038187 219 LDLSLNELVG-PIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPS-TIANLVNLTSLFLCNN 296 (560)
Q Consensus 219 L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n 296 (560)
+.+..|++.. -+|..+..+..|..|+++.|++. ..|..+..-+++-.|+|++|++. .+|. .+.+++.|-.||+++|
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccc
Confidence 7777776642 34555556666666666666665 45555555556666666666655 2332 2334555555555555
Q ss_pred CCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCccCCCCCCEEEeecCcCc-CCCc
Q 038187 297 SQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLE-GPIP 375 (560)
Q Consensus 297 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 375 (560)
.+. .+|..+..+.+|++ |.+++|.+.-.--..+..+.+|++|.+++.+-+ ..+|
T Consensus 161 rLe-~LPPQ~RRL~~Lqt------------------------L~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~P 215 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQT------------------------LKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIP 215 (1255)
T ss_pred hhh-hcCHHHHHHhhhhh------------------------hhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCC
Confidence 544 23333444444444 444444443222223334556667777665432 4567
Q ss_pred hhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCC
Q 038187 376 STIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKH 455 (560)
Q Consensus 376 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 455 (560)
..+..+.+|..+|++.|.+. .+|+.+..+++|+.|+|++|+++ .+........+|++|+++.|+++ .+|..+..++.
T Consensus 216 tsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~k 292 (1255)
T KOG0444|consen 216 TSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTK 292 (1255)
T ss_pred CchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHH
Confidence 77788888888999888877 67889999999999999999998 55556667789999999999999 89999999999
Q ss_pred CCeeecccCcccc-cCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCccccCccCCCCCCCCEEeCC
Q 038187 456 VEDVYLFNNKLDG-PIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLC 534 (560)
Q Consensus 456 L~~L~l~~n~l~~-~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls 534 (560)
|+.|.+.+|+++- -+|..++.+.+|+++...+|.+. ..|+.+..|..|+.|.|++|++. .+|+.+.-++.|+.||+.
T Consensus 293 L~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlr 370 (1255)
T KOG0444|consen 293 LTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLR 370 (1255)
T ss_pred HHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeecc
Confidence 9999999999863 48999999999999999999999 89999999999999999999998 799999999999999999
Q ss_pred CCcCccccCcc
Q 038187 535 TNNLYGSIPES 545 (560)
Q Consensus 535 ~n~l~~~ip~~ 545 (560)
.|+-- ..|+.
T Consensus 371 eNpnL-VMPPK 380 (1255)
T KOG0444|consen 371 ENPNL-VMPPK 380 (1255)
T ss_pred CCcCc-cCCCC
Confidence 99765 44443
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=2.8e-34 Score=294.53 Aligned_cols=418 Identities=31% Similarity=0.446 Sum_probs=229.0
Q ss_pred CCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEE
Q 038187 117 LRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLD 196 (560)
Q Consensus 117 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 196 (560)
.-.|+.||+++|.+.. .|..+..+.+|+.|+++.|.+. ..|.+.+++.+|+++.|.+|.+. ..|..+..+++|++|+
T Consensus 44 ~v~L~~l~lsnn~~~~-fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISS-FPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLD 120 (1081)
T ss_pred eeeeEEeecccccccc-CCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccc
Confidence 3347777777776553 4566677777777777777665 45666777777777777777665 6677777777777777
Q ss_pred cccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCCcC
Q 038187 197 LSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEG 276 (560)
Q Consensus 197 l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 276 (560)
++.|.+. .+|.-+..+..+..+..++|...... +... ++.+++..|.+.+.++..+..++. .|+|.+|.+..
T Consensus 121 lS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~l----g~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~ 192 (1081)
T KOG0618|consen 121 LSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRL----GQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV 192 (1081)
T ss_pred cchhccC-CCchhHHhhhHHHHHhhhcchhhhhh----cccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhhh
Confidence 7777766 45555544444444444444211111 1111 444444444444444444444333 34555544431
Q ss_pred CccccccCC--------------------CCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCC
Q 038187 277 PIPSTIANL--------------------VNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARL 336 (560)
Q Consensus 277 ~~~~~l~~l--------------------~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 336 (560)
. .+.++ ++|+.|+.+.|.++...+. ....+|++++++.|++. .+|+|++.+.+|
T Consensus 193 ~---dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nl 266 (1081)
T KOG0618|consen 193 L---DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANL 266 (1081)
T ss_pred h---hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccc
Confidence 1 11222 3444555555544422211 12345666666666665 445666666666
Q ss_pred CEEEccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCC-CCCEEECcC
Q 038187 337 TTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLN-RLTSLDLSG 415 (560)
Q Consensus 337 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~L~~ 415 (560)
+.++..+|+++ .+|..+....+|+.|.+..|.+. .+|......++|++|++..|++....+..+.... +|..|..+.
T Consensus 267 e~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~ 344 (1081)
T KOG0618|consen 267 EALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSS 344 (1081)
T ss_pred eEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhh
Confidence 66666666664 45555555556666666666655 4444555566666666666665543221111111 133333344
Q ss_pred CcccccCCccc--cCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCccccc
Q 038187 416 NNLVGPIPSSV--GHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGS 493 (560)
Q Consensus 416 n~l~~~~p~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 493 (560)
|++. ..| .+ ...+.|+.|.+.+|.+++.....+.+.++|+.|+|++|++.......+.++..|++|+||+|.++ .
T Consensus 345 n~l~-~lp-~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~ 421 (1081)
T KOG0618|consen 345 NKLS-TLP-SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-T 421 (1081)
T ss_pred cccc-ccc-cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-h
Confidence 4333 222 11 12344556666666666555555556666666666666666444445556666666666666666 5
Q ss_pred ChhhhhcCcCCCeeeCcCCcCccccCccCCCCCCCCEEeCCCCcCc-cccCccC--CCCCCeeeeccc
Q 038187 494 IPSEIGKLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLY-GSIPESL--RKVPSLCVDGNN 558 (560)
Q Consensus 494 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~-~~ip~~~--~~l~~l~l~~n~ 558 (560)
+|..+.++..|++|....|++. ..| ++..++.|+.+|+|.|+++ +.+|... .+|+.|+++||.
T Consensus 422 Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 422 LPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 6666666666666666666665 455 5566666666666666665 2344432 355556666664
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=3.5e-32 Score=279.22 Aligned_cols=415 Identities=31% Similarity=0.391 Sum_probs=320.4
Q ss_pred CccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEcc
Q 038187 119 NLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLS 198 (560)
Q Consensus 119 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 198 (560)
.+..|+++.|.+-....+++.+.-+|+.||+++|.++ ..|..+..+++|+.|+++.|.+. ..|....++.+|+++.|.
T Consensus 22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence 3788888888776655677777778999999999887 68889999999999999999997 778899999999999999
Q ss_pred cCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCCcCCc
Q 038187 199 RNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPI 278 (560)
Q Consensus 199 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 278 (560)
+|.+. ..|..+..+++|++|+++.|++. .+|..+..++.+..+..++|... ..++... ++.+++..|.+.+.+
T Consensus 100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~----~~lg~~~-ik~~~l~~n~l~~~~ 172 (1081)
T KOG0618|consen 100 NNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKI----QRLGQTS-IKKLDLRLNVLGGSF 172 (1081)
T ss_pred cchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhh----hhhcccc-chhhhhhhhhcccch
Confidence 99887 88999999999999999999988 78889999999999999998322 2233333 788889888888888
Q ss_pred cccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCccCCC
Q 038187 279 PSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFN 358 (560)
Q Consensus 279 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 358 (560)
+..+..+.. .+++..|.+. . ..+..+++|+.+....|++... --.-++++.|+.++|.++...+ . ....
T Consensus 173 ~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~-~-p~p~ 241 (1081)
T KOG0618|consen 173 LIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDV-H-PVPL 241 (1081)
T ss_pred hcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeecc-c-cccc
Confidence 877776655 6999999887 2 2356677888888888776532 1234667777777777762222 1 1235
Q ss_pred CCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEcc
Q 038187 359 FLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMH 438 (560)
Q Consensus 359 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 438 (560)
+|++++++.|++. .+|+++..+.+|+.++...|+++ .+|..+...++|+.|++..|.+. .+|.....++.|++|++.
T Consensus 242 nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 242 NLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence 6777777777776 44577777777777777777774 45556666666667777666665 555556666667777776
Q ss_pred CCcCcccCCcc--------------------------ccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccc
Q 038187 439 SNRINGSIPLE--------------------------IGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSG 492 (560)
Q Consensus 439 ~n~l~~~~~~~--------------------------~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~ 492 (560)
.|++. ..|.. -...+.|+.|++.+|.+++...+.+.+...|+.|+|++|++..
T Consensus 319 ~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 319 SNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred hcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence 66655 22211 1234578899999999999888889999999999999999994
Q ss_pred cChhhhhcCcCCCeeeCcCCcCccccCccCCCCCCCCEEeCCCCcCccccCccCCCCCC---eeeecccCC
Q 038187 493 SIPSEIGKLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLYGSIPESLRKVPS---LCVDGNNFE 560 (560)
Q Consensus 493 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ip~~~~~l~~---l~l~~n~~~ 560 (560)
.....+.++..|+.|+|++|+++ .+|.++..++.|+.|....|++. ..|+ +.++.. +++|.|+++
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe-~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPE-LAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-echh-hhhcCcceEEecccchhh
Confidence 44456788999999999999999 79999999999999999999999 8884 555555 459999874
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.94 E-value=1.8e-25 Score=254.99 Aligned_cols=306 Identities=24% Similarity=0.303 Sum_probs=137.5
Q ss_pred CCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCCcCCccccccCCCCCCEEECcC
Q 038187 216 LRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCN 295 (560)
Q Consensus 216 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 295 (560)
|+.|++.++.+. .+|..+ ...+|++|++.++.+. .++..+..+++|+.|+++++.....+|. +..+++|+.|++.+
T Consensus 591 Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 591 LRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSD 666 (1153)
T ss_pred cEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecC
Confidence 444444444433 233333 2344444444444443 2333344444444444444332223332 33444444444444
Q ss_pred CCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCccCCCCCCEEEeecCcCcCCCc
Q 038187 296 NSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIP 375 (560)
Q Consensus 296 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 375 (560)
|.....+|..+..+++|+.|++++|...+.+|..+ ++++|+.|++++|...+.+|.. ..+|++|++++|.+. .+|
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP 741 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFP 741 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-ccc
Confidence 44333444444444444444444443333333322 3444444444444333333321 234444444444443 233
Q ss_pred hhccCCCCCCEEeccCCccc-------ccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCc
Q 038187 376 STIASLVNLTSLFLCNNSQT-------GFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPL 448 (560)
Q Consensus 376 ~~l~~~~~L~~L~l~~n~l~-------~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~ 448 (560)
..+ .+++|++|++.++... ...+......++|+.|++++|...+.+|..++++++|+.|++++|...+.+|.
T Consensus 742 ~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 742 SNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT 820 (1153)
T ss_pred ccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC
Confidence 222 2344444444432211 00111112234555555555554445555555555555555555543334444
Q ss_pred cccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCccccCccCCCCCCC
Q 038187 449 EIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFINGKIPSQLGEIPSI 528 (560)
Q Consensus 449 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 528 (560)
.+ ++++|++|++++|.....+|.. .++|+.|+|++|.++ .+|.++..+++|+.|++++|+-...+|..+..+++|
T Consensus 821 ~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L 895 (1153)
T PLN03210 821 GI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHL 895 (1153)
T ss_pred CC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCC
Confidence 43 4555555555555443333322 235555555555555 455555555555555555543333455555555555
Q ss_pred CEEeCCCC
Q 038187 529 DTVNLCTN 536 (560)
Q Consensus 529 ~~L~ls~n 536 (560)
+.+++++|
T Consensus 896 ~~L~l~~C 903 (1153)
T PLN03210 896 ETVDFSDC 903 (1153)
T ss_pred CeeecCCC
Confidence 55555555
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.94 E-value=3.5e-25 Score=252.77 Aligned_cols=339 Identities=21% Similarity=0.247 Sum_probs=209.4
Q ss_pred ccccCCCCCCCEEECCCCC------CCCCCCcCCCCCC-CCCEEeCcCCcCCcCCcccCCCCCCCCEEEcccCCCCccCc
Q 038187 135 LPTLGHLSKLENLNLSSNA------LDGNIPSTLGHLT-RLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIP 207 (560)
Q Consensus 135 ~~~l~~l~~L~~L~L~~n~------~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 207 (560)
..+|.++++|++|.+..+. +...+|..+..++ +|+.|++.++.+. .+|..+ ...+|++|++.+|.+. .++
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccc
Confidence 3456677777777775442 2223555555553 4777777777664 556555 4567777777777766 456
Q ss_pred cccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCCcCCccccccCCCC
Q 038187 208 STLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVN 287 (560)
Q Consensus 208 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 287 (560)
..+..+++|++|+++++.....+|. ++.+++|+.|++++|.....+|..++.+++|+.|++++|...+.+|..+ ++++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s 705 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS 705 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence 6667777777777776654445553 6667777777777776656677777777777777777765444566544 5667
Q ss_pred CCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccc-------cCCcCccCCCCC
Q 038187 288 LTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRING-------SIPLEIGNFNFL 360 (560)
Q Consensus 288 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~~l~~L 360 (560)
|+.|++++|...+.+|.. .++|+.|++++|.+. .+|..+ .+++|++|.+.++.... ..+.....+++|
T Consensus 706 L~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred CCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccc
Confidence 777777777554444432 346777777777664 455443 45666666666533210 111112234566
Q ss_pred CEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCC
Q 038187 361 QVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSN 440 (560)
Q Consensus 361 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 440 (560)
+.|++++|...+.+|..++.+++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.. ..+|++|++++|
T Consensus 781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n 856 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRT 856 (1153)
T ss_pred hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCC
Confidence 777777766666666666677777777777665555555544 4666777777766544444432 246666777776
Q ss_pred cCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccC
Q 038187 441 RINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNN 488 (560)
Q Consensus 441 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n 488 (560)
.++ .+|..+..+++|+.|++++|+-...+|..+..++.|+.+++++|
T Consensus 857 ~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 857 GIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 666 56666666667777777665443345555666666666666666
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=7.6e-26 Score=212.14 Aligned_cols=400 Identities=22% Similarity=0.247 Sum_probs=237.7
Q ss_pred CccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcC-CcCCcCCcccCCCCCCCCEEEc
Q 038187 119 NLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIAS-NQINSSIPLEIENLNFLQVLDL 197 (560)
Q Consensus 119 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~l~~l~~L~~L~l 197 (560)
.-..++|..|.|+...+.+|+.+++||.|||+.|.++.+.|++|.++++|..|-+.+ |+|+..-...|+++..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 567889999999988888999999999999999999999999999999988887777 8887555567889999999999
Q ss_pred ccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCc------------cCcccccCCCCCC
Q 038187 198 SRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRING------------SIPLEIGNFNFLQ 265 (560)
Q Consensus 198 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~------------~~~~~l~~l~~L~ 265 (560)
.-|++.....+.|..+++|..|.+..|.+.......|..+..++.+.+..|.+.. ..|..++......
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 9999988888889999999999999998874444478888888888888776321 1122222222222
Q ss_pred EEECcCCCCcCCccccccCCCCCCEE---ECcCCCCccccC-cccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEc
Q 038187 266 VLDLSYNKLEGPIPSTIANLVNLTSL---FLCNNSQTGFIP-STLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDM 341 (560)
Q Consensus 266 ~L~L~~n~l~~~~~~~l~~l~~L~~L---~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 341 (560)
-..+.+.++...-+..+.. +++.+ -.+.+...+..| ..|+.+++|++|++++|++++.-+.+|.....+++|.+
T Consensus 228 p~rl~~~Ri~q~~a~kf~c--~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLC--SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred hHHHHHHHhcccchhhhhh--hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 2222232222222221111 11111 111111222222 23555666666666666666555566666666666666
Q ss_pred cCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccC-cccccCCCCCCEEECcCCcccc
Q 038187 342 HSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFI-PSTLGHLNRLTSLDLSGNNLVG 420 (560)
Q Consensus 342 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~ 420 (560)
..|++...-...|..+..|+.|++.+|+++...|..|.....|.+|++-.|.+.-.- ..+++. .+.+...+|
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~-------Wlr~~~~~~ 378 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE-------WLRKKSVVG 378 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHH-------HHhhCCCCC
Confidence 666665443445555666666666666666555555555566666665554432110 000000 000000011
Q ss_pred cCCccccCCCCCCEEEccCCcCcc---cCCcc---------ccCCCCCCee-ecccCcccccCchhhhcCCCCCeeeCcc
Q 038187 421 PIPSSVGHLTQLTTFDMHSNRING---SIPLE---------IGNLKHVEDV-YLFNNKLDGPIPPQLLNCSRLRALSLSN 487 (560)
Q Consensus 421 ~~p~~~~~l~~L~~L~l~~n~l~~---~~~~~---------~~~l~~L~~L-~l~~n~l~~~~~~~l~~~~~L~~L~Ls~ 487 (560)
. |. -+....++.+.+++..+.. ..|+. -..++.+.++ ..++..+. .+|..+. ..-.++++.+
T Consensus 379 ~-~~-Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~g 453 (498)
T KOG4237|consen 379 N-PR-CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDG 453 (498)
T ss_pred C-CC-CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhccc
Confidence 1 00 0111123333333332211 11111 1123344333 23333333 5555443 3456888888
Q ss_pred CcccccChhhhhcCcCCCeeeCcCCcCccccCccCCCCCCCCEEeCCCC
Q 038187 488 NLLSGSIPSEIGKLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTN 536 (560)
Q Consensus 488 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n 536 (560)
|.++ .+|.+ .+.+| .+++++|+++----..|.++.+|..+-+|+|
T Consensus 454 n~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 454 NAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred chhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 8888 67766 55677 8899999887555567888888888888876
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=6.6e-25 Score=205.89 Aligned_cols=395 Identities=21% Similarity=0.240 Sum_probs=239.1
Q ss_pred CCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEccc-CCCCccCccccCCCCCCCEEeC
Q 038187 143 KLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSR-NEIGGSIPSTLGHLKRLRSLDL 221 (560)
Q Consensus 143 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~L 221 (560)
.-..++|..|.++.+.|.+|+.+++||.|||++|.|+.+-|.+|.++++|-.|.+.+ |+|+......|+.+..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 456789999999988888999999999999999999999999999999988887766 8888655577899999999999
Q ss_pred CCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCCcCCccccccCCCCCCEEECcCCCCccc
Q 038187 222 SLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGF 301 (560)
Q Consensus 222 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 301 (560)
.-|++.-...+.|..+++|..|.+.+|.+...--..+..+..++.+.+..|.+.. .++++-+.... ..
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~-a~------ 215 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDL-AM------ 215 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhhHH-hh------
Confidence 9999887777889999999999999998874433478888889998888776321 12222211111 00
Q ss_pred cCcccCCCCCCCEEEccCCcCcccCCccccC-CCCCCEEEccCCcccccCC-cCccCCCCCCEEEeecCcCcCCCchhcc
Q 038187 302 IPSTLGHLNRLTSLDLSGNNLVGPIPSSMGH-LARLTTFDMHSNRINGSIP-LEIGNFNFLQVLDLSYNKLEGPIPSTIA 379 (560)
Q Consensus 302 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 379 (560)
.|..++......-..+.+..+...-+..|.. ...+..--.+.+...+..| ..|..+++|++|++++|++++.-+.+|.
T Consensus 216 ~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe 295 (498)
T KOG4237|consen 216 NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE 295 (498)
T ss_pred chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc
Confidence 1111122222222222222222111111111 0111111111222222222 2355556666666666666655555565
Q ss_pred CCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcc---------------
Q 038187 380 SLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRING--------------- 444 (560)
Q Consensus 380 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~--------------- 444 (560)
....+++|++..|++...-...|..+..|+.|+|.+|+++...|..|..+.+|.+|++-.|.+.-
T Consensus 296 ~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~ 375 (498)
T KOG4237|consen 296 GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS 375 (498)
T ss_pred chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCC
Confidence 66666666666665554444455555666666666666665555556666666666665554321
Q ss_pred --cCCccccCCCCCCeeecccCcccc---cCchhh---------hcCCCCCee-eCccCcccccChhhhhcCcCCCeeeC
Q 038187 445 --SIPLEIGNLKHVEDVYLFNNKLDG---PIPPQL---------LNCSRLRAL-SLSNNLLSGSIPSEIGKLKELYYLDL 509 (560)
Q Consensus 445 --~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~l---------~~~~~L~~L-~Ls~n~l~~~~p~~l~~l~~L~~L~L 509 (560)
..|.. .....++.+.+++..+.+ ..|+.. ..++.+.+. ..|+..+. .+|.-+. ..-.++++
T Consensus 376 ~~~~~~C-q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl 451 (498)
T KOG4237|consen 376 VVGNPRC-QSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYL 451 (498)
T ss_pred CCCCCCC-CCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhc
Confidence 11111 112245566666655432 122222 123444433 33444444 5665554 35678999
Q ss_pred cCCcCccccCccCCCCCCCCEEeCCCCcCccccCccCCCCCCee---eecc
Q 038187 510 SQNFINGKIPSQLGEIPSIDTVNLCTNNLYGSIPESLRKVPSLC---VDGN 557 (560)
Q Consensus 510 ~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ip~~~~~l~~l~---l~~n 557 (560)
.+|.++ .+|.+ .+.+| .+|+|+|+++----..|.+++.|. |+||
T Consensus 452 ~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 452 DGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred ccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 999998 78876 66778 999999999854444566665554 8876
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=9.6e-22 Score=209.02 Aligned_cols=265 Identities=23% Similarity=0.314 Sum_probs=158.9
Q ss_pred CCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCCcCCccccccCCCCCCEEEC
Q 038187 214 KRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFL 293 (560)
Q Consensus 214 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 293 (560)
..-..|+++++.++ .+|..+. ++|+.|++.+|+++ .+|. ..++|++|++++|+++ .+|.. .++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeec
Confidence 44667888888887 5666664 37888888888877 3554 2467788888888777 34432 356777777
Q ss_pred cCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCccCCCCCCEEEeecCcCcCC
Q 038187 294 CNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGP 373 (560)
Q Consensus 294 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 373 (560)
.+|.+.. +|.. .++|+.|++++|+++ .+|. ..++|+.|++++|++.+ +|.. ..+|+.|++++|.+++
T Consensus 270 s~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 270 FSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS- 336 (788)
T ss_pred cCCchhh-hhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-
Confidence 7777663 3332 246777777777776 3443 24567777777777763 3432 2346666777776653
Q ss_pred CchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCC
Q 038187 374 IPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNL 453 (560)
Q Consensus 374 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 453 (560)
+|.. .++|+.|++++|++++ +|.. .++|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|.. .
T Consensus 337 LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~ 401 (788)
T PRK15387 337 LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---P 401 (788)
T ss_pred cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCc---c
Confidence 3321 1356667777666664 3322 245666666666665 34432 245666666666666 34432 2
Q ss_pred CCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCccccCccC
Q 038187 454 KHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFINGKIPSQL 522 (560)
Q Consensus 454 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 522 (560)
++|+.|++++|+++. +|.. ..+|+.|++++|+++ .+|..+.++++|+.|+|++|+++|..|..+
T Consensus 402 s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 402 SELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred cCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 456666666666653 4432 234556666666666 456666666666666666666666555544
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=1.7e-20 Score=199.62 Aligned_cols=264 Identities=25% Similarity=0.382 Sum_probs=152.4
Q ss_pred CEEEcccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCC
Q 038187 193 QVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYN 272 (560)
Q Consensus 193 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n 272 (560)
..|+++++.++ .+|..+. ++|+.|++.+|+++. +|. .+++|++|++++|+++ .+|.. .++|+.|++++|
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSN 272 (788)
T ss_pred cEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCC
Confidence 34444444444 3333332 234444444444442 222 1244555555555554 22321 234555555555
Q ss_pred CCcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCc
Q 038187 273 KLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPL 352 (560)
Q Consensus 273 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 352 (560)
.+. .+|.. .++|+.|++++|+++. +|. ..++|+.|++++|++.+ +|.. ..+|+.|++++|.++ .+|.
T Consensus 273 ~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~ 339 (788)
T PRK15387 273 PLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPT 339 (788)
T ss_pred chh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCccc-cccc
Confidence 554 23321 2345556666665553 232 13456666666666653 3321 234566666666665 2442
Q ss_pred CccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCC
Q 038187 353 EIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQL 432 (560)
Q Consensus 353 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L 432 (560)
. .++|++|++++|++++ +|.. .++|+.|++++|.+++ +|.. ..+|+.|++++|+++ .+|.. .++|
T Consensus 340 l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L 404 (788)
T PRK15387 340 L---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL---PSEL 404 (788)
T ss_pred c---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCc---ccCC
Confidence 1 1457777777777763 3432 2466777777777764 4432 246788888888877 35543 3578
Q ss_pred CEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhc
Q 038187 433 TTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGK 500 (560)
Q Consensus 433 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~ 500 (560)
+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|..+..+++|+.|+|++|++++..+..+..
T Consensus 405 ~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 405 KELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred CEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 88888888887 45643 246778888888888 67888888888999999999998887776644
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=1.2e-19 Score=194.42 Aligned_cols=246 Identities=24% Similarity=0.390 Sum_probs=123.1
Q ss_pred CCCEEEcccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECc
Q 038187 191 FLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLS 270 (560)
Q Consensus 191 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~ 270 (560)
+...|+++++.++ .+|..+. +.|+.|++++|+++ .+|..+. ++|++|++++|+++ .+|..+. ++|+.|+++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 4456666666655 3444332 35666666666555 2333322 35555555555554 2333221 234444444
Q ss_pred CCCCcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccC
Q 038187 271 YNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSI 350 (560)
Q Consensus 271 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 350 (560)
+|.+. .+|..+. ++|+.|++++|++. .+|..+. ++|++|++++|+++ .+
T Consensus 250 ~N~L~-~LP~~l~--------------------------s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~L 298 (754)
T PRK15370 250 INRIT-ELPERLP--------------------------SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TL 298 (754)
T ss_pred CCccC-cCChhHh--------------------------CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cC
Confidence 44444 2333221 24444555544444 2333221 34555555555554 23
Q ss_pred CcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCC
Q 038187 351 PLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLT 430 (560)
Q Consensus 351 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~ 430 (560)
|..+. ++|+.|++++|.+.. +|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+ .+
T Consensus 299 P~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~ 367 (754)
T PRK15370 299 PAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PP 367 (754)
T ss_pred cccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cC
Confidence 32221 345555555555552 23222 2456666666665554 343332 46666666666665 445443 24
Q ss_pred CCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhh----hcCCCCCeeeCccCccc
Q 038187 431 QLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQL----LNCSRLRALSLSNNLLS 491 (560)
Q Consensus 431 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l----~~~~~L~~L~Ls~n~l~ 491 (560)
+|++|++++|+++ .+|..+. ..|+.|++++|++. .+|..+ ..++.+..|++.+|.++
T Consensus 368 ~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 368 TITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 6666777766666 4454443 35666677777666 334333 33466677777777766
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=1.3e-19 Score=194.09 Aligned_cols=243 Identities=23% Similarity=0.406 Sum_probs=171.2
Q ss_pred CCCEEECcCCCCcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEcc
Q 038187 263 FLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMH 342 (560)
Q Consensus 263 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 342 (560)
.++.|++++|+++ .+|..+. ++|+.|++++|.++. +|..+. ++|+.|++++|.+. .+|..+. .+|+.|+++
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLF 270 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence 4555555555555 3343332 356666666666653 343332 46888888888876 5666543 589999999
Q ss_pred CCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccC
Q 038187 343 SNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPI 422 (560)
Q Consensus 343 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 422 (560)
+|+++ .+|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|.++. +|..+ .++|+.|++++|.+++ +
T Consensus 271 ~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-L 340 (754)
T PRK15370 271 HNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-L 340 (754)
T ss_pred CCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-C
Confidence 99998 5676553 589999999999884 454432 478999999999885 45433 3689999999999884 6
Q ss_pred CccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhh---
Q 038187 423 PSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIG--- 499 (560)
Q Consensus 423 p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~--- 499 (560)
|..+. ++|+.|++++|+++ .+|..+. ++|++|++++|+++ .+|..+. ..|+.|++++|+++ .+|..+.
T Consensus 341 P~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~ 411 (754)
T PRK15370 341 PASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFR 411 (754)
T ss_pred Chhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHh
Confidence 76553 68999999999988 5676553 68999999999998 4666664 36999999999998 5565443
Q ss_pred -cCcCCCeeeCcCCcCccccCccCCCCCCCCEEeCCCCcCcc
Q 038187 500 -KLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLYG 540 (560)
Q Consensus 500 -~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~ 540 (560)
.++.+..|++.+|+++. ..+++|+.+ ++.+.+.|
T Consensus 412 ~~~~~l~~L~L~~Npls~------~tl~~L~~L-l~s~~~~g 446 (754)
T PRK15370 412 GEGPQPTRIIVEYNPFSE------RTIQNMQRL-MSSVGYQG 446 (754)
T ss_pred hcCCCccEEEeeCCCccH------HHHHHHHHh-hhcccccC
Confidence 45788999999999873 233444444 44455554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.80 E-value=5e-21 Score=190.44 Aligned_cols=209 Identities=21% Similarity=0.254 Sum_probs=106.5
Q ss_pred ccCCCCCCEEEccCCcccccCCcCccCCC---CCCEEEeecCcCcC----CCchhccCC-CCCCEEeccCCccccc----
Q 038187 330 MGHLARLTTFDMHSNRINGSIPLEIGNFN---FLQVLDLSYNKLEG----PIPSTIASL-VNLTSLFLCNNSQTGF---- 397 (560)
Q Consensus 330 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---~L~~L~l~~n~~~~----~~~~~l~~~-~~L~~L~l~~n~l~~~---- 397 (560)
+..+++|++|++++|.+.+..+..+..+. +|++|++++|.+.+ .+...+..+ ++|+.|++++|.+++.
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 44455555555555555433333333332 26666666665542 122233444 5666666666665532
Q ss_pred CcccccCCCCCCEEECcCCccccc----CCccccCCCCCCEEEccCCcCccc----CCccccCCCCCCeeecccCccccc
Q 038187 398 IPSTLGHLNRLTSLDLSGNNLVGP----IPSSVGHLTQLTTFDMHSNRINGS----IPLEIGNLKHVEDVYLFNNKLDGP 469 (560)
Q Consensus 398 ~~~~~~~~~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~ 469 (560)
++..+..+++|+.|++++|.+++. ++..+..+++|++|++++|.+++. +...+..+++|++|++++|++++.
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~ 236 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA 236 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence 222344455666666666665532 222333445666666666665432 223344556666666666666542
Q ss_pred Cchhhhc-----CCCCCeeeCccCcccc----cChhhhhcCcCCCeeeCcCCcCccc----cCccCCCC-CCCCEEeCCC
Q 038187 470 IPPQLLN-----CSRLRALSLSNNLLSG----SIPSEIGKLKELYYLDLSQNFINGK----IPSQLGEI-PSIDTVNLCT 535 (560)
Q Consensus 470 ~~~~l~~-----~~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l-~~L~~L~ls~ 535 (560)
....+.. .+.|++|++++|.+++ .+...+..+++|+++++++|+++.. +...+... +.++.+++.+
T Consensus 237 ~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 237 GAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred HHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence 2222211 2566666666666652 2233444556666666666666643 33334344 4566666666
Q ss_pred CcC
Q 038187 536 NNL 538 (560)
Q Consensus 536 n~l 538 (560)
|++
T Consensus 317 ~~~ 319 (319)
T cd00116 317 DSF 319 (319)
T ss_pred CCC
Confidence 543
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.79 E-value=9.9e-21 Score=188.34 Aligned_cols=252 Identities=26% Similarity=0.271 Sum_probs=179.4
Q ss_pred CCCCCCEEEccCCcCccc----CCccccCCCCCCEEEccCCccc------ccCCcCccCCCCCCEEEeecCcCcCCCchh
Q 038187 308 HLNRLTSLDLSGNNLVGP----IPSSMGHLARLTTFDMHSNRIN------GSIPLEIGNFNFLQVLDLSYNKLEGPIPST 377 (560)
Q Consensus 308 ~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 377 (560)
.+.+|+.++++++.+++. ++..+...+++++++++++.+. ..++..+..+++|+.|++++|.+.+..+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 344455555555544221 2333444555666666555544 123445667889999999999998766666
Q ss_pred ccCCCC---CCEEeccCCcccc----cCcccccCC-CCCCEEECcCCccccc----CCccccCCCCCCEEEccCCcCccc
Q 038187 378 IASLVN---LTSLFLCNNSQTG----FIPSTLGHL-NRLTSLDLSGNNLVGP----IPSSVGHLTQLTTFDMHSNRINGS 445 (560)
Q Consensus 378 l~~~~~---L~~L~l~~n~l~~----~~~~~~~~~-~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~ 445 (560)
+..+.. |++|++++|++++ .+...+..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 180 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence 555554 9999999999884 233445566 8999999999998843 344566778999999999999853
Q ss_pred ----CCccccCCCCCCeeecccCccccc----CchhhhcCCCCCeeeCccCcccccChhhhhc-----CcCCCeeeCcCC
Q 038187 446 ----IPLEIGNLKHVEDVYLFNNKLDGP----IPPQLLNCSRLRALSLSNNLLSGSIPSEIGK-----LKELYYLDLSQN 512 (560)
Q Consensus 446 ----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~-----l~~L~~L~L~~n 512 (560)
++..+..+++|++|++++|.+.+. ++..+..+++|++|++++|.+++..+..+.. .+.|++|++++|
T Consensus 181 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC
Confidence 333455667999999999998754 3345667889999999999999754444433 379999999999
Q ss_pred cCc----cccCccCCCCCCCCEEeCCCCcCccc----cCcc---C-CCCCCeeeecccC
Q 038187 513 FIN----GKIPSQLGEIPSIDTVNLCTNNLYGS----IPES---L-RKVPSLCVDGNNF 559 (560)
Q Consensus 513 ~l~----~~~p~~l~~l~~L~~L~ls~n~l~~~----ip~~---~-~~l~~l~l~~n~~ 559 (560)
.++ +.+++.+..+++|+.+++++|+++.. +... + ..+.++++.+|.|
T Consensus 261 ~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 261 DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 997 23556677778999999999999954 4433 3 3566677887765
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=1.6e-19 Score=150.96 Aligned_cols=173 Identities=32% Similarity=0.551 Sum_probs=124.9
Q ss_pred cccccccccCCCCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCccc
Q 038187 106 SCFPNLKKMGRLRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLE 185 (560)
Q Consensus 106 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 185 (560)
++|..+..+..+.+.+.|.+++|.++. +|+.+..+.+|++|++.+|.+. .+|.+++.+++|+.|++.-|++. ..|..
T Consensus 21 Ssf~~~~gLf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprg 97 (264)
T KOG0617|consen 21 SSFEELPGLFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRG 97 (264)
T ss_pred ccHhhcccccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccc
Confidence 344444457777788888888888774 4667778888888888888776 57777888888888888877775 67777
Q ss_pred CCCCCCCCEEEcccCCCCc-cCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCC
Q 038187 186 IENLNFLQVLDLSRNEIGG-SIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFL 264 (560)
Q Consensus 186 l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 264 (560)
|+.++.|++||+.+|.+.. .+|..|..+..|+.|+++.|.+. .+|..++++++|+.|.+.+|.+- .+|..++.+..|
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~l 175 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRL 175 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHH
Confidence 8888888888887777664 56666667777777777777766 56666777777777777777665 566777777777
Q ss_pred CEEECcCCCCcCCccccccC
Q 038187 265 QVLDLSYNKLEGPIPSTIAN 284 (560)
Q Consensus 265 ~~L~L~~n~l~~~~~~~l~~ 284 (560)
++|++.+|+++ .+|+.+++
T Consensus 176 relhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 176 RELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred HHHhcccceee-ecChhhhh
Confidence 77777777766 45554443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=1e-18 Score=146.09 Aligned_cols=181 Identities=30% Similarity=0.476 Sum_probs=113.4
Q ss_pred CCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEE
Q 038187 356 NFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTF 435 (560)
Q Consensus 356 ~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 435 (560)
.+...+.|.++.|+++ .+|..+..+.+|+.|++++|+++ .+|..++.+++|+.|++.-|++. ..|..|+.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 3455666667777766 44555666667777777766666 35666666777777777766665 666677777777777
Q ss_pred EccCCcCcc-cCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcC
Q 038187 436 DMHSNRING-SIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFI 514 (560)
Q Consensus 436 ~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 514 (560)
|+.+|++.. .+|..|..+..|+-|++++|.+. .+|..++.+++|+.|.+.+|.+. .+|.+++.++.|++|.+.+|++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 777666653 35555666666666666666666 55666666666666666666666 5666666666666666666666
Q ss_pred ccccCccCCCCCCC---CEEeCCCCcCcccc
Q 038187 515 NGKIPSQLGEIPSI---DTVNLCTNNLYGSI 542 (560)
Q Consensus 515 ~~~~p~~l~~l~~L---~~L~ls~n~l~~~i 542 (560)
+ .+|.+++.+.-+ +.+.+.+|++...|
T Consensus 186 ~-vlppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 186 T-VLPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred e-ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 6 555555544321 23344455544333
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.48 E-value=1.2e-13 Score=147.89 Aligned_cols=106 Identities=33% Similarity=0.592 Sum_probs=79.6
Q ss_pred ccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEccc
Q 038187 120 LVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSR 199 (560)
Q Consensus 120 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 199 (560)
++.|+|++|.+.+.+|..++.+++|++|+|++|.+.|.+|..++.+++|++|+|++|.+++.+|..++++++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 45667777777777777788888888888888888777777777888888888888888777777777777888888877
Q ss_pred CCCCccCccccCCC-CCCCEEeCCCCc
Q 038187 200 NEIGGSIPSTLGHL-KRLRSLDLSLNE 225 (560)
Q Consensus 200 n~~~~~~~~~l~~l-~~L~~L~L~~n~ 225 (560)
|.+++.+|..+... .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 77777777766543 355566666664
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.28 E-value=8.2e-14 Score=137.66 Aligned_cols=174 Identities=30% Similarity=0.462 Sum_probs=153.0
Q ss_pred CCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEE
Q 038187 357 FNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFD 436 (560)
Q Consensus 357 l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 436 (560)
+.--...+++.|++. ++|..+..+-.|+.+.++.|.+- .+|..+..+..|++++|+.|+++ .+|..++.++ |+.|.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 344456788899887 77888888888999999988876 57888999999999999999998 7888887764 99999
Q ss_pred ccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCcc
Q 038187 437 MHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFING 516 (560)
Q Consensus 437 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 516 (560)
+++|+++ .+|..++..+.|..|+.+.|.+. .+|..++++.+|+.|.+..|++. .+|+++.. -.|..||+++|+++
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis- 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS- 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-
Confidence 9999998 88988998899999999999998 67888999999999999999999 67888884 46999999999998
Q ss_pred ccCccCCCCCCCCEEeCCCCcCc
Q 038187 517 KIPSQLGEIPSIDTVNLCTNNLY 539 (560)
Q Consensus 517 ~~p~~l~~l~~L~~L~ls~n~l~ 539 (560)
.||-+|.+|+.|++|.|.+|++.
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC
Confidence 89999999999999999999997
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.24 E-value=1e-11 Score=127.20 Aligned_cols=199 Identities=40% Similarity=0.566 Sum_probs=126.7
Q ss_pred EEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCccCCC-CCCEEEeecCcCcCCCchhccCCCCCCEEeccCC
Q 038187 314 SLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFN-FLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNN 392 (560)
Q Consensus 314 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 392 (560)
.++...+.+...... +...+.++.+++.+|.++ .++....... +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNISE-LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCchh-hhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 566666666333222 344567778888888777 4555555553 7777788777776 44455667777777777777
Q ss_pred cccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCch
Q 038187 393 SQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPP 472 (560)
Q Consensus 393 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 472 (560)
++... |...+..+.|+.|++++|++. .+|........|+++.+++|+.. ..+..+..++++..+.+.+|++.. ++.
T Consensus 174 ~l~~l-~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~ 249 (394)
T COG4886 174 DLSDL-PKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPE 249 (394)
T ss_pred hhhhh-hhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccc
Confidence 77643 333335677777777777776 55555445555777777777543 445556666667777777776663 355
Q ss_pred hhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCccccCcc
Q 038187 473 QLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFINGKIPSQ 521 (560)
Q Consensus 473 ~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 521 (560)
.++.+++++.|++++|+++ .++. ++...+++.|++++|.++...|..
T Consensus 250 ~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 250 SIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred hhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhh
Confidence 6666666777777777777 3333 666677777777777766555543
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.24 E-value=3.4e-13 Score=133.35 Aligned_cols=195 Identities=30% Similarity=0.428 Sum_probs=167.9
Q ss_pred CCCCCEEEccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEE
Q 038187 333 LARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLD 412 (560)
Q Consensus 333 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 412 (560)
+.--...+++.|++. ++|..+..|..|+.+.+..|.+. .+|..+..+..|+.++++.|+++ ..|..++.++ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 444567789999998 88999999999999999999988 78889999999999999999988 4677777665 89999
Q ss_pred CcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccc
Q 038187 413 LSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSG 492 (560)
Q Consensus 413 L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~ 492 (560)
+++|+++ .+|..++..+.|..||.+.|++. .+|..++++.+|+.|++..|.+. .+|+.+. .-.|.+||++.|+++
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis- 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS- 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-
Confidence 9999998 88999999999999999999998 88999999999999999999999 5677777 456999999999999
Q ss_pred cChhhhhcCcCCCeeeCcCCcCccccCccCCCC---CCCCEEeCCCCc
Q 038187 493 SIPSEIGKLKELYYLDLSQNFINGKIPSQLGEI---PSIDTVNLCTNN 537 (560)
Q Consensus 493 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~ls~n~ 537 (560)
.||-+|.+|+.|++|-|.+|.+. .-|.+++.. .-.++|+...|+
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 89999999999999999999997 455555432 334677777674
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.19 E-value=1.9e-11 Score=125.30 Aligned_cols=202 Identities=36% Similarity=0.534 Sum_probs=154.7
Q ss_pred CEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCC-CCCEEEccCCcccccCCcCccCCCCCCEEEeec
Q 038187 289 TSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLA-RLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSY 367 (560)
Q Consensus 289 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 367 (560)
..++...+.+.... ..+..++.++.+++.+|.+. .++....... +|+.|++++|.+. .+|..+..+++|+.|++++
T Consensus 96 ~~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 96 PSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred ceeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 35777777664332 23455678999999999987 5555566664 8999999999988 5556678889999999999
Q ss_pred CcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCC
Q 038187 368 NKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIP 447 (560)
Q Consensus 368 n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~ 447 (560)
|++. .+|......+.|+.|++++|++.. +|........|+++.+++|+.. ..+..+.++.++..+.+.+|++. .++
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence 9988 455555578899999999998884 4555455566999999999654 55667788888888888888887 446
Q ss_pred ccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhh
Q 038187 448 LEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIG 499 (560)
Q Consensus 448 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~ 499 (560)
..+..++++++|++++|+++.. +. ++...+++.|++++|.++...|....
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred chhccccccceecccccccccc-cc-ccccCccCEEeccCccccccchhhhc
Confidence 6778888899999999999854 33 88889999999999999876665443
No 28
>PLN03150 hypothetical protein; Provisional
Probab=99.18 E-value=4.7e-11 Score=128.07 Aligned_cols=112 Identities=32% Similarity=0.575 Sum_probs=72.1
Q ss_pred CCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcC
Q 038187 432 LTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQ 511 (560)
Q Consensus 432 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 511 (560)
++.|+|++|.+.|.+|..+..+++|+.|++++|.+.|.+|..++.+++|+.|+|++|+++|.+|+.++++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 55666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CcCccccCccCCCC-CCCCEEeCCCCcCccccC
Q 038187 512 NFINGKIPSQLGEI-PSIDTVNLCTNNLYGSIP 543 (560)
Q Consensus 512 n~l~~~~p~~l~~l-~~L~~L~ls~n~l~~~ip 543 (560)
|+++|.+|..+... .++..+++.+|.....+|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 66666666665543 345566666665443333
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.17 E-value=2.1e-12 Score=120.79 Aligned_cols=233 Identities=18% Similarity=0.207 Sum_probs=108.6
Q ss_pred ccCCCCCCEEECcCCCCccc----cCcccCCCCCCCEEEccCCc---CcccCCcc-------ccCCCCCCEEEccCCccc
Q 038187 282 IANLVNLTSLFLCNNSQTGF----IPSTLGHLNRLTSLDLSGNN---LVGPIPSS-------MGHLARLTTFDMHSNRIN 347 (560)
Q Consensus 282 l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~---~~~~~~~~-------~~~l~~L~~L~l~~n~l~ 347 (560)
+.....++.+++++|.+... +...+.+.++|+..++++-- ....+|+. +..++.|++++||+|-+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 44566777888888776533 23344556677777766531 11223332 234456666666666665
Q ss_pred ccCCcC----ccCCCCCCEEEeecCcCcCCCch-------------hccCCCCCCEEeccCCccccc----CcccccCCC
Q 038187 348 GSIPLE----IGNFNFLQVLDLSYNKLEGPIPS-------------TIASLVNLTSLFLCNNSQTGF----IPSTLGHLN 406 (560)
Q Consensus 348 ~~~~~~----~~~l~~L~~L~l~~n~~~~~~~~-------------~l~~~~~L~~L~l~~n~l~~~----~~~~~~~~~ 406 (560)
...+.. +..+..|++|.+.+|.+...--. -...-+.|+.+...+|++... +...+...+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 433332 23455666666666654321111 122334555555555554432 112234445
Q ss_pred CCCEEECcCCccccc----CCccccCCCCCCEEEccCCcCccc----CCccccCCCCCCeeecccCcccccCchhh----
Q 038187 407 RLTSLDLSGNNLVGP----IPSSVGHLTQLTTFDMHSNRINGS----IPLEIGNLKHVEDVYLFNNKLDGPIPPQL---- 474 (560)
Q Consensus 407 ~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~l---- 474 (560)
.|+.+.+..|.+... +...+.+++.|+.|||.+|-++.. +...++.+++|++|++++|.+.......+
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 555555555544211 112344455555555555544421 22233344455555555555443322222
Q ss_pred -hcCCCCCeeeCccCccccc----ChhhhhcCcCCCeeeCcCCcC
Q 038187 475 -LNCSRLRALSLSNNLLSGS----IPSEIGKLKELYYLDLSQNFI 514 (560)
Q Consensus 475 -~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l 514 (560)
...+.|++|.+.+|.++.. +..++...+.|..|+|++|.+
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 1234455555555544421 122333344455555555544
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.16 E-value=5.4e-12 Score=118.12 Aligned_cols=233 Identities=20% Similarity=0.219 Sum_probs=144.7
Q ss_pred cccCCCCCCEEECcCCCCcCCc----cccccCCCCCCEEECcCCCCcc----ccCc-------ccCCCCCCCEEEccCCc
Q 038187 257 EIGNFNFLQVLDLSYNKLEGPI----PSTIANLVNLTSLFLCNNSQTG----FIPS-------TLGHLNRLTSLDLSGNN 321 (560)
Q Consensus 257 ~l~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~l~~n~~~~----~~~~-------~l~~l~~L~~L~l~~n~ 321 (560)
.+..+..++++++++|.+...- .+.+.+.++|+..+++.- ++| .+|+ .+..+++|++|+|++|-
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 3455677788888888765432 233455667777776653 222 2222 33456688888888887
Q ss_pred CcccCCcc----ccCCCCCCEEEccCCccccc-------------CCcCccCCCCCCEEEeecCcCcCCC----chhccC
Q 038187 322 LVGPIPSS----MGHLARLTTFDMHSNRINGS-------------IPLEIGNFNFLQVLDLSYNKLEGPI----PSTIAS 380 (560)
Q Consensus 322 ~~~~~~~~----~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~l~~L~~L~l~~n~~~~~~----~~~l~~ 380 (560)
+....++. +..+..|++|.|.+|.+... .....+.-+.|+++...+|++.... ...+..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 75444333 34567788888888876421 1112334567888888888775422 234556
Q ss_pred CCCCCEEeccCCccccc----CcccccCCCCCCEEECcCCccccc----CCccccCCCCCCEEEccCCcCcccCCccc--
Q 038187 381 LVNLTSLFLCNNSQTGF----IPSTLGHLNRLTSLDLSGNNLVGP----IPSSVGHLTQLTTFDMHSNRINGSIPLEI-- 450 (560)
Q Consensus 381 ~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~~~~~-- 450 (560)
.+.|+.+.+..|.+... +...+.++++|++|||.+|.++.. +...+..++.|+.|++++|.+.......+
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 67888888887766532 234566778888888888877532 33345556778888888887764333222
Q ss_pred ---cCCCCCCeeecccCccccc----CchhhhcCCCCCeeeCccCcc
Q 038187 451 ---GNLKHVEDVYLFNNKLDGP----IPPQLLNCSRLRALSLSNNLL 490 (560)
Q Consensus 451 ---~~l~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~Ls~n~l 490 (560)
...+.|+.+.+.+|.++.. +...+...+.|+.|+|++|.+
T Consensus 264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2356788888888877642 233345567788888888877
No 31
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.15 E-value=1.9e-11 Score=133.87 Aligned_cols=275 Identities=23% Similarity=0.262 Sum_probs=157.9
Q ss_pred cCCCCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCC--CCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCC
Q 038187 114 MGRLRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNA--LDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNF 191 (560)
Q Consensus 114 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~--~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~ 191 (560)
..+....+.+.+.+|.+... +.. ..+++|++|-+..|. +....+..|..++.|++|||++|.--+.+|..++++-+
T Consensus 519 ~~~~~~~rr~s~~~~~~~~~-~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIEHI-AGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred ccchhheeEEEEeccchhhc-cCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 34445677777777765432 111 234578888888885 44344445788899999999988777788888999999
Q ss_pred CCEEEcccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCC--ccCcccccCCCCCCEEEC
Q 038187 192 LQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRIN--GSIPLEIGNFNFLQVLDL 269 (560)
Q Consensus 192 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~L 269 (560)
||+|+++++.+. .+|..+++++.|.+|++..+.-...+|.....+++|++|.+...... ...-..+..+.+|+.+..
T Consensus 597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 999999988887 78888888999999998887765555666667888998888765422 222223344555555444
Q ss_pred cCCCCcCCccccccCCCCCC----EEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccC------CCCCCEE
Q 038187 270 SYNKLEGPIPSTIANLVNLT----SLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGH------LARLTTF 339 (560)
Q Consensus 270 ~~n~l~~~~~~~l~~l~~L~----~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~------l~~L~~L 339 (560)
..... .+-..+..++.|. .+.+.++... ..+..+..+.+|+.|.+.++.+......+... ++++..+
T Consensus 676 ~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~ 752 (889)
T KOG4658|consen 676 TISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKV 752 (889)
T ss_pred ecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHH
Confidence 33222 1111122222222 2222222222 23345667778888888777765432222111 1222222
Q ss_pred EccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCccc
Q 038187 340 DMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQT 395 (560)
Q Consensus 340 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 395 (560)
.+.++... ..+.+....++|+.|.+..+.....+......+..++.+.+..+.+.
T Consensus 753 ~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 753 SILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE 807 (889)
T ss_pred Hhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence 22333222 11222223466777777666555444444444444444444444433
No 32
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.09 E-value=4.2e-11 Score=131.11 Aligned_cols=268 Identities=23% Similarity=0.245 Sum_probs=176.0
Q ss_pred CCCCCccEEECcCCC--CCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCC
Q 038187 115 GRLRNLVHLDLSDNY--IEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFL 192 (560)
Q Consensus 115 ~~l~~L~~L~L~~n~--l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 192 (560)
...+.|+.|-+..|. +.....+.|..++.|++|||++|.-.+.+|..++.+-+||+|+++++.+. .+|..+.++..|
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL 620 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence 455678899888885 55555667899999999999999777889999999999999999999998 789999999999
Q ss_pred CEEEcccCCCCccCccccCCCCCCCEEeCCCCccc--ccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCC----E
Q 038187 193 QVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELV--GPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQ----V 266 (560)
Q Consensus 193 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~----~ 266 (560)
.+|++..+.....+|.....+++||+|.+...... ...-..+.++++|+.+....... .+...+..+..|+ .
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~ 698 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQS 698 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHh
Confidence 99999988766566666777999999999876522 12222344556666655533322 1112222333333 2
Q ss_pred EECcCCCCcCCccccccCCCCCCEEECcCCCCccccCcccCC------CCCCCEEEccCCcCcccCCccccCCCCCCEEE
Q 038187 267 LDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGH------LNRLTSLDLSGNNLVGPIPSSMGHLARLTTFD 340 (560)
Q Consensus 267 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~------l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 340 (560)
+.+..+... ..+..+..+.+|+.|.+.++............ ++++..+.+.++... ..+.+....++|+.|.
T Consensus 699 l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~ 776 (889)
T KOG4658|consen 699 LSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLS 776 (889)
T ss_pred hhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEE
Confidence 333222222 34456778889999999998876432222111 234444444444322 2334445678999999
Q ss_pred ccCCcccccCCcCccCCCCCCEEEeecCcCcCC-CchhccCCCCCCEE
Q 038187 341 MHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGP-IPSTIASLVNLTSL 387 (560)
Q Consensus 341 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L 387 (560)
+..+.....+.+....+..++.+.+..+.+.+. .....+.++++..+
T Consensus 777 l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~ 824 (889)
T KOG4658|consen 777 LVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWL 824 (889)
T ss_pred EecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEec
Confidence 999887766666666666666666666665544 23333344444333
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=3.2e-11 Score=110.49 Aligned_cols=130 Identities=31% Similarity=0.396 Sum_probs=76.8
Q ss_pred CCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeee
Q 038187 405 LNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALS 484 (560)
Q Consensus 405 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ 484 (560)
.+.|+.+|+++|.++ .+.++..-.|.++.|++++|.+.. + ..+..+++|+.|++++|.++ .+..+-..+.++++|.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 345666666666665 445555556666666666666652 2 22556666666666666665 3333344556666677
Q ss_pred CccCcccccChhhhhcCcCCCeeeCcCCcCccc-cCccCCCCCCCCEEeCCCCcCcc
Q 038187 485 LSNNLLSGSIPSEIGKLKELYYLDLSQNFINGK-IPSQLGEIPSIDTVNLCTNNLYG 540 (560)
Q Consensus 485 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~ls~n~l~~ 540 (560)
|++|.+... ..++.+-+|..||+++|+|..- --..++++|-|+++.|.+|++++
T Consensus 359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 766665522 2355556666667777766522 12356666677777777777664
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.7e-11 Score=116.52 Aligned_cols=209 Identities=21% Similarity=0.212 Sum_probs=141.6
Q ss_pred cCCCCCCEEEccCCcccccCC-cCccCCCCCCEEEeecCcCcC--CCchhccCCCCCCEEeccCCcccccCccc-ccCCC
Q 038187 331 GHLARLTTFDMHSNRINGSIP-LEIGNFNFLQVLDLSYNKLEG--PIPSTIASLVNLTSLFLCNNSQTGFIPST-LGHLN 406 (560)
Q Consensus 331 ~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~n~l~~~~~~~-~~~~~ 406 (560)
.++.+|+.+.+.++.+..... .....|++++.|+++.|-+.. .+......+|+|+.|+++.|.+....... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 467788888888887762221 356678899999999987754 23345567889999999998776433221 23567
Q ss_pred CCCEEECcCCccccc-CCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccC-chhhhcCCCCCeee
Q 038187 407 RLTSLDLSGNNLVGP-IPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPI-PPQLLNCSRLRALS 484 (560)
Q Consensus 407 ~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~ 484 (560)
.|+.|.++.|.++.. +......+|+|+.|.+.+|..-..-......++.|++|+|++|++.+.. -...+.++.|+.|.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 888889998887632 2233456788899999888533333344456678888888888876432 13466788888888
Q ss_pred CccCccccc-Chhh-----hhcCcCCCeeeCcCCcCccccC--ccCCCCCCCCEEeCCCCcCcc
Q 038187 485 LSNNLLSGS-IPSE-----IGKLKELYYLDLSQNFINGKIP--SQLGEIPSIDTVNLCTNNLYG 540 (560)
Q Consensus 485 Ls~n~l~~~-~p~~-----l~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~ls~n~l~~ 540 (560)
++.|.++.. +|.. ...+++|++|++..|++. .++ ..+..+++|+.+..-.|.++.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhcccccccc
Confidence 888877642 2222 345688888888888885 233 345556677777777777764
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2e-11 Score=117.50 Aligned_cols=210 Identities=20% Similarity=0.222 Sum_probs=152.7
Q ss_pred CCCCCCCEEEccCCcCcccCC-ccccCCCCCCEEEccCCccccc--CCcCccCCCCCCEEEeecCcCcCCCchh-ccCCC
Q 038187 307 GHLNRLTSLDLSGNNLVGPIP-SSMGHLARLTTFDMHSNRINGS--IPLEIGNFNFLQVLDLSYNKLEGPIPST-IASLV 382 (560)
Q Consensus 307 ~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~-l~~~~ 382 (560)
+++.+|+.+.+.++....... .....+++++.|+++.|-+..- +......+|+|+.|+++.|++....... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 357789999999887653211 3567899999999999988642 2234567899999999999886433221 22578
Q ss_pred CCCEEeccCCccccc-CcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccC-CccccCCCCCCeee
Q 038187 383 NLTSLFLCNNSQTGF-IPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSI-PLEIGNLKHVEDVY 460 (560)
Q Consensus 383 ~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~ 460 (560)
.|+.|.++.|.++.. +......+|+|+.|++..|.....-......+..|+.|||++|++...- ....+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 999999999998843 3333467899999999999532232333445778999999999887321 24467889999999
Q ss_pred cccCccccc-Cchh-----hhcCCCCCeeeCccCcccccCh--hhhhcCcCCCeeeCcCCcCccc
Q 038187 461 LFNNKLDGP-IPPQ-----LLNCSRLRALSLSNNLLSGSIP--SEIGKLKELYYLDLSQNFINGK 517 (560)
Q Consensus 461 l~~n~l~~~-~~~~-----l~~~~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~ 517 (560)
++.|.+... .|+. ....++|+.|+++.|++.. ++ ..+..+++|+.|.+..|.++.+
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCcccc-ccccchhhccchhhhhhccccccccc
Confidence 999998753 3333 3567899999999999962 33 3556678888899888888643
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.03 E-value=1.2e-10 Score=102.53 Aligned_cols=109 Identities=37% Similarity=0.424 Sum_probs=31.1
Q ss_pred cCCCCCccEEECcCCCCCCcCccccC-CCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccC-CCCCC
Q 038187 114 MGRLRNLVHLDLSDNYIEGYILPTLG-HLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEI-ENLNF 191 (560)
Q Consensus 114 l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l-~~l~~ 191 (560)
+.+...+++|+|++|.++. .+.++ .+.+|+.|++++|.++.. +.+..+++|++|++++|+++.. ...+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred ccccccccccccccccccc--ccchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCc
Confidence 4455567777777777664 23444 466777777777777632 2466677777777777777633 2223 34677
Q ss_pred CCEEEcccCCCCcc-CccccCCCCCCCEEeCCCCccc
Q 038187 192 LQVLDLSRNEIGGS-IPSTLGHLKRLRSLDLSLNELV 227 (560)
Q Consensus 192 L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~L~~n~l~ 227 (560)
|++|++++|.+... .-..++.+++|++|++.+|.++
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 77777777766532 1133455666666666666655
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.02 E-value=6.2e-11 Score=108.61 Aligned_cols=129 Identities=27% Similarity=0.246 Sum_probs=68.8
Q ss_pred CCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeec
Q 038187 382 VNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYL 461 (560)
Q Consensus 382 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 461 (560)
..|+++|+++|.++. +.+++.-.|+++.|+++.|.+... +.+..+++|+.||+++|.++ .+..+-..+.+++.|.+
T Consensus 284 q~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchhh-hhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 445555555555542 233444455556666666655422 12455556666666666555 23333334455566666
Q ss_pred ccCcccccCchhhhcCCCCCeeeCccCcccccC-hhhhhcCcCCCeeeCcCCcCcc
Q 038187 462 FNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSI-PSEIGKLKELYYLDLSQNFING 516 (560)
Q Consensus 462 ~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~ 516 (560)
++|.+... ..++.+-+|..||+++|+|...- ...|++++-|+.+.|.+|++.+
T Consensus 360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 66665432 34555566666666666665321 2346666666666666666653
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=2.6e-10 Score=100.35 Aligned_cols=104 Identities=34% Similarity=0.497 Sum_probs=23.1
Q ss_pred CCCEEeccCCcccccCccccc-CCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccc-cCCCCCCeee
Q 038187 383 NLTSLFLCNNSQTGFIPSTLG-HLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEI-GNLKHVEDVY 460 (560)
Q Consensus 383 ~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~ 460 (560)
.+++|++.+|.++.. +.++ .+.+|+.|++++|.++. +. .+..++.|++|++++|+++. +...+ ..+++|++|+
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEE
Confidence 445555555555432 2233 24455555555555542 21 34444555555555555542 22222 2344555555
Q ss_pred cccCccccc-CchhhhcCCCCCeeeCccCccc
Q 038187 461 LFNNKLDGP-IPPQLLNCSRLRALSLSNNLLS 491 (560)
Q Consensus 461 l~~n~l~~~-~~~~l~~~~~L~~L~Ls~n~l~ 491 (560)
+++|++... .-..+..+++|+.|++.+|+++
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 555554431 1123344445555555555444
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.81 E-value=4.4e-10 Score=115.33 Aligned_cols=245 Identities=25% Similarity=0.301 Sum_probs=104.3
Q ss_pred CCCCCEEECcCCCCcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEE
Q 038187 261 FNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFD 340 (560)
Q Consensus 261 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 340 (560)
+..++.+.+..|.+.. +-..+..+++|+.+++.+|.+..... .+..+++|++|++++|.++... .+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhhe
Confidence 3444444455554442 22224444555555555555543211 1344455555555555544321 133344445555
Q ss_pred ccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCc-ccccCCCCCCEEECcCCccc
Q 038187 341 MHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIP-STLGHLNRLTSLDLSGNNLV 419 (560)
Q Consensus 341 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~ 419 (560)
+++|.+... ..+..++ .|+.+++++|.+...-+ . ...+.+++.+++.+|.+.
T Consensus 147 l~~N~i~~~--~~~~~l~------------------------~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLK------------------------SLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred eccCcchhc--cCCccch------------------------hhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 555544411 1222344 44444444444443322 1 234445555555555443
Q ss_pred ccCCccccCCCCCCEEEccCCcCcccCCccccCCC--CCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhh
Q 038187 420 GPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLK--HVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSE 497 (560)
Q Consensus 420 ~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~ 497 (560)
.. .++..+..+..+++..|.++..-+ +..+. +|+.+++++|++.. .+..+..+..+..+++.+|++... ..
T Consensus 200 ~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~ 272 (414)
T KOG0531|consen 200 EI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EG 272 (414)
T ss_pred cc--cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--cc
Confidence 11 122222333333444444442111 11111 25555555555552 223444555555666665555532 22
Q ss_pred hhcCcCCCeeeCcCCcCccc--c-Ccc-CCCCCCCCEEeCCCCcCccccC
Q 038187 498 IGKLKELYYLDLSQNFINGK--I-PSQ-LGEIPSIDTVNLCTNNLYGSIP 543 (560)
Q Consensus 498 l~~l~~L~~L~L~~n~l~~~--~-p~~-l~~l~~L~~L~ls~n~l~~~ip 543 (560)
+.....+..+....|.+... + ... ....+.+....+.+|......+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 273 LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 33334444455555544321 1 111 3344555555555555554443
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.74 E-value=6e-09 Score=75.27 Aligned_cols=61 Identities=34% Similarity=0.523 Sum_probs=43.2
Q ss_pred CCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCccccCccCCCCCCCCEEeCCCCcC
Q 038187 478 SRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNL 538 (560)
Q Consensus 478 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l 538 (560)
++|++|++++|+++...+..|..+++|++|++++|+++..-|..|..+++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3567777777777755556677777777777777777766666777777777777777764
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.71 E-value=1.2e-09 Score=112.19 Aligned_cols=247 Identities=29% Similarity=0.323 Sum_probs=176.2
Q ss_pred cCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCCcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCE
Q 038187 235 GHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTS 314 (560)
Q Consensus 235 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 314 (560)
..+..++.+.+..|.+.. +-..+..+++|+.|++.+|.+... ...+..+++|+.|++++|.++.. ..+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhh
Confidence 456777777888888763 345578899999999999999843 33367789999999999999865 34677888999
Q ss_pred EEccCCcCcccCCccccCCCCCCEEEccCCcccccCC-cCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCc
Q 038187 315 LDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIP-LEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNS 393 (560)
Q Consensus 315 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 393 (560)
|++.+|.+... ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+... ..+..+..+..+++..|.
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNK 219 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccc
Confidence 99999999743 336669999999999999985443 2 46788899999999988633 223334455555777887
Q ss_pred ccccCcccccCCCC--CCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCccccc--
Q 038187 394 QTGFIPSTLGHLNR--LTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGP-- 469 (560)
Q Consensus 394 l~~~~~~~~~~~~~--L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-- 469 (560)
++..-+ +..... |+.+++++|++. ..+..+..+..+..+++.+|++...- .+...+.+..+....+++...
T Consensus 220 i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 294 (414)
T KOG0531|consen 220 ISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEA 294 (414)
T ss_pred ceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhh
Confidence 775422 222333 888999999887 44456677888889999888876322 234455666777777776522
Q ss_pred -Cchh-hhcCCCCCeeeCccCcccccCh
Q 038187 470 -IPPQ-LLNCSRLRALSLSNNLLSGSIP 495 (560)
Q Consensus 470 -~~~~-l~~~~~L~~L~Ls~n~l~~~~p 495 (560)
.... ....+.++.+.+..|.+....+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 295 ISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred hhccccccccccccccccccCccccccc
Confidence 1111 4456778888888887765544
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.68 E-value=1.2e-08 Score=73.77 Aligned_cols=59 Identities=34% Similarity=0.486 Sum_probs=28.7
Q ss_pred CccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCc
Q 038187 119 NLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQ 177 (560)
Q Consensus 119 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 177 (560)
+|++|++++|.++...+..|.++++|++|++++|.+....+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555544444444555555555555554444444444444445554444443
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.39 E-value=5.7e-09 Score=106.66 Aligned_cols=126 Identities=30% Similarity=0.301 Sum_probs=55.3
Q ss_pred CCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCcc-ccCCCCCCEEEc
Q 038187 359 FLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSS-VGHLTQLTTFDM 437 (560)
Q Consensus 359 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~l 437 (560)
.|...+.+.|.+. .+...+.-++.++.|+|++|+++.. +.+..+++|+.|||+.|.+. .+|.. ...+ .|+.|++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeee
Confidence 3444555555544 2333444445555555555555533 24444555555555555554 22221 1112 2555555
Q ss_pred cCCcCcccCCccccCCCCCCeeecccCcccccC-chhhhcCCCCCeeeCccCccc
Q 038187 438 HSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPI-PPQLLNCSRLRALSLSNNLLS 491 (560)
Q Consensus 438 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~Ls~n~l~ 491 (560)
++|.++.. ..+.++++|+.||+++|-+.+.- -..+..+..|+.|.|.+|.+-
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 55544411 12334445555555555444321 011233344455555555444
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.33 E-value=1.2e-08 Score=104.40 Aligned_cols=197 Identities=26% Similarity=0.331 Sum_probs=93.6
Q ss_pred CCCCCEEEccCCcccccC-CcCccCCCCCCEEEeecCcCcCCCchhccCC-CCCCEEeccCCccc----------ccCcc
Q 038187 333 LARLTTFDMHSNRINGSI-PLEIGNFNFLQVLDLSYNKLEGPIPSTIASL-VNLTSLFLCNNSQT----------GFIPS 400 (560)
Q Consensus 333 l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~-~~L~~L~l~~n~l~----------~~~~~ 400 (560)
+++++.+.+-.-.-.+.. |-.+..+.+|++|.+.+|.+... ..+..+ ..|++|.- .|.+. |.+..
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~n 159 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISN 159 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhh-hccHHHHHHHHHHhcccccc
Confidence 344455544433222222 55667788999999999887531 111110 12222211 11111 11110
Q ss_pred cccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCC
Q 038187 401 TLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRL 480 (560)
Q Consensus 401 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L 480 (560)
.+ ...+|...+.+.|.++ .+...+.-++.|+.|+|++|+++..- .+..|+.|+.|||++|.+....--....|. |
T Consensus 160 s~-~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L 234 (1096)
T KOG1859|consen 160 SP-VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-L 234 (1096)
T ss_pred ch-hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-h
Confidence 00 0123455555555554 34444555556666666666665322 445556666666666665522111222233 6
Q ss_pred CeeeCccCcccccChhhhhcCcCCCeeeCcCCcCccccC-ccCCCCCCCCEEeCCCCcCc
Q 038187 481 RALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFINGKIP-SQLGEIPSIDTVNLCTNNLY 539 (560)
Q Consensus 481 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~ls~n~l~ 539 (560)
+.|.+++|.++.. ..+.++++|+.||+++|-+.+.-. +-+..+..|+.|+|.+|++-
T Consensus 235 ~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 235 QLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 6666666655522 235555666666666665554321 12334445556666666553
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=2.7e-09 Score=98.03 Aligned_cols=85 Identities=29% Similarity=0.333 Sum_probs=43.8
Q ss_pred CccEEECcCCCCCCc-CccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCc-CCc-CCcccCCCCCCCCEE
Q 038187 119 NLVHLDLSDNYIEGY-ILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQ-INS-SIPLEIENLNFLQVL 195 (560)
Q Consensus 119 ~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~-~~~-~~~~~l~~l~~L~~L 195 (560)
.|+++||++..++.. ....+..|.+|+.|.|.++.+.+.+...+.+-.+|+.|+++.+. ++. .....+.+|+.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 356666666555432 22234555666666666666665555555555666666665543 211 111123455555555
Q ss_pred EcccCCCC
Q 038187 196 DLSRNEIG 203 (560)
Q Consensus 196 ~l~~n~~~ 203 (560)
+++.|.+.
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 55555444
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.6e-08 Score=92.97 Aligned_cols=177 Identities=26% Similarity=0.253 Sum_probs=104.7
Q ss_pred CCCCEEEccCCccccc-CCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCc-ccccC-cccccCCCCCCE
Q 038187 334 ARLTTFDMHSNRINGS-IPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNS-QTGFI-PSTLGHLNRLTS 410 (560)
Q Consensus 334 ~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~-l~~~~-~~~~~~~~~L~~ 410 (560)
+.|+++|++...++.. .-..+..|.+|+.|.+.++.+.+.+...+....+|+.++++.|. ++... .-.+..|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3578888888777632 22235677888888888888888888888888888888888764 33221 123467778888
Q ss_pred EECcCCcccccCC-ccccC-CCCCCEEEccCCcCc--c-cCCccccCCCCCCeeecccCc-ccccCchhhhcCCCCCeee
Q 038187 411 LDLSGNNLVGPIP-SSVGH-LTQLTTFDMHSNRIN--G-SIPLEIGNLKHVEDVYLFNNK-LDGPIPPQLLNCSRLRALS 484 (560)
Q Consensus 411 L~L~~n~l~~~~p-~~~~~-l~~L~~L~l~~n~l~--~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~~~~L~~L~ 484 (560)
|+|+.|.++...- ..+.+ -++|+.|+++|+.-. . .+..-...+++|..|||++|. ++......+..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 8888876543221 11111 246777777766321 0 111223456666666666653 3333334455566666666
Q ss_pred CccCcccccChhh---hhcCcCCCeeeCcCC
Q 038187 485 LSNNLLSGSIPSE---IGKLKELYYLDLSQN 512 (560)
Q Consensus 485 Ls~n~l~~~~p~~---l~~l~~L~~L~L~~n 512 (560)
++.|..- +|+. +...++|.+|++.++
T Consensus 345 lsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 6666432 3432 334566666666555
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.27 E-value=7e-08 Score=78.65 Aligned_cols=112 Identities=24% Similarity=0.295 Sum_probs=51.0
Q ss_pred CCCEEEccCCcCcccCCcccc-CCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeC
Q 038187 431 QLTTFDMHSNRINGSIPLEIG-NLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDL 509 (560)
Q Consensus 431 ~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 509 (560)
.|+..++++|.+. .+|..|. ..+.++.+++++|+++ .+|+.+..++.|+.|+++.|.+. ..|..+..+.++-.|+.
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 3444455555544 2333222 2234555555555555 34444555555555555555555 34444444555555555
Q ss_pred cCCcCccccCccCCCCCCCCEEeCCCCcCccccCccC
Q 038187 510 SQNFINGKIPSQLGEIPSIDTVNLCTNNLYGSIPESL 546 (560)
Q Consensus 510 ~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ip~~~ 546 (560)
.+|.+. +||..+-.-...-..++.++++.+.-|..+
T Consensus 131 ~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~kl 166 (177)
T KOG4579|consen 131 PENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKL 166 (177)
T ss_pred CCCccc-cCcHHHhccccHHHHHhcCCcccccCcccc
Confidence 555444 333332222222333445555554444433
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.27 E-value=6.1e-08 Score=79.01 Aligned_cols=140 Identities=19% Similarity=0.181 Sum_probs=104.4
Q ss_pred CCCEEeccCCcccccCcc---cccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCee
Q 038187 383 NLTSLFLCNNSQTGFIPS---TLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDV 459 (560)
Q Consensus 383 ~L~~L~l~~n~l~~~~~~---~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 459 (560)
.+-.+++++|++.. ++. .+.....|+..+|++|.+....+..-..++.++.+++++|+++ .+|..+..++.|+.|
T Consensus 28 E~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhH-HHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 45667888887652 222 3345567788899999998443333456779999999999999 788889999999999
Q ss_pred ecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCccccCccCCCCC
Q 038187 460 YLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFINGKIPSQLGEIP 526 (560)
Q Consensus 460 ~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 526 (560)
+++.|++. ..|..+..+.++-.||..+|... .+|..+-.-...-..++.++.+.+.-+..++.+.
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klqa~k 170 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQALK 170 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccccccC
Confidence 99999998 56777777889999999999988 6666554434444556778888877776655543
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=2.4e-07 Score=85.41 Aligned_cols=64 Identities=19% Similarity=0.191 Sum_probs=34.5
Q ss_pred CCCCCEEEeecCcCcCCC-chhccCCCCCCEEeccCCccccc-CcccccCCCCCCEEECcCCcccc
Q 038187 357 FNFLQVLDLSYNKLEGPI-PSTIASLVNLTSLFLCNNSQTGF-IPSTLGHLNRLTSLDLSGNNLVG 420 (560)
Q Consensus 357 l~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~ 420 (560)
+|++..+.+..|.+...- .+....+|.+.-|+++.+++..- ....+..++.|..|.++++++.+
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 456666666666554321 12334455555666666665532 12344556666667776666543
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.20 E-value=1.1e-07 Score=86.48 Aligned_cols=241 Identities=21% Similarity=0.181 Sum_probs=117.9
Q ss_pred cCCCCCccEEECcCCCCCCc----CccccCCCCCCCEEECCCCCC---CCCCCcCCCCCCCCCEEeCcCCcCCcCCcccC
Q 038187 114 MGRLRNLVHLDLSDNYIEGY----ILPTLGHLSKLENLNLSSNAL---DGNIPSTLGHLTRLTTLAIASNQINSSIPLEI 186 (560)
Q Consensus 114 l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~~---~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l 186 (560)
+..+..++.++||+|.|... +...+.+-.+|++.+++.--. ...+++.+. .+...+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~-----------------~Ll~aL 88 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLV-----------------MLLKAL 88 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHH-----------------HHHHHH
Confidence 44466777777777777543 334455566666666665311 111121110 001123
Q ss_pred CCCCCCCEEEcccCCCCccCccc----cCCCCCCCEEeCCCCccccc----CC---------ccccCCCCCCEEEeecCc
Q 038187 187 ENLNFLQVLDLSRNEIGGSIPST----LGHLKRLRSLDLSLNELVGP----IP---------SSLGHLTELTFFNIYSNR 249 (560)
Q Consensus 187 ~~l~~L~~L~l~~n~~~~~~~~~----l~~l~~L~~L~L~~n~l~~~----~~---------~~l~~l~~L~~L~l~~n~ 249 (560)
.+||+|+..+|++|.+....|+. +++-+.|++|.+++|.+... +. .-..+-+.|+......|+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 34455555555555444433322 23444555555555543211 10 011234566666666666
Q ss_pred CCccCcc----cccCCCCCCEEECcCCCCcCCccc-----cccCCCCCCEEECcCCCCcccc----CcccCCCCCCCEEE
Q 038187 250 INGSIPL----EIGNFNFLQVLDLSYNKLEGPIPS-----TIANLVNLTSLFLCNNSQTGFI----PSTLGHLNRLTSLD 316 (560)
Q Consensus 250 ~~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~~-----~l~~l~~L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~ 316 (560)
+..-... .+..-..|+++.+.+|.+...... .+..+.+|+.||++.|.++... ...+..++.|+.|.
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 5421111 122334666666766665422111 1234566777777777665322 23344556677777
Q ss_pred ccCCcCcccCCcc----c--cCCCCCCEEEccCCcccccCCcC-------ccCCCCCCEEEeecCcCc
Q 038187 317 LSGNNLVGPIPSS----M--GHLARLTTFDMHSNRINGSIPLE-------IGNFNFLQVLDLSYNKLE 371 (560)
Q Consensus 317 l~~n~~~~~~~~~----~--~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~L~~L~l~~n~~~ 371 (560)
+..|-++...... | ...|+|..|...+|...+.+... -...|-|..|.+.+|++.
T Consensus 249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred ccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 7776654322111 1 13466777777776655433211 124566777777777765
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.20 E-value=1.9e-07 Score=85.01 Aligned_cols=215 Identities=20% Similarity=0.176 Sum_probs=97.7
Q ss_pred ccCCCCCCEEECcCCCCccccCcc----cCCCCCCCEEEccCCcC---cccCCc-------cccCCCCCCEEEccCCccc
Q 038187 282 IANLVNLTSLFLCNNSQTGFIPST----LGHLNRLTSLDLSGNNL---VGPIPS-------SMGHLARLTTFDMHSNRIN 347 (560)
Q Consensus 282 l~~l~~L~~L~l~~n~~~~~~~~~----l~~l~~L~~L~l~~n~~---~~~~~~-------~~~~l~~L~~L~l~~n~l~ 347 (560)
+..+..++.+++++|.+......+ +.+-.+|+..+++.--. ...+++ .+-.||.|+..++++|.|.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 334667777777777765443333 33445666666554211 111111 2234455555555555554
Q ss_pred ccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCccccc----Ccc---------cccCCCCCCEEECc
Q 038187 348 GSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGF----IPS---------TLGHLNRLTSLDLS 414 (560)
Q Consensus 348 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~----~~~---------~~~~~~~L~~L~L~ 414 (560)
...|+.+. +.+..-+.|++|.+++|.+... +.. ....-|.|+++...
T Consensus 106 ~~~~e~L~--------------------d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 106 SEFPEELG--------------------DLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred cccchHHH--------------------HHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 44333221 1223334444444444433211 100 01123555566655
Q ss_pred CCcccccCCcc-----ccCCCCCCEEEccCCcCccc-----CCccccCCCCCCeeecccCccccc----CchhhhcCCCC
Q 038187 415 GNNLVGPIPSS-----VGHLTQLTTFDMHSNRINGS-----IPLEIGNLKHVEDVYLFNNKLDGP----IPPQLLNCSRL 480 (560)
Q Consensus 415 ~n~l~~~~p~~-----~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~~~~L 480 (560)
.|++. ..|.. +..-..|+.+.+..|.|... +-..+..+.+|+.|++.+|.++.. +...+..++.|
T Consensus 166 rNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 166 RNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred cchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 55543 11111 11113556666666555421 111223455666666666655432 22233445556
Q ss_pred CeeeCccCcccccChhhhh------cCcCCCeeeCcCCcCccc
Q 038187 481 RALSLSNNLLSGSIPSEIG------KLKELYYLDLSQNFINGK 517 (560)
Q Consensus 481 ~~L~Ls~n~l~~~~p~~l~------~l~~L~~L~L~~n~l~~~ 517 (560)
++|.+..|-++......+- ..++|+.|-..+|.+.|.
T Consensus 245 rEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 245 RELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred hhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence 6666666655544333221 145666666666655443
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=1.2e-06 Score=80.92 Aligned_cols=62 Identities=34% Similarity=0.360 Sum_probs=29.2
Q ss_pred CCCCCEEeCcCCcCCc--CCcccCCCCCCCCEEEcccCCCCccCccccCCCCCCCEEeCCCCcc
Q 038187 165 LTRLTTLAIASNQINS--SIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNEL 226 (560)
Q Consensus 165 l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l 226 (560)
+..++.+||.+|.++. .+...+.++|.|++|+++.|.+...+-..-....+|+.|.|.+..+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL 133 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence 4555566666665542 2223344555555555555555432211112334555555554443
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.93 E-value=2.7e-05 Score=77.28 Aligned_cols=75 Identities=19% Similarity=0.290 Sum_probs=43.3
Q ss_pred cCCCCCCEEEccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCE
Q 038187 331 GHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTS 410 (560)
Q Consensus 331 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 410 (560)
..+.+++.|++++|.++ .+|. -.++|+.|.+++|.-...+|..+ .++|++|++++|.....+| ++|+.
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~ 116 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVRS 116 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccce
Confidence 34577888888887666 4451 22457788877764444555433 2467777777763222333 34566
Q ss_pred EECcCCc
Q 038187 411 LDLSGNN 417 (560)
Q Consensus 411 L~L~~n~ 417 (560)
|++.++.
T Consensus 117 L~L~~n~ 123 (426)
T PRK15386 117 LEIKGSA 123 (426)
T ss_pred EEeCCCC
Confidence 6665544
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=9.7e-06 Score=53.52 Aligned_cols=36 Identities=42% Similarity=0.614 Sum_probs=16.3
Q ss_pred CCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCc
Q 038187 479 RLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFIN 515 (560)
Q Consensus 479 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 515 (560)
+|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3445555555555 33434444555555555555444
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.88 E-value=3.4e-05 Score=76.56 Aligned_cols=136 Identities=20% Similarity=0.278 Sum_probs=86.2
Q ss_pred hccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCC-cCcccCCccccCCCC
Q 038187 377 TIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSN-RINGSIPLEIGNLKH 455 (560)
Q Consensus 377 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~ 455 (560)
.+..+.+++.|++++|.++. +| . -.++|+.|.+++|.-...+|+.+ .++|++|++++| .+. .+|. +
T Consensus 47 r~~~~~~l~~L~Is~c~L~s-LP-~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------s 113 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIES-LP-V--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------S 113 (426)
T ss_pred HHHHhcCCCEEEeCCCCCcc-cC-C--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------c
Confidence 34557899999999997764 34 1 23479999999876444677655 368999999998 443 4553 4
Q ss_pred CCeeecccCccc--ccCchhhhcCCCCCeeeCccCc-cc-ccChhhhhcCcCCCeeeCcCCcCccccCccCCCCCCCCEE
Q 038187 456 VEDVYLFNNKLD--GPIPPQLLNCSRLRALSLSNNL-LS-GSIPSEIGKLKELYYLDLSQNFINGKIPSQLGEIPSIDTV 531 (560)
Q Consensus 456 L~~L~l~~n~l~--~~~~~~l~~~~~L~~L~Ls~n~-l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 531 (560)
|+.|++.++... +.+|. +|+.|.+.+++ .. ..+|..+. ++|++|++++|... .+|..+. .+|+.|
T Consensus 114 Le~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i-~LP~~LP--~SLk~L 182 (426)
T PRK15386 114 VRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLIS--PSLKTLSLTGCSNI-ILPEKLP--ESLQSI 182 (426)
T ss_pred cceEEeCCCCCcccccCcc------hHhheeccccccccccccccccC--CcccEEEecCCCcc-cCccccc--ccCcEE
Confidence 677777766543 23443 46677765432 11 11121111 57888888888755 3444333 468888
Q ss_pred eCCCC
Q 038187 532 NLCTN 536 (560)
Q Consensus 532 ~ls~n 536 (560)
+++.+
T Consensus 183 ~ls~n 187 (426)
T PRK15386 183 TLHIE 187 (426)
T ss_pred Eeccc
Confidence 88776
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.75 E-value=9.6e-06 Score=87.28 Aligned_cols=136 Identities=24% Similarity=0.261 Sum_probs=69.5
Q ss_pred CCCCEEeccCCcccc-cCcccc-cCCCCCCEEECcCCcccc-cCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCe
Q 038187 382 VNLTSLFLCNNSQTG-FIPSTL-GHLNRLTSLDLSGNNLVG-PIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVED 458 (560)
Q Consensus 382 ~~L~~L~l~~n~l~~-~~~~~~-~~~~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 458 (560)
.+|++|++++..... .-|..+ ..+|+|+.|.+++-.+.. ..-....++|+|..||+++++++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 456666666643221 111222 235667777776654432 1222334566777777777666522 44566666666
Q ss_pred eecccCcccc-cCchhhhcCCCCCeeeCccCccccc--Chh----hhhcCcCCCeeeCcCCcCccccC
Q 038187 459 VYLFNNKLDG-PIPPQLLNCSRLRALSLSNNLLSGS--IPS----EIGKLKELYYLDLSQNFINGKIP 519 (560)
Q Consensus 459 L~l~~n~l~~-~~~~~l~~~~~L~~L~Ls~n~l~~~--~p~----~l~~l~~L~~L~L~~n~l~~~~p 519 (560)
|.+.+=.+.. ..-..+.++++|+.||+|....... +.. .-..++.|+.||.++..+.+.+-
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~l 267 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEIL 267 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHH
Confidence 6666555543 1223455566666777666543321 111 11125566666666665555433
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.74 E-value=2.7e-05 Score=51.40 Aligned_cols=36 Identities=39% Similarity=0.671 Sum_probs=20.5
Q ss_pred CCCeeeCcCCcCccccCccCCCCCCCCEEeCCCCcCc
Q 038187 503 ELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLY 539 (560)
Q Consensus 503 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~ 539 (560)
+|++|++++|+|+ .+|..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4566666666666 35555666666666666666655
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.74 E-value=6.6e-06 Score=88.52 Aligned_cols=134 Identities=28% Similarity=0.325 Sum_probs=76.5
Q ss_pred CCccEEECcCCC-CCCcCccccC-CCCCCCEEECCCCCCCCC-CCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCE
Q 038187 118 RNLVHLDLSDNY-IEGYILPTLG-HLSKLENLNLSSNALDGN-IPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQV 194 (560)
Q Consensus 118 ~~L~~L~L~~n~-l~~~~~~~l~-~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 194 (560)
.+|++||+++.. +....+..++ .+|.|+.|.+++-.+... .-.-..++|+|+.||+++++++.. ..++++++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 367777777653 3333344443 467777777777655422 122335677777777777777533 45677777777
Q ss_pred EEcccCCCCc-cCccccCCCCCCCEEeCCCCcccccC--C----ccccCCCCCCEEEeecCcCCcc
Q 038187 195 LDLSRNEIGG-SIPSTLGHLKRLRSLDLSLNELVGPI--P----SSLGHLTELTFFNIYSNRINGS 253 (560)
Q Consensus 195 L~l~~n~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--~----~~l~~l~~L~~L~l~~n~~~~~ 253 (560)
|.+.+=.+.. ..-..+.++++|+.||++........ . +.-..+|+|+.||.+++.+...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 7777655553 12234566777777777765433211 0 1112356666666666555433
No 59
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=97.67 E-value=2.1e-05 Score=51.84 Aligned_cols=36 Identities=39% Similarity=0.762 Sum_probs=23.2
Q ss_pred HHHHHHHHcCCCCCCC---CC-CCCCCC--CCCccccceecC
Q 038187 43 QLERKALLGTGWWVNN---GA-TSGNYT--SNHCKWTGISCN 78 (560)
Q Consensus 43 ~~~~~~ll~~~~~~~~---~~-~~~~~~--~~~C~w~gv~C~ 78 (560)
+.|++||++++..... +. .+|... .+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 5789999988654432 33 344444 799999999995
No 60
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.55 E-value=1.6e-06 Score=83.81 Aligned_cols=83 Identities=16% Similarity=0.059 Sum_probs=43.7
Q ss_pred CCCCEEeCcCCcCCcCCc--ccCCCCCCCCEEEcccCCCCc-cCcccc-CCCCCCCEEeCCCCc-ccccCCc-cccCCCC
Q 038187 166 TRLTTLAIASNQINSSIP--LEIENLNFLQVLDLSRNEIGG-SIPSTL-GHLKRLRSLDLSLNE-LVGPIPS-SLGHLTE 239 (560)
Q Consensus 166 ~~L~~L~L~~n~~~~~~~--~~l~~l~~L~~L~l~~n~~~~-~~~~~l-~~l~~L~~L~L~~n~-l~~~~~~-~l~~l~~ 239 (560)
..|+.|.+.+++-.+.-+ ..-.+++++++|.+.++.... ..-..+ ..+++|++|++..|. ++...-+ ....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 357778888776443222 233567888888777775221 111111 346777777776643 3322222 1234555
Q ss_pred CCEEEeecC
Q 038187 240 LTFFNIYSN 248 (560)
Q Consensus 240 L~~L~l~~n 248 (560)
|++++++++
T Consensus 218 L~~lNlSwc 226 (483)
T KOG4341|consen 218 LKYLNLSWC 226 (483)
T ss_pred HHHhhhccC
Confidence 555555554
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.41 E-value=0.00029 Score=61.94 Aligned_cols=103 Identities=26% Similarity=0.240 Sum_probs=50.3
Q ss_pred CCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEcccCCCCcc-CccccCCCCCCCEEeC
Q 038187 143 KLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGS-IPSTLGHLKRLRSLDL 221 (560)
Q Consensus 143 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~L 221 (560)
+...+||++|.+.. .+.|..+++|.+|.+++|+++.+-|.--.-+++|+.|.+.+|.+... .-+.+..+|+|++|.+
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 34455566655542 23455556666666666666644443333445566666666655421 0122445555666655
Q ss_pred CCCcccccCC---ccccCCCCCCEEEeec
Q 038187 222 SLNELVGPIP---SSLGHLTELTFFNIYS 247 (560)
Q Consensus 222 ~~n~l~~~~~---~~l~~l~~L~~L~l~~ 247 (560)
-+|.++..-- -.+..+++|+.||+..
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 5555432110 1233445555555443
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.40 E-value=0.00023 Score=62.58 Aligned_cols=107 Identities=27% Similarity=0.282 Sum_probs=81.7
Q ss_pred CCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCc-ccCCCCCCCCEEE
Q 038187 118 RNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIP-LEIENLNFLQVLD 196 (560)
Q Consensus 118 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~ 196 (560)
.+...+||++|.+.. .+.|..++.|..|.+.+|+++.+.|.--.-+++|..|.|.+|++..... .-+..||.|++|.
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 356788999998765 4567888999999999999997766655667889999999998763211 2356789999999
Q ss_pred cccCCCCccC---ccccCCCCCCCEEeCCCCcc
Q 038187 197 LSRNEIGGSI---PSTLGHLKRLRSLDLSLNEL 226 (560)
Q Consensus 197 l~~n~~~~~~---~~~l~~l~~L~~L~L~~n~l 226 (560)
+-+|.++..- -..+..+|+|+.||+..-..
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 9999877432 12467789999999986543
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.39 E-value=0.00058 Score=57.56 Aligned_cols=83 Identities=14% Similarity=0.198 Sum_probs=30.7
Q ss_pred cCCCCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCC
Q 038187 114 MGRLRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQ 193 (560)
Q Consensus 114 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 193 (560)
|..+++|+.+.+.. .+.......|..+++|+.+.+..+ +.......|.+++.|+.+.+.. .+.......|.++++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 44555555555543 333333344555555555555443 3323333444444455555533 22212223344445555
Q ss_pred EEEccc
Q 038187 194 VLDLSR 199 (560)
Q Consensus 194 ~L~l~~ 199 (560)
.+++..
T Consensus 85 ~i~~~~ 90 (129)
T PF13306_consen 85 NIDIPS 90 (129)
T ss_dssp EEEETT
T ss_pred ccccCc
Confidence 555443
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.37 E-value=0.00056 Score=57.65 Aligned_cols=106 Identities=16% Similarity=0.210 Sum_probs=43.9
Q ss_pred cccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEcccCCCCccCccccCCCCC
Q 038187 136 PTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKR 215 (560)
Q Consensus 136 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 215 (560)
.+|.++++|+.+.+.. .+.......|.++++|+.+.+..+ +.......|.++++++.+.+.+ .+.......|..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3456666666666653 344344445666666666666553 3333334455565666666644 232223334445556
Q ss_pred CCEEeCCCCcccccCCccccCCCCCCEEEee
Q 038187 216 LRSLDLSLNELVGPIPSSLGHLTELTFFNIY 246 (560)
Q Consensus 216 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 246 (560)
|+.+++..+ +.......|.++ +|+.+.+.
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 666655443 332223344444 55555443
No 65
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.28 E-value=4.3e-06 Score=80.97 Aligned_cols=107 Identities=18% Similarity=0.158 Sum_probs=64.5
Q ss_pred CCCCEEECCCCCCCCCCC--cCCCCCCCCCEEeCcCCcCC-cCCcccC-CCCCCCCEEEcccC-CCCccCcc-ccCCCCC
Q 038187 142 SKLENLNLSSNALDGNIP--STLGHLTRLTTLAIASNQIN-SSIPLEI-ENLNFLQVLDLSRN-EIGGSIPS-TLGHLKR 215 (560)
Q Consensus 142 ~~L~~L~L~~n~~~~~~~--~~~~~l~~L~~L~L~~n~~~-~~~~~~l-~~l~~L~~L~l~~n-~~~~~~~~-~l~~l~~ 215 (560)
..||.|.++++.-.+.-+ ..-.+++++++|++.++... ...-..+ ..|++|++|++..| .++..... -...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 468888898875443221 22367899999999988732 1111112 46899999999885 34433222 2245899
Q ss_pred CCEEeCCCCc-cccc-CCccccCCCCCCEEEeecC
Q 038187 216 LRSLDLSLNE-LVGP-IPSSLGHLTELTFFNIYSN 248 (560)
Q Consensus 216 L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L~l~~n 248 (560)
|++|+++.+. +++. +-....+++.++.+.+.+|
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC 252 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC 252 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhccc
Confidence 9999999886 3331 1122334555555555443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.12 E-value=0.00019 Score=65.80 Aligned_cols=88 Identities=27% Similarity=0.362 Sum_probs=43.2
Q ss_pred cCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCC--cCCcCCcccCCCCCCCCEEEcccCCCCc-cCccccCCCC
Q 038187 138 LGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASN--QINSSIPLEIENLNFLQVLDLSRNEIGG-SIPSTLGHLK 214 (560)
Q Consensus 138 l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n--~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~ 214 (560)
...+..|+.|++.+..++. -..+-.+++|+.|.++.| ++.+.++....++++|+++++++|++.. .....+..+.
T Consensus 39 ~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence 3344455555555544431 123445556666666666 4444444344455666666666666552 0111233445
Q ss_pred CCCEEeCCCCccc
Q 038187 215 RLRSLDLSLNELV 227 (560)
Q Consensus 215 ~L~~L~L~~n~l~ 227 (560)
+|..|++.+|..+
T Consensus 117 nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 117 NLKSLDLFNCSVT 129 (260)
T ss_pred chhhhhcccCCcc
Confidence 5555555555443
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.90 E-value=7.3e-05 Score=78.80 Aligned_cols=35 Identities=31% Similarity=0.270 Sum_probs=17.4
Q ss_pred CCeeeCccCcc-cccChhhhhc-CcCCCeeeCcCCcC
Q 038187 480 LRALSLSNNLL-SGSIPSEIGK-LKELYYLDLSQNFI 514 (560)
Q Consensus 480 L~~L~Ls~n~l-~~~~p~~l~~-l~~L~~L~L~~n~l 514 (560)
++.|+++.+.. +...-..... +..++.+++.++..
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 56666666643 2222222222 45566666666653
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.84 E-value=0.00067 Score=62.28 Aligned_cols=40 Identities=25% Similarity=0.458 Sum_probs=16.7
Q ss_pred CCCCCCEEECcCC--cccccCCccccCCCCCCEEEccCCcCc
Q 038187 404 HLNRLTSLDLSGN--NLVGPIPSSVGHLTQLTTFDMHSNRIN 443 (560)
Q Consensus 404 ~~~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~l~~n~l~ 443 (560)
.+++|+.|.++.| ++++.++.....+++|+++++++|++.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 3344444444444 333333333333344444444444443
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.79 E-value=0.00017 Score=76.04 Aligned_cols=235 Identities=19% Similarity=0.117 Sum_probs=106.9
Q ss_pred CCCCCEEECcCCCCccc--cCcccCCCCCCCEEEccCC-cCcccCC----ccccCCCCCCEEEccCCc-ccccCCcCcc-
Q 038187 285 LVNLTSLFLCNNSQTGF--IPSTLGHLNRLTSLDLSGN-NLVGPIP----SSMGHLARLTTFDMHSNR-INGSIPLEIG- 355 (560)
Q Consensus 285 l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~l~~n-~~~~~~~----~~~~~l~~L~~L~l~~n~-l~~~~~~~~~- 355 (560)
.+.|+.+.+.++.-... .......++.|+.|+++++ ......+ .....+++|+.++++.+. ++...-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56777777776643222 2233456677777777763 1111111 122344566666666655 3322222222
Q ss_pred CCCCCCEEEeecCc-CcCCCch-hccCCCCCCEEeccCCccccc--CcccccCCCCCCEEECcCCcccccCCccccCCCC
Q 038187 356 NFNFLQVLDLSYNK-LEGPIPS-TIASLVNLTSLFLCNNSQTGF--IPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQ 431 (560)
Q Consensus 356 ~l~~L~~L~l~~n~-~~~~~~~-~l~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~ 431 (560)
.+++|++|.+.+|. +++..-. ....++.|++|+++.|..... +......+++++.|.+....- ++.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~~ 336 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CPS 336 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------Ccc
Confidence 25566666655554 3332222 223455566666665543211 111122344444433322211 233
Q ss_pred CCEEEccCCcCc---ccCCccccCCCCCCeeecccCcccccC-chhhhcCCCCCeeeCccCcccccChhhhhcCcCCCee
Q 038187 432 LTTFDMHSNRIN---GSIPLEIGNLKHVEDVYLFNNKLDGPI-PPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYL 507 (560)
Q Consensus 432 L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 507 (560)
++.+.+.+.... .........++.++.+.+..+...... ...+.+|+.|. ..+ .........++.|
T Consensus 337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l---------~~~~~~~~~l~~L 406 (482)
T KOG1947|consen 337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESL---------ELRLCRSDSLRVL 406 (482)
T ss_pred HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHH---------HHHhccCCccceE
Confidence 333333332221 122233456677777777776633221 13334444441 111 1111222237888
Q ss_pred eCcCCcCc-cccCccCCC-CCCCCEEeCCCCcCc
Q 038187 508 DLSQNFIN-GKIPSQLGE-IPSIDTVNLCTNNLY 539 (560)
Q Consensus 508 ~L~~n~l~-~~~p~~l~~-l~~L~~L~ls~n~l~ 539 (560)
+++.+... ...-..... +..++.++++++...
T Consensus 407 ~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 407 NLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred ecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 88888643 222222222 566777888777554
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.00012 Score=67.43 Aligned_cols=63 Identities=27% Similarity=0.294 Sum_probs=27.3
Q ss_pred CCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccC-hhhhhcCcCCCeeeCcCCcCccc
Q 038187 453 LKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSI-PSEIGKLKELYYLDLSQNFINGK 517 (560)
Q Consensus 453 l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~ 517 (560)
++.|+.|.|+-|+|+.. ..+..|++|++|+|..|.|.... -..+.++++|+.|.|..|.-.|.
T Consensus 40 Mp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGE 103 (388)
T ss_pred cccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccc
Confidence 34444444444444432 12444444555555444444210 11233445555555555554444
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.48 E-value=0.00095 Score=36.60 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=14.6
Q ss_pred CCCEEeCCCCcCccccCccCCCC
Q 038187 527 SIDTVNLCTNNLYGSIPESLRKV 549 (560)
Q Consensus 527 ~L~~L~ls~n~l~~~ip~~~~~l 549 (560)
+|++||+++|+++ .||++|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 3667777777777 777766553
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.00032 Score=64.63 Aligned_cols=100 Identities=23% Similarity=0.269 Sum_probs=65.1
Q ss_pred CCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccC-chhhhcCCCCCee
Q 038187 405 LNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPI-PPQLLNCSRLRAL 483 (560)
Q Consensus 405 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L 483 (560)
+.+.+.|+..+|.++++ ....+++.|+.|.|+-|+++..- .+..|++|++|+|..|.|.+.. -..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34566677777776643 23456777777777777776432 3567788888888888776421 1346677888888
Q ss_pred eCccCcccccChh-----hhhcCcCCCeee
Q 038187 484 SLSNNLLSGSIPS-----EIGKLKELYYLD 508 (560)
Q Consensus 484 ~Ls~n~l~~~~p~-----~l~~l~~L~~L~ 508 (560)
-|..|.-.|.-+. .+..+++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888877765543 334466666664
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.66 E-value=9.2e-05 Score=76.36 Aligned_cols=182 Identities=25% Similarity=0.262 Sum_probs=96.8
Q ss_pred CCCEEEccCCcccccCC----cCccCCCCCCEEEeecCcCcCCCchhc----cCC-CCCCEEeccCCccccc----Cccc
Q 038187 335 RLTTFDMHSNRINGSIP----LEIGNFNFLQVLDLSYNKLEGPIPSTI----ASL-VNLTSLFLCNNSQTGF----IPST 401 (560)
Q Consensus 335 ~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~l----~~~-~~L~~L~l~~n~l~~~----~~~~ 401 (560)
.+..+.+.+|.+..... ..+...+.|+.|++++|.+.+.....+ ... ..++.|++..|.+++. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 36777777777764322 234556778888888887764333222 222 4556677777766643 3344
Q ss_pred ccCCCCCCEEECcCCcccc----cCCcccc----CCCCCCEEEccCCcCccc----CCccccCCCC-CCeeecccCcccc
Q 038187 402 LGHLNRLTSLDLSGNNLVG----PIPSSVG----HLTQLTTFDMHSNRINGS----IPLEIGNLKH-VEDVYLFNNKLDG 468 (560)
Q Consensus 402 ~~~~~~L~~L~L~~n~l~~----~~p~~~~----~l~~L~~L~l~~n~l~~~----~~~~~~~l~~-L~~L~l~~n~l~~ 468 (560)
+.....++.++++.|.+.. .++..+. ...++++|++++|.++.. +...+...+. +.++++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 5556777777777776531 1222222 345566666666665521 1112223333 4456666666553
Q ss_pred c----CchhhhcC-CCCCeeeCccCcccccC----hhhhhcCcCCCeeeCcCCcCcc
Q 038187 469 P----IPPQLLNC-SRLRALSLSNNLLSGSI----PSEIGKLKELYYLDLSQNFING 516 (560)
Q Consensus 469 ~----~~~~l~~~-~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~~ 516 (560)
. ..+.+..+ ..+++++++.|.++... .+.+..++.++.+.+++|.+..
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 2 12223333 44566666666665433 2333445556666666665543
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.05 E-value=0.0084 Score=32.80 Aligned_cols=18 Identities=56% Similarity=0.682 Sum_probs=8.7
Q ss_pred CCeeeCccCcccccChhhh
Q 038187 480 LRALSLSNNLLSGSIPSEI 498 (560)
Q Consensus 480 L~~L~Ls~n~l~~~~p~~l 498 (560)
|++|||++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 445555555555 444443
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.69 E-value=0.00026 Score=73.12 Aligned_cols=202 Identities=22% Similarity=0.250 Sum_probs=124.9
Q ss_pred CCEEEccCCcCcccC----CccccCCCCCCEEEccCCcccccCCc----CccCC-CCCCEEEeecCcCcCC----Cchhc
Q 038187 312 LTSLDLSGNNLVGPI----PSSMGHLARLTTFDMHSNRINGSIPL----EIGNF-NFLQVLDLSYNKLEGP----IPSTI 378 (560)
Q Consensus 312 L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l-~~L~~L~l~~n~~~~~----~~~~l 378 (560)
+..+.+.+|.+.... -..+...+.|+.|++++|.+.+.... .+... ..+++|++..|.+++. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 777888888775432 23445678888888888888743211 12222 5677778877777653 33455
Q ss_pred cCCCCCCEEeccCCccccc----Cccccc----CCCCCCEEECcCCccccc----CCccccCCCC-CCEEEccCCcCccc
Q 038187 379 ASLVNLTSLFLCNNSQTGF----IPSTLG----HLNRLTSLDLSGNNLVGP----IPSSVGHLTQ-LTTFDMHSNRINGS 445 (560)
Q Consensus 379 ~~~~~L~~L~l~~n~l~~~----~~~~~~----~~~~L~~L~L~~n~l~~~----~p~~~~~l~~-L~~L~l~~n~l~~~ 445 (560)
.....++.++++.|.+... ++..+. ...+++.|++.+|.++.. +...+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 5677888888888876421 222333 356788888888876632 1123334444 66788888887743
Q ss_pred ----CCccccCC-CCCCeeecccCcccccC----chhhhcCCCCCeeeCccCcccccChh----hhhcCcCCCeeeCcCC
Q 038187 446 ----IPLEIGNL-KHVEDVYLFNNKLDGPI----PPQLLNCSRLRALSLSNNLLSGSIPS----EIGKLKELYYLDLSQN 512 (560)
Q Consensus 446 ----~~~~~~~l-~~L~~L~l~~n~l~~~~----~~~l~~~~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~L~~n 512 (560)
....+..+ ..++.++++.|.+...- ...+..++.++++.++.|.+.+.... .......+..+-+.++
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~ 328 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGT 328 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcccc
Confidence 22233444 56788888888887643 34456677888888888888764332 2223344555555544
Q ss_pred c
Q 038187 513 F 513 (560)
Q Consensus 513 ~ 513 (560)
.
T Consensus 329 ~ 329 (478)
T KOG4308|consen 329 G 329 (478)
T ss_pred C
Confidence 3
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.70 E-value=0.026 Score=50.05 Aligned_cols=82 Identities=21% Similarity=0.121 Sum_probs=42.7
Q ss_pred CCCEEEccCCcCcccCCccccCCCCCCeeecccCcccc-cCchhhh-cCCCCCeeeCccC-cccccChhhhhcCcCCCee
Q 038187 431 QLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDG-PIPPQLL-NCSRLRALSLSNN-LLSGSIPSEIGKLKELYYL 507 (560)
Q Consensus 431 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~-~~~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L 507 (560)
.++.+|-+++.+..+.-..+.+++.++.|.+.+|.--+ ..-+.++ -.++|+.|+|++| +||...-.++..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 34555555555554444445555555555555554221 1111111 2356666666666 5665555666666666666
Q ss_pred eCcCC
Q 038187 508 DLSQN 512 (560)
Q Consensus 508 ~L~~n 512 (560)
.+.+=
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 65543
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.03 E-value=0.085 Score=26.68 Aligned_cols=13 Identities=31% Similarity=0.531 Sum_probs=5.0
Q ss_pred CCCEEeCCCCcCc
Q 038187 527 SIDTVNLCTNNLY 539 (560)
Q Consensus 527 ~L~~L~ls~n~l~ 539 (560)
+|+.|++++|++.
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3455555555543
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.61 E-value=0.0084 Score=54.11 Aligned_cols=87 Identities=20% Similarity=0.237 Sum_probs=56.7
Q ss_pred ccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCccccCccCCCCCCCC
Q 038187 450 IGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFINGKIPSQLGEIPSID 529 (560)
Q Consensus 450 ~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 529 (560)
+......+.||++.|++.. .-..+..++.+.+||++.|++. ..|+.+++...+..+++..|..+ ..|.++...+.++
T Consensus 38 i~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 3445556666666666542 2233445566677777777776 56777777777777777777666 5677777777777
Q ss_pred EEeCCCCcCc
Q 038187 530 TVNLCTNNLY 539 (560)
Q Consensus 530 ~L~ls~n~l~ 539 (560)
.+++.+|.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 7777777654
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.72 E-value=0.034 Score=49.28 Aligned_cols=81 Identities=20% Similarity=0.148 Sum_probs=60.4
Q ss_pred CCCeeecccCcccccCchhhhcCCCCCeeeCccCc-ccccChhhhhc-CcCCCeeeCcCC-cCccccCccCCCCCCCCEE
Q 038187 455 HVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNL-LSGSIPSEIGK-LKELYYLDLSQN-FINGKIPSQLGEIPSIDTV 531 (560)
Q Consensus 455 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~-l~~~~p~~l~~-l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L 531 (560)
.++.++.+++.|..+.-+.+..++.++.|.+.+|. +.+---+-+++ .++|+.|++++| +|+..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 47889999999988877888889999999998884 33222222332 578999999988 5776666777788888887
Q ss_pred eCCC
Q 038187 532 NLCT 535 (560)
Q Consensus 532 ~ls~ 535 (560)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7654
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.86 E-value=0.12 Score=28.75 Aligned_cols=19 Identities=37% Similarity=0.440 Sum_probs=8.0
Q ss_pred CCCCeeeCccCcccccChh
Q 038187 478 SRLRALSLSNNLLSGSIPS 496 (560)
Q Consensus 478 ~~L~~L~Ls~n~l~~~~p~ 496 (560)
++|++|+|++|++++..+.
T Consensus 2 ~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHH
Confidence 3445555555555444333
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.17 E-value=0.021 Score=51.60 Aligned_cols=84 Identities=15% Similarity=0.125 Sum_probs=48.5
Q ss_pred CCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeee
Q 038187 429 LTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLD 508 (560)
Q Consensus 429 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 508 (560)
+...+.||++.|++. .....+..++.+..|+++.|++. ..|+.++....++.+++..|..+ ..|.+++..+.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 344455555555544 23333444555666666666665 45666666666666666666666 4566666666666666
Q ss_pred CcCCcCc
Q 038187 509 LSQNFIN 515 (560)
Q Consensus 509 L~~n~l~ 515 (560)
+..|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 6666654
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.07 E-value=0.56 Score=26.60 Aligned_cols=20 Identities=30% Similarity=0.690 Sum_probs=13.8
Q ss_pred CCCCCEEeCCCCcCccccCcc
Q 038187 525 IPSIDTVNLCTNNLYGSIPES 545 (560)
Q Consensus 525 l~~L~~L~ls~n~l~~~ip~~ 545 (560)
+++|+.|++++|++. .||..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 356777888888777 55654
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.07 E-value=0.56 Score=26.60 Aligned_cols=20 Identities=30% Similarity=0.690 Sum_probs=13.8
Q ss_pred CCCCCEEeCCCCcCccccCcc
Q 038187 525 IPSIDTVNLCTNNLYGSIPES 545 (560)
Q Consensus 525 l~~L~~L~ls~n~l~~~ip~~ 545 (560)
+++|+.|++++|++. .||..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 356777888888777 55654
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.05 E-value=2.3 Score=24.18 Aligned_cols=17 Identities=41% Similarity=0.710 Sum_probs=11.8
Q ss_pred CCCEEeCCCCcCccccCc
Q 038187 527 SIDTVNLCTNNLYGSIPE 544 (560)
Q Consensus 527 ~L~~L~ls~n~l~~~ip~ 544 (560)
+|+.|++++|+++ ++|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 5677777777776 6665
No 85
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=62.74 E-value=24 Score=36.06 Aligned_cols=107 Identities=25% Similarity=0.227 Sum_probs=49.3
Q ss_pred CCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEcccCCCCccCccccC---CCCCCCEEeCCCCcccccCCccccC---CC
Q 038187 165 LTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLG---HLKRLRSLDLSLNELVGPIPSSLGH---LT 238 (560)
Q Consensus 165 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~l~~---l~ 238 (560)
-+.+++++++.|.+....|..+..-.+ -+.++.|..+...-..+. .-..+.+++++.|.....+|..+.. -.
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~ 241 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTL 241 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhh
Confidence 355677777777766555544422111 144555554432111110 1124667777777666666554322 22
Q ss_pred CCCEEEeecCcCCc---cCcccccCCCCCCEEECcCCC
Q 038187 239 ELTFFNIYSNRING---SIPLEIGNFNFLQVLDLSYNK 273 (560)
Q Consensus 239 ~L~~L~l~~n~~~~---~~~~~l~~l~~L~~L~L~~n~ 273 (560)
.++.++.+...+.- ..+-..+.-++++..+++.|.
T Consensus 242 vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng 279 (553)
T KOG4242|consen 242 VLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNG 279 (553)
T ss_pred hhhcccccccccchhhcccccccccccccchhhhccCC
Confidence 34555555443321 111122333455555555543
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=62.73 E-value=7 Score=22.27 Aligned_cols=15 Identities=13% Similarity=0.503 Sum_probs=10.9
Q ss_pred CCCCCEEeCCCCcCc
Q 038187 525 IPSIDTVNLCTNNLY 539 (560)
Q Consensus 525 l~~L~~L~ls~n~l~ 539 (560)
+.+|+.|++++|++.
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356778888888775
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=62.12 E-value=4.6 Score=23.37 Aligned_cols=14 Identities=57% Similarity=0.695 Sum_probs=7.4
Q ss_pred CCCeeeCccCcccc
Q 038187 479 RLRALSLSNNLLSG 492 (560)
Q Consensus 479 ~L~~L~Ls~n~l~~ 492 (560)
.|++|||++|.+..
T Consensus 3 ~L~~LdL~~N~i~~ 16 (28)
T smart00368 3 SLRELDLSNNKLGD 16 (28)
T ss_pred ccCEEECCCCCCCH
Confidence 45555555555543
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=50.85 E-value=10 Score=21.37 Aligned_cols=11 Identities=45% Similarity=0.567 Sum_probs=5.2
Q ss_pred CCCCeeeCccC
Q 038187 478 SRLRALSLSNN 488 (560)
Q Consensus 478 ~~L~~L~Ls~n 488 (560)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34444444444
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=36.21 E-value=21 Score=37.19 Aligned_cols=63 Identities=24% Similarity=0.259 Sum_probs=35.8
Q ss_pred CCCCCCEEeccCCccccc--CcccccCCCCCCEEECcCC--cccccCCccccC--CCCCCEEEccCCcCcc
Q 038187 380 SLVNLTSLFLCNNSQTGF--IPSTLGHLNRLTSLDLSGN--NLVGPIPSSVGH--LTQLTTFDMHSNRING 444 (560)
Q Consensus 380 ~~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~L~~n--~l~~~~p~~~~~--l~~L~~L~l~~n~l~~ 444 (560)
..+.+..+.+++|++-.. +...-...|+|+.|+|++| .+.. ..++.+ ...|++|-+.||.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 456777777888776532 1122234577788888877 3321 112222 3456677777777654
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=35.36 E-value=24 Score=36.82 Aligned_cols=12 Identities=33% Similarity=0.110 Sum_probs=6.3
Q ss_pred CCeeeCcCCcCc
Q 038187 504 LYYLDLSQNFIN 515 (560)
Q Consensus 504 L~~L~L~~n~l~ 515 (560)
|++|-+.+|++.
T Consensus 272 Leel~l~GNPlc 283 (585)
T KOG3763|consen 272 LEELVLEGNPLC 283 (585)
T ss_pred HHHeeecCCccc
Confidence 455555555554
No 91
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=29.57 E-value=60 Score=23.07 Aligned_cols=13 Identities=23% Similarity=0.534 Sum_probs=5.6
Q ss_pred HHHHHHhhccCCC
Q 038187 12 VIIILINVGAKSD 24 (560)
Q Consensus 12 ~~~~l~~~~~~~~ 24 (560)
++.+++++++++.
T Consensus 6 iIaL~~avaa~a~ 18 (66)
T PF10907_consen 6 IIALVVAVAAAAG 18 (66)
T ss_pred hHHHHHHHHhhhc
Confidence 4444444444333
Done!