Query 038187
Match_columns 560
No_of_seqs 500 out of 4714
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 14:20:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038187.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038187hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.4E-69 8.1E-74 597.9 39.3 513 42-560 10-717 (768)
2 3rgz_A Protein brassinosteroid 100.0 5.5E-61 1.9E-65 531.0 35.2 443 114-558 219-738 (768)
3 3t6q_A CD180 antigen; protein- 100.0 8.9E-55 3E-59 470.5 40.2 464 81-559 33-559 (606)
4 4eco_A Uncharacterized protein 100.0 1.2E-57 4.2E-62 493.1 17.2 471 42-539 28-600 (636)
5 3t6q_A CD180 antigen; protein- 100.0 5.5E-54 1.9E-58 464.3 41.4 441 119-560 34-536 (606)
6 4ecn_A Leucine-rich repeat pro 100.0 2.1E-54 7E-59 475.5 28.1 478 41-546 266-847 (876)
7 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-51 3.7E-56 452.3 44.3 446 81-539 25-573 (680)
8 3vq2_A TLR4, TOLL-like recepto 100.0 4.8E-52 1.7E-56 449.1 36.4 456 81-560 32-558 (606)
9 1ziw_A TOLL-like receptor 3; i 100.0 9.2E-51 3.1E-55 444.9 42.4 447 114-560 93-622 (680)
10 3j0a_A TOLL-like receptor 5; m 100.0 2.5E-51 8.7E-56 458.3 37.7 470 70-560 14-560 (844)
11 3vq2_A TLR4, TOLL-like recepto 100.0 1.9E-50 6.5E-55 436.6 35.2 440 80-543 55-562 (606)
12 2z63_A TOLL-like receptor 4, v 100.0 2.7E-50 9.1E-55 432.3 33.5 425 114-547 48-515 (570)
13 2z63_A TOLL-like receptor 4, v 100.0 1.9E-49 6.5E-54 425.7 35.9 422 114-544 72-536 (570)
14 3j0a_A TOLL-like receptor 5; m 100.0 3.7E-49 1.3E-53 440.8 35.9 438 117-560 23-539 (844)
15 4eco_A Uncharacterized protein 100.0 2.5E-51 8.7E-56 443.7 17.7 431 118-560 81-600 (636)
16 2z81_A CD282 antigen, TOLL-lik 100.0 5.9E-49 2E-53 419.8 29.1 431 118-560 26-510 (549)
17 4ecn_A Leucine-rich repeat pro 100.0 1.1E-47 3.9E-52 422.0 27.2 432 118-560 323-840 (876)
18 2z7x_B TOLL-like receptor 1, v 100.0 2.1E-47 7.1E-52 405.0 23.9 428 118-560 21-481 (520)
19 2z7x_B TOLL-like receptor 1, v 100.0 7.9E-47 2.7E-51 400.6 22.7 436 80-543 20-485 (520)
20 2z81_A CD282 antigen, TOLL-lik 100.0 1.8E-45 6.3E-50 392.8 29.8 409 142-560 26-486 (549)
21 4g8a_A TOLL-like receptor 4; l 100.0 9.8E-43 3.4E-47 378.3 36.7 439 118-560 52-580 (635)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-43 4.4E-48 379.2 26.2 425 118-559 52-509 (562)
23 3v47_A TOLL-like receptor 5B a 100.0 2.1E-42 7.1E-47 360.4 30.3 389 121-543 13-412 (455)
24 3v47_A TOLL-like receptor 5B a 100.0 3.2E-42 1.1E-46 359.1 28.7 364 118-495 30-412 (455)
25 1jl5_A Outer protein YOPM; leu 100.0 6.1E-42 2.1E-46 354.5 26.2 383 117-550 10-422 (454)
26 4g8a_A TOLL-like receptor 4; l 100.0 6E-41 2E-45 364.3 35.2 439 81-540 52-581 (635)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.3E-42 8E-47 369.4 22.9 443 72-543 43-514 (562)
28 1jl5_A Outer protein YOPM; leu 100.0 8.8E-40 3E-44 338.4 28.4 400 81-550 11-440 (454)
29 3bz5_A Internalin-J, INLJ; leu 100.0 2.1E-39 7.3E-44 335.8 28.6 356 114-545 38-393 (457)
30 1o6v_A Internalin A; bacterial 100.0 1E-38 3.5E-43 333.1 32.0 379 139-549 43-432 (466)
31 1o6v_A Internalin A; bacterial 100.0 2.2E-38 7.7E-43 330.5 33.5 347 115-492 43-389 (466)
32 3bz5_A Internalin-J, INLJ; leu 100.0 3.2E-38 1.1E-42 326.9 30.4 398 80-550 41-454 (457)
33 1ogq_A PGIP-2, polygalacturona 100.0 6.7E-40 2.3E-44 323.3 16.1 290 40-345 2-302 (313)
34 2id5_A Lingo-1, leucine rich r 100.0 1.4E-36 4.7E-41 318.3 32.0 321 120-443 13-333 (477)
35 2id5_A Lingo-1, leucine rich r 100.0 1.3E-36 4.6E-41 318.4 30.8 352 144-499 13-364 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 3.4E-35 1.2E-39 299.5 29.5 311 116-468 43-353 (390)
37 3oja_B Anopheles plasmodium-re 100.0 5.9E-35 2E-39 313.8 30.5 311 116-444 49-359 (597)
38 3o6n_A APL1; leucine-rich repe 100.0 2.1E-34 7.1E-39 293.6 27.9 309 189-515 44-352 (390)
39 4fmz_A Internalin; leucine ric 100.0 8.9E-34 3E-38 284.3 30.9 306 187-539 41-346 (347)
40 4fmz_A Internalin; leucine ric 100.0 7.6E-34 2.6E-38 284.8 30.3 307 114-467 40-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 4.7E-34 1.6E-38 306.8 27.9 310 189-516 50-359 (597)
42 1z7x_W Ribonuclease inhibitor; 100.0 4.2E-37 1.5E-41 320.9 -3.1 379 166-544 3-445 (461)
43 1ogq_A PGIP-2, polygalacturona 100.0 2E-34 7E-39 284.1 16.2 251 287-540 51-306 (313)
44 1z7x_W Ribonuclease inhibitor; 100.0 9.2E-37 3.1E-41 318.3 -5.4 379 142-520 3-445 (461)
45 1xku_A Decorin; proteoglycan, 100.0 4E-31 1.4E-35 263.0 29.6 247 167-445 32-278 (330)
46 1xku_A Decorin; proteoglycan, 100.0 5.7E-31 1.9E-35 261.9 30.4 246 119-374 32-279 (330)
47 2ft3_A Biglycan; proteoglycan, 100.0 3.4E-31 1.2E-35 263.7 28.0 224 215-446 55-280 (332)
48 2ft3_A Biglycan; proteoglycan, 100.0 3.6E-31 1.2E-35 263.5 27.8 289 143-464 34-330 (332)
49 4fcg_A Uncharacterized protein 100.0 3.1E-33 1.1E-37 277.3 9.7 282 41-370 24-313 (328)
50 3ogk_B Coronatine-insensitive 100.0 7.5E-35 2.6E-39 313.7 -4.6 437 114-552 69-588 (592)
51 3ogk_B Coronatine-insensitive 100.0 5.6E-34 1.9E-38 306.9 -1.7 417 135-553 66-541 (592)
52 2z80_A TOLL-like receptor 2, v 100.0 7.7E-30 2.6E-34 256.2 16.8 255 118-373 52-316 (353)
53 2z66_A Variable lymphocyte rec 100.0 1.4E-29 4.7E-34 249.1 16.3 246 242-491 11-261 (306)
54 2z80_A TOLL-like receptor 2, v 100.0 2.7E-29 9.1E-34 252.2 17.8 282 237-543 30-318 (353)
55 4fcg_A Uncharacterized protein 100.0 6.4E-29 2.2E-33 246.2 19.2 225 310-539 81-314 (328)
56 2z66_A Variable lymphocyte rec 100.0 1.6E-28 5.6E-33 241.4 21.2 261 215-500 29-296 (306)
57 3zyi_A Leucine-rich repeat-con 100.0 1.3E-27 4.5E-32 248.1 27.0 228 118-347 75-303 (452)
58 1ozn_A Reticulon 4 receptor; N 100.0 5.2E-28 1.8E-32 235.3 21.6 238 286-524 32-270 (285)
59 3zyj_A Leucine-rich repeat-con 100.0 4.1E-27 1.4E-31 243.5 26.3 228 118-347 64-292 (440)
60 1ozn_A Reticulon 4 receptor; N 100.0 1.5E-27 5.2E-32 232.0 21.6 250 262-512 32-284 (285)
61 2p1m_B Transport inhibitor res 100.0 1.1E-31 3.9E-36 289.0 -10.8 420 114-537 62-542 (594)
62 3zyi_A Leucine-rich repeat-con 100.0 7.3E-27 2.5E-31 242.4 25.8 247 264-515 56-303 (452)
63 3zyj_A Leucine-rich repeat-con 100.0 7.6E-27 2.6E-31 241.5 24.9 247 264-515 45-292 (440)
64 2p1m_B Transport inhibitor res 100.0 2.9E-31 1E-35 285.7 -9.3 414 136-553 60-534 (594)
65 1wwl_A Monocyte differentiatio 99.9 5.5E-29 1.9E-33 245.2 4.0 202 189-396 94-310 (312)
66 1wwl_A Monocyte differentiatio 99.9 3.2E-29 1.1E-33 246.9 2.0 203 332-540 93-310 (312)
67 2o6q_A Variable lymphocyte rec 99.9 5.8E-26 2E-30 218.8 23.8 217 67-323 2-218 (270)
68 3o53_A Protein LRIM1, AGAP0063 99.9 3.1E-28 1E-32 240.5 7.6 246 261-520 33-281 (317)
69 3g06_A SSPH2 (leucine-rich rep 99.9 6.7E-26 2.3E-30 241.5 26.1 268 214-525 40-307 (622)
70 3o53_A Protein LRIM1, AGAP0063 99.9 5.7E-28 1.9E-32 238.6 7.4 264 219-496 15-281 (317)
71 3g06_A SSPH2 (leucine-rich rep 99.9 8.1E-25 2.8E-29 233.1 29.1 134 143-299 41-174 (622)
72 3oja_A Leucine-rich immune mol 99.9 6.5E-27 2.2E-31 244.3 12.1 234 286-533 34-269 (487)
73 3oja_A Leucine-rich immune mol 99.9 8E-27 2.8E-31 243.6 8.5 237 260-510 32-270 (487)
74 2z62_A TOLL-like receptor 4, v 99.9 1.2E-24 4.1E-29 210.4 21.0 208 311-543 29-241 (276)
75 2z62_A TOLL-like receptor 4, v 99.9 2.2E-24 7.7E-29 208.5 19.1 205 118-323 28-237 (276)
76 3rfs_A Internalin B, repeat mo 99.9 9.1E-25 3.1E-29 210.6 15.4 207 333-550 40-246 (272)
77 3rfs_A Internalin B, repeat mo 99.9 3.5E-24 1.2E-28 206.5 17.5 209 139-358 38-246 (272)
78 2o6q_A Variable lymphocyte rec 99.9 2E-23 6.8E-28 201.0 22.4 202 311-515 17-218 (270)
79 1p9a_G Platelet glycoprotein I 99.9 5.1E-23 1.7E-27 200.0 20.5 203 306-515 6-208 (290)
80 2ca6_A RAN GTPase-activating p 99.9 3.4E-25 1.2E-29 225.1 5.4 189 355-543 91-320 (386)
81 3goz_A Leucine-rich repeat-con 99.9 6.6E-25 2.3E-29 220.8 6.3 257 242-498 2-304 (362)
82 2ast_B S-phase kinase-associat 99.9 3.9E-25 1.3E-29 220.3 4.6 254 263-523 48-314 (336)
83 3goz_A Leucine-rich repeat-con 99.9 8.1E-25 2.8E-29 220.1 6.6 255 266-520 2-302 (362)
84 4glp_A Monocyte differentiatio 99.9 1.1E-23 3.6E-28 207.3 14.4 199 358-560 91-307 (310)
85 2ast_B S-phase kinase-associat 99.9 1.4E-24 4.8E-29 216.3 8.2 254 287-548 48-315 (336)
86 1p9a_G Platelet glycoprotein I 99.9 3.5E-22 1.2E-26 194.0 23.1 132 114-251 6-137 (290)
87 2ca6_A RAN GTPase-activating p 99.9 4.3E-25 1.5E-29 224.3 2.3 245 254-518 24-319 (386)
88 3m19_A Variable lymphocyte rec 99.9 1.3E-22 4.5E-27 193.0 19.3 191 68-276 3-193 (251)
89 2xwt_C Thyrotropin receptor; s 99.9 1.9E-22 6.6E-27 190.4 15.4 196 359-557 32-236 (239)
90 4glp_A Monocyte differentiatio 99.9 8.6E-23 2.9E-27 200.8 13.2 201 334-540 91-308 (310)
91 3m19_A Variable lymphocyte rec 99.9 1.3E-21 4.5E-26 186.1 18.6 181 334-517 14-194 (251)
92 2xwt_C Thyrotropin receptor; s 99.9 9.6E-22 3.3E-26 185.6 17.0 196 335-536 32-236 (239)
93 2o6s_A Variable lymphocyte rec 99.9 1.4E-21 5E-26 180.2 15.8 164 117-287 27-190 (208)
94 1h6u_A Internalin H; cell adhe 99.9 1.6E-21 5.3E-26 191.4 16.8 195 306-516 37-231 (308)
95 1h6u_A Internalin H; cell adhe 99.9 3.5E-21 1.2E-25 188.8 18.2 193 115-347 38-230 (308)
96 2o6s_A Variable lymphocyte rec 99.8 1.1E-20 3.7E-25 174.3 15.6 176 358-544 28-203 (208)
97 3cvr_A Invasion plasmid antige 99.8 9.8E-21 3.4E-25 199.2 14.7 187 311-525 60-253 (571)
98 4ay9_X Follicle-stimulating ho 99.8 8.1E-20 2.8E-24 182.6 17.3 240 265-513 12-257 (350)
99 3e6j_A Variable lymphocyte rec 99.8 2.5E-19 8.7E-24 167.6 17.9 164 62-253 11-174 (229)
100 4ay9_X Follicle-stimulating ho 99.8 2E-19 6.8E-24 179.8 17.4 180 118-299 30-215 (350)
101 3cvr_A Invasion plasmid antige 99.8 3.3E-19 1.1E-23 187.7 19.0 189 287-503 60-255 (571)
102 2v70_A SLIT-2, SLIT homolog 2 99.8 1.4E-18 4.6E-23 161.5 15.7 152 361-515 14-166 (220)
103 1m9s_A Internalin B; cell inva 99.8 1.1E-18 3.8E-23 185.7 16.0 190 288-493 23-212 (605)
104 1h6t_A Internalin B; cell adhe 99.8 1.7E-18 5.8E-23 168.2 15.8 171 140-324 44-214 (291)
105 2v9t_B SLIT homolog 2 protein 99.8 3.1E-18 1.1E-22 159.0 16.5 134 118-251 32-165 (220)
106 1h6t_A Internalin B; cell adhe 99.8 1E-18 3.5E-23 169.7 13.7 186 315-516 29-214 (291)
107 2v9t_B SLIT homolog 2 protein 99.8 2.9E-18 9.8E-23 159.3 15.2 152 361-515 14-165 (220)
108 1m9s_A Internalin B; cell inva 99.8 3.6E-18 1.2E-22 181.7 17.2 173 114-300 39-211 (605)
109 2v70_A SLIT-2, SLIT homolog 2 99.8 5.7E-18 2E-22 157.2 16.0 134 119-252 33-167 (220)
110 3e6j_A Variable lymphocyte rec 99.8 9.2E-18 3.2E-22 156.9 16.6 136 406-542 40-175 (229)
111 2xot_A Amphoterin-induced prot 99.8 6.4E-18 2.2E-22 169.5 15.5 177 313-492 21-203 (361)
112 4ezg_A Putative uncharacterize 99.8 6E-18 2.1E-22 154.4 13.4 152 381-540 43-195 (197)
113 2xot_A Amphoterin-induced prot 99.7 9.1E-18 3.1E-22 168.4 14.9 175 121-298 21-201 (361)
114 4ezg_A Putative uncharacterize 99.7 1.6E-17 5.5E-22 151.5 13.4 153 356-516 42-195 (197)
115 4b8c_D Glucose-repressible alc 99.7 3.9E-18 1.3E-22 186.0 6.4 219 310-540 173-405 (727)
116 4b8c_D Glucose-repressible alc 99.7 6E-18 2E-22 184.6 6.8 142 375-520 217-359 (727)
117 1xeu_A Internalin C; cellular 99.7 9.6E-18 3.3E-22 160.2 7.2 171 332-517 17-187 (263)
118 1xeu_A Internalin C; cellular 99.7 2.7E-17 9.3E-22 157.1 9.6 169 116-299 17-185 (263)
119 1dce_A Protein (RAB geranylger 99.7 1.9E-19 6.4E-24 190.5 -6.5 107 432-543 443-550 (567)
120 1w8a_A SLIT protein; signaling 99.7 1.4E-16 4.9E-21 144.4 13.1 171 385-559 11-182 (192)
121 1dce_A Protein (RAB geranylger 99.7 4.3E-19 1.5E-23 187.7 -4.2 197 331-533 346-567 (567)
122 2ell_A Acidic leucine-rich nuc 99.7 1.4E-16 4.7E-21 141.4 11.8 138 405-545 23-165 (168)
123 2je0_A Acidic leucine-rich nuc 99.7 2.4E-16 8E-21 136.8 10.1 128 406-535 17-149 (149)
124 3sb4_A Hypothetical leucine ri 99.7 9E-17 3.1E-21 159.1 8.2 103 405-509 225-328 (329)
125 1w8a_A SLIT protein; signaling 99.7 1.3E-15 4.4E-20 138.2 14.5 128 121-251 11-139 (192)
126 2ell_A Acidic leucine-rich nuc 99.7 6.3E-16 2.2E-20 137.0 11.9 136 382-520 24-164 (168)
127 2je0_A Acidic leucine-rich nuc 99.6 3.4E-16 1.2E-20 135.8 8.6 129 116-246 15-148 (149)
128 3sb4_A Hypothetical leucine ri 99.6 8.4E-16 2.9E-20 152.1 10.8 260 117-389 48-328 (329)
129 2o6r_A Variable lymphocyte rec 99.6 3.7E-15 1.3E-19 133.3 13.4 132 409-543 10-141 (177)
130 2o6r_A Variable lymphocyte rec 99.6 5.6E-15 1.9E-19 132.1 14.4 112 118-229 28-139 (177)
131 4fs7_A Uncharacterized protein 99.6 4.2E-14 1.4E-18 143.5 21.9 64 134-199 63-126 (394)
132 2wfh_A SLIT homolog 2 protein 99.6 4.6E-15 1.6E-19 134.5 13.2 127 385-515 13-139 (193)
133 4fs7_A Uncharacterized protein 99.6 1.3E-13 4.6E-18 139.8 25.2 307 114-437 67-373 (394)
134 4fdw_A Leucine rich hypothetic 99.6 1.5E-13 5.2E-18 138.9 25.3 241 167-418 136-382 (401)
135 4fdw_A Leucine rich hypothetic 99.6 1.6E-13 5.5E-18 138.7 24.7 246 184-441 130-381 (401)
136 2wfh_A SLIT homolog 2 protein 99.6 3.2E-14 1.1E-18 128.9 14.8 126 121-250 13-138 (193)
137 1ds9_A Outer arm dynein; leuci 99.6 7.9E-17 2.7E-21 147.0 -4.1 153 380-539 16-185 (198)
138 1a9n_A U2A', U2A'; complex (nu 99.5 9.6E-15 3.3E-19 130.4 9.4 132 403-539 16-153 (176)
139 1ds9_A Outer arm dynein; leuci 99.5 1.1E-16 3.8E-21 146.0 -6.1 153 402-559 14-184 (198)
140 1a9n_A U2A', U2A'; complex (nu 99.5 4.9E-14 1.7E-18 125.7 10.3 105 407-515 43-153 (176)
141 3g39_A Variable lymphocyte rec 99.4 5.6E-13 1.9E-17 118.0 11.5 104 409-515 12-115 (170)
142 3g39_A Variable lymphocyte rec 99.4 2.7E-12 9.1E-17 113.6 13.5 104 121-227 12-115 (170)
143 2r9u_A Variable lymphocyte rec 99.4 1.3E-12 4.5E-17 116.0 11.2 104 409-515 15-118 (174)
144 4gt6_A Cell surface protein; l 99.4 9.5E-11 3.2E-15 118.7 25.1 131 353-490 260-390 (394)
145 4gt6_A Cell surface protein; l 99.4 1.1E-10 3.8E-15 118.2 24.7 332 181-538 54-390 (394)
146 2r9u_A Variable lymphocyte rec 99.4 6.3E-12 2.2E-16 111.6 13.1 104 121-227 15-118 (174)
147 3un9_A NLR family member X1; l 99.3 4.2E-14 1.4E-18 141.6 -2.2 134 406-539 126-283 (372)
148 3un9_A NLR family member X1; l 99.3 6.7E-14 2.3E-18 140.1 -0.9 167 381-547 71-260 (372)
149 2ifg_A High affinity nerve gro 99.2 8.3E-11 2.8E-15 117.0 10.7 104 410-516 12-117 (347)
150 2ifg_A High affinity nerve gro 99.1 1.8E-10 6E-15 114.6 11.2 102 123-227 13-116 (347)
151 4h09_A Hypothetical leucine ri 99.1 3.4E-08 1.2E-12 99.2 27.7 315 114-454 42-356 (379)
152 4h09_A Hypothetical leucine ri 99.1 2.4E-08 8.2E-13 100.4 25.6 59 161-222 41-99 (379)
153 2ra8_A Uncharacterized protein 99.0 1.8E-10 6E-15 114.3 6.6 83 453-537 251-341 (362)
154 2ra8_A Uncharacterized protein 99.0 1.6E-10 5.6E-15 114.5 4.8 154 401-557 167-340 (362)
155 1io0_A Tropomodulin; LRR prote 98.7 9.2E-09 3.1E-13 92.0 3.5 87 453-539 64-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 2.2E-08 7.6E-13 89.5 3.7 63 453-515 92-164 (185)
157 3rw6_A Nuclear RNA export fact 98.4 1.4E-07 4.8E-12 88.6 3.8 66 476-543 168-237 (267)
158 3rw6_A Nuclear RNA export fact 98.4 4.1E-08 1.4E-12 92.2 -0.0 79 452-532 168-257 (267)
159 3e4g_A ATP synthase subunit S, 98.3 3.6E-07 1.2E-11 79.5 4.6 84 430-513 61-150 (176)
160 3e4g_A ATP synthase subunit S, 98.3 2.9E-07 1E-11 80.1 2.8 86 454-539 61-153 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.5 4.8E-05 1.6E-09 67.5 3.8 66 403-468 38-112 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.4 7.9E-05 2.7E-09 66.0 4.0 114 377-490 36-169 (197)
163 3rfe_A Platelet glycoprotein I 96.3 0.0043 1.5E-07 51.1 5.3 57 457-515 11-68 (130)
164 3rfe_A Platelet glycoprotein I 95.8 0.02 6.8E-07 47.1 6.9 11 168-178 33-43 (130)
165 2lz0_A Uncharacterized protein 51.1 47 0.0016 25.1 6.7 14 185-198 15-28 (100)
166 2lz0_A Uncharacterized protein 43.5 30 0.001 26.2 4.5 38 136-174 14-51 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.4e-69 Score=597.86 Aligned_cols=513 Identities=30% Similarity=0.485 Sum_probs=370.8
Q ss_pred cHHHHHHHHcCCCCCC--CCCCCCCCCCCCccccceecCCCCCeEEEeccccCCCCceee---cCCCCcccccc------
Q 038187 42 IQLERKALLGTGWWVN--NGATSGNYTSNHCKWTGISCNSAGSVTGVSLLLYENDNIKGE---LGRFNFSCFPN------ 110 (560)
Q Consensus 42 ~~~~~~~ll~~~~~~~--~~~~~~~~~~~~C~w~gv~C~~~~~v~~l~l~~~~~~~~~~~---~~~~~~~~~~~------ 110 (560)
.+.||+||+++|.... ....+|..+.|||.|.||+|+ .++|+.++++ +..+.|. +++ .+..+..
T Consensus 10 ~~~~~~all~~k~~~~~~~~l~~W~~~~~~C~w~gv~C~-~~~v~~L~L~---~~~l~g~~~~l~~-~l~~L~~L~~l~~ 84 (768)
T 3rgz_A 10 LYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCR-DDKVTSIDLS---SKPLNVGFSAVSS-SLLSLTGLESLFL 84 (768)
T ss_dssp HHHHHHHHHHHHTTCSCTTSSTTCCTTSCGGGSTTEEEE-TTEEEEEECT---TSCCCEEHHHHHH-HTTTCTTCCEEEC
T ss_pred CHHHHHHHHHHHhhCCCcccccCCCCCCCCcCCcceEEC-CCcEEEEECC---CCCcCCccCccCh-hHhccCcccccCC
Confidence 4679999998876443 223455567899999999998 7899999998 6667776 432 1111110
Q ss_pred --------ccccCCCCCccEEECcCCCCCCcCcc--ccCCCCCCCEEECCCCCCCCCCCcCC------------------
Q 038187 111 --------LKKMGRLRNLVHLDLSDNYIEGYILP--TLGHLSKLENLNLSSNALDGNIPSTL------------------ 162 (560)
Q Consensus 111 --------~~~l~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~~~~~~~~~~------------------ 162 (560)
...+.++++|++|++++|.+.+.+|. .++++++|++|++++|.+.+.+|..+
T Consensus 85 ~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 164 (768)
T 3rgz_A 85 SNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164 (768)
T ss_dssp TTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCE
T ss_pred cCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccC
Confidence 02345555555555555555554444 44444444444444444333333221
Q ss_pred --------------------------------CCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEcccCCCCccCcccc
Q 038187 163 --------------------------------GHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTL 210 (560)
Q Consensus 163 --------------------------------~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l 210 (560)
..+++|++|++++|.+.+.+|. ++++++|++|++++|.+++.+|..+
T Consensus 165 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l 243 (768)
T 3rgz_A 165 GANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI 243 (768)
T ss_dssp EETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT
T ss_pred CcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH
Confidence 2233344444444444433333 5555555555555555555444444
Q ss_pred CCCCCCCEEeCCC----------------------CcccccCCccccCC-CCCCEEEeecCcCCccCcccccCCCCCCEE
Q 038187 211 GHLKRLRSLDLSL----------------------NELVGPIPSSLGHL-TELTFFNIYSNRINGSIPLEIGNFNFLQVL 267 (560)
Q Consensus 211 ~~l~~L~~L~L~~----------------------n~l~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 267 (560)
..+++|++|++++ |.+++.+|..+... ++|++|++++|.+++.+|..++.+++|++|
T Consensus 244 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 323 (768)
T 3rgz_A 244 STCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323 (768)
T ss_dssp TTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEE
T ss_pred hcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEE
Confidence 4444444444443 33444555555553 777777777777777777777777777777
Q ss_pred ECcCCCCcCCcccc-ccCCCCCCEEECcCCCCccccCcc-------------------------cCC--CCCCCEEEccC
Q 038187 268 DLSYNKLEGPIPST-IANLVNLTSLFLCNNSQTGFIPST-------------------------LGH--LNRLTSLDLSG 319 (560)
Q Consensus 268 ~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~-------------------------l~~--l~~L~~L~l~~ 319 (560)
++++|.+.+.+|.. +..+++|++|++++|.+++.+|.. +.. +++|++|++++
T Consensus 324 ~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~ 403 (768)
T 3rgz_A 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403 (768)
T ss_dssp ECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS
T ss_pred ECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC
Confidence 77777776666654 666666666666666655444443 333 55677777777
Q ss_pred CcCcccCCccccCCCCCCEEEccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCc
Q 038187 320 NNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIP 399 (560)
Q Consensus 320 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 399 (560)
|.+.+.+|..++.+++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|
T Consensus 404 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 483 (768)
T 3rgz_A 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483 (768)
T ss_dssp SEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred CccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCC
Confidence 77777778888888888888888888888888888888899999999999888888888889999999999999998888
Q ss_pred ccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhc---
Q 038187 400 STLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLN--- 476 (560)
Q Consensus 400 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~--- 476 (560)
..+..+++|++|++++|++++.+|.+++.+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|..+..
T Consensus 484 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~ 563 (768)
T 3rgz_A 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTT
T ss_pred HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccc
Confidence 88999999999999999999899999999999999999999999999999999999999999999988877765432
Q ss_pred -------------------------------------------------------------------CCCCCeeeCccCc
Q 038187 477 -------------------------------------------------------------------CSRLRALSLSNNL 489 (560)
Q Consensus 477 -------------------------------------------------------------------~~~L~~L~Ls~n~ 489 (560)
+++|+.||+++|+
T Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~ 643 (768)
T 3rgz_A 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643 (768)
T ss_dssp CBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSC
T ss_pred hhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCc
Confidence 4678899999999
Q ss_pred ccccChhhhhcCcCCCeeeCcCCcCccccCccCCCCCCCCEEeCCCCcCccccCccCCCCCCe---eeecccCC
Q 038187 490 LSGSIPSEIGKLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLYGSIPESLRKVPSL---CVDGNNFE 560 (560)
Q Consensus 490 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ip~~~~~l~~l---~l~~n~~~ 560 (560)
++|.+|.+++++++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.||..++++++| ++++|+++
T Consensus 644 l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp CBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred ccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 999999999999999999999999999999999999999999999999999999987766555 49999863
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.5e-61 Score=530.99 Aligned_cols=443 Identities=36% Similarity=0.545 Sum_probs=358.8
Q ss_pred cCCCCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCC-CCC
Q 038187 114 MGRLRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENL-NFL 192 (560)
Q Consensus 114 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l-~~L 192 (560)
+.++++|++|++++|.+++.++..++++++|++|++++|.+.+.+|.. .+++|++|++++|.+.+.+|..+... ++|
T Consensus 219 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L 296 (768)
T 3rgz_A 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTL 296 (768)
T ss_dssp CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTC
T ss_pred cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcC
Confidence 445555555555555555555555555555555555555555544443 55556666666666555556555543 666
Q ss_pred CEEEcccCCCCccCccccCCCCCCCEEeCCCCcccccCCcc-ccCCCCCCEEEeecCcCCccCcccccCCC-CCCEEECc
Q 038187 193 QVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSS-LGHLTELTFFNIYSNRINGSIPLEIGNFN-FLQVLDLS 270 (560)
Q Consensus 193 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~L~ 270 (560)
++|++++|.+++.+|..++++++|++|++++|.+++.+|.. +.++++|++|++++|.+++.+|..+..++ +|++|+++
T Consensus 297 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls 376 (768)
T 3rgz_A 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376 (768)
T ss_dssp SEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECC
T ss_pred CEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEcc
Confidence 66666666666666666666666666666666666666654 66666777777777766666666666665 67777777
Q ss_pred CCCCcCCccccccC--CCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccc
Q 038187 271 YNKLEGPIPSTIAN--LVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRING 348 (560)
Q Consensus 271 ~n~l~~~~~~~l~~--l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 348 (560)
+|.+.+.+|..+.. +++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+
T Consensus 377 ~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 456 (768)
T 3rgz_A 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456 (768)
T ss_dssp SSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccC
Confidence 77776666666655 6789999999999998999999999999999999999999999999999999999999999999
Q ss_pred cCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccC
Q 038187 349 SIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGH 428 (560)
Q Consensus 349 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~ 428 (560)
.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++++.+|.+++.+++|++|++++|++++.+|..+..
T Consensus 457 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 536 (768)
T 3rgz_A 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG
T ss_pred cCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEccCCcCcccCCccc----------------------------------------------------------
Q 038187 429 LTQLTTFDMHSNRINGSIPLEI---------------------------------------------------------- 450 (560)
Q Consensus 429 l~~L~~L~l~~n~l~~~~~~~~---------------------------------------------------------- 450 (560)
+++|++|++++|+++|.+|..+
T Consensus 537 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 616 (768)
T 3rgz_A 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616 (768)
T ss_dssp CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTT
T ss_pred CCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccc
Confidence 9999999999999887777543
Q ss_pred ------------cCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCcccc
Q 038187 451 ------------GNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFINGKI 518 (560)
Q Consensus 451 ------------~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 518 (560)
..+++|+.|++++|+++|.+|..++.+++|+.|+|++|+++|.+|..++++++|+.|+|++|+++|.+
T Consensus 617 ~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~i 696 (768)
T 3rgz_A 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696 (768)
T ss_dssp SCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECC
T ss_pred cceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcC
Confidence 33577999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCEEeCCCCcCccccCcc--CCCCCCeeeeccc
Q 038187 519 PSQLGEIPSIDTVNLCTNNLYGSIPES--LRKVPSLCVDGNN 558 (560)
Q Consensus 519 p~~l~~l~~L~~L~ls~n~l~~~ip~~--~~~l~~l~l~~n~ 558 (560)
|..+..+++|++||+++|+++|.||.. |..+....+.+|.
T Consensus 697 p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~ 738 (768)
T 3rgz_A 697 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP 738 (768)
T ss_dssp CGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCT
T ss_pred ChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCc
Confidence 999999999999999999999999985 3344444455653
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.9e-55 Score=470.47 Aligned_cols=464 Identities=22% Similarity=0.193 Sum_probs=399.8
Q ss_pred CCeEEEeccccCCCCceeecCCCCccccccccccCCCCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCc
Q 038187 81 GSVTGVSLLLYENDNIKGELGRFNFSCFPNLKKMGRLRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPS 160 (560)
Q Consensus 81 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~ 160 (560)
..++.++++ ++.+.+..+. . +.++++|++|++++|.+.+..+..|+++++|++|++++|.+.+..|.
T Consensus 33 ~~l~~L~Ls---~n~i~~~~~~-~---------~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 99 (606)
T 3t6q_A 33 NSTECLEFS---FNVLPTIQNT-T---------FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET 99 (606)
T ss_dssp TTCCEEECT---TCCCSEECTT-T---------STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT
T ss_pred CcCcEEEcc---CCccCcCChh-H---------hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh
Confidence 467888887 6777655443 3 88899999999999999988889999999999999999999988888
Q ss_pred CCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEcccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCC
Q 038187 161 TLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTEL 240 (560)
Q Consensus 161 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 240 (560)
.|+++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|
T Consensus 100 ~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 179 (606)
T 3t6q_A 100 ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA 179 (606)
T ss_dssp TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTC
T ss_pred hhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhccc
Confidence 99999999999999999987667788999999999999999987544455569999999999999998888889999999
Q ss_pred C--EEEeecCcCCccCcccccCC---------------------------------------------------CCCCEE
Q 038187 241 T--FFNIYSNRINGSIPLEIGNF---------------------------------------------------NFLQVL 267 (560)
Q Consensus 241 ~--~L~l~~n~~~~~~~~~l~~l---------------------------------------------------~~L~~L 267 (560)
+ .|++++|.+.+..|..+... .+|++|
T Consensus 180 ~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L 259 (606)
T 3t6q_A 180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259 (606)
T ss_dssp CSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEE
T ss_pred ceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEE
Confidence 9 88999998887666544321 157788
Q ss_pred ECcCCCCcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCccc
Q 038187 268 DLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRIN 347 (560)
Q Consensus 268 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 347 (560)
++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.
T Consensus 260 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 338 (606)
T 3t6q_A 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338 (606)
T ss_dssp ECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSC
T ss_pred EeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcc
Confidence 88888888777777888999999999999988 67778889999999999999998877888899999999999999988
Q ss_pred ccCCc-CccCCCCCCEEEeecCcCcCCC--chhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCc
Q 038187 348 GSIPL-EIGNFNFLQVLDLSYNKLEGPI--PSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPS 424 (560)
Q Consensus 348 ~~~~~-~~~~l~~L~~L~l~~n~~~~~~--~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~ 424 (560)
+.++. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++++..+.
T Consensus 339 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 418 (606)
T 3t6q_A 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418 (606)
T ss_dssp CBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTC
T ss_pred cccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccc
Confidence 77765 4888999999999999988765 67788999999999999999988888899999999999999999877654
Q ss_pred -cccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCccccc---CchhhhcCCCCCeeeCccCcccccChhhhhc
Q 038187 425 -SVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGP---IPPQLLNCSRLRALSLSNNLLSGSIPSEIGK 500 (560)
Q Consensus 425 -~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~ 500 (560)
.+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+. .+..+..+++|++|++++|++++..|..+..
T Consensus 419 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 498 (606)
T 3t6q_A 419 SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498 (606)
T ss_dssp CTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTT
T ss_pred hhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcc
Confidence 488899999999999999988888899999999999999999863 3356888999999999999999888999999
Q ss_pred CcCCCeeeCcCCcCccccCccCCCCCCCCEEeCCCCcCccccCccCC---CCCCeeeecccC
Q 038187 501 LKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLYGSIPESLR---KVPSLCVDGNNF 559 (560)
Q Consensus 501 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ip~~~~---~l~~l~l~~n~~ 559 (560)
+++|+.|++++|++++..|..+..+++| .|++++|++++.+|..+. +++.|++++|+|
T Consensus 499 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 499 LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp CTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred ccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCc
Confidence 9999999999999999999999999999 999999999988887644 566677999986
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.2e-57 Score=493.06 Aligned_cols=471 Identities=23% Similarity=0.333 Sum_probs=378.0
Q ss_pred cHHHHHHHHcC-------CCCCCC----CCCCCCCCCCCccc---cceecCCCCCeEEEeccccCCCCceeecCCCCccc
Q 038187 42 IQLERKALLGT-------GWWVNN----GATSGNYTSNHCKW---TGISCNSAGSVTGVSLLLYENDNIKGELGRFNFSC 107 (560)
Q Consensus 42 ~~~~~~~ll~~-------~~~~~~----~~~~~~~~~~~C~w---~gv~C~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~ 107 (560)
...|+.||.++ .|.... ....|..+.+||.| .||+|+..+||++++++ +.++.|.+|+ .
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~---~~~l~g~lp~-~--- 100 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLE---GFGASGRVPD-A--- 100 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECT---TSCCEEEECG-G---
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEec---CcccCCcCCh-H---
Confidence 34688998864 232111 12246567899999 99999888999999999 8999999986 5
Q ss_pred cccccccCCCCCccEEECcCCCCC------C------cCccccCCCCCCCEEECCCCCCCCCCCcCCCC-----------
Q 038187 108 FPNLKKMGRLRNLVHLDLSDNYIE------G------YILPTLGHLSKLENLNLSSNALDGNIPSTLGH----------- 164 (560)
Q Consensus 108 ~~~~~~l~~l~~L~~L~L~~n~l~------~------~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~----------- 164 (560)
++++++|++|+|++|.+. + .+|... +.+|| ++++++.+.+.+|..+..
T Consensus 101 ------l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~ 171 (636)
T 4eco_A 101 ------IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQ 171 (636)
T ss_dssp ------GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTT
T ss_pred ------HhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcc
Confidence 899999999999999751 2 122222 33445 555555555555544441
Q ss_pred --------CCCCCEEeCc--CCcCCcCCcccCCCCCCCCEEEcccCCCCcc-----------------CccccC--CCCC
Q 038187 165 --------LTRLTTLAIA--SNQINSSIPLEIENLNFLQVLDLSRNEIGGS-----------------IPSTLG--HLKR 215 (560)
Q Consensus 165 --------l~~L~~L~L~--~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-----------------~~~~l~--~l~~ 215 (560)
...++.+.+. .|.+++ +|..++++++|++|++++|.+++. +|..++ ++++
T Consensus 172 ~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~ 250 (636)
T 4eco_A 172 QKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKD 250 (636)
T ss_dssp SCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT
T ss_pred ccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCC
Confidence 1122222222 567777 788888899999999999988875 888888 8999
Q ss_pred CCEEeCCCCcccccCCccccCCCCCCEEEeecCc-CCc-cCcccccCC------CCCCEEECcCCCCcCCccc--cccCC
Q 038187 216 LRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNR-ING-SIPLEIGNF------NFLQVLDLSYNKLEGPIPS--TIANL 285 (560)
Q Consensus 216 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~l~~l------~~L~~L~L~~n~l~~~~~~--~l~~l 285 (560)
|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.+ ++|++|++++|+++ .+|. .+..+
T Consensus 251 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l 329 (636)
T 4eco_A 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKM 329 (636)
T ss_dssp CCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTC
T ss_pred CCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccC
Confidence 9999999999888889889999999999999998 887 788877776 88999999999988 7887 88889
Q ss_pred CCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCC-CCEEEccCCcccccCCcCccCCC--CCCE
Q 038187 286 VNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLAR-LTTFDMHSNRINGSIPLEIGNFN--FLQV 362 (560)
Q Consensus 286 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~--~L~~ 362 (560)
++|++|++++|.++|.+| .++.+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+...+ +|++
T Consensus 330 ~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~ 406 (636)
T 4eco_A 330 KKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSA 406 (636)
T ss_dssp TTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEE
T ss_pred CCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCE
Confidence 999999999999988888 7888889999999999888 77888888888 999999999988 7787776654 8999
Q ss_pred EEeecCcCcCCCchhcc-------CCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccC-C-----
Q 038187 363 LDLSYNKLEGPIPSTIA-------SLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGH-L----- 429 (560)
Q Consensus 363 L~l~~n~~~~~~~~~l~-------~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~-l----- 429 (560)
|++++|.+.+..|..+. .+++|++|++++|.+++..+..+..+++|+.|++++|+++ .+|..... .
T Consensus 407 L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~ 485 (636)
T 4eco_A 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFK 485 (636)
T ss_dssp EECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECT
T ss_pred EECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccccccc
Confidence 99999999988888777 7788999999999988543344566889999999999988 55554332 2
Q ss_pred --CCCCEEEccCCcCcccCCcccc--CCCCCCeeecccCcccccCchhhhcCCCCCeeeC------ccCcccccChhhhh
Q 038187 430 --TQLTTFDMHSNRINGSIPLEIG--NLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSL------SNNLLSGSIPSEIG 499 (560)
Q Consensus 430 --~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L------s~n~l~~~~p~~l~ 499 (560)
++|++|++++|+++ .+|..+. .+++|++|++++|++++ +|..+..+++|++|++ ++|++.+.+|..+.
T Consensus 486 ~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~ 563 (636)
T 4eco_A 486 NTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563 (636)
T ss_dssp TGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGG
T ss_pred ccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHh
Confidence 28999999999998 7888776 88999999999999997 8888889999999999 56788889999999
Q ss_pred cCcCCCeeeCcCCcCccccCccCCCCCCCCEEeCCCCcCc
Q 038187 500 KLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLY 539 (560)
Q Consensus 500 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~ 539 (560)
++++|+.|++++|++ +.+|..+. ++|+.|++++|++.
T Consensus 564 ~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 564 LCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp GCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred cCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 999999999999999 68898766 79999999999665
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.5e-54 Score=464.28 Aligned_cols=441 Identities=20% Similarity=0.189 Sum_probs=400.4
Q ss_pred CccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEcc
Q 038187 119 NLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLS 198 (560)
Q Consensus 119 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 198 (560)
.+++|++++|.+++..+..|+++++|++|++++|.+.+..|..|+++++|++|++++|.+.+..|..++++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 78999999999999889999999999999999999999889999999999999999999998889999999999999999
Q ss_pred cCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCC--EEECcCCCCcC
Q 038187 199 RNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQ--VLDLSYNKLEG 276 (560)
Q Consensus 199 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~--~L~L~~n~l~~ 276 (560)
+|.+++..+..++++++|++|++++|.+.+.....+..+++|++|++++|.+++..+..++.+++|+ +|++++|.+.+
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc
Confidence 9999987788899999999999999999975444555599999999999999988888899999999 89999999887
Q ss_pred CccccccCC---------------------------------------------------CCCCEEECcCCCCccccCcc
Q 038187 277 PIPSTIANL---------------------------------------------------VNLTSLFLCNNSQTGFIPST 305 (560)
Q Consensus 277 ~~~~~l~~l---------------------------------------------------~~L~~L~l~~n~~~~~~~~~ 305 (560)
..|..+... .+|+.+++++|.+++..+..
T Consensus 194 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~ 273 (606)
T 3t6q_A 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT 273 (606)
T ss_dssp ECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT
T ss_pred cChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHH
Confidence 666544321 16788888999998888888
Q ss_pred cCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCccCCCCCCEEEeecCcCcCCCch-hccCCCCC
Q 038187 306 LGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPS-TIASLVNL 384 (560)
Q Consensus 306 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~~~~L 384 (560)
++.+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.++. .+..+++|
T Consensus 274 ~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred hccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 999999999999999998 7888899999999999999999988788899999999999999999876665 58899999
Q ss_pred CEEeccCCcccccC--cccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCcc-ccCCCCCCeeec
Q 038187 385 TSLFLCNNSQTGFI--PSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLE-IGNLKHVEDVYL 461 (560)
Q Consensus 385 ~~L~l~~n~l~~~~--~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l 461 (560)
++|++++|.+++.. +..+..+++|++|++++|++.+..|..+..+++|++|++++|++.+..+.. +..+++|++|++
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 432 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence 99999999998765 678899999999999999999888999999999999999999999776654 889999999999
Q ss_pred ccCcccccCchhhhcCCCCCeeeCccCccccc---ChhhhhcCcCCCeeeCcCCcCccccCccCCCCCCCCEEeCCCCcC
Q 038187 462 FNNKLDGPIPPQLLNCSRLRALSLSNNLLSGS---IPSEIGKLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNL 538 (560)
Q Consensus 462 ~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~---~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l 538 (560)
++|.+++..|..+..+++|++|++++|++++. .+..+..+++|++|++++|++++..|..|..+++|+.|++++|++
T Consensus 433 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 512 (606)
T 3t6q_A 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512 (606)
T ss_dssp TTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCcc
Confidence 99999998899999999999999999999873 336789999999999999999999999999999999999999999
Q ss_pred ccccCccCCCCCCe--eeecccCC
Q 038187 539 YGSIPESLRKVPSL--CVDGNNFE 560 (560)
Q Consensus 539 ~~~ip~~~~~l~~l--~l~~n~~~ 560 (560)
++.+|..+.+++.| ++++|+++
T Consensus 513 ~~~~~~~l~~l~~L~L~L~~N~l~ 536 (606)
T 3t6q_A 513 TSSSIEALSHLKGIYLNLASNHIS 536 (606)
T ss_dssp CGGGGGGGTTCCSCEEECCSSCCC
T ss_pred CcCChhHhCcccccEEECcCCccc
Confidence 99999998888765 48999874
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.1e-54 Score=475.48 Aligned_cols=478 Identities=23% Similarity=0.308 Sum_probs=330.2
Q ss_pred ccHHHHHHHHcCCCCCCCCCCCCCC-----CCCC--ccc------------cceecCCCCCeEEEeccccCCCCceeecC
Q 038187 41 PIQLERKALLGTGWWVNNGATSGNY-----TSNH--CKW------------TGISCNSAGSVTGVSLLLYENDNIKGELG 101 (560)
Q Consensus 41 ~~~~~~~~ll~~~~~~~~~~~~~~~-----~~~~--C~w------------~gv~C~~~~~v~~l~l~~~~~~~~~~~~~ 101 (560)
+...|+.||++++..... .+|.. ..++ |.| .||+|+..+||+.++|+ +.++.|.+|
T Consensus 266 ~~~~d~~ALl~~k~~l~~--~~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls---~~~L~G~ip 340 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALDG--KNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLA---GFGAKGRVP 340 (876)
T ss_dssp HHHHHHHHHHHHHHHTTG--GGCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECT---TTCCEEEEC
T ss_pred cchHHHHHHHHHHHHcCC--CCCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECc---cCCCCCcCc
Confidence 456799999987543221 13322 2355 999 99999988999999999 899999998
Q ss_pred CCCccccccccccCCCCCccEEEC-cCCCCCCcCccccCCC-CCCCE--------------EEC-CCCCCCC--------
Q 038187 102 RFNFSCFPNLKKMGRLRNLVHLDL-SDNYIEGYILPTLGHL-SKLEN--------------LNL-SSNALDG-------- 156 (560)
Q Consensus 102 ~~~~~~~~~~~~l~~l~~L~~L~L-~~n~l~~~~~~~l~~l-~~L~~--------------L~L-~~n~~~~-------- 156 (560)
+ . ++++++|++|+| ++|.+.|..+-..... ..+.. ++. ....+.+
T Consensus 341 ~-~---------l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~ 410 (876)
T 4ecn_A 341 D-A---------IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR 410 (876)
T ss_dssp G-G---------GGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHT
T ss_pred h-H---------HhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhh
Confidence 7 5 899999999999 8887776532211100 00000 000 0000000
Q ss_pred ---CCCcCCCCCCCCCEEeCcC--CcCCcCCcccCCCCCCCCEEEcccCCCCc-----------------cCccccC--C
Q 038187 157 ---NIPSTLGHLTRLTTLAIAS--NQINSSIPLEIENLNFLQVLDLSRNEIGG-----------------SIPSTLG--H 212 (560)
Q Consensus 157 ---~~~~~~~~l~~L~~L~L~~--n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-----------------~~~~~l~--~ 212 (560)
..+........++.+.+.. |.+++ +|..++++++|++|++++|.+++ .+|..++ +
T Consensus 411 ~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~ 489 (876)
T 4ecn_A 411 NPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN 489 (876)
T ss_dssp CTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG
T ss_pred CccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhcc
Confidence 0010111222233333332 55655 66666677777777777777665 2677766 7
Q ss_pred CCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCc-CCc-cCcccccCC-------CCCCEEECcCCCCcCCccc--c
Q 038187 213 LKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNR-ING-SIPLEIGNF-------NFLQVLDLSYNKLEGPIPS--T 281 (560)
Q Consensus 213 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~l~~l-------~~L~~L~L~~n~l~~~~~~--~ 281 (560)
+++|++|++++|.+.+.+|..++++++|+.|++++|+ +++ .+|..++.+ ++|+.|++++|.+. .+|. .
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~ 568 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASAS 568 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhh
Confidence 7777777777777777777777777777777777776 766 666655444 37777777777777 6676 6
Q ss_pred ccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCC-CCEEEccCCcccccCCcCccCCCC-
Q 038187 282 IANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLAR-LTTFDMHSNRINGSIPLEIGNFNF- 359 (560)
Q Consensus 282 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~- 359 (560)
+.++++|+.|++++|.++ .+| .++.+++|+.|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+...+.
T Consensus 569 l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~ 644 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVY 644 (876)
T ss_dssp HTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSS
T ss_pred hhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccC
Confidence 777777777777777777 566 6777777788888777777 67777777777 888888877777 66666655543
Q ss_pred -CCEEEeecCcCcCCCchhc---c--CCCCCCEEeccCCcccccCcccc-cCCCCCCEEECcCCcccccCCccccC----
Q 038187 360 -LQVLDLSYNKLEGPIPSTI---A--SLVNLTSLFLCNNSQTGFIPSTL-GHLNRLTSLDLSGNNLVGPIPSSVGH---- 428 (560)
Q Consensus 360 -L~~L~l~~n~~~~~~~~~l---~--~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~p~~~~~---- 428 (560)
|+.|++++|.+.+.+|... . .+++|+.|++++|.++. +|..+ ..+++|+.|++++|+++ .+|..+..
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~ 722 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMT-SIPENSLKPKDG 722 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTS
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCC-ccChHHhccccc
Confidence 7788888887776555322 2 33477788888887773 44443 46778888888888777 55554433
Q ss_pred ----CCCCCEEEccCCcCcccCCcccc--CCCCCCeeecccCcccccCchhhhcCCCCCeeeCcc------CcccccChh
Q 038187 429 ----LTQLTTFDMHSNRINGSIPLEIG--NLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSN------NLLSGSIPS 496 (560)
Q Consensus 429 ----l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~------n~l~~~~p~ 496 (560)
+++|++|++++|+++ .+|..+. .+++|+.|++++|++++ +|..+..+++|+.|+|++ |++.+.+|.
T Consensus 723 ~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~ 800 (876)
T 4ecn_A 723 NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800 (876)
T ss_dssp CCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT
T ss_pred cccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChH
Confidence 237888888888887 6777776 78888888888888886 677777888888888865 788889999
Q ss_pred hhhcCcCCCeeeCcCCcCccccCccCCCCCCCCEEeCCCCcCccccCccC
Q 038187 497 EIGKLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLYGSIPESL 546 (560)
Q Consensus 497 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ip~~~ 546 (560)
.+.++++|+.|+|++|++ +.+|..+. ++|+.|||++|++...-+..+
T Consensus 801 ~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~ 847 (876)
T 4ecn_A 801 GITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSV 847 (876)
T ss_dssp TGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGG
T ss_pred HHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHc
Confidence 999999999999999999 78898766 689999999998875444443
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-51 Score=452.29 Aligned_cols=446 Identities=24% Similarity=0.215 Sum_probs=244.0
Q ss_pred CCeEEEeccccCCCCceeecCCCCccccccccccCCCCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCc
Q 038187 81 GSVTGVSLLLYENDNIKGELGRFNFSCFPNLKKMGRLRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPS 160 (560)
Q Consensus 81 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~ 160 (560)
.+++.++++ ++.+.+..+. . +.++++|++|++++|.+++..+..++++++|++|++++|.+++..+.
T Consensus 25 ~~l~~L~Ls---~n~l~~~~~~-~---------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 91 (680)
T 1ziw_A 25 TNITVLNLT---HNQLRRLPAA-N---------FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK 91 (680)
T ss_dssp TTCSEEECC---SSCCCCCCGG-G---------GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTT
T ss_pred CCCcEEECC---CCCCCCcCHH-H---------HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChh
Confidence 468888887 5555543322 2 66777888888888888777777778888888888888877765555
Q ss_pred CCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEcccCCCCccCccccCCCCCCCEEeCCCCcccccCCcccc--CCC
Q 038187 161 TLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLG--HLT 238 (560)
Q Consensus 161 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~--~l~ 238 (560)
.|+++++|++|++++|.+.+..|..++++++|++|++++|.+++..|..+.++++|++|++++|.+++..+..+. .++
T Consensus 92 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 171 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS 171 (680)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTC
T ss_pred hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccc
Confidence 677888888888888877766666777788888888888877777777777777788887777777665554433 346
Q ss_pred CCCEEEeecCcCCccCccc---------------------------------------------------ccCCC--CCC
Q 038187 239 ELTFFNIYSNRINGSIPLE---------------------------------------------------IGNFN--FLQ 265 (560)
Q Consensus 239 ~L~~L~l~~n~~~~~~~~~---------------------------------------------------l~~l~--~L~ 265 (560)
+|++|++++|.+++..|.. +..++ +|+
T Consensus 172 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~ 251 (680)
T 1ziw_A 172 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 251 (680)
T ss_dssp EESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCC
T ss_pred cccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCC
Confidence 6666666666665544433 33332 266
Q ss_pred EEECcCCCCcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcc-----cCCc----cccCCCCC
Q 038187 266 VLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVG-----PIPS----SMGHLARL 336 (560)
Q Consensus 266 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-----~~~~----~~~~l~~L 336 (560)
+|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|...+ .+|. .+..+++|
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L 331 (680)
T 1ziw_A 252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL 331 (680)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTC
T ss_pred EEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCC
Confidence 66666666655555556666666666666666555555444444444444444332211 1111 33444555
Q ss_pred CEEEccCCcccccCCcCccCCCCCCEEEeecC----------------------------cCcCCCchhccCCCCCCEEe
Q 038187 337 TTFDMHSNRINGSIPLEIGNFNFLQVLDLSYN----------------------------KLEGPIPSTIASLVNLTSLF 388 (560)
Q Consensus 337 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n----------------------------~~~~~~~~~l~~~~~L~~L~ 388 (560)
++|++++|.+.+..+..+..+++|++|++++| .+.+..|..+..+++|+.|+
T Consensus 332 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 411 (680)
T 1ziw_A 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411 (680)
T ss_dssp CEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEe
Confidence 55555555555444444444444444444333 33333344444555555555
Q ss_pred ccCCcccccCc-ccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCc--ccCCccccCCCCCCeeecccCc
Q 038187 389 LCNNSQTGFIP-STLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRIN--GSIPLEIGNLKHVEDVYLFNNK 465 (560)
Q Consensus 389 l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~ 465 (560)
+++|.+++.++ ..+..+++|++|++++|++++..+..+..+++|++|++++|.+. +.+|..+..+++|++|++++|+
T Consensus 412 L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~ 491 (680)
T 1ziw_A 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN 491 (680)
T ss_dssp CCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC
T ss_pred CCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC
Confidence 55555554333 34444555555555555544333333333333333333333332 2334444444445555555555
Q ss_pred ccccCchhhhcCCCCCeeeCccCcccccCh--------hhhhcCcCCCeeeCcCCcCccccCccCCCCCCCCEEeCCCCc
Q 038187 466 LDGPIPPQLLNCSRLRALSLSNNLLSGSIP--------SEIGKLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNN 537 (560)
Q Consensus 466 l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p--------~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~ 537 (560)
+++..+..+..+++|++|++++|++++..+ ..+.++++|+.|++++|+++...+..|..+++|+.|++++|+
T Consensus 492 l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 571 (680)
T 1ziw_A 492 IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN 571 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCC
Confidence 444444444444444444444444443211 113344444444444444442112234444444444444444
Q ss_pred Cc
Q 038187 538 LY 539 (560)
Q Consensus 538 l~ 539 (560)
++
T Consensus 572 l~ 573 (680)
T 1ziw_A 572 LN 573 (680)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.8e-52 Score=449.05 Aligned_cols=456 Identities=21% Similarity=0.189 Sum_probs=385.0
Q ss_pred CCeEEEeccccCCCCceeecCCCCccccccccccCCCCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCc
Q 038187 81 GSVTGVSLLLYENDNIKGELGRFNFSCFPNLKKMGRLRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPS 160 (560)
Q Consensus 81 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~ 160 (560)
.+++.++++ ++.+.+..+. . +.++++|++|++++|.+++..+..|+++++|++|++++|.+.+..|.
T Consensus 32 ~~l~~L~Ls---~n~l~~~~~~-~---------~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 98 (606)
T 3vq2_A 32 SSTKNIDLS---FNPLKILKSY-S---------FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG 98 (606)
T ss_dssp TTCCEEECT---TSCCCEECTT-T---------TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT
T ss_pred CCcCEEECC---CCCcCEeChh-h---------ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh
Confidence 468888887 6666655443 3 78889999999999999988888899999999999999999988899
Q ss_pred CCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEcccCCCCc-cCccccCCCCCCCEEeCCCCcccccCCccccCCCC
Q 038187 161 TLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGG-SIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTE 239 (560)
Q Consensus 161 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 239 (560)
.|+++++|++|++++|.+.+..+..++++++|++|++++|.+++ .+|..++++++|++|++++|++++..+..++.+++
T Consensus 99 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 178 (606)
T 3vq2_A 99 SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178 (606)
T ss_dssp SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHH
T ss_pred hcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhc
Confidence 99999999999999999987776789999999999999999886 56888999999999999999998877777776655
Q ss_pred CC----EEEeecCcCCccCcccccCCCCCCEEECcCCCCc----------------------------------------
Q 038187 240 LT----FFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLE---------------------------------------- 275 (560)
Q Consensus 240 L~----~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~---------------------------------------- 275 (560)
|+ +|++++|.+++..+..+... +|++|++++|.+.
T Consensus 179 L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~ 257 (606)
T 3vq2_A 179 NPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEG 257 (606)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTT
T ss_pred cccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhh
Confidence 54 78888888875544444333 6777777776543
Q ss_pred ------------------CCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCC
Q 038187 276 ------------------GPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLT 337 (560)
Q Consensus 276 ------------------~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 337 (560)
+..|. +..+++|+.|+++++.+.. +| .+..+++|++|++++|.+ +.+|. + .+++|+
T Consensus 258 l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~ 331 (606)
T 3vq2_A 258 LCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLK 331 (606)
T ss_dssp GGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCC
T ss_pred hhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-ccccc-C-CCCccc
Confidence 22333 5566788888888888864 44 688888999999999998 67774 4 889999
Q ss_pred EEEccCCcccccCCcCccCCCCCCEEEeecCcCcCC--CchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcC
Q 038187 338 TFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGP--IPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSG 415 (560)
Q Consensus 338 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~ 415 (560)
+|++++|...+.. .+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++ +|..+..+++|+.|++++
T Consensus 332 ~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~ 408 (606)
T 3vq2_A 332 SLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQH 408 (606)
T ss_dssp EEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTT
T ss_pred eeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCC
Confidence 9999999665544 566889999999999998865 47888899999999999999886 557888999999999999
Q ss_pred CcccccCC-ccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccc-cCchhhhcCCCCCeeeCccCccccc
Q 038187 416 NNLVGPIP-SSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDG-PIPPQLLNCSRLRALSLSNNLLSGS 493 (560)
Q Consensus 416 n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~~~~L~~L~Ls~n~l~~~ 493 (560)
|++.+..| ..+..+++|++|++++|++.+..|..+..+++|++|++++|++.+ .+|..+..+++|++|++++|++++.
T Consensus 409 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 488 (606)
T 3vq2_A 409 STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488 (606)
T ss_dssp SEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred CccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCcc
Confidence 99998777 688899999999999999999899999999999999999999997 4788899999999999999999999
Q ss_pred ChhhhhcCcCCCeeeCcCCcCccccCccCCCCCCCCEEeCCCCcCccccCccCCC----CCCeeeecccCC
Q 038187 494 IPSEIGKLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLYGSIPESLRK----VPSLCVDGNNFE 560 (560)
Q Consensus 494 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ip~~~~~----l~~l~l~~n~~~ 560 (560)
.|..+..+++|++|++++|++++.+|..+..+++|+.|++++|+++ .+|..+.+ ++.|++++|+|.
T Consensus 489 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 489 SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCC
T ss_pred ChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcc
Confidence 9999999999999999999999999999999999999999999999 78876554 566679999874
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.2e-51 Score=444.93 Aligned_cols=447 Identities=23% Similarity=0.252 Sum_probs=328.7
Q ss_pred cCCCCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCC--CCCC
Q 038187 114 MGRLRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIE--NLNF 191 (560)
Q Consensus 114 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~--~l~~ 191 (560)
+..+++|++|++++|.+++..+..|+++++|++|++++|.+.+..|..++++++|++|++++|.+++..+..+. .+++
T Consensus 93 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 172 (680)
T 1ziw_A 93 FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS 172 (680)
T ss_dssp TTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCE
T ss_pred hccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccc
Confidence 34444445555544444444444444445555555555444444444444445555555555444433333221 3344
Q ss_pred CCEEEcccCCCCccCccccCCC---------------------------CCCCEEeCCCCcccccCCccccCCCC--CCE
Q 038187 192 LQVLDLSRNEIGGSIPSTLGHL---------------------------KRLRSLDLSLNELVGPIPSSLGHLTE--LTF 242 (560)
Q Consensus 192 L~~L~l~~n~~~~~~~~~l~~l---------------------------~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~ 242 (560)
|++|++++|.+++..|..+..+ ++|++|++++|.+.+..|..+..++. |++
T Consensus 173 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~ 252 (680)
T 1ziw_A 173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252 (680)
T ss_dssp ESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCE
T ss_pred ccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCE
Confidence 5555555555544444333222 34556666666666666666666644 999
Q ss_pred EEeecCcCCccCcccccCCCCCCEEECcCCCCcCCccccccCCCCCCEEECcCCCCcc-----ccCc----ccCCCCCCC
Q 038187 243 FNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTG-----FIPS----TLGHLNRLT 313 (560)
Q Consensus 243 L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-----~~~~----~l~~l~~L~ 313 (560)
|++++|.+++..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|...+ .+|. .+..+++|+
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~ 332 (680)
T 1ziw_A 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCC
T ss_pred EECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCC
Confidence 9999999998888899999999999999999988777777777777777777654332 1221 455666777
Q ss_pred EEEccCCcCcccCCccccCCCCCCEEE----------------------------ccCCcccccCCcCccCCCCCCEEEe
Q 038187 314 SLDLSGNNLVGPIPSSMGHLARLTTFD----------------------------MHSNRINGSIPLEIGNFNFLQVLDL 365 (560)
Q Consensus 314 ~L~l~~n~~~~~~~~~~~~l~~L~~L~----------------------------l~~n~l~~~~~~~~~~l~~L~~L~l 365 (560)
+|++++|.+.+..+..+..+++|++|+ +++|++++..|..+..+++|++|++
T Consensus 333 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 412 (680)
T 1ziw_A 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 412 (680)
T ss_dssp EEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred EEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeC
Confidence 777777766665555555555555554 5555666666778889999999999
Q ss_pred ecCcCcCCCc-hhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCccc--ccCCccccCCCCCCEEEccCCcC
Q 038187 366 SYNKLEGPIP-STIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLV--GPIPSSVGHLTQLTTFDMHSNRI 442 (560)
Q Consensus 366 ~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~l~~n~l 442 (560)
++|.+.+.+| ..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+. +.+|..+..+++|++|++++|++
T Consensus 413 ~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l 492 (680)
T 1ziw_A 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492 (680)
T ss_dssp CSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCC
T ss_pred CCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCC
Confidence 9999987666 68889999999999999999888889999999999999999986 57888999999999999999999
Q ss_pred cccCCccccCCCCCCeeecccCcccccCc--------hhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcC
Q 038187 443 NGSIPLEIGNLKHVEDVYLFNNKLDGPIP--------PQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFI 514 (560)
Q Consensus 443 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 514 (560)
++..+..+..+++|++|++++|++++..+ ..+..+++|++|++++|+++...+..+.++++|+.|++++|++
T Consensus 493 ~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 572 (680)
T 1ziw_A 493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL 572 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCC
Confidence 98777889999999999999999986422 2378899999999999999954445789999999999999999
Q ss_pred ccccCccCCCCCCCCEEeCCCCcCccccCc----cCCCCCCeeeecccCC
Q 038187 515 NGKIPSQLGEIPSIDTVNLCTNNLYGSIPE----SLRKVPSLCVDGNNFE 560 (560)
Q Consensus 515 ~~~~p~~l~~l~~L~~L~ls~n~l~~~ip~----~~~~l~~l~l~~n~~~ 560 (560)
++..+..|..+++|+.|++++|++++..|. .+.+++.+++++|+|.
T Consensus 573 ~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 573 NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred CcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcc
Confidence 976677789999999999999999988776 3567888889999874
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-51 Score=458.28 Aligned_cols=470 Identities=21% Similarity=0.248 Sum_probs=388.7
Q ss_pred ccccceecCCCCCeEEEeccccCCCCceeecCCCCccccccccccCCCCCccEEECcCCCCCCcC-ccccCCCCCCCEEE
Q 038187 70 CKWTGISCNSAGSVTGVSLLLYENDNIKGELGRFNFSCFPNLKKMGRLRNLVHLDLSDNYIEGYI-LPTLGHLSKLENLN 148 (560)
Q Consensus 70 C~w~gv~C~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~ 148 (560)
|.|..|-+ -..+++.++++ .+.+.+..+. . +.++++|++|++++|.+.+.+ +..|+++++|++|+
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs---~N~i~~i~~~-~---------~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~ 79 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLS---FNYIRTVTAS-S---------FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEE---SCCCCEECSS-S---------CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEE
T ss_pred CCCCCCCC-CCCCcCEEECC---CCcCCccChh-H---------CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEE
Confidence 57888877 66789999998 7777765554 4 889999999999999766655 78899999999999
Q ss_pred CCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCccc--CCCCCCCCEEEcccCCCCccCc-cccCCCCCCCEEeCCCCc
Q 038187 149 LSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLE--IENLNFLQVLDLSRNEIGGSIP-STLGHLKRLRSLDLSLNE 225 (560)
Q Consensus 149 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~L~~n~ 225 (560)
|++|.+.+..|..|+++++|++|++++|.+.+.+|.. +.++++|++|++++|.+++..+ ..++++++|++|++++|.
T Consensus 80 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 80 LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp CTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred CCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 9999999888999999999999999999998766654 8999999999999999987655 578999999999999999
Q ss_pred ccccCCccccCC--CCCCEEEeecCcCCccCcccccCCCC------CCEEECcCCCCcCCccccccC-------------
Q 038187 226 LVGPIPSSLGHL--TELTFFNIYSNRINGSIPLEIGNFNF------LQVLDLSYNKLEGPIPSTIAN------------- 284 (560)
Q Consensus 226 l~~~~~~~l~~l--~~L~~L~l~~n~~~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~l~~------------- 284 (560)
+++..+..+..+ ++|+.|++++|.+.+..+..+..+.+ |++|++++|.+.+..+..+..
T Consensus 160 i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~ 239 (844)
T 3j0a_A 160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239 (844)
T ss_dssp CCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECC
T ss_pred CCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecc
Confidence 998888888877 88999999999998888777766655 899999988776555443321
Q ss_pred -------------------------CCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEE
Q 038187 285 -------------------------LVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTF 339 (560)
Q Consensus 285 -------------------------l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 339 (560)
.++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..|..+++|++|
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 319 (844)
T 3j0a_A 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319 (844)
T ss_dssp SSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEE
T ss_pred cccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEE
Confidence 2578888888888888888888888889999999888888778888888889999
Q ss_pred EccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCccc
Q 038187 340 DMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLV 419 (560)
Q Consensus 340 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 419 (560)
++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.. .+++|+.|++++|+++
T Consensus 320 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLV 394 (844)
T ss_dssp EEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCC
T ss_pred ECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc-----CCCCcchhccCCCCcc
Confidence 99988888777888888888999999888888777777888888888888888877431 2445555555555544
Q ss_pred --------------------ccC-CccccCCCCCCEEEccCCcCcccCCc-cccCCCCCCeeecccCccc-----ccCch
Q 038187 420 --------------------GPI-PSSVGHLTQLTTFDMHSNRINGSIPL-EIGNLKHVEDVYLFNNKLD-----GPIPP 472 (560)
Q Consensus 420 --------------------~~~-p~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~-----~~~~~ 472 (560)
+.. +..+..+++|++|++++|++++..+. .+..+++|+.|++++|.++ +..+.
T Consensus 395 ~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~ 474 (844)
T 3j0a_A 395 TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474 (844)
T ss_dssp CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSS
T ss_pred cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchh
Confidence 211 11245788999999999999864433 3556789999999999987 34456
Q ss_pred hhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCccccCccCCCCCCCCEEeCCCCcCccccCccCCCCCCe
Q 038187 473 QLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLYGSIPESLRKVPSL 552 (560)
Q Consensus 473 ~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ip~~~~~l~~l 552 (560)
.+..+++|++|+|++|++++..|..+..+++|+.|+|++|++++..|..+. ++|+.|++++|++++.+|..+.++..|
T Consensus 475 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~~l 552 (844)
T 3j0a_A 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLSVL 552 (844)
T ss_dssp CSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCCEE
T ss_pred hhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCcCEE
Confidence 688899999999999999998888899999999999999999987776665 899999999999999999999999999
Q ss_pred eeecccCC
Q 038187 553 CVDGNNFE 560 (560)
Q Consensus 553 ~l~~n~~~ 560 (560)
++++|+|.
T Consensus 553 ~l~~Np~~ 560 (844)
T 3j0a_A 553 DITHNKFI 560 (844)
T ss_dssp EEEEECCC
T ss_pred EecCCCcc
Confidence 99999874
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.9e-50 Score=436.58 Aligned_cols=440 Identities=24% Similarity=0.197 Sum_probs=388.0
Q ss_pred CCCeEEEeccccCCCCceeecCCCCccccccccccCCCCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCC
Q 038187 80 AGSVTGVSLLLYENDNIKGELGRFNFSCFPNLKKMGRLRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIP 159 (560)
Q Consensus 80 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~ 159 (560)
..+++.++++ ++.+.+..|. . +.++++|++|++++|.+++..|..|+++++|++|++++|.+.+..+
T Consensus 55 l~~L~~L~Ls---~n~l~~i~~~-~---------~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~ 121 (606)
T 3vq2_A 55 FSELQWLDLS---RCEIETIEDK-A---------WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLES 121 (606)
T ss_dssp CTTCCEEECT---TCCCCEECTT-T---------TTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSS
T ss_pred CccCcEEeCC---CCcccccCHH-H---------hhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccc
Confidence 4578889998 6666665443 3 7899999999999999999989999999999999999999998887
Q ss_pred cCCCCCCCCCEEeCcCCcCCc-CCcccCCCCCCCCEEEcccCCCCccCccccCCCCCCC----EEeCCCCcccccCCccc
Q 038187 160 STLGHLTRLTTLAIASNQINS-SIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLR----SLDLSLNELVGPIPSSL 234 (560)
Q Consensus 160 ~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~----~L~L~~n~l~~~~~~~l 234 (560)
..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+++|+ +|++++|.+++..+..+
T Consensus 122 ~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~ 201 (606)
T 3vq2_A 122 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF 201 (606)
T ss_dssp SCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTT
T ss_pred cccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccc
Confidence 889999999999999999986 5799999999999999999999988787777666554 89999999986665555
Q ss_pred cCCCCCCEEEeecCcCC----------------------------------------------------------ccCcc
Q 038187 235 GHLTELTFFNIYSNRIN----------------------------------------------------------GSIPL 256 (560)
Q Consensus 235 ~~l~~L~~L~l~~n~~~----------------------------------------------------------~~~~~ 256 (560)
... +|++|++++|.+. +..|.
T Consensus 202 ~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~ 280 (606)
T 3vq2_A 202 QGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280 (606)
T ss_dssp TTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS
T ss_pred cCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc
Confidence 544 8888888887653 22233
Q ss_pred cccCCCCCCEEECcCCCCcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCC
Q 038187 257 EIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARL 336 (560)
Q Consensus 257 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 336 (560)
+..+++|+.|+++++.+. .+| .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|...+.. .+..+++|
T Consensus 281 -~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L 352 (606)
T 3vq2_A 281 -FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSL 352 (606)
T ss_dssp -CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTC
T ss_pred -cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCC
Confidence 566789999999999986 456 788999999999999999 6777 45 8999999999999766554 57799999
Q ss_pred CEEEccCCccccc--CCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCc-ccccCCCCCCEEEC
Q 038187 337 TTFDMHSNRINGS--IPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIP-STLGHLNRLTSLDL 413 (560)
Q Consensus 337 ~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L 413 (560)
++|++++|.+++. .+..+..+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+..+ ..+..+++|+.|++
T Consensus 353 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 431 (606)
T 3vq2_A 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431 (606)
T ss_dssp CEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEEC
T ss_pred CEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEEC
Confidence 9999999999866 37788899999999999999885 55788899999999999999998877 67899999999999
Q ss_pred cCCcccccCCccccCCCCCCEEEccCCcCcc-cCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccc
Q 038187 414 SGNNLVGPIPSSVGHLTQLTTFDMHSNRING-SIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSG 492 (560)
Q Consensus 414 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~ 492 (560)
++|++++..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++
T Consensus 432 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 511 (606)
T 3vq2_A 432 SYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511 (606)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCC
Confidence 9999999999999999999999999999998 478899999999999999999999999999999999999999999999
Q ss_pred cChhhhhcCcCCCeeeCcCCcCccccCccCCCCC-CCCEEeCCCCcCccccC
Q 038187 493 SIPSEIGKLKELYYLDLSQNFINGKIPSQLGEIP-SIDTVNLCTNNLYGSIP 543 (560)
Q Consensus 493 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~ls~n~l~~~ip 543 (560)
.+|..+..+++|+.|++++|+++ .+|..+..++ +|+.+++++|++.+..+
T Consensus 512 ~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 512 LDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp EEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred cCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 99999999999999999999999 6888899987 59999999999997554
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.7e-50 Score=432.35 Aligned_cols=425 Identities=20% Similarity=0.198 Sum_probs=223.6
Q ss_pred cCCCCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCC
Q 038187 114 MGRLRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQ 193 (560)
Q Consensus 114 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 193 (560)
+..+++|++|++++|.+++..+..|+++++|++|++++|.+.+..|..|+++++|++|++++|.+.+..+..++++++|+
T Consensus 48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 127 (570)
T 2z63_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127 (570)
T ss_dssp TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCC
T ss_pred hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcccccccccc
Confidence 56666677777777766666566666677777777777766665566666677777777777666654444566667777
Q ss_pred EEEcccCCCCc-cCccccCCCCCCCEEeCCCCcccccCCccccCCCCC----CEEEeecCcCCccCcccccCCCCCCEEE
Q 038187 194 VLDLSRNEIGG-SIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTEL----TFFNIYSNRINGSIPLEIGNFNFLQVLD 268 (560)
Q Consensus 194 ~L~l~~n~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 268 (560)
+|++++|.+++ .+|..++++++|++|++++|.+++..+..++.+++| +.+++++|.+.+..+..+... +|++|+
T Consensus 128 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~ 206 (570)
T 2z63_A 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLT 206 (570)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEE
T ss_pred EEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEe
Confidence 77777766665 356666666777777777776666555666666666 666676666665555555443 566666
Q ss_pred CcCCCCcC-CccccccCCCC--------------------------------CCEEECcCC-CCccccCcccCCCCCCCE
Q 038187 269 LSYNKLEG-PIPSTIANLVN--------------------------------LTSLFLCNN-SQTGFIPSTLGHLNRLTS 314 (560)
Q Consensus 269 L~~n~l~~-~~~~~l~~l~~--------------------------------L~~L~l~~n-~~~~~~~~~l~~l~~L~~ 314 (560)
+++|.... .++..+..++. ++.+++..+ .+.+..+..+..+++|++
T Consensus 207 l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~ 286 (570)
T 2z63_A 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286 (570)
T ss_dssp EESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSE
T ss_pred cccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccE
Confidence 65542110 00000000000 111111111 222333444444555555
Q ss_pred EEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcc
Q 038187 315 LDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQ 394 (560)
Q Consensus 315 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 394 (560)
|++++|.+. .+|..+..+ +|++|++++|.+. .+|. ..+++|++|++++|.+.+..+. ..+++|++|++++|.+
T Consensus 287 L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l 359 (570)
T 2z63_A 287 FSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGL 359 (570)
T ss_dssp EEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCC
T ss_pred EEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCcc
Confidence 555555554 344444444 5555555555554 3332 2344555555555554443332 3445555555555554
Q ss_pred cccC--cccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCC-ccccCCCCCCeeecccCcccccCc
Q 038187 395 TGFI--PSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIP-LEIGNLKHVEDVYLFNNKLDGPIP 471 (560)
Q Consensus 395 ~~~~--~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~ 471 (560)
++.. +..+..+++|++|++++|++++..+ .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|++.+..|
T Consensus 360 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 438 (570)
T 2z63_A 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438 (570)
T ss_dssp BEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT
T ss_pred CccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch
Confidence 4332 3344445555555555555443222 24455555555555555544333 234445555555555555554444
Q ss_pred hhhhcCCCCCeeeCccCccc-ccChhhhhcCcCCCeeeCcCCcCccccCccCCCCCCCCEEeCCCCcCccccCccCC
Q 038187 472 PQLLNCSRLRALSLSNNLLS-GSIPSEIGKLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLYGSIPESLR 547 (560)
Q Consensus 472 ~~l~~~~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ip~~~~ 547 (560)
..+..+++|++|++++|.++ +.+|..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..|..+.
T Consensus 439 ~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 515 (570)
T 2z63_A 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515 (570)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhh
Confidence 45555555555555555554 34444555555555555555555544455555555555555555555544444443
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-49 Score=425.68 Aligned_cols=422 Identities=23% Similarity=0.232 Sum_probs=370.0
Q ss_pred cCCCCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCc-CCcccCCCCCCC
Q 038187 114 MGRLRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINS-SIPLEIENLNFL 192 (560)
Q Consensus 114 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L 192 (560)
+.++++|++|++++|.+++..+..|+++++|++|++++|.+.+..+..++++++|++|++++|.+.+ .+|..++++++|
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L 151 (570)
T 2z63_A 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151 (570)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred ccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCC
Confidence 7889999999999999999888999999999999999999997766679999999999999999986 478999999999
Q ss_pred CEEEcccCCCCccCccccCCCCCC----CEEeCCCCcccccCCccccCCCCCCEEEeecCcCCc-cCcccccCCCC----
Q 038187 193 QVLDLSRNEIGGSIPSTLGHLKRL----RSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRING-SIPLEIGNFNF---- 263 (560)
Q Consensus 193 ~~L~l~~n~~~~~~~~~l~~l~~L----~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~---- 263 (560)
++|++++|.+++..+..++.+++| ++|++++|.+.+..+..+... +|+.|++++|.... ..+..+..++.
T Consensus 152 ~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~ 230 (570)
T 2z63_A 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 230 (570)
T ss_dssp CEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEE
T ss_pred CEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCcccccee
Confidence 999999999998888888888888 899999999998888877766 89999999874331 12222223332
Q ss_pred ----------------------------CCEEECcCC-CCcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCE
Q 038187 264 ----------------------------LQVLDLSYN-KLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTS 314 (560)
Q Consensus 264 ----------------------------L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 314 (560)
++.+++.++ .+.+..+..+..+++|+.|++++|.+. .+|..+..+ +|++
T Consensus 231 ~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~ 308 (570)
T 2z63_A 231 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQH 308 (570)
T ss_dssp EEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSE
T ss_pred eeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccE
Confidence 344555555 556667788888999999999999988 577888888 9999
Q ss_pred EEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCccCCCCCCEEEeecCcCcCCC--chhccCCCCCCEEeccCC
Q 038187 315 LDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPI--PSTIASLVNLTSLFLCNN 392 (560)
Q Consensus 315 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~l~~~~~L~~L~l~~n 392 (560)
|++++|.+. .+|. ..+++|++|++++|.+.+..+. ..+++|++|++++|.+.+.. +..+..+++|++|++++|
T Consensus 309 L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n 383 (570)
T 2z63_A 309 LELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383 (570)
T ss_dssp EEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSC
T ss_pred EeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCC
Confidence 999999998 5665 5789999999999999876654 67899999999999998654 678889999999999999
Q ss_pred cccccCcccccCCCCCCEEECcCCcccccCC-ccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCccc-ccC
Q 038187 393 SQTGFIPSTLGHLNRLTSLDLSGNNLVGPIP-SSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLD-GPI 470 (560)
Q Consensus 393 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~ 470 (560)
.+.+..+. +..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++. +.+
T Consensus 384 ~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 462 (570)
T 2z63_A 384 GVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462 (570)
T ss_dssp SEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred cccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccc
Confidence 99876544 8999999999999999987766 56889999999999999999999999999999999999999998 578
Q ss_pred chhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCccccCccCCCCCCCCEEeCCCCcCccccCc
Q 038187 471 PPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLYGSIPE 544 (560)
Q Consensus 471 ~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ip~ 544 (560)
|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|+.+++++|++++.+|.
T Consensus 463 p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 88999999999999999999998899999999999999999999998888899999999999999999998875
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.7e-49 Score=440.82 Aligned_cols=438 Identities=23% Similarity=0.249 Sum_probs=369.7
Q ss_pred CCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCC-CcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEE
Q 038187 117 LRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNI-PSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVL 195 (560)
Q Consensus 117 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 195 (560)
.+++++|++++|.+++..+..|.++++|++|+|++|...+.+ |..|+++++|++|+|++|.+.+..|..|.++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 468999999999999999999999999999999999766666 7889999999999999999998889999999999999
Q ss_pred EcccCCCCccCccc--cCCCCCCCEEeCCCCcccccCC-ccccCCCCCCEEEeecCcCCccCcccccCC--CCCCEEECc
Q 038187 196 DLSRNEIGGSIPST--LGHLKRLRSLDLSLNELVGPIP-SSLGHLTELTFFNIYSNRINGSIPLEIGNF--NFLQVLDLS 270 (560)
Q Consensus 196 ~l~~n~~~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l--~~L~~L~L~ 270 (560)
++++|.+++.+|.. +.++++|++|++++|.+++..+ ..|+++++|++|++++|.+++..+..+..+ ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 99999999866665 8999999999999999987655 579999999999999999999888888877 899999999
Q ss_pred CCCCcCCccccccCCCC------CCEEECcCCCCccccCcccCC------------------------------------
Q 038187 271 YNKLEGPIPSTIANLVN------LTSLFLCNNSQTGFIPSTLGH------------------------------------ 308 (560)
Q Consensus 271 ~n~l~~~~~~~l~~l~~------L~~L~l~~n~~~~~~~~~l~~------------------------------------ 308 (560)
.|.+.+..|..+..+++ |+.|++++|.+.+..+..+..
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 99999888877776655 999999999776554433321
Q ss_pred --CCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCE
Q 038187 309 --LNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTS 386 (560)
Q Consensus 309 --l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 386 (560)
.++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence 267999999999998888888899999999999999999888888999999999999999998888888999999999
Q ss_pred EeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCc------------------
Q 038187 387 LFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPL------------------ 448 (560)
Q Consensus 387 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~------------------ 448 (560)
|++++|.+.+..+..+..+++|+.|++++|.+++. + .+++|+.|++++|+++ .+|.
T Consensus 343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~----~~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l 416 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-H----FIPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENL 416 (844)
T ss_dssp EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-S----SCCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSS
T ss_pred EECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-c----CCCCcchhccCCCCcc-cccccccccceeecccCccccC
Confidence 99999999887777888899999999999988742 2 2566677776666665 3332
Q ss_pred ----cccCCCCCCeeecccCcccccCch-hhhcCCCCCeeeCccCccc-----ccChhhhhcCcCCCeeeCcCCcCcccc
Q 038187 449 ----EIGNLKHVEDVYLFNNKLDGPIPP-QLLNCSRLRALSLSNNLLS-----GSIPSEIGKLKELYYLDLSQNFINGKI 518 (560)
Q Consensus 449 ----~~~~l~~L~~L~l~~n~l~~~~~~-~l~~~~~L~~L~Ls~n~l~-----~~~p~~l~~l~~L~~L~L~~n~l~~~~ 518 (560)
.+..+++|++|++++|++++..+. .+..+++|+.|++++|.++ +..+..+..+++|+.|+|++|++++..
T Consensus 417 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 496 (844)
T 3j0a_A 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLP 496 (844)
T ss_dssp TTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCC
T ss_pred chhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccC
Confidence 133677888888888888754332 3455778888888888886 344556788899999999999999888
Q ss_pred CccCCCCCCCCEEeCCCCcCccccCccC-CCCCCeeeecccCC
Q 038187 519 PSQLGEIPSIDTVNLCTNNLYGSIPESL-RKVPSLCVDGNNFE 560 (560)
Q Consensus 519 p~~l~~l~~L~~L~ls~n~l~~~ip~~~-~~l~~l~l~~n~~~ 560 (560)
|..|..+++|+.|+|++|++++..|..+ .+|+.|++++|+++
T Consensus 497 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~ 539 (844)
T 3j0a_A 497 PGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLL 539 (844)
T ss_dssp TTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCC
T ss_pred hhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCC
Confidence 8889999999999999999997666655 47888889999874
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.5e-51 Score=443.67 Aligned_cols=431 Identities=18% Similarity=0.268 Sum_probs=374.3
Q ss_pred CCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCC------CC------CCCcCCCCCCCCCEEeCcCCcCCcCCccc
Q 038187 118 RNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNAL------DG------NIPSTLGHLTRLTTLAIASNQINSSIPLE 185 (560)
Q Consensus 118 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~------~~------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 185 (560)
.+++.|+|+++.+.|.+|+.++++++|++|+|++|.+ .+ .+|... +.+|+ ++++.+.+.+.+|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 4789999999999999999999999999999999965 22 233322 44566 777777777776665
Q ss_pred CCC-------------------CCCCCEEEcc--cCCCCccCccccCCCCCCCEEeCCCCccccc---------------
Q 038187 186 IEN-------------------LNFLQVLDLS--RNEIGGSIPSTLGHLKRLRSLDLSLNELVGP--------------- 229 (560)
Q Consensus 186 l~~-------------------l~~L~~L~l~--~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~--------------- 229 (560)
+.. ...++.+.+. .|.+++ +|..++++++|++|++++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 236 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ 236 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhc
Confidence 541 1122323232 567887 899999999999999999999986
Q ss_pred --CCcccc--CCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCC-CcC-CccccccCC------CCCCEEECcCCC
Q 038187 230 --IPSSLG--HLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNK-LEG-PIPSTIANL------VNLTSLFLCNNS 297 (560)
Q Consensus 230 --~~~~l~--~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~L~l~~n~ 297 (560)
+|+.++ ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..+..+ ++|++|++++|.
T Consensus 237 ~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp HHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred ccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 999999 99999999999999999999999999999999999998 998 889888776 899999999999
Q ss_pred CccccCc--ccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCccCCCC-CCEEEeecCcCcCCC
Q 038187 298 QTGFIPS--TLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNF-LQVLDLSYNKLEGPI 374 (560)
Q Consensus 298 ~~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~ 374 (560)
++ .+|. .++.+++|++|++++|.+.|.+| .++.+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+
T Consensus 317 l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~l 392 (636)
T 4eco_A 317 LK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YI 392 (636)
T ss_dssp CS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SC
T ss_pred CC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-cc
Confidence 99 7888 89999999999999999999999 8999999999999999999 88888999999 999999999999 78
Q ss_pred chhccCCC--CCCEEeccCCcccccCccccc-------CCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCccc
Q 038187 375 PSTIASLV--NLTSLFLCNNSQTGFIPSTLG-------HLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGS 445 (560)
Q Consensus 375 ~~~l~~~~--~L~~L~l~~n~l~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 445 (560)
|..+...+ +|++|++++|.+++.+|..+. .+++|+.|++++|++++..+..+..+++|++|++++|+++ .
T Consensus 393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~ 471 (636)
T 4eco_A 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-E 471 (636)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-B
T ss_pred chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-C
Confidence 88777654 899999999999999988888 7889999999999999444444567999999999999999 6
Q ss_pred CCcccc-C-------CCCCCeeecccCcccccCchhhh--cCCCCCeeeCccCcccccChhhhhcCcCCCeeeC------
Q 038187 446 IPLEIG-N-------LKHVEDVYLFNNKLDGPIPPQLL--NCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDL------ 509 (560)
Q Consensus 446 ~~~~~~-~-------l~~L~~L~l~~n~l~~~~~~~l~--~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L------ 509 (560)
+|.... . +++|++|++++|+++ .+|..+. .+++|++|++++|++++ +|..+.++++|+.|++
T Consensus 472 i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~l 549 (636)
T 4eco_A 472 IPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDA 549 (636)
T ss_dssp CCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCT
T ss_pred cCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCccc
Confidence 665433 2 239999999999999 6888887 99999999999999997 9999999999999999
Q ss_pred cCCcCccccCccCCCCCCCCEEeCCCCcCccccCccC-CCCCCeeeecccCC
Q 038187 510 SQNFINGKIPSQLGEIPSIDTVNLCTNNLYGSIPESL-RKVPSLCVDGNNFE 560 (560)
Q Consensus 510 ~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ip~~~-~~l~~l~l~~n~~~ 560 (560)
++|++.+.+|..+..+++|+.|++++|++ +.||..+ .+|+.|++++|++.
T Consensus 550 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 550 QGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNISVLDIKDNPNI 600 (636)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEEECCSCTTC
T ss_pred ccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEEECcCCCCc
Confidence 56889999999999999999999999999 7999864 57788889999763
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.9e-49 Score=419.84 Aligned_cols=431 Identities=19% Similarity=0.178 Sum_probs=256.4
Q ss_pred CCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEc
Q 038187 118 RNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDL 197 (560)
Q Consensus 118 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 197 (560)
++|++|++++|.+++..+..|.++++|++|++++|.+.+..|..|+++++|++|++++|.+.+..|..++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 35566666666655555555566666666666666665555555566666666666666655544444555666666666
Q ss_pred ccCCCCc-cCccccCCCCCCCEEeCCCCcccccCC-ccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCCc
Q 038187 198 SRNEIGG-SIPSTLGHLKRLRSLDLSLNELVGPIP-SSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLE 275 (560)
Q Consensus 198 ~~n~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~ 275 (560)
++|.+++ ..|..++++++|++|++++|.+.+.+| ..+.++++|++|++++|.+++..|..++.+++|++|++++|.+.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 6665554 234455556666666666555332332 35555666666666666665555555555555555555555543
Q ss_pred CCcccc-ccCCCCCCEEECcCCCCcccc--C-cccCCCCCCCEEEccCCcCcccCC----cc------------------
Q 038187 276 GPIPST-IANLVNLTSLFLCNNSQTGFI--P-STLGHLNRLTSLDLSGNNLVGPIP----SS------------------ 329 (560)
Q Consensus 276 ~~~~~~-l~~l~~L~~L~l~~n~~~~~~--~-~~l~~l~~L~~L~l~~n~~~~~~~----~~------------------ 329 (560)
.+|.. +..+++|++|++++|.+++.. + .....+++|+.|++++|.+.+..+ ..
T Consensus 186 -~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 186 -FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp -THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred -ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence 22222 234555555555555554421 1 111234445555554444433211 11
Q ss_pred ------------ccCCCCCCEEEccCCccccc-----CCcCccCCCCCCEEEeecCcCcCCCchhc-cCCCCCCEEeccC
Q 038187 330 ------------MGHLARLTTFDMHSNRINGS-----IPLEIGNFNFLQVLDLSYNKLEGPIPSTI-ASLVNLTSLFLCN 391 (560)
Q Consensus 330 ------------~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~~~~~~~~~l-~~~~~L~~L~l~~ 391 (560)
+..+++++.+++.++.+... ++..+...++|++|++++|.+. .+|..+ ..+++|++|++++
T Consensus 265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~ 343 (549)
T 2z81_A 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSE 343 (549)
T ss_dssp CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCS
T ss_pred ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccC
Confidence 22334444444444433211 0001122356777777777776 455544 4678888888888
Q ss_pred CcccccCcc---cccCCCCCCEEECcCCcccccCC--ccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcc
Q 038187 392 NSQTGFIPS---TLGHLNRLTSLDLSGNNLVGPIP--SSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKL 466 (560)
Q Consensus 392 n~l~~~~~~---~~~~~~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 466 (560)
|.+++.+|. .+..+++|+.|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++
T Consensus 344 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l 422 (549)
T 2z81_A 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI 422 (549)
T ss_dssp SCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCC
T ss_pred CccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCc
Confidence 888776542 35677888888888888774322 34677888888888888887 6777777778888888888887
Q ss_pred cccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCccccCccCCCCCCCCEEeCCCCcCccccCccC
Q 038187 467 DGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLYGSIPESL 546 (560)
Q Consensus 467 ~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ip~~~ 546 (560)
++ +|..+ .++|++|++++|++++.+ ..+++|++|++++|+++ .+|. ...+++|+.|++++|++++.+|..+
T Consensus 423 ~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~ 493 (549)
T 2z81_A 423 RV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIF 493 (549)
T ss_dssp SC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGG
T ss_pred cc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHH
Confidence 73 34333 257888888888887542 46778888888888887 5665 4567788888888888887777655
Q ss_pred CCC---CCeeeecccCC
Q 038187 547 RKV---PSLCVDGNNFE 560 (560)
Q Consensus 547 ~~l---~~l~l~~n~~~ 560 (560)
.++ +.|++++|+|+
T Consensus 494 ~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 494 DRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp GGCTTCCEEECCSSCBC
T ss_pred hcCcccCEEEecCCCcc
Confidence 544 44458888763
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-47 Score=422.01 Aligned_cols=432 Identities=18% Similarity=0.234 Sum_probs=356.1
Q ss_pred CCccEEECcCCCCCCcCccccCCCCCCCEEEC-CCCCCCCCCCcCCCCC-CCCCE-----E---------eC-cCCcCCc
Q 038187 118 RNLVHLDLSDNYIEGYILPTLGHLSKLENLNL-SSNALDGNIPSTLGHL-TRLTT-----L---------AI-ASNQINS 180 (560)
Q Consensus 118 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L-~~n~~~~~~~~~~~~l-~~L~~-----L---------~L-~~n~~~~ 180 (560)
.+++.|+|+++.+.|.+|+.++++++|++|+| ++|.++|..|...... ..+.. + +. ....+.+
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 47889999999999999999999999999999 8887776543221111 00000 0 00 0000000
Q ss_pred -----------CCcccCCCCCCCCEEEccc--CCCCccCccccCCCCCCCEEeCCCCcccc-----------------cC
Q 038187 181 -----------SIPLEIENLNFLQVLDLSR--NEIGGSIPSTLGHLKRLRSLDLSLNELVG-----------------PI 230 (560)
Q Consensus 181 -----------~~~~~l~~l~~L~~L~l~~--n~~~~~~~~~l~~l~~L~~L~L~~n~l~~-----------------~~ 230 (560)
..+........++.+.+.. |.+++ +|..++++++|++|++++|.+++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0111112333445455544 77887 89999999999999999999998 38
Q ss_pred Ccccc--CCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCC-CcC-CccccccCC-------CCCCEEECcCCCCc
Q 038187 231 PSSLG--HLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNK-LEG-PIPSTIANL-------VNLTSLFLCNNSQT 299 (560)
Q Consensus 231 ~~~l~--~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l-------~~L~~L~l~~n~~~ 299 (560)
|..++ ++++|++|++++|.+.+.+|..++++++|+.|++++|+ +++ .+|..+..+ ++|+.|++++|.++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 99888 99999999999999999999999999999999999998 888 788766554 49999999999999
Q ss_pred cccCc--ccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCccCCCC-CCEEEeecCcCcCCCch
Q 038187 300 GFIPS--TLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNF-LQVLDLSYNKLEGPIPS 376 (560)
Q Consensus 300 ~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~ 376 (560)
.+|. .++.+++|+.|++++|.+. .+| .++.+++|++|++++|.+. .+|..+..+++ |++|++++|.+. .+|.
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~ 636 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN 636 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence 7888 8999999999999999998 888 7999999999999999999 88988999999 999999999998 7788
Q ss_pred hccCCCC--CCEEeccCCcccccCcccc---c--CCCCCCEEECcCCcccccCCccc-cCCCCCCEEEccCCcCcccCCc
Q 038187 377 TIASLVN--LTSLFLCNNSQTGFIPSTL---G--HLNRLTSLDLSGNNLVGPIPSSV-GHLTQLTTFDMHSNRINGSIPL 448 (560)
Q Consensus 377 ~l~~~~~--L~~L~l~~n~l~~~~~~~~---~--~~~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~l~~n~l~~~~~~ 448 (560)
.+...+. |+.|++++|.+.+.+|... . ..++|+.|++++|+++ .+|..+ ..+++|+.|++++|+++ .+|.
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~ 714 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPE 714 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCT
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccCh
Confidence 7776654 9999999999998765332 2 3458999999999999 666655 48999999999999999 6666
Q ss_pred cccC--------CCCCCeeecccCcccccCchhhh--cCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcC------C
Q 038187 449 EIGN--------LKHVEDVYLFNNKLDGPIPPQLL--NCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQ------N 512 (560)
Q Consensus 449 ~~~~--------l~~L~~L~l~~n~l~~~~~~~l~--~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~------n 512 (560)
.+.. +++|++|++++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N 792 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGN 792 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCC
T ss_pred HHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccc
Confidence 5433 349999999999999 7888887 89999999999999997 899999999999999976 8
Q ss_pred cCccccCccCCCCCCCCEEeCCCCcCccccCccC-CCCCCeeeecccCC
Q 038187 513 FINGKIPSQLGEIPSIDTVNLCTNNLYGSIPESL-RKVPSLCVDGNNFE 560 (560)
Q Consensus 513 ~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ip~~~-~~l~~l~l~~n~~~ 560 (560)
++.+.+|..+..+++|+.|++++|++ +.||..+ .+|+.|+|++|++.
T Consensus 793 ~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 793 RILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPNI 840 (876)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCTTC
T ss_pred cccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCCCC
Confidence 89999999999999999999999999 7999964 47788889999873
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-47 Score=405.03 Aligned_cols=428 Identities=20% Similarity=0.252 Sum_probs=325.3
Q ss_pred CCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEc
Q 038187 118 RNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDL 197 (560)
Q Consensus 118 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 197 (560)
++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|+++++|++|++++|.++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 79999999999999988889999999999999999999888999999999999999999998 56665 8999999999
Q ss_pred ccCCCCc-cCccccCCCCCCCEEeCCCCcccccCCccccCCCCC--CEEEeecCcC--CccCcccccCCC-CCCEEECcC
Q 038187 198 SRNEIGG-SIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTEL--TFFNIYSNRI--NGSIPLEIGNFN-FLQVLDLSY 271 (560)
Q Consensus 198 ~~n~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~~n~~--~~~~~~~l~~l~-~L~~L~L~~ 271 (560)
++|.+++ .+|..++++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|..+..+. ....+++++
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 9999987 478899999999999999999886 356777788 9999999999 777777776655 233467777
Q ss_pred CCCcCCccc-cccCCCCCCEEECcCCC-------CccccCcccCCCCCCCEEEccCCcCcccCCccc---cCCCCCCEEE
Q 038187 272 NKLEGPIPS-TIANLVNLTSLFLCNNS-------QTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSM---GHLARLTTFD 340 (560)
Q Consensus 272 n~l~~~~~~-~l~~l~~L~~L~l~~n~-------~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~L~ 340 (560)
|.+.+.++. .+..+++|+.+++++|. +.+.++ .++.+++|+.|++++|.+.+..+..+ ...++|++|+
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred Ccchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence 777765554 45678888888888886 555555 57778888888888877765322211 1245788888
Q ss_pred ccCCcccccCCcCc-----cCCCCCCEEEeecCcCcCCCc-hhccCC---CCCCEEeccCCcccccCcccccCCCCCCEE
Q 038187 341 MHSNRINGSIPLEI-----GNFNFLQVLDLSYNKLEGPIP-STIASL---VNLTSLFLCNNSQTGFIPSTLGHLNRLTSL 411 (560)
Q Consensus 341 l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~-~~l~~~---~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 411 (560)
+++|.+.+.+|..+ ..+++|+.+++++|.+ .+| ..+..+ ++|+.|++++|.+.+.. ....+++|++|
T Consensus 254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L 329 (520)
T 2z7x_B 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHL 329 (520)
T ss_dssp EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEE
T ss_pred eecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEE
Confidence 88888888888777 7788888888888877 444 333333 56777777777765432 12566777788
Q ss_pred ECcCCcccccCCccccCCCCCCEEEccCCcCcc--cCCccccCCCCCCeeecccCcccccCchh-hhcCCCCCeeeCccC
Q 038187 412 DLSGNNLVGPIPSSVGHLTQLTTFDMHSNRING--SIPLEIGNLKHVEDVYLFNNKLDGPIPPQ-LLNCSRLRALSLSNN 488 (560)
Q Consensus 412 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~~~~L~~L~Ls~n 488 (560)
++++|++++.+|..+..+++|++|++++|++++ .+|..+..+++|++|++++|++.+.+|.. +..+++|++|++++|
T Consensus 330 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N 409 (520)
T 2z7x_B 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409 (520)
T ss_dssp ECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSS
T ss_pred EeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCC
Confidence 888777777777777777778888888777775 45566777777788888887777645543 666777778888877
Q ss_pred cccccChhhhhcCcCCCeeeCcCCcCccccCccCCCCCCCCEEeCCCCcCccccCcc-CCC---CCCeeeecccCC
Q 038187 489 LLSGSIPSEIGKLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLYGSIPES-LRK---VPSLCVDGNNFE 560 (560)
Q Consensus 489 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ip~~-~~~---l~~l~l~~n~~~ 560 (560)
++++.+|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +.+ |+.|++++|+++
T Consensus 410 ~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 410 ILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCc
Confidence 77776666554 67777888887777 67776667777788888887777 56654 444 344447777763
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.9e-47 Score=400.56 Aligned_cols=436 Identities=21% Similarity=0.206 Sum_probs=369.9
Q ss_pred CCCeEEEeccccCCCCceeecCCCCccccccccccCCCCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCC
Q 038187 80 AGSVTGVSLLLYENDNIKGELGRFNFSCFPNLKKMGRLRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIP 159 (560)
Q Consensus 80 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~ 159 (560)
..+++.++++ ++.+.+..+. .+..+++|++|++++|.+++..|..|+++++|++|++++|.++ .+|
T Consensus 20 ~~~L~~L~Ls---~n~i~~~~~~----------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 85 (520)
T 2z7x_B 20 SQKTTILNIS---QNYISELWTS----------DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KIS 85 (520)
T ss_dssp CTTCSEEECC---SSCCCCCCHH----------HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEE
T ss_pred cccccEEECC---CCcccccChh----------hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecC
Confidence 4678899988 6666554332 2788999999999999999988999999999999999999998 566
Q ss_pred cCCCCCCCCCEEeCcCCcCCc-CCcccCCCCCCCCEEEcccCCCCccCccccCCCCCC--CEEeCCCCcc--cccCCccc
Q 038187 160 STLGHLTRLTTLAIASNQINS-SIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRL--RSLDLSLNEL--VGPIPSSL 234 (560)
Q Consensus 160 ~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~l 234 (560)
.. .+++|++|++++|.+.+ .+|..++++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|..+
T Consensus 86 ~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l 160 (520)
T 2z7x_B 86 CH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGL 160 (520)
T ss_dssp CC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTT
T ss_pred cc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccc
Confidence 65 89999999999999987 578899999999999999999986 356677777 9999999999 77888888
Q ss_pred cCCC-CCCEEEeecCcCCccCcc-cccCCCCCCEEECcCCC-------CcCCccccccCCCCCCEEECcCCCCccccCcc
Q 038187 235 GHLT-ELTFFNIYSNRINGSIPL-EIGNFNFLQVLDLSYNK-------LEGPIPSTIANLVNLTSLFLCNNSQTGFIPST 305 (560)
Q Consensus 235 ~~l~-~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~L~~n~-------l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 305 (560)
..++ +...+++++|.+.+.++. .+..+++|+.+++++|. +.+.++ .+..+++|+.|++++|.+.+..+..
T Consensus 161 ~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~ 239 (520)
T 2z7x_B 161 QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIR 239 (520)
T ss_dssp TTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHH
T ss_pred cccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHH
Confidence 7766 344567788887766655 46789999999999987 665555 6888999999999999877543222
Q ss_pred cC---CCCCCCEEEccCCcCcccCCccc-----cCCCCCCEEEccCCcccccCC-cCccCC---CCCCEEEeecCcCcCC
Q 038187 306 LG---HLNRLTSLDLSGNNLVGPIPSSM-----GHLARLTTFDMHSNRINGSIP-LEIGNF---NFLQVLDLSYNKLEGP 373 (560)
Q Consensus 306 l~---~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~-~~~~~l---~~L~~L~l~~n~~~~~ 373 (560)
+. ..++|++|++++|.+.+.+|..+ +.+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.+.
T Consensus 240 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~ 317 (520)
T 2z7x_B 240 ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHM 317 (520)
T ss_dssp HHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred HHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccc
Confidence 11 24699999999999998999988 8999999999999998 455 334333 6799999999998754
Q ss_pred CchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccc--cCCccccCCCCCCEEEccCCcCcccCCcc-c
Q 038187 374 IPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVG--PIPSSVGHLTQLTTFDMHSNRINGSIPLE-I 450 (560)
Q Consensus 374 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~~~~-~ 450 (560)
. ....+++|++|++++|.+++.+|..+..+++|++|++++|++++ .+|..+..+++|++|++++|++++.+|.. +
T Consensus 318 ~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~ 395 (520)
T 2z7x_B 318 L--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395 (520)
T ss_dssp C--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC
T ss_pred c--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchh
Confidence 2 12678999999999999999899999999999999999999986 56678999999999999999999867654 7
Q ss_pred cCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCccccCcc-CCCCCCCC
Q 038187 451 GNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFINGKIPSQ-LGEIPSID 529 (560)
Q Consensus 451 ~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~ 529 (560)
..+++|++|++++|++++.+|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+
T Consensus 396 ~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 396 SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQ 471 (520)
T ss_dssp CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred ccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCccc
Confidence 8899999999999999988776664 79999999999999 78988889999999999999999 57765 99999999
Q ss_pred EEeCCCCcCccccC
Q 038187 530 TVNLCTNNLYGSIP 543 (560)
Q Consensus 530 ~L~ls~n~l~~~ip 543 (560)
.|++++|++++..+
T Consensus 472 ~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 472 KIWLHTNPWDCSCP 485 (520)
T ss_dssp EEECCSSCBCCCHH
T ss_pred EEECcCCCCcccCC
Confidence 99999999997654
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.8e-45 Score=392.84 Aligned_cols=409 Identities=20% Similarity=0.230 Sum_probs=322.2
Q ss_pred CCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEcccCCCCccCccccCCCCCCCEEeC
Q 038187 142 SKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDL 221 (560)
Q Consensus 142 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L 221 (560)
++|++|++++|.+++..|..|.++++|++|++++|.+.+..|..|.++++|++|++++|.+++..+..++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 78999999999999888999999999999999999999888889999999999999999999888888999999999999
Q ss_pred CCCcccc-cCCccccCCCCCCEEEeecCcCCccCc-ccccCCCCCCEEECcCCCCcCCccccccCCCCCCEEECcCCCCc
Q 038187 222 SLNELVG-PIPSSLGHLTELTFFNIYSNRINGSIP-LEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQT 299 (560)
Q Consensus 222 ~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 299 (560)
++|.+++ ..|..++++++|++|++++|.+.+.++ ..+..+++|++|++++|.+.+..|..+..+++|++|+++.|.+.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 9999986 457789999999999999998555554 57999999999999999999999999999999999999999876
Q ss_pred cccCcccCCCCCCCEEEccCCcCcccC--C-ccccCCCCCCEEEccCCcccccCC----cCccCCCCCCEEEeecCcCcC
Q 038187 300 GFIPSTLGHLNRLTSLDLSGNNLVGPI--P-SSMGHLARLTTFDMHSNRINGSIP----LEIGNFNFLQVLDLSYNKLEG 372 (560)
Q Consensus 300 ~~~~~~l~~l~~L~~L~l~~n~~~~~~--~-~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~~~~ 372 (560)
......+..+++|++|++++|.+.+.. + .....+++|++|++++|.+++..+ ..+..+++|+.+++++|.+.+
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence 443333457899999999999998642 1 123467889999999988775433 223455667777777666543
Q ss_pred CC-----------------------------------chhccCCCCCCEEeccCCcccccCcccc-cCCCCCCEEECcCC
Q 038187 373 PI-----------------------------------PSTIASLVNLTSLFLCNNSQTGFIPSTL-GHLNRLTSLDLSGN 416 (560)
Q Consensus 373 ~~-----------------------------------~~~l~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~L~~n 416 (560)
.. +..+...++|++|++++|.+. .+|..+ ..+++|++|++++|
T Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSS
T ss_pred cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCC
Confidence 21 111122356777777777765 455554 46788888888888
Q ss_pred cccccCC---ccccCCCCCCEEEccCCcCcccCC--ccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCccc
Q 038187 417 NLVGPIP---SSVGHLTQLTTFDMHSNRINGSIP--LEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLS 491 (560)
Q Consensus 417 ~l~~~~p---~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~ 491 (560)
++++.+| ..++.+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS
T ss_pred ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc
Confidence 8876553 336677888888888888874322 34677888888888888887 56777777888888888888887
Q ss_pred ccChhhhhcCcCCCeeeCcCCcCccccCccCCCCCCCCEEeCCCCcCccccCcc--CCCCCCeeeecccCC
Q 038187 492 GSIPSEIGKLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLYGSIPES--LRKVPSLCVDGNNFE 560 (560)
Q Consensus 492 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ip~~--~~~l~~l~l~~n~~~ 560 (560)
.+|..+. ++|++|++++|++++.+ ..+++|+.|++++|+++ .||.. +.+|+.|++++|+++
T Consensus 424 -~l~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~l~ 486 (549)
T 2z81_A 424 -VVKTCIP--QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLK 486 (549)
T ss_dssp -CCCTTSC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSCCC
T ss_pred -cccchhc--CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCCcccCccCCEEecCCCccC
Confidence 3444432 57888888888887643 46889999999999998 78864 556777779999874
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=9.8e-43 Score=378.30 Aligned_cols=439 Identities=21% Similarity=0.220 Sum_probs=321.3
Q ss_pred CCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEc
Q 038187 118 RNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDL 197 (560)
Q Consensus 118 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 197 (560)
+++++|||++|.+++..+..|.++++|++|+|++|.+++..+.+|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 37889999999998877788999999999999999988777778899999999999999988766677888999999999
Q ss_pred ccCCCCccCccccCCCCCCCEEeCCCCcccc-cCCccccCCCCCCEEEeecCcCCccCcccccCCCCC----CEEECcCC
Q 038187 198 SRNEIGGSIPSTLGHLKRLRSLDLSLNELVG-PIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFL----QVLDLSYN 272 (560)
Q Consensus 198 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L----~~L~L~~n 272 (560)
++|.+++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|++++..+..+..+.++ ..++++.|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 9999887766778889999999999998865 457788889999999999998887777666544332 35666666
Q ss_pred CCcCCccccccCCCCCCEEECcCCCCcc----------------------------------------------------
Q 038187 273 KLEGPIPSTIANLVNLTSLFLCNNSQTG---------------------------------------------------- 300 (560)
Q Consensus 273 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~---------------------------------------------------- 300 (560)
.+....+..+ ....++.+++.+|....
T Consensus 212 ~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 212 PMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred cccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 6553222211 11122222222221100
Q ss_pred ------ccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccC-------------------CcCcc
Q 038187 301 ------FIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSI-------------------PLEIG 355 (560)
Q Consensus 301 ------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------------~~~~~ 355 (560)
.....+....+++.+.+.++.+.... .+.....++.|++.+|.+.+.. +....
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~ 368 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 368 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCC
T ss_pred hcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccc
Confidence 00011112223333443333332111 1223334444444444333211 11233
Q ss_pred CCCCCCEEEeecCcCc--CCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCC-ccccCCCCC
Q 038187 356 NFNFLQVLDLSYNKLE--GPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIP-SSVGHLTQL 432 (560)
Q Consensus 356 ~l~~L~~L~l~~n~~~--~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L 432 (560)
.+++|+.+++++|.+. +..+..+..+.+|+.+++..+..... +..+..+++|+.+++..+......+ ..+..++++
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhhcccccccccccccccccc
Confidence 5677888888877764 33455566777888888887776643 4456778899999999887665443 456788999
Q ss_pred CEEEccCCcCcccCCccccCCCCCCeeecccCccc-ccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcC
Q 038187 433 TTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLD-GPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQ 511 (560)
Q Consensus 433 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 511 (560)
+.+++++|.+.+..+..+..++.++.|++++|.+. +..|..+..+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence 99999999999888888999999999999999854 45677889999999999999999999999999999999999999
Q ss_pred CcCccccCccCCCCCCCCEEeCCCCcCccccCccCCC----CCCeeeecccCC
Q 038187 512 NFINGKIPSQLGEIPSIDTVNLCTNNLYGSIPESLRK----VPSLCVDGNNFE 560 (560)
Q Consensus 512 n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ip~~~~~----l~~l~l~~n~~~ 560 (560)
|++++..|..|..+++|++||+++|++++.+|..+.+ |+.|++++|+|+
T Consensus 528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 9999888899999999999999999999999988764 455669999874
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.3e-43 Score=379.15 Aligned_cols=425 Identities=20% Similarity=0.214 Sum_probs=268.8
Q ss_pred CCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEc
Q 038187 118 RNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDL 197 (560)
Q Consensus 118 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 197 (560)
+++++|++++|.+++..+..|.++++|++|++++|.+++..|+.|.++++|++|++++|.++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 79999999999999988899999999999999999999888999999999999999999998 56665 8999999999
Q ss_pred ccCCCCc-cCccccCCCCCCCEEeCCCCcccccCCccccCCCCC--CEEEeecCcC--CccCcccccCCC--CCCEEECc
Q 038187 198 SRNEIGG-SIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTEL--TFFNIYSNRI--NGSIPLEIGNFN--FLQVLDLS 270 (560)
Q Consensus 198 ~~n~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~~n~~--~~~~~~~l~~l~--~L~~L~L~ 270 (560)
++|.+++ ..|..++++++|++|++++|++++. .+..+++| ++|++++|.+ ++..|..+..+. .+ .++++
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~ 204 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFH 204 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEEC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceE-EEEec
Confidence 9999987 3468899999999999999998864 34455555 9999999999 777787776654 22 45677
Q ss_pred CCCCcCCccc-cccCCCCCCEEECcCCCC-----ccccCcccCCCCCCCEEEccCCcCccc----CCccccCCCCCCEEE
Q 038187 271 YNKLEGPIPS-TIANLVNLTSLFLCNNSQ-----TGFIPSTLGHLNRLTSLDLSGNNLVGP----IPSSMGHLARLTTFD 340 (560)
Q Consensus 271 ~n~l~~~~~~-~l~~l~~L~~L~l~~n~~-----~~~~~~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~ 340 (560)
+|.+.+.++. .+..+++|+.+++++|.. .+. ...+..+++|+.+++.++.+.+. ++.. ...++|++|+
T Consensus 205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~ 282 (562)
T 3a79_B 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLN 282 (562)
T ss_dssp SSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEE
T ss_pred CccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEE
Confidence 7777665544 345677788888887741 111 12345566666666666554432 1111 1234666777
Q ss_pred ccCCcccccCCcCc-----cCCCCCCEEEeecCcCcCCCc-hhcc---CCCCCCEEeccCCcccccCcccccCCCCCCEE
Q 038187 341 MHSNRINGSIPLEI-----GNFNFLQVLDLSYNKLEGPIP-STIA---SLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSL 411 (560)
Q Consensus 341 l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~-~~l~---~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 411 (560)
+++|.+.+.+|..+ ..++.|+.+++..+.+ .+| ..+. ...+|++|++++|.+.... ....+++|++|
T Consensus 283 l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 358 (562)
T 3a79_B 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFL 358 (562)
T ss_dssp EEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEE
T ss_pred EeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEE
Confidence 77776666666554 4444444444444444 222 1111 1234555555555544221 11345555555
Q ss_pred ECcCCcccccCCccccCCCCCCEEEccCCcCcc--cCCccccCCCCCCeeecccCcccccCch-hhhcCCCCCeeeCccC
Q 038187 412 DLSGNNLVGPIPSSVGHLTQLTTFDMHSNRING--SIPLEIGNLKHVEDVYLFNNKLDGPIPP-QLLNCSRLRALSLSNN 488 (560)
Q Consensus 412 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~~~~L~~L~Ls~n 488 (560)
++++|++++.+|..+..+++|++|++++|++++ .+|..+..+++|++|++++|++++.+|. .+..+++|++|++++|
T Consensus 359 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n 438 (562)
T 3a79_B 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438 (562)
T ss_dssp ECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS
T ss_pred ECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCC
Confidence 555555555555555555555555555555553 2233455555555555555555543332 2445555555555555
Q ss_pred cccccChhhhhcCcCCCeeeCcCCcCccccCccCCCCCCCCEEeCCCCcCccccCcc-CCCC---CCeeeecccC
Q 038187 489 LLSGSIPSEIGKLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLYGSIPES-LRKV---PSLCVDGNNF 559 (560)
Q Consensus 489 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ip~~-~~~l---~~l~l~~n~~ 559 (560)
++++.+|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +.++ +.|++++|+|
T Consensus 439 ~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 439 MLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp CCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCB
T ss_pred CCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCc
Confidence 55554444332 45555555555555 45554445555555555555555 34443 3322 3333555554
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.1e-42 Score=360.42 Aligned_cols=389 Identities=21% Similarity=0.183 Sum_probs=249.8
Q ss_pred cEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCC-cccCCCCCCCCEEEccc
Q 038187 121 VHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSI-PLEIENLNFLQVLDLSR 199 (560)
Q Consensus 121 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l~~ 199 (560)
+.++.+++.++.. |. + .++|++|++++|.+.+..|..|+++++|++|++++|.+.+.+ +..|.++++|++|++++
T Consensus 13 ~~~~c~~~~l~~l-p~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLHQV-PE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCSSC-CC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcccC-CC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 4677777766543 33 2 267788888888877777777777888888888877776444 45577777777777777
Q ss_pred CCCCccCccccCCCCCCCEEeCCCCcccccCCcc--ccCCCCCCEEEeecCcCCccCccc-ccCCCCCCEEECcCCCCcC
Q 038187 200 NEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSS--LGHLTELTFFNIYSNRINGSIPLE-IGNFNFLQVLDLSYNKLEG 276 (560)
Q Consensus 200 n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~L~~n~l~~ 276 (560)
|.+++..|..++++++|++|++++|.+++..+.. +..+++|++|++++|.+++..|.. +..+++|++|++++|.+.+
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 7777666777777777777777777776544333 666677777777777666655554 5666666666666666665
Q ss_pred CccccccCC--CCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCc
Q 038187 277 PIPSTIANL--VNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEI 354 (560)
Q Consensus 277 ~~~~~l~~l--~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 354 (560)
..+..+..+ .+|+.+++++|.+.+..+..+.. .....+..+++|++|++++|.+++..|..+
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~----------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 232 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW----------------EKCGNPFKNTSITTLDLSGNGFKESMAKRF 232 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH----------------HHHCCTTTTCEEEEEECTTSCCCHHHHHHH
T ss_pred cChhhhhccccccccccccccCcccccchhhccc----------------cccccccccceeeeEecCCCcccccchhhh
Confidence 555554433 44555555555544332221110 000012233455555555555554444333
Q ss_pred cC---CCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCccccc--CCCCCCEEECcCCcccccCCccccCC
Q 038187 355 GN---FNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLG--HLNRLTSLDLSGNNLVGPIPSSVGHL 429 (560)
Q Consensus 355 ~~---l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~L~~n~l~~~~p~~~~~l 429 (560)
.. .++|+.|++++|...+... ..+.+.+..+..+. ..++|+.|++++|++++..|..+..+
T Consensus 233 ~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 298 (455)
T 3v47_A 233 FDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF 298 (455)
T ss_dssp HHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC
T ss_pred hccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccC
Confidence 22 2455556665554433211 01111111111111 23567777777777777777777777
Q ss_pred CCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeC
Q 038187 430 TQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDL 509 (560)
Q Consensus 430 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 509 (560)
++|++|++++|++.+..+..+..+++|++|++++|++.+..|..+..+++|++|++++|++++..|..+..+++|++|++
T Consensus 299 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 378 (455)
T 3v47_A 299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL 378 (455)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEEC
Confidence 77888888777777777777777778888888888887777777777888888888888888777777888888888888
Q ss_pred cCCcCccccCccCCCCCCCCEEeCCCCcCccccC
Q 038187 510 SQNFINGKIPSQLGEIPSIDTVNLCTNNLYGSIP 543 (560)
Q Consensus 510 ~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ip 543 (560)
++|++++..+..+..+++|+.|++++|++++.+|
T Consensus 379 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 379 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 8888876555667778888888888888887777
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.2e-42 Score=359.05 Aligned_cols=364 Identities=21% Similarity=0.193 Sum_probs=263.5
Q ss_pred CCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCC-CcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEE
Q 038187 118 RNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNI-PSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLD 196 (560)
Q Consensus 118 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 196 (560)
++|++|++++|.+++..+..|+++++|++|++++|.+.+.+ +..|.++++|++|++++|.+.+..|..+.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 58999999999999988999999999999999999997655 56799999999999999999988899999999999999
Q ss_pred cccCCCCccCccc--cCCCCCCCEEeCCCCcccccCCcc-ccCCCCCCEEEeecCcCCccCcccccCC--CCCCEEECcC
Q 038187 197 LSRNEIGGSIPST--LGHLKRLRSLDLSLNELVGPIPSS-LGHLTELTFFNIYSNRINGSIPLEIGNF--NFLQVLDLSY 271 (560)
Q Consensus 197 l~~n~~~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~l~~l--~~L~~L~L~~ 271 (560)
+++|.+++..+.. +..+++|++|++++|.+++..|.. +.++++|++|++++|.+.+..+..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999999765554 899999999999999999887776 8999999999999999998888888766 7899999999
Q ss_pred CCCcCCccccc--------cCCCCCCEEECcCCCCccccCcccCC---CCCCCEEEccCCcCcccCCccccCCCCCCEEE
Q 038187 272 NKLEGPIPSTI--------ANLVNLTSLFLCNNSQTGFIPSTLGH---LNRLTSLDLSGNNLVGPIPSSMGHLARLTTFD 340 (560)
Q Consensus 272 n~l~~~~~~~l--------~~l~~L~~L~l~~n~~~~~~~~~l~~---l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 340 (560)
|.+.+..+..+ ..+++|++|++++|.+++..|..+.. .++|+.|++++|...+....
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------ 257 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG------------ 257 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT------------
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc------------
Confidence 99886544332 24567777777777777666555433 26677777776665432110
Q ss_pred ccCCcccccCCcCcc--CCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcc
Q 038187 341 MHSNRINGSIPLEIG--NFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNL 418 (560)
Q Consensus 341 l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 418 (560)
.+.+.+..+..+. ..++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 258 --~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 335 (455)
T 3v47_A 258 --HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335 (455)
T ss_dssp --CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred --hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc
Confidence 1111111111111 224566666666666666666666666666666666666665555666666666666666666
Q ss_pred cccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccCh
Q 038187 419 VGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIP 495 (560)
Q Consensus 419 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p 495 (560)
++..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus 336 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 65555566666666666666666665556666666666666666666665444455566666666666666665554
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=6.1e-42 Score=354.53 Aligned_cols=383 Identities=23% Similarity=0.309 Sum_probs=199.1
Q ss_pred CCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCC-------------CEEeCcCCcCCcCCc
Q 038187 117 LRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRL-------------TTLAIASNQINSSIP 183 (560)
Q Consensus 117 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L-------------~~L~L~~n~~~~~~~ 183 (560)
.++|++|++++|.+ +.+|+.++++++|++|++++|.+.|.+|..++++++| ++|++++|.+++ +|
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence 35666666666666 5666666666667777666666666666666666543 666776666653 33
Q ss_pred ccCCCCCCCCEEEcccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCC
Q 038187 184 LEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNF 263 (560)
Q Consensus 184 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 263 (560)
.. .++|++|++++|.+++ +|.. .++|++|++++|++++ ++.. .++|++|++++|++++ +| .++.+++
T Consensus 88 ~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~ 154 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSF 154 (454)
T ss_dssp SC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTT
T ss_pred CC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCC
Confidence 31 2566677777666664 4432 3566677776666653 2221 1566677777666664 45 4666667
Q ss_pred CCEEECcCCCCcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccC
Q 038187 264 LQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHS 343 (560)
Q Consensus 264 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 343 (560)
|++|++++|++++ +|..+ ++|++|++++|.+++ +| .++.+++|++|++++|.+.+ +|.. .++|++|++++
T Consensus 155 L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~ 224 (454)
T 1jl5_A 155 LKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGN 224 (454)
T ss_dssp CCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCS
T ss_pred CCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcC
Confidence 7777777666664 44322 366677777766665 34 46666677777777766654 3332 24666777777
Q ss_pred CcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCC
Q 038187 344 NRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIP 423 (560)
Q Consensus 344 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 423 (560)
|.+. .+| .+..+++|++|++++|.+.+ +|. ..++|++|++++|.+++ +|.. .++|+.|++++|++++ +|
T Consensus 225 n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~ 293 (454)
T 1jl5_A 225 NILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LS 293 (454)
T ss_dssp SCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ES
T ss_pred CcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-cc
Confidence 6666 455 36666667777777766664 332 23566677777666665 3332 2566677777766664 12
Q ss_pred ccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcC
Q 038187 424 SSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKE 503 (560)
Q Consensus 424 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~ 503 (560)
.. .++|++|++++|++++ ++. ..++|++|++++|++++ +|.. +++|++|++++|+++ .+|. .+++
T Consensus 294 ~~---~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~ 358 (454)
T 1jl5_A 294 EL---PPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQN 358 (454)
T ss_dssp CC---CTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTT
T ss_pred Cc---CCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhh
Confidence 11 1466677777776663 221 11366677777776664 4432 456677777777666 3554 3566
Q ss_pred CCeeeCcCCcCcc--ccCccCCCC-------------CCCCEEeCCCCcCcc--ccCccCCCCC
Q 038187 504 LYYLDLSQNFING--KIPSQLGEI-------------PSIDTVNLCTNNLYG--SIPESLRKVP 550 (560)
Q Consensus 504 L~~L~L~~n~l~~--~~p~~l~~l-------------~~L~~L~ls~n~l~~--~ip~~~~~l~ 550 (560)
|++|++++|++++ .+|..+..+ ++|+.|++++|+++| .||.++.++.
T Consensus 359 L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L~ 422 (454)
T 1jl5_A 359 LKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLR 422 (454)
T ss_dssp CCEEECCSSCCSSCCCCCTTCCEEECCC------------------------------------
T ss_pred ccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhhee
Confidence 7777777777666 566666655 788888898888887 7887766553
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6e-41 Score=364.27 Aligned_cols=439 Identities=22% Similarity=0.193 Sum_probs=341.7
Q ss_pred CCeEEEeccccCCCCceeecCCCCccccccccccCCCCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCc
Q 038187 81 GSVTGVSLLLYENDNIKGELGRFNFSCFPNLKKMGRLRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPS 160 (560)
Q Consensus 81 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~ 160 (560)
..++.++++ .+.+.+-.+. . |.++++|++|+|++|.+++..+.+|+++++|++|+|++|.+++..+.
T Consensus 52 ~~~~~LdLs---~N~i~~l~~~-~---------f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~ 118 (635)
T 4g8a_A 52 FSTKNLDLS---FNPLRHLGSY-S---------FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 118 (635)
T ss_dssp TTCCEEECT---TSCCCEECTT-T---------TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG
T ss_pred cCCCEEEee---CCCCCCCCHH-H---------HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH
Confidence 368889988 6666654332 4 88999999999999999998888999999999999999999987778
Q ss_pred CCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEcccCCCCc-cCccccCCCCCCCEEeCCCCcccccCCccccCCCC
Q 038187 161 TLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGG-SIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTE 239 (560)
Q Consensus 161 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 239 (560)
.|.++++|++|++++|++++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|++++..+..+..+++
T Consensus 119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~ 198 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 198 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhh
Confidence 89999999999999999997777789999999999999999976 46788899999999999999999887777655443
Q ss_pred C----CEEEeecCcCCccCcccc------------------------cCCCCCCEEEC----------------------
Q 038187 240 L----TFFNIYSNRINGSIPLEI------------------------GNFNFLQVLDL---------------------- 269 (560)
Q Consensus 240 L----~~L~l~~n~~~~~~~~~l------------------------~~l~~L~~L~L---------------------- 269 (560)
+ ..++++.|.+....+..+ ..+..++...+
T Consensus 199 l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~ 278 (635)
T 4g8a_A 199 MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 278 (635)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGG
T ss_pred hhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccc
Confidence 3 355666665543222211 12222222221
Q ss_pred -----------------------------------cCCCCcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCE
Q 038187 270 -----------------------------------SYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTS 314 (560)
Q Consensus 270 -----------------------------------~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 314 (560)
.++.+... ..+.....++.|++.+|.+.+..+ ..++.|+.
T Consensus 279 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~ 353 (635)
T 4g8a_A 279 CNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKR 353 (635)
T ss_dssp GGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC---CBCTTCCE
T ss_pred cchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCc---ccchhhhh
Confidence 11111000 011222344444444444433221 12345555
Q ss_pred EEccCCcCcccCCccccCCCCCCEEEccCCcccc--cCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCC
Q 038187 315 LDLSGNNLVGPIPSSMGHLARLTTFDMHSNRING--SIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNN 392 (560)
Q Consensus 315 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 392 (560)
+++..|..... .....+++|+.++++.|.+.. ..+..+..+.+|+++++..+.... .+..+..+++|+.+++..+
T Consensus 354 l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~ 430 (635)
T 4g8a_A 354 LTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHS 430 (635)
T ss_dssp EEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTS
T ss_pred cccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhc
Confidence 55555554422 224568999999999998853 345566678899999999998764 3456778999999999998
Q ss_pred cccccCc-ccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCc-ccCCccccCCCCCCeeecccCcccccC
Q 038187 393 SQTGFIP-STLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRIN-GSIPLEIGNLKHVEDVYLFNNKLDGPI 470 (560)
Q Consensus 393 ~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~ 470 (560)
+.....+ ..+..+++++.++++.|.+.+..+..+..+++|++|++++|.+. +..|..+..+++|++|++++|++++..
T Consensus 431 ~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~ 510 (635)
T 4g8a_A 431 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 510 (635)
T ss_dssp EEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred cccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcC
Confidence 8776544 45778999999999999999888989999999999999999754 457888999999999999999999999
Q ss_pred chhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCccccCccCCCC-CCCCEEeCCCCcCcc
Q 038187 471 PPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFINGKIPSQLGEI-PSIDTVNLCTNNLYG 540 (560)
Q Consensus 471 ~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~ls~n~l~~ 540 (560)
|..+.++++|++|+|++|++++..|..+..+++|++|+|++|++++..|..+..+ ++|+.|++++|+++-
T Consensus 511 ~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 511 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred hHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 9999999999999999999999889999999999999999999999999999998 689999999999973
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.3e-42 Score=369.38 Aligned_cols=443 Identities=20% Similarity=0.189 Sum_probs=355.7
Q ss_pred ccceecCCCCCeEEEeccccCCCCceeecCCCCccccccccccCCCCCccEEECcCCCCCCcCccccCCCCCCCEEECCC
Q 038187 72 WTGISCNSAGSVTGVSLLLYENDNIKGELGRFNFSCFPNLKKMGRLRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSS 151 (560)
Q Consensus 72 w~gv~C~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 151 (560)
+.++-.+-..+++.++++ ++.+.+..+. . +..+++|++|++++|.+++..++.|+++++|++|++++
T Consensus 43 L~~ip~~~~~~L~~L~Ls---~N~i~~~~~~-~---------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 43 LTHVPKDLPPRTKALSLS---QNSISELRMP-D---------ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CCSCCTTSCTTCCEEECC---SSCCCCCCGG-G---------TTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CccCCCCCCCCcCEEECC---CCCccccChh-h---------hccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 333333333578888888 6666554332 2 88999999999999999998899999999999999999
Q ss_pred CCCCCCCCcCCCCCCCCCEEeCcCCcCCc-CCcccCCCCCCCCEEEcccCCCCccCccccCCCCCC--CEEeCCCCcc--
Q 038187 152 NALDGNIPSTLGHLTRLTTLAIASNQINS-SIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRL--RSLDLSLNEL-- 226 (560)
Q Consensus 152 n~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~L~~n~l-- 226 (560)
|.++ .+|.. .+++|++|++++|.+.+ .+|..++++++|++|++++|.+++. .+..+++| ++|++++|.+
T Consensus 110 N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp SCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCC
T ss_pred CcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccc
Confidence 9998 56766 89999999999999986 4568899999999999999999864 34445555 9999999999
Q ss_pred cccCCccccCCC--CCCEEEeecCcCCccCcc-cccCCCCCCEEECcCCCCc----CCccccccCCCCCCEEECcCCCCc
Q 038187 227 VGPIPSSLGHLT--ELTFFNIYSNRINGSIPL-EIGNFNFLQVLDLSYNKLE----GPIPSTIANLVNLTSLFLCNNSQT 299 (560)
Q Consensus 227 ~~~~~~~l~~l~--~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~l~~n~~~ 299 (560)
++..|..+..+. .+ .+++++|.+.+.++. .+..+++|+.+++++|... ......+..++.|+.+++.++.+.
T Consensus 184 ~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~ 262 (562)
T 3a79_B 184 KGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262 (562)
T ss_dssp CSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEEC
T ss_pred cccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCc
Confidence 888888887765 33 567788888776554 4567899999999998521 112234677889999999887765
Q ss_pred ccc----CcccCCCCCCCEEEccCCcCcccCCccc-----cCCCCCCEEEccCCcccccCCc-Ccc---CCCCCCEEEee
Q 038187 300 GFI----PSTLGHLNRLTSLDLSGNNLVGPIPSSM-----GHLARLTTFDMHSNRINGSIPL-EIG---NFNFLQVLDLS 366 (560)
Q Consensus 300 ~~~----~~~l~~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~~-~~~---~l~~L~~L~l~ 366 (560)
+.. +..+ ..++|++|++++|.+.+.+|..+ ..++.|+.+++..+.+ .+|. .+. ...+|++|+++
T Consensus 263 ~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~ 339 (562)
T 3a79_B 263 WKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSIS 339 (562)
T ss_dssp HHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEE
T ss_pred HHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEcc
Confidence 431 2222 23599999999999998888877 5666666666666665 3442 221 12579999999
Q ss_pred cCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccc--cCCccccCCCCCCEEEccCCcCcc
Q 038187 367 YNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVG--PIPSSVGHLTQLTTFDMHSNRING 444 (560)
Q Consensus 367 ~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~ 444 (560)
+|.+.... ....+++|++|++++|.+++.+|..+..+++|++|++++|++++ .+|..+..+++|++|++++|++++
T Consensus 340 ~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 340 DTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp SSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred CCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence 99886432 12678999999999999999899999999999999999999986 335678899999999999999998
Q ss_pred cCCc-cccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCccccCcc-C
Q 038187 445 SIPL-EIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFINGKIPSQ-L 522 (560)
Q Consensus 445 ~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l 522 (560)
.+|. .+..+++|++|++++|++++.+|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +
T Consensus 418 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~ 493 (562)
T 3a79_B 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVF 493 (562)
T ss_dssp CCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTST
T ss_pred ccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHH
Confidence 5665 478899999999999999987776554 79999999999999 78888889999999999999999 57766 9
Q ss_pred CCCCCCCEEeCCCCcCccccC
Q 038187 523 GEIPSIDTVNLCTNNLYGSIP 543 (560)
Q Consensus 523 ~~l~~L~~L~ls~n~l~~~ip 543 (560)
..+++|+.+++++|++.+..|
T Consensus 494 ~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 494 DRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TTCTTCCCEECCSCCBCCCHH
T ss_pred hcCCCCCEEEecCCCcCCCcc
Confidence 999999999999999998655
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=8.8e-40 Score=338.35 Aligned_cols=400 Identities=21% Similarity=0.264 Sum_probs=278.8
Q ss_pred CCeEEEeccccCCCCceeecCCCCccccccccccCCCCCccEEECcCCCCCCcCccccCCCCCC-------------CEE
Q 038187 81 GSVTGVSLLLYENDNIKGELGRFNFSCFPNLKKMGRLRNLVHLDLSDNYIEGYILPTLGHLSKL-------------ENL 147 (560)
Q Consensus 81 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-------------~~L 147 (560)
.+++.++++ ++.+ |.+|+ . ++++++|++|++++|.+.+.+|..++++++| ++|
T Consensus 11 ~~L~~L~l~---~n~l-~~iP~-~---------i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L 76 (454)
T 1jl5_A 11 TFLQEPLRH---SSNL-TEMPV-E---------AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHEL 76 (454)
T ss_dssp -------------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEE
T ss_pred ccchhhhcc---cCch-hhCCh-h---------HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEE
Confidence 356667776 6666 77876 4 8999999999999999999999999998865 999
Q ss_pred ECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEcccCCCCccCccccCCCCCCCEEeCCCCccc
Q 038187 148 NLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELV 227 (560)
Q Consensus 148 ~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~ 227 (560)
++++|.+++ +|.. .++|++|++++|.+++ +|.. +++|++|++++|.+++ ++.. .++|++|++++|+++
T Consensus 77 ~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 77 ELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE 144 (454)
T ss_dssp ECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS
T ss_pred EecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC
Confidence 999999986 4432 3789999999999986 6653 4899999999999885 3321 279999999999999
Q ss_pred ccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCCcCCccccccCCCCCCEEECcCCCCccccCcccC
Q 038187 228 GPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLG 307 (560)
Q Consensus 228 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~ 307 (560)
+ +| .++++++|++|++++|++++ +|.. ..+|++|++++|++.+ +| .+..+++|+.|++++|.+++ +|..
T Consensus 145 ~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~-- 213 (454)
T 1jl5_A 145 K-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL-- 213 (454)
T ss_dssp S-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC--
T ss_pred C-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC--
Confidence 6 67 59999999999999999985 5554 3589999999999986 56 68999999999999999986 4432
Q ss_pred CCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEE
Q 038187 308 HLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSL 387 (560)
Q Consensus 308 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L 387 (560)
.++|++|++++|.+. .+|. ++.+++|++|++++|++++ +|.. +++|++|++++|.+.+ +|.. .++|++|
T Consensus 214 -~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L 282 (454)
T 1jl5_A 214 -PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFL 282 (454)
T ss_dssp -CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred -cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEE
Confidence 358999999999998 6775 8999999999999999985 5543 4889999999999986 4543 4899999
Q ss_pred eccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCccc
Q 038187 388 FLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLD 467 (560)
Q Consensus 388 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 467 (560)
++++|.+++. +. ..++|+.|++++|++++ ++.. .++|++|++++|++++ +|.. +++|++|++++|+++
T Consensus 283 ~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~-i~~~---~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~ 350 (454)
T 1jl5_A 283 DVSENIFSGL-SE---LPPNLYYLNASSNEIRS-LCDL---PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA 350 (454)
T ss_dssp ECCSSCCSEE-SC---CCTTCCEEECCSSCCSE-ECCC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred ECcCCccCcc-cC---cCCcCCEEECcCCcCCc-ccCC---cCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc
Confidence 9999999873 21 12689999999999985 3321 2589999999999995 6654 588999999999999
Q ss_pred ccCchhhhcCCCCCeeeCccCcccc--cChhhhhcC-------------cCCCeeeCcCCcCcc--ccCccCCCCCCCCE
Q 038187 468 GPIPPQLLNCSRLRALSLSNNLLSG--SIPSEIGKL-------------KELYYLDLSQNFING--KIPSQLGEIPSIDT 530 (560)
Q Consensus 468 ~~~~~~l~~~~~L~~L~Ls~n~l~~--~~p~~l~~l-------------~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~ 530 (560)
.+|. .+++|++|++++|++++ .+|.++..+ ++|+.|++++|++++ .+|.. ++.
T Consensus 351 -~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s------l~~ 420 (454)
T 1jl5_A 351 -EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES------VED 420 (454)
T ss_dssp -CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------------------------
T ss_pred -cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhh------Hhh
Confidence 4665 47899999999999998 788888887 889999999999997 67754 667
Q ss_pred EeCCCCcCccccCccCCCCC
Q 038187 531 VNLCTNNLYGSIPESLRKVP 550 (560)
Q Consensus 531 L~ls~n~l~~~ip~~~~~l~ 550 (560)
|++++|.+.+.+|.+.....
T Consensus 421 L~~~~~~~~~~~~~~~~~~~ 440 (454)
T 1jl5_A 421 LRMNSERVVDPYEFAHETTD 440 (454)
T ss_dssp --------------------
T ss_pred eeCcCcccCCccccCHHHhh
Confidence 78899999999988766543
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.1e-39 Score=335.78 Aligned_cols=356 Identities=23% Similarity=0.260 Sum_probs=252.8
Q ss_pred cCCCCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCC
Q 038187 114 MGRLRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQ 193 (560)
Q Consensus 114 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 193 (560)
+.++++|++|++++|.+++. | .++.+++|++|++++|.+++. | ++.+++|++|++++|.+++. + ++++++|+
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~ 109 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLT 109 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred hhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCC
Confidence 67788999999999998875 3 688999999999999998864 3 88899999999999998864 3 88899999
Q ss_pred EEEcccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCC
Q 038187 194 VLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNK 273 (560)
Q Consensus 194 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~ 273 (560)
+|++++|.+++. + ++.+++|++|++++|++++. .++.+++|++|++++|+..+.+ .+..+++|++|++++|+
T Consensus 110 ~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 110 YLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp EEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence 999999998863 3 78899999999999998874 3788899999999998665555 47788899999999998
Q ss_pred CcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcC
Q 038187 274 LEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLE 353 (560)
Q Consensus 274 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 353 (560)
+++ +| +..+++|+.|++++|.+++. .++.+++|++|++++|++.+ +| ++.+++|++|++++|++++..
T Consensus 182 l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~--- 249 (457)
T 3bz5_A 182 ITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD--- 249 (457)
T ss_dssp CCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---
T ss_pred cce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---
Confidence 886 44 77888899999999988865 37788899999999998886 55 778889999999999888643
Q ss_pred ccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCC
Q 038187 354 IGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLT 433 (560)
Q Consensus 354 ~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 433 (560)
+..+++|+.|++++| +|+.|++++|.+.+.+| ++.+++|+.|++++|+..+.+|.. .++|+
T Consensus 250 ~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~---~~~L~ 310 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ---AAGIT 310 (457)
T ss_dssp CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT---TCCCS
T ss_pred HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccC---CCcce
Confidence 446677777777654 45566777777666655 456677777777777766555531 22333
Q ss_pred EEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCc
Q 038187 434 TFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNF 513 (560)
Q Consensus 434 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 513 (560)
.|++++| ++|++|++++|++++. + +..+++|+.|++++|++++ ++.|..|++++|.
T Consensus 311 ~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~ 366 (457)
T 3bz5_A 311 ELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNN 366 (457)
T ss_dssp CCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTS
T ss_pred Eechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCc
Confidence 3333222 3455555555555542 1 4455555555555555553 1233444455555
Q ss_pred CccccCccCCCCCCCCEEeCCCCcCccccCcc
Q 038187 514 INGKIPSQLGEIPSIDTVNLCTNNLYGSIPES 545 (560)
Q Consensus 514 l~~~~p~~l~~l~~L~~L~ls~n~l~~~ip~~ 545 (560)
+.|. ..+..|+.+++++|+++|.||..
T Consensus 367 l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 367 FEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp EEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred EEec-----ceeeecCccccccCcEEEEcChh
Confidence 5443 12233444455555555555544
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1e-38 Score=333.08 Aligned_cols=379 Identities=25% Similarity=0.391 Sum_probs=306.8
Q ss_pred CCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEcccCCCCccCccccCCCCCCCE
Q 038187 139 GHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRS 218 (560)
Q Consensus 139 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 218 (560)
..++++++|+++++.+.. +| .+..+++|++|++++|.+.+..+ +.++++|++|++++|.+++..+ +.++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 346789999999999874 45 48889999999999999986544 8999999999999999986544 899999999
Q ss_pred EeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCCcCCccccccCCCCCCEEECcCCCC
Q 038187 219 LDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQ 298 (560)
Q Consensus 219 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 298 (560)
|++++|.+++..+ +..+++|++|++++|.+.+. + .+..+++|++|+++ +.+.+.. .+..+++|+.|++++|.+
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKV 189 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcC
Confidence 9999999986533 89999999999999998853 3 48899999999996 4555332 388899999999999998
Q ss_pred ccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhc
Q 038187 299 TGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTI 378 (560)
Q Consensus 299 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l 378 (560)
.+. ..+..+++|++|++++|.+.+..+ ++.+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+ +
T Consensus 190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~ 261 (466)
T 1o6v_A 190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L 261 (466)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--h
Confidence 764 347889999999999999886654 67899999999999998853 467788999999999999986654 7
Q ss_pred cCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCe
Q 038187 379 ASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVED 458 (560)
Q Consensus 379 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 458 (560)
..+++|++|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|++|++++|++++..| +..+++|++
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 335 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence 888999999999999887543 7788999999999999886543 7788999999999999987655 678899999
Q ss_pred eecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCccccCccCC-------CCCCCCEE
Q 038187 459 VYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFINGKIPSQLG-------EIPSIDTV 531 (560)
Q Consensus 459 L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-------~l~~L~~L 531 (560)
|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++ +|..+. .+.++...
T Consensus 336 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~-~p~~~~~~~~ip~~~~~~~~~ 410 (466)
T 1o6v_A 336 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN-APVNYKANVSIPNTVKNVTGA 410 (466)
T ss_dssp EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC-CCBCCCSEEEEECCCBCTTSC
T ss_pred eECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC-CchhhcccceecccccccCCC
Confidence 99999999865 468889999999999999998776 8888999999999998886 233221 12333444
Q ss_pred eCCCCcCcc----ccCccCCCC
Q 038187 532 NLCTNNLYG----SIPESLRKV 549 (560)
Q Consensus 532 ~ls~n~l~~----~ip~~~~~l 549 (560)
.++.+.+++ .+|.++-++
T Consensus 411 ~~~~~~is~~g~~~~~~~~w~~ 432 (466)
T 1o6v_A 411 LIAPATISDGGSYTEPDITWNL 432 (466)
T ss_dssp BCCCSEESTTCEEETTEEEEEC
T ss_pred eecCceecCCcEEeCCceEECC
Confidence 555555543 456554444
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.2e-38 Score=330.50 Aligned_cols=347 Identities=31% Similarity=0.423 Sum_probs=302.5
Q ss_pred CCCCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCE
Q 038187 115 GRLRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQV 194 (560)
Q Consensus 115 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 194 (560)
..+++++.|+++++.+... +.+..+++|++|++++|.+.+..+ +.++++|++|++++|.+.+..+ +.++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~~l--~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCccC--cchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 3567999999999988763 358899999999999999986544 9999999999999999986544 899999999
Q ss_pred EEcccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCC
Q 038187 195 LDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKL 274 (560)
Q Consensus 195 L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l 274 (560)
|++++|.+++..+ +..+++|++|++++|.+.+. + .+..+++|++|++. +.+.+.. .+..+++|++|++++|.+
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKV 189 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcC
Confidence 9999999986533 89999999999999998863 3 58999999999997 4454332 388999999999999998
Q ss_pred cCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCc
Q 038187 275 EGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEI 354 (560)
Q Consensus 275 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 354 (560)
.+. ..+..+++|++|++++|.+.+..+ ++.+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+ +
T Consensus 190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~ 261 (466)
T 1o6v_A 190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L 261 (466)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--h
Confidence 754 347889999999999999987655 77899999999999998753 357899999999999999986544 8
Q ss_pred cCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCE
Q 038187 355 GNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTT 434 (560)
Q Consensus 355 ~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 434 (560)
..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|++++..| +..+++|++
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 335 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence 889999999999999987544 8899999999999999987644 7889999999999999997665 788999999
Q ss_pred EEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccc
Q 038187 435 FDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSG 492 (560)
Q Consensus 435 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~ 492 (560)
|++++|++++. ..+..+++|++|++++|++++..| +..+++|+.|++++|.+++
T Consensus 336 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 336 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred eECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 99999999864 468899999999999999998776 8899999999999999996
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.2e-38 Score=326.90 Aligned_cols=398 Identities=20% Similarity=0.246 Sum_probs=290.4
Q ss_pred CCCeEEEeccccCCCCceeecCCCCccccccccccCCCCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCC
Q 038187 80 AGSVTGVSLLLYENDNIKGELGRFNFSCFPNLKKMGRLRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIP 159 (560)
Q Consensus 80 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~ 159 (560)
..+++.++++ ++.+.+ +|. +..+++|++|++++|.+++. + ++.+++|++|++++|.+++. +
T Consensus 41 l~~L~~L~Ls---~n~l~~-~~~-----------l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~ 101 (457)
T 3bz5_A 41 LATLTSLDCH---NSSITD-MTG-----------IEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D 101 (457)
T ss_dssp HTTCCEEECC---SSCCCC-CTT-----------GGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C
T ss_pred cCCCCEEEcc---CCCccc-Chh-----------hcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e
Confidence 4678999998 665554 343 88999999999999999985 2 89999999999999999874 3
Q ss_pred cCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEcccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCC
Q 038187 160 STLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTE 239 (560)
Q Consensus 160 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 239 (560)
++++++|++|++++|.+++ +| ++++++|++|++++|.+++. .++.+++|++|++++|...+.+ .+..+++
T Consensus 102 --~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~ 171 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQ 171 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred --cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCc
Confidence 8999999999999999986 44 89999999999999999974 3889999999999999766565 4789999
Q ss_pred CCEEEeecCcCCccCcccccCCCCCCEEECcCCCCcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccC
Q 038187 240 LTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSG 319 (560)
Q Consensus 240 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 319 (560)
|++|++++|++++ +| +..+++|++|++++|++++. .+..+++|+.|++++|.+++ +| ++.+++|+.|++++
T Consensus 172 L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 172 LTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSV 242 (457)
T ss_dssp CCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCS
T ss_pred CCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeC
Confidence 9999999999996 44 88999999999999999875 37889999999999999998 45 88999999999999
Q ss_pred CcCcccCCccccCCCCCCEEEccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCc
Q 038187 320 NNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIP 399 (560)
Q Consensus 320 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 399 (560)
|.+.+.. ++.+++|+.|+++.|. |+.+++++|.+.+.+| +..+++|+.|++++|...+.+|
T Consensus 243 N~l~~~~---~~~l~~L~~L~l~~n~--------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 243 NPLTELD---VSTLSKLTTLHCIQTD--------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp SCCSCCC---CTTCTTCCEEECTTCC--------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred CcCCCcC---HHHCCCCCEEeccCCC--------------CCEEECCCCccCCccc--ccccccCCEEECCCCcccceec
Confidence 9998753 4567777777766543 3445555555555444 3455666666666665544443
Q ss_pred c--------cccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCc
Q 038187 400 S--------TLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIP 471 (560)
Q Consensus 400 ~--------~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 471 (560)
. .+..+++|++|++++|++++. + +..+++|+.|++++|++++ ++.|..|++++|.+.|.
T Consensus 304 ~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-- 370 (457)
T 3bz5_A 304 CQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-- 370 (457)
T ss_dssp CTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE--
T ss_pred cCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec--
Confidence 2 133446777888888887763 2 6777788888888887774 24566677777777765
Q ss_pred hhhhcCCCCCeeeCccCcccccChhhhhc-CcCCCeeeCcCCcCccccCc--cCCCCC-----CCCEEeCCCCcCccccC
Q 038187 472 PQLLNCSRLRALSLSNNLLSGSIPSEIGK-LKELYYLDLSQNFINGKIPS--QLGEIP-----SIDTVNLCTNNLYGSIP 543 (560)
Q Consensus 472 ~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~--~l~~l~-----~L~~L~ls~n~l~~~ip 543 (560)
..+..|+.+++++|+++|.+|..+.. ..++....-..+........ .+.+++ -+.....++|.++|+|+
T Consensus 371 ---~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~~~~~~~y~~~~~~i~~k~~~~~~~~~~y~~~~~~~~fsG~i~ 447 (457)
T 3bz5_A 371 ---GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGTVT 447 (457)
T ss_dssp ---EEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEEESSSEEEETTTTEEEESSCCTTSCEECEEEECTTSSEEEEEE
T ss_pred ---ceeeecCccccccCcEEEEcChhHhcccCceeeccCCCCccccCCCCeeEEEeccCCCceEEEEEecCCcEEeeEec
Confidence 34556777888888888887765533 23343333333222110000 011111 12333445788888888
Q ss_pred ccCCCCC
Q 038187 544 ESLRKVP 550 (560)
Q Consensus 544 ~~~~~l~ 550 (560)
..+....
T Consensus 448 ~p~~~~~ 454 (457)
T 3bz5_A 448 TPFEAPQ 454 (457)
T ss_dssp EEBC---
T ss_pred ccccccc
Confidence 7766543
No 33
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.7e-40 Score=323.31 Aligned_cols=290 Identities=28% Similarity=0.430 Sum_probs=165.5
Q ss_pred CccHHHHHHHHcCCCCCC--CCCCCCCCCCCCcc--ccceecCCC---CCeEEEeccccCCCCcee--ecCCCCcccccc
Q 038187 40 SPIQLERKALLGTGWWVN--NGATSGNYTSNHCK--WTGISCNSA---GSVTGVSLLLYENDNIKG--ELGRFNFSCFPN 110 (560)
Q Consensus 40 ~~~~~~~~~ll~~~~~~~--~~~~~~~~~~~~C~--w~gv~C~~~---~~v~~l~l~~~~~~~~~~--~~~~~~~~~~~~ 110 (560)
.|.+.|++||++++.... ....+|+.+.|||. |.||+|+.. ++|+.++++ +..+.| .+|+ .
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~---~~~l~~~~~~~~-~------ 71 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLS---GLNLPKPYPIPS-S------ 71 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEE---CCCCSSCEECCG-G------
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECC---CCCccCCcccCh-h------
Confidence 477889999998754332 22345556778998 999999753 677777776 555555 4443 2
Q ss_pred ccccCCCCCccEEECcC-CCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCC
Q 038187 111 LKKMGRLRNLVHLDLSD-NYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENL 189 (560)
Q Consensus 111 ~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l 189 (560)
+.++++|++|++++ |.+.+.+|..|+++++|++|++++|.+++.+|..|.++++|++|++++|.+.+.+|..+.++
T Consensus 72 ---l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 148 (313)
T 1ogq_A 72 ---LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148 (313)
T ss_dssp ---GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred ---HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence 55556666666663 55555555556666666666666666655555555556666666666666555555555555
Q ss_pred CCCCEEEcccCCCCccCccccCCCC-CCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEE
Q 038187 190 NFLQVLDLSRNEIGGSIPSTLGHLK-RLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLD 268 (560)
Q Consensus 190 ~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 268 (560)
++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..++ |++|++++|.+++..|..+..+++|++|+
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 227 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIH 227 (313)
T ss_dssp TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEE
Confidence 5666666665555555555555554 555555555555555555555554 55555555555555555555555555555
Q ss_pred CcCCCCcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCc
Q 038187 269 LSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNR 345 (560)
Q Consensus 269 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 345 (560)
+++|.+++..+. +..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|.. ..+++|+.+++++|.
T Consensus 228 L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 228 LAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred CCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 555555443333 444445555555555554444444444444555555444444444442 444444444444444
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-36 Score=318.29 Aligned_cols=321 Identities=20% Similarity=0.203 Sum_probs=233.6
Q ss_pred ccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEccc
Q 038187 120 LVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSR 199 (560)
Q Consensus 120 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 199 (560)
-+.++.+++.++. +|..+. +++++|+|++|.+.+..+..|.++++|++|+|++|.+.+..|..|.++++|++|++++
T Consensus 13 ~~~v~c~~~~l~~-ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 13 DRAVLCHRKRFVA-VPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TTEEECCSCCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-CCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 3578888887765 344443 5889999999998887788888999999999999988877788888899999999999
Q ss_pred CCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCCcCCcc
Q 038187 200 NEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIP 279 (560)
Q Consensus 200 n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 279 (560)
|.++...+..|.++++|++|++++|++.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 98886666667888899999999888888878888888888888888888887777778888888888888888876666
Q ss_pred ccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCccCCCC
Q 038187 280 STIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNF 359 (560)
Q Consensus 280 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 359 (560)
..+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.++.......+|++|++++|.+++..+..+..+++
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 249 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc
Confidence 66777788888888888777766667777777777777777666665555555556666666666666332234556666
Q ss_pred CCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccC
Q 038187 360 LQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHS 439 (560)
Q Consensus 360 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~ 439 (560)
|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCS
T ss_pred cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccC
Confidence 66666666666655555556666666666666666665555666666666666666666554444555556666666666
Q ss_pred CcCc
Q 038187 440 NRIN 443 (560)
Q Consensus 440 n~l~ 443 (560)
|++.
T Consensus 330 N~l~ 333 (477)
T 2id5_A 330 NPLA 333 (477)
T ss_dssp SCEE
T ss_pred CCcc
Confidence 6554
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=318.38 Aligned_cols=352 Identities=20% Similarity=0.176 Sum_probs=292.7
Q ss_pred CCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEcccCCCCccCccccCCCCCCCEEeCCC
Q 038187 144 LENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSL 223 (560)
Q Consensus 144 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~ 223 (560)
-+.++.+++.++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 367888888887 5666554 6899999999999988788899999999999999999988888999999999999999
Q ss_pred CcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCCcCCccccccCCCCCCEEECcCCCCccccC
Q 038187 224 NELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIP 303 (560)
Q Consensus 224 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 303 (560)
|.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 99987766778999999999999999998888889999999999999999988778888899999999999999987777
Q ss_pred cccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCC
Q 038187 304 STLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVN 383 (560)
Q Consensus 304 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~ 383 (560)
..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+.++.......+|++|++++|.+++..+..+..+++
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 249 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc
Confidence 77888999999999999998877778888999999999998888777777666778999999999988665567888899
Q ss_pred CCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeeccc
Q 038187 384 LTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFN 463 (560)
Q Consensus 384 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 463 (560)
|+.|++++|.+++..+..+..+++|+.|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCS
T ss_pred cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccC
Confidence 99999999988887777788889999999999998888888888889999999999998876666778888899999999
Q ss_pred CcccccCchhhhcCCCCCeeeCccCcccccChhhhh
Q 038187 464 NKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIG 499 (560)
Q Consensus 464 n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~ 499 (560)
|++....+..+ .......+.+.++......|..+.
T Consensus 330 N~l~c~c~~~~-~~~~~~~~~~~~~~~~C~~p~~~~ 364 (477)
T 2id5_A 330 NPLACDCRLLW-VFRRRWRLNFNRQQPTCATPEFVQ 364 (477)
T ss_dssp SCEECSGGGHH-HHTTTTSSCCTTCCCBEEESGGGT
T ss_pred CCccCccchHh-HHhhhhccccCccCceeCCchHHc
Confidence 98875432211 112334455555555544454443
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.4e-35 Score=299.47 Aligned_cols=311 Identities=21% Similarity=0.217 Sum_probs=212.9
Q ss_pred CCCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEE
Q 038187 116 RLRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVL 195 (560)
Q Consensus 116 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 195 (560)
.++++++++++++.++...+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..+.++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 46789999999999887766678899999999999999988777889999999999999999988778888999999999
Q ss_pred EcccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCCc
Q 038187 196 DLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLE 275 (560)
Q Consensus 196 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~ 275 (560)
++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++. .+..+++|+.|++++|.+.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 9999999855445568899999999999998887777888888899998888888754 2456677888888877765
Q ss_pred CCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCcc
Q 038187 276 GPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIG 355 (560)
Q Consensus 276 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 355 (560)
+ +...++|+.|++++|.+..... ...++|+.|++++|.+.+. .++..+++|++|++++|.+.+..|..+.
T Consensus 200 ~-----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 200 T-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp E-----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred c-----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence 3 2234467777777776654321 1235566666666665532 3345555555555555555544444555
Q ss_pred CCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEE
Q 038187 356 NFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTF 435 (560)
Q Consensus 356 ~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 435 (560)
.+++|++|++++|.++ + ++..+..+++|++|++++|+++ .+|..+..+++|++|
T Consensus 270 ~l~~L~~L~L~~n~l~------------------------~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L 323 (390)
T 3o6n_A 270 KMQRLERLYISNNRLV------------------------A-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 323 (390)
T ss_dssp TCSSCCEEECCSSCCC------------------------E-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred ccccCCEEECCCCcCc------------------------c-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEE
Confidence 5555555555555444 3 2223344455555555555554 344444555555555
Q ss_pred EccCCcCcccCCccccCCCCCCeeecccCcccc
Q 038187 436 DMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDG 468 (560)
Q Consensus 436 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 468 (560)
++++|+++.. + +..+++|++|++++|++..
T Consensus 324 ~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 324 YLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp ECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred ECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 5555555522 2 4455566666666666654
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5.9e-35 Score=313.84 Aligned_cols=311 Identities=21% Similarity=0.205 Sum_probs=242.6
Q ss_pred CCCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEE
Q 038187 116 RLRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVL 195 (560)
Q Consensus 116 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 195 (560)
.+++++.+++++|.+....+..+..+++|++|+|++|.+.+..|..|+.+++|++|++++|.+.+..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46789999999999988777778999999999999999998888899999999999999999998888888999999999
Q ss_pred EcccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCCc
Q 038187 196 DLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLE 275 (560)
Q Consensus 196 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~ 275 (560)
++++|.+++..+..|..+++|++|++++|.+++..|..|+.+++|++|++++|.+++.. +..+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 99999999666666789999999999999999888888999999999999999988642 456788889999888776
Q ss_pred CCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCcc
Q 038187 276 GPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIG 355 (560)
Q Consensus 276 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 355 (560)
+ +...++|+.|++++|.+....+.. .++|+.|++++|.+.+. .++..+++|++|++++|.+.+..|..+.
T Consensus 206 ~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 206 T-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp E-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred c-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 4 334567888888888876543322 35788888888877653 4567777777777777777777777777
Q ss_pred CCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEE
Q 038187 356 NFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTF 435 (560)
Q Consensus 356 ~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 435 (560)
.+++|++|++++|.+.+ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++. + +..+++|++|
T Consensus 276 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L 350 (597)
T 3oja_B 276 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNL 350 (597)
T ss_dssp TCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEE
T ss_pred CccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEE
Confidence 77777777777777764 3555556677777777777666 3555566667777777777776643 2 4456666667
Q ss_pred EccCCcCcc
Q 038187 436 DMHSNRING 444 (560)
Q Consensus 436 ~l~~n~l~~ 444 (560)
++++|++.+
T Consensus 351 ~l~~N~~~~ 359 (597)
T 3oja_B 351 TLSHNDWDC 359 (597)
T ss_dssp ECCSSCEEH
T ss_pred EeeCCCCCC
Confidence 776666654
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.1e-34 Score=293.62 Aligned_cols=309 Identities=21% Similarity=0.170 Sum_probs=203.7
Q ss_pred CCCCCEEEcccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEE
Q 038187 189 LNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLD 268 (560)
Q Consensus 189 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 268 (560)
++++++|+++++.++...+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..++.+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 57899999999998855445578899999999999999887777889999999999999998887777888889999999
Q ss_pred CcCCCCcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccc
Q 038187 269 LSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRING 348 (560)
Q Consensus 269 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 348 (560)
+++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+++|+++++++|.+.+
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc
Confidence 998888854444467888888888888888877777788888888888888887653 24566777788887777663
Q ss_pred cCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccC
Q 038187 349 SIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGH 428 (560)
Q Consensus 349 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~ 428 (560)
. ...++|++|++++|.+... |. ...++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+..
T Consensus 201 ~-----~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (390)
T 3o6n_A 201 L-----AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK 270 (390)
T ss_dssp E-----ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred c-----CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc
Confidence 2 2334667777777666533 22 1234566666666655543 34455555555555555555555555555
Q ss_pred CCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeee
Q 038187 429 LTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLD 508 (560)
Q Consensus 429 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 508 (560)
+++|++|++++|++++ ++..+..+++|++|++++|++. .+|..+..+++|++|++++|++++. + +..+++|+.|+
T Consensus 271 l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~ 345 (390)
T 3o6n_A 271 MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLT 345 (390)
T ss_dssp CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEE
T ss_pred cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEE
Confidence 5555555555555552 3333344455555555555554 3344444445555555555554422 1 33444455555
Q ss_pred CcCCcCc
Q 038187 509 LSQNFIN 515 (560)
Q Consensus 509 L~~n~l~ 515 (560)
+++|++.
T Consensus 346 l~~N~~~ 352 (390)
T 3o6n_A 346 LSHNDWD 352 (390)
T ss_dssp CCSSCEE
T ss_pred cCCCCcc
Confidence 5555444
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=8.9e-34 Score=284.31 Aligned_cols=306 Identities=27% Similarity=0.385 Sum_probs=179.3
Q ss_pred CCCCCCCEEEcccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCE
Q 038187 187 ENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQV 266 (560)
Q Consensus 187 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 266 (560)
..+++|++|+++++.+.. ++ .+..+++|++|++++|.+++.. . +..+++|++|++++|.++. + ..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~-~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~ 114 (347)
T 4fmz_A 41 EELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDIS-P-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRE 114 (347)
T ss_dssp HHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSE
T ss_pred hhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccch-h-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCE
Confidence 345666666666666552 22 2555666666666666555332 2 5555555555555555543 2 23455555555
Q ss_pred EECcCCCCcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcc
Q 038187 267 LDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRI 346 (560)
Q Consensus 267 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 346 (560)
|++++|.+.+. +. +..+++|+.|++++| ......+. +..+++|++|++++|.+
T Consensus 115 L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n------------------------~~~~~~~~-~~~l~~L~~L~l~~~~~ 167 (347)
T 4fmz_A 115 LYLNEDNISDI-SP-LANLTKMYSLNLGAN------------------------HNLSDLSP-LSNMTGLNYLTVTESKV 167 (347)
T ss_dssp EECTTSCCCCC-GG-GTTCTTCCEEECTTC------------------------TTCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred EECcCCcccCc-hh-hccCCceeEEECCCC------------------------CCcccccc-hhhCCCCcEEEecCCCc
Confidence 55555554432 11 444444555555444 33322222 44455555555555554
Q ss_pred cccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccc
Q 038187 347 NGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSV 426 (560)
Q Consensus 347 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~ 426 (560)
.+..+ +..+++|++|++++|.+.+..+ +..+++|+.+++++|.+++..+ +..+++|++|++++|++++..+ +
T Consensus 168 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~ 239 (347)
T 4fmz_A 168 KDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--L 239 (347)
T ss_dssp CCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred CCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--h
Confidence 42221 4455555555555555543222 4555666666666666554432 5566666666666666664322 6
Q ss_pred cCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCe
Q 038187 427 GHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYY 506 (560)
Q Consensus 427 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 506 (560)
..+++|++|++++|.+++. ..+..+++|++|++++|++++. +.+..+++|++|++++|++++..|..+..+++|+.
T Consensus 240 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred hcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence 6667777777777766642 3466677777777777777653 34677778888888888887777777888888888
Q ss_pred eeCcCCcCccccCccCCCCCCCCEEeCCCCcCc
Q 038187 507 LDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLY 539 (560)
Q Consensus 507 L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~ 539 (560)
|++++|++++..| +..+++|+.|++++|+++
T Consensus 316 L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 316 LFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8888888876555 677788888888888765
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=7.6e-34 Score=284.79 Aligned_cols=307 Identities=27% Similarity=0.451 Sum_probs=186.5
Q ss_pred cCCCCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCC
Q 038187 114 MGRLRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQ 193 (560)
Q Consensus 114 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 193 (560)
+..+++|++|+++++.+... +.+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.. ++ .+.++++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCS
T ss_pred chhcccccEEEEeCCccccc--hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcCCCcCC
Confidence 55677888888888887653 347788888888888888875433 7888888888888888764 33 577888888
Q ss_pred EEEcccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCC
Q 038187 194 VLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNK 273 (560)
Q Consensus 194 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~ 273 (560)
+|++++|.+++. +. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 114 ~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 114 ELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred EEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 888888887743 32 7778888888888876554433 36777777777777777664333 5666677777777766
Q ss_pred CcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcC
Q 038187 274 LEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLE 353 (560)
Q Consensus 274 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 353 (560)
+.+..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. ..
T Consensus 189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~ 260 (347)
T 4fmz_A 189 IEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NA 260 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GG
T ss_pred cccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hh
Confidence 653322 5556666666666666554332 4555566666666665553222 44555555555555555431 23
Q ss_pred ccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCC
Q 038187 354 IGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLT 433 (560)
Q Consensus 354 ~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 433 (560)
+..+++|++|++++|.+ ++. ..+..+++|+.|++++|++++..|..+..+++|+
T Consensus 261 ~~~l~~L~~L~l~~n~l------------------------~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQI------------------------SDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp GTTCTTCCEEECCSSCC------------------------CCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred HhcCCCcCEEEccCCcc------------------------CCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 44444455555554444 432 2344455555555555555544445555555555
Q ss_pred EEEccCCcCcccCCccccCCCCCCeeecccCccc
Q 038187 434 TFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLD 467 (560)
Q Consensus 434 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 467 (560)
+|++++|++++..| +..+++|++|++++|+++
T Consensus 315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 315 TLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 55555555554333 445555555555555543
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.7e-34 Score=306.80 Aligned_cols=310 Identities=21% Similarity=0.162 Sum_probs=213.1
Q ss_pred CCCCCEEEcccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEE
Q 038187 189 LNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLD 268 (560)
Q Consensus 189 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 268 (560)
+.+++.+++++|.+....+..+..+++|++|++++|.+++..|..|+.+++|++|++++|.+++..|..++.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 57899999999998866666678899999999999999988888899999999999999999988788888999999999
Q ss_pred CcCCCCcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccc
Q 038187 269 LSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRING 348 (560)
Q Consensus 269 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 348 (560)
|++|.+.+..+..+..+++|++|++++|.+++..|..++.+++|++|++++|.+.+. + ++.+++|+.|++++|.+.+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCcccc
Confidence 999988865555568888888888888888888787888888888888888888754 2 4567778888888877763
Q ss_pred cCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccC
Q 038187 349 SIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGH 428 (560)
Q Consensus 349 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~ 428 (560)
. ...++|+.|++++|.+....+ . ..++|+.|++++|.+++. ..+..+++|+.|++++|.+++..|..+..
T Consensus 207 l-----~~~~~L~~L~ls~n~l~~~~~-~--~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 207 L-----AIPIAVEELDASHNSINVVRG-P--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp E-----ECCTTCSEEECCSSCCCEEEC-S--CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred c-----cCCchhheeeccCCccccccc-c--cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 2 234567777777776653221 1 124566666666666542 44555566666666666665555555555
Q ss_pred CCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeee
Q 038187 429 LTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLD 508 (560)
Q Consensus 429 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 508 (560)
+++|++|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++. + +..+++|+.|+
T Consensus 277 l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~ 351 (597)
T 3oja_B 277 MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLT 351 (597)
T ss_dssp CSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEE
T ss_pred ccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEE
Confidence 6666666666665553 3444444555555555555555 3444455555555555555555532 1 33445555555
Q ss_pred CcCCcCcc
Q 038187 509 LSQNFING 516 (560)
Q Consensus 509 L~~n~l~~ 516 (560)
+++|++.+
T Consensus 352 l~~N~~~~ 359 (597)
T 3oja_B 352 LSHNDWDC 359 (597)
T ss_dssp CCSSCEEH
T ss_pred eeCCCCCC
Confidence 55555543
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=4.2e-37 Score=320.86 Aligned_cols=379 Identities=19% Similarity=0.149 Sum_probs=250.6
Q ss_pred CCCCEEeCcCCcCCcCCcc-cCCCCCCCCEEEcccCCCCc----cCccccCCCCCCCEEeCCCCcccccCCccc-cCCC-
Q 038187 166 TRLTTLAIASNQINSSIPL-EIENLNFLQVLDLSRNEIGG----SIPSTLGHLKRLRSLDLSLNELVGPIPSSL-GHLT- 238 (560)
Q Consensus 166 ~~L~~L~L~~n~~~~~~~~-~l~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~- 238 (560)
++|++|++++|.++..... .+..+++|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 5688999999988754332 36778899999999998874 345667788999999999998876443333 2344
Q ss_pred ---CCCEEEeecCcCCc----cCcccccCCCCCCEEECcCCCCcCCcccccc-----CCCCCCEEECcCCCCcccc----
Q 038187 239 ---ELTFFNIYSNRING----SIPLEIGNFNFLQVLDLSYNKLEGPIPSTIA-----NLVNLTSLFLCNNSQTGFI---- 302 (560)
Q Consensus 239 ---~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~~~~~~---- 302 (560)
+|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 68888888888874 4577788888888888888887654443332 2457888888888877533
Q ss_pred CcccCCCCCCCEEEccCCcCcccCCcccc-----CCCCCCEEEccCCccccc----CCcCccCCCCCCEEEeecCcCcCC
Q 038187 303 PSTLGHLNRLTSLDLSGNNLVGPIPSSMG-----HLARLTTFDMHSNRINGS----IPLEIGNFNFLQVLDLSYNKLEGP 373 (560)
Q Consensus 303 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~ 373 (560)
+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 44555677888888888877654333332 355788888888877753 355556677788888887777643
Q ss_pred Cc-----hhccCCCCCCEEeccCCccccc----CcccccCCCCCCEEECcCCcccccCCcccc-----CCCCCCEEEccC
Q 038187 374 IP-----STIASLVNLTSLFLCNNSQTGF----IPSTLGHLNRLTSLDLSGNNLVGPIPSSVG-----HLTQLTTFDMHS 439 (560)
Q Consensus 374 ~~-----~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~l~~ 439 (560)
.. .....+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+. ..++|++|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 21 2223467777777777777654 455566677777777777776543332222 225777777777
Q ss_pred CcCccc----CCccccCCCCCCeeecccCcccccCchhhhc-----CCCCCeeeCccCcccc----cChhhhhcCcCCCe
Q 038187 440 NRINGS----IPLEIGNLKHVEDVYLFNNKLDGPIPPQLLN-----CSRLRALSLSNNLLSG----SIPSEIGKLKELYY 506 (560)
Q Consensus 440 n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~-----~~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~ 506 (560)
|.+++. ++..+..+++|++|++++|++.+..+..+.. .++|++|++++|.+++ .+|..+..+++|++
T Consensus 323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~ 402 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred CCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE
Confidence 777654 3445556677777777777776554444432 5677777777777775 56666777777777
Q ss_pred eeCcCCcCccccCcc----C-CCCCCCCEEeCCCCcCccccCc
Q 038187 507 LDLSQNFINGKIPSQ----L-GEIPSIDTVNLCTNNLYGSIPE 544 (560)
Q Consensus 507 L~L~~n~l~~~~p~~----l-~~l~~L~~L~ls~n~l~~~ip~ 544 (560)
|++++|++++.-... + ....+|+.|++.++.+....+.
T Consensus 403 L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~ 445 (461)
T 1z7x_W 403 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED 445 (461)
T ss_dssp EECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred EECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHH
Confidence 777777776541111 1 1123466666666655544433
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2e-34 Score=284.07 Aligned_cols=251 Identities=32% Similarity=0.513 Sum_probs=169.1
Q ss_pred CCCEEECcCCCCcc--ccCcccCCCCCCCEEEccC-CcCcccCCccccCCCCCCEEEccCCcccccCCcCccCCCCCCEE
Q 038187 287 NLTSLFLCNNSQTG--FIPSTLGHLNRLTSLDLSG-NNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVL 363 (560)
Q Consensus 287 ~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 363 (560)
+++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..++.+++|++|++++|.+++.+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 45555555555555 5555555556666666653 55555555556666666666666666665666666666666666
Q ss_pred EeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCC-CCCEEECcCCcccccCCccccCCCCCCEEEccCCcC
Q 038187 364 DLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLN-RLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRI 442 (560)
Q Consensus 364 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 442 (560)
++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..++ +|+.|++++|++++.+|..+..++ |++|++++|++
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 6666666666666666666666666666666666666666665 667777777776666666666665 77777777777
Q ss_pred cccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCccccCccC
Q 038187 443 NGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFINGKIPSQL 522 (560)
Q Consensus 443 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 522 (560)
++.+|..+..+++|++|++++|++++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|..
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~- 287 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG- 287 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-
Confidence 766666677777777777777777655544 666777777777777777777777777777778888888777777765
Q ss_pred CCCCCCCEEeCCCCc-Ccc
Q 038187 523 GEIPSIDTVNLCTNN-LYG 540 (560)
Q Consensus 523 ~~l~~L~~L~ls~n~-l~~ 540 (560)
..+++|+.+++++|+ +.|
T Consensus 288 ~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp TTGGGSCGGGTCSSSEEES
T ss_pred ccccccChHHhcCCCCccC
Confidence 677777777787776 555
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=9.2e-37 Score=318.32 Aligned_cols=379 Identities=18% Similarity=0.162 Sum_probs=263.6
Q ss_pred CCCCEEECCCCCCCCCCCcC-CCCCCCCCEEeCcCCcCCc----CCcccCCCCCCCCEEEcccCCCCccCcccc-CCCC-
Q 038187 142 SKLENLNLSSNALDGNIPST-LGHLTRLTTLAIASNQINS----SIPLEIENLNFLQVLDLSRNEIGGSIPSTL-GHLK- 214 (560)
Q Consensus 142 ~~L~~L~L~~n~~~~~~~~~-~~~l~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~- 214 (560)
++|++|++++|.++...... +..+++|++|++++|.+.. .++..+..+++|++|++++|.++...+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 56788888888876543333 5677888888888888764 345566777888888888888765433322 2233
Q ss_pred ---CCCEEeCCCCcccc----cCCccccCCCCCCEEEeecCcCCccCcccc-----cCCCCCCEEECcCCCCcCCc----
Q 038187 215 ---RLRSLDLSLNELVG----PIPSSLGHLTELTFFNIYSNRINGSIPLEI-----GNFNFLQVLDLSYNKLEGPI---- 278 (560)
Q Consensus 215 ---~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~---- 278 (560)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+ ...++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 68888888888774 456777888888888888888765444332 23567888888888877643
Q ss_pred cccccCCCCCCEEECcCCCCccccCcccC-----CCCCCCEEEccCCcCccc----CCccccCCCCCCEEEccCCccccc
Q 038187 279 PSTIANLVNLTSLFLCNNSQTGFIPSTLG-----HLNRLTSLDLSGNNLVGP----IPSSMGHLARLTTFDMHSNRINGS 349 (560)
Q Consensus 279 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~ 349 (560)
+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+.+. ++..+..+++|++|++++|.+++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 44556678888888888887654433332 256888888888887753 455667788888888888887653
Q ss_pred C-----CcCccCCCCCCEEEeecCcCcCC----CchhccCCCCCCEEeccCCcccccCccccc-----CCCCCCEEECcC
Q 038187 350 I-----PLEIGNFNFLQVLDLSYNKLEGP----IPSTIASLVNLTSLFLCNNSQTGFIPSTLG-----HLNRLTSLDLSG 415 (560)
Q Consensus 350 ~-----~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~L~~ 415 (560)
. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+. ..++|++|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 2 22233577888888888888754 466666788888888888887754333332 236888888888
Q ss_pred Cccccc----CCccccCCCCCCEEEccCCcCcccCCccccC-----CCCCCeeecccCcccc----cCchhhhcCCCCCe
Q 038187 416 NNLVGP----IPSSVGHLTQLTTFDMHSNRINGSIPLEIGN-----LKHVEDVYLFNNKLDG----PIPPQLLNCSRLRA 482 (560)
Q Consensus 416 n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~----~~~~~l~~~~~L~~ 482 (560)
|.+++. ++..+..+++|++|++++|++++..+..+.. .++|++|++++|++++ .+|..+..+++|++
T Consensus 323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~ 402 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred CCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE
Confidence 887754 4556667788888888888887654443332 5688888888888876 67777788888888
Q ss_pred eeCccCcccccChhhhhc-----CcCCCeeeCcCCcCccccCc
Q 038187 483 LSLSNNLLSGSIPSEIGK-----LKELYYLDLSQNFINGKIPS 520 (560)
Q Consensus 483 L~Ls~n~l~~~~p~~l~~-----l~~L~~L~L~~n~l~~~~p~ 520 (560)
|++++|++++.....+.. ..+|+.|++.++.+....++
T Consensus 403 L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~ 445 (461)
T 1z7x_W 403 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED 445 (461)
T ss_dssp EECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred EECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHH
Confidence 888888887653333321 34577777777776644433
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=4e-31 Score=263.01 Aligned_cols=247 Identities=22% Similarity=0.291 Sum_probs=137.3
Q ss_pred CCCEEeCcCCcCCcCCcccCCCCCCCCEEEcccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEee
Q 038187 167 RLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIY 246 (560)
Q Consensus 167 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 246 (560)
++++++++++.+. .+|..+. +++++|++++|.+++..+..+.++++|++|++++|.+++..|..+..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 5777777777665 4454443 567777777777765555566667777777777776666656666666666666666
Q ss_pred cCcCCccCcccccCCCCCCEEECcCCCCcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccC
Q 038187 247 SNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPI 326 (560)
Q Consensus 247 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 326 (560)
+|+++ .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.. .+..
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~~~ 163 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS----------------------SGIE 163 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG----------------------GGBC
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc----------------------cCcC
Confidence 66665 3333322 455555555555554444444445555555555544432 1123
Q ss_pred CccccCCCCCCEEEccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCC
Q 038187 327 PSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLN 406 (560)
Q Consensus 327 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 406 (560)
+..+..+++|++|++++|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..++
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 240 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST
T ss_pred hhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC
Confidence 333444455555555555444 2332221 4555555555555555455555555555555555555555444555555
Q ss_pred CCCEEECcCCcccccCCccccCCCCCCEEEccCCcCccc
Q 038187 407 RLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGS 445 (560)
Q Consensus 407 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 445 (560)
+|++|++++|+++ .+|.++..+++|++|++++|++++.
T Consensus 241 ~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 241 HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 278 (330)
T ss_dssp TCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred CCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCcc
Confidence 6666666666555 4555555556666666666665543
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=5.7e-31 Score=261.89 Aligned_cols=246 Identities=22% Similarity=0.290 Sum_probs=139.3
Q ss_pred CccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEcc
Q 038187 119 NLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLS 198 (560)
Q Consensus 119 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 198 (560)
+++.++++++.++. +|..+. ++|++|++++|.+++..+..|+++++|++|++++|.+.+..|..+.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 45555665555543 233222 456666666666665555556666666666666666665556666666666666666
Q ss_pred cCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCc--cCcccccCCCCCCEEECcCCCCcC
Q 038187 199 RNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRING--SIPLEIGNFNFLQVLDLSYNKLEG 276 (560)
Q Consensus 199 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~L~~n~l~~ 276 (560)
+|.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.++.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 66665 3443332 566666666666665555555666666666666665542 444455556666666666666552
Q ss_pred CccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCccC
Q 038187 277 PIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGN 356 (560)
Q Consensus 277 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 356 (560)
+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 333322 45666666666655555555555566666666666555544445555555555555555555 44555555
Q ss_pred CCCCCEEEeecCcCcCCC
Q 038187 357 FNFLQVLDLSYNKLEGPI 374 (560)
Q Consensus 357 l~~L~~L~l~~n~~~~~~ 374 (560)
+++|++|++++|.+++..
T Consensus 262 l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp CSSCCEEECCSSCCCCCC
T ss_pred CCCcCEEECCCCcCCccC
Confidence 555555555555555433
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=3.4e-31 Score=263.69 Aligned_cols=224 Identities=23% Similarity=0.298 Sum_probs=112.5
Q ss_pred CCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCCcCCccccccCCCCCCEEECc
Q 038187 215 RLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLC 294 (560)
Q Consensus 215 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 294 (560)
+|++|++++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+. .+|..+. ++|++|+++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECC
Confidence 3444444444444333334444444444444444444333444444444444444444444 2332222 355555555
Q ss_pred CCCCccccCcccCCCCCCCEEEccCCcCcc--cCCccccCCCCCCEEEccCCcccccCCcCccCCCCCCEEEeecCcCcC
Q 038187 295 NNSQTGFIPSTLGHLNRLTSLDLSGNNLVG--PIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEG 372 (560)
Q Consensus 295 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 372 (560)
+|.+.+..+..+..+++|++|++++|.+.. ..+..+..+ +|++|++++|.+++ +|..+. ++|++|++++|.+.+
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~ 207 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQA 207 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCC
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCc
Confidence 555554444445555555555555555532 334444444 55666666665553 333322 455555666655555
Q ss_pred CCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccC
Q 038187 373 PIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSI 446 (560)
Q Consensus 373 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 446 (560)
..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..
T Consensus 208 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVG 280 (332)
T ss_dssp CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCC
T ss_pred cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccC
Confidence 55555555555666666666555554445555556666666666555 45555555555666666655555433
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=3.6e-31 Score=263.45 Aligned_cols=289 Identities=23% Similarity=0.295 Sum_probs=166.9
Q ss_pred CCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEcccCCCCccCccccCCCCCCCEEeCC
Q 038187 143 KLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLS 222 (560)
Q Consensus 143 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~ 222 (560)
++++++++++.+. .+|..+. ++|++|++++|.+.+..|..+.++++|++|++++|.+++..|..+.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5666666666665 4454443 466666666666665555556666666666666666665555566666666666666
Q ss_pred CCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCCcCCccccccCCCCCCEEECcCCCCcccc
Q 038187 223 LNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFI 302 (560)
Q Consensus 223 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 302 (560)
+|+++ .+|..+. ++|++|++++|++.+..+..+..+++|++|++++|.++. .+..
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~~~ 165 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN----------------------SGFE 165 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG----------------------GGSC
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc----------------------CCCC
Confidence 66655 3333322 455555555555543333334444444444444444431 1233
Q ss_pred CcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCC
Q 038187 303 PSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLV 382 (560)
Q Consensus 303 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~ 382 (560)
+..+..+ +|++|++++|.+.+ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..++
T Consensus 166 ~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 241 (332)
T 2ft3_A 166 PGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP 241 (332)
T ss_dssp TTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT
T ss_pred cccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC
Confidence 4444444 56666666666553 333322 5666677777776665556666777777777777777766666677777
Q ss_pred CCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccC------CCCCCEEEccCCcCc--ccCCccccCCC
Q 038187 383 NLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGH------LTQLTTFDMHSNRIN--GSIPLEIGNLK 454 (560)
Q Consensus 383 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~------l~~L~~L~l~~n~l~--~~~~~~~~~l~ 454 (560)
+|++|++++|.++ .+|..+..+++|+.|++++|++++..+..+.. .+.|+.|++++|++. +..|..+..++
T Consensus 242 ~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~ 320 (332)
T 2ft3_A 242 TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVT 320 (332)
T ss_dssp TCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBC
T ss_pred CCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccc
Confidence 7777777777776 56666777777888888877777555544433 244556666666554 33444455555
Q ss_pred CCCeeecccC
Q 038187 455 HVEDVYLFNN 464 (560)
Q Consensus 455 ~L~~L~l~~n 464 (560)
+|+.+++++|
T Consensus 321 ~L~~l~l~~n 330 (332)
T 2ft3_A 321 DRLAIQFGNY 330 (332)
T ss_dssp CSTTEEC---
T ss_pred hhhhhhcccc
Confidence 5555555554
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.98 E-value=3.1e-33 Score=277.27 Aligned_cols=282 Identities=19% Similarity=0.203 Sum_probs=174.5
Q ss_pred ccHHHHHHHHcCCCCC---CCCCC-CC----CCCCCCccccceecCCCCCeEEEeccccCCCCceeecCCCCcccccccc
Q 038187 41 PIQLERKALLGTGWWV---NNGAT-SG----NYTSNHCKWTGISCNSAGSVTGVSLLLYENDNIKGELGRFNFSCFPNLK 112 (560)
Q Consensus 41 ~~~~~~~~ll~~~~~~---~~~~~-~~----~~~~~~C~w~gv~C~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 112 (560)
+...|+.||++++... +.++. .| ....++|.|.|+.|+.... .+.
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~----~l~----------------------- 76 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATAD----LLE----------------------- 76 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHH----HHH-----------------------
T ss_pred cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHH----HHh-----------------------
Confidence 3457889999876422 22222 23 2367899999999952110 000
Q ss_pred ccCCCCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCC
Q 038187 113 KMGRLRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFL 192 (560)
Q Consensus 113 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 192 (560)
....+++++|++++|.++ .+|+.+.++++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..+.++++|
T Consensus 77 -~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L 152 (328)
T 4fcg_A 77 -DATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRL 152 (328)
T ss_dssp -HHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTC
T ss_pred -cccccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCC
Confidence 123457888888888887 56777888889999999988888 78888888888999999888887 678888888888
Q ss_pred CEEEcccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCC
Q 038187 193 QVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYN 272 (560)
Q Consensus 193 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n 272 (560)
++|++++|.+.+.+|..+.. . ..+..+..+++|++|++++|.++ .+|..++.+++|++|++++|
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N 216 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS 216 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESS
T ss_pred CEEECCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCC
Confidence 88888888877777776543 0 01122333444555555555444 44444455555555555555
Q ss_pred CCcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCc
Q 038187 273 KLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPL 352 (560)
Q Consensus 273 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 352 (560)
.+.+ +|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|.
T Consensus 217 ~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 217 PLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp CCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred CCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 5542 333445555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CccCCCCCCEEEeecCcC
Q 038187 353 EIGNFNFLQVLDLSYNKL 370 (560)
Q Consensus 353 ~~~~l~~L~~L~l~~n~~ 370 (560)
.+..+++|+.+++..+.+
T Consensus 296 ~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 296 LIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp GGGGSCTTCEEECCGGGS
T ss_pred HHhhccCceEEeCCHHHH
Confidence 555555555555554433
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=7.5e-35 Score=313.66 Aligned_cols=437 Identities=14% Similarity=0.072 Sum_probs=310.4
Q ss_pred cCCCCCccEEECcCCCC-C--CcCccccC------------CCCCCCEEECCCCCCCCCCCcCCCC-CCC-CCEEeCcCC
Q 038187 114 MGRLRNLVHLDLSDNYI-E--GYILPTLG------------HLSKLENLNLSSNALDGNIPSTLGH-LTR-LTTLAIASN 176 (560)
Q Consensus 114 l~~l~~L~~L~L~~n~l-~--~~~~~~l~------------~l~~L~~L~L~~n~~~~~~~~~~~~-l~~-L~~L~L~~n 176 (560)
+.++++|++|+++++.. . +.+|..++ .+++|++|+|++|.+++..+..+.. +++ |++|++++|
T Consensus 69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~ 148 (592)
T 3ogk_B 69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC 148 (592)
T ss_dssp HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESC
T ss_pred HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCC
Confidence 55678899999987532 1 22332222 7899999999999887666665655 344 999999988
Q ss_pred cC-Cc-CCcccCCCCCCCCEEEcccCCCCcc----CccccCCCCCCCEEeCCCCccc----ccCCccccCCCCCCEEEee
Q 038187 177 QI-NS-SIPLEIENLNFLQVLDLSRNEIGGS----IPSTLGHLKRLRSLDLSLNELV----GPIPSSLGHLTELTFFNIY 246 (560)
Q Consensus 177 ~~-~~-~~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~l~ 246 (560)
.. .. .++....++++|++|++++|.+++. ++..+..+++|++|++++|.++ +.++..+.++++|++|+++
T Consensus 149 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~ 228 (592)
T 3ogk_B 149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG 228 (592)
T ss_dssp EEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECS
T ss_pred CCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEecc
Confidence 62 11 1223335789999999999987655 3334557889999999999886 3344556778999999999
Q ss_pred cCcCCccCcccccCCCCCCEEECcCCCCc---CCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCc
Q 038187 247 SNRINGSIPLEIGNFNFLQVLDLSYNKLE---GPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLV 323 (560)
Q Consensus 247 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 323 (560)
+|.+.+ ++..+..+++|++|+++..... +..+..+..+++|+.+++.++. .+.+|..+..+++|++|++++|.+.
T Consensus 229 ~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~ 306 (592)
T 3ogk_B 229 DFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLE 306 (592)
T ss_dssp SCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCC
T ss_pred CccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCC
Confidence 998875 6677888999999999854322 2344566778899999988753 3456777778899999999999876
Q ss_pred ccCC-ccccCCCCCCEEEccCCcccccCCcCccCCCCCCEEEeec-----------CcCcCCC-chhccCCCCCCEEecc
Q 038187 324 GPIP-SSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSY-----------NKLEGPI-PSTIASLVNLTSLFLC 390 (560)
Q Consensus 324 ~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------n~~~~~~-~~~l~~~~~L~~L~l~ 390 (560)
+... ..+..+++|++|+++++...+.++.....+++|++|++++ +.+++.. +.....+++|++|+++
T Consensus 307 ~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~ 386 (592)
T 3ogk_B 307 TEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY 386 (592)
T ss_dssp HHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE
T ss_pred HHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee
Confidence 5433 3357889999999984433333344445688999999993 4555432 2234568999999998
Q ss_pred CCcccccCcccccC-CCCCCEEECc----CCccccc-----CCccccCCCCCCEEEccCCc--CcccCCcccc-CCCCCC
Q 038187 391 NNSQTGFIPSTLGH-LNRLTSLDLS----GNNLVGP-----IPSSVGHLTQLTTFDMHSNR--INGSIPLEIG-NLKHVE 457 (560)
Q Consensus 391 ~n~l~~~~~~~~~~-~~~L~~L~L~----~n~l~~~-----~p~~~~~l~~L~~L~l~~n~--l~~~~~~~~~-~l~~L~ 457 (560)
.+.+++..+..+.. +++|+.|+++ .|.+++. ++..+..+++|++|++++|. +++..+..+. .+++|+
T Consensus 387 ~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~ 466 (592)
T 3ogk_B 387 VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVR 466 (592)
T ss_dssp ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCC
T ss_pred cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccce
Confidence 88888776666655 8899999996 5567653 33346678999999997654 5554444443 478899
Q ss_pred eeecccCccccc-CchhhhcCCCCCeeeCccCccccc-ChhhhhcCcCCCeeeCcCCcCccccCccC-CCCCCCC--EEe
Q 038187 458 DVYLFNNKLDGP-IPPQLLNCSRLRALSLSNNLLSGS-IPSEIGKLKELYYLDLSQNFINGKIPSQL-GEIPSID--TVN 532 (560)
Q Consensus 458 ~L~l~~n~l~~~-~~~~l~~~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~--~L~ 532 (560)
+|++++|++++. ++..+..+++|++|++++|.+++. ++..+..+++|++|++++|++++.-...+ ..++.+. .++
T Consensus 467 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 467 WMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIP 546 (592)
T ss_dssp EEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEEC
T ss_pred EeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEec
Confidence 999999998863 455667889999999999998765 34445678999999999999887633333 2456554 344
Q ss_pred CC----------------------CCcCccccCccCCCCCCe
Q 038187 533 LC----------------------TNNLYGSIPESLRKVPSL 552 (560)
Q Consensus 533 ls----------------------~n~l~~~ip~~~~~l~~l 552 (560)
.+ ++.+.|..|+.......|
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~l 588 (592)
T 3ogk_B 547 SRRVPEVNQQGEIREMEHPAHILAYYSLAGQRTDCPTTVRVL 588 (592)
T ss_dssp CC---------------CCCEEEEEECTTCSCSCCCTTCEEC
T ss_pred CccccccccccCCcCCcchhheEeeeecCCCccCCCCCeEec
Confidence 44 566677776665554433
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=5.6e-34 Score=306.87 Aligned_cols=417 Identities=13% Similarity=0.090 Sum_probs=313.8
Q ss_pred ccccCCCCCCCEEECCCCCC---CCCCCcCCC------------CCCCCCEEeCcCCcCCcCCcccCCC-CCC-CCEEEc
Q 038187 135 LPTLGHLSKLENLNLSSNAL---DGNIPSTLG------------HLTRLTTLAIASNQINSSIPLEIEN-LNF-LQVLDL 197 (560)
Q Consensus 135 ~~~l~~l~~L~~L~L~~n~~---~~~~~~~~~------------~l~~L~~L~L~~n~~~~~~~~~l~~-l~~-L~~L~l 197 (560)
+..+..+++|++|+++++.. .+.+|..++ .+++|++|++++|.+++..+..+.. +++ |++|++
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 45567889999999988632 134444444 6899999999999887666655655 344 999999
Q ss_pred ccCCC-Cc-cCccccCCCCCCCEEeCCCCccccc----CCccccCCCCCCEEEeecCcCC----ccCcccccCCCCCCEE
Q 038187 198 SRNEI-GG-SIPSTLGHLKRLRSLDLSLNELVGP----IPSSLGHLTELTFFNIYSNRIN----GSIPLEIGNFNFLQVL 267 (560)
Q Consensus 198 ~~n~~-~~-~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~----~~~~~~l~~l~~L~~L 267 (560)
++|.. +. .++.....+++|++|++++|.+++. ++..+..+++|++|++++|.++ +.++..+..+++|++|
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 99862 21 1222334789999999999998766 3345567899999999999987 3444556788999999
Q ss_pred ECcCCCCcCCccccccCCCCCCEEECcCCCCc---cccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCC
Q 038187 268 DLSYNKLEGPIPSTIANLVNLTSLFLCNNSQT---GFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSN 344 (560)
Q Consensus 268 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~---~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 344 (560)
++++|.+.+ ++..+..+++|++|+++..... +..+..+..+++|+.+++.++.. +.+|..+..+++|++|++++|
T Consensus 226 ~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~ 303 (592)
T 3ogk_B 226 KVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYA 303 (592)
T ss_dssp ECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTC
T ss_pred eccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCC
Confidence 999999885 6778889999999999864332 33445677889999999988643 467777888999999999999
Q ss_pred cccccCC-cCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccC-----------Cccccc-CcccccCCCCCCEE
Q 038187 345 RINGSIP-LEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCN-----------NSQTGF-IPSTLGHLNRLTSL 411 (560)
Q Consensus 345 ~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~-----------n~l~~~-~~~~~~~~~~L~~L 411 (560)
.+++... ..+..+++|++|+++++-..+.++.....+++|++|++++ +.+++. ++.....+++|++|
T Consensus 304 ~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L 383 (592)
T 3ogk_B 304 LLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM 383 (592)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEE
T ss_pred cCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEE
Confidence 9765443 3467899999999994433334444556789999999994 455543 22234568999999
Q ss_pred ECcCCcccccCCccccC-CCCCCEEEcc----CCcCccc-----CCccccCCCCCCeeecccCc--ccccCchhhhc-CC
Q 038187 412 DLSGNNLVGPIPSSVGH-LTQLTTFDMH----SNRINGS-----IPLEIGNLKHVEDVYLFNNK--LDGPIPPQLLN-CS 478 (560)
Q Consensus 412 ~L~~n~l~~~~p~~~~~-l~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~-~~ 478 (560)
+++.+.+++..+..+.. +++|++|+++ .|.+++. ++..+.++++|++|++++|. +++..+..+.. ++
T Consensus 384 ~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~ 463 (592)
T 3ogk_B 384 AVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP 463 (592)
T ss_dssp EEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCT
T ss_pred EeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCc
Confidence 99999998776666665 8999999997 5667652 34446779999999998654 77665555554 89
Q ss_pred CCCeeeCccCccccc-ChhhhhcCcCCCeeeCcCCcCccc-cCccCCCCCCCCEEeCCCCcCccccCccC-CCCCCee
Q 038187 479 RLRALSLSNNLLSGS-IPSEIGKLKELYYLDLSQNFINGK-IPSQLGEIPSIDTVNLCTNNLYGSIPESL-RKVPSLC 553 (560)
Q Consensus 479 ~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~ls~n~l~~~ip~~~-~~l~~l~ 553 (560)
+|++|++++|++++. ++..+..+++|++|++++|++++. ++.....+++|+.|++++|++++.-...+ ..+..++
T Consensus 464 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~ 541 (592)
T 3ogk_B 464 NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWN 541 (592)
T ss_dssp TCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEE
T ss_pred cceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcE
Confidence 999999999999874 456668899999999999998866 44445678999999999999987633332 2445554
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=7.7e-30 Score=256.15 Aligned_cols=255 Identities=18% Similarity=0.182 Sum_probs=191.2
Q ss_pred CCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEc
Q 038187 118 RNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDL 197 (560)
Q Consensus 118 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 197 (560)
++|++|++++|.+++..+..+.++++|++|++++|.+++..|..|+++++|++|++++|.+++..+..+.++++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 48999999999999877778999999999999999999888888999999999999999998655555889999999999
Q ss_pred ccCCCCccCc-cccCCCCCCCEEeCCCCc-ccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCCc
Q 038187 198 SRNEIGGSIP-STLGHLKRLRSLDLSLNE-LVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLE 275 (560)
Q Consensus 198 ~~n~~~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~ 275 (560)
++|.+++..+ ..+..+++|++|++++|. +.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 9999985433 478889999999999984 66666778889999999999999998888888889999999999998886
Q ss_pred CCccccccCCCCCCEEECcCCCCccccCcccC---CCCCCCEEEccCCcCcc----cCCccccCCCCCCEEEccCCcccc
Q 038187 276 GPIPSTIANLVNLTSLFLCNNSQTGFIPSTLG---HLNRLTSLDLSGNNLVG----PIPSSMGHLARLTTFDMHSNRING 348 (560)
Q Consensus 276 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~---~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~l~~ 348 (560)
...+..+..+++|+.|++++|.+++..+..+. ..+.++.++++++.+.+ .+|..+..+++|++|++++|+++
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~- 290 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK- 290 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-
Confidence 43333344578888888888888765444332 34556666666665544 23444555556666666666555
Q ss_pred cCCcC-ccCCCCCCEEEeecCcCcCC
Q 038187 349 SIPLE-IGNFNFLQVLDLSYNKLEGP 373 (560)
Q Consensus 349 ~~~~~-~~~l~~L~~L~l~~n~~~~~ 373 (560)
.+|.. +..+++|++|++++|.+.+.
T Consensus 291 ~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 291 SVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 33333 35555555555555555543
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.4e-29 Score=249.08 Aligned_cols=246 Identities=23% Similarity=0.223 Sum_probs=125.4
Q ss_pred EEEeecCcCCccCcccccCCCCCCEEECcCCCCcCCccccccCCCCCCEEECcCCCCccc--cCcccCCCCCCCEEEccC
Q 038187 242 FFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGF--IPSTLGHLNRLTSLDLSG 319 (560)
Q Consensus 242 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~l~~ 319 (560)
.++++++.++ .+|..+ .+++++|++++|.+....+..+.++++|++|++++|.++.. .+..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 4555555554 334332 24566666666666533333355566666666666655422 233344455666666666
Q ss_pred CcCcccCCccccCCCCCCEEEccCCcccccCC-cCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccc-c
Q 038187 320 NNLVGPIPSSMGHLARLTTFDMHSNRINGSIP-LEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTG-F 397 (560)
Q Consensus 320 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~-~ 397 (560)
|.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .
T Consensus 88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 5554 234445555555555555555553332 344555555555555555554444455555555555555555544 3
Q ss_pred CcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcC
Q 038187 398 IPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNC 477 (560)
Q Consensus 398 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~ 477 (560)
.|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..+
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence 44444555555555555555554444445555555555555555544434344444555555555555554444444444
Q ss_pred C-CCCeeeCccCccc
Q 038187 478 S-RLRALSLSNNLLS 491 (560)
Q Consensus 478 ~-~L~~L~Ls~n~l~ 491 (560)
+ +|++|++++|+++
T Consensus 247 ~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 247 PSSLAFLNLTQNDFA 261 (306)
T ss_dssp CTTCCEEECTTCCEE
T ss_pred hccCCEEEccCCCee
Confidence 2 4555555555444
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.7e-29 Score=252.20 Aligned_cols=282 Identities=20% Similarity=0.220 Sum_probs=158.4
Q ss_pred CCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCCcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEE
Q 038187 237 LTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLD 316 (560)
Q Consensus 237 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 316 (560)
|+.....+++++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|+
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 444455566666665 4444433 3666666666666654444566666666666666666665555666666666666
Q ss_pred ccCCcCcccCCccccCCCCCCEEEccCCcccccCC-cCccCCCCCCEEEeecCc-CcCCCchhccCCCCCCEEeccCCcc
Q 038187 317 LSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIP-LEIGNFNFLQVLDLSYNK-LEGPIPSTIASLVNLTSLFLCNNSQ 394 (560)
Q Consensus 317 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~L~l~~n~l 394 (560)
+++|.+++..+..++.+++|++|++++|.+.+..+ ..+..+++|++|++++|. +.+..+..+..+++|++|++++|.+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 66666654333335666666666666666653222 245556666666666652 4444444555555555555555555
Q ss_pred cccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhh
Q 038187 395 TGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQL 474 (560)
Q Consensus 395 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 474 (560)
++..|..+..+++|++|++++|++....+..+..+++|++|++++|++++..+..+. ..
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~---------------------~~ 245 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS---------------------TG 245 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------------
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc---------------------cc
Confidence 555555555555555555555555422222223345555555555555433222111 01
Q ss_pred hcCCCCCeeeCccCcccc----cChhhhhcCcCCCeeeCcCCcCccccCcc-CCCCCCCCEEeCCCCcCccccC
Q 038187 475 LNCSRLRALSLSNNLLSG----SIPSEIGKLKELYYLDLSQNFINGKIPSQ-LGEIPSIDTVNLCTNNLYGSIP 543 (560)
Q Consensus 475 ~~~~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~ls~n~l~~~ip 543 (560)
.....++.++++++.+++ .+|..+..+++|+.|++++|+++ .+|.. |..+++|+.|++++|++.+..|
T Consensus 246 ~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp -CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 223445555565555554 35666677777777777777777 45544 4677777777777777776655
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=6.4e-29 Score=246.21 Aligned_cols=225 Identities=22% Similarity=0.307 Sum_probs=140.1
Q ss_pred CCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEec
Q 038187 310 NRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFL 389 (560)
Q Consensus 310 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l 389 (560)
++++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 34444444444444 34444444445555555555444 44444444555555555555544 44444455555555555
Q ss_pred cCCcccccCcccc---------cCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeee
Q 038187 390 CNNSQTGFIPSTL---------GHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVY 460 (560)
Q Consensus 390 ~~n~l~~~~~~~~---------~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 460 (560)
++|++.+.+|..+ ..+++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..+..+++|++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEE
Confidence 5554444444433 33677777777777776 66666777777777777777776 3555667777777777
Q ss_pred cccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCccccCccCCCCCCCCEEeCCCCcCc
Q 038187 461 LFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLY 539 (560)
Q Consensus 461 l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~ 539 (560)
+++|.+.+.+|..+..+++|++|++++|++.+.+|..+.++++|+.|++++|++.+.+|..+.++++|+.+++..+.+.
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 7777777777777777777777777777777777777777777777777777777777777777777777777655443
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.6e-28 Score=241.39 Aligned_cols=261 Identities=23% Similarity=0.216 Sum_probs=123.6
Q ss_pred CCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCcc--CcccccCCCCCCEEECcCCCCcCCccccccCCCCCCEEE
Q 038187 215 RLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGS--IPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLF 292 (560)
Q Consensus 215 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 292 (560)
+|++|++++|.++...+..+.++++|++|++++|.++.. .+..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEE
Confidence 444444444444432223344444555555544444421 1333444555555555555544 2344445555555555
Q ss_pred CcCCCCccccC-cccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccc-cCCcCccCCCCCCEEEeecCcC
Q 038187 293 LCNNSQTGFIP-STLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRING-SIPLEIGNFNFLQVLDLSYNKL 370 (560)
Q Consensus 293 l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~ 370 (560)
+++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence 55555544332 344455555555555555554444445555555555555555543 2344444444444444444444
Q ss_pred cCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccc
Q 038187 371 EGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEI 450 (560)
Q Consensus 371 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~ 450 (560)
.+..|..+..+++|++ |++++|++++..+..+..+++|++|++++|++++..+..+
T Consensus 188 ~~~~~~~~~~l~~L~~------------------------L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 188 EQLSPTAFNSLSSLQV------------------------LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp CEECTTTTTTCTTCCE------------------------EECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred CCcCHHHhcCCCCCCE------------------------EECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 4443444444444444 4444444443333334444444444444444444444444
Q ss_pred cCCC-CCCeeecccCcccccC--chhhhcCCCCCeeeCccCcccccChhhhhc
Q 038187 451 GNLK-HVEDVYLFNNKLDGPI--PPQLLNCSRLRALSLSNNLLSGSIPSEIGK 500 (560)
Q Consensus 451 ~~l~-~L~~L~l~~n~l~~~~--~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~ 500 (560)
..++ +|++|++++|++++.. ......+...+.+.+..+.+....|..+.+
T Consensus 244 ~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp CCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred HhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence 4442 4555555555554321 111222334445555566666666665554
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.3e-27 Score=248.06 Aligned_cols=228 Identities=25% Similarity=0.255 Sum_probs=174.3
Q ss_pred CCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEc
Q 038187 118 RNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDL 197 (560)
Q Consensus 118 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 197 (560)
+++++|++++|.+++..+..|.++++|++|+|++|.+.+..+..|.++++|++|+|++|.+++..+..+.++++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 57899999999998888888999999999999999988888888888999999999999888766667888889999999
Q ss_pred ccCCCCccCccccCCCCCCCEEeCCCCc-ccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCCcC
Q 038187 198 SRNEIGGSIPSTLGHLKRLRSLDLSLNE-LVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEG 276 (560)
Q Consensus 198 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 276 (560)
++|.++...+..+..+++|++|++++|. +....+..|..+++|++|++++|.+++. | .+..+++|++|++++|.+.+
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcc
Confidence 9988886666678888888888888854 4433344677778888888888877643 3 46667777777777777776
Q ss_pred CccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCccc
Q 038187 277 PIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRIN 347 (560)
Q Consensus 277 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 347 (560)
..|..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|++++..+..+..+++|++|++++|.+.
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 66666777777777777777777666666677777777777777776555555666666777777666654
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=5.2e-28 Score=235.26 Aligned_cols=238 Identities=23% Similarity=0.252 Sum_probs=138.5
Q ss_pred CCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCc-ccccCCcCccCCCCCCEEE
Q 038187 286 VNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNR-INGSIPLEIGNFNFLQVLD 364 (560)
Q Consensus 286 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 364 (560)
++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|. +....+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 355555555555555444555555555555555555555445555555556666665554 4433345555556666666
Q ss_pred eecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcc
Q 038187 365 LSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRING 444 (560)
Q Consensus 365 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 444 (560)
+++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 66666655555555566666666666666655544455666666666666666665444456666666666666666666
Q ss_pred cCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCccccCccCCC
Q 038187 445 SIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFINGKIPSQLGE 524 (560)
Q Consensus 445 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 524 (560)
..|..+..+++|++|++++|++++..+..+..+++|++|++++|++....+.. .....++.+..+.+.+.+..|+.+..
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCC
Confidence 66666666666666666666666655555666666777777776666432211 11123344445566666666665543
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=4.1e-27 Score=243.50 Aligned_cols=228 Identities=25% Similarity=0.292 Sum_probs=158.5
Q ss_pred CCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEc
Q 038187 118 RNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDL 197 (560)
Q Consensus 118 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 197 (560)
+++++|++++|.+++..+..|.++++|++|+|++|.+.+..+..|.++++|++|+|++|.++...+..+.++++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 57888888888888877788888888888888888888777777888888888888888887665567788888888888
Q ss_pred ccCCCCccCccccCCCCCCCEEeCCCCc-ccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCCcC
Q 038187 198 SRNEIGGSIPSTLGHLKRLRSLDLSLNE-LVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEG 276 (560)
Q Consensus 198 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 276 (560)
++|.++...+..+..+++|++|++++|. +....+..|.++++|++|++++|.++ .+| .+..+++|++|++++|.+++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCc
Confidence 8888876666677778888888887744 33333345667777777777777766 333 35566666666666666665
Q ss_pred CccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCccc
Q 038187 277 PIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRIN 347 (560)
Q Consensus 277 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 347 (560)
..|..+..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 55556666666666666666666555555666666666666666665544445555566666666655554
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.5e-27 Score=231.96 Aligned_cols=250 Identities=24% Similarity=0.226 Sum_probs=154.4
Q ss_pred CCCCEEECcCCCCcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCc-CcccCCccccCCCCCCEEE
Q 038187 262 NFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNN-LVGPIPSSMGHLARLTTFD 340 (560)
Q Consensus 262 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~ 340 (560)
++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|. +.+..+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 455555555555554444445555556666665555555555555556666666666665 4444455556666666666
Q ss_pred ccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccc
Q 038187 341 MHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVG 420 (560)
Q Consensus 341 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 420 (560)
+++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 66666665555556666666666666666665555556666677777777776665555556667777777777777776
Q ss_pred cCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhc
Q 038187 421 PIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGK 500 (560)
Q Consensus 421 ~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~ 500 (560)
..|..+..+++|++|++++|++++..+..+..+++|++|++++|++....+.. .....++.+..+.+.+....|..+..
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCC
Confidence 66777777777777777777777555555677777777777777776433221 11233555667777777777776654
Q ss_pred --CcCCCeeeCcCC
Q 038187 501 --LKELYYLDLSQN 512 (560)
Q Consensus 501 --l~~L~~L~L~~n 512 (560)
+..++..++.+|
T Consensus 271 ~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 271 RDLKRLAANDLQGC 284 (285)
T ss_dssp CBGGGSCGGGSCCC
T ss_pred cChhhcCHHHhccC
Confidence 344555455544
No 61
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=1.1e-31 Score=288.97 Aligned_cols=420 Identities=14% Similarity=0.128 Sum_probs=261.9
Q ss_pred cCCCCCccEEECcCCCCC-Cc--Cc------------cccCCCCCCCEEECCCCCCCCCCCcCCC-CCCCCCEEeCcCC-
Q 038187 114 MGRLRNLVHLDLSDNYIE-GY--IL------------PTLGHLSKLENLNLSSNALDGNIPSTLG-HLTRLTTLAIASN- 176 (560)
Q Consensus 114 l~~l~~L~~L~L~~n~l~-~~--~~------------~~l~~l~~L~~L~L~~n~~~~~~~~~~~-~l~~L~~L~L~~n- 176 (560)
+.++++|++|+++++... +. .+ .....+++|++|++++|.+++..+..+. .+++|++|++++|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 456678888888887421 11 11 1234678888888888887766555554 5788888888888
Q ss_pred cCCcC-CcccCCCCCCCCEEEcccCCCCccCcccc----CCCCCCCEEeCCCCc--ccc-cCCccccCCCCCCEEEeecC
Q 038187 177 QINSS-IPLEIENLNFLQVLDLSRNEIGGSIPSTL----GHLKRLRSLDLSLNE--LVG-PIPSSLGHLTELTFFNIYSN 248 (560)
Q Consensus 177 ~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l----~~l~~L~~L~L~~n~--l~~-~~~~~l~~l~~L~~L~l~~n 248 (560)
.+... ++..+.++++|++|++++|.+++..+..+ ..+++|++|++++|. +.. .++..+..+++|++|++++|
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 34322 34444578888888888887765443333 366788888888876 221 11122345688888888887
Q ss_pred cCCccCcccccCCCCCCEEECcCCCC-------cCCccccccCCCCCCEE-ECcCCCCccccCcccCCCCCCCEEEccCC
Q 038187 249 RINGSIPLEIGNFNFLQVLDLSYNKL-------EGPIPSTIANLVNLTSL-FLCNNSQTGFIPSTLGHLNRLTSLDLSGN 320 (560)
Q Consensus 249 ~~~~~~~~~l~~l~~L~~L~L~~n~l-------~~~~~~~l~~l~~L~~L-~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 320 (560)
...+.++..+..+++|++|+++.+.. . .++..+.++++|+.+ .+.... .+.++..+..+++|++|++++|
T Consensus 222 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~ 299 (594)
T 2p1m_B 222 VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYA 299 (594)
T ss_dssp SCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTC
T ss_pred CcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCC
Confidence 33333666677788888888665432 2 233456777888887 333322 2234444446778888888888
Q ss_pred cCcccC-CccccCCCCCCEEEccCCccccc-CCcCccCCCCCCEEEeec---------CcCcCCCchhcc-CCCCCCEEe
Q 038187 321 NLVGPI-PSSMGHLARLTTFDMHSNRINGS-IPLEIGNFNFLQVLDLSY---------NKLEGPIPSTIA-SLVNLTSLF 388 (560)
Q Consensus 321 ~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~---------n~~~~~~~~~l~-~~~~L~~L~ 388 (560)
.+.+.. ...+..+++|++|++++| +... ++.....+++|++|++.+ +.+++.....+. .+++|++|.
T Consensus 300 ~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~ 378 (594)
T 2p1m_B 300 TVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVL 378 (594)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHH
Confidence 765432 223457788888888877 3322 222223477888888844 333332222232 477888887
Q ss_pred ccCCcccccCccccc-CCCCCCEEECc--C----Cccccc-----CCccccCCCCCCEEEccCCcCcccCCccccC-CCC
Q 038187 389 LCNNSQTGFIPSTLG-HLNRLTSLDLS--G----NNLVGP-----IPSSVGHLTQLTTFDMHSNRINGSIPLEIGN-LKH 455 (560)
Q Consensus 389 l~~n~l~~~~~~~~~-~~~~L~~L~L~--~----n~l~~~-----~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~ 455 (560)
+..+.+++.....+. .+++|+.|+++ + +.+++. ++..+..+++|++|++++ .+++..+..+.. +++
T Consensus 379 ~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~ 457 (594)
T 2p1m_B 379 YFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKK 457 (594)
T ss_dssp EEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTT
T ss_pred HhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchh
Confidence 777777765444443 47788888887 3 344421 122255677888888866 555544444443 677
Q ss_pred CCeeecccCcccccCchhh-hcCCCCCeeeCccCcccccChh-hhhcCcCCCeeeCcCCcCccccCccC-CCCCCCCEEe
Q 038187 456 VEDVYLFNNKLDGPIPPQL-LNCSRLRALSLSNNLLSGSIPS-EIGKLKELYYLDLSQNFINGKIPSQL-GEIPSIDTVN 532 (560)
Q Consensus 456 L~~L~l~~n~l~~~~~~~l-~~~~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~ 532 (560)
|++|++++|.+++..+..+ ..+++|++|++++|.+++..+. .+..+++|+.|++++|+++......+ ..+++++...
T Consensus 458 L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~ 537 (594)
T 2p1m_B 458 MEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEV 537 (594)
T ss_dssp CCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEE
T ss_pred ccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 8888888888776545444 6678888888888888655444 33457788888888888765433334 3456665555
Q ss_pred CCCCc
Q 038187 533 LCTNN 537 (560)
Q Consensus 533 ls~n~ 537 (560)
+..+.
T Consensus 538 ~~~~~ 542 (594)
T 2p1m_B 538 IDERG 542 (594)
T ss_dssp ECSSS
T ss_pred ecCCC
Confidence 55443
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=7.3e-27 Score=242.44 Aligned_cols=247 Identities=21% Similarity=0.220 Sum_probs=153.6
Q ss_pred CCEEECcCCCCcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccC
Q 038187 264 LQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHS 343 (560)
Q Consensus 264 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 343 (560)
.+.++.++..++ .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 455666666665 4555443 4677777777777776677777777777777777777766666677777777777777
Q ss_pred CcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCc-ccccCCCCCCEEECcCCcccccC
Q 038187 344 NRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIP-STLGHLNRLTSLDLSGNNLVGPI 422 (560)
Q Consensus 344 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~ 422 (560)
|.+++..+..+..+++|++|++++|.+....+..+..+++|++|++++|+..+.++ ..+..+++|++|++++|++++ +
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~ 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-M 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-C
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-c
Confidence 77775555556667777777777777665555566666677777776643333333 345566666666666666653 2
Q ss_pred CccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCc
Q 038187 423 PSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLK 502 (560)
Q Consensus 423 p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~ 502 (560)
| .+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|+.|+|++|++++..+..+..++
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 3 345556666666666666655555555666666666666666555555555556666666666666544444455555
Q ss_pred CCCeeeCcCCcCc
Q 038187 503 ELYYLDLSQNFIN 515 (560)
Q Consensus 503 ~L~~L~L~~n~l~ 515 (560)
+|+.|++++|++.
T Consensus 291 ~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 291 YLVELHLHHNPWN 303 (452)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEccCCCcC
Confidence 5666666655543
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=7.6e-27 Score=241.47 Aligned_cols=247 Identities=22% Similarity=0.243 Sum_probs=187.8
Q ss_pred CCEEECcCCCCcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccC
Q 038187 264 LQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHS 343 (560)
Q Consensus 264 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 343 (560)
.+.++..+..++ .+|..+. ++++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 456777777776 5666554 5788888888888887778888888888888888888877667788888888888888
Q ss_pred CcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCc-ccccCCCCCCEEECcCCcccccC
Q 038187 344 NRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIP-STLGHLNRLTSLDLSGNNLVGPI 422 (560)
Q Consensus 344 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~ 422 (560)
|.+++..+..+..+++|++|++++|.+....+..+..+++|++|++++|+..+.++ ..+..+++|++|++++|+++ .+
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~ 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EI 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cc
Confidence 88886555677888888888888888876666677788888888888754444333 35777788888888888777 44
Q ss_pred CccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCc
Q 038187 423 PSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLK 502 (560)
Q Consensus 423 p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~ 502 (560)
| .+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|+|++|++++..+..+..++
T Consensus 201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 5 366777788888888877777777777777777777777777777777777777777777777777766666667777
Q ss_pred CCCeeeCcCCcCc
Q 038187 503 ELYYLDLSQNFIN 515 (560)
Q Consensus 503 ~L~~L~L~~n~l~ 515 (560)
+|+.|+|++|++.
T Consensus 280 ~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 280 HLERIHLHHNPWN 292 (440)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEcCCCCcc
Confidence 7777777777764
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=2.9e-31 Score=285.75 Aligned_cols=414 Identities=14% Similarity=0.109 Sum_probs=297.4
Q ss_pred cccCCCCCCCEEECCCCCCCC---CCCcC------------CCCCCCCCEEeCcCCcCCcCCcccCC-CCCCCCEEEccc
Q 038187 136 PTLGHLSKLENLNLSSNALDG---NIPST------------LGHLTRLTTLAIASNQINSSIPLEIE-NLNFLQVLDLSR 199 (560)
Q Consensus 136 ~~l~~l~~L~~L~L~~n~~~~---~~~~~------------~~~l~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~l~~ 199 (560)
..+..+++|++|+++++.... ..|.. ...+++|++|++++|.+++..+..+. .+++|++|++++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS 139 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence 346778999999999975321 12222 23578999999999998876666664 689999999999
Q ss_pred C-CCCcc-CccccCCCCCCCEEeCCCCcccccCCccc----cCCCCCCEEEeecCc--CCcc-CcccccCCCCCCEEECc
Q 038187 200 N-EIGGS-IPSTLGHLKRLRSLDLSLNELVGPIPSSL----GHLTELTFFNIYSNR--INGS-IPLEIGNFNFLQVLDLS 270 (560)
Q Consensus 200 n-~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~l~~n~--~~~~-~~~~l~~l~~L~~L~L~ 270 (560)
| .++.. ++..+.++++|++|++++|.+++..+..+ ..+++|++|++++|. +... +...+..+++|++|+++
T Consensus 140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC
T ss_pred cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC
Confidence 8 44432 34444579999999999999876554444 367899999999986 2211 12223457999999999
Q ss_pred CCCCcCCccccccCCCCCCEEECcCCC-------CccccCcccCCCCCCCEE-EccCCcCcccCCccccCCCCCCEEEcc
Q 038187 271 YNKLEGPIPSTIANLVNLTSLFLCNNS-------QTGFIPSTLGHLNRLTSL-DLSGNNLVGPIPSSMGHLARLTTFDMH 342 (560)
Q Consensus 271 ~n~l~~~~~~~l~~l~~L~~L~l~~n~-------~~~~~~~~l~~l~~L~~L-~l~~n~~~~~~~~~~~~l~~L~~L~l~ 342 (560)
+|...+.++..+..+++|++|++..+. +.+ ++..+..+++|+.+ .+.+... +.++..+..+++|++|+++
T Consensus 220 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~ 297 (594)
T 2p1m_B 220 RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLS 297 (594)
T ss_dssp TTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECT
T ss_pred CCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEcc
Confidence 984333477778889999999976653 222 33467889999999 4444332 3455555678999999999
Q ss_pred CCcccccCC-cCccCCCCCCEEEeecCcCcCC-CchhccCCCCCCEEeccC---------CcccccCcccc-cCCCCCCE
Q 038187 343 SNRINGSIP-LEIGNFNFLQVLDLSYNKLEGP-IPSTIASLVNLTSLFLCN---------NSQTGFIPSTL-GHLNRLTS 410 (560)
Q Consensus 343 ~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~---------n~l~~~~~~~~-~~~~~L~~ 410 (560)
+|.+++... ..+..+++|++|++++| +.+. ++.....+++|++|++.+ +.+++.....+ ..+++|+.
T Consensus 298 ~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~ 376 (594)
T 2p1m_B 298 YATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES 376 (594)
T ss_dssp TCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCE
T ss_pred CCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHH
Confidence 999775432 23567899999999998 4322 223334589999999944 34544333333 34899999
Q ss_pred EECcCCcccccCCcccc-CCCCCCEEEcc--C----CcCcc-----cCCccccCCCCCCeeecccCcccccCchhhhc-C
Q 038187 411 LDLSGNNLVGPIPSSVG-HLTQLTTFDMH--S----NRING-----SIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLN-C 477 (560)
Q Consensus 411 L~L~~n~l~~~~p~~~~-~l~~L~~L~l~--~----n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~-~ 477 (560)
|.+..+.+++..+..+. .+++|++|+++ + +.+++ .++..+..+++|++|++++ .+++..+..+.. +
T Consensus 377 L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~ 455 (594)
T 2p1m_B 377 VLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYA 455 (594)
T ss_dssp EEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHC
T ss_pred HHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhc
Confidence 99988888866555554 58999999999 4 45552 2223366789999999987 777666666665 8
Q ss_pred CCCCeeeCccCcccccChhhh-hcCcCCCeeeCcCCcCccccCc-cCCCCCCCCEEeCCCCcCccccCccC-CCCCCee
Q 038187 478 SRLRALSLSNNLLSGSIPSEI-GKLKELYYLDLSQNFINGKIPS-QLGEIPSIDTVNLCTNNLYGSIPESL-RKVPSLC 553 (560)
Q Consensus 478 ~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~ls~n~l~~~ip~~~-~~l~~l~ 553 (560)
++|+.|++++|.+++..+..+ ..+++|+.|++++|++++..+. ....+++|+.|++++|+++......+ ..+..+.
T Consensus 456 ~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~ 534 (594)
T 2p1m_B 456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLN 534 (594)
T ss_dssp TTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEE
T ss_pred hhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCE
Confidence 999999999999988766666 6799999999999999766544 44558999999999999975544434 3444443
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=5.5e-29 Score=245.25 Aligned_cols=202 Identities=26% Similarity=0.277 Sum_probs=98.5
Q ss_pred CCCCCEEEcccCCCCccCcccc--CCCCCCCEEeCCCCcccccCCccccCC-----CCCCEEEeecCcCCccCcccccCC
Q 038187 189 LNFLQVLDLSRNEIGGSIPSTL--GHLKRLRSLDLSLNELVGPIPSSLGHL-----TELTFFNIYSNRINGSIPLEIGNF 261 (560)
Q Consensus 189 l~~L~~L~l~~n~~~~~~~~~l--~~l~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~~l~~l 261 (560)
+++|++|++++|.+++.+|..+ ..+++|++|++++|++++. |..++.+ ++|++|++++|++.+..+..++.+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4444444444444444444433 4444444444444444433 3333333 445555555555544444444455
Q ss_pred CCCCEEECcCCCCcCC--ccccc--cCCCCCCEEECcCCCCcc---ccCcccCCCCCCCEEEccCCcCcccCC-ccccCC
Q 038187 262 NFLQVLDLSYNKLEGP--IPSTI--ANLVNLTSLFLCNNSQTG---FIPSTLGHLNRLTSLDLSGNNLVGPIP-SSMGHL 333 (560)
Q Consensus 262 ~~L~~L~L~~n~l~~~--~~~~l--~~l~~L~~L~l~~n~~~~---~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l 333 (560)
++|++|++++|++.+. .+..+ ..+++|++|++++|.+++ .....+..+++|++|++++|.+.+..| ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 5555555555544332 12222 444555555555555542 111222344555555555555554432 233445
Q ss_pred CCCCEEEccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccc
Q 038187 334 ARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTG 396 (560)
Q Consensus 334 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~ 396 (560)
++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 56666666666655 4454443 5566666666666544 33 5556666666666666553
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=3.2e-29 Score=246.90 Aligned_cols=203 Identities=21% Similarity=0.280 Sum_probs=123.3
Q ss_pred CCCCCCEEEccCCcccccCCcCc--cCCCCCCEEEeecCcCcCCCchhccCC-----CCCCEEeccCCcccccCcccccC
Q 038187 332 HLARLTTFDMHSNRINGSIPLEI--GNFNFLQVLDLSYNKLEGPIPSTIASL-----VNLTSLFLCNNSQTGFIPSTLGH 404 (560)
Q Consensus 332 ~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~l~~~-----~~L~~L~l~~n~l~~~~~~~~~~ 404 (560)
++++|++|++++|.+++.+|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++++..+..+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 44555555555555555555443 4555555555555555544 4444433 56666666666666555555666
Q ss_pred CCCCCEEECcCCccccc--CCccc--cCCCCCCEEEccCCcCcc--cCC-ccccCCCCCCeeecccCcccccCc-hhhhc
Q 038187 405 LNRLTSLDLSGNNLVGP--IPSSV--GHLTQLTTFDMHSNRING--SIP-LEIGNLKHVEDVYLFNNKLDGPIP-PQLLN 476 (560)
Q Consensus 405 ~~~L~~L~L~~n~l~~~--~p~~~--~~l~~L~~L~l~~n~l~~--~~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~ 476 (560)
+++|++|++++|++.+. .|..+ ..+++|++|++++|++++ .++ ..+..+++|++|++++|++++.+| ..+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 66666666666665443 22222 556666666666666652 111 223455667777777777766553 34455
Q ss_pred CCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCccccCccCCCCCCCCEEeCCCCcCcc
Q 038187 477 CSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLYG 540 (560)
Q Consensus 477 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~ 540 (560)
+++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus 252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 677777777777777 6666665 6777777777777754 55 7777778888888887775
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=5.8e-26 Score=218.81 Aligned_cols=217 Identities=24% Similarity=0.306 Sum_probs=116.7
Q ss_pred CCCccccceecCCCCCeEEEeccccCCCCceeecCCCCccccccccccCCCCCccEEECcCCCCCCcCccccCCCCCCCE
Q 038187 67 SNHCKWTGISCNSAGSVTGVSLLLYENDNIKGELGRFNFSCFPNLKKMGRLRNLVHLDLSDNYIEGYILPTLGHLSKLEN 146 (560)
Q Consensus 67 ~~~C~w~gv~C~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 146 (560)
.++|.|.|+.|...+.++.++++ +..+.. +|. . + .+++++|++++|.+++..+..|.++++|++
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~---~~~l~~-ip~-~---------~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~ 65 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCS---SKKLTA-IPS-N---------I--PADTKKLDLQSNKLSSLPSKAFHRLTKLRL 65 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECT---TSCCSS-CCS-C---------C--CTTCSEEECCSSCCSCCCTTSSSSCTTCCE
T ss_pred CccCCCCCCCCEeCCCCCEEEcc---CCCCCc-cCC-C---------C--CCCCCEEECcCCCCCeeCHHHhcCCCCCCE
Confidence 58999999999755555666665 333331 221 0 1 135566666666665555555666666666
Q ss_pred EECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEcccCCCCccCccccCCCCCCCEEeCCCCcc
Q 038187 147 LNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNEL 226 (560)
Q Consensus 147 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l 226 (560)
|++++|.+++..+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 66 L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 145 (270)
T 2o6q_A 66 LYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145 (270)
T ss_dssp EECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcC
Confidence 66666655544444445555566666665555544444445555555555555555544444455555555555555555
Q ss_pred cccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCCcCCccccccCCCCCCEEECcCCCCccccCccc
Q 038187 227 VGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTL 306 (560)
Q Consensus 227 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l 306 (560)
++..+..+..+++|++|++++|. +++..+..+..+++|+.|++++|.+++..+..+
T Consensus 146 ~~~~~~~~~~l~~L~~L~L~~n~------------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 201 (270)
T 2o6q_A 146 QSLPKGVFDKLTSLKELRLYNNQ------------------------LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF 201 (270)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC------------------------CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CccCHhHccCCcccceeEecCCc------------------------CcEeChhHhccCCCcCEEECCCCcCCcCCHHHh
Confidence 54433344444555555554444 444333344445555555555555554444445
Q ss_pred CCCCCCCEEEccCCcCc
Q 038187 307 GHLNRLTSLDLSGNNLV 323 (560)
Q Consensus 307 ~~l~~L~~L~l~~n~~~ 323 (560)
..+++|+.|++++|.+.
T Consensus 202 ~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 202 DSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTCTTCCEEECCSSCBC
T ss_pred ccccCCCEEEecCCCee
Confidence 55555555555555543
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=3.1e-28 Score=240.48 Aligned_cols=246 Identities=21% Similarity=0.123 Sum_probs=137.2
Q ss_pred CCCCCEEECcCCCCcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEE
Q 038187 261 FNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFD 340 (560)
Q Consensus 261 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 340 (560)
+++|++|++++|.+++..|..+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. ...++|++|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTTCCEEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCCcCEEE
Confidence 3344444444444444433444444444444444444443322 44455555555555554421 1224555555
Q ss_pred ccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccc-cCCCCCCEEECcCCccc
Q 038187 341 MHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTL-GHLNRLTSLDLSGNNLV 419 (560)
Q Consensus 341 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~L~~n~l~ 419 (560)
+++|.+++..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|+++
T Consensus 106 l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp CCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 555555533222 24556666666666655545555556666666666666665544444 24566666666666665
Q ss_pred ccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCccc-ccChhhh
Q 038187 420 GPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLS-GSIPSEI 498 (560)
Q Consensus 420 ~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~-~~~p~~l 498 (560)
+. + ....+++|++|++++|++++ +|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|+++ +.+|.++
T Consensus 183 ~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 183 DV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp EE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred cc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence 43 2 22236667777777776663 3444666677777777777776 35556666777777777777776 5666677
Q ss_pred hcCcCCCeeeCcCC-cCccccCc
Q 038187 499 GKLKELYYLDLSQN-FINGKIPS 520 (560)
Q Consensus 499 ~~l~~L~~L~L~~n-~l~~~~p~ 520 (560)
..+++|+.+++++| .+.|..|.
T Consensus 259 ~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 259 SKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp HTCHHHHHHHHHHHHHHHSSSSC
T ss_pred hccccceEEECCCchhccCCchh
Confidence 77777777777643 45554443
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=6.7e-26 Score=241.47 Aligned_cols=268 Identities=24% Similarity=0.299 Sum_probs=205.0
Q ss_pred CCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCCcCCccccccCCCCCCEEEC
Q 038187 214 KRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFL 293 (560)
Q Consensus 214 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 293 (560)
.++++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|+++ .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 36899999999988 6676665 78999999999988 4555 5788999999999987 4554 6788999999
Q ss_pred cCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCccCCCCCCEEEeecCcCcCC
Q 038187 294 CNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGP 373 (560)
Q Consensus 294 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 373 (560)
++|.+++. |. .+++|+.|++++|.+++ +|.. +++|++|++++|.+++ +|. .+++|+.|++++|.+++
T Consensus 109 s~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~- 175 (622)
T 3g06_A 109 FSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS- 175 (622)
T ss_dssp CSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-
T ss_pred cCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-
Confidence 99988864 33 56789999999998874 5543 4889999999998874 443 34678888998888875
Q ss_pred CchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCC
Q 038187 374 IPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNL 453 (560)
Q Consensus 374 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 453 (560)
+| ..+++|+.|++++|.+++ +|. ..++|+.|++++|.++ .+|.. +++|++|++++|++++ +| ..+
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l 240 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLP 240 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCC
T ss_pred Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCC
Confidence 44 456888888888888875 333 2468888888888887 45542 4778888888888874 55 455
Q ss_pred CCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCccccCccCCCC
Q 038187 454 KHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFINGKIPSQLGEI 525 (560)
Q Consensus 454 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 525 (560)
++|++|++++|+++ .+|. .+++|+.|+|++|+++ .+|..+.++++|+.|+|++|++++.+|..+..+
T Consensus 241 ~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 241 SELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred CcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 77888888888887 4554 5678888888888888 678788888888888888888888777655543
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=5.7e-28 Score=238.57 Aligned_cols=264 Identities=20% Similarity=0.183 Sum_probs=175.5
Q ss_pred EeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCCcCCccccccCCCCCCEEECcCCCC
Q 038187 219 LDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQ 298 (560)
Q Consensus 219 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 298 (560)
.+++.+.+.......+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc
Confidence 3444444433333333444555555555555555545555556666666666666554332 55566666666666665
Q ss_pred ccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhc
Q 038187 299 TGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTI 378 (560)
Q Consensus 299 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l 378 (560)
++.. ..++|++|++++|.+.+..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+
T Consensus 93 ~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 164 (317)
T 3o53_A 93 QELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (317)
T ss_dssp EEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred cccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence 5332 225677777777766654332 35667777777777776656666777777888887777776655555
Q ss_pred -cCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCC
Q 038187 379 -ASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVE 457 (560)
Q Consensus 379 -~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 457 (560)
..+++|++|++++|.+++. + ....+++|++|++++|++++ +|..+..+++|++|++++|+++ .+|..+..+++|+
T Consensus 165 ~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~ 240 (317)
T 3o53_A 165 AASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240 (317)
T ss_dssp GGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCC
T ss_pred hhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCC
Confidence 3677888888888887765 2 23347888888888888874 4555778888888888888888 5677788888888
Q ss_pred eeecccCccc-ccCchhhhcCCCCCeeeCccC-cccccChh
Q 038187 458 DVYLFNNKLD-GPIPPQLLNCSRLRALSLSNN-LLSGSIPS 496 (560)
Q Consensus 458 ~L~l~~n~l~-~~~~~~l~~~~~L~~L~Ls~n-~l~~~~p~ 496 (560)
.|++++|++. +.+|..+..++.|+.++++++ .++|..|.
T Consensus 241 ~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp EEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred EEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 9999988888 677888888888888888854 55555443
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=8.1e-25 Score=233.12 Aligned_cols=134 Identities=29% Similarity=0.380 Sum_probs=85.9
Q ss_pred CCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEcccCCCCccCccccCCCCCCCEEeCC
Q 038187 143 KLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLS 222 (560)
Q Consensus 143 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~ 222 (560)
++++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 5889999999988 6777665 78999999999887 4554 5678888888888877 3444 56777777777
Q ss_pred CCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCCcCCccccccCCCCCCEEECcCCCCc
Q 038187 223 LNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQT 299 (560)
Q Consensus 223 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 299 (560)
+|.+++. |. .+++|+.|++++|++++ +|.. +++|++|++++|.+++ +|. .+++|+.|++++|.++
T Consensus 110 ~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 110 SNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT 174 (622)
T ss_dssp SCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred CCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC
Confidence 7777642 33 45566666666666553 3332 2455555555555542 222 1234444444444444
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=6.5e-27 Score=244.28 Aligned_cols=234 Identities=21% Similarity=0.203 Sum_probs=138.4
Q ss_pred CCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCccCCCCCCEEEe
Q 038187 286 VNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDL 365 (560)
Q Consensus 286 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 365 (560)
++|+.|++++|.+++..|..|..+++|++|++++|.+.+..| +..+++|++|++++|.+++.. ..++|++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEEC
Confidence 367777777777777666677777777777777777765544 667777777777777776432 1256666777
Q ss_pred ecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCcccc-CCCCCCEEEccCCcCcc
Q 038187 366 SYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVG-HLTQLTTFDMHSNRING 444 (560)
Q Consensus 366 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~ 444 (560)
++|.+.+..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|++|++++|.+++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 66666654332 345566666666666665555555666666666666666655555553 45666666666666654
Q ss_pred cCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCc-cccCccCC
Q 038187 445 SIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFIN-GKIPSQLG 523 (560)
Q Consensus 445 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~ 523 (560)
..+ ...+++|++|++++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|..+.
T Consensus 184 ~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 184 VKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred ccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 321 2235555555555555554322 35555555555555555553 4445555555555555555554 44455555
Q ss_pred CCCCCCEEeC
Q 038187 524 EIPSIDTVNL 533 (560)
Q Consensus 524 ~l~~L~~L~l 533 (560)
.++.|+.+++
T Consensus 260 ~l~~L~~l~~ 269 (487)
T 3oja_A 260 KNQRVQTVAK 269 (487)
T ss_dssp TCHHHHHHHH
T ss_pred hCCCCcEEec
Confidence 5555555544
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=8e-27 Score=243.58 Aligned_cols=237 Identities=22% Similarity=0.127 Sum_probs=199.2
Q ss_pred CCCCCCEEECcCCCCcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEE
Q 038187 260 NFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTF 339 (560)
Q Consensus 260 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 339 (560)
.+++|++|+|++|.+.+..|..+..+++|++|++++|.+++..| +..+++|++|++++|.+.+.. ..++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 34489999999999998778889999999999999999987665 888999999999999887432 23889999
Q ss_pred EccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCccccc-CCCCCCEEECcCCcc
Q 038187 340 DMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLG-HLNRLTSLDLSGNNL 418 (560)
Q Consensus 340 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~L~~n~l 418 (560)
++++|.+++..+. .+++|++|++++|.+.+..|..+..+++|+.|++++|.+++..|..+. .+++|+.|++++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 9999999865543 467899999999999988888888899999999999999988777775 789999999999998
Q ss_pred cccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCccc-ccChhh
Q 038187 419 VGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLS-GSIPSE 497 (560)
Q Consensus 419 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~-~~~p~~ 497 (560)
++..+ ...+++|++|++++|.+++ +|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|.+
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 182 YDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred ccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 86532 3458899999999999986 44458888999999999999985 6777888899999999999988 677888
Q ss_pred hhcCcCCCeeeCc
Q 038187 498 IGKLKELYYLDLS 510 (560)
Q Consensus 498 l~~l~~L~~L~L~ 510 (560)
+..++.|+.+++.
T Consensus 258 ~~~l~~L~~l~~~ 270 (487)
T 3oja_A 258 FSKNQRVQTVAKQ 270 (487)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HHhCCCCcEEecc
Confidence 8888888888886
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.2e-24 Score=210.38 Aligned_cols=208 Identities=24% Similarity=0.217 Sum_probs=107.2
Q ss_pred CCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEecc
Q 038187 311 RLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLC 390 (560)
Q Consensus 311 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 390 (560)
+|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+.
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------------- 94 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-------------- 94 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT--------------
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh--------------
Confidence 455555555555544443445555555555555555443333444445555555555544444444
Q ss_pred CCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCccc-CCccccCCCCCCeeecccCccccc
Q 038187 391 NNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGS-IPLEIGNLKHVEDVYLFNNKLDGP 469 (560)
Q Consensus 391 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~ 469 (560)
.+..+++|++|++++|++++..+..+..+++|++|++++|++.+. +|..+..+++|++|++++|++++.
T Consensus 95 ----------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 95 ----------AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp ----------TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred ----------hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 444445555555555554443333444555555555555555432 344555555555555555555544
Q ss_pred CchhhhcCCCCC----eeeCccCcccccChhhhhcCcCCCeeeCcCCcCccccCccCCCCCCCCEEeCCCCcCccccC
Q 038187 470 IPPQLLNCSRLR----ALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLYGSIP 543 (560)
Q Consensus 470 ~~~~l~~~~~L~----~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ip 543 (560)
.+..+..+++|+ +|++++|.+++..+..+ ...+|+.|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 444444444444 56666666664333333 23356666666666665444455666666666666666665443
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=2.2e-24 Score=208.48 Aligned_cols=205 Identities=23% Similarity=0.251 Sum_probs=132.9
Q ss_pred CCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEc
Q 038187 118 RNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDL 197 (560)
Q Consensus 118 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 197 (560)
+++++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 36788888888887776667788888888888888777666667777888888888888777666667777777777777
Q ss_pred ccCCCCccCccccCCCCCCCEEeCCCCccccc-CCccccCCCCCCEEEeecCcCCccCcccccCCCCCC----EEECcCC
Q 038187 198 SRNEIGGSIPSTLGHLKRLRSLDLSLNELVGP-IPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQ----VLDLSYN 272 (560)
Q Consensus 198 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~----~L~L~~n 272 (560)
++|.+++..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|++++..+..+..+++|+ +|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 77777765555677777777777777777653 466666677777777777766655555554444444 5555555
Q ss_pred CCcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCc
Q 038187 273 KLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLV 323 (560)
Q Consensus 273 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 323 (560)
.+.+..+..+ ...+|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 188 ~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 188 PMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred cccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 5553332222 2224555555555555444444444555555555555444
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=9.1e-25 Score=210.62 Aligned_cols=207 Identities=23% Similarity=0.248 Sum_probs=103.5
Q ss_pred CCCCCEEEccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEE
Q 038187 333 LARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLD 412 (560)
Q Consensus 333 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 412 (560)
+++|+.|++++|.+.. + ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 3444444444444331 1 1233444444444444444431 2344444555555555554444444444455555555
Q ss_pred CcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccc
Q 038187 413 LSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSG 492 (560)
Q Consensus 413 L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~ 492 (560)
+++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 55555554444444555555555555555554444444555555555555555554444445555555555555555555
Q ss_pred cChhhhhcCcCCCeeeCcCCcCccccCccCCCCCCCCEEeCCCCcCccccCccCCCCC
Q 038187 493 SIPSEIGKLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLYGSIPESLRKVP 550 (560)
Q Consensus 493 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ip~~~~~l~ 550 (560)
..+..+..+++|+.|++++|++.+. +++|+.++++.|+++|.||.+++++.
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred cCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 5454555555555555555555432 33455555555666666665555543
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=3.5e-24 Score=206.48 Aligned_cols=209 Identities=20% Similarity=0.261 Sum_probs=115.8
Q ss_pred CCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEcccCCCCccCccccCCCCCCCE
Q 038187 139 GHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRS 218 (560)
Q Consensus 139 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 218 (560)
..+++|++|++++|.+.. ...+..+++|++|++++|.+.+. ..+.++++|++|++++|.+++..+..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 344555555555554442 12344555555555555555431 24455555555555555555444444555555555
Q ss_pred EeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCCcCCccccccCCCCCCEEECcCCCC
Q 038187 219 LDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQ 298 (560)
Q Consensus 219 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 298 (560)
|++++|++++..+..++.+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 55555555544444555555555555555555544444455556666666666666554444455566666666666666
Q ss_pred ccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCccCCC
Q 038187 299 TGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFN 358 (560)
Q Consensus 299 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 358 (560)
++..+..+..+++|+.|++++|.+.+ .+++++.++++.|.++|.+|..++.++
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence 65555556666666666666665542 344566666666666666666655443
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=2e-23 Score=201.02 Aligned_cols=202 Identities=25% Similarity=0.319 Sum_probs=116.0
Q ss_pred CCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEecc
Q 038187 311 RLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLC 390 (560)
Q Consensus 311 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 390 (560)
+.+.++++++.++ .+|..+. +++++|++++|.+.+..+..+..+++|++|++++|.++...+..+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4566666666665 3444332 456666666666665444456666666666666666664444445556666666666
Q ss_pred CCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccC
Q 038187 391 NNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPI 470 (560)
Q Consensus 391 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 470 (560)
+|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 66666554445555666666666666665555555555666666666666665444444555556666666666655544
Q ss_pred chhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCc
Q 038187 471 PPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFIN 515 (560)
Q Consensus 471 ~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 515 (560)
+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 444555555666666666555444444555555555555555554
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=5.1e-23 Score=199.97 Aligned_cols=203 Identities=21% Similarity=0.165 Sum_probs=102.8
Q ss_pred cCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCC
Q 038187 306 LGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLT 385 (560)
Q Consensus 306 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 385 (560)
+..++++++++++++.++ .+|..+ .+++++|++++|.+++..+..+..+++|++|++++|.+++..+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 344555666666666555 334332 2455566666666555444555555555555555555553221 14455555
Q ss_pred EEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCc
Q 038187 386 SLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNK 465 (560)
Q Consensus 386 ~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 465 (560)
+|++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 5555555554 334444455555555555555554444445555555555555555554434444445555555555555
Q ss_pred ccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCc
Q 038187 466 LDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFIN 515 (560)
Q Consensus 466 l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 515 (560)
+++..+..+..+++|+.|++++|+++ .+|..+..+++|+.+++++|++.
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 55333333444555555555555555 34444444445555555555443
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=3.4e-25 Score=225.08 Aligned_cols=189 Identities=21% Similarity=0.218 Sum_probs=108.7
Q ss_pred cCCCCCCEEEeecCcCcC----CCchhccCCCCCCEEeccCCcccccCcccc----cCC---------CCCCEEECcCCc
Q 038187 355 GNFNFLQVLDLSYNKLEG----PIPSTIASLVNLTSLFLCNNSQTGFIPSTL----GHL---------NRLTSLDLSGNN 417 (560)
Q Consensus 355 ~~l~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~----~~~---------~~L~~L~L~~n~ 417 (560)
..+++|++|++++|.+.+ .++..+..+++|++|++++|.+++..+..+ ..+ ++|+.|++++|+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 345555555555555554 234445555555556665555543322222 222 566666666666
Q ss_pred cc-ccCC---ccccCCCCCCEEEccCCcCcc-----cCCccccCCCCCCeeecccCccc----ccCchhhhcCCCCCeee
Q 038187 418 LV-GPIP---SSVGHLTQLTTFDMHSNRING-----SIPLEIGNLKHVEDVYLFNNKLD----GPIPPQLLNCSRLRALS 484 (560)
Q Consensus 418 l~-~~~p---~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~l~~~~~L~~L~ 484 (560)
++ +.++ ..+..+++|++|++++|+++. .++..+..+++|++|++++|.++ +.+|..+..+++|++|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 65 2233 244456666666666666652 22335556666666666666664 44566666667777777
Q ss_pred CccCccccc----Chhhhhc--CcCCCeeeCcCCcCcc----ccCccC-CCCCCCCEEeCCCCcCccccC
Q 038187 485 LSNNLLSGS----IPSEIGK--LKELYYLDLSQNFING----KIPSQL-GEIPSIDTVNLCTNNLYGSIP 543 (560)
Q Consensus 485 Ls~n~l~~~----~p~~l~~--l~~L~~L~L~~n~l~~----~~p~~l-~~l~~L~~L~ls~n~l~~~ip 543 (560)
|++|.+++. ++..+.. +++|+.|+|++|++++ .+|..+ .++++|+.|++++|++++..|
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 777776654 4445532 6677777777777766 366555 446677777777777766553
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=6.6e-25 Score=220.78 Aligned_cols=257 Identities=23% Similarity=0.199 Sum_probs=153.6
Q ss_pred EEEeecCcCCccCcccccCCCCCCEEECcCCCCcCCcc----ccccCCC-CCCEEECcCCCCccccCcccCCC-----CC
Q 038187 242 FFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIP----STIANLV-NLTSLFLCNNSQTGFIPSTLGHL-----NR 311 (560)
Q Consensus 242 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l-----~~ 311 (560)
.+.++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35667777777777766666668888888877776555 5566666 77777777777776655555443 77
Q ss_pred CCEEEccCCcCcccCCcc----ccCC-CCCCEEEccCCcccccCCcCc----cC-CCCCCEEEeecCcCcCCCch----h
Q 038187 312 LTSLDLSGNNLVGPIPSS----MGHL-ARLTTFDMHSNRINGSIPLEI----GN-FNFLQVLDLSYNKLEGPIPS----T 377 (560)
Q Consensus 312 L~~L~l~~n~~~~~~~~~----~~~l-~~L~~L~l~~n~l~~~~~~~~----~~-l~~L~~L~l~~n~~~~~~~~----~ 377 (560)
|++|++++|.+.+..+.. +..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+.+..+. .
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 777777777776554442 2333 677777777777765443332 22 24677777777776654332 3
Q ss_pred ccCCC-CCCEEeccCCcccccCcccc----cCC-CCCCEEECcCCccccc----CCccccC-CCCCCEEEccCCcCcccC
Q 038187 378 IASLV-NLTSLFLCNNSQTGFIPSTL----GHL-NRLTSLDLSGNNLVGP----IPSSVGH-LTQLTTFDMHSNRINGSI 446 (560)
Q Consensus 378 l~~~~-~L~~L~l~~n~l~~~~~~~~----~~~-~~L~~L~L~~n~l~~~----~p~~~~~-l~~L~~L~l~~n~l~~~~ 446 (560)
+...+ +|++|++++|.+++..+..+ ..+ ++|+.|++++|++++. ++..+.. .++|++|++++|++++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 33444 67777777777665544332 333 4677777777766642 3333433 346777777777666433
Q ss_pred C----ccccCCCCCCeeecccCcccccCc-------hhhhcCCCCCeeeCccCcccccChhhh
Q 038187 447 P----LEIGNLKHVEDVYLFNNKLDGPIP-------PQLLNCSRLRALSLSNNLLSGSIPSEI 498 (560)
Q Consensus 447 ~----~~~~~l~~L~~L~l~~n~l~~~~~-------~~l~~~~~L~~L~Ls~n~l~~~~p~~l 498 (560)
+ ..+..+++|++|++++|.+.+..+ ..+..++.|+.||+++|++.+..+..+
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~ 304 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI 304 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence 2 223455666666666666433222 234455566666666666665544333
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=3.9e-25 Score=220.31 Aligned_cols=254 Identities=17% Similarity=0.179 Sum_probs=129.5
Q ss_pred CCCEEECcCCCCcCCccccccCC--CCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCccc-CCccccCCCCCCEE
Q 038187 263 FLQVLDLSYNKLEGPIPSTIANL--VNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGP-IPSSMGHLARLTTF 339 (560)
Q Consensus 263 ~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L 339 (560)
.++.++++++.+. +..+..+ ++++.+++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3566677666554 2333333 5666666666666555443 33456666666666665543 44455556666666
Q ss_pred EccCCcccccCCcCccCCCCCCEEEeecC-cCcCC-CchhccCCCCCCEEeccCC-ccccc-CcccccCCC-CCCEEECc
Q 038187 340 DMHSNRINGSIPLEIGNFNFLQVLDLSYN-KLEGP-IPSTIASLVNLTSLFLCNN-SQTGF-IPSTLGHLN-RLTSLDLS 414 (560)
Q Consensus 340 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~l~~~~~L~~L~l~~n-~l~~~-~~~~~~~~~-~L~~L~L~ 414 (560)
++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 66666655555555555666666666665 34432 3444555555666666555 55433 334445555 55555555
Q ss_pred CC--ccc-ccCCccccCCCCCCEEEccCCc-CcccCCccccCCCCCCeeecccCc-ccccCchhhhcCCCCCeeeCccCc
Q 038187 415 GN--NLV-GPIPSSVGHLTQLTTFDMHSNR-INGSIPLEIGNLKHVEDVYLFNNK-LDGPIPPQLLNCSRLRALSLSNNL 489 (560)
Q Consensus 415 ~n--~l~-~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~~~~L~~L~Ls~n~ 489 (560)
+| .++ +.+|..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 55 233 2334444455555555555555 444444445555555555555553 22211123444555555555555
Q ss_pred ccccChhhhhcCcCCCeeeCcCCcCccccCccCC
Q 038187 490 LSGSIPSEIGKLKELYYLDLSQNFINGKIPSQLG 523 (560)
Q Consensus 490 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 523 (560)
++......+. ..+..|++++|++++..|..++
T Consensus 283 i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 283 VPDGTLQLLK--EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred cCHHHHHHHH--hhCcceEEecccCccccCCccc
Confidence 3322111111 2244444555555555554443
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=8.1e-25 Score=220.14 Aligned_cols=255 Identities=20% Similarity=0.241 Sum_probs=168.1
Q ss_pred EEECcCCCCcCCccccccCCCCCCEEECcCCCCccccC----cccCCCC-CCCEEEccCCcCcccCCccccCC-----CC
Q 038187 266 VLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIP----STLGHLN-RLTSLDLSGNNLVGPIPSSMGHL-----AR 335 (560)
Q Consensus 266 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~----~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~l-----~~ 335 (560)
.+++++|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+.+..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35678888888777777666678888888888876655 5667777 78888888888876655555443 78
Q ss_pred CCEEEccCCcccccCCcC----ccCC-CCCCEEEeecCcCcCCCchhcc----C-CCCCCEEeccCCcccccCc----cc
Q 038187 336 LTTFDMHSNRINGSIPLE----IGNF-NFLQVLDLSYNKLEGPIPSTIA----S-LVNLTSLFLCNNSQTGFIP----ST 401 (560)
Q Consensus 336 L~~L~l~~n~l~~~~~~~----~~~l-~~L~~L~l~~n~~~~~~~~~l~----~-~~~L~~L~l~~n~l~~~~~----~~ 401 (560)
|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+. . .++|++|++++|.+++... ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 888888888887655443 3334 6788888888887766654432 3 3578888888887775432 33
Q ss_pred ccCCC-CCCEEECcCCcccccCCccc----cCC-CCCCEEEccCCcCccc----CCccccC-CCCCCeeecccCcccccC
Q 038187 402 LGHLN-RLTSLDLSGNNLVGPIPSSV----GHL-TQLTTFDMHSNRINGS----IPLEIGN-LKHVEDVYLFNNKLDGPI 470 (560)
Q Consensus 402 ~~~~~-~L~~L~L~~n~l~~~~p~~~----~~l-~~L~~L~l~~n~l~~~----~~~~~~~-l~~L~~L~l~~n~l~~~~ 470 (560)
+...+ +|++|++++|++++..+..+ ..+ ++|++|++++|.+++. ++..+.. .++|++|++++|++++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 34444 78888888887776554333 334 4777777777777652 3333433 347777777777777654
Q ss_pred chh----hhcCCCCCeeeCccCcccccC-------hhhhhcCcCCCeeeCcCCcCccccCc
Q 038187 471 PPQ----LLNCSRLRALSLSNNLLSGSI-------PSEIGKLKELYYLDLSQNFINGKIPS 520 (560)
Q Consensus 471 ~~~----l~~~~~L~~L~Ls~n~l~~~~-------p~~l~~l~~L~~L~L~~n~l~~~~p~ 520 (560)
+.. +..+++|++|++++|.+.+.. +..+..+++|+.|++++|++.+..+.
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 432 345567777777777744322 23445566677777777777655443
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=1.1e-23 Score=207.26 Aligned_cols=199 Identities=23% Similarity=0.245 Sum_probs=117.9
Q ss_pred CCCCEEEeecCcCcCCCchhc--cCCCCCCEEeccCCcccccCc----ccccCCCCCCEEECcCCcccccCCccccCCCC
Q 038187 358 NFLQVLDLSYNKLEGPIPSTI--ASLVNLTSLFLCNNSQTGFIP----STLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQ 431 (560)
Q Consensus 358 ~~L~~L~l~~n~~~~~~~~~l--~~~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~ 431 (560)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|++++..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 335555555555554444444 445555555555555554332 22334566666666666666555566666666
Q ss_pred CCEEEccCCcCccc--C--CccccCCCCCCeeecccCcccccCch----hhhcCCCCCeeeCccCcccccChhhhhcC--
Q 038187 432 LTTFDMHSNRINGS--I--PLEIGNLKHVEDVYLFNNKLDGPIPP----QLLNCSRLRALSLSNNLLSGSIPSEIGKL-- 501 (560)
Q Consensus 432 L~~L~l~~n~l~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~~~----~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l-- 501 (560)
|++|++++|++.+. + +..+..+++|++|++++|+++. ++. .+..+++|++|++++|++++.+|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 66666666665431 1 1223556667777777777652 222 24566777777777777776666666555
Q ss_pred -cCCCeeeCcCCcCccccCccCCCCCCCCEEeCCCCcCcc-ccCccCCCCCCeeeecccCC
Q 038187 502 -KELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLYG-SIPESLRKVPSLCVDGNNFE 560 (560)
Q Consensus 502 -~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~-~ip~~~~~l~~l~l~~n~~~ 560 (560)
++|++|++++|+++ .+|..+. ++|+.|++++|++++ .++..+.+|+.|++++|+|+
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTS
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcCCCCC
Confidence 47777777777777 5666553 567777777777776 45556666666667777663
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=1.4e-24 Score=216.27 Aligned_cols=254 Identities=18% Similarity=0.231 Sum_probs=167.4
Q ss_pred CCCEEECcCCCCccccCcccCCC--CCCCEEEccCCcCcccCCccccCCCCCCEEEccCCccccc-CCcCccCCCCCCEE
Q 038187 287 NLTSLFLCNNSQTGFIPSTLGHL--NRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGS-IPLEIGNFNFLQVL 363 (560)
Q Consensus 287 ~L~~L~l~~n~~~~~~~~~l~~l--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L 363 (560)
.++.++++++.+. +..+..+ ++++.+++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4667777776655 2334444 6777777777777665554 45677777777777777654 55666677777777
Q ss_pred EeecCcCcCCCchhccCCCCCCEEeccCC-ccccc-CcccccCCCCCCEEECcCC-ccccc-CCccccCCC-CCCEEEcc
Q 038187 364 DLSYNKLEGPIPSTIASLVNLTSLFLCNN-SQTGF-IPSTLGHLNRLTSLDLSGN-NLVGP-IPSSVGHLT-QLTTFDMH 438 (560)
Q Consensus 364 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n-~l~~~-~~~~~~~~~~L~~L~L~~n-~l~~~-~p~~~~~l~-~L~~L~l~ 438 (560)
++++|.+.+..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 77777777666777777777777777777 45542 4555666777777777777 66643 455566677 77777777
Q ss_pred CC--cCc-ccCCccccCCCCCCeeecccCc-ccccCchhhhcCCCCCeeeCccCc-ccccChhhhhcCcCCCeeeCcCCc
Q 038187 439 SN--RIN-GSIPLEIGNLKHVEDVYLFNNK-LDGPIPPQLLNCSRLRALSLSNNL-LSGSIPSEIGKLKELYYLDLSQNF 513 (560)
Q Consensus 439 ~n--~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~~~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~n~ 513 (560)
+| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. ++......+.++++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 77 444 3455566667777777777777 665666677777777777777773 33333335667777777777777
Q ss_pred CccccCccCCCC-CCCCEEeCCCCcCccccCccCCC
Q 038187 514 INGKIPSQLGEI-PSIDTVNLCTNNLYGSIPESLRK 548 (560)
Q Consensus 514 l~~~~p~~l~~l-~~L~~L~ls~n~l~~~ip~~~~~ 548 (560)
++.. .+..+ .+++.|++++|++++.+|..+++
T Consensus 283 i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 283 VPDG---TLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred cCHH---HHHHHHhhCcceEEecccCccccCCcccc
Confidence 3322 12222 23555567777777777776654
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=3.5e-22 Score=194.03 Aligned_cols=132 Identities=27% Similarity=0.305 Sum_probs=55.2
Q ss_pred cCCCCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCC
Q 038187 114 MGRLRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQ 193 (560)
Q Consensus 114 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 193 (560)
+.+++++++++++++.++.. |..+. +++++|++++|.+++..+..|..+++|++|++++|.+++. +. ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~i-p~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTAL-PPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSC-CSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCcC-CCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCC
Confidence 34444555555555554432 22221 3444455554444444444444444444444444444422 11 13444444
Q ss_pred EEEcccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCC
Q 038187 194 VLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRIN 251 (560)
Q Consensus 194 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 251 (560)
+|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|+++
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC
Confidence 4444444443 33333334444444444444443333333333333333333333333
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=4.3e-25 Score=224.35 Aligned_cols=245 Identities=17% Similarity=0.213 Sum_probs=114.7
Q ss_pred CcccccCCCCCCEEECcCCCCcCCcc----ccccCCCCCCEEECcCCC---CccccCccc-------CCCCCCCEEEccC
Q 038187 254 IPLEIGNFNFLQVLDLSYNKLEGPIP----STIANLVNLTSLFLCNNS---QTGFIPSTL-------GHLNRLTSLDLSG 319 (560)
Q Consensus 254 ~~~~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~l~~n~---~~~~~~~~l-------~~l~~L~~L~l~~ 319 (560)
++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|. +.+.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 34445556666666666666654422 224456666666666542 233333332 4455555555555
Q ss_pred CcCcc----cCCccccCCCCCCEEEccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCC---------CCCCE
Q 038187 320 NNLVG----PIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASL---------VNLTS 386 (560)
Q Consensus 320 n~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~---------~~L~~ 386 (560)
|.+.+ .++..+..+++|++|++++|.+++..+..+.. .+..+ ++|++
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------~l~~l~~~~~~~~~~~L~~ 163 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--------------------ALQELAVNKKAKNAPPLRS 163 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--------------------HHHHHHHHHHHHTCCCCCE
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH--------------------HHHHHhhhhhcccCCCCcE
Confidence 55544 23444445555555555555554322221111 11111 44444
Q ss_pred EeccCCccc-ccCc---ccccCCCCCCEEECcCCcccc-----cCCccccCCCCCCEEEccCCcCc----ccCCccccCC
Q 038187 387 LFLCNNSQT-GFIP---STLGHLNRLTSLDLSGNNLVG-----PIPSSVGHLTQLTTFDMHSNRIN----GSIPLEIGNL 453 (560)
Q Consensus 387 L~l~~n~l~-~~~~---~~~~~~~~L~~L~L~~n~l~~-----~~p~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l 453 (560)
|++++|.++ +.++ ..+..+++|+.|++++|+++. ..+..+..+++|++|++++|.++ +.+|..+..+
T Consensus 164 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~ 243 (386)
T 2ca6_A 164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243 (386)
T ss_dssp EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred EECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence 444444444 1122 233344455555555554431 12224444455555555555553 3344444455
Q ss_pred CCCCeeecccCccccc----Cchhhhc--CCCCCeeeCccCcccc----cChhhh-hcCcCCCeeeCcCCcCcccc
Q 038187 454 KHVEDVYLFNNKLDGP----IPPQLLN--CSRLRALSLSNNLLSG----SIPSEI-GKLKELYYLDLSQNFINGKI 518 (560)
Q Consensus 454 ~~L~~L~l~~n~l~~~----~~~~l~~--~~~L~~L~Ls~n~l~~----~~p~~l-~~l~~L~~L~L~~n~l~~~~ 518 (560)
++|++|++++|++++. ++..+.. +++|++|+|++|.+++ .+|..+ .++++|++|++++|++++..
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 5555555555555433 2333322 4555555555555554 244444 33455555555555555443
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=1.3e-22 Score=193.03 Aligned_cols=191 Identities=24% Similarity=0.274 Sum_probs=119.1
Q ss_pred CCccccceecCCCCCeEEEeccccCCCCceeecCCCCccccccccccCCCCCccEEECcCCCCCCcCccccCCCCCCCEE
Q 038187 68 NHCKWTGISCNSAGSVTGVSLLLYENDNIKGELGRFNFSCFPNLKKMGRLRNLVHLDLSDNYIEGYILPTLGHLSKLENL 147 (560)
Q Consensus 68 ~~C~w~gv~C~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 147 (560)
+||.|.|++|... .+.++++ +..+. .+|. . + .+++++|++++|.+++..+..|.++++|++|
T Consensus 3 ~Cp~~~gC~C~~~--~~~l~~~---~~~l~-~~p~-~---------~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L 64 (251)
T 3m19_A 3 TCETVTGCTCNEG--KKEVDCQ---GKSLD-SVPS-G---------I--PADTEKLDLQSTGLATLSDATFRGLTKLTWL 64 (251)
T ss_dssp -CHHHHSSEEEGG--GTEEECT---TCCCS-SCCS-C---------C--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCCCceEcCCC--CeEEecC---CCCcc-ccCC-C---------C--CCCCCEEEccCCCcCccCHhHhcCcccCCEE
Confidence 6889999999532 2345554 33322 1221 0 1 1466777777777776666667777777777
Q ss_pred ECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEcccCCCCccCccccCCCCCCCEEeCCCCccc
Q 038187 148 NLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELV 227 (560)
Q Consensus 148 ~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~ 227 (560)
++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++
T Consensus 65 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 65 NLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144 (251)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC
Confidence 77777776666666667777777777777766555555666667777777776666555555566666666666666666
Q ss_pred ccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCCcC
Q 038187 228 GPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEG 276 (560)
Q Consensus 228 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 276 (560)
+..+..|..+++|++|++++|++++..+..+..+++|+.|++++|.+..
T Consensus 145 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 5555556666666666666666665555555566666666666665543
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=1.9e-22 Score=190.44 Aligned_cols=196 Identities=13% Similarity=0.155 Sum_probs=104.8
Q ss_pred CCCEEEeecCcCcCCCchhccCCCCCCEEeccCCc-ccccCcccccCCCCCCEEECcC-CcccccCCccccCCCCCCEEE
Q 038187 359 FLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNS-QTGFIPSTLGHLNRLTSLDLSG-NNLVGPIPSSVGHLTQLTTFD 436 (560)
Q Consensus 359 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~ 436 (560)
+|++|++++|.+++..+..+..+++|++|++++|. +++..+..+..+++|++|++++ |++++..+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444444555555555555554 4443333455555555555555 555544444555555555555
Q ss_pred ccCCcCcccCCccccCCCCCC---eeecccC-cccccCchhhhcCCCCC-eeeCccCcccccChhhhhcCcCCCeeeCcC
Q 038187 437 MHSNRINGSIPLEIGNLKHVE---DVYLFNN-KLDGPIPPQLLNCSRLR-ALSLSNNLLSGSIPSEIGKLKELYYLDLSQ 511 (560)
Q Consensus 437 l~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~l~~~~~L~-~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 511 (560)
+++|++++ +|. +..+++|+ +|++++| .+++..+..+..+++|+ +|++++|+++ .+|......++|+.|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence 55555553 443 44555555 6666666 55544444455566666 6666666666 3333322235666666666
Q ss_pred Cc-CccccCccCCCC-CCCCEEeCCCCcCccccCccCCCCCCeeeecc
Q 038187 512 NF-INGKIPSQLGEI-PSIDTVNLCTNNLYGSIPESLRKVPSLCVDGN 557 (560)
Q Consensus 512 n~-l~~~~p~~l~~l-~~L~~L~ls~n~l~~~ip~~~~~l~~l~l~~n 557 (560)
|+ +++..+..|..+ ++|+.|++++|++++.-+..+.+++.|.++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCc
Confidence 63 554444556666 66666666666666333334556666655544
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=8.6e-23 Score=200.76 Aligned_cols=201 Identities=22% Similarity=0.262 Sum_probs=137.4
Q ss_pred CCCCEEEccCCcccccCCcCc--cCCCCCCEEEeecCcCcCCCc----hhccCCCCCCEEeccCCcccccCcccccCCCC
Q 038187 334 ARLTTFDMHSNRINGSIPLEI--GNFNFLQVLDLSYNKLEGPIP----STIASLVNLTSLFLCNNSQTGFIPSTLGHLNR 407 (560)
Q Consensus 334 ~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 407 (560)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 446666666666666555555 566666666666666665433 23345667777777777776666666677777
Q ss_pred CCEEECcCCccccc--C--CccccCCCCCCEEEccCCcCcccCCc----cccCCCCCCeeecccCcccccCchhhhcC--
Q 038187 408 LTSLDLSGNNLVGP--I--PSSVGHLTQLTTFDMHSNRINGSIPL----EIGNLKHVEDVYLFNNKLDGPIPPQLLNC-- 477 (560)
Q Consensus 408 L~~L~L~~n~l~~~--~--p~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~l~~~-- 477 (560)
|++|++++|++.+. + +..+..+++|++|++++|+++ .++. .+..+++|++|++++|++.+..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 77777777765531 1 223456777777777777775 2222 24566788888888888887767666665
Q ss_pred -CCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCccccCccCCCCCCCCEEeCCCCcCcc
Q 038187 478 -SRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLYG 540 (560)
Q Consensus 478 -~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~ 540 (560)
++|++|++++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|+.|++++|+++.
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 58888888888888 6677664 7888888888888853 43 5677888899999998874
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.3e-21 Score=186.12 Aligned_cols=181 Identities=23% Similarity=0.243 Sum_probs=125.6
Q ss_pred CCCCEEEccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEEC
Q 038187 334 ARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDL 413 (560)
Q Consensus 334 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 413 (560)
...++++++++.++ .+|..+. +.+++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 34567777777776 5555443 56777777777777766667777777777777777777766666777777777777
Q ss_pred cCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCccccc
Q 038187 414 SGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGS 493 (560)
Q Consensus 414 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 493 (560)
++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|+|++|++++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 77777766666667777777777777777755555566677777777777777655555666667777777777777765
Q ss_pred ChhhhhcCcCCCeeeCcCCcCccc
Q 038187 494 IPSEIGKLKELYYLDLSQNFINGK 517 (560)
Q Consensus 494 ~p~~l~~l~~L~~L~L~~n~l~~~ 517 (560)
.+..+..+++|+.|++++|++.+.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 555666667777777777776654
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=9.6e-22 Score=185.63 Aligned_cols=196 Identities=17% Similarity=0.201 Sum_probs=133.3
Q ss_pred CCCEEEccCCcccccCCcCccCCCCCCEEEeecCc-CcCCCchhccCCCCCCEEeccC-CcccccCcccccCCCCCCEEE
Q 038187 335 RLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNK-LEGPIPSTIASLVNLTSLFLCN-NSQTGFIPSTLGHLNRLTSLD 412 (560)
Q Consensus 335 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~ 412 (560)
++++|++++|++++..+..+..+++|++|++++|. +++..+..+..+++|++|++++ |.+++..+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666665444456666666666666665 5554445666666777777766 666655555666677777777
Q ss_pred CcCCcccccCCccccCCCCCC---EEEccCC-cCcccCCccccCCCCCC-eeecccCcccccCchhhhcCCCCCeeeCcc
Q 038187 413 LSGNNLVGPIPSSVGHLTQLT---TFDMHSN-RINGSIPLEIGNLKHVE-DVYLFNNKLDGPIPPQLLNCSRLRALSLSN 487 (560)
Q Consensus 413 L~~n~l~~~~p~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~ 487 (560)
+++|++++ +|. +..+++|+ +|++++| .+++..+..+..+++|+ +|++++|+++ .+|......++|++|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence 77777764 554 66666666 7777777 77755555677777787 8888888777 3444333337788888888
Q ss_pred Cc-ccccChhhhhcC-cCCCeeeCcCCcCccccCccCCCCCCCCEEeCCCC
Q 038187 488 NL-LSGSIPSEIGKL-KELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTN 536 (560)
Q Consensus 488 n~-l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n 536 (560)
|+ +++..+..+..+ ++|+.|++++|+++ .+|.. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 84 876666677777 88888888888887 45543 5677888888766
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.4e-21 Score=180.23 Aligned_cols=164 Identities=23% Similarity=0.255 Sum_probs=130.4
Q ss_pred CCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEE
Q 038187 117 LRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLD 196 (560)
Q Consensus 117 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 196 (560)
.+++++|++++|.+++..+..++.+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+.++++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 35889999999998877777788899999999999988876666778889999999999988866666678888888888
Q ss_pred cccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCCcC
Q 038187 197 LSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEG 276 (560)
Q Consensus 197 l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 276 (560)
+++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .++.|+.|+++.|+++|
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCc
Confidence 88888887666667888888888888888887666667788888888888886653 34567777777777777
Q ss_pred CccccccCCCC
Q 038187 277 PIPSTIANLVN 287 (560)
Q Consensus 277 ~~~~~l~~l~~ 287 (560)
.+|..++.++.
T Consensus 180 ~ip~~~~~l~~ 190 (208)
T 2o6s_A 180 VVRNSAGSVAP 190 (208)
T ss_dssp TBBCTTSSBCT
T ss_pred eeeccCccccC
Confidence 77776665543
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.6e-21 Score=191.36 Aligned_cols=195 Identities=23% Similarity=0.324 Sum_probs=156.7
Q ss_pred cCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCC
Q 038187 306 LGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLT 385 (560)
Q Consensus 306 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 385 (560)
...+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+.. . +..+++|++|++++|.+.+. + .+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPLKNV-S-AIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCC
Confidence 3457889999999998874 44 4788899999999999888543 3 88889999999999988753 3 678889999
Q ss_pred EEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCc
Q 038187 386 SLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNK 465 (560)
Q Consensus 386 ~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 465 (560)
+|++++|.+++. + .+..+++|+.|++++|++++..+ +..+++|++|++++|++++. +. +..+++|++|++++|+
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCc
Confidence 999999988864 3 37888899999999998875433 77888999999999988853 33 7888889999999998
Q ss_pred ccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCcc
Q 038187 466 LDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFING 516 (560)
Q Consensus 466 l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 516 (560)
+++..+ +..+++|++|++++|++++.. .+..+++|+.|++++|++++
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 885433 788888999999999888654 37888889999999998874
No 95
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=3.5e-21 Score=188.80 Aligned_cols=193 Identities=24% Similarity=0.373 Sum_probs=99.6
Q ss_pred CCCCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCE
Q 038187 115 GRLRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQV 194 (560)
Q Consensus 115 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 194 (560)
.++++|++|++++|.+... +.+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. + .+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l--~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccCc--hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCE
Confidence 3445566666666655542 245555566666666655553322 55555555555555555432 2 3455555555
Q ss_pred EEcccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCC
Q 038187 195 LDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKL 274 (560)
Q Consensus 195 L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l 274 (560)
|++++|.+++. + .+..+++|++|++++|.+++.. + +..+++|++|++++|.+
T Consensus 112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~------------------------~--l~~l~~L~~L~l~~n~l 163 (308)
T 1h6u_A 112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNIS------------------------P--LAGLTNLQYLSIGNAQV 163 (308)
T ss_dssp EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCG------------------------G--GGGCTTCCEEECCSSCC
T ss_pred EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCc------------------------c--ccCCCCccEEEccCCcC
Confidence 55555555432 2 2445555555555555544322 1 44445555555555554
Q ss_pred cCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCccc
Q 038187 275 EGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRIN 347 (560)
Q Consensus 275 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 347 (560)
.+. +. +..+++|+.|++++|.+++..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.++
T Consensus 164 ~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 164 SDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred CCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 432 22 4455555555555555543322 4555566666666666554332 556666666666666665
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=1.1e-20 Score=174.34 Aligned_cols=176 Identities=22% Similarity=0.242 Sum_probs=95.8
Q ss_pred CCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEc
Q 038187 358 NFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDM 437 (560)
Q Consensus 358 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 437 (560)
++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 34555555555555444444455555555555555555444444455555666666666555444444555566666666
Q ss_pred cCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCccc
Q 038187 438 HSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFINGK 517 (560)
Q Consensus 438 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 517 (560)
++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+ .+++|+.|+++.|+++|.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCce
Confidence 6666554444445555666666666666654444445556666666666665553 234556666666666666
Q ss_pred cCccCCCCCCCCEEeCCCCcCccccCc
Q 038187 518 IPSQLGEIPSIDTVNLCTNNLYGSIPE 544 (560)
Q Consensus 518 ~p~~l~~l~~L~~L~ls~n~l~~~ip~ 544 (560)
+|..++.++. ++..|...|..+.
T Consensus 181 ip~~~~~l~~----~~~~C~~~~~~~~ 203 (208)
T 2o6s_A 181 VRNSAGSVAP----DSAKCSGSGKPVR 203 (208)
T ss_dssp BBCTTSSBCT----TCSBBTTTCCBGG
T ss_pred eeccCccccC----CccccccCCCcce
Confidence 6666555543 3444444444333
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=9.8e-21 Score=199.23 Aligned_cols=187 Identities=23% Similarity=0.348 Sum_probs=134.2
Q ss_pred CCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEecc
Q 038187 311 RLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLC 390 (560)
Q Consensus 311 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 390 (560)
+++.|++++|.+.+ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 78888888888875 66544 377888888888887 566 346788888888888876 555 443 78888888
Q ss_pred CCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccC
Q 038187 391 NNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPI 470 (560)
Q Consensus 391 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 470 (560)
+|.+++ +|. .+++|+.|++++|++++ +|. .+++|++|++++|++++ +|. +. ++|+.|++++|+++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 888776 454 56788888888888774 554 46778888888888775 565 54 77888888888777 45
Q ss_pred chhhhcCCCC-------CeeeCccCcccccChhhhhcCcCCCeeeCcCCcCccccCccCCCC
Q 038187 471 PPQLLNCSRL-------RALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFINGKIPSQLGEI 525 (560)
Q Consensus 471 ~~~l~~~~~L-------~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 525 (560)
|. +.. +| +.|+|++|+++ .+|..+..+++|+.|+|++|++++.+|..+..+
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 55 433 56 77777777777 567777777777777777777777777666554
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=8.1e-20 Score=182.62 Aligned_cols=240 Identities=17% Similarity=0.128 Sum_probs=150.2
Q ss_pred CEEECcCCCCcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCC-ccccCCCCCCE-EEcc
Q 038187 265 QVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIP-SSMGHLARLTT-FDMH 342 (560)
Q Consensus 265 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~-L~l~ 342 (560)
++++-++++++ .+|..+ .+++++|++++|+++...+..|.++++|++|++++|++.+.+| ..|.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45677777777 566655 3578888888888876656677888888888888888765554 35667777665 4455
Q ss_pred CCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCC-cccccCcccccCCC-CCCEEECcCCcccc
Q 038187 343 SNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNN-SQTGFIPSTLGHLN-RLTSLDLSGNNLVG 420 (560)
Q Consensus 343 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n-~l~~~~~~~~~~~~-~L~~L~L~~n~l~~ 420 (560)
.|++....|..|..+++|++|++++|.+....+..+.....+..+++.++ .+....+..+..+. .++.|++++|+++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence 67777666677777788888888888777655555555666667777553 44433333444443 4667777777776
Q ss_pred cCCccccCCCCCCEEEccC-CcCcccCC-ccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhh
Q 038187 421 PIPSSVGHLTQLTTFDMHS-NRINGSIP-LEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEI 498 (560)
Q Consensus 421 ~~p~~~~~l~~L~~L~l~~-n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l 498 (560)
.+|.......+|+++++.+ |.++ .+| ..|..+++|++|++++|+++...+.. +.+|+.|.+.++.--..+| .+
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l 242 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TL 242 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CT
T ss_pred CCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cc
Confidence 3444444455677777764 3444 444 34566777777777777776332222 3455555554443333555 35
Q ss_pred hcCcCCCeeeCcCCc
Q 038187 499 GKLKELYYLDLSQNF 513 (560)
Q Consensus 499 ~~l~~L~~L~L~~n~ 513 (560)
.++++|+.+++.++.
T Consensus 243 ~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 243 EKLVALMEASLTYPS 257 (350)
T ss_dssp TTCCSCCEEECSCHH
T ss_pred hhCcChhhCcCCCCc
Confidence 666677777766543
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=2.5e-19 Score=167.57 Aligned_cols=164 Identities=24% Similarity=0.293 Sum_probs=118.1
Q ss_pred CCCCCCCCccccceecCCCCCeEEEeccccCCCCceeecCCCCccccccccccCCCCCccEEECcCCCCCCcCccccCCC
Q 038187 62 SGNYTSNHCKWTGISCNSAGSVTGVSLLLYENDNIKGELGRFNFSCFPNLKKMGRLRNLVHLDLSDNYIEGYILPTLGHL 141 (560)
Q Consensus 62 ~~~~~~~~C~w~gv~C~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 141 (560)
.++.+.+.|.|.+|.|...+ ++ .+|. .-.++|++|++++|.+++..+..|..+
T Consensus 11 ~~~~~~~~Cs~~~v~c~~~~-l~--------------~ip~------------~~~~~L~~L~Ls~n~i~~~~~~~~~~l 63 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRSKR-HA--------------SVPA------------GIPTNAQILYLHDNQITKLEPGVFDSL 63 (229)
T ss_dssp CCCCTTCEEETTEEECTTSC-CS--------------SCCS------------CCCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred ccCCCCCEEeCCEeEccCCC-cC--------------ccCC------------CCCCCCCEEEcCCCccCccCHHHhhCc
Confidence 34567788999999996321 11 1221 112578888888888888777778888
Q ss_pred CCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEcccCCCCccCccccCCCCCCCEEeC
Q 038187 142 SKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDL 221 (560)
Q Consensus 142 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L 221 (560)
++|++|+|++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++
T Consensus 64 ~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 142 (229)
T 3e6j_A 64 INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLAL 142 (229)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEEC
T ss_pred cCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEEC
Confidence 88888888888887655566778888888888888887665666777788888888888777 56677777777777777
Q ss_pred CCCcccccCCccccCCCCCCEEEeecCcCCcc
Q 038187 222 SLNELVGPIPSSLGHLTELTFFNIYSNRINGS 253 (560)
Q Consensus 222 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 253 (560)
++|++++..+..+..+++|+.|++++|.+...
T Consensus 143 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 143 DQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 77777765556667777777777777766543
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=2e-19 Score=179.80 Aligned_cols=180 Identities=21% Similarity=0.145 Sum_probs=98.3
Q ss_pred CCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCC-cCCCCCCCCCE-EeCcCCcCCcCCcccCCCCCCCCEE
Q 038187 118 RNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIP-STLGHLTRLTT-LAIASNQINSSIPLEIENLNFLQVL 195 (560)
Q Consensus 118 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~-L~L~~n~~~~~~~~~l~~l~~L~~L 195 (560)
+++++|+|++|.++...+.+|.++++|++|+|++|.+.+.+| ..|.+++++++ +.+..|++....|..|.++++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 467777777777776555667777777777777777655444 34566666554 4445566665556666667777777
Q ss_pred EcccCCCCccCccccCCCCCCCEEeCCC-CcccccCCccccCCC-CCCEEEeecCcCCccCcccccCCCCCCEEECcCC-
Q 038187 196 DLSRNEIGGSIPSTLGHLKRLRSLDLSL-NELVGPIPSSLGHLT-ELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYN- 272 (560)
Q Consensus 196 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n- 272 (560)
++++|.+....+..+....++..|++.+ +.+....+..|..+. .++.|++++|+++. ++.......+|+++++.++
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNN 188 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCC
Confidence 7777766654444445555566666644 334433333344332 35555555555542 3333333344555555432
Q ss_pred CCcCCcc-ccccCCCCCCEEECcCCCCc
Q 038187 273 KLEGPIP-STIANLVNLTSLFLCNNSQT 299 (560)
Q Consensus 273 ~l~~~~~-~~l~~l~~L~~L~l~~n~~~ 299 (560)
.++ .+| ..|..+++|++|++++|+++
T Consensus 189 ~l~-~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 189 NLE-ELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp TCC-CCCTTTTTTEECCSEEECTTSCCC
T ss_pred ccc-CCCHHHhccCcccchhhcCCCCcC
Confidence 222 222 23344444555555444444
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=3.3e-19 Score=187.66 Aligned_cols=189 Identities=24% Similarity=0.341 Sum_probs=105.2
Q ss_pred CCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCccCCCCCCEEEee
Q 038187 287 NLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLS 366 (560)
Q Consensus 287 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 366 (560)
+++.|++++|.+++ +|..+ +++|++|++++|.+. .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 44444444444443 23222 134555555555444 333 234455555555555553 333 322 55555555
Q ss_pred cCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccC
Q 038187 367 YNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSI 446 (560)
Q Consensus 367 ~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 446 (560)
+|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|++++ +|. +. ++|++|++++|+++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 555554 333 34556666666665554 333 34566666666666654 444 43 66666666666666 45
Q ss_pred CccccCCCCC-------CeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcC
Q 038187 447 PLEIGNLKHV-------EDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKE 503 (560)
Q Consensus 447 ~~~~~~l~~L-------~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~ 503 (560)
|. +.. +| +.|++++|+++ .+|..+..+++|+.|+|++|.+++.+|..+..++.
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 54 432 45 77788888777 46776777788888888888888777777766543
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=161.49 Aligned_cols=152 Identities=23% Similarity=0.269 Sum_probs=71.5
Q ss_pred CEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCc-ccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccC
Q 038187 361 QVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIP-STLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHS 439 (560)
Q Consensus 361 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~ 439 (560)
+.+++++|.++. +|..+ .+.+++|++++|.+++..+ ..+..+++|+.|++++|++++..+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 355555555542 33322 1234455555555554432 2244455555555555555444444444455555555555
Q ss_pred CcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCc
Q 038187 440 NRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFIN 515 (560)
Q Consensus 440 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 515 (560)
|++++..+..+..+++|++|++++|++++..|..+..+++|++|+|++|++++..|..+..+++|+.|++++|++.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 5554444444444444444444444444444444444444444444444444444444444444444444444444
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=1.1e-18 Score=185.66 Aligned_cols=190 Identities=23% Similarity=0.327 Sum_probs=131.3
Q ss_pred CCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCccCCCCCCEEEeec
Q 038187 288 LTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSY 367 (560)
Q Consensus 288 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 367 (560)
+..+.+..+.+....+ +..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 3344455555554332 3467778888888888763 33 36778888888888888875433 67778888888888
Q ss_pred CcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCC
Q 038187 368 NKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIP 447 (560)
Q Consensus 368 n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~ 447 (560)
|.+.+. + .+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|++++. ..+..+++|+.|+|++|++.+..|
T Consensus 97 N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 97 NKIKDL-S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp SCCCCC-T-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCCCC-h-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 877642 2 567777788888887777753 3566777777777777777754 456777777777777777775544
Q ss_pred ccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCccccc
Q 038187 448 LEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGS 493 (560)
Q Consensus 448 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 493 (560)
+..+++|+.|+|++|++++. +.+..+++|+.|+|++|++++.
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred --hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 66777777777777777753 3466777777777777777653
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.7e-18 Score=168.16 Aligned_cols=171 Identities=25% Similarity=0.399 Sum_probs=85.3
Q ss_pred CCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEcccCCCCccCccccCCCCCCCEE
Q 038187 140 HLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSL 219 (560)
Q Consensus 140 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 219 (560)
.+++|++|++++|.+.+. + .+..+++|++|++++|.+.+..+ +.++++|++|++++|.+++ + ..+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEE
Confidence 344444444444444322 1 24444444444444444443222 4444445555554444442 1 124445555555
Q ss_pred eCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCCcCCccccccCCCCCCEEECcCCCCc
Q 038187 220 DLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQT 299 (560)
Q Consensus 220 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 299 (560)
++++|++++. ..+..+++|+.|++++|++++. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 5555554432 2344555555555555555433 345555666666666666554332 555666666666666665
Q ss_pred cccCcccCCCCCCCEEEccCCcCcc
Q 038187 300 GFIPSTLGHLNRLTSLDLSGNNLVG 324 (560)
Q Consensus 300 ~~~~~~l~~l~~L~~L~l~~n~~~~ 324 (560)
+. + .+..+++|+.|++++|.+..
T Consensus 192 ~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 192 DL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp BC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CC-h-hhccCCCCCEEECcCCcccC
Confidence 43 2 35666666666666666553
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=3.1e-18 Score=159.01 Aligned_cols=134 Identities=22% Similarity=0.249 Sum_probs=102.0
Q ss_pred CCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEc
Q 038187 118 RNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDL 197 (560)
Q Consensus 118 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 197 (560)
+++++|++++|.+++..+..|..+++|++|+|++|.+.+..|..|.++++|++|+|++|.++...+..|.++++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 47788888888888776677888888888888888887777777888888888888888877555555677778888888
Q ss_pred ccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCC
Q 038187 198 SRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRIN 251 (560)
Q Consensus 198 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 251 (560)
++|.+++..|..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 888777776777777777777777777777666666777777777777777664
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1e-18 Score=169.70 Aligned_cols=186 Identities=26% Similarity=0.341 Sum_probs=143.1
Q ss_pred EEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcc
Q 038187 315 LDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQ 394 (560)
Q Consensus 315 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 394 (560)
+.+..+.+.+..+ +..+++|++|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+
T Consensus 29 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 29 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HHhcCCCcccccc--hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 3445555543322 35678899999999988743 3 47778899999999998886544 78888999999999888
Q ss_pred cccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhh
Q 038187 395 TGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQL 474 (560)
Q Consensus 395 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 474 (560)
++. ..+..+++|+.|++++|++++. ..+..+++|++|++++|++++. ..+..+++|++|++++|++++..+ +
T Consensus 103 ~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l 174 (291)
T 1h6t_A 103 KDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L 174 (291)
T ss_dssp CCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--h
Confidence 763 3478888899999998888753 4677888888888888888754 567788888888888888886544 7
Q ss_pred hcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCcc
Q 038187 475 LNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFING 516 (560)
Q Consensus 475 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 516 (560)
..+++|+.|++++|.+++ ++ .+..+++|+.|++++|++++
T Consensus 175 ~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred cCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 788888888888888885 44 37788888888888888775
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=2.9e-18 Score=159.28 Aligned_cols=152 Identities=21% Similarity=0.258 Sum_probs=89.4
Q ss_pred CEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCC
Q 038187 361 QVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSN 440 (560)
Q Consensus 361 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 440 (560)
+.++.+++.++ .+|..+. ++++.|++++|.+++..+..+..+++|+.|++++|++++..|..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45566666655 3343332 45666666666666555555666666666666666666555666666666666666666
Q ss_pred cCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCc
Q 038187 441 RINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFIN 515 (560)
Q Consensus 441 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 515 (560)
+++...+..+..+++|++|++++|++++..|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 666433344555666666666666666555555656666666666666666555555555666666666666554
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=3.6e-18 Score=181.68 Aligned_cols=173 Identities=27% Similarity=0.356 Sum_probs=107.6
Q ss_pred cCCCCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCC
Q 038187 114 MGRLRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQ 193 (560)
Q Consensus 114 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 193 (560)
+..+++|+.|++++|.+... +.+..+++|++|+|++|.+.+..+ +..+++|++|+|++|.+.+ +| .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 44556666677777666553 246666777777777776665433 6666777777777776653 23 566666677
Q ss_pred EEEcccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCC
Q 038187 194 VLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNK 273 (560)
Q Consensus 194 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~ 273 (560)
+|++++|.+.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|++++|.+.+..| +..+++|+.|+|++|.
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 777776666642 3456666666666666666643 456666666666666666665444 5666666666666666
Q ss_pred CcCCccccccCCCCCCEEECcCCCCcc
Q 038187 274 LEGPIPSTIANLVNLTSLFLCNNSQTG 300 (560)
Q Consensus 274 l~~~~~~~l~~l~~L~~L~l~~n~~~~ 300 (560)
+.+. +.+..+++|+.|++++|.+.+
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCC--hHHccCCCCCEEEccCCcCcC
Confidence 6542 245566666666666666554
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=5.7e-18 Score=157.24 Aligned_cols=134 Identities=20% Similarity=0.245 Sum_probs=95.4
Q ss_pred CccEEECcCCCCCCcCc-cccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEc
Q 038187 119 NLVHLDLSDNYIEGYIL-PTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDL 197 (560)
Q Consensus 119 ~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 197 (560)
.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 45677777777776643 44677777777777777777666667777777777777777777666666777777777777
Q ss_pred ccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCc
Q 038187 198 SRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRING 252 (560)
Q Consensus 198 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 252 (560)
++|.+++..|..+..+++|++|++++|++++..|..|..+++|+.|++++|.+..
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 7777776666677777777777777777776666666667777777776666654
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=9.2e-18 Score=156.93 Aligned_cols=136 Identities=20% Similarity=0.182 Sum_probs=74.8
Q ss_pred CCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeC
Q 038187 406 NRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSL 485 (560)
Q Consensus 406 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L 485 (560)
++|+.|++++|++++..|..+..+++|++|++++|++....+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 45555555555555444555555555555555555554333334455555555555555555444444555555666666
Q ss_pred ccCcccccChhhhhcCcCCCeeeCcCCcCccccCccCCCCCCCCEEeCCCCcCcccc
Q 038187 486 SNNLLSGSIPSEIGKLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLYGSI 542 (560)
Q Consensus 486 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~i 542 (560)
++|+++ .+|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 666555 45555555666666666666665444445555666666666666655443
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=6.4e-18 Score=169.55 Aligned_cols=177 Identities=23% Similarity=0.155 Sum_probs=144.7
Q ss_pred CEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcCcc-CCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccC
Q 038187 313 TSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLEIG-NFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCN 391 (560)
Q Consensus 313 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 391 (560)
+.++++++.+. .+|..+ .+.++.|++++|.+++..+..+. .+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 57888888887 466544 35688999999999877777776 889999999999999887778888899999999999
Q ss_pred CcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccc---cCCCCCCeeecccCcccc
Q 038187 392 NSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEI---GNLKHVEDVYLFNNKLDG 468 (560)
Q Consensus 392 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~ 468 (560)
|++++..+..|..+++|+.|+|++|++++..|..+..+++|++|++++|++++..+..+ ..+++|+.|++++|++++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99888777778889999999999999987778888899999999999999985433334 568889999999999987
Q ss_pred cCchhhhcCCC--CCeeeCccCcccc
Q 038187 469 PIPPQLLNCSR--LRALSLSNNLLSG 492 (560)
Q Consensus 469 ~~~~~l~~~~~--L~~L~Ls~n~l~~ 492 (560)
..+..+..++. ++.|+|++|.+..
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred cCHHHhhhccHhhcceEEecCCCccC
Confidence 66677877776 4889999988874
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=6e-18 Score=154.35 Aligned_cols=152 Identities=14% Similarity=0.221 Sum_probs=94.4
Q ss_pred CCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeee
Q 038187 381 LVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVY 460 (560)
Q Consensus 381 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 460 (560)
+++|++|++++|.++ .++ .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 445555555555554 223 3555556666666666443 223555666666666666666665666666677777777
Q ss_pred cccCcccccCchhhhcCCCCCeeeCccCc-ccccChhhhhcCcCCCeeeCcCCcCccccCccCCCCCCCCEEeCCCCcCc
Q 038187 461 LFNNKLDGPIPPQLLNCSRLRALSLSNNL-LSGSIPSEIGKLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLY 539 (560)
Q Consensus 461 l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~ 539 (560)
+++|++++..|..+..+++|++|++++|. ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 77777776666667777777777777776 44 444 56677777777777777764 33 5667777777777777765
Q ss_pred c
Q 038187 540 G 540 (560)
Q Consensus 540 ~ 540 (560)
+
T Consensus 195 ~ 195 (197)
T 4ezg_A 195 G 195 (197)
T ss_dssp -
T ss_pred C
Confidence 3
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=9.1e-18 Score=168.42 Aligned_cols=175 Identities=25% Similarity=0.209 Sum_probs=104.9
Q ss_pred cEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCC-CCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEccc
Q 038187 121 VHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLG-HLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSR 199 (560)
Q Consensus 121 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 199 (560)
+.++++++.++. +|..+. +.+++|+|++|.+++..+..+. ++++|++|+|++|.+.+..+..|.++++|++|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 567777777665 343332 3467777777777766565565 677777777777777665555666777777777777
Q ss_pred CCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccc---cCCCCCCEEECcCCCCcC
Q 038187 200 NEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEI---GNFNFLQVLDLSYNKLEG 276 (560)
Q Consensus 200 n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l---~~l~~L~~L~L~~n~l~~ 276 (560)
|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..+ ..+++|+.|+|++|++++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 77665555566666777777777776666656666666666666666666664333223 345555555555555554
Q ss_pred CccccccCCCC--CCEEECcCCCC
Q 038187 277 PIPSTIANLVN--LTSLFLCNNSQ 298 (560)
Q Consensus 277 ~~~~~l~~l~~--L~~L~l~~n~~ 298 (560)
..+..+..++. ++.|++++|.+
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCE
T ss_pred cCHHHhhhccHhhcceEEecCCCc
Confidence 33333444333 24444444444
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1.6e-17 Score=151.50 Aligned_cols=153 Identities=22% Similarity=0.260 Sum_probs=91.0
Q ss_pred CCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEE
Q 038187 356 NFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTF 435 (560)
Q Consensus 356 ~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 435 (560)
.+++|++|++++|.+. .+| .+..+++|++|++++|.++. +..+..+++|++|++++|++++..+..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3445555555555554 233 34455555555555554332 2345556666666666666665555566666666666
Q ss_pred EccCCcCcccCCccccCCCCCCeeecccCc-ccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcC
Q 038187 436 DMHSNRINGSIPLEIGNLKHVEDVYLFNNK-LDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFI 514 (560)
Q Consensus 436 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 514 (560)
++++|++++..+..+..+++|++|++++|+ +. .+| .+..+++|++|++++|++++ ++ .+..+++|+.|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 666666665556666666677777777776 43 344 46667777777777777774 33 566777777777777776
Q ss_pred cc
Q 038187 515 NG 516 (560)
Q Consensus 515 ~~ 516 (560)
.+
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 53
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=3.9e-18 Score=186.05 Aligned_cols=219 Identities=22% Similarity=0.253 Sum_probs=93.2
Q ss_pred CCCCEEEccCCcCcccCCccccCCCCCCEEE-----ccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCC
Q 038187 310 NRLTSLDLSGNNLVGPIPSSMGHLARLTTFD-----MHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNL 384 (560)
Q Consensus 310 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~-----l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L 384 (560)
+.++.|++.++.+.. .+..+.....|+.+. +..|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 457777777777654 232222222222222 2222222 33455666677777777777766 555555566777
Q ss_pred CEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccC
Q 038187 385 TSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNN 464 (560)
Q Consensus 385 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 464 (560)
++|+|++|.++ .+|..+..+++|+.|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 77777777766 56666666777777777777766 56666777777777777777665 56666667777777777777
Q ss_pred cccccCchhhhcCCC-CCeeeCccCcccccChhhhhcCcCCCeeeCcCC--------cCccccCccCCCCCCCCEEeCCC
Q 038187 465 KLDGPIPPQLLNCSR-LRALSLSNNLLSGSIPSEIGKLKELYYLDLSQN--------FINGKIPSQLGEIPSIDTVNLCT 535 (560)
Q Consensus 465 ~l~~~~~~~l~~~~~-L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n--------~l~~~~p~~l~~l~~L~~L~ls~ 535 (560)
++++.+|..+..+.. ...+++++|.+++.+|.. |+.|++++| .+.+.++..+..+..++...+++
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~ 400 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSY 400 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------------------------------------------
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeec
Confidence 777666666544321 223566677776666643 334445444 23333333444455555666666
Q ss_pred CcCcc
Q 038187 536 NNLYG 540 (560)
Q Consensus 536 n~l~~ 540 (560)
|-+.+
T Consensus 401 Nil~~ 405 (727)
T 4b8c_D 401 NTLCQ 405 (727)
T ss_dssp -CCCG
T ss_pred ccccc
Confidence 66654
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=6e-18 Score=184.55 Aligned_cols=142 Identities=23% Similarity=0.302 Sum_probs=74.2
Q ss_pred chhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCC
Q 038187 375 PSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLK 454 (560)
Q Consensus 375 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 454 (560)
+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|+++ .+|..+..++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 444555555555555555555 34444445555555555555555 55555555555555555555555 4555555555
Q ss_pred CCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcC-CCeeeCcCCcCccccCc
Q 038187 455 HVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKE-LYYLDLSQNFINGKIPS 520 (560)
Q Consensus 455 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~p~ 520 (560)
+|++|+|++|.++ .+|..++.+++|+.|+|++|.+++.+|..+..+.. +..+++++|.++|.+|.
T Consensus 294 ~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 294 QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 5555555555554 44555555555555555555555555555543211 12345555555555554
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=9.6e-18 Score=160.23 Aligned_cols=171 Identities=20% Similarity=0.290 Sum_probs=133.7
Q ss_pred CCCCCCEEEccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEE
Q 038187 332 HLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSL 411 (560)
Q Consensus 332 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 411 (560)
.+.+++.++++++.+++.. .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|+.|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 4556777788888887433 56778889999999998874 44 67788899999999998887544 7888899999
Q ss_pred ECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCccc
Q 038187 412 DLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLS 491 (560)
Q Consensus 412 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~ 491 (560)
++++|++++ +|... . ++|++|++++|++++ ++ .+..+++|++|++++|++++. + .+..+++|+.|++++|+++
T Consensus 91 ~L~~N~l~~-l~~~~-~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKN-LNGIP-S-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSC-CTTCC-C-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCC-cCccc-c-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 999998875 44332 2 888899999988885 33 577888888888888888864 3 6788888888888888888
Q ss_pred ccChhhhhcCcCCCeeeCcCCcCccc
Q 038187 492 GSIPSEIGKLKELYYLDLSQNFINGK 517 (560)
Q Consensus 492 ~~~p~~l~~l~~L~~L~L~~n~l~~~ 517 (560)
+. ..+..+++|+.|++++|++++.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 65 6677888888888888888755
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=2.7e-17 Score=157.08 Aligned_cols=169 Identities=25% Similarity=0.365 Sum_probs=103.7
Q ss_pred CCCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEE
Q 038187 116 RLRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVL 195 (560)
Q Consensus 116 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 195 (560)
.+.+++.++++++.+++.. .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +.++++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 4556677777777777643 56777888888888887763 44 57777888888888887775433 7777777777
Q ss_pred EcccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCCCc
Q 038187 196 DLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNKLE 275 (560)
Q Consensus 196 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~ 275 (560)
++++|.+++ ++. +.. ++|++|++++|++++. +.+..+++|+.|++++|++++. + .+..+++|++|++++|.+.
T Consensus 91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 777777764 332 222 6677777776666642 2355566666666666655532 2 3445555555555555554
Q ss_pred CCccccccCCCCCCEEECcCCCCc
Q 038187 276 GPIPSTIANLVNLTSLFLCNNSQT 299 (560)
Q Consensus 276 ~~~~~~l~~l~~L~~L~l~~n~~~ 299 (560)
+. ..+..+++|+.|++++|.+.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEE
T ss_pred ch--HHhccCCCCCEEeCCCCccc
Confidence 33 33444444444444444443
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=1.9e-19 Score=190.46 Aligned_cols=107 Identities=22% Similarity=0.272 Sum_probs=54.4
Q ss_pred CCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcC
Q 038187 432 LTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQ 511 (560)
Q Consensus 432 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 511 (560)
|+.|++++|.+++ +|. +..+++|+.|++++|+++ .+|..++.+++|+.|+|++|++++ +| .++.+++|+.|+|++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 4455555555542 333 445555555555555555 444455555555555555555553 44 455555555555555
Q ss_pred CcCcccc-CccCCCCCCCCEEeCCCCcCccccC
Q 038187 512 NFINGKI-PSQLGEIPSIDTVNLCTNNLYGSIP 543 (560)
Q Consensus 512 n~l~~~~-p~~l~~l~~L~~L~ls~n~l~~~ip 543 (560)
|++++.. |..+..+++|+.|++++|++++..|
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 5555444 5555555555555555555554433
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=1.4e-16 Score=144.45 Aligned_cols=171 Identities=21% Similarity=0.248 Sum_probs=115.6
Q ss_pred CEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCc-cccCCCCCCEEEccCCcCcccCCccccCCCCCCeeeccc
Q 038187 385 TSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPS-SVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFN 463 (560)
Q Consensus 385 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 463 (560)
+.++++++.++ .+|..+. +++++|++++|++++..+. .+..+++|++|++++|++++..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67788887775 4555443 3788888888888755553 377788888888888888877777777888888888888
Q ss_pred CcccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCccccCccCCCCCCCCEEeCCCCcCccccC
Q 038187 464 NKLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLYGSIP 543 (560)
Q Consensus 464 n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ip 543 (560)
|++++..+..+..+++|++|+|++|++++..|..+..+++|++|++++|++.+..+...- ...++...+..+......|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~-~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH-HHHHHHHCCSGGGCBBCSS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHH-HHHHHHcCCCCCCCCCCCC
Confidence 888877777777788888888888888877777777788888888888887765442100 0012222344444455556
Q ss_pred ccCCCCCCeeeecccC
Q 038187 544 ESLRKVPSLCVDGNNF 559 (560)
Q Consensus 544 ~~~~~l~~l~l~~n~~ 559 (560)
..+.+..-.++..+.|
T Consensus 167 ~~l~~~~l~~l~~~~~ 182 (192)
T 1w8a_A 167 SKVRDVQIKDLPHSEF 182 (192)
T ss_dssp TTTTTSBGGGSCTTTC
T ss_pred hHHcCCChhhCcHhhc
Confidence 6666654444555544
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=4.3e-19 Score=187.67 Aligned_cols=197 Identities=18% Similarity=0.202 Sum_probs=163.3
Q ss_pred cCCCCCCEEEccCCcccccCCcCccCCCCCCEEEeecCc-------------CcCCCchhccCCCCCCEEe-ccCCcccc
Q 038187 331 GHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNK-------------LEGPIPSTIASLVNLTSLF-LCNNSQTG 396 (560)
Q Consensus 331 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------~~~~~~~~l~~~~~L~~L~-l~~n~l~~ 396 (560)
...+.|+.|++++|.+. .+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 57889999999999997 789999999999999997764 5566777888888888888 55553321
Q ss_pred cCc-----cccc--CCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCccccc
Q 038187 397 FIP-----STLG--HLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGP 469 (560)
Q Consensus 397 ~~~-----~~~~--~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 469 (560)
... ..+. ....|+.|++++|.+++ +|. +..+++|+.|++++|+++ .+|..+..+++|+.|++++|++++
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-
Confidence 100 0011 11369999999999985 676 999999999999999999 889999999999999999999996
Q ss_pred CchhhhcCCCCCeeeCccCcccccC-hhhhhcCcCCCeeeCcCCcCccccCcc---CCCCCCCCEEeC
Q 038187 470 IPPQLLNCSRLRALSLSNNLLSGSI-PSEIGKLKELYYLDLSQNFINGKIPSQ---LGEIPSIDTVNL 533 (560)
Q Consensus 470 ~~~~l~~~~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~l 533 (560)
+| .++.+++|+.|+|++|++++.+ |..++.+++|+.|+|++|++++..|.. +..+++|+.||+
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 67 8999999999999999999876 999999999999999999999765532 234789999875
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=1.4e-16 Score=141.36 Aligned_cols=138 Identities=18% Similarity=0.168 Sum_probs=102.0
Q ss_pred CCCCCEEECcCCccc-ccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCee
Q 038187 405 LNRLTSLDLSGNNLV-GPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRAL 483 (560)
Q Consensus 405 ~~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L 483 (560)
.++|+.|++++|+++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 356777777777776 56676677777777777777777754 566777788888888888876677777778888888
Q ss_pred eCccCccccc-ChhhhhcCcCCCeeeCcCCcCccccC---ccCCCCCCCCEEeCCCCcCccccCcc
Q 038187 484 SLSNNLLSGS-IPSEIGKLKELYYLDLSQNFINGKIP---SQLGEIPSIDTVNLCTNNLYGSIPES 545 (560)
Q Consensus 484 ~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~ls~n~l~~~ip~~ 545 (560)
++++|++++. .+..+..+++|+.|++++|++++..+ ..+..+++|+.|++++|.+. ++|..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 8888888753 22677778888888888888875544 46778888888888888776 55554
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=2.4e-16 Score=136.80 Aligned_cols=128 Identities=16% Similarity=0.231 Sum_probs=94.0
Q ss_pred CCCCEEECcCCccc-ccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeee
Q 038187 406 NRLTSLDLSGNNLV-GPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALS 484 (560)
Q Consensus 406 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ 484 (560)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 56777777777776 56676667777777777777777754 5567777788888888887766777777778888888
Q ss_pred CccCccccc-ChhhhhcCcCCCeeeCcCCcCccccC---ccCCCCCCCCEEeCCC
Q 038187 485 LSNNLLSGS-IPSEIGKLKELYYLDLSQNFINGKIP---SQLGEIPSIDTVNLCT 535 (560)
Q Consensus 485 Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~ls~ 535 (560)
+++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++|+.||+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 888887753 34677778888888888888776555 4677778888887753
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=9e-17 Score=159.07 Aligned_cols=103 Identities=14% Similarity=0.081 Sum_probs=65.6
Q ss_pred CCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCC-eeecccCcccccCchhhhcCCCCCee
Q 038187 405 LNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVE-DVYLFNNKLDGPIPPQLLNCSRLRAL 483 (560)
Q Consensus 405 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~l~~~~~L~~L 483 (560)
+++|+.+++++|+++...+..|..+++|+++++.+| +....+..|.+|++|+ .+++.+ .++...+..|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 566666666666666444455666666666666665 5444455566666666 666666 5554445666777777777
Q ss_pred eCccCcccccChhhhhcCcCCCeeeC
Q 038187 484 SLSNNLLSGSIPSEIGKLKELYYLDL 509 (560)
Q Consensus 484 ~Ls~n~l~~~~p~~l~~l~~L~~L~L 509 (560)
++++|+++...+..|.++++|+.++.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 77777777555566777777776653
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=1.3e-15 Score=138.16 Aligned_cols=128 Identities=27% Similarity=0.344 Sum_probs=62.0
Q ss_pred cEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCc-CCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEccc
Q 038187 121 VHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPS-TLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSR 199 (560)
Q Consensus 121 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 199 (560)
++++++++.++. +|..+.. +|++|++++|.+.+..+. .|+.+++|++|++++|.+++..|..|.++++|++|++++
T Consensus 11 ~~l~~s~~~l~~-ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSS-CCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCc-CccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 344555554432 2332221 455555555555443332 244555555555555555544444555555555555555
Q ss_pred CCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCC
Q 038187 200 NEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRIN 251 (560)
Q Consensus 200 n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 251 (560)
|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 5555444444455555555555555555444444444555555555544444
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=6.3e-16 Score=137.04 Aligned_cols=136 Identities=24% Similarity=0.264 Sum_probs=91.1
Q ss_pred CCCCEEeccCCccc-ccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeee
Q 038187 382 VNLTSLFLCNNSQT-GFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVY 460 (560)
Q Consensus 382 ~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 460 (560)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 55666666666665 45555566666677777777766644 5566667777777777777665666666677777777
Q ss_pred cccCcccccC-chhhhcCCCCCeeeCccCcccccCh---hhhhcCcCCCeeeCcCCcCccccCc
Q 038187 461 LFNNKLDGPI-PPQLLNCSRLRALSLSNNLLSGSIP---SEIGKLKELYYLDLSQNFINGKIPS 520 (560)
Q Consensus 461 l~~n~l~~~~-~~~l~~~~~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~L~~n~l~~~~p~ 520 (560)
+++|++++.. +..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+. .+|.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 7777776532 2567777777777887777775444 36777788888888887766 3443
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=3.4e-16 Score=135.77 Aligned_cols=129 Identities=24% Similarity=0.297 Sum_probs=93.7
Q ss_pred CCCCccEEECcCCCCC-CcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCE
Q 038187 116 RLRNLVHLDLSDNYIE-GYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQV 194 (560)
Q Consensus 116 ~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 194 (560)
..+++++|++++|.++ +.++..+..+++|++|++++|.+.+. ..++.+++|++|++++|.+.+.+|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3467888888888887 66777778888888888888877755 66777888888888888877666766667778888
Q ss_pred EEcccCCCCcc-CccccCCCCCCCEEeCCCCcccccCC---ccccCCCCCCEEEee
Q 038187 195 LDLSRNEIGGS-IPSTLGHLKRLRSLDLSLNELVGPIP---SSLGHLTELTFFNIY 246 (560)
Q Consensus 195 L~l~~n~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~ 246 (560)
|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88888877753 33667777777777777777765544 356666666666554
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=8.4e-16 Score=152.06 Aligned_cols=260 Identities=13% Similarity=0.058 Sum_probs=183.0
Q ss_pred CCCccEEECcCCCCC--CcCccccCCCCCCCEEECCCCCCCCCCCcCCCC--------CCCCCEEeCcCCcCCcCCcccC
Q 038187 117 LRNLVHLDLSDNYIE--GYILPTLGHLSKLENLNLSSNALDGNIPSTLGH--------LTRLTTLAIASNQINSSIPLEI 186 (560)
Q Consensus 117 l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~--------l~~L~~L~L~~n~~~~~~~~~l 186 (560)
+++|++|||++|.+. .... +.++.++.+.+..+.+ .+..|.+ +++|+.|++.+ .++...+.+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCcc---cccccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 789999999999887 2222 2222345555555532 2345666 99999999998 7776667789
Q ss_pred CCCCCCCEEEcccCCCCccCccccCCCCCCCEEeCCCCcc----cccCCccccCCCCCC-EEEeecCcCCccCcccc---
Q 038187 187 ENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNEL----VGPIPSSLGHLTELT-FFNIYSNRINGSIPLEI--- 258 (560)
Q Consensus 187 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l----~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~l--- 258 (560)
.+|++|+.+++.+|.+....+..|..+.++.++....... .......|.++..|+ .+.+.... .++..+
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~ 197 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKA 197 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHT
T ss_pred hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhc
Confidence 9999999999999998877778888888888887766432 222234566677777 44444321 222221
Q ss_pred -cCCCCCCEEECcCCCCcCCccccc-cCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCC
Q 038187 259 -GNFNFLQVLDLSYNKLEGPIPSTI-ANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARL 336 (560)
Q Consensus 259 -~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 336 (560)
....+++.+.+.++-.. .....+ ..+++|+.+++.+|.++...+..|..+++|+.+++.+| +....+..|.++++|
T Consensus 198 ~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L 275 (329)
T 3sb4_A 198 GLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRL 275 (329)
T ss_dssp TCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred ccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhc
Confidence 13456667766654222 111112 23678999999988888777778888999999999887 665566678889999
Q ss_pred C-EEEccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEec
Q 038187 337 T-TFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFL 389 (560)
Q Consensus 337 ~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l 389 (560)
+ .+++.+ .++..-+..|..|++|+.+++..|.+....+..|.++++|+.++.
T Consensus 276 ~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 276 AGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 8 999988 676566678889999999999888888777778888999988864
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=3.7e-15 Score=133.25 Aligned_cols=132 Identities=20% Similarity=0.244 Sum_probs=78.3
Q ss_pred CEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccC
Q 038187 409 TSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNN 488 (560)
Q Consensus 409 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n 488 (560)
+.+++++++++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 45555555554 333222 245666666666665444444556666666666666666544444566666666666666
Q ss_pred cccccChhhhhcCcCCCeeeCcCCcCccccCccCCCCCCCCEEeCCCCcCccccC
Q 038187 489 LLSGSIPSEIGKLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNLYGSIP 543 (560)
Q Consensus 489 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ip 543 (560)
++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 6665555556666666666666666665444445666667777777776666554
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=5.6e-15 Score=132.12 Aligned_cols=112 Identities=22% Similarity=0.275 Sum_probs=77.2
Q ss_pred CCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEc
Q 038187 118 RNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDL 197 (560)
Q Consensus 118 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 197 (560)
++|++|++++|.+++..+..++.+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 47778888887777666666777777777777777777655555677777777777777776555555666777777777
Q ss_pred ccCCCCccCccccCCCCCCCEEeCCCCccccc
Q 038187 198 SRNEIGGSIPSTLGHLKRLRSLDLSLNELVGP 229 (560)
Q Consensus 198 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 229 (560)
++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 77777654444456666677777766666544
No 131
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.61 E-value=4.2e-14 Score=143.48 Aligned_cols=64 Identities=9% Similarity=0.067 Sum_probs=38.8
Q ss_pred CccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEccc
Q 038187 134 ILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSR 199 (560)
Q Consensus 134 ~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 199 (560)
...+|.+|.+|+.+.|..+ ++.+...+|.+|++|+.+++..+ ++..-...|.++.+|+.+.+..
T Consensus 63 g~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp CTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred HHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC
Confidence 3456777777777777643 44444556777777777777543 3333345566666666655543
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=4.6e-15 Score=134.47 Aligned_cols=127 Identities=24% Similarity=0.305 Sum_probs=68.6
Q ss_pred CEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccC
Q 038187 385 TSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNN 464 (560)
Q Consensus 385 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 464 (560)
+.++++++.++ .+|..+. ++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 34555555554 2333322 35566666666555 44555555555666666666555544455555555555555555
Q ss_pred cccccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCc
Q 038187 465 KLDGPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFIN 515 (560)
Q Consensus 465 ~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 515 (560)
++++..+..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 555554445555555555555555555433334555555555555555554
No 133
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.61 E-value=1.3e-13 Score=139.76 Aligned_cols=307 Identities=11% Similarity=0.022 Sum_probs=166.0
Q ss_pred cCCCCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCC
Q 038187 114 MGRLRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQ 193 (560)
Q Consensus 114 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 193 (560)
|..+++|+.+.+..+ ++.....+|.+|++|+.+++..+ +..+....|.++.+|+.+.+..+ +.......|.++..++
T Consensus 67 F~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 67 FQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSE
T ss_pred hhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccc
Confidence 888999999999754 66656778999999999999765 55455677899999998887654 3334445666665444
Q ss_pred EEEcccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCC
Q 038187 194 VLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNK 273 (560)
Q Consensus 194 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~ 273 (560)
...... ........|.++++|+.+.+.++. .......|.++.+|+.+.+..+ ++......+.++..|+.+.+..+.
T Consensus 144 ~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~ 219 (394)
T 4fs7_A 144 ITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL 219 (394)
T ss_dssp EECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC
T ss_pred cccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc
Confidence 333322 222334567788888888887553 3244456777788887777654 333334456666667666655443
Q ss_pred CcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcC
Q 038187 274 LEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLE 353 (560)
Q Consensus 274 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 353 (560)
.. +........+|+.+.+... .+......+..+..++.+.+..+... .....|..+..++.+......+. ...
T Consensus 220 ~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~ 292 (394)
T 4fs7_A 220 YY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKT 292 (394)
T ss_dssp CE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTT
T ss_pred eE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---ccc
Confidence 21 1122223345666655432 22223334555556666665544322 22334455555555554443221 123
Q ss_pred ccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCC
Q 038187 354 IGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLT 433 (560)
Q Consensus 354 ~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 433 (560)
+..+.+|+.+.+..+ +.......|..+++|+.+++.++ ++.....+|.+|.+|+.+.+..+ ++.....+|.+|.+|+
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence 444555555555432 22222334444445555544322 22222233444444444444433 2222233344444444
Q ss_pred EEEc
Q 038187 434 TFDM 437 (560)
Q Consensus 434 ~L~l 437 (560)
.+++
T Consensus 370 ~i~l 373 (394)
T 4fs7_A 370 KVEL 373 (394)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4444
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.60 E-value=1.5e-13 Score=138.91 Aligned_cols=241 Identities=10% Similarity=0.069 Sum_probs=127.1
Q ss_pred CCCEEeCcCCcCCcCCcccCCCCCCCCEEEcccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEee
Q 038187 167 RLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIY 246 (560)
Q Consensus 167 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 246 (560)
+|+.+.+..+ +...-..+|.++ +|+.+.+.. .++......|..+++|+.+++.+|.++......|. +.+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 3555554433 332333334442 355555543 33333334455555555555555544433333333 3455555554
Q ss_pred cCcCCccCcccccCCCCCCEEECcCCCCcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCc---
Q 038187 247 SNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLV--- 323 (560)
Q Consensus 247 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~--- 323 (560)
.+ +.......|..+++|+.+++..+ +.......|.+ .+|+.+.+. +.++......|..+++|+.+.+.++.+.
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~ 287 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDP 287 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence 22 33333344555555555555442 33222333444 456666663 3344444555666666666666665543
Q ss_pred --ccCCccccCCCCCCEEEccCCcccccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCccc
Q 038187 324 --GPIPSSMGHLARLTTFDMHSNRINGSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPST 401 (560)
Q Consensus 324 --~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 401 (560)
...+..|.++++|+.+.+.+ .+...-...|..|.+|+.+.+..+ ++......|..+ +|+.+++.+|.........
T Consensus 288 ~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~ 364 (401)
T 4fdw_A 288 EAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKV 364 (401)
T ss_dssp TCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSS
T ss_pred ccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccccc
Confidence 23344566777777777763 355444556777777777777544 444445566677 7777777777666555555
Q ss_pred ccCCC-CCCEEECcCCcc
Q 038187 402 LGHLN-RLTSLDLSGNNL 418 (560)
Q Consensus 402 ~~~~~-~L~~L~L~~n~l 418 (560)
|..++ .++.|.+..+.+
T Consensus 365 F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 365 WYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CCCSCTTCCEEEECGGGH
T ss_pred ccCCCCCccEEEeCHHHH
Confidence 65553 567777776654
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.60 E-value=1.6e-13 Score=138.69 Aligned_cols=246 Identities=9% Similarity=0.032 Sum_probs=115.2
Q ss_pred ccCCCCCCCCEEEcccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCC
Q 038187 184 LEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNF 263 (560)
Q Consensus 184 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 263 (560)
..|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+....+..|.+|++|+.+++..|.++......|. ..+
T Consensus 130 ~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~ 204 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAG 204 (401)
T ss_dssp TTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCC
T ss_pred hhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecc
Confidence 344443 4555555444 333333444442 455555553 33333344555555555555555555533333333 355
Q ss_pred CCEEECcCCCCcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccC
Q 038187 264 LQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHS 343 (560)
Q Consensus 264 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 343 (560)
|+.+.+..+ +.......|.++++|+.+++..+ ++......|.. .+|+.+.+. +.+...-...|.++++|+.+.+.+
T Consensus 205 L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 205 IEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEES
T ss_pred cCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCC
Confidence 555555432 33333344555555555555542 33333334444 455555552 223323334455555555555555
Q ss_pred Cccc-----ccCCcCccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcc
Q 038187 344 NRIN-----GSIPLEIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNL 418 (560)
Q Consensus 344 n~l~-----~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 418 (560)
+.+. ...+..|..|++|+.+.+.+ .+.......|.+|++|+.+++..+ ++.....+|..+ +|+.+++.+|..
T Consensus 281 ~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 281 STFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp SCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred ccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 4432 12233455555555555552 243333444555555555555333 333333445555 555555555554
Q ss_pred cccCCccccCCC-CCCEEEccCCc
Q 038187 419 VGPIPSSVGHLT-QLTTFDMHSNR 441 (560)
Q Consensus 419 ~~~~p~~~~~l~-~L~~L~l~~n~ 441 (560)
....+..|..++ +++.|.+..+.
T Consensus 358 ~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 358 PQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CBCCCSSCCCSCTTCCEEEECGGG
T ss_pred cccccccccCCCCCccEEEeCHHH
Confidence 433334444442 45555554443
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=3.2e-14 Score=128.87 Aligned_cols=126 Identities=23% Similarity=0.298 Sum_probs=63.6
Q ss_pred cEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEcccC
Q 038187 121 VHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRN 200 (560)
Q Consensus 121 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 200 (560)
++++++++.++. +|..+. ++|++|++++|.++ .+|..|.++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 455666655553 232221 35555555555554 34455555555555555555555444444555555555555555
Q ss_pred CCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcC
Q 038187 201 EIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRI 250 (560)
Q Consensus 201 ~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 250 (560)
.+++..+..|..+++|++|++++|.++...+..|..+++|+.|++++|.+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 55544444455555555555555555543333444444444444444444
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=7.9e-17 Score=147.05 Aligned_cols=153 Identities=20% Similarity=0.257 Sum_probs=101.1
Q ss_pred CCCCCCEEeccCCcccccCcc------cccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCC
Q 038187 380 SLVNLTSLFLCNNSQTGFIPS------TLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNL 453 (560)
Q Consensus 380 ~~~~L~~L~l~~n~l~~~~~~------~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 453 (560)
..+.++.++++.+.+++.+|. .+..+++|++|++++|++++ +| .+..+++|++|++++|+++ .+|..+..+
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence 344555555555555555444 66667777777777777764 55 6666777777777777776 556656666
Q ss_pred CCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccCh-hhhhcCcCCCeeeCcCCcCccccCcc----------C
Q 038187 454 KHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIP-SEIGKLKELYYLDLSQNFINGKIPSQ----------L 522 (560)
Q Consensus 454 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~----------l 522 (560)
++|++|++++|++++ +| .+..+++|+.|++++|++++..+ ..+..+++|++|++++|++++.+|.. +
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 777777777777775 33 56677777777777777774322 35667777777777777777665543 6
Q ss_pred CCCCCCCEEeCCCCcCc
Q 038187 523 GEIPSIDTVNLCTNNLY 539 (560)
Q Consensus 523 ~~l~~L~~L~ls~n~l~ 539 (560)
..+++|+.|| +|.++
T Consensus 171 ~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 171 KRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHCSSCSEEC--CGGGT
T ss_pred HhCCCcEEEC--CcccC
Confidence 6677777776 55554
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=9.6e-15 Score=130.39 Aligned_cols=132 Identities=21% Similarity=0.235 Sum_probs=68.4
Q ss_pred cCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCe
Q 038187 403 GHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRA 482 (560)
Q Consensus 403 ~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~ 482 (560)
..+++|+.|++++|+++ .+|......++|++|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 34455555555555554 2333222223555555555555532 34555555555555555555433333455556666
Q ss_pred eeCccCcccccChh--hhhcCcCCCeeeCcCCcCccccCcc----CCCCCCCCEEeCCCCcCc
Q 038187 483 LSLSNNLLSGSIPS--EIGKLKELYYLDLSQNFINGKIPSQ----LGEIPSIDTVNLCTNNLY 539 (560)
Q Consensus 483 L~Ls~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~ls~n~l~ 539 (560)
|++++|.++ .+|. .+..+++|+.|++++|+++ .+|.. +..+++|+.||+++|...
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 666666554 3443 4555556666666666655 33432 555566666666655543
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=1.1e-16 Score=146.05 Aligned_cols=153 Identities=22% Similarity=0.315 Sum_probs=128.5
Q ss_pred ccCCCCCCEEECcCCcccccCCc------cccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhh
Q 038187 402 LGHLNRLTSLDLSGNNLVGPIPS------SVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLL 475 (560)
Q Consensus 402 ~~~~~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 475 (560)
+.....++.++++.+.+++..|. .+..+++|++|++++|++++ +| .+..+++|++|++++|+++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 44556778888888888877776 88999999999999999986 67 8889999999999999999 6788888
Q ss_pred cCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCccccC-ccCCCCCCCCEEeCCCCcCccccCcc---------
Q 038187 476 NCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFINGKIP-SQLGEIPSIDTVNLCTNNLYGSIPES--------- 545 (560)
Q Consensus 476 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~ls~n~l~~~ip~~--------- 545 (560)
.+++|++|++++|++++ +| .+..+++|+.|++++|++++..+ ..+..+++|+.|++++|++++.+|..
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 88999999999999996 55 68899999999999999985332 57889999999999999999887763
Q ss_pred -CCCCCCee-eecccC
Q 038187 546 -LRKVPSLC-VDGNNF 559 (560)
Q Consensus 546 -~~~l~~l~-l~~n~~ 559 (560)
+.++..|. +.+|.+
T Consensus 169 ~~~~l~~L~~Ld~~~i 184 (198)
T 1ds9_A 169 VVKRLPNLKKLDGMPV 184 (198)
T ss_dssp HHHHCSSCSEECCGGG
T ss_pred HHHhCCCcEEECCccc
Confidence 55555555 555543
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=4.9e-14 Score=125.74 Aligned_cols=105 Identities=21% Similarity=0.206 Sum_probs=48.5
Q ss_pred CCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCch--hhhcCCCCCeee
Q 038187 407 RLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPP--QLLNCSRLRALS 484 (560)
Q Consensus 407 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~l~~~~~L~~L~ 484 (560)
+|+.|++++|++++. ..+..+++|++|++++|++++..+..+..+++|++|++++|++. .+|. .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 444444444444432 23444444444444444444322222344445555555555543 2232 444555555555
Q ss_pred CccCcccccChhh----hhcCcCCCeeeCcCCcCc
Q 038187 485 LSNNLLSGSIPSE----IGKLKELYYLDLSQNFIN 515 (560)
Q Consensus 485 Ls~n~l~~~~p~~----l~~l~~L~~L~L~~n~l~ 515 (560)
+++|.++ .+|.. +..+++|+.|++++|...
T Consensus 120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 5555555 23332 555555555555555443
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=5.6e-13 Score=117.99 Aligned_cols=104 Identities=25% Similarity=0.263 Sum_probs=50.8
Q ss_pred CEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccC
Q 038187 409 TSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNN 488 (560)
Q Consensus 409 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n 488 (560)
+.+++++|.++ .+|..+ .++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 45555555555 344333 245555555555555444444555555555555555555433333444455555555555
Q ss_pred cccccChhhhhcCcCCCeeeCcCCcCc
Q 038187 489 LLSGSIPSEIGKLKELYYLDLSQNFIN 515 (560)
Q Consensus 489 ~l~~~~p~~l~~l~~L~~L~L~~n~l~ 515 (560)
++++..+..+..+++|+.|+|++|++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 554433334444444555555554444
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=2.7e-12 Score=113.60 Aligned_cols=104 Identities=22% Similarity=0.244 Sum_probs=62.7
Q ss_pred cEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEcccC
Q 038187 121 VHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRN 200 (560)
Q Consensus 121 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 200 (560)
+++++++|.++. +|..+ .++|++|+|++|.+++..|..|.++++|++|++++|++++..+..|.++++|++|++++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 456666666654 33333 256666666666666655666666666666666666666554445566666666666666
Q ss_pred CCCccCccccCCCCCCCEEeCCCCccc
Q 038187 201 EIGGSIPSTLGHLKRLRSLDLSLNELV 227 (560)
Q Consensus 201 ~~~~~~~~~l~~l~~L~~L~L~~n~l~ 227 (560)
.+++..+..+..+++|++|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 666544445566666666666666554
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=1.3e-12 Score=116.01 Aligned_cols=104 Identities=21% Similarity=0.256 Sum_probs=55.3
Q ss_pred CEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccC
Q 038187 409 TSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNN 488 (560)
Q Consensus 409 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n 488 (560)
+.+++++|+++ .+|..+. ++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45666666654 4444332 55566666666655555555555555555555555555433333455555555555555
Q ss_pred cccccChhhhhcCcCCCeeeCcCCcCc
Q 038187 489 LLSGSIPSEIGKLKELYYLDLSQNFIN 515 (560)
Q Consensus 489 ~l~~~~p~~l~~l~~L~~L~L~~n~l~ 515 (560)
++++..+..+..+++|+.|++++|++.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 555433333555555555555555554
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.38 E-value=9.5e-11 Score=118.70 Aligned_cols=131 Identities=11% Similarity=0.122 Sum_probs=60.3
Q ss_pred CccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCC
Q 038187 353 EIGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQL 432 (560)
Q Consensus 353 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L 432 (560)
.|..+..|+.+.+..+... .....+..++.|+.+.+. +.++......|..|.+|+.++|..+ ++.....+|.+|.+|
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 4444555555555433221 223344455555555553 2233233344555666666666543 332334456666666
Q ss_pred CEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcc
Q 038187 433 TTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLL 490 (560)
Q Consensus 433 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l 490 (560)
+.+.+..+ ++..-...|.+|++|+.+++.++.... ..+..+.+|+.+.+..+.+
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 66666443 332334456666666666666654431 3445566666666655543
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.36 E-value=1.1e-10 Score=118.15 Aligned_cols=332 Identities=9% Similarity=0.057 Sum_probs=168.9
Q ss_pred CCcccCCCCC-CCCEEEcccCCCCccCccccCCCCCCCEEeCCCCc---ccccCCccccCCCCCCEEEeecCcCCccCcc
Q 038187 181 SIPLEIENLN-FLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNE---LVGPIPSSLGHLTELTFFNIYSNRINGSIPL 256 (560)
Q Consensus 181 ~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~---l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 256 (560)
+-..+|.++. .|+.+.+..+ ++.+-..+|.++++|+.+.+..+. ++......|..+.+|+.+.+..+ ++.....
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~ 131 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE 131 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence 3345677774 5888888754 555666778888888888887653 44334456677777776655433 3323344
Q ss_pred cccCCCCCCEEECcCCCCcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCC
Q 038187 257 EIGNFNFLQVLDLSYNKLEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARL 336 (560)
Q Consensus 257 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 336 (560)
.+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++......|. ..+|+.+.+..+... .....|..+.++
T Consensus 132 aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l 207 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFAL 207 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTC
T ss_pred hhhhhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhcccc
Confidence 5566667777766533 22233344556666666666543 2222223333 245666665443221 223344555555
Q ss_pred CEEEccCCcccccCCcCc-cCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcC
Q 038187 337 TTFDMHSNRINGSIPLEI-GNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSG 415 (560)
Q Consensus 337 ~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~ 415 (560)
+........... ....+ ........-. ........+..+.+.. .+.......|..+..|+.+.+.+
T Consensus 208 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~ 274 (394)
T 4gt6_A 208 STITSDSESYPA-IDNVLYEKSANGDYAL-----------IRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPD 274 (394)
T ss_dssp CEEEECCSSSCB-SSSCEEEECTTSCEEE-----------EECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCT
T ss_pred ceeccccccccc-ccceeecccccccccc-----------cccccccccceEEcCC-cceEcccceeeecccccEEeccc
Confidence 555444333221 11000 0000000000 0011122333333322 22222334566677777777765
Q ss_pred CcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCccCcccccCh
Q 038187 416 NNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNNLLSGSIP 495 (560)
Q Consensus 416 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p 495 (560)
+... .....|.++++|+.+.+. +.+.......|.+|.+|+.+.+..+ ++......|.+|.+|+.+.+..+ ++....
T Consensus 275 ~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~ 350 (394)
T 4gt6_A 275 SVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPE 350 (394)
T ss_dssp TCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCG
T ss_pred ccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhH
Confidence 4332 344556667777777774 3344344455667777777777644 33333456677777777777543 553445
Q ss_pred hhhhcCcCCCeeeCcCCcCccccCccCCCCCCCCEEeCCCCcC
Q 038187 496 SEIGKLKELYYLDLSQNFINGKIPSQLGEIPSIDTVNLCTNNL 538 (560)
Q Consensus 496 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l 538 (560)
..|.+|++|+.+++.++.... ..+..+.+|+.+.+..+.+
T Consensus 351 ~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 351 SAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp GGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred hHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 567777777777777665331 3455666677766655543
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=6.3e-12 Score=111.57 Aligned_cols=104 Identities=20% Similarity=0.244 Sum_probs=56.1
Q ss_pred cEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEcccC
Q 038187 121 VHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRN 200 (560)
Q Consensus 121 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 200 (560)
+.+++++|.++. +|..+. ++|++|+|++|.+.+..|..|.++++|++|+|++|++++..+..|.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 456666666543 333332 55666666666665555555555666666666666555443334455555555555555
Q ss_pred CCCccCccccCCCCCCCEEeCCCCccc
Q 038187 201 EIGGSIPSTLGHLKRLRSLDLSLNELV 227 (560)
Q Consensus 201 ~~~~~~~~~l~~l~~L~~L~L~~n~l~ 227 (560)
.+++..+..+..+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 555433333555555555555555544
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=4.2e-14 Score=141.63 Aligned_cols=134 Identities=17% Similarity=0.160 Sum_probs=64.0
Q ss_pred CCCCEEECcCCcccccCCccc-----cCCCCCCEEEccCCcCccc----CCccccCCCCCCeeecccCccccc----Cch
Q 038187 406 NRLTSLDLSGNNLVGPIPSSV-----GHLTQLTTFDMHSNRINGS----IPLEIGNLKHVEDVYLFNNKLDGP----IPP 472 (560)
Q Consensus 406 ~~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~ 472 (560)
++|+.|+|++|.+++.....+ ...++|++|++++|.+++. ++..+..+++|++|++++|.+.+. ++.
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~ 205 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA 205 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence 345555555555443222222 1234555555555555431 222334455566666666665532 234
Q ss_pred hhhcCCCCCeeeCccCccccc----ChhhhhcCcCCCeeeCcCCcCccccCccCCCC---C--CCCEEe--CCCCcCc
Q 038187 473 QLLNCSRLRALSLSNNLLSGS----IPSEIGKLKELYYLDLSQNFINGKIPSQLGEI---P--SIDTVN--LCTNNLY 539 (560)
Q Consensus 473 ~l~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l---~--~L~~L~--ls~n~l~ 539 (560)
.+...++|++|+|++|.+++. ++..+..+++|++|+|++|.|++.....+..+ . .++.+. +..|.++
T Consensus 206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 445556666666666666543 23334445666666666666654433322222 1 155555 5555554
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=6.7e-14 Score=140.12 Aligned_cols=167 Identities=18% Similarity=0.195 Sum_probs=123.6
Q ss_pred CCCCCEEeccCCcccccCcccc----c-CCCCCCEEECcCCcccccCCccc-cCCCCCCEEEccCCcCcccCCccc----
Q 038187 381 LVNLTSLFLCNNSQTGFIPSTL----G-HLNRLTSLDLSGNNLVGPIPSSV-GHLTQLTTFDMHSNRINGSIPLEI---- 450 (560)
Q Consensus 381 ~~~L~~L~l~~n~l~~~~~~~~----~-~~~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~l~~n~l~~~~~~~~---- 450 (560)
.+.|+.|++++|.++......+ . ..++|+.|+|++|.+++.....+ ..+++|++|++++|.+++.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3567777887777765432222 2 23688999999998865433222 345689999999999986544433
Q ss_pred -cCCCCCCeeecccCccccc----CchhhhcCCCCCeeeCccCcccccC----hhhhhcCcCCCeeeCcCCcCccc----
Q 038187 451 -GNLKHVEDVYLFNNKLDGP----IPPQLLNCSRLRALSLSNNLLSGSI----PSEIGKLKELYYLDLSQNFINGK---- 517 (560)
Q Consensus 451 -~~l~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~~~---- 517 (560)
...++|++|++++|.+++. ++..+..+++|++|+|++|.+++.. +..+...++|+.|+|++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3468899999999999753 4455678999999999999998643 56677788999999999999864
Q ss_pred cCccCCCCCCCCEEeCCCCcCccccCccCC
Q 038187 518 IPSQLGEIPSIDTVNLCTNNLYGSIPESLR 547 (560)
Q Consensus 518 ~p~~l~~l~~L~~L~ls~n~l~~~ip~~~~ 547 (560)
++..+...++|++|||++|++++.-...+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 455566678999999999999865554443
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.16 E-value=8.3e-11 Score=116.99 Aligned_cols=104 Identities=19% Similarity=0.170 Sum_probs=79.7
Q ss_pred EEECcCC-cccccCCccccCCCCCCEEEccC-CcCcccCCccccCCCCCCeeecccCcccccCchhhhcCCCCCeeeCcc
Q 038187 410 SLDLSGN-NLVGPIPSSVGHLTQLTTFDMHS-NRINGSIPLEIGNLKHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSN 487 (560)
Q Consensus 410 ~L~L~~n-~l~~~~p~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~ 487 (560)
.++++++ +++ .+|. +..+++|++|+|++ |.+.+..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4677777 776 5777 88888888888885 888876667788888888888888888877777788888888888888
Q ss_pred CcccccChhhhhcCcCCCeeeCcCCcCcc
Q 038187 488 NLLSGSIPSEIGKLKELYYLDLSQNFING 516 (560)
Q Consensus 488 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 516 (560)
|+|++..+..+..++ |+.|+|.+|++..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 888865555555444 8888888888763
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.13 E-value=1.8e-10 Score=114.62 Aligned_cols=102 Identities=24% Similarity=0.191 Sum_probs=61.5
Q ss_pred EECcCC-CCCCcCccccCCCCCCCEEECCC-CCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEcccC
Q 038187 123 LDLSDN-YIEGYILPTLGHLSKLENLNLSS-NALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRN 200 (560)
Q Consensus 123 L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 200 (560)
++++++ .++. +|. +..+++|++|+|++ |.+.+..+..|+++++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455555 5554 444 66666666666664 6666555566666666666666666666665666666666666666666
Q ss_pred CCCccCccccCCCCCCCEEeCCCCccc
Q 038187 201 EIGGSIPSTLGHLKRLRSLDLSLNELV 227 (560)
Q Consensus 201 ~~~~~~~~~l~~l~~L~~L~L~~n~l~ 227 (560)
.+++..+..+..++ |++|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 66644444444443 666666666554
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.12 E-value=3.4e-08 Score=99.23 Aligned_cols=315 Identities=10% Similarity=0.035 Sum_probs=161.7
Q ss_pred cCCCCCccEEECcCCCCCCcCccccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCC
Q 038187 114 MGRLRNLVHLDLSDNYIEGYILPTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIASNQINSSIPLEIENLNFLQ 193 (560)
Q Consensus 114 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 193 (560)
+....+|+.+.+... ++.....+|.+|.+|+.++|..+ ++.+...+|.++ +|+.+.+..+ +.......|..+ +|+
T Consensus 42 ~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~ 116 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLD 116 (379)
T ss_dssp GGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCS
T ss_pred cccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Ccc
Confidence 344556777777543 44444566777888888877644 444445556665 5666666433 332323344443 677
Q ss_pred EEEcccCCCCccCccccCCCCCCCEEeCCCCcccccCCccccCCCCCCEEEeecCcCCccCcccccCCCCCCEEECcCCC
Q 038187 194 VLDLSRNEIGGSIPSTLGHLKRLRSLDLSLNELVGPIPSSLGHLTELTFFNIYSNRINGSIPLEIGNFNFLQVLDLSYNK 273 (560)
Q Consensus 194 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~ 273 (560)
.+.+..+ ++......|..+ +++.+.+..+ ++......+..+..++.+.+..+........... .+.
T Consensus 117 ~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~ 182 (379)
T 4h09_A 117 DFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-----------YNK 182 (379)
T ss_dssp EEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-----------EET
T ss_pred cccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccccee-----------ccc
Confidence 7776554 221222333333 4555554433 2223334555666666665544322111000000 000
Q ss_pred CcCCccccccCCCCCCEEECcCCCCccccCcccCCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcccccCCcC
Q 038187 274 LEGPIPSTIANLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSMGHLARLTTFDMHSNRINGSIPLE 353 (560)
Q Consensus 274 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 353 (560)
.......+.....+..+.+.... .......+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++..-...
T Consensus 183 -~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~a 258 (379)
T 4h09_A 183 -NKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFL 258 (379)
T ss_dssp -TSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTT
T ss_pred -ccceeccccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccc
Confidence 00111223333444555444322 1223334555666666666543 22233344566667777776554 33333455
Q ss_pred ccCCCCCCEEEeecCcCcCCCchhccCCCCCCEEeccCCcccccCcccccCCCCCCEEECcCCcccccCCccccCCCCCC
Q 038187 354 IGNFNFLQVLDLSYNKLEGPIPSTIASLVNLTSLFLCNNSQTGFIPSTLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLT 433 (560)
Q Consensus 354 ~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 433 (560)
+..+.+|+.+.+..+ +.......+..|++|+.+.+.++.++......|.+|.+|+.+.|..+ ++.....+|.+|.+|+
T Consensus 259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS 336 (379)
T ss_dssp TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred cceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence 666777777777543 33333445667777777777766666555566777777777777643 4434445677777777
Q ss_pred EEEccCCcCcccCCccccCCC
Q 038187 434 TFDMHSNRINGSIPLEIGNLK 454 (560)
Q Consensus 434 ~L~l~~n~l~~~~~~~~~~l~ 454 (560)
.+.+..+ ++..-...|.+++
T Consensus 337 ~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 337 TISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CCCCCTT-CCEECTTTTTTSS
T ss_pred EEEECCc-cCEEchhHhhCCC
Confidence 7777543 3323334455543
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.10 E-value=2.4e-08 Score=100.37 Aligned_cols=59 Identities=10% Similarity=0.083 Sum_probs=32.3
Q ss_pred CCCCCCCCCEEeCcCCcCCcCCcccCCCCCCCCEEEcccCCCCccCccccCCCCCCCEEeCC
Q 038187 161 TLGHLTRLTTLAIASNQINSSIPLEIENLNFLQVLDLSRNEIGGSIPSTLGHLKRLRSLDLS 222 (560)
Q Consensus 161 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~ 222 (560)
++....+|+.+.+... ++.+-..+|.+|.+|+.+++..+ ++.+-..+|.++ +|+.+.+.
T Consensus 41 ~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~ 99 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGM 99 (379)
T ss_dssp TGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEEC
T ss_pred ccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECC
Confidence 3444566777776542 33344456677777777777543 443434455554 45555544
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.04 E-value=1.8e-10 Score=114.29 Aligned_cols=83 Identities=11% Similarity=0.296 Sum_probs=41.2
Q ss_pred CCCCCeeecccCcccccCchhhh---cCCCCCeeeCccCcccccC----hhhhhcCcCCCeeeCcCCcCccccCccCCC-
Q 038187 453 LKHVEDVYLFNNKLDGPIPPQLL---NCSRLRALSLSNNLLSGSI----PSEIGKLKELYYLDLSQNFINGKIPSQLGE- 524 (560)
Q Consensus 453 l~~L~~L~l~~n~l~~~~~~~l~---~~~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~- 524 (560)
+++|+.|++.+|.+.+..+..+. .+++|++|+|+.|.+++.. +..+..+++|+.|++++|.+++..-..+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 45566666665555543332222 3455666666666665532 222334566666666666655443332222
Q ss_pred CCCCCEEeCCCCc
Q 038187 525 IPSIDTVNLCTNN 537 (560)
Q Consensus 525 l~~L~~L~ls~n~ 537 (560)
+ ...++++.++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 1 2345555554
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.00 E-value=1.6e-10 Score=114.54 Aligned_cols=154 Identities=18% Similarity=0.257 Sum_probs=93.0
Q ss_pred cccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCcccc--CCCCCCeeeccc--Cccccc-----Cc
Q 038187 401 TLGHLNRLTSLDLSGNNLVGPIPSSVGHLTQLTTFDMHSNRINGSIPLEIG--NLKHVEDVYLFN--NKLDGP-----IP 471 (560)
Q Consensus 401 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~--n~l~~~-----~~ 471 (560)
.+..+|+|+.|+|++|.-. .++. + ..++|+.|++..|.+.......+. .+++|+.|+|+. +...+. +.
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 3445566666666555211 1222 2 256666666666665543322232 566677766642 111111 11
Q ss_pred hhh--hcCCCCCeeeCccCcccccChhhhh---cCcCCCeeeCcCCcCccc----cCccCCCCCCCCEEeCCCCcCcccc
Q 038187 472 PQL--LNCSRLRALSLSNNLLSGSIPSEIG---KLKELYYLDLSQNFINGK----IPSQLGEIPSIDTVNLCTNNLYGSI 542 (560)
Q Consensus 472 ~~l--~~~~~L~~L~Ls~n~l~~~~p~~l~---~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~ls~n~l~~~i 542 (560)
..+ ..+++|+.|+|.+|.+++..+..+. .+++|+.|+|+.|.+.+. ++..+..+++|+.|++++|.++...
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 122 3478999999999999876555554 478999999999999875 4444556799999999999988554
Q ss_pred CccCCC-C-CCeeeecc
Q 038187 543 PESLRK-V-PSLCVDGN 557 (560)
Q Consensus 543 p~~~~~-l-~~l~l~~n 557 (560)
-..+.. + ..+++++|
T Consensus 324 ~~~l~~alg~~~~~~~~ 340 (362)
T 2ra8_A 324 KKELQKSLPMKIDVSDS 340 (362)
T ss_dssp HHHHHHHCCSEEECCSB
T ss_pred HHHHHHHcCCEEEecCC
Confidence 333332 2 23445554
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.66 E-value=9.2e-09 Score=91.98 Aligned_cols=87 Identities=15% Similarity=0.216 Sum_probs=41.7
Q ss_pred CCCCCeeecccCccccc----CchhhhcCCCCCeeeCccCccccc----ChhhhhcCcCCCeeeC--cCCcCccc----c
Q 038187 453 LKHVEDVYLFNNKLDGP----IPPQLLNCSRLRALSLSNNLLSGS----IPSEIGKLKELYYLDL--SQNFINGK----I 518 (560)
Q Consensus 453 l~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L--~~n~l~~~----~ 518 (560)
.++|++|++++|.+.+. +...+...+.|++|+|++|.+++. +...+...++|++|+| ++|.+... +
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l 143 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI 143 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence 34444444444444321 223333445555555555555543 2333444455556666 55555533 2
Q ss_pred CccCCCCCCCCEEeCCCCcCc
Q 038187 519 PSQLGEIPSIDTVNLCTNNLY 539 (560)
Q Consensus 519 p~~l~~l~~L~~L~ls~n~l~ 539 (560)
.+.+...++|+.|++++|.+.
T Consensus 144 ~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 144 ANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCcCEEeccCCCCC
Confidence 333344455666666666553
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.58 E-value=2.2e-08 Score=89.46 Aligned_cols=63 Identities=13% Similarity=0.159 Sum_probs=32.0
Q ss_pred CCCCCeeecccCccccc----CchhhhcCCCCCeeeC--ccCcccccC----hhhhhcCcCCCeeeCcCCcCc
Q 038187 453 LKHVEDVYLFNNKLDGP----IPPQLLNCSRLRALSL--SNNLLSGSI----PSEIGKLKELYYLDLSQNFIN 515 (560)
Q Consensus 453 l~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~L--s~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~ 515 (560)
.+.|++|++++|.+.+. +...+...+.|++|+| ++|.++... .+.+...++|++|++++|.+.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 34455555555554432 2334444555666666 556555432 233344456666666666553
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.38 E-value=1.4e-07 Score=88.59 Aligned_cols=66 Identities=30% Similarity=0.367 Sum_probs=31.5
Q ss_pred cCCCCCeeeCccCcccc--cChhhhhcCcCCCeeeCcCCcCccccCccCCCCC--CCCEEeCCCCcCccccC
Q 038187 476 NCSRLRALSLSNNLLSG--SIPSEIGKLKELYYLDLSQNFINGKIPSQLGEIP--SIDTVNLCTNNLYGSIP 543 (560)
Q Consensus 476 ~~~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~ls~n~l~~~ip 543 (560)
++++|+.|+|++|++++ .+|..+..+++|+.|+|++|++++. ..+..+. +|+.|+|++|++++.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 34455555555555554 2334444555555555555555432 1122222 45555555555555444
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.38 E-value=4.1e-08 Score=92.22 Aligned_cols=79 Identities=24% Similarity=0.302 Sum_probs=48.7
Q ss_pred CCCCCCeeecccCcccc--cCchhhhcCCCCCeeeCccCcccccChhhhhcCc--CCCeeeCcCCcCccccCc-------
Q 038187 452 NLKHVEDVYLFNNKLDG--PIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLK--ELYYLDLSQNFINGKIPS------- 520 (560)
Q Consensus 452 ~l~~L~~L~l~~n~l~~--~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L~L~~n~l~~~~p~------- 520 (560)
++++|+.|+|++|++++ .+|..+..+++|+.|+|++|++++. ..+..+. +|++|+|++|++++.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 45566666666666665 3345556667777777777777643 2333333 677777777777765552
Q ss_pred cCCCCCCCCEEe
Q 038187 521 QLGEIPSIDTVN 532 (560)
Q Consensus 521 ~l~~l~~L~~L~ 532 (560)
.+..+|+|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 345567777665
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.32 E-value=3.6e-07 Score=79.52 Aligned_cols=84 Identities=14% Similarity=0.111 Sum_probs=50.2
Q ss_pred CCCCEEEccCCcCcccCCccccCCCCCCeeecccCc-ccccCchhhhcC----CCCCeeeCccC-cccccChhhhhcCcC
Q 038187 430 TQLTTFDMHSNRINGSIPLEIGNLKHVEDVYLFNNK-LDGPIPPQLLNC----SRLRALSLSNN-LLSGSIPSEIGKLKE 503 (560)
Q Consensus 430 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~~----~~L~~L~Ls~n-~l~~~~p~~l~~l~~ 503 (560)
..|+.||+++|.++...-..+..+++|++|+|++|. +++..-..+..+ ++|++|+|++| ++|+..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356666666666655444455566666666666664 554444444442 35667777666 366655556666666
Q ss_pred CCeeeCcCCc
Q 038187 504 LYYLDLSQNF 513 (560)
Q Consensus 504 L~~L~L~~n~ 513 (560)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777776664
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.27 E-value=2.9e-07 Score=80.10 Aligned_cols=86 Identities=7% Similarity=0.038 Sum_probs=74.2
Q ss_pred CCCCeeecccCcccccCchhhhcCCCCCeeeCccC-cccccChhhhhcC----cCCCeeeCcCCc-CccccCccCCCCCC
Q 038187 454 KHVEDVYLFNNKLDGPIPPQLLNCSRLRALSLSNN-LLSGSIPSEIGKL----KELYYLDLSQNF-INGKIPSQLGEIPS 527 (560)
Q Consensus 454 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~Ls~n-~l~~~~p~~l~~l----~~L~~L~L~~n~-l~~~~p~~l~~l~~ 527 (560)
..|++|++++|.+++..-..+..+++|++|+|++| .+++..-..+..+ ++|++|+|++|. +++.--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 57999999999999877778899999999999999 5888777777764 589999999995 88776667888999
Q ss_pred CCEEeCCCCc-Cc
Q 038187 528 IDTVNLCTNN-LY 539 (560)
Q Consensus 528 L~~L~ls~n~-l~ 539 (560)
|+.|++++|+ ++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 9999999985 44
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.53 E-value=4.8e-05 Score=67.45 Aligned_cols=66 Identities=11% Similarity=0.089 Sum_probs=32.8
Q ss_pred cCCCCCCEEECcCC-ccccc----CCccccCCCCCCEEEccCCcCcccC----CccccCCCCCCeeecccCcccc
Q 038187 403 GHLNRLTSLDLSGN-NLVGP----IPSSVGHLTQLTTFDMHSNRINGSI----PLEIGNLKHVEDVYLFNNKLDG 468 (560)
Q Consensus 403 ~~~~~L~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~ 468 (560)
..-+.|+.|+|++| ++... +.+.+..-..|+.|+|++|++.+.. ...+..-+.|++|+|++|.|.+
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 44556667777664 44321 2233444556666666666665321 1222233455555555555543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.44 E-value=7.9e-05 Score=66.04 Aligned_cols=114 Identities=9% Similarity=0.051 Sum_probs=61.0
Q ss_pred hccCCCCCCEEeccCC-ccccc----CcccccCCCCCCEEECcCCccccc----CCccccCCCCCCEEEccCCcCccc--
Q 038187 377 TIASLVNLTSLFLCNN-SQTGF----IPSTLGHLNRLTSLDLSGNNLVGP----IPSSVGHLTQLTTFDMHSNRINGS-- 445 (560)
Q Consensus 377 ~l~~~~~L~~L~l~~n-~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~-- 445 (560)
.+..-+.|++|++++| .+... +...+...+.|+.|+|++|++.+. +.+.+..-+.|++|+|++|.+.+.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3445567777777764 55432 233445566777777777776532 223344556777777777777643
Q ss_pred --CCccccCCCCCCeeecccC---cccc----cCchhhhcCCCCCeeeCccCcc
Q 038187 446 --IPLEIGNLKHVEDVYLFNN---KLDG----PIPPQLLNCSRLRALSLSNNLL 490 (560)
Q Consensus 446 --~~~~~~~l~~L~~L~l~~n---~l~~----~~~~~l~~~~~L~~L~Ls~n~l 490 (560)
+...+..-+.|++|+|++| .+.. .+.+.+..-+.|++|+++.|.+
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 2223334455666666543 2221 1233344445555555554443
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.35 E-value=0.0043 Score=51.11 Aligned_cols=57 Identities=21% Similarity=0.148 Sum_probs=41.7
Q ss_pred CeeecccCccc-ccCchhhhcCCCCCeeeCccCcccccChhhhhcCcCCCeeeCcCCcCc
Q 038187 457 EDVYLFNNKLD-GPIPPQLLNCSRLRALSLSNNLLSGSIPSEIGKLKELYYLDLSQNFIN 515 (560)
Q Consensus 457 ~~L~l~~n~l~-~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 515 (560)
..++.+++.++ ..+|..+ .++++.|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777888776 3455443 246888888888888655666778888888888888764
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.82 E-value=0.02 Score=47.06 Aligned_cols=11 Identities=27% Similarity=0.495 Sum_probs=4.1
Q ss_pred CCEEeCcCCcC
Q 038187 168 LTTLAIASNQI 178 (560)
Q Consensus 168 L~~L~L~~n~~ 178 (560)
|++|+|++|.+
T Consensus 33 l~~L~Ls~N~l 43 (130)
T 3rfe_A 33 TTELVLTGNNL 43 (130)
T ss_dssp CSEEECTTSCC
T ss_pred CCEEECCCCcC
Confidence 33333333333
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=51.11 E-value=47 Score=25.07 Aligned_cols=14 Identities=0% Similarity=0.083 Sum_probs=5.8
Q ss_pred cCCCCCCCCEEEcc
Q 038187 185 EIENLNFLQVLDLS 198 (560)
Q Consensus 185 ~l~~l~~L~~L~l~ 198 (560)
.|.+|.+|+.+.+-
T Consensus 15 aF~~c~~L~~i~iP 28 (100)
T 2lz0_A 15 LFAGNTVIREITVQ 28 (100)
T ss_dssp TTTTCTTCCCEEEC
T ss_pred HhcCCCCCcEEEcC
Confidence 34444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=43.48 E-value=30 Score=26.17 Aligned_cols=38 Identities=11% Similarity=0.147 Sum_probs=15.9
Q ss_pred cccCCCCCCCEEECCCCCCCCCCCcCCCCCCCCCEEeCc
Q 038187 136 PTLGHLSKLENLNLSSNALDGNIPSTLGHLTRLTTLAIA 174 (560)
Q Consensus 136 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 174 (560)
.+|.+|.+|+.+.|..+ ++.+-...|.+|.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 34444555554444432 222223334444444444443
Done!