Query 038188
Match_columns 384
No_of_seqs 142 out of 1694
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 08:28:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038188.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038188hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 9.7E-35 2.1E-39 256.1 26.1 216 106-333 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.7 2.5E-15 5.4E-20 124.9 17.5 141 215-358 1-164 (164)
3 PF08268 FBA_3: F-box associat 99.6 3.9E-14 8.5E-19 112.8 13.9 104 215-319 1-118 (129)
4 PLN03215 ascorbic acid mannose 99.6 1.6E-12 3.5E-17 119.0 24.5 303 8-340 1-355 (373)
5 PHA02713 hypothetical protein; 99.1 1.1E-08 2.4E-13 101.4 20.4 212 106-343 299-545 (557)
6 PHA02713 hypothetical protein; 99.0 3.4E-08 7.4E-13 97.9 19.8 220 120-366 273-522 (557)
7 KOG4441 Proteins containing BT 99.0 1.9E-07 4.2E-12 92.4 24.6 210 104-340 326-555 (571)
8 PF12937 F-box-like: F-box-lik 99.0 5.2E-10 1.1E-14 71.9 3.5 42 11-52 1-42 (47)
9 PLN02153 epithiospecifier prot 98.9 3.6E-07 7.9E-12 85.4 21.7 210 119-343 50-296 (341)
10 KOG4441 Proteins containing BT 98.9 2.6E-07 5.7E-12 91.4 20.2 198 119-341 301-509 (571)
11 PHA03098 kelch-like protein; P 98.9 3.9E-07 8.5E-12 90.6 21.0 195 120-340 312-520 (534)
12 PLN02193 nitrile-specifier pro 98.8 5.2E-07 1.1E-11 87.9 21.1 207 120-342 194-421 (470)
13 PHA02790 Kelch-like protein; P 98.8 5.1E-07 1.1E-11 88.2 21.0 184 120-338 288-477 (480)
14 PF00646 F-box: F-box domain; 98.8 1.7E-09 3.7E-14 69.9 2.4 45 10-54 2-46 (48)
15 smart00256 FBOX A Receptor for 98.8 5E-09 1.1E-13 65.2 2.7 39 14-52 1-39 (41)
16 TIGR03548 mutarot_permut cycli 98.7 4.5E-06 9.8E-11 77.4 21.6 179 182-367 87-314 (323)
17 TIGR03547 muta_rot_YjhT mutatr 98.7 9.3E-06 2E-10 76.1 22.4 240 108-366 15-331 (346)
18 PRK14131 N-acetylneuraminic ac 98.5 2.2E-05 4.7E-10 74.4 21.1 240 107-364 35-351 (376)
19 PHA03098 kelch-like protein; P 98.5 8.5E-06 1.8E-10 81.1 18.1 174 182-366 310-497 (534)
20 PHA02790 Kelch-like protein; P 98.4 2.1E-05 4.5E-10 77.0 18.7 169 182-366 286-456 (480)
21 PLN02193 nitrile-specifier pro 98.4 5.5E-05 1.2E-09 73.8 20.9 179 183-365 193-386 (470)
22 PLN02153 epithiospecifier prot 98.4 9.9E-05 2.1E-09 69.0 21.6 178 183-364 50-259 (341)
23 PRK14131 N-acetylneuraminic ac 98.1 0.00049 1.1E-08 65.3 20.6 148 183-336 189-373 (376)
24 TIGR03548 mutarot_permut cycli 97.9 0.00044 9.5E-09 64.2 15.8 139 194-340 52-203 (323)
25 KOG1230 Protein containing rep 97.9 0.00057 1.2E-08 62.6 15.2 159 183-344 154-353 (521)
26 KOG4693 Uncharacterized conser 97.9 0.00076 1.7E-08 58.3 14.2 136 182-319 156-308 (392)
27 KOG0281 Beta-TrCP (transducin 97.8 0.0016 3.4E-08 58.4 15.1 44 11-54 75-122 (499)
28 TIGR03547 muta_rot_YjhT mutatr 97.6 0.0035 7.7E-08 58.7 16.2 154 183-341 29-237 (346)
29 KOG2120 SCF ubiquitin ligase, 97.4 8.5E-05 1.8E-09 65.5 2.4 40 10-49 97-136 (419)
30 KOG0379 Kelch repeat-containin 97.0 0.042 9.1E-07 53.8 16.7 207 120-342 89-312 (482)
31 KOG0379 Kelch repeat-containin 96.8 0.13 2.8E-06 50.5 17.9 179 184-364 89-283 (482)
32 KOG4693 Uncharacterized conser 96.4 0.096 2.1E-06 45.7 12.5 215 120-344 45-289 (392)
33 KOG2997 F-box protein FBX9 [Ge 96.1 0.0036 7.8E-08 55.6 2.2 43 11-53 107-154 (366)
34 KOG1230 Protein containing rep 96.0 0.56 1.2E-05 43.7 15.7 157 183-342 98-291 (521)
35 PF13964 Kelch_6: Kelch motif 95.7 0.027 5.9E-07 36.1 4.8 40 214-253 6-47 (50)
36 PF02191 OLF: Olfactomedin-lik 94.6 1.9 4.1E-05 38.2 14.5 118 213-340 72-212 (250)
37 COG4257 Vgb Streptogramin lyas 94.4 3 6.5E-05 37.0 14.6 218 108-341 70-315 (353)
38 PF01344 Kelch_1: Kelch motif; 94.2 0.17 3.6E-06 31.7 5.3 38 213-250 5-43 (47)
39 KOG0310 Conserved WD40 repeat- 93.4 5.9 0.00013 37.7 15.6 167 182-367 47-218 (487)
40 COG4257 Vgb Streptogramin lyas 93.4 2 4.4E-05 38.0 11.8 124 103-256 192-318 (353)
41 PF13360 PQQ_2: PQQ-like domai 93.2 5.3 0.00011 34.7 16.0 187 109-337 35-236 (238)
42 PF08450 SGL: SMP-30/Gluconola 92.9 6.2 0.00013 34.7 18.6 198 107-341 8-223 (246)
43 PF07646 Kelch_2: Kelch motif; 92.7 0.34 7.4E-06 30.8 4.9 39 214-252 6-47 (49)
44 smart00284 OLF Olfactomedin-li 92.7 4.5 9.9E-05 35.8 13.3 117 214-340 78-217 (255)
45 COG3055 Uncharacterized protei 92.6 8.3 0.00018 35.6 15.2 178 182-369 112-362 (381)
46 TIGR01640 F_box_assoc_1 F-box 90.0 12 0.00026 32.5 16.0 117 217-341 3-137 (230)
47 PF02897 Peptidase_S9_N: Proly 90.0 18 0.0004 34.5 17.0 119 216-339 284-412 (414)
48 PF13964 Kelch_6: Kelch motif 90.0 0.57 1.2E-05 29.8 3.8 21 119-139 28-48 (50)
49 KOG0274 Cdc4 and related F-box 89.6 24 0.00051 35.2 19.5 44 9-52 106-149 (537)
50 PF07762 DUF1618: Protein of u 89.6 2.4 5.2E-05 33.4 7.9 66 234-299 5-97 (131)
51 PF07893 DUF1668: Protein of u 89.2 5.4 0.00012 37.2 11.2 85 184-275 200-296 (342)
52 PF13360 PQQ_2: PQQ-like domai 88.1 16 0.00036 31.5 14.0 109 215-337 32-146 (238)
53 smart00612 Kelch Kelch domain. 86.7 1.2 2.7E-05 27.3 3.7 20 182-201 14-33 (47)
54 PF13418 Kelch_4: Galactose ox 86.7 1.2 2.7E-05 28.0 3.8 37 214-250 6-44 (49)
55 KOG4341 F-box protein containi 85.8 0.52 1.1E-05 44.2 2.1 39 10-48 71-109 (483)
56 PRK11138 outer membrane biogen 85.4 18 0.0004 34.3 12.7 106 214-336 64-183 (394)
57 PF10282 Lactonase: Lactonase, 84.7 20 0.00044 33.4 12.4 114 219-340 154-286 (345)
58 KOG4152 Host cell transcriptio 83.2 35 0.00075 33.2 12.8 92 119-228 57-155 (830)
59 PF13418 Kelch_4: Galactose ox 82.7 2 4.4E-05 27.0 3.4 20 119-138 29-48 (49)
60 PLN02772 guanylate kinase 82.6 8.9 0.00019 36.3 8.8 76 213-289 28-107 (398)
61 PF13415 Kelch_3: Galactose ox 80.8 4.5 9.8E-05 25.4 4.5 35 220-254 2-39 (49)
62 PRK11138 outer membrane biogen 80.1 45 0.00098 31.7 13.1 106 213-337 250-359 (394)
63 PF08450 SGL: SMP-30/Gluconola 78.7 44 0.00096 29.2 15.2 109 215-338 5-129 (246)
64 PF07250 Glyoxal_oxid_N: Glyox 78.6 47 0.001 29.3 12.3 167 182-364 45-226 (243)
65 PF01344 Kelch_1: Kelch motif; 78.3 3.7 8E-05 25.4 3.5 20 182-201 27-46 (47)
66 TIGR03300 assembly_YfgL outer 77.5 50 0.0011 31.0 12.5 104 214-335 60-167 (377)
67 PF10282 Lactonase: Lactonase, 76.4 66 0.0014 29.9 17.7 149 182-340 165-333 (345)
68 KOG0294 WD40 repeat-containing 76.2 49 0.0011 30.1 10.8 109 214-334 47-160 (362)
69 COG3386 Gluconolactonase [Carb 76.1 57 0.0012 30.0 11.8 109 219-339 36-159 (307)
70 smart00612 Kelch Kelch domain. 75.9 10 0.00022 23.0 5.1 21 234-254 14-35 (47)
71 PF07646 Kelch_2: Kelch motif; 74.4 8.9 0.00019 24.1 4.5 30 311-340 9-47 (49)
72 TIGR03074 PQQ_membr_DH membran 73.9 70 0.0015 33.5 13.0 31 213-249 188-220 (764)
73 TIGR03075 PQQ_enz_alc_DH PQQ-d 73.9 62 0.0013 32.3 12.4 111 213-337 63-195 (527)
74 smart00564 PQQ beta-propeller 73.5 11 0.00024 21.0 4.4 26 312-337 5-30 (33)
75 PF06433 Me-amine-dh_H: Methyl 71.6 45 0.00098 30.9 9.9 122 214-342 188-332 (342)
76 PF05096 Glu_cyclase_2: Glutam 70.3 80 0.0017 28.2 16.1 138 182-339 67-211 (264)
77 cd01207 Ena-Vasp Enabled-VASP- 68.9 18 0.00039 27.5 5.7 44 119-170 9-52 (111)
78 PF13415 Kelch_3: Galactose ox 68.7 5 0.00011 25.2 2.3 21 119-139 19-39 (49)
79 COG1520 FOG: WD40-like repeat 67.5 1.1E+02 0.0024 28.7 13.2 137 182-337 34-177 (370)
80 KOG3545 Olfactomedin and relat 65.7 59 0.0013 28.6 8.9 117 214-340 72-211 (249)
81 TIGR03300 assembly_YfgL outer 65.5 1.2E+02 0.0026 28.4 13.2 106 213-337 235-344 (377)
82 COG4946 Uncharacterized protei 62.2 47 0.001 32.1 8.1 98 234-341 205-305 (668)
83 KOG2502 Tub family proteins [G 61.8 6.3 0.00014 36.1 2.4 39 9-47 43-89 (355)
84 PF01011 PQQ: PQQ enzyme repea 61.4 14 0.0003 21.8 3.2 25 314-338 1-25 (38)
85 PF08268 FBA_3: F-box associat 60.7 36 0.00078 26.5 6.4 55 313-367 5-65 (129)
86 PF07893 DUF1668: Protein of u 59.5 1.5E+02 0.0033 27.6 14.2 129 110-256 76-223 (342)
87 PF13013 F-box-like_2: F-box-l 59.3 7.1 0.00015 29.6 2.0 29 11-39 22-50 (109)
88 KOG2437 Muskelin [Signal trans 58.7 13 0.00027 36.0 3.9 125 214-338 265-419 (723)
89 COG3055 Uncharacterized protei 57.8 1.6E+02 0.0036 27.4 11.8 132 182-320 195-356 (381)
90 KOG0316 Conserved WD40 repeat- 57.6 1.3E+02 0.0029 26.3 17.9 109 109-253 27-141 (307)
91 cd00260 Sialidase Sialidases o 56.7 1.7E+02 0.0036 27.2 12.9 116 183-298 112-241 (351)
92 KOG2055 WD40 repeat protein [G 56.2 55 0.0012 31.3 7.5 90 280-369 235-327 (514)
93 PF13570 PQQ_3: PQQ-like domai 54.3 20 0.00043 21.3 3.0 21 312-332 20-40 (40)
94 KOG4547 WD40 repeat-containing 54.2 2.3E+02 0.005 28.1 14.9 119 232-358 77-195 (541)
95 PF03088 Str_synth: Strictosid 53.4 27 0.00059 25.4 4.1 19 322-340 36-54 (89)
96 cd01206 Homer Homer type EVH1 51.1 41 0.00089 25.4 4.7 39 119-168 11-50 (111)
97 KOG0291 WD40-repeat-containing 51.0 3E+02 0.0066 28.5 12.0 79 214-294 250-344 (893)
98 KOG1274 WD40 repeat protein [G 49.4 3.4E+02 0.0075 28.7 12.5 111 215-336 61-173 (933)
99 KOG0649 WD40 repeat protein [G 49.0 1.9E+02 0.0041 25.6 11.6 60 280-339 81-152 (325)
100 KOG4152 Host cell transcriptio 47.0 1.8E+02 0.0038 28.7 9.3 105 182-289 229-362 (830)
101 cd00216 PQQ_DH Dehydrogenases 45.6 3.1E+02 0.0067 27.0 12.4 31 213-249 55-87 (488)
102 KOG1963 WD40 repeat protein [G 45.4 1.9E+02 0.0042 30.0 9.8 97 234-333 431-540 (792)
103 KOG2055 WD40 repeat protein [G 43.9 3.1E+02 0.0067 26.6 13.9 142 183-337 235-380 (514)
104 KOG0289 mRNA splicing factor [ 43.5 3.1E+02 0.0067 26.4 12.4 125 182-321 368-495 (506)
105 KOG0315 G-protein beta subunit 41.8 2.5E+02 0.0055 24.9 18.6 109 232-343 143-257 (311)
106 TIGR02658 TTQ_MADH_Hv methylam 41.3 3.1E+02 0.0067 25.8 19.5 116 216-338 202-338 (352)
107 PF09372 PRANC: PRANC domain; 40.7 21 0.00045 26.3 2.0 25 9-33 70-94 (97)
108 PLN00181 protein SPA1-RELATED; 40.1 4.7E+02 0.01 27.6 21.8 100 232-334 637-741 (793)
109 KOG0279 G protein beta subunit 39.5 1.1E+02 0.0025 27.4 6.4 65 265-335 201-266 (315)
110 PLN02919 haloacid dehalogenase 38.3 5.8E+02 0.013 28.1 17.2 65 218-289 813-889 (1057)
111 TIGR03866 PQQ_ABC_repeats PQQ- 38.0 2.8E+02 0.006 24.3 13.6 114 219-340 167-289 (300)
112 PF05096 Glu_cyclase_2: Glutam 37.9 3E+02 0.0065 24.7 13.3 111 218-339 54-166 (264)
113 PF14157 YmzC: YmzC-like prote 34.5 1.4E+02 0.003 20.0 4.7 16 324-339 42-57 (63)
114 PF15408 PH_7: Pleckstrin homo 34.1 22 0.00048 25.4 1.1 25 28-52 76-100 (104)
115 PLN02772 guanylate kinase 33.2 2.9E+02 0.0063 26.4 8.5 75 261-335 28-112 (398)
116 PRK11028 6-phosphogluconolacto 31.9 4E+02 0.0086 24.3 18.1 115 219-340 185-315 (330)
117 KOG0293 WD40 repeat-containing 31.6 4.7E+02 0.01 25.1 12.9 113 234-357 375-492 (519)
118 KOG0647 mRNA export protein (c 29.7 3.4E+02 0.0074 24.8 7.8 61 280-344 50-115 (347)
119 KOG0649 WD40 repeat protein [G 29.2 4.1E+02 0.0089 23.6 12.1 94 234-336 135-240 (325)
120 PF12768 Rax2: Cortical protei 29.0 1.8E+02 0.0038 26.4 6.2 109 182-297 15-130 (281)
121 COG2706 3-carboxymuconate cycl 28.0 5E+02 0.011 24.2 14.8 116 219-341 155-286 (346)
122 PF14298 DUF4374: Domain of un 27.7 5.7E+02 0.012 24.8 13.2 98 150-289 324-423 (435)
123 PF00400 WD40: WD domain, G-be 26.8 1.3E+02 0.0028 17.0 5.0 38 292-329 1-39 (39)
124 KOG0639 Transducin-like enhanc 26.3 6.4E+02 0.014 24.9 9.7 102 233-337 438-545 (705)
125 PF06977 SdiA-regulated: SdiA- 26.2 4.6E+02 0.01 23.2 9.3 51 219-274 182-239 (248)
126 KOG0319 WD40-repeat-containing 25.7 7.6E+02 0.017 25.6 11.2 110 234-357 39-157 (775)
127 KOG0289 mRNA splicing factor [ 25.7 6.2E+02 0.013 24.5 11.8 116 216-340 355-471 (506)
128 KOG2321 WD40 repeat protein [G 25.6 7E+02 0.015 25.1 10.4 103 234-340 154-267 (703)
129 KOG0772 Uncharacterized conser 25.5 1.6E+02 0.0034 28.9 5.4 76 279-363 385-473 (641)
130 PTZ00420 coronin; Provisional 24.9 7.4E+02 0.016 25.1 15.1 117 219-340 178-302 (568)
131 PF13854 Kelch_5: Kelch motif 24.8 1.6E+02 0.0034 17.6 3.7 31 214-244 9-41 (42)
132 KOG0321 WD40 repeat-containing 24.6 3.5E+02 0.0076 27.4 7.6 103 232-335 71-179 (720)
133 KOG3926 F-box proteins [Amino 24.2 86 0.0019 28.0 3.2 37 11-47 202-239 (332)
134 PF15525 DUF4652: Domain of un 24.2 4.4E+02 0.0096 22.3 7.3 61 280-341 86-158 (200)
135 COG2706 3-carboxymuconate cycl 23.9 6E+02 0.013 23.7 18.3 153 182-341 166-333 (346)
136 PF14870 PSII_BNR: Photosynthe 23.8 5.7E+02 0.012 23.4 15.8 114 215-340 66-183 (302)
137 cd00200 WD40 WD40 domain, foun 23.5 4.5E+02 0.0097 22.1 12.5 95 234-335 30-127 (289)
138 PF00568 WH1: WH1 domain; Int 22.1 1.9E+02 0.0041 21.8 4.5 39 119-169 16-55 (111)
139 PF07569 Hira: TUP1-like enhan 21.4 5.3E+02 0.012 22.2 7.8 79 260-341 14-105 (219)
140 KOG0292 Vesicle coat complex C 20.4 1.1E+03 0.024 25.4 16.2 72 262-334 210-283 (1202)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=9.7e-35 Score=256.09 Aligned_cols=216 Identities=23% Similarity=0.437 Sum_probs=163.3
Q ss_pred eccccceEEEeeCCeEEEEccCcccccccCCCCCCCCcccccceeeeEEeeeCCCCCEEEEEEEEEecccccccccccEE
Q 038188 106 LGPYDGIFCLCDGGLITLWNPATKECRTLPNYKKNLPALATFLKRNAIFGLCDASGDYKVVFICKLWNEKIQDAYEHAHV 185 (384)
Q Consensus 106 ~~s~~GLl~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 185 (384)
++|||||||+.....++||||+||+++.||+++.... . .....++||||+.+++||||++....... ....+
T Consensus 1 ~~sCnGLlc~~~~~~~~V~NP~T~~~~~LP~~~~~~~--~-~~~~~~~~G~d~~~~~YKVv~~~~~~~~~-----~~~~~ 72 (230)
T TIGR01640 1 VVPCDGLICFSYGKRLVVWNPSTGQSRWLPTPKSRRS--N-KESDTYFLGYDPIEKQYKVLCFSDRSGNR-----NQSEH 72 (230)
T ss_pred CcccceEEEEecCCcEEEECCCCCCEEecCCCCCccc--c-cccceEEEeecccCCcEEEEEEEeecCCC-----CCccE
Confidence 4789999999988899999999999999997654211 1 11236899999999999999997642211 25789
Q ss_pred EEEEcCCCccccccCCccccceeecCCcceEEECceEEEEEeecCCCCccEEEEEEcCCceee-eecCCCCCC--CCcee
Q 038188 186 AVYTSSTDSWRVSKGNIKWIPYVFESYYNNANLNGVFYWFVSRAGDFHSKLILLFRISDEEFQ-EIQRPCIPY--TPFES 262 (384)
Q Consensus 186 ~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~--~~~~~ 262 (384)
+||++++++||.++..+ +..... ..+|++||++||++..........|++||+++|+|+ .+++|.... .....
T Consensus 73 ~Vys~~~~~Wr~~~~~~---~~~~~~-~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~ 148 (230)
T TIGR01640 73 QVYTLGSNSWRTIECSP---PHHPLK-SRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLS 148 (230)
T ss_pred EEEEeCCCCccccccCC---CCcccc-CCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceE
Confidence 99999999999987432 211122 239999999999997532222238999999999999 599997652 23568
Q ss_pred EEEECCeEEEEEecCCCCeEEEEEEcC---CceeEEEEeCC--CCcc---ccceEEEeCCEEEEEEeC--Ce-EEEEECC
Q 038188 263 LAPLNGSIALLHLDESNQYIEIWVMNE---MNWIQQFAIGP--FLGV---KSPCGFWKNNAVLMESIN--GK-LLLYDLV 331 (384)
Q Consensus 263 l~~~~G~L~l~~~~~~~~~l~iW~l~~---~~W~~~~~i~~--~~~~---~~~~~~~~~~~il~~~~~--~~-l~~yd~~ 331 (384)
|++++|+|+++........++||+|++ ..|+|+++|+. ...+ ..|+++.++++|++.... +. +++||++
T Consensus 149 L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~ 228 (230)
T TIGR01640 149 LINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVG 228 (230)
T ss_pred EEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEecc
Confidence 999999999997754335699999997 57999999973 2222 237888888999887664 34 9999998
Q ss_pred CC
Q 038188 332 VQ 333 (384)
Q Consensus 332 t~ 333 (384)
++
T Consensus 229 ~~ 230 (230)
T TIGR01640 229 EN 230 (230)
T ss_pred CC
Confidence 75
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.69 E-value=2.5e-15 Score=124.87 Aligned_cols=141 Identities=20% Similarity=0.270 Sum_probs=100.4
Q ss_pred eEEECceEEEEEeecCCCCccEEEEEEcCCcee-eeecCCCCCC--CCceeEEEE-CCeEEEEEecCCCCeEEEEEEcC-
Q 038188 215 NANLNGVFYWFVSRAGDFHSKLILLFRISDEEF-QEIQRPCIPY--TPFESLAPL-NGSIALLHLDESNQYIEIWVMNE- 289 (384)
Q Consensus 215 ~v~~~G~lywl~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~--~~~~~l~~~-~G~L~l~~~~~~~~~l~iW~l~~- 289 (384)
+|++||++||++..........|++||+++|+| +.+++|.... .....|++. +|+||++........++||+|++
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~ 80 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKY 80 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeee
Confidence 589999999999864333233899999999999 7899998774 345567554 77999997655556799999994
Q ss_pred ----CceeEEEEeCCCCc--c-----ccceEEEeCCEEEEEEe--C-----CeEEEEECCCCeEEEEeeccCCCCcceEE
Q 038188 290 ----MNWIQQFAIGPFLG--V-----KSPCGFWKNNAVLMESI--N-----GKLLLYDLVVQEMRDLGRFSSGELGAAIL 351 (384)
Q Consensus 290 ----~~W~~~~~i~~~~~--~-----~~~~~~~~~~~il~~~~--~-----~~l~~yd~~t~~~~~v~~~~~~~~~~~~~ 351 (384)
.+|+|.++|+.... . ...+.+.+++++++... . ..+++|+ +++.++++....... +.+.
T Consensus 81 ~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~~~--~~~~ 157 (164)
T PF07734_consen 81 GYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDIEDKSS--CWPS 157 (164)
T ss_pred ccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEcccccCCC--CCCC
Confidence 68999999984321 1 12233445556655421 1 4578888 888888887732211 5677
Q ss_pred EEEEecc
Q 038188 352 IYCYKES 358 (384)
Q Consensus 352 ~~~y~~s 358 (384)
++.|+||
T Consensus 158 ~~~YvpS 164 (164)
T PF07734_consen 158 ICNYVPS 164 (164)
T ss_pred EEEECCC
Confidence 8899997
No 3
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.59 E-value=3.9e-14 Score=112.78 Aligned_cols=104 Identities=23% Similarity=0.459 Sum_probs=80.2
Q ss_pred eEEECceEEEEEeecCCCCccEEEEEEcCCceeeeecCC--CCCCCCceeEEEECCeEEEEEecCCC--CeEEEEEEcC-
Q 038188 215 NANLNGVFYWFVSRAGDFHSKLILLFRISDEEFQEIQRP--CIPYTPFESLAPLNGSIALLHLDESN--QYIEIWVMNE- 289 (384)
Q Consensus 215 ~v~~~G~lywl~~~~~~~~~~~il~fD~~~~~~~~i~~P--~~~~~~~~~l~~~~G~L~l~~~~~~~--~~l~iW~l~~- 289 (384)
++++||.+||++.. .......|++||+.+|+|+.|++| .........|.+++|+|+++...... ..++||+|+|
T Consensus 1 gicinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~ 79 (129)
T PF08268_consen 1 GICINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDY 79 (129)
T ss_pred CEEECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecc
Confidence 58999999999986 234588999999999999999999 33356778999999999999765432 4799999998
Q ss_pred --CceeEEEEeCCCC-------ccccceEEEeCCEEEEE
Q 038188 290 --MNWIQQFAIGPFL-------GVKSPCGFWKNNAVLME 319 (384)
Q Consensus 290 --~~W~~~~~i~~~~-------~~~~~~~~~~~~~il~~ 319 (384)
++|++.+.+-|.. ....++++.++|+|++.
T Consensus 80 ~k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 80 EKQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred ccceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 7899987755432 12345555666666655
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.57 E-value=1.6e-12 Score=119.01 Aligned_cols=303 Identities=13% Similarity=0.139 Sum_probs=153.7
Q ss_pred ccccCCCCHHHHHHHHccCC-hhhhhhhhcccHhhHhhcCChHhHHHHhhccCCCCceEEEEeeeecCCCCCceeEeccC
Q 038188 8 IASSMLMPEDVRLEILSRLP-VKSLMRLRCVCKSWYALIENPKFISKHLENFNDENAHLMISYQVYDDNGPNSVTSLFKD 86 (384)
Q Consensus 8 ~~~~~~LP~dll~eIl~rLp-~~~l~r~r~VcK~W~~li~~p~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (384)
++.|++||+||+..|..||| ..+++|||+|||+||+.+.... + ..+..++++++ +....+..+. .+ ++
T Consensus 1 ~~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~--~~~~~~~~~~~-~~~~~~~~~~---~~--~~ 69 (373)
T PLN03215 1 MADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---K--KNPFRTRPLIL-FNPINPSETL---TD--DR 69 (373)
T ss_pred CCChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---c--cCCcccccccc-cCcccCCCCc---cc--cc
Confidence 35799999999999999997 5999999999999999886420 0 00011112222 1110000000 00 00
Q ss_pred CCccCCCCCCCCcccccee---eccccceEEEee----CCeEEEEccCcccccccCCCCCCCCc-ccccceeeeEE-eee
Q 038188 87 KTLADLSYENIHRPISREL---LGPYDGIFCLCD----GGLITLWNPATKECRTLPNYKKNLPA-LATFLKRNAIF-GLC 157 (384)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~---~~s~~GLl~~~~----~~~~~V~NP~T~~~~~LP~~~~~~~~-~~~~~~~~~~~-g~d 157 (384)
...... ..++......++ -++..|.|.-.. .+.+.+.||.++.-..+|+....... ....-...+.+ +.+
T Consensus 70 ~~~~~~-~~~ls~~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~~~~ 148 (373)
T PLN03215 70 SYISRP-GAFLSRAAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVLDWA 148 (373)
T ss_pred cccccc-cceeeeeEEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEEecc
Confidence 000000 000000001111 135688887764 35789999999998877753221110 00000011111 111
Q ss_pred CC--C-CCEEEEEEEEEecccccccccccEEEEEE------cCCCccccccCCccccceeecCCcceEEECceEEEEEee
Q 038188 158 DA--S-GDYKVVFICKLWNEKIQDAYEHAHVAVYT------SSTDSWRVSKGNIKWIPYVFESYYNNANLNGVFYWFVSR 228 (384)
Q Consensus 158 ~~--~-~~ykvv~~~~~~~~~~~~~~~~~~~~vys------s~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~ 228 (384)
.. + -.|+-+.+......+.. ....+.|+. -+.++|+.++.. ...+ ...|+.+|.+|-+..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~---~~~vl~i~~~g~l~~w~~~~Wt~l~~~--~~~~-----~DIi~~kGkfYAvD~- 217 (373)
T PLN03215 149 KRRETRPGYQRSALVKVKEGDNH---RDGVLGIGRDGKINYWDGNVLKALKQM--GYHF-----SDIIVHKGQTYALDS- 217 (373)
T ss_pred cccccccceeEEEEEEeecCCCc---ceEEEEEeecCcEeeecCCeeeEccCC--Ccee-----eEEEEECCEEEEEcC-
Confidence 00 0 01321111111111100 011122221 124788887642 1111 357899999998853
Q ss_pred cCCCCccEEEEEEcCCceeeeecCCC------CCCCCceeEEEECCeEEEEEec--C-------------CCCeEEEEEE
Q 038188 229 AGDFHSKLILLFRISDEEFQEIQRPC------IPYTPFESLAPLNGSIALLHLD--E-------------SNQYIEIWVM 287 (384)
Q Consensus 229 ~~~~~~~~il~fD~~~~~~~~i~~P~------~~~~~~~~l~~~~G~L~l~~~~--~-------------~~~~l~iW~l 287 (384)
.+.+.++|.+-+ .+.+..+. ........|++..|+|++|... . ....++|+.+
T Consensus 218 -----~G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~Vfkl 291 (373)
T PLN03215 218 -----IGIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKF 291 (373)
T ss_pred -----CCeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEE
Confidence 466777774322 12221111 0112456899999999999541 1 1246899999
Q ss_pred cC--CceeEEEEeCCCCcc---ccceEE-------EeCCEEEEEEeCCeEEEEECCCCeEEEEee
Q 038188 288 NE--MNWIQQFAIGPFLGV---KSPCGF-------WKNNAVLMESINGKLLLYDLVVQEMRDLGR 340 (384)
Q Consensus 288 ~~--~~W~~~~~i~~~~~~---~~~~~~-------~~~~~il~~~~~~~l~~yd~~t~~~~~v~~ 340 (384)
+. ..|+++.+++-...+ ...+.+ .+++-|++..... ..+||++.++...+..
T Consensus 292 D~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtdd~~-~~v~~~~dg~~~~~~~ 355 (373)
T PLN03215 292 DDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTEDTM-PKVFKLDNGNGSSIET 355 (373)
T ss_pred cCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEECCCc-ceEEECCCCCccceEe
Confidence 87 899998887632111 011111 1256677775543 8899999998766544
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.09 E-value=1.1e-08 Score=101.37 Aligned_cols=212 Identities=13% Similarity=0.059 Sum_probs=129.7
Q ss_pred eccccceEEEeeC--------CeEEEEccCcccccccCCCCCCCCcccccceeeeEEeeeCCCCCEEEEEEEEEeccccc
Q 038188 106 LGPYDGIFCLCDG--------GLITLWNPATKECRTLPNYKKNLPALATFLKRNAIFGLCDASGDYKVVFICKLWNEKIQ 177 (384)
Q Consensus 106 ~~s~~GLl~~~~~--------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~ 177 (384)
++..+|.|.+..+ +.++..||.+++|..+|+++..... ... ..++ =|+..++...+
T Consensus 299 ~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~-----~~~--~~~~-----g~IYviGG~~~---- 362 (557)
T PHA02713 299 SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCR-----FSL--AVID-----DTIYAIGGQNG---- 362 (557)
T ss_pred EEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhc-----eeE--EEEC-----CEEEEECCcCC----
Confidence 3445666544432 2478999999999999988743110 111 1111 14444432211
Q ss_pred ccccccEEEEEEcCCCccccccCCccccceeecCCcceEEECceEEEEEeecCC------------------CCccEEEE
Q 038188 178 DAYEHAHVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNANLNGVFYWFVSRAGD------------------FHSKLILL 239 (384)
Q Consensus 178 ~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~------------------~~~~~il~ 239 (384)
......++.|++.+++|+.+..++... .....+.++|.+|.+++.... .....+.+
T Consensus 363 -~~~~~sve~Ydp~~~~W~~~~~mp~~r-----~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~ 436 (557)
T PHA02713 363 -TNVERTIECYTMGDDKWKMLPDMPIAL-----SSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIR 436 (557)
T ss_pred -CCCCceEEEEECCCCeEEECCCCCccc-----ccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEE
Confidence 111457999999999999987653222 123567889999999864211 01356899
Q ss_pred EEcCCceeeee-cCCCCCCCCceeEEEECCeEEEEEecCCCC-eE-EEEEEcC---CceeEEEEeCCCCccccceEEEeC
Q 038188 240 FRISDEEFQEI-QRPCIPYTPFESLAPLNGSIALLHLDESNQ-YI-EIWVMNE---MNWIQQFAIGPFLGVKSPCGFWKN 313 (384)
Q Consensus 240 fD~~~~~~~~i-~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~-~l-~iW~l~~---~~W~~~~~i~~~~~~~~~~~~~~~ 313 (384)
||+.+++|+.+ ++|... ....+++.+|+||++....... .. .+...+- ..|+.+..++ .+.....+.+. +
T Consensus 437 YDP~td~W~~v~~m~~~r--~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~-~~r~~~~~~~~-~ 512 (557)
T PHA02713 437 YDTVNNIWETLPNFWTGT--IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE-SRLSALHTILH-D 512 (557)
T ss_pred ECCCCCeEeecCCCCccc--ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC-cccccceeEEE-C
Confidence 99999999987 444332 3446788999999996432111 11 2344443 4799876552 22122223333 7
Q ss_pred CEEEEEEe-CC--eEEEEECCCCeEEEEeeccC
Q 038188 314 NAVLMESI-NG--KLLLYDLVVQEMRDLGRFSS 343 (384)
Q Consensus 314 ~~il~~~~-~~--~l~~yd~~t~~~~~v~~~~~ 343 (384)
++|++..+ ++ .+-.||++|++|..+..+..
T Consensus 513 ~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 513 NTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred CEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence 78877654 22 48899999999998876543
No 6
>PHA02713 hypothetical protein; Provisional
Probab=99.01 E-value=3.4e-08 Score=97.90 Aligned_cols=220 Identities=10% Similarity=0.061 Sum_probs=129.7
Q ss_pred eEEEEccCcccccccCCCCCCCCcccccceeeeEEeeeCCCCCEEEEEEEEEecccccccccccEEEEEEcCCCcccccc
Q 038188 120 LITLWNPATKECRTLPNYKKNLPALATFLKRNAIFGLCDASGDYKVVFICKLWNEKIQDAYEHAHVAVYTSSTDSWRVSK 199 (384)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 199 (384)
.+..+||.|++|..++++|.... ..+.+. . +. +|..++..... ......++.|++.++.|..+.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~--------~~~~a~--l-~~-~IYviGG~~~~----~~~~~~v~~Yd~~~n~W~~~~ 336 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHII--------NYASAI--V-DN-EIIIAGGYNFN----NPSLNKVYKINIENKIHVELP 336 (557)
T ss_pred CEEEEeCCCCeEEECCCCCcccc--------ceEEEE--E-CC-EEEEEcCCCCC----CCccceEEEEECCCCeEeeCC
Confidence 46788999999999988775311 111110 0 11 34444221100 111467899999999999887
Q ss_pred CCccccceeecCCcceEEECceEEEEEeecCCCCccEEEEEEcCCceeeee-cCCCCCCCCceeEEEECCeEEEEEecCC
Q 038188 200 GNIKWIPYVFESYYNNANLNGVFYWFVSRAGDFHSKLILLFRISDEEFQEI-QRPCIPYTPFESLAPLNGSIALLHLDES 278 (384)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~l~~~~G~L~l~~~~~~ 278 (384)
.++.. ......+.++|.+|-+++..+......+-+||+.+++|+.+ ++|... .....+.++|+||++.....
T Consensus 337 ~m~~~-----R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r--~~~~~~~~~g~IYviGG~~~ 409 (557)
T PHA02713 337 PMIKN-----RCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIAL--SSYGMCVLDQYIYIIGGRTE 409 (557)
T ss_pred CCcch-----hhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccc--ccccEEEECCEEEEEeCCCc
Confidence 55322 12235788999999999754333345789999999999987 445433 33456788999999954321
Q ss_pred CC-------------------eEEEEEEcC--CceeEEEEeCCCCccccceEEEeCCEEEEEEeC-------CeEEEEEC
Q 038188 279 NQ-------------------YIEIWVMNE--MNWIQQFAIGPFLGVKSPCGFWKNNAVLMESIN-------GKLLLYDL 330 (384)
Q Consensus 279 ~~-------------------~l~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~-------~~l~~yd~ 330 (384)
.. .-.+...+- ..|..+..+.. +.....+. .-+++|++..+. ..+..||+
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~-~r~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp 487 (557)
T PHA02713 410 HIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT-GTIRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNT 487 (557)
T ss_pred ccccccccccccccccccccccceEEEECCCCCeEeecCCCCc-ccccCcEE-EECCEEEEEeCCCCCCccceeEEEecC
Confidence 10 123444443 78987554321 11222233 337788766432 23679999
Q ss_pred CC-CeEEEEeeccCCCCcceEEEEEEeccceeCCCCC
Q 038188 331 VV-QEMRDLGRFSSGELGAAILIYCYKESLIRLKGEE 366 (384)
Q Consensus 331 ~t-~~~~~v~~~~~~~~~~~~~~~~y~~sL~~~~~~~ 366 (384)
++ ++|+.+.....+- ....+..+-..+--+.+.+
T Consensus 488 ~~~~~W~~~~~m~~~r--~~~~~~~~~~~iyv~Gg~~ 522 (557)
T PHA02713 488 NTYNGWELITTTESRL--SALHTILHDNTIMMLHCYE 522 (557)
T ss_pred CCCCCeeEccccCccc--ccceeEEECCEEEEEeeec
Confidence 99 8999886543321 2333444444444455433
No 7
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.00 E-value=1.9e-07 Score=92.39 Aligned_cols=210 Identities=14% Similarity=0.121 Sum_probs=135.0
Q ss_pred eeeccccceEEEeeC--------CeEEEEccCcccccccCCCCCCCCcccccceeeeEEeeeCCCCCEEEEEEEEEeccc
Q 038188 104 ELLGPYDGIFCLCDG--------GLITLWNPATKECRTLPNYKKNLPALATFLKRNAIFGLCDASGDYKVVFICKLWNEK 175 (384)
Q Consensus 104 ~~~~s~~GLl~~~~~--------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~ 175 (384)
.-++..+|.|-...+ +.....||.|++|..+|++...+ ...+.+ .. ..++..+....+.
T Consensus 326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R--------~~~~v~--~l--~g~iYavGG~dg~- 392 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKR--------SDFGVA--VL--DGKLYAVGGFDGE- 392 (571)
T ss_pred ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcc--------ccceeE--EE--CCEEEEEeccccc-
Confidence 344556676655432 36799999999999999987542 111111 11 2344444332222
Q ss_pred ccccccccEEEEEEcCCCccccccCCccccceeecCCcceEEECceEEEEEeecCCC-CccEEEEEEcCCceeeee-cCC
Q 038188 176 IQDAYEHAHVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNANLNGVFYWFVSRAGDF-HSKLILLFRISDEEFQEI-QRP 253 (384)
Q Consensus 176 ~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~~il~fD~~~~~~~~i-~~P 253 (384)
.....+|.|++.++.|..+..+... ......+.++|.+|-+.+..+.. .-..+-+||+.+++|+.+ +++
T Consensus 393 ----~~l~svE~YDp~~~~W~~va~m~~~-----r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~ 463 (571)
T KOG4441|consen 393 ----KSLNSVECYDPVTNKWTPVAPMLTR-----RSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN 463 (571)
T ss_pred ----cccccEEEecCCCCcccccCCCCcc-----eeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcc
Confidence 2256899999999999999866321 12235788999999999865444 568999999999999987 555
Q ss_pred CCCCCCceeEEEECCeEEEEEecCCC---CeEEEEEEcCCceeEEEEeCCCCccccceEE-EeCCEEEEEEe------CC
Q 038188 254 CIPYTPFESLAPLNGSIALLHLDESN---QYIEIWVMNEMNWIQQFAIGPFLGVKSPCGF-WKNNAVLMESI------NG 323 (384)
Q Consensus 254 ~~~~~~~~~l~~~~G~L~l~~~~~~~---~~l~iW~l~~~~W~~~~~i~~~~~~~~~~~~-~~~~~il~~~~------~~ 323 (384)
... ....+++++|+||++...+.. ..++..--+...|..+..+... ....++ .-++++++..+ -.
T Consensus 464 ~~R--~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~---rs~~g~~~~~~~ly~vGG~~~~~~l~ 538 (571)
T KOG4441|consen 464 TRR--SGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP---RSAVGVVVLGGKLYAVGGFDGNNNLN 538 (571)
T ss_pred ccc--ccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccc---cccccEEEECCEEEEEecccCccccc
Confidence 443 334588999999999553322 2223232222889997433221 122222 23667766643 13
Q ss_pred eEEEEECCCCeEEEEee
Q 038188 324 KLLLYDLVVQEMRDLGR 340 (384)
Q Consensus 324 ~l~~yd~~t~~~~~v~~ 340 (384)
.+-.||+++++|+.+..
T Consensus 539 ~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 539 TVECYDPETDTWTEVTE 555 (571)
T ss_pred eeEEcCCCCCceeeCCC
Confidence 58999999999998765
No 8
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.97 E-value=5.2e-10 Score=71.86 Aligned_cols=42 Identities=29% Similarity=0.615 Sum_probs=36.0
Q ss_pred cCCCCHHHHHHHHccCChhhhhhhhcccHhhHhhcCChHhHH
Q 038188 11 SMLMPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENPKFIS 52 (384)
Q Consensus 11 ~~~LP~dll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~F~~ 52 (384)
+..||+|++.+||++||++++.++.+|||+|+.++.++.+-+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 468999999999999999999999999999999998875433
No 9
>PLN02153 epithiospecifier protein
Probab=98.91 E-value=3.6e-07 Score=85.42 Aligned_cols=210 Identities=11% Similarity=0.055 Sum_probs=118.7
Q ss_pred CeEEEEccCcccccccCCCCCCCCcccccceeeeEEeeeCCCCCEEEEEEEEEecccccccccccEEEEEEcCCCccccc
Q 038188 119 GLITLWNPATKECRTLPNYKKNLPALATFLKRNAIFGLCDASGDYKVVFICKLWNEKIQDAYEHAHVAVYTSSTDSWRVS 198 (384)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~ 198 (384)
+.++++||.+.+|..+|+....... ...+++..... =+++.+...... .....+++|+..+++|+.+
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~------~~~~~~~~~~~--~~iyv~GG~~~~-----~~~~~v~~yd~~t~~W~~~ 116 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRI------SCLGVRMVAVG--TKLYIFGGRDEK-----REFSDFYSYDTVKNEWTFL 116 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCC------ccCceEEEEEC--CEEEEECCCCCC-----CccCcEEEEECCCCEEEEe
Confidence 3689999999999998865421110 00111111111 134444221111 1135789999999999987
Q ss_pred cCCccc-cceeecCCcceEEECceEEEEEeecCCC------CccEEEEEEcCCceeeeecCCCC--CCCCceeEEEECCe
Q 038188 199 KGNIKW-IPYVFESYYNNANLNGVFYWFVSRAGDF------HSKLILLFRISDEEFQEIQRPCI--PYTPFESLAPLNGS 269 (384)
Q Consensus 199 ~~~~~~-~~~~~~~~~~~v~~~G~lywl~~~~~~~------~~~~il~fD~~~~~~~~i~~P~~--~~~~~~~l~~~~G~ 269 (384)
..+... .|. ......++..+|.+|.+....... .-..+.+||+.+.+|..++.+.. .......++..+|+
T Consensus 117 ~~~~~~~~p~-~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~ 195 (341)
T PLN02153 117 TKLDEEGGPE-ARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGK 195 (341)
T ss_pred ccCCCCCCCC-CceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCe
Confidence 643110 011 111234677899999988642110 12468899999999998754321 11223346678999
Q ss_pred EEEEEecC---------CCCeEEEEEEcC--CceeEEEEeC--CCCccccceEEEeCCEEEEEEeC--------------
Q 038188 270 IALLHLDE---------SNQYIEIWVMNE--MNWIQQFAIG--PFLGVKSPCGFWKNNAVLMESIN-------------- 322 (384)
Q Consensus 270 L~l~~~~~---------~~~~l~iW~l~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~il~~~~~-------------- 322 (384)
|+++.... ....-++++++- .+|+++.... |.+....... .-+++|++..+.
T Consensus 196 iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~ 274 (341)
T PLN02153 196 IWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHA-VVGKYIIIFGGEVWPDLKGHLGPGTL 274 (341)
T ss_pred EEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeE-EECCEEEEECcccCCccccccccccc
Confidence 99984211 001124666654 8899976543 2221112222 235677655331
Q ss_pred -CeEEEEECCCCeEEEEeeccC
Q 038188 323 -GKLLLYDLVVQEMRDLGRFSS 343 (384)
Q Consensus 323 -~~l~~yd~~t~~~~~v~~~~~ 343 (384)
..++.||+++++|+.+...+.
T Consensus 275 ~n~v~~~d~~~~~W~~~~~~~~ 296 (341)
T PLN02153 275 SNEGYALDTETLVWEKLGECGE 296 (341)
T ss_pred cccEEEEEcCccEEEeccCCCC
Confidence 258999999999999875433
No 10
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.87 E-value=2.6e-07 Score=91.44 Aligned_cols=198 Identities=12% Similarity=0.117 Sum_probs=130.3
Q ss_pred CeEEEEccCcccccccCCCCCCCCcccccceeeeEEeeeCCCCCEEEEEEEEEecccccccccccEEEEEEcCCCccccc
Q 038188 119 GLITLWNPATKECRTLPNYKKNLPALATFLKRNAIFGLCDASGDYKVVFICKLWNEKIQDAYEHAHVAVYTSSTDSWRVS 198 (384)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~ 198 (384)
+.+...||.+++|..+.+++.... ..+.+.- .+ +|..++.... +......++.|+++++.|..+
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~--------~~~~~~~--~~--~lYv~GG~~~----~~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRC--------RVGVAVL--NG--KLYVVGGYDS----GSDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccc--------cccEEEE--CC--EEEEEccccC----CCcccceEEEecCCCCceecc
Confidence 356788999999999998885422 1111111 11 4444432221 122368899999999999998
Q ss_pred cCCccccceeecCCcceEEECceEEEEEeecCCCCccEEEEEEcCCceeeeec-CCCCCCCCceeEEEECCeEEEEEecC
Q 038188 199 KGNIKWIPYVFESYYNNANLNGVFYWFVSRAGDFHSKLILLFRISDEEFQEIQ-RPCIPYTPFESLAPLNGSIALLHLDE 277 (384)
Q Consensus 199 ~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~~~~~~i~-~P~~~~~~~~~l~~~~G~L~l~~~~~ 277 (384)
..+.... .....+.++|.+|-+.+..+...-..+-.||+.+++|+.+. ++.. ......++.+|+||++...+
T Consensus 365 a~M~~~R-----~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~--r~~~gv~~~~g~iYi~GG~~ 437 (571)
T KOG4441|consen 365 APMNTKR-----SDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR--RSGHGVAVLGGKLYIIGGGD 437 (571)
T ss_pred CCccCcc-----ccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcc--eeeeEEEEECCEEEEEcCcC
Confidence 7663222 22357889999999999876666788999999999999874 5542 34557788999999996533
Q ss_pred CCC----eEEEEEEcCCceeEEEEeCCCCccccceEEEeCCEEEEEEeC------CeEEEEECCCCeEEEEeec
Q 038188 278 SNQ----YIEIWVMNEMNWIQQFAIGPFLGVKSPCGFWKNNAVLMESIN------GKLLLYDLVVQEMRDLGRF 341 (384)
Q Consensus 278 ~~~----~l~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~------~~l~~yd~~t~~~~~v~~~ 341 (384)
... .++.+--....|..+..+.-.. ....+++. ++.|+...+. ..+-.||+++++|..+...
T Consensus 438 ~~~~~l~sve~YDP~t~~W~~~~~M~~~R-~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m 509 (571)
T KOG4441|consen 438 GSSNCLNSVECYDPETNTWTLIAPMNTRR-SGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM 509 (571)
T ss_pred CCccccceEEEEcCCCCceeecCCccccc-ccceEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEcccC
Confidence 222 2222222227899866543211 22334444 7788777542 2378899999999998653
No 11
>PHA03098 kelch-like protein; Provisional
Probab=98.85 E-value=3.9e-07 Score=90.57 Aligned_cols=195 Identities=14% Similarity=0.158 Sum_probs=120.2
Q ss_pred eEEEEccCcccccccCCCCCCCCcccccceeeeEEeeeCCCCCEEEEEEEEEecccccccccccEEEEEEcCCCcccccc
Q 038188 120 LITLWNPATKECRTLPNYKKNLPALATFLKRNAIFGLCDASGDYKVVFICKLWNEKIQDAYEHAHVAVYTSSTDSWRVSK 199 (384)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 199 (384)
.++.+||.|++|..+|+++.... . .... ..+ . ++..++.... ......+++|+..+++|+...
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~--~---~~~~--~~~----~-~lyv~GG~~~-----~~~~~~v~~yd~~~~~W~~~~ 374 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRK--N---PGVT--VFN----N-RIYVIGGIYN-----SISLNTVESWKPGESKWREEP 374 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccc--c---ceEE--EEC----C-EEEEEeCCCC-----CEecceEEEEcCCCCceeeCC
Confidence 68999999999999998764311 0 1111 111 1 2333322111 112467899999999999876
Q ss_pred CCccccceeecCCcceEEECceEEEEEeecC-CCCccEEEEEEcCCceeeee-cCCCCCCCCceeEEEECCeEEEEEecC
Q 038188 200 GNIKWIPYVFESYYNNANLNGVFYWFVSRAG-DFHSKLILLFRISDEEFQEI-QRPCIPYTPFESLAPLNGSIALLHLDE 277 (384)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~l~~~~G~L~l~~~~~ 277 (384)
.++. | .....++.++|.+|-+.+... ......+..||+.+++|+.+ ++|... .....+..+|+|+++....
T Consensus 375 ~lp~--~---r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~ 447 (534)
T PHA03098 375 PLIF--P---RYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH--YGGCAIYHDGKIYVIGGIS 447 (534)
T ss_pred CcCc--C---CccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc--cCceEEEECCEEEEECCcc
Confidence 5532 1 122356778999999987421 12246789999999999987 445433 2334567899999985321
Q ss_pred CCC----eEEEEEEcC--CceeEEEEeCCCCccccceEEEeCCEEEEEEe------CCeEEEEECCCCeEEEEee
Q 038188 278 SNQ----YIEIWVMNE--MNWIQQFAIGPFLGVKSPCGFWKNNAVLMESI------NGKLLLYDLVVQEMRDLGR 340 (384)
Q Consensus 278 ~~~----~l~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~------~~~l~~yd~~t~~~~~v~~ 340 (384)
... .-.+|..+- ..|..+..+. .+.......+. +++|++..+ ...+..||+++++|+.+..
T Consensus 448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTNKWTELSSLN-FPRINASLCIF-NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred CCCCCcccceEEEecCCCCceeeCCCCC-cccccceEEEE-CCEEEEEcCCcCCcccceeEEEeCCCCEEEecCC
Confidence 111 223777765 7899865432 22122222333 677766643 2368999999999988764
No 12
>PLN02193 nitrile-specifier protein
Probab=98.85 E-value=5.2e-07 Score=87.87 Aligned_cols=207 Identities=11% Similarity=0.083 Sum_probs=121.5
Q ss_pred eEEEEccCcccccccCCCCCCCCcccccceeeeEEeeeCCCCCEEEEEEEEEecccccccccccEEEEEEcCCCcccccc
Q 038188 120 LITLWNPATKECRTLPNYKKNLPALATFLKRNAIFGLCDASGDYKVVFICKLWNEKIQDAYEHAHVAVYTSSTDSWRVSK 199 (384)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 199 (384)
.++++||.+.+|..+|+....+.... ..... ..++ . ++..+...... .....+++|++.+++|+.+.
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~-~~~~~--v~~~----~-~lYvfGG~~~~-----~~~ndv~~yD~~t~~W~~l~ 260 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSC-LGVRM--VSIG----S-TLYVFGGRDAS-----RQYNGFYSFDTTTNEWKLLT 260 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcc-cceEE--EEEC----C-EEEEECCCCCC-----CCCccEEEEECCCCEEEEcC
Confidence 58999999999998775421110000 00011 1111 1 23333211111 11457899999999999886
Q ss_pred CCccccceeecCCcceEEECceEEEEEeecCCCCccEEEEEEcCCceeeeecCCCCC--CCCceeEEEECCeEEEEEecC
Q 038188 200 GNIKWIPYVFESYYNNANLNGVFYWFVSRAGDFHSKLILLFRISDEEFQEIQRPCIP--YTPFESLAPLNGSIALLHLDE 277 (384)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~--~~~~~~l~~~~G~L~l~~~~~ 277 (384)
.+.. .|. .......+..++.+|.+...........+.+||+.+.+|+.++.|... ......++..+|+++++.-..
T Consensus 261 ~~~~-~P~-~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~ 338 (470)
T PLN02193 261 PVEE-GPT-PRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFN 338 (470)
T ss_pred cCCC-CCC-CccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCC
Confidence 5411 111 111234567899999998753333346788999999999988654322 122345667899999985432
Q ss_pred CCCeEEEEEEcC--CceeEEEEeC--CCCccccceEEEeCCEEEEEEeC---------------CeEEEEECCCCeEEEE
Q 038188 278 SNQYIEIWVMNE--MNWIQQFAIG--PFLGVKSPCGFWKNNAVLMESIN---------------GKLLLYDLVVQEMRDL 338 (384)
Q Consensus 278 ~~~~l~iW~l~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~il~~~~~---------------~~l~~yd~~t~~~~~v 338 (384)
....-++|+++- .+|.++.... |.+....... .-+++|++..+. ..++.||++|++|+.+
T Consensus 339 g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 339 GCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred CCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence 222346777765 7899976543 2221222222 236677655331 2489999999999998
Q ss_pred eecc
Q 038188 339 GRFS 342 (384)
Q Consensus 339 ~~~~ 342 (384)
...+
T Consensus 418 ~~~~ 421 (470)
T PLN02193 418 DKFG 421 (470)
T ss_pred ccCC
Confidence 7543
No 13
>PHA02790 Kelch-like protein; Provisional
Probab=98.84 E-value=5.1e-07 Score=88.17 Aligned_cols=184 Identities=10% Similarity=0.020 Sum_probs=114.9
Q ss_pred eEEEEccCcccccccCCCCCCCCcccccceeeeEEeeeCCCCCEEEEEEEEEecccccccccccEEEEEEcCCCcccccc
Q 038188 120 LITLWNPATKECRTLPNYKKNLPALATFLKRNAIFGLCDASGDYKVVFICKLWNEKIQDAYEHAHVAVYTSSTDSWRVSK 199 (384)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 199 (384)
....+||.+++|..+|+++..... ... ...+ =++..++.. .. ...++.|+..+++|..+.
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~-----~~~--v~~~-----~~iYviGG~---~~-----~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLY-----ASG--VPAN-----NKLYVVGGL---PN-----PTSVERWFHGDAAWVNMP 347 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhc-----ceE--EEEC-----CEEEEECCc---CC-----CCceEEEECCCCeEEECC
Confidence 567789999999999988643110 111 1111 134444221 10 345899999999999887
Q ss_pred CCccccceeecCCcceEEECceEEEEEeecCCCCccEEEEEEcCCceeeeecCCCCCCCCceeEEEECCeEEEEEecCCC
Q 038188 200 GNIKWIPYVFESYYNNANLNGVFYWFVSRAGDFHSKLILLFRISDEEFQEIQRPCIPYTPFESLAPLNGSIALLHLDESN 279 (384)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~ 279 (384)
.++... ....++.++|.+|-+++... ....+..||+.+++|+.++.+... ......++.+|+||++..
T Consensus 348 ~l~~~r-----~~~~~~~~~g~IYviGG~~~--~~~~ve~ydp~~~~W~~~~~m~~~-r~~~~~~~~~~~IYv~GG---- 415 (480)
T PHA02790 348 SLLKPR-----CNPAVASINNVIYVIGGHSE--TDTTTEYLLPNHDQWQFGPSTYYP-HYKSCALVFGRRLFLVGR---- 415 (480)
T ss_pred CCCCCC-----cccEEEEECCEEEEecCcCC--CCccEEEEeCCCCEEEeCCCCCCc-cccceEEEECCEEEEECC----
Confidence 553221 22357889999999987431 235678999999999987443222 123456788999999862
Q ss_pred CeEEEEEEcCCceeEEEEeCCCCccccceEEEeCCEEEEEEeC------CeEEEEECCCCeEEEE
Q 038188 280 QYIEIWVMNEMNWIQQFAIGPFLGVKSPCGFWKNNAVLMESIN------GKLLLYDLVVQEMRDL 338 (384)
Q Consensus 280 ~~l~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~------~~l~~yd~~t~~~~~v 338 (384)
..+++-.+...|+.+..+ +.+.......+ -+++|++..+. ..+-.||+++++|+..
T Consensus 416 -~~e~ydp~~~~W~~~~~m-~~~r~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 416 -NAEFYCESSNTWTLIDDP-IYPRDNPELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred -ceEEecCCCCcEeEcCCC-CCCccccEEEE-ECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 234443344889986543 22212222333 37788776441 3588999999999754
No 14
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.84 E-value=1.7e-09 Score=69.87 Aligned_cols=45 Identities=36% Similarity=0.603 Sum_probs=37.9
Q ss_pred ccCCCCHHHHHHHHccCChhhhhhhhcccHhhHhhcCChHhHHHH
Q 038188 10 SSMLMPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENPKFISKH 54 (384)
Q Consensus 10 ~~~~LP~dll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~F~~~~ 54 (384)
++..||+|++.+||.+|+++++.+++.|||.|++++.++.+-..+
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 356799999999999999999999999999999999999876554
No 15
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.76 E-value=5e-09 Score=65.17 Aligned_cols=39 Identities=44% Similarity=0.805 Sum_probs=36.5
Q ss_pred CCHHHHHHHHccCChhhhhhhhcccHhhHhhcCChHhHH
Q 038188 14 MPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENPKFIS 52 (384)
Q Consensus 14 LP~dll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~F~~ 52 (384)
||+|++.+||.+|+++++.++++|||+|+.++.++.|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999887643
No 16
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.70 E-value=4.5e-06 Score=77.43 Aligned_cols=179 Identities=13% Similarity=0.129 Sum_probs=107.6
Q ss_pred ccEEEEEEcCCCcc----ccccCCccccceeecCCcceEEECceEEEEEeecCCCCccEEEEEEcCCceeeeec-CCCCC
Q 038188 182 HAHVAVYTSSTDSW----RVSKGNIKWIPYVFESYYNNANLNGVFYWFVSRAGDFHSKLILLFRISDEEFQEIQ-RPCIP 256 (384)
Q Consensus 182 ~~~~~vyss~t~~W----~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~~~~~~i~-~P~~~ 256 (384)
...++.|+..++.| +....+ |... ....++.++|.+|.+...........+.+||+.+++|+.++ +|...
T Consensus 87 ~~~v~~~d~~~~~w~~~~~~~~~l----p~~~-~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~ 161 (323)
T TIGR03548 87 FSSVYRITLDESKEELICETIGNL----PFTF-ENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP 161 (323)
T ss_pred ceeEEEEEEcCCceeeeeeEcCCC----CcCc-cCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC
Confidence 46788999999998 444333 3211 22356788999999987432233568999999999999884 56432
Q ss_pred CCCceeEEEECCeEEEEEecCCCCeEEEEEEcC--CceeEEEEeC--CCCc--cccceEEEeCCEEEEEEe---------
Q 038188 257 YTPFESLAPLNGSIALLHLDESNQYIEIWVMNE--MNWIQQFAIG--PFLG--VKSPCGFWKNNAVLMESI--------- 321 (384)
Q Consensus 257 ~~~~~~l~~~~G~L~l~~~~~~~~~l~iW~l~~--~~W~~~~~i~--~~~~--~~~~~~~~~~~~il~~~~--------- 321 (384)
......+..+|+|+++.-.......++|..+- .+|.++..+. +.+. ......+..+++|++..+
T Consensus 162 -r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~ 240 (323)
T TIGR03548 162 -RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDA 240 (323)
T ss_pred -CCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHH
Confidence 22335567899999996433223456677765 7898865431 1110 011111223567765532
Q ss_pred -----------------------------CCeEEEEECCCCeEEEEeeccCCCCcceEEEEEEeccceeCCCCCc
Q 038188 322 -----------------------------NGKLLLYDLVVQEMRDLGRFSSGELGAAILIYCYKESLIRLKGEEE 367 (384)
Q Consensus 322 -----------------------------~~~l~~yd~~t~~~~~v~~~~~~~~~~~~~~~~y~~sL~~~~~~~~ 367 (384)
...+..||+++++|+.+...... ......++..-..|.-+.+..+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-~r~~~~~~~~~~~iyv~GG~~~ 314 (323)
T TIGR03548 241 VIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFF-ARCGAALLLTGNNIFSINGELK 314 (323)
T ss_pred HhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccccc-ccCchheEEECCEEEEEecccc
Confidence 13599999999999988742211 0022234555556655555433
No 17
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.65 E-value=9.3e-06 Score=76.13 Aligned_cols=240 Identities=13% Similarity=0.140 Sum_probs=129.4
Q ss_pred cccceEEEee---CCeEEEEcc--CcccccccCCCCCCCCcccccceeeeEEeeeCCCCCEEEEEEEEEecccccc-ccc
Q 038188 108 PYDGIFCLCD---GGLITLWNP--ATKECRTLPNYKKNLPALATFLKRNAIFGLCDASGDYKVVFICKLWNEKIQD-AYE 181 (384)
Q Consensus 108 s~~GLl~~~~---~~~~~V~NP--~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~-~~~ 181 (384)
..++-|.+.. .+.+++.++ .+++|..+|+++... + ...+...- .+ +|..+.......... ...
T Consensus 15 ~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~-R------~~~~~~~~--~~--~iYv~GG~~~~~~~~~~~~ 83 (346)
T TIGR03547 15 IIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGP-R------NQAVAAAI--DG--KLYVFGGIGKANSEGSPQV 83 (346)
T ss_pred EECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCC-c------ccceEEEE--CC--EEEEEeCCCCCCCCCccee
Confidence 3445554433 246778774 788999999876311 0 11111110 11 344433211100000 001
Q ss_pred ccEEEEEEcCCCccccccCCccccceeecCCcceE-EECceEEEEEeecCCC----------------------------
Q 038188 182 HAHVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNA-NLNGVFYWFVSRAGDF---------------------------- 232 (384)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v-~~~G~lywl~~~~~~~---------------------------- 232 (384)
...++.|++.+++|+.+... .|... ....++ .++|.+|-+.......
T Consensus 84 ~~~v~~Yd~~~~~W~~~~~~---~p~~~-~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (346)
T TIGR03547 84 FDDVYRYDPKKNSWQKLDTR---SPVGL-LGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQ 159 (346)
T ss_pred cccEEEEECCCCEEecCCCC---CCCcc-cceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCC
Confidence 35799999999999998631 12111 111223 5799999988642100
Q ss_pred ------CccEEEEEEcCCceeeee-cCCCCCCCCceeEEEECCeEEEEEecC--CCCeEEEEEEc--C--CceeEEEEeC
Q 038188 233 ------HSKLILLFRISDEEFQEI-QRPCIPYTPFESLAPLNGSIALLHLDE--SNQYIEIWVMN--E--MNWIQQFAIG 299 (384)
Q Consensus 233 ------~~~~il~fD~~~~~~~~i-~~P~~~~~~~~~l~~~~G~L~l~~~~~--~~~~l~iW~l~--~--~~W~~~~~i~ 299 (384)
....+.+||+.+++|+.+ ++|... .....++..+|+|+++.... .....++|..+ . ..|..+..+.
T Consensus 160 ~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~ 238 (346)
T TIGR03547 160 PPEDYFWNKNVLSYDPSTNQWRNLGENPFLG-TAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLP 238 (346)
T ss_pred ChhHcCccceEEEEECCCCceeECccCCCCc-CCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCC
Confidence 025799999999999987 445322 23345678899999995422 11234566543 2 5899866542
Q ss_pred CCCcc------ccceEEEeCCEEEEEEeC-----------------------CeEEEEECCCCeEEEEeeccCCCCcceE
Q 038188 300 PFLGV------KSPCGFWKNNAVLMESIN-----------------------GKLLLYDLVVQEMRDLGRFSSGELGAAI 350 (384)
Q Consensus 300 ~~~~~------~~~~~~~~~~~il~~~~~-----------------------~~l~~yd~~t~~~~~v~~~~~~~~~~~~ 350 (384)
.+.. .....+.-+++|++..+. ..+-.||+++++|+.+.....+. ...
T Consensus 239 -~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~--~~~ 315 (346)
T TIGR03547 239 -PPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGL--AYG 315 (346)
T ss_pred -CCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCc--eee
Confidence 1111 011122347788766432 13568999999999886543331 222
Q ss_pred EEEEEeccceeCCCCC
Q 038188 351 LIYCYKESLIRLKGEE 366 (384)
Q Consensus 351 ~~~~y~~sL~~~~~~~ 366 (384)
.+...-..|.-+.+..
T Consensus 316 ~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 316 VSVSWNNGVLLIGGEN 331 (346)
T ss_pred EEEEcCCEEEEEeccC
Confidence 2333445555555443
No 18
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.52 E-value=2.2e-05 Score=74.44 Aligned_cols=240 Identities=14% Similarity=0.157 Sum_probs=128.3
Q ss_pred ccccceEEEee---CCeEEEEccC--cccccccCCCCCCCCcccccceeeeEEeeeCCCCCEEEEEEEEEecccccc-cc
Q 038188 107 GPYDGIFCLCD---GGLITLWNPA--TKECRTLPNYKKNLPALATFLKRNAIFGLCDASGDYKVVFICKLWNEKIQD-AY 180 (384)
Q Consensus 107 ~s~~GLl~~~~---~~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~-~~ 180 (384)
+..++-|.+.. .+.+++.++. +++|..+|+.+.....+ .... ..+ + ++..+.......... ..
T Consensus 35 ~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~----~~~v--~~~---~--~IYV~GG~~~~~~~~~~~ 103 (376)
T PRK14131 35 AIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQ----AVAA--FID---G--KLYVFGGIGKTNSEGSPQ 103 (376)
T ss_pred EEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCccc----ceEE--EEC---C--EEEEEcCCCCCCCCCcee
Confidence 34566655543 2457788765 58899998765321000 1111 111 1 222222111000000 01
Q ss_pred cccEEEEEEcCCCccccccCCccccceeecCCcceEE-ECceEEEEEeecCC----------------------------
Q 038188 181 EHAHVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNAN-LNGVFYWFVSRAGD---------------------------- 231 (384)
Q Consensus 181 ~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~-~~G~lywl~~~~~~---------------------------- 231 (384)
....++.|+..+++|+.+... .|... ....++. .+|.+|.+.+....
T Consensus 104 ~~~~v~~YD~~~n~W~~~~~~---~p~~~-~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~ 179 (376)
T PRK14131 104 VFDDVYKYDPKTNSWQKLDTR---SPVGL-AGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFD 179 (376)
T ss_pred EcccEEEEeCCCCEEEeCCCC---CCCcc-cceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhc
Confidence 135799999999999998632 12211 1112344 79999999864210
Q ss_pred ------CCccEEEEEEcCCceeeeec-CCCCCCCCceeEEEECCeEEEEEec--CCCCeEEEEEEc--C--CceeEEEEe
Q 038188 232 ------FHSKLILLFRISDEEFQEIQ-RPCIPYTPFESLAPLNGSIALLHLD--ESNQYIEIWVMN--E--MNWIQQFAI 298 (384)
Q Consensus 232 ------~~~~~il~fD~~~~~~~~i~-~P~~~~~~~~~l~~~~G~L~l~~~~--~~~~~l~iW~l~--~--~~W~~~~~i 298 (384)
.....+..||+.+++|+.+. +|... .....++..+++|+++... ......++|.++ . ..|.++..+
T Consensus 180 ~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~-~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~ 258 (376)
T PRK14131 180 KKPEDYFFNKEVLSYDPSTNQWKNAGESPFLG-TAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDL 258 (376)
T ss_pred CChhhcCcCceEEEEECCCCeeeECCcCCCCC-CCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCC
Confidence 01257999999999999874 55322 2234567789999999542 222445666543 2 789987755
Q ss_pred CCCCc------cccceEEEeCCEEEEEEeCC-----------------------eEEEEECCCCeEEEEeeccCCCCcce
Q 038188 299 GPFLG------VKSPCGFWKNNAVLMESING-----------------------KLLLYDLVVQEMRDLGRFSSGELGAA 349 (384)
Q Consensus 299 ~~~~~------~~~~~~~~~~~~il~~~~~~-----------------------~l~~yd~~t~~~~~v~~~~~~~~~~~ 349 (384)
..... ........-+++|++..+.. .+-.||+++++|+.+.....+- ..
T Consensus 259 p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r--~~ 336 (376)
T PRK14131 259 PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGL--AY 336 (376)
T ss_pred CCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCc--cc
Confidence 32110 01111223467776664311 1347999999999876543331 22
Q ss_pred EEEEEEeccceeCCC
Q 038188 350 ILIYCYKESLIRLKG 364 (384)
Q Consensus 350 ~~~~~y~~sL~~~~~ 364 (384)
...+..-..+.-+.+
T Consensus 337 ~~av~~~~~iyv~GG 351 (376)
T PRK14131 337 GVSVSWNNGVLLIGG 351 (376)
T ss_pred eEEEEeCCEEEEEcC
Confidence 223344445555554
No 19
>PHA03098 kelch-like protein; Provisional
Probab=98.49 E-value=8.5e-06 Score=81.08 Aligned_cols=174 Identities=10% Similarity=0.129 Sum_probs=107.8
Q ss_pred ccEEEEEEcCCCccccccCCccccceeecCCcceEEECceEEEEEeecCCCCccEEEEEEcCCceeeee-cCCCCCCCCc
Q 038188 182 HAHVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNANLNGVFYWFVSRAGDFHSKLILLFRISDEEFQEI-QRPCIPYTPF 260 (384)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~ 260 (384)
...+..|+..+++|.....++.. ......+.++|.+|-+++.........+..||+.+.+|+.+ ++|... ..
T Consensus 310 ~~~v~~yd~~~~~W~~~~~~~~~-----R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r--~~ 382 (534)
T PHA03098 310 VNSVVSYDTKTKSWNKVPELIYP-----RKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPR--YN 382 (534)
T ss_pred eccEEEEeCCCCeeeECCCCCcc-----cccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCC--cc
Confidence 34788999999999887655311 12235778899999998754333356788999999999987 455433 23
Q ss_pred eeEEEECCeEEEEEec--CCCCeEEEEEEcC--CceeEEEEeCCCCccccceEEEeCCEEEEEEeC---------CeEEE
Q 038188 261 ESLAPLNGSIALLHLD--ESNQYIEIWVMNE--MNWIQQFAIGPFLGVKSPCGFWKNNAVLMESIN---------GKLLL 327 (384)
Q Consensus 261 ~~l~~~~G~L~l~~~~--~~~~~l~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~---------~~l~~ 327 (384)
...+..+|+++++... .....-.++.++- .+|.++..+ |.+... ...+..++.|++..+. ..+..
T Consensus 383 ~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~-p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~ 460 (534)
T PHA03098 383 PCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL-PISHYG-GCAIYHDGKIYVIGGISYIDNIKVYNIVES 460 (534)
T ss_pred ceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCC-CccccC-ceEEEECCEEEEECCccCCCCCcccceEEE
Confidence 3457789999998542 1111224555554 789985433 222112 2233346777665431 23899
Q ss_pred EECCCCeEEEEeeccCCCCcceEEEEEEeccceeCCCCC
Q 038188 328 YDLVVQEMRDLGRFSSGELGAAILIYCYKESLIRLKGEE 366 (384)
Q Consensus 328 yd~~t~~~~~v~~~~~~~~~~~~~~~~y~~sL~~~~~~~ 366 (384)
||+++++|+.+.....+- .....+.+-..+.-+.+..
T Consensus 461 yd~~~~~W~~~~~~~~~r--~~~~~~~~~~~iyv~GG~~ 497 (534)
T PHA03098 461 YNPVTNKWTELSSLNFPR--INASLCIFNNKIYVVGGDK 497 (534)
T ss_pred ecCCCCceeeCCCCCccc--ccceEEEECCEEEEEcCCc
Confidence 999999999986533221 2333455555555555443
No 20
>PHA02790 Kelch-like protein; Provisional
Probab=98.42 E-value=2.1e-05 Score=76.96 Aligned_cols=169 Identities=9% Similarity=0.034 Sum_probs=111.2
Q ss_pred ccEEEEEEcCCCccccccCCccccceeecCCcceEEECceEEEEEeecCCCCccEEEEEEcCCceeeee-cCCCCCCCCc
Q 038188 182 HAHVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNANLNGVFYWFVSRAGDFHSKLILLFRISDEEFQEI-QRPCIPYTPF 260 (384)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~~~~~~i-~~P~~~~~~~ 260 (384)
...++.|++.+++|..+..++... .....+.++|.+|-+.+.. ....+-.||+.+++|+.+ ++|... ..
T Consensus 286 ~~~v~~Ydp~~~~W~~~~~m~~~r-----~~~~~v~~~~~iYviGG~~---~~~sve~ydp~~n~W~~~~~l~~~r--~~ 355 (480)
T PHA02790 286 HNNAIAVNYISNNWIPIPPMNSPR-----LYASGVPANNKLYVVGGLP---NPTSVERWFHGDAAWVNMPSLLKPR--CN 355 (480)
T ss_pred CCeEEEEECCCCEEEECCCCCchh-----hcceEEEECCEEEEECCcC---CCCceEEEECCCCeEEECCCCCCCC--cc
Confidence 467889999999999987663221 1134678999999998742 235678999999999987 445332 34
Q ss_pred eeEEEECCeEEEEEecC-CCCeEEEEEEcCCceeEEEEeCCCCccccceEEEeCCEEEEEEeCCeEEEEECCCCeEEEEe
Q 038188 261 ESLAPLNGSIALLHLDE-SNQYIEIWVMNEMNWIQQFAIGPFLGVKSPCGFWKNNAVLMESINGKLLLYDLVVQEMRDLG 339 (384)
Q Consensus 261 ~~l~~~~G~L~l~~~~~-~~~~l~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~~~~v~ 339 (384)
...++.+|+||++.... ....++.|-.+...|..+..++ .+ ......+.-+++|++..+ ..-.||+++++|+.+.
T Consensus 356 ~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~-~~-r~~~~~~~~~~~IYv~GG--~~e~ydp~~~~W~~~~ 431 (480)
T PHA02790 356 PAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY-YP-HYKSCALVFGRRLFLVGR--NAEFYCESSNTWTLID 431 (480)
T ss_pred cEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC-Cc-cccceEEEECCEEEEECC--ceEEecCCCCcEeEcC
Confidence 46788999999995432 2245566644448898854321 12 122233344788877754 3678999999999886
Q ss_pred eccCCCCcceEEEEEEeccceeCCCCC
Q 038188 340 RFSSGELGAAILIYCYKESLIRLKGEE 366 (384)
Q Consensus 340 ~~~~~~~~~~~~~~~y~~sL~~~~~~~ 366 (384)
....+- ....+..+-..+.-+++..
T Consensus 432 ~m~~~r--~~~~~~v~~~~IYviGG~~ 456 (480)
T PHA02790 432 DPIYPR--DNPELIIVDNKLLLIGGFY 456 (480)
T ss_pred CCCCCc--cccEEEEECCEEEEECCcC
Confidence 543321 3445566666666666544
No 21
>PLN02193 nitrile-specifier protein
Probab=98.40 E-value=5.5e-05 Score=73.80 Aligned_cols=179 Identities=14% Similarity=0.157 Sum_probs=104.9
Q ss_pred cEEEEEEcCCCccccccCCccccceeecCCcceEEECceEEEEEeecCCCCccEEEEEEcCCceeeeecC----CCCCCC
Q 038188 183 AHVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNANLNGVFYWFVSRAGDFHSKLILLFRISDEEFQEIQR----PCIPYT 258 (384)
Q Consensus 183 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~~~~~~i~~----P~~~~~ 258 (384)
..+++|+.++++|+.+.... ..|.........+.+++.||-+.........+.+.+||+.+.+|+.+.. |...
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g-~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R-- 269 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATG-DVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPR-- 269 (470)
T ss_pred CcEEEEECCCCEEEeCCCCC-CCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCc--
Confidence 46999999999999764321 1121111123467889999999875433334678999999999998743 2222
Q ss_pred CceeEEEECCeEEEEEecC-CCCeEEEEEEcC--CceeEEEEeC--CCCccccceEEEeCCEEEEEEe-----CCeEEEE
Q 038188 259 PFESLAPLNGSIALLHLDE-SNQYIEIWVMNE--MNWIQQFAIG--PFLGVKSPCGFWKNNAVLMESI-----NGKLLLY 328 (384)
Q Consensus 259 ~~~~l~~~~G~L~l~~~~~-~~~~l~iW~l~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~il~~~~-----~~~l~~y 328 (384)
....++..+++|+++.-.. ....-++|.++- .+|..+.... |.......+.+. +++|++..+ ...+..|
T Consensus 270 ~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~-~gkiyviGG~~g~~~~dv~~y 348 (470)
T PLN02193 270 SFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV-QGKVWVVYGFNGCEVDDVHYY 348 (470)
T ss_pred cceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE-CCcEEEEECCCCCccCceEEE
Confidence 2234566799999984322 112234566654 7898754321 111112223333 556655432 1459999
Q ss_pred ECCCCeEEEEeeccCC-CCcceEEEEEEeccceeCCCC
Q 038188 329 DLVVQEMRDLGRFSSG-ELGAAILIYCYKESLIRLKGE 365 (384)
Q Consensus 329 d~~t~~~~~v~~~~~~-~~~~~~~~~~y~~sL~~~~~~ 365 (384)
|+++++|+.+...+.. ..........+-..+.-+.+.
T Consensus 349 D~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~ 386 (470)
T PLN02193 349 DPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGE 386 (470)
T ss_pred ECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCc
Confidence 9999999998754321 111223344555566655554
No 22
>PLN02153 epithiospecifier protein
Probab=98.39 E-value=9.9e-05 Score=69.03 Aligned_cols=178 Identities=12% Similarity=0.096 Sum_probs=103.8
Q ss_pred cEEEEEEcCCCccccccCCccccceeecCCcceEEECceEEEEEeecCCCCccEEEEEEcCCceeeeec-C-----CCCC
Q 038188 183 AHVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNANLNGVFYWFVSRAGDFHSKLILLFRISDEEFQEIQ-R-----PCIP 256 (384)
Q Consensus 183 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~~~~~~i~-~-----P~~~ 256 (384)
..+++|+..++.|+.+.... ..|.........+.++|.+|-+.+.........+.+||+.+.+|+.++ + |...
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~-~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R 128 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANG-DVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEAR 128 (341)
T ss_pred CcEEEEECCCCEEEEcCccC-CCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCc
Confidence 47899999999999875432 112111112346788999999987532233457899999999999874 2 2221
Q ss_pred CCCceeEEEECCeEEEEEecCCC------Ce-EEEEEEcC--CceeEEEEeC--CCCccccceEEEeCCEEEEEEe----
Q 038188 257 YTPFESLAPLNGSIALLHLDESN------QY-IEIWVMNE--MNWIQQFAIG--PFLGVKSPCGFWKNNAVLMESI---- 321 (384)
Q Consensus 257 ~~~~~~l~~~~G~L~l~~~~~~~------~~-l~iW~l~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~il~~~~---- 321 (384)
.....+..+++|+++.-.... .. -++|+++- .+|..+.... |.......+.+. +++|++..+
T Consensus 129 --~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~ 205 (341)
T PLN02153 129 --TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVV-QGKIWVVYGFATS 205 (341)
T ss_pred --eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEE-CCeEEEEeccccc
Confidence 233456789999998432111 01 24666654 7899865432 111111223333 556654321
Q ss_pred ----------CCeEEEEECCCCeEEEEeeccC-CCCcceEEEEEEeccceeCCC
Q 038188 322 ----------NGKLLLYDLVVQEMRDLGRFSS-GELGAAILIYCYKESLIRLKG 364 (384)
Q Consensus 322 ----------~~~l~~yd~~t~~~~~v~~~~~-~~~~~~~~~~~y~~sL~~~~~ 364 (384)
...+..||+++++|+++...+. +........+.+-..+.-+.+
T Consensus 206 ~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG 259 (341)
T PLN02153 206 ILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGG 259 (341)
T ss_pred cccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECc
Confidence 1358999999999999875442 211122334445555555555
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.14 E-value=0.00049 Score=65.26 Aligned_cols=148 Identities=14% Similarity=0.083 Sum_probs=86.5
Q ss_pred cEEEEEEcCCCccccccCCccccceeecCCcceEEECceEEEEEeecCC---CCccEEEEEEcCCceeeee-cCCCCCCC
Q 038188 183 AHVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNANLNGVFYWFVSRAGD---FHSKLILLFRISDEEFQEI-QRPCIPYT 258 (384)
Q Consensus 183 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~---~~~~~il~fD~~~~~~~~i-~~P~~~~~ 258 (384)
..+++|+..++.|+.+..++ .........+.+++.||.+.+.... ........||+++.+|+.+ ++|.....
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p----~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~ 264 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESP----FLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGG 264 (376)
T ss_pred ceEEEEECCCCeeeECCcCC----CCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcC
Confidence 57999999999999876542 2111223467789999999874211 1123445678889999886 45543311
Q ss_pred ------CceeEEEECCeEEEEEecCCC--------------------CeEEEEEEcCCceeEEEEeCCCCccccceEEEe
Q 038188 259 ------PFESLAPLNGSIALLHLDESN--------------------QYIEIWVMNEMNWIQQFAIGPFLGVKSPCGFWK 312 (384)
Q Consensus 259 ------~~~~l~~~~G~L~l~~~~~~~--------------------~~l~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~ 312 (384)
.....++.+|+|+++...... ..++++-.+...|+++..+ |.+ .....++.-
T Consensus 265 ~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l-p~~-r~~~~av~~ 342 (376)
T PRK14131 265 SSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGEL-PQG-LAYGVSVSW 342 (376)
T ss_pred CcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcC-CCC-ccceEEEEe
Confidence 112246789999998532110 1234555555789886544 222 112223334
Q ss_pred CCEEEEEEeC-------CeEEEEECCCCeEE
Q 038188 313 NNAVLMESIN-------GKLLLYDLVVQEMR 336 (384)
Q Consensus 313 ~~~il~~~~~-------~~l~~yd~~t~~~~ 336 (384)
++.|++..+. ..+..|+++++++.
T Consensus 343 ~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~ 373 (376)
T PRK14131 343 NNGVLLIGGETAGGKAVSDVTLLSWDGKKLT 373 (376)
T ss_pred CCEEEEEcCCCCCCcEeeeEEEEEEcCCEEE
Confidence 6777666432 24677777766554
No 24
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=97.94 E-value=0.00044 Score=64.17 Aligned_cols=139 Identities=9% Similarity=0.048 Sum_probs=87.5
Q ss_pred ccccccCCccccceeecCCcceEEECceEEEEEeecCCCCccEEEEEEcCCcee----eee-cCCCCCCCCceeEEEECC
Q 038188 194 SWRVSKGNIKWIPYVFESYYNNANLNGVFYWFVSRAGDFHSKLILLFRISDEEF----QEI-QRPCIPYTPFESLAPLNG 268 (384)
Q Consensus 194 ~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~~~~----~~i-~~P~~~~~~~~~l~~~~G 268 (384)
.|..+..++.... ...++.+++.+|.+...........+..||+.+.+| ..+ ++|... .....++.+|
T Consensus 52 ~W~~~~~lp~~r~-----~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~--~~~~~~~~~~ 124 (323)
T TIGR03548 52 KWVKDGQLPYEAA-----YGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTF--ENGSACYKDG 124 (323)
T ss_pred eEEEcccCCcccc-----ceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCc--cCceEEEECC
Confidence 6988775532211 134678899999998754333356789999999988 333 344332 2345677899
Q ss_pred eEEEEEec-CCCCeEEEEEEcC--CceeEEEEeCCCCccccceEEEeCCEEEEEEeC-----CeEEEEECCCCeEEEEee
Q 038188 269 SIALLHLD-ESNQYIEIWVMNE--MNWIQQFAIGPFLGVKSPCGFWKNNAVLMESIN-----GKLLLYDLVVQEMRDLGR 340 (384)
Q Consensus 269 ~L~l~~~~-~~~~~l~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~-----~~l~~yd~~t~~~~~v~~ 340 (384)
+|+++... .....-++|.++- .+|.++..+.... ......+.-+++|++..+. ..+..||+++++|+.+..
T Consensus 125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~ 203 (323)
T TIGR03548 125 TLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVAD 203 (323)
T ss_pred EEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCC
Confidence 99998542 1122346777765 7899865442112 2223333446777666432 247899999999998865
No 25
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.91 E-value=0.00057 Score=62.59 Aligned_cols=159 Identities=11% Similarity=0.109 Sum_probs=98.7
Q ss_pred cEEEEEEcCCCccccccCCccccceeecCCcceEEECceEEEEEeecCC----CCccEEEEEEcCCceeeeecCCCCC--
Q 038188 183 AHVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNANLNGVFYWFVSRAGD----FHSKLILLFRISDEEFQEIQRPCIP-- 256 (384)
Q Consensus 183 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~----~~~~~il~fD~~~~~~~~i~~P~~~-- 256 (384)
-.+.+|+..|+.|..+... ..|. ..+....|.....|.-+.+-+.. ..-+-+.+||+++-+|+.+..+-..
T Consensus 154 kD~W~fd~~trkweql~~~--g~PS-~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~Pt 230 (521)
T KOG1230|consen 154 KDLWLFDLKTRKWEQLEFG--GGPS-PRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPT 230 (521)
T ss_pred hheeeeeeccchheeeccC--CCCC-CCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCC
Confidence 3578999999999998654 2232 12223456665555554432111 2246789999999999998664311
Q ss_pred CCCceeEEEE-CCeEEEEEe----------cCCCCeEEEEEEcC-------CceeEEEEeC--CCCccccceEEEeCCEE
Q 038188 257 YTPFESLAPL-NGSIALLHL----------DESNQYIEIWVMNE-------MNWIQQFAIG--PFLGVKSPCGFWKNNAV 316 (384)
Q Consensus 257 ~~~~~~l~~~-~G~L~l~~~----------~~~~~~l~iW~l~~-------~~W~~~~~i~--~~~~~~~~~~~~~~~~i 316 (384)
-....++.+. .|.++|... +.....-+.|.|+- -.|.++..+. |.+....-++++++++-
T Consensus 231 pRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~ka 310 (521)
T KOG1230|consen 231 PRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKA 310 (521)
T ss_pred CCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCce
Confidence 1223345555 888877721 12335668999975 3688875543 55555566788887654
Q ss_pred -EEEEe--------------CCeEEEEECCCCeEEEEeeccCC
Q 038188 317 -LMESI--------------NGKLLLYDLVVQEMRDLGRFSSG 344 (384)
Q Consensus 317 -l~~~~--------------~~~l~~yd~~t~~~~~v~~~~~~ 344 (384)
+|..- -..|+.||+..++|.+.++++..
T Consensus 311 l~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq~~~ 353 (521)
T KOG1230|consen 311 LFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQGKK 353 (521)
T ss_pred EEecceecccccchhhhhhhhhhhhheecccchhhHhhhccCC
Confidence 33210 12489999999999887765543
No 26
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.85 E-value=0.00076 Score=58.32 Aligned_cols=136 Identities=13% Similarity=0.244 Sum_probs=88.0
Q ss_pred ccEEEEEEcCCCccccccCCccccceeecCCcceEEECceEEEEEeecC---------CCCccEEEEEEcCCceeeeec-
Q 038188 182 HAHVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNANLNGVFYWFVSRAG---------DFHSKLILLFRISDEEFQEIQ- 251 (384)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~---------~~~~~~il~fD~~~~~~~~i~- 251 (384)
...+++++..|-.|+.+..- ..|-....-..++..+|.+|-+..+.. +...+.|++||+.++.|...+
T Consensus 156 S~d~h~ld~~TmtWr~~~Tk--g~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~ 233 (392)
T KOG4693|consen 156 SQDTHVLDFATMTWREMHTK--GDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPE 233 (392)
T ss_pred hccceeEeccceeeeehhcc--CCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCC
Confidence 45678888899999998653 222222222457888999999998632 133578999999999998652
Q ss_pred CCCCCCCC-ceeEEEECCeEEEEEecC---CCCeEEEEEEcC--CceeEEEEeCCCCc-cccceEEEeCCEEEEE
Q 038188 252 RPCIPYTP-FESLAPLNGSIALLHLDE---SNQYIEIWVMNE--MNWIQQFAIGPFLG-VKSPCGFWKNNAVLME 319 (384)
Q Consensus 252 ~P~~~~~~-~~~l~~~~G~L~l~~~~~---~~~~l~iW~l~~--~~W~~~~~i~~~~~-~~~~~~~~~~~~il~~ 319 (384)
.|....+. .-...+.+|++|+..... ...--++|.++- ..|.++..-+..++ -.+-+++..++++++.
T Consensus 234 ~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LF 308 (392)
T KOG4693|consen 234 NTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLF 308 (392)
T ss_pred CCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEe
Confidence 22222232 334567899999984322 124557899987 78998654332222 2455666667777655
No 27
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.76 E-value=0.0016 Score=58.37 Aligned_cols=44 Identities=27% Similarity=0.438 Sum_probs=39.0
Q ss_pred cCCCC----HHHHHHHHccCChhhhhhhhcccHhhHhhcCChHhHHHH
Q 038188 11 SMLMP----EDVRLEILSRLPVKSLMRLRCVCKSWYALIENPKFISKH 54 (384)
Q Consensus 11 ~~~LP----~dll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~F~~~~ 54 (384)
...|| +++.+.||+.|...+|..|+.|||+|+++++++..-++-
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkL 122 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKL 122 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 35789 999999999999999999999999999999999654443
No 28
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=97.59 E-value=0.0035 Score=58.70 Aligned_cols=154 Identities=10% Similarity=0.014 Sum_probs=90.1
Q ss_pred cEEEEEEc--CCCccccccCCccccceeecCCcceEEECceEEEEEeecCCC------CccEEEEEEcCCceeeeecCCC
Q 038188 183 AHVAVYTS--STDSWRVSKGNIKWIPYVFESYYNNANLNGVFYWFVSRAGDF------HSKLILLFRISDEEFQEIQRPC 254 (384)
Q Consensus 183 ~~~~vyss--~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~------~~~~il~fD~~~~~~~~i~~P~ 254 (384)
..+.+|+. .+++|+....++.. .......+.++|.+|.+....... ....+.+||+.+++|+.+..|.
T Consensus 29 ~~~~~~d~~~~~~~W~~l~~~p~~----~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~ 104 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIADFPGG----PRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRS 104 (346)
T ss_pred CeeEEEECCCCCCCceECCCCCCC----CcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCC
Confidence 45778886 56889988755311 112235788999999999753111 1346889999999999986332
Q ss_pred CC-CCCceeEEEECCeEEEEEecCCC-----------------------------------CeEEEEEEcC--CceeEEE
Q 038188 255 IP-YTPFESLAPLNGSIALLHLDESN-----------------------------------QYIEIWVMNE--MNWIQQF 296 (384)
Q Consensus 255 ~~-~~~~~~l~~~~G~L~l~~~~~~~-----------------------------------~~l~iW~l~~--~~W~~~~ 296 (384)
.. ......++..+|+||++.-.... ..-.+|..+- ..|..+.
T Consensus 105 p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~ 184 (346)
T TIGR03547 105 PVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG 184 (346)
T ss_pred CCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECc
Confidence 22 11222233679999998432110 0124666664 7899975
Q ss_pred EeCCCCccccceEEEeCCEEEEEEeC-------CeEEEE--ECCCCeEEEEeec
Q 038188 297 AIGPFLGVKSPCGFWKNNAVLMESIN-------GKLLLY--DLVVQEMRDLGRF 341 (384)
Q Consensus 297 ~i~~~~~~~~~~~~~~~~~il~~~~~-------~~l~~y--d~~t~~~~~v~~~ 341 (384)
.++... ....-.+.-+++|++..+. ..+..| |+++++|+++...
T Consensus 185 ~~p~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m 237 (346)
T TIGR03547 185 ENPFLG-TAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPL 237 (346)
T ss_pred cCCCCc-CCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCC
Confidence 542111 1222223346777665331 124445 4577799887654
No 29
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=8.5e-05 Score=65.49 Aligned_cols=40 Identities=33% Similarity=0.545 Sum_probs=37.1
Q ss_pred ccCCCCHHHHHHHHccCChhhhhhhhcccHhhHhhcCChH
Q 038188 10 SSMLMPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENPK 49 (384)
Q Consensus 10 ~~~~LP~dll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~ 49 (384)
.|..||||+++.||+.|+-|+|++...|||+|+++.++..
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~ 136 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES 136 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence 4789999999999999999999999999999999987653
No 30
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.00 E-value=0.042 Score=53.82 Aligned_cols=207 Identities=9% Similarity=0.043 Sum_probs=119.6
Q ss_pred eEEEEccCcccccccCCCCCCCCcccccceeeeEEeeeCCCCCEEEEEEEEEecccccccccccEEEEEEcCCCcccccc
Q 038188 120 LITLWNPATKECRTLPNYKKNLPALATFLKRNAIFGLCDASGDYKVVFICKLWNEKIQDAYEHAHVAVYTSSTDSWRVSK 199 (384)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 199 (384)
.++|+|-.+..|..........+.... ......+ + +++.+. +... .......++.|+..|++|+...
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g--~~~~~~~------~-~l~lfG---G~~~-~~~~~~~l~~~d~~t~~W~~l~ 155 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYG--HSLSAVG------D-KLYLFG---GTDK-KYRNLNELHSLDLSTRTWSLLS 155 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccc--eeEEEEC------C-eEEEEc---cccC-CCCChhheEeccCCCCcEEEec
Confidence 499999999999876554332211110 1111111 2 222221 1110 1111568999999999999876
Q ss_pred CCccccceeecCCcceEEECceEEEEEeecCCC-CccEEEEEEcCCceeeeecCCCCC--CCCceeEEEECCeEEEEEec
Q 038188 200 GNIKWIPYVFESYYNNANLNGVFYWFVSRAGDF-HSKLILLFRISDEEFQEIQRPCIP--YTPFESLAPLNGSIALLHLD 276 (384)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~~il~fD~~~~~~~~i~~P~~~--~~~~~~l~~~~G~L~l~~~~ 276 (384)
.... .|- .......+.++-.+|.+.+..... ..+.+.+||+.+.+|..+...... -...-.++..+++++++...
T Consensus 156 ~~~~-~P~-~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~ 233 (482)
T KOG0379|consen 156 PTGD-PPP-PRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGG 233 (482)
T ss_pred CcCC-CCC-CcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEecc
Confidence 5422 121 112234566677788877654333 578999999999999987553222 12333566778888888443
Q ss_pred C--CCCeEEEEEEcC--CceeEEEEeC--CCCccccceEEEeCCEEEEEEe--------CCeEEEEECCCCeEEEEeecc
Q 038188 277 E--SNQYIEIWVMNE--MNWIQQFAIG--PFLGVKSPCGFWKNNAVLMESI--------NGKLLLYDLVVQEMRDLGRFS 342 (384)
Q Consensus 277 ~--~~~~l~iW~l~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~il~~~~--------~~~l~~yd~~t~~~~~v~~~~ 342 (384)
. ...-=++|.|+= ..|.++.... |.+...+... ..+..+++..+ -..++.||.+++.|..+...+
T Consensus 234 ~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~-~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 234 DDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLT-VSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred ccCCceecceEeeecccceeeeccccCCCCCCcceeeeE-EECCEEEEEcCCcccccccccccccccccccceeeeeccc
Confidence 3 223447999877 6677544322 2233344444 33444444321 235899999999998887655
No 31
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.78 E-value=0.13 Score=50.47 Aligned_cols=179 Identities=9% Similarity=0.028 Sum_probs=107.3
Q ss_pred EEEEEEcCCCccccccCCccccceeecCCcceEEECceEEEEEeecC-CCCccEEEEEEcCCceeeeecCCCC-C-CCCc
Q 038188 184 HVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNANLNGVFYWFVSRAG-DFHSKLILLFRISDEEFQEIQRPCI-P-YTPF 260 (384)
Q Consensus 184 ~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~~il~fD~~~~~~~~i~~P~~-~-~~~~ 260 (384)
.+.+|+..+..|...... ...|. .......+.++..||.+..... ....+.+-.||+.+.+|..+..-.. . ....
T Consensus 89 dl~~~d~~~~~w~~~~~~-g~~p~-~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~ 166 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAAT-GDEPS-PRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAG 166 (482)
T ss_pred eeEEeecCCccccccccc-CCCCC-cccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCccc
Confidence 588899999999865432 12221 1222357888899999987542 2334689999999999988633111 1 1233
Q ss_pred eeEEEECCeEEEEEec--CCCCeEEEEEEcC--CceeEEEEeCCCC--ccccceEEEeCCEEEEEEeC------CeEEEE
Q 038188 261 ESLAPLNGSIALLHLD--ESNQYIEIWVMNE--MNWIQQFAIGPFL--GVKSPCGFWKNNAVLMESIN------GKLLLY 328 (384)
Q Consensus 261 ~~l~~~~G~L~l~~~~--~~~~~l~iW~l~~--~~W~~~~~i~~~~--~~~~~~~~~~~~~il~~~~~------~~l~~y 328 (384)
-.++..+.+|++..-. .....-++|+++- ..|.++.+.++.+ ...+.+.+.++..+++.... ..+..+
T Consensus 167 Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~l 246 (482)
T KOG0379|consen 167 HSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHIL 246 (482)
T ss_pred ceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEee
Confidence 3455667778777322 2225778999876 7799998877544 23344455544444443332 248999
Q ss_pred ECCCCeEEEEeeccCCCCcceEEEEEEec-cceeCCC
Q 038188 329 DLVVQEMRDLGRFSSGELGAAILIYCYKE-SLIRLKG 364 (384)
Q Consensus 329 d~~t~~~~~v~~~~~~~~~~~~~~~~y~~-sL~~~~~ 364 (384)
|+.+.+|+.+-..+..-.++......+.+ .++-+.+
T Consensus 247 dl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG 283 (482)
T KOG0379|consen 247 DLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGG 283 (482)
T ss_pred ecccceeeeccccCCCCCCcceeeeEEECCEEEEEcC
Confidence 99999999766544332223333333433 4444443
No 32
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=96.42 E-value=0.096 Score=45.72 Aligned_cols=215 Identities=11% Similarity=0.081 Sum_probs=115.8
Q ss_pred eEEEEccCcccccccCCCCCC-CCcccccceeeeEEeeeCCCCCEEEEEEE---EEecccccccccccEEEEEEcCCCcc
Q 038188 120 LITLWNPATKECRTLPNYKKN-LPALATFLKRNAIFGLCDASGDYKVVFIC---KLWNEKIQDAYEHAHVAVYTSSTDSW 195 (384)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~-~~~~~~~~~~~~~~g~d~~~~~ykvv~~~---~~~~~~~~~~~~~~~~~vyss~t~~W 195 (384)
.+.|+|-.+-+|..+|+--.+ ....... .....-| ...||... ...+...+.........-|+.+++.|
T Consensus 45 DVH~lNa~~~RWtk~pp~~~ka~i~~~yp--~VPyqRY-----GHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W 117 (392)
T KOG4693|consen 45 DVHVLNAENYRWTKMPPGITKATIESPYP--AVPYQRY-----GHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVW 117 (392)
T ss_pred eeEEeeccceeEEecCcccccccccCCCC--ccchhhc-----CceEEEEcceEEEEcCccCcccccceeeeeccccccc
Confidence 679999999999999883211 0000000 0000001 11222221 11222222122256678899999999
Q ss_pred ccccCCccccceeecCCcceEEECceEEEEEeec--CCCCccEEEEEEcCCceeeeecC---CCCCCCCceeEEEECCeE
Q 038188 196 RVSKGNIKWIPYVFESYYNNANLNGVFYWFVSRA--GDFHSKLILLFRISDEEFQEIQR---PCIPYTPFESLAPLNGSI 270 (384)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~--~~~~~~~il~fD~~~~~~~~i~~---P~~~~~~~~~l~~~~G~L 270 (384)
...+.. ..+|. .....++++.+..+|-+.... ......-+-.||+++.+|+.+.. |+.- ...-...+++|.+
T Consensus 118 ~~p~v~-G~vPg-aRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~Pprw-RDFH~a~~~~~~M 194 (392)
T KOG4693|consen 118 KKPEVE-GFVPG-ARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRW-RDFHTASVIDGMM 194 (392)
T ss_pred ccccee-eecCC-ccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchh-hhhhhhhhccceE
Confidence 976521 22232 222345677788888887632 12336678899999999999854 4432 2222334556777
Q ss_pred EEEEecC----------CCCeEEEEEEcC--CceeEEEEeCCCCccccc-eEEEeCCEEEEEEe--------CCeEEEEE
Q 038188 271 ALLHLDE----------SNQYIEIWVMNE--MNWIQQFAIGPFLGVKSP-CGFWKNNAVLMESI--------NGKLLLYD 329 (384)
Q Consensus 271 ~l~~~~~----------~~~~l~iW~l~~--~~W~~~~~i~~~~~~~~~-~~~~~~~~il~~~~--------~~~l~~yd 329 (384)
|+..... +.-+-+|=.|+- +.|.+-..-...+.-.+- -.+.-++++++..+ -..++.||
T Consensus 195 YiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~Fd 274 (392)
T KOG4693|consen 195 YIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFD 274 (392)
T ss_pred EEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecc
Confidence 7763211 011223444443 788875322111211111 12223667655422 12599999
Q ss_pred CCCCeEEEEeeccCC
Q 038188 330 LVVQEMRDLGRFSSG 344 (384)
Q Consensus 330 ~~t~~~~~v~~~~~~ 344 (384)
++|..|+.|...|..
T Consensus 275 P~t~~W~~I~~~Gk~ 289 (392)
T KOG4693|consen 275 PKTSMWSVISVRGKY 289 (392)
T ss_pred cccchheeeeccCCC
Confidence 999999999887653
No 33
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.06 E-value=0.0036 Score=55.64 Aligned_cols=43 Identities=23% Similarity=0.533 Sum_probs=37.8
Q ss_pred cCCCCHHHHHHHHccCCh-----hhhhhhhcccHhhHhhcCChHhHHH
Q 038188 11 SMLMPEDVRLEILSRLPV-----KSLMRLRCVCKSWYALIENPKFISK 53 (384)
Q Consensus 11 ~~~LP~dll~eIl~rLp~-----~~l~r~r~VcK~W~~li~~p~F~~~ 53 (384)
...|||||+.+||.++=. .+|.++.+|||.|+....+|.|-+.
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~ 154 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRL 154 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHH
Confidence 368999999999988764 9999999999999999999987544
No 34
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=95.97 E-value=0.56 Score=43.67 Aligned_cols=157 Identities=10% Similarity=0.188 Sum_probs=94.6
Q ss_pred cEEEEEEcCCCccccccCCccccceeecCCcceEEEC-ceEEEEEeecCCCC------ccEEEEEEcCCceeeeecCCCC
Q 038188 183 AHVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNANLN-GVFYWFVSRAGDFH------SKLILLFRISDEEFQEIQRPCI 255 (384)
Q Consensus 183 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~-G~lywl~~~~~~~~------~~~il~fD~~~~~~~~i~~P~~ 255 (384)
..+..|+.+++.|+.+.....+.|.. ...+|++- |.+|.+.+...+.. -.-+..||+.+.+|..+.++..
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRs---shq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~ 174 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRS---SHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGG 174 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCc---cceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCC
Confidence 45778999999999987654444432 22344444 76766665432211 3457899999999999988765
Q ss_pred CCCCc-eeEEEECCeEEEE-EecCCCC----eEEEEEEcC--CceeEEEEeC--CCCccccceEEEeCCEEEEEE-----
Q 038188 256 PYTPF-ESLAPLNGSIALL-HLDESNQ----YIEIWVMNE--MNWIQQFAIG--PFLGVKSPCGFWKNNAVLMES----- 320 (384)
Q Consensus 256 ~~~~~-~~l~~~~G~L~l~-~~~~~~~----~l~iW~l~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~il~~~----- 320 (384)
.+... -.++..+.+|.+. ..++..+ --+||.++= ..|.++..-. |.+.-..-+.+.+.+.|++..
T Consensus 175 PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~ 254 (521)
T KOG1230|consen 175 PSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQ 254 (521)
T ss_pred CCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHh
Confidence 53332 2566778888777 2232222 236777654 7899976522 333223344555455554431
Q ss_pred ----------eCCeEEEEECCC-----CeEEEEeecc
Q 038188 321 ----------INGKLLLYDLVV-----QEMRDLGRFS 342 (384)
Q Consensus 321 ----------~~~~l~~yd~~t-----~~~~~v~~~~ 342 (384)
.+..++..++++ -+|.++.-.|
T Consensus 255 ~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g 291 (521)
T KOG1230|consen 255 RVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSG 291 (521)
T ss_pred hhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCC
Confidence 123488999998 4566665433
No 35
>PF13964 Kelch_6: Kelch motif
Probab=95.73 E-value=0.027 Score=36.10 Aligned_cols=40 Identities=13% Similarity=0.207 Sum_probs=33.0
Q ss_pred ceEEECceEEEEEeecC-CCCccEEEEEEcCCceeeee-cCC
Q 038188 214 NNANLNGVFYWFVSRAG-DFHSKLILLFRISDEEFQEI-QRP 253 (384)
Q Consensus 214 ~~v~~~G~lywl~~~~~-~~~~~~il~fD~~~~~~~~i-~~P 253 (384)
.+|.++|.||.+.+... ......+..||+++++|+.+ ++|
T Consensus 6 s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 6 SAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred EEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence 57889999999998654 45578999999999999998 444
No 36
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=94.62 E-value=1.9 Score=38.21 Aligned_cols=118 Identities=14% Similarity=0.222 Sum_probs=76.1
Q ss_pred cceEEECceEEEEEeecCCCCccEEEEEEcCCceee-eecCCCCCC----------CCceeEEEECCeEEEEEecCCC-C
Q 038188 213 YNNANLNGVFYWFVSRAGDFHSKLILLFRISDEEFQ-EIQRPCIPY----------TPFESLAPLNGSIALLHLDESN-Q 280 (384)
Q Consensus 213 ~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~----------~~~~~l~~~~G~L~l~~~~~~~-~ 280 (384)
...|+.||.+|... .....|+.||+.++... ...+|.... .....+++-+..|.++....+. .
T Consensus 72 tG~vVYngslYY~~-----~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g 146 (250)
T PF02191_consen 72 TGHVVYNGSLYYNK-----YNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG 146 (250)
T ss_pred CCeEEECCcEEEEe-----cCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC
Confidence 35688899999988 35889999999999998 778887651 2245678888889998664433 4
Q ss_pred eEEEEEEcC------CceeEEEEeCCCCccccceEEEeCCEEEEEEe-----CCeEEEEECCCCeEEEEee
Q 038188 281 YIEIWVMNE------MNWIQQFAIGPFLGVKSPCGFWKNNAVLMESI-----NGKLLLYDLVVQEMRDLGR 340 (384)
Q Consensus 281 ~l~iW~l~~------~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~-----~~~l~~yd~~t~~~~~v~~ 340 (384)
.+.|=.|+. .+|.--+ +.+.+.. ++---|.++.... ..-.+.||+.+++-+.+.+
T Consensus 147 ~ivvskld~~tL~v~~tw~T~~---~k~~~~n--aFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i 212 (250)
T PF02191_consen 147 NIVVSKLDPETLSVEQTWNTSY---PKRSAGN--AFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSI 212 (250)
T ss_pred cEEEEeeCcccCceEEEEEecc---Cchhhcc--eeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceee
Confidence 688888876 4565321 1111111 1111334433322 1236888999888777665
No 37
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.37 E-value=3 Score=37.01 Aligned_cols=218 Identities=13% Similarity=0.071 Sum_probs=116.5
Q ss_pred cccceEEEeeC--CeEEEEccCcccccccCCCCCCCCccccc------ceeeeE---EeeeCCCCCEEEEEEEEEecccc
Q 038188 108 PYDGIFCLCDG--GLITLWNPATKECRTLPNYKKNLPALATF------LKRNAI---FGLCDASGDYKVVFICKLWNEKI 176 (384)
Q Consensus 108 s~~GLl~~~~~--~~~~V~NP~T~~~~~LP~~~~~~~~~~~~------~~~~~~---~g~d~~~~~ykvv~~~~~~~~~~ 176 (384)
+-+|-|-+... ..+-=+||.|++..+.|......+++... .....+ .=+|+.+.+++=..+.. +.
T Consensus 70 apdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~---~~- 145 (353)
T COG4257 70 APDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPL---EH- 145 (353)
T ss_pred CCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeeccc---cc-
Confidence 45676666542 34566799999999998876655543211 011111 11234333333222221 11
Q ss_pred cccccccEEEEEEcCCCccccccCCc-----c------ccceeecCCcc--eEEECceEEEEEeecCCCCccEEEEEEcC
Q 038188 177 QDAYEHAHVAVYTSSTDSWRVSKGNI-----K------WIPYVFESYYN--NANLNGVFYWFVSRAGDFHSKLILLFRIS 243 (384)
Q Consensus 177 ~~~~~~~~~~vyss~t~~W~~~~~~~-----~------~~~~~~~~~~~--~v~~~G~lywl~~~~~~~~~~~il~fD~~ 243 (384)
.+.....-||+-..+-|-+-+... + .++.-...... ++.-||.+|+-. ...+.|...|+.
T Consensus 146 --a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyas-----lagnaiaridp~ 218 (353)
T COG4257 146 --ADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYAS-----LAGNAIARIDPF 218 (353)
T ss_pred --CCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEe-----ccccceEEcccc
Confidence 222677788998888886532110 0 00111111123 444589998765 458899999999
Q ss_pred CceeeeecCCCCCCCCceeEEE-ECCeEEEEEecCCCCeEEEEEEcC--CceeEEEEeCCCCccccceEEEeCCEEEEEE
Q 038188 244 DEEFQEIQRPCIPYTPFESLAP-LNGSIALLHLDESNQYIEIWVMNE--MNWIQQFAIGPFLGVKSPCGFWKNNAVLMES 320 (384)
Q Consensus 244 ~~~~~~i~~P~~~~~~~~~l~~-~~G~L~l~~~~~~~~~l~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~ 320 (384)
+..-++++.|.........+.. .-|++...+... . .+-..+- .+|.. +.++-.+.-..-+.+..-++|.+..
T Consensus 219 ~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~--g--~l~rfdPs~~sW~e-ypLPgs~arpys~rVD~~grVW~se 293 (353)
T COG4257 219 AGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGT--G--SLHRFDPSVTSWIE-YPLPGSKARPYSMRVDRHGRVWLSE 293 (353)
T ss_pred cCCcceecCCCcccccccccccCccCcEEEeccCC--c--eeeEeCccccccee-eeCCCCCCCcceeeeccCCcEEeec
Confidence 9988899999875222222222 234443332211 1 2222222 45655 3332222112234455556776643
Q ss_pred -eCCeEEEEECCCCeEEEEeec
Q 038188 321 -INGKLLLYDLVVQEMRDLGRF 341 (384)
Q Consensus 321 -~~~~l~~yd~~t~~~~~v~~~ 341 (384)
..+-+.-||++|.++..+.+.
T Consensus 294 a~agai~rfdpeta~ftv~p~p 315 (353)
T COG4257 294 ADAGAIGRFDPETARFTVLPIP 315 (353)
T ss_pred cccCceeecCcccceEEEecCC
Confidence 345699999999999988763
No 38
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=94.25 E-value=0.17 Score=31.74 Aligned_cols=38 Identities=8% Similarity=0.182 Sum_probs=32.6
Q ss_pred cceEEECceEEEEEeecC-CCCccEEEEEEcCCceeeee
Q 038188 213 YNNANLNGVFYWFVSRAG-DFHSKLILLFRISDEEFQEI 250 (384)
Q Consensus 213 ~~~v~~~G~lywl~~~~~-~~~~~~il~fD~~~~~~~~i 250 (384)
..++.++|.+|-+.+... ......+..||+.+.+|+.+
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 43 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEEL 43 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEE
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEc
Confidence 357889999999998755 56688999999999999986
No 39
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.41 E-value=5.9 Score=37.72 Aligned_cols=167 Identities=16% Similarity=0.196 Sum_probs=93.4
Q ss_pred ccEEEEEEcCCCccccccCCccccceeecCCcceEEECceEEEEEeecCCCCccEEEEEEcCCcee-eeecCCCCCCCCc
Q 038188 182 HAHVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNANLNGVFYWFVSRAGDFHSKLILLFRISDEEF-QEIQRPCIPYTPF 260 (384)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~ 260 (384)
..++++|++.+..=+..-. .+... -....+..+|.|.-.+ ...+.+-.||..+... +.+.--... ...
T Consensus 47 S~rvqly~~~~~~~~k~~s---rFk~~--v~s~~fR~DG~LlaaG-----D~sG~V~vfD~k~r~iLR~~~ah~ap-v~~ 115 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVRKTFS---RFKDV--VYSVDFRSDGRLLAAG-----DESGHVKVFDMKSRVILRQLYAHQAP-VHV 115 (487)
T ss_pred ccEEEEEecchhhhhhhHH---hhccc--eeEEEeecCCeEEEcc-----CCcCcEEEeccccHHHHHHHhhccCc-eeE
Confidence 5889999998865433100 00000 0012345579998777 5588999999655222 222211111 111
Q ss_pred eeEEEECCeEEEEEecCCCCeEEEEEEcCCceeEEEEeCCCCccccceEEEe-CCEEEEEEe-CCeEEEEECCCCeEEEE
Q 038188 261 ESLAPLNGSIALLHLDESNQYIEIWVMNEMNWIQQFAIGPFLGVKSPCGFWK-NNAVLMESI-NGKLLLYDLVVQEMRDL 338 (384)
Q Consensus 261 ~~l~~~~G~L~l~~~~~~~~~l~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~-~~~il~~~~-~~~l~~yd~~t~~~~~v 338 (384)
...-.-++.+.+.+.++ ....+|.+.... + +..+.-.....+-..+.+ ++-+++..+ ++.+-.||.++.+-+.+
T Consensus 116 ~~f~~~d~t~l~s~sDd--~v~k~~d~s~a~-v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~ 191 (487)
T KOG0310|consen 116 TKFSPQDNTMLVSGSDD--KVVKYWDLSTAY-V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVV 191 (487)
T ss_pred EEecccCCeEEEecCCC--ceEEEEEcCCcE-E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeE
Confidence 22223455555555555 899999998722 3 445555554445555544 556766644 77899999999973333
Q ss_pred eeccCCCCcceEEEEEEecc--ceeCCCCCc
Q 038188 339 GRFSSGELGAAILIYCYKES--LIRLKGEEE 367 (384)
Q Consensus 339 ~~~~~~~~~~~~~~~~y~~s--L~~~~~~~~ 367 (384)
.++ .. +....++|.|| ++-.+++++
T Consensus 192 eln-hg---~pVe~vl~lpsgs~iasAgGn~ 218 (487)
T KOG0310|consen 192 ELN-HG---CPVESVLALPSGSLIASAGGNS 218 (487)
T ss_pred Eec-CC---CceeeEEEcCCCCEEEEcCCCe
Confidence 332 22 34456667664 665555554
No 40
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.37 E-value=2 Score=38.03 Aligned_cols=124 Identities=14% Similarity=0.174 Sum_probs=79.2
Q ss_pred ceeeccccceEEEee--CCeEEEEccCcccccccCCCCCCCCcccccceeeeEEeeeCCCCCEEEEEEEEEecccccccc
Q 038188 103 RELLGPYDGIFCLCD--GGLITLWNPATKECRTLPNYKKNLPALATFLKRNAIFGLCDASGDYKVVFICKLWNEKIQDAY 180 (384)
Q Consensus 103 ~~~~~s~~GLl~~~~--~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~ 180 (384)
.-+++.-||=|-+.. ++.+...||.++.--.+|.+..... -.-..+.|+... +.+.. .+
T Consensus 192 yGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~-------gsRriwsdpig~----~witt-wg------- 252 (353)
T COG4257 192 YGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKA-------GSRRIWSDPIGR----AWITT-WG------- 252 (353)
T ss_pred cceEECCCCcEEEEeccccceEEcccccCCcceecCCCcccc-------cccccccCccCc----EEEec-cC-------
Confidence 356666777776663 5678889999997777877654211 111123343221 11110 01
Q ss_pred cccEEEEEEcCCCccccccCCccccceeecCCcceEEECce-EEEEEeecCCCCccEEEEEEcCCceeeeecCCCCC
Q 038188 181 EHAHVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNANLNGV-FYWFVSRAGDFHSKLILLFRISDEEFQEIQRPCIP 256 (384)
Q Consensus 181 ~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~ 256 (384)
.-.++-|+..+.+|.+-. +|..... ..+++|+.. .-|+.+ -..+.|..||+.+++|++++.|...
T Consensus 253 -~g~l~rfdPs~~sW~eyp-----LPgs~ar-pys~rVD~~grVW~se----a~agai~rfdpeta~ftv~p~pr~n 318 (353)
T COG4257 253 -TGSLHRFDPSVTSWIEYP-----LPGSKAR-PYSMRVDRHGRVWLSE----ADAGAIGRFDPETARFTVLPIPRPN 318 (353)
T ss_pred -CceeeEeCcccccceeee-----CCCCCCC-cceeeeccCCcEEeec----cccCceeecCcccceEEEecCCCCC
Confidence 567888999999999763 2332222 135666644 568775 5689999999999999999998654
No 41
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=93.17 E-value=5.3 Score=34.65 Aligned_cols=187 Identities=12% Similarity=0.056 Sum_probs=91.7
Q ss_pred ccceEEEee-CCeEEEEccCcccccccCCCCCCCCcccccceeeeEEeeeCCCCCEEEEEEEEEecccccccccccEEEE
Q 038188 109 YDGIFCLCD-GGLITLWNPATKECRTLPNYKKNLPALATFLKRNAIFGLCDASGDYKVVFICKLWNEKIQDAYEHAHVAV 187 (384)
Q Consensus 109 ~~GLl~~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~v 187 (384)
.+|.+.+.. ...++.+|+.||+.+.--..+.. ... . ... ..=+|+... . ...+..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~----~~~--~--~~~-----~~~~v~v~~----~-------~~~l~~ 90 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP----ISG--A--PVV-----DGGRVYVGT----S-------DGSLYA 90 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC----GGS--G--EEE-----ETTEEEEEE----T-------TSEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc----ccc--e--eee-----ccccccccc----c-------eeeeEe
Confidence 577777764 67899999999987542222211 000 0 000 011111111 0 235666
Q ss_pred EEcCCC--cccc-ccCCccccceeecCCcceEEECceEEEEEeecCCCCccEEEEEEcCCce--eee-ecCCCCCC----
Q 038188 188 YTSSTD--SWRV-SKGNIKWIPYVFESYYNNANLNGVFYWFVSRAGDFHSKLILLFRISDEE--FQE-IQRPCIPY---- 257 (384)
Q Consensus 188 yss~t~--~W~~-~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~~~--~~~-i~~P~~~~---- 257 (384)
++..++ .|+. .... +... ..........++.+|.... ...|.++|+.+.+ |+. +..|....
T Consensus 91 ~d~~tG~~~W~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~ 161 (238)
T PF13360_consen 91 LDAKTGKVLWSIYLTSS-PPAG--VRSSSSPAVDGDRLYVGTS------SGKLVALDPKTGKLLWKYPVGEPRGSSPISS 161 (238)
T ss_dssp EETTTSCEEEEEEE-SS-CTCS--TB--SEEEEETTEEEEEET------CSEEEEEETTTTEEEEEEESSTT-SS--EEE
T ss_pred cccCCcceeeeeccccc-cccc--cccccCceEecCEEEEEec------cCcEEEEecCCCcEEEEeecCCCCCCcceee
Confidence 665554 6873 3221 1111 1111223334566666543 7899999987654 443 33333211
Q ss_pred --CCceeEEEECCeEEEEEecCCCCeEEEEEEcC--CceeEEEEeCCCCccccceEEEeCCEEEEEEeCCeEEEEECCCC
Q 038188 258 --TPFESLAPLNGSIALLHLDESNQYIEIWVMNE--MNWIQQFAIGPFLGVKSPCGFWKNNAVLMESINGKLLLYDLVVQ 333 (384)
Q Consensus 258 --~~~~~l~~~~G~L~l~~~~~~~~~l~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~ 333 (384)
.....++..+|.+++..... ..+.+ -+.. ..|.+. + .. ........++.+++...++.++.+|++|+
T Consensus 162 ~~~~~~~~~~~~~~v~~~~~~g--~~~~~-d~~tg~~~w~~~--~---~~-~~~~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 162 FSDINGSPVISDGRVYVSSGDG--RVVAV-DLATGEKLWSKP--I---SG-IYSLPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp ETTEEEEEECCTTEEEEECCTS--SEEEE-ETTTTEEEEEEC--S---S--ECECEECCCTEEEEEETTTEEEEEETTTT
T ss_pred ecccccceEEECCEEEEEcCCC--eEEEE-ECCCCCEEEEec--C---CC-ccCCceeeCCEEEEEeCCCEEEEEECCCC
Confidence 11234444567555544333 23333 3333 236331 1 11 11112334677777777889999999999
Q ss_pred eEEE
Q 038188 334 EMRD 337 (384)
Q Consensus 334 ~~~~ 337 (384)
+...
T Consensus 233 ~~~W 236 (238)
T PF13360_consen 233 KVVW 236 (238)
T ss_dssp EEEE
T ss_pred CEEe
Confidence 8654
No 42
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=92.87 E-value=6.2 Score=34.68 Aligned_cols=198 Identities=15% Similarity=0.094 Sum_probs=104.7
Q ss_pred ccccceEEEee--CCeEEEEccCcccccccCCCCCCCCcccccceeeeEEeeeCCCCCEEEEEEEEEecccccccccccE
Q 038188 107 GPYDGIFCLCD--GGLITLWNPATKECRTLPNYKKNLPALATFLKRNAIFGLCDASGDYKVVFICKLWNEKIQDAYEHAH 184 (384)
Q Consensus 107 ~s~~GLl~~~~--~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 184 (384)
+..+|-|.+.+ .+.++.++|.+++...+..+. ..++.++...+.+ +++. ...
T Consensus 8 d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~------------~~G~~~~~~~g~l-~v~~-------------~~~ 61 (246)
T PF08450_consen 8 DPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG------------PNGMAFDRPDGRL-YVAD-------------SGG 61 (246)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS------------EEEEEEECTTSEE-EEEE-------------TTC
T ss_pred ECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC------------CceEEEEccCCEE-EEEE-------------cCc
Confidence 33467777776 568999999999886543322 3445555322333 2222 344
Q ss_pred EEEEEcCCCccccccCCcccc-ceeecCCcceEEECceEEEEEeecC-CCCc--cEEEEEEcCCceeeee----cCCCCC
Q 038188 185 VAVYTSSTDSWRVSKGNIKWI-PYVFESYYNNANLNGVFYWFVSRAG-DFHS--KLILLFRISDEEFQEI----QRPCIP 256 (384)
Q Consensus 185 ~~vyss~t~~W~~~~~~~~~~-~~~~~~~~~~v~~~G~lywl~~~~~-~~~~--~~il~fD~~~~~~~~i----~~P~~~ 256 (384)
..+++..++.++.+...+... +. ...+.-.+--+|.+|.-..... .... ..|..++.. .+.+.+ ..|.
T Consensus 62 ~~~~d~~~g~~~~~~~~~~~~~~~-~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pN-- 137 (246)
T PF08450_consen 62 IAVVDPDTGKVTVLADLPDGGVPF-NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPN-- 137 (246)
T ss_dssp EEEEETTTTEEEEEEEEETTCSCT-EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEE--
T ss_pred eEEEecCCCcEEEEeeccCCCccc-CCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCccccc--
Confidence 566688888887664431110 11 1111224445788766554321 1112 789999999 444432 2231
Q ss_pred CCCceeEEEE-CCe-EEEEEecCCCCeEEEEEEcC--CceeEEEEe-CCCCc--cccceEEEeCCEEEEEE-eCCeEEEE
Q 038188 257 YTPFESLAPL-NGS-IALLHLDESNQYIEIWVMNE--MNWIQQFAI-GPFLG--VKSPCGFWKNNAVLMES-INGKLLLY 328 (384)
Q Consensus 257 ~~~~~~l~~~-~G~-L~l~~~~~~~~~l~iW~l~~--~~W~~~~~i-~~~~~--~~~~~~~~~~~~il~~~-~~~~l~~y 328 (384)
.++.. +|+ |++..... .++..+-++. ..+.....+ ..... ...-+++..+|.|++.. ..++++.|
T Consensus 138 -----Gi~~s~dg~~lyv~ds~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~ 210 (246)
T PF08450_consen 138 -----GIAFSPDGKTLYVADSFN--GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVF 210 (246)
T ss_dssp -----EEEEETTSSEEEEEETTT--TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEE
T ss_pred -----ceEECCcchheeeccccc--ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEE
Confidence 23333 454 66655433 4544444443 335433332 22121 23345566678887764 46789999
Q ss_pred ECCCCeEEEEeec
Q 038188 329 DLVVQEMRDLGRF 341 (384)
Q Consensus 329 d~~t~~~~~v~~~ 341 (384)
|++.+.++.+...
T Consensus 211 ~p~G~~~~~i~~p 223 (246)
T PF08450_consen 211 DPDGKLLREIELP 223 (246)
T ss_dssp ETTSCEEEEEE-S
T ss_pred CCCccEEEEEcCC
Confidence 9998778888765
No 43
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=92.75 E-value=0.34 Score=30.75 Aligned_cols=39 Identities=21% Similarity=0.368 Sum_probs=32.2
Q ss_pred ceEEECceEEEEEee---cCCCCccEEEEEEcCCceeeeecC
Q 038188 214 NNANLNGVFYWFVSR---AGDFHSKLILLFRISDEEFQEIQR 252 (384)
Q Consensus 214 ~~v~~~G~lywl~~~---~~~~~~~~il~fD~~~~~~~~i~~ 252 (384)
.++.++|+||.+... ........+..||+++.+|+.++.
T Consensus 6 s~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 6 SAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred EEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 578899999999976 334567889999999999998754
No 44
>smart00284 OLF Olfactomedin-like domains.
Probab=92.72 E-value=4.5 Score=35.78 Aligned_cols=117 Identities=17% Similarity=0.142 Sum_probs=73.8
Q ss_pred ceEEECceEEEEEeecCCCCccEEEEEEcCCceeee-ecCCCCC----------CCCceeEEEECCeEEEEEecC-CCCe
Q 038188 214 NNANLNGVFYWFVSRAGDFHSKLILLFRISDEEFQE-IQRPCIP----------YTPFESLAPLNGSIALLHLDE-SNQY 281 (384)
Q Consensus 214 ~~v~~~G~lywl~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~----------~~~~~~l~~~~G~L~l~~~~~-~~~~ 281 (384)
..|+-||.+|+... ....|+.||+.+++... -.+|... ......+++-+..|.++.... ....
T Consensus 78 G~VVYngslYY~~~-----~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ 152 (255)
T smart00284 78 GVVVYNGSLYFNKF-----NSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGK 152 (255)
T ss_pred cEEEECceEEEEec-----CCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCC
Confidence 57899999999763 36789999999999964 3567532 123467888899999996543 3477
Q ss_pred EEEEEEcC------CceeEEEEeCCCCccccceEEEeCCEEEEEEe-----CCeEEEEECCCCeEEEEee
Q 038188 282 IEIWVMNE------MNWIQQFAIGPFLGVKSPCGFWKNNAVLMESI-----NGKLLLYDLVVQEMRDLGR 340 (384)
Q Consensus 282 l~iW~l~~------~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~-----~~~l~~yd~~t~~~~~v~~ 340 (384)
|.|=.|+. +.|.--+ +.+...- +|---|.++.... ..-.+.||..|++-+.+.+
T Consensus 153 ivvSkLnp~tL~ve~tW~T~~---~k~sa~n--aFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i 217 (255)
T smart00284 153 IVISKLNPATLTIENTWITTY---NKRSASN--AFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDI 217 (255)
T ss_pred EEEEeeCcccceEEEEEEcCC---Ccccccc--cEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeee
Confidence 88888886 5566522 1111110 1111233333321 1236888998887666655
No 45
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.64 E-value=8.3 Score=35.55 Aligned_cols=178 Identities=19% Similarity=0.324 Sum_probs=106.8
Q ss_pred ccEEEEEEcCCCccccccCCccccceeecCCcceEEECc-eEEEEEeec---------------CC--------------
Q 038188 182 HAHVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNANLNG-VFYWFVSRA---------------GD-------------- 231 (384)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G-~lywl~~~~---------------~~-------------- 231 (384)
...+..|++.+++|....... |.... ...++..+| .+|++..-. .+
T Consensus 112 ~nd~Y~y~p~~nsW~kl~t~s---P~gl~-G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~ 187 (381)
T COG3055 112 FNDAYRYDPSTNSWHKLDTRS---PTGLV-GASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDK 187 (381)
T ss_pred eeeeEEecCCCChhheecccc---ccccc-cceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCC
Confidence 456788999999999987653 33221 123444555 777766420 00
Q ss_pred -----CCccEEEEEEcCCceeeeec-CCCCCCCCceeEEEECCeEEEE--EecCCCCeEEEEEEcC----CceeEEEEeC
Q 038188 232 -----FHSKLILLFRISDEEFQEIQ-RPCIPYTPFESLAPLNGSIALL--HLDESNQYIEIWVMNE----MNWIQQFAIG 299 (384)
Q Consensus 232 -----~~~~~il~fD~~~~~~~~i~-~P~~~~~~~~~l~~~~G~L~l~--~~~~~~~~l~iW~l~~----~~W~~~~~i~ 299 (384)
.....+++||+.+++|+..- .|... .....++.-+++|.++ +....-+.-.+|+.+- ..|.++...+
T Consensus 188 ~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~-~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp 266 (381)
T COG3055 188 KAEDYFFNKEVLSYDPSTNQWRNLGENPFYG-NAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLP 266 (381)
T ss_pred CHHHhcccccccccccccchhhhcCcCcccC-ccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCC
Confidence 12567899999999999874 67654 2222334445668777 3333335555666543 7899987665
Q ss_pred CCCccccceEEE------eCCEEEEEE-------------------------eCCeEEEEECCCCeEEEEeeccCCCCcc
Q 038188 300 PFLGVKSPCGFW------KNNAVLMES-------------------------INGKLLLYDLVVQEMRDLGRFSSGELGA 348 (384)
Q Consensus 300 ~~~~~~~~~~~~------~~~~il~~~-------------------------~~~~l~~yd~~t~~~~~v~~~~~~~~~~ 348 (384)
+..+-.. .++. .++.+++.. .+.+++.+| ++.|+.++...... +
T Consensus 267 ~~~~~~~-eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l--~ 341 (381)
T COG3055 267 APIGSNK-EGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGL--A 341 (381)
T ss_pred CCCCCCc-cccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCc--c
Confidence 3321111 1111 144444431 234577777 88898887654432 4
Q ss_pred eEEEEEEeccceeCCCCCcCC
Q 038188 349 AILIYCYKESLIRLKGEEEDS 369 (384)
Q Consensus 349 ~~~~~~y~~sL~~~~~~~~~~ 369 (384)
+--...|-..++.+.+.+..+
T Consensus 342 YG~s~~~nn~vl~IGGE~~~G 362 (381)
T COG3055 342 YGVSLSYNNKVLLIGGETSGG 362 (381)
T ss_pred ceEEEecCCcEEEEccccCCC
Confidence 545667888999998877665
No 46
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=90.03 E-value=12 Score=32.49 Aligned_cols=117 Identities=11% Similarity=0.136 Sum_probs=68.3
Q ss_pred EECceEEEEEeecCCCCccEEEEEEcCCceeeeecCCCCC---CCC-ceeEEEE--CC--eEEEEEec---CCCCeEEEE
Q 038188 217 NLNGVFYWFVSRAGDFHSKLILLFRISDEEFQEIQRPCIP---YTP-FESLAPL--NG--SIALLHLD---ESNQYIEIW 285 (384)
Q Consensus 217 ~~~G~lywl~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~---~~~-~~~l~~~--~G--~L~l~~~~---~~~~~l~iW 285 (384)
.+||-+ .+.. ...++..|+.++++..++.|... ... ...++.. .+ |+..+... .....++|+
T Consensus 3 sCnGLl-c~~~------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vy 75 (230)
T TIGR01640 3 PCDGLI-CFSY------GKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVY 75 (230)
T ss_pred ccceEE-EEec------CCcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEE
Confidence 357887 4432 26799999999999999776532 111 1223321 22 22222221 123578888
Q ss_pred EEcCCceeEEEEeCCCCccccceEEEeCCEEEEEEe-CC-----eEEEEECCCCeEEE-Eeec
Q 038188 286 VMNEMNWIQQFAIGPFLGVKSPCGFWKNNAVLMESI-NG-----KLLLYDLVVQEMRD-LGRF 341 (384)
Q Consensus 286 ~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~-~~-----~l~~yd~~t~~~~~-v~~~ 341 (384)
.+...+|..+....+....... ++.-+|.+.+... .. .++.||++++++++ +...
T Consensus 76 s~~~~~Wr~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P 137 (230)
T TIGR01640 76 TLGSNSWRTIECSPPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLP 137 (230)
T ss_pred EeCCCCccccccCCCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecC
Confidence 8888899987632221111222 4444777755532 11 59999999999995 6553
No 47
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=90.00 E-value=18 Score=34.54 Aligned_cols=119 Identities=11% Similarity=0.117 Sum_probs=67.0
Q ss_pred EEECceEEEEEeecCCCCccEEEEEEcCCce---eeeecCCCCCCCCceeEEEECCeEEEEEecCCCCeEEEEEEcCCce
Q 038188 216 ANLNGVFYWFVSRAGDFHSKLILLFRISDEE---FQEIQRPCIPYTPFESLAPLNGSIALLHLDESNQYIEIWVMNEMNW 292 (384)
Q Consensus 216 v~~~G~lywl~~~~~~~~~~~il~fD~~~~~---~~~i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~l~iW~l~~~~W 292 (384)
-..++.+|.++... ...+.|++.|+++.. |..+-.|......-..+...++.|.+........++.++-++ ..|
T Consensus 284 ~~~~~~~yi~Tn~~--a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~-~~~ 360 (414)
T PF02897_consen 284 DHHGDRLYILTNDD--APNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD-DGK 360 (414)
T ss_dssp EEETTEEEEEE-TT---TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT--TE
T ss_pred EccCCEEEEeeCCC--CCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC-CCc
Confidence 34577888887632 457899999998765 554333322111223445568888888777744566665555 245
Q ss_pred eEEEEeCCCCccccceEEE---eCCEEEEEEe----CCeEEEEECCCCeEEEEe
Q 038188 293 IQQFAIGPFLGVKSPCGFW---KNNAVLMESI----NGKLLLYDLVVQEMRDLG 339 (384)
Q Consensus 293 ~~~~~i~~~~~~~~~~~~~---~~~~il~~~~----~~~l~~yd~~t~~~~~v~ 339 (384)
.....-.|.. .....+. .++.+.+... ...++.||+++++.+.+.
T Consensus 361 ~~~~~~~p~~--g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 361 ESREIPLPEA--GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EEEEEESSSS--SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred EEeeecCCcc--eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 5544322222 2112222 2456655532 456999999999988764
No 48
>PF13964 Kelch_6: Kelch motif
Probab=89.96 E-value=0.57 Score=29.82 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=18.8
Q ss_pred CeEEEEccCcccccccCCCCC
Q 038188 119 GLITLWNPATKECRTLPNYKK 139 (384)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~ 139 (384)
+.++++||.|++|..+|+++.
T Consensus 28 ~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 28 NDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred ccEEEEcCCCCcEEECCCCCC
Confidence 578999999999999998774
No 49
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=89.61 E-value=24 Score=35.24 Aligned_cols=44 Identities=32% Similarity=0.586 Sum_probs=38.9
Q ss_pred cccCCCCHHHHHHHHccCChhhhhhhhcccHhhHhhcCChHhHH
Q 038188 9 ASSMLMPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENPKFIS 52 (384)
Q Consensus 9 ~~~~~LP~dll~eIl~rLp~~~l~r~r~VcK~W~~li~~p~F~~ 52 (384)
.-...||.++...||..|+++++.+++.||+.|+.++.+.....
T Consensus 106 dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 106 DFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred chhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 34578999999999999999999999999999999998765543
No 50
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=89.58 E-value=2.4 Score=33.36 Aligned_cols=66 Identities=14% Similarity=0.346 Sum_probs=47.9
Q ss_pred ccEEEEEEcCCc--eeeeecCCCCC-----C-------CCceeEEEECCeEEEEEecC--------CCCeEEEEEEcC--
Q 038188 234 SKLILLFRISDE--EFQEIQRPCIP-----Y-------TPFESLAPLNGSIALLHLDE--------SNQYIEIWVMNE-- 289 (384)
Q Consensus 234 ~~~il~fD~~~~--~~~~i~~P~~~-----~-------~~~~~l~~~~G~L~l~~~~~--------~~~~l~iW~l~~-- 289 (384)
...|+..|+-.+ .++.|+||... . .....++..+|+|-.++... ....+.+|.|+.
T Consensus 5 ~~GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~ 84 (131)
T PF07762_consen 5 WRGILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPE 84 (131)
T ss_pred CCCEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCC
Confidence 356778888655 77889998866 1 12346778899998884422 356899999976
Q ss_pred ---CceeEEEEeC
Q 038188 290 ---MNWIQQFAIG 299 (384)
Q Consensus 290 ---~~W~~~~~i~ 299 (384)
..|.+-+++.
T Consensus 85 ~~~~~W~~d~~v~ 97 (131)
T PF07762_consen 85 GSSWEWKKDCEVD 97 (131)
T ss_pred CCCCCEEEeEEEE
Confidence 6799999876
No 51
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=89.22 E-value=5.4 Score=37.24 Aligned_cols=85 Identities=13% Similarity=0.223 Sum_probs=51.0
Q ss_pred EEEEEEcCCCccccccCCccccceeecCCcceEEECceEEEEEeecCCCCccEEEEEEcCCce-----------eeeecC
Q 038188 184 HVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNANLNGVFYWFVSRAGDFHSKLILLFRISDEE-----------FQEIQR 252 (384)
Q Consensus 184 ~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~~~-----------~~~i~~ 252 (384)
....|+-.+..|+.++.. .+|+ ...+.++..-=-|+.-..... .+.+-+.|+.+.. |..+..
T Consensus 200 GTysfDt~~~~W~~~GdW--~LPF----~G~a~y~~el~~W~Gls~~~~-~~~lca~dv~~~~~~~~pp~~~~~~~~l~~ 272 (342)
T PF07893_consen 200 GTYSFDTESHEWRKHGDW--MLPF----HGQAEYVPELDLWFGLSSDGG-GGHLCACDVSSADSASPPPEWKLTWEELFP 272 (342)
T ss_pred EEEEEEcCCcceeeccce--ecCc----CCccEECCCcCeEEEeccCCC-CcEEEEEeccccccCCCCCcceeccccccc
Confidence 455666677899999876 5555 235667666656776532111 1588999997632 222333
Q ss_pred CCCCCCCceeEEEE-CCeEEEEEe
Q 038188 253 PCIPYTPFESLAPL-NGSIALLHL 275 (384)
Q Consensus 253 P~~~~~~~~~l~~~-~G~L~l~~~ 275 (384)
|.........|+.+ +|+.|++..
T Consensus 273 ~~~~~~~~~~Lv~lG~grFCi~~~ 296 (342)
T PF07893_consen 273 PEEWRHVGATLVYLGSGRFCIVEF 296 (342)
T ss_pred cccccccCceEEECCCCCEEEEEE
Confidence 33323345567777 557777754
No 52
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=88.06 E-value=16 Score=31.47 Aligned_cols=109 Identities=11% Similarity=0.049 Sum_probs=64.3
Q ss_pred eEEECceEEEEEeecCCCCccEEEEEEcCCceeee-ecCCCCCCCCceeEEEECCeEEEEEecCCCCeEEEEEEc--C--
Q 038188 215 NANLNGVFYWFVSRAGDFHSKLILLFRISDEEFQE-IQRPCIPYTPFESLAPLNGSIALLHLDESNQYIEIWVMN--E-- 289 (384)
Q Consensus 215 ~v~~~G~lywl~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~l~iW~l~--~-- 289 (384)
++..+|.+|.... ...|.++|..+.+-.. ..++... .......+|.+++...+ . .++.++ +
T Consensus 32 ~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~~~~~---~~~~~~~~~~v~v~~~~---~--~l~~~d~~tG~ 97 (238)
T PF13360_consen 32 AVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDLPGPI---SGAPVVDGGRVYVGTSD---G--SLYALDAKTGK 97 (238)
T ss_dssp EEEETTEEEEEET------TSEEEEEETTTSEEEEEEECSSCG---GSGEEEETTEEEEEETT---S--EEEEEETTTSC
T ss_pred EEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeeccccc---cceeeecccccccccce---e--eeEecccCCcc
Confidence 4557888887743 8899999986554432 3444332 11246678888776622 2 555565 2
Q ss_pred CceeE-EEEeCCCCccccceEEEeCCEEEEEEeCCeEEEEECCCCeEEE
Q 038188 290 MNWIQ-QFAIGPFLGVKSPCGFWKNNAVLMESINGKLLLYDLVVQEMRD 337 (384)
Q Consensus 290 ~~W~~-~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~~~~ 337 (384)
..|.. ...-++......+.....++.+++....+.++.+|++|++...
T Consensus 98 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 98 VLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLW 146 (238)
T ss_dssp EEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEE
T ss_pred eeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEE
Confidence 56884 3322222211122222237778777778889999999998643
No 53
>smart00612 Kelch Kelch domain.
Probab=86.72 E-value=1.2 Score=27.31 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=17.1
Q ss_pred ccEEEEEEcCCCccccccCC
Q 038188 182 HAHVAVYTSSTDSWRVSKGN 201 (384)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~ 201 (384)
...+++|++++++|+.+..+
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~ 33 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSM 33 (47)
T ss_pred eeeEEEECCCCCeEccCCCC
Confidence 56789999999999988755
No 54
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=86.69 E-value=1.2 Score=27.99 Aligned_cols=37 Identities=14% Similarity=0.324 Sum_probs=22.7
Q ss_pred ceEEE-CceEEEEEeecCC-CCccEEEEEEcCCceeeee
Q 038188 214 NNANL-NGVFYWFVSRAGD-FHSKLILLFRISDEEFQEI 250 (384)
Q Consensus 214 ~~v~~-~G~lywl~~~~~~-~~~~~il~fD~~~~~~~~i 250 (384)
.++.+ ++.+|.+.+.... ...+.+..||+.+.+|+.+
T Consensus 6 ~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 6 SAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred EEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 34555 5788888875432 3456789999999999988
No 55
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=85.81 E-value=0.52 Score=44.19 Aligned_cols=39 Identities=31% Similarity=0.475 Sum_probs=35.3
Q ss_pred ccCCCCHHHHHHHHccCChhhhhhhhcccHhhHhhcCCh
Q 038188 10 SSMLMPEDVRLEILSRLPVKSLMRLRCVCKSWYALIENP 48 (384)
Q Consensus 10 ~~~~LP~dll~eIl~rLp~~~l~r~r~VcK~W~~li~~p 48 (384)
..-.||.|++..||+-|..+++.|++.+|+.|+.+..|-
T Consensus 71 ~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 71 ISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred ccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence 345899999999999999999999999999999987654
No 56
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=85.38 E-value=18 Score=34.34 Aligned_cols=106 Identities=13% Similarity=0.135 Sum_probs=62.8
Q ss_pred ceEEECceEEEEEeecCCCCccEEEEEEcC--CceeeeecCCCCC---C-----CCceeEEEECCeEEEEEecCCCCeEE
Q 038188 214 NNANLNGVFYWFVSRAGDFHSKLILLFRIS--DEEFQEIQRPCIP---Y-----TPFESLAPLNGSIALLHLDESNQYIE 283 (384)
Q Consensus 214 ~~v~~~G~lywl~~~~~~~~~~~il~fD~~--~~~~~~i~~P~~~---~-----~~~~~l~~~~G~L~l~~~~~~~~~l~ 283 (384)
.++..+|.+|.... .+.+.+||.+ +..|+. +++... . .....++..+|++++...+ . .
T Consensus 64 sPvv~~~~vy~~~~------~g~l~ald~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~---g--~ 131 (394)
T PRK11138 64 HPAVAYNKVYAADR------AGLVKALDADTGKEIWSV-DLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEK---G--Q 131 (394)
T ss_pred ccEEECCEEEEECC------CCeEEEEECCCCcEeeEE-cCCCcccccccccccccccccEEECCEEEEEcCC---C--E
Confidence 56889999998764 5789999986 445653 222210 0 1112345667777765422 2 2
Q ss_pred EEEEcC----CceeEEEEeCCCCccccceEEEeCCEEEEEEeCCeEEEEECCCCeEE
Q 038188 284 IWVMNE----MNWIQQFAIGPFLGVKSPCGFWKNNAVLMESINGKLLLYDLVVQEMR 336 (384)
Q Consensus 284 iW~l~~----~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~~~ 336 (384)
+..++- ..|..... ......|+. .++.+++...++.++.+|.+|++..
T Consensus 132 l~ald~~tG~~~W~~~~~---~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~ 183 (394)
T PRK11138 132 VYALNAEDGEVAWQTKVA---GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVK 183 (394)
T ss_pred EEEEECCCCCCcccccCC---CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEe
Confidence 444432 56765321 111223433 2678888777888999999998754
No 57
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=84.74 E-value=20 Score=33.41 Aligned_cols=114 Identities=12% Similarity=0.187 Sum_probs=69.2
Q ss_pred CceEEEEEeecCCCCccEEEEEEcCCce--ee---eecCCCCCCCCceeEEEE-CCe-EEEEEecCCCCeEEEEEEcC--
Q 038188 219 NGVFYWFVSRAGDFHSKLILLFRISDEE--FQ---EIQRPCIPYTPFESLAPL-NGS-IALLHLDESNQYIEIWVMNE-- 289 (384)
Q Consensus 219 ~G~lywl~~~~~~~~~~~il~fD~~~~~--~~---~i~~P~~~~~~~~~l~~~-~G~-L~l~~~~~~~~~l~iW~l~~-- 289 (384)
+|...|... ...+.|..|+++.+. +. .+.+|... .-.+++.. +|+ +|++.... ..+.++.++.
T Consensus 154 dg~~v~v~d----lG~D~v~~~~~~~~~~~l~~~~~~~~~~G~--GPRh~~f~pdg~~~Yv~~e~s--~~v~v~~~~~~~ 225 (345)
T PF10282_consen 154 DGRFVYVPD----LGADRVYVYDIDDDTGKLTPVDSIKVPPGS--GPRHLAFSPDGKYAYVVNELS--NTVSVFDYDPSD 225 (345)
T ss_dssp TSSEEEEEE----TTTTEEEEEEE-TTS-TEEEEEEEECSTTS--SEEEEEE-TTSSEEEEEETTT--TEEEEEEEETTT
T ss_pred CCCEEEEEe----cCCCEEEEEEEeCCCceEEEeeccccccCC--CCcEEEEcCCcCEEEEecCCC--CcEEEEeecccC
Confidence 577666665 457788888887665 43 35666543 33344443 554 56655444 8999999983
Q ss_pred CceeEEEEeCCCCc------cccceEEEeCCEEEEEEe--CCeEEEEEC--CCCeEEEEee
Q 038188 290 MNWIQQFAIGPFLG------VKSPCGFWKNNAVLMESI--NGKLLLYDL--VVQEMRDLGR 340 (384)
Q Consensus 290 ~~W~~~~~i~~~~~------~~~~~~~~~~~~il~~~~--~~~l~~yd~--~t~~~~~v~~ 340 (384)
..+..+.++...+. ...-+.+.++++.++... ...+.+|++ ++++++.+..
T Consensus 226 g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 226 GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE
T ss_pred CceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE
Confidence 67777777664321 123455666776655533 456888887 5678877765
No 58
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=83.18 E-value=35 Score=33.24 Aligned_cols=92 Identities=13% Similarity=0.112 Sum_probs=49.4
Q ss_pred CeEEEEccCcccccccCCCCCCCCcccccceeeeEEeeeCCCCCEEEEEEEEEecccccccccccEEEEEEcCCCc--cc
Q 038188 119 GLITLWNPATKECRTLPNYKKNLPALATFLKRNAIFGLCDASGDYKVVFICKLWNEKIQDAYEHAHVAVYTSSTDS--WR 196 (384)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~--W~ 196 (384)
+.+.|.|-+|+||. +|......+.+ ...+||..|. =+++.+. +.-.++ .+.=+.|.+.... |+
T Consensus 57 DELHvYNTatnqWf-~PavrGDiPpg----cAA~GfvcdG----trilvFG---GMvEYG---kYsNdLYELQasRWeWk 121 (830)
T KOG4152|consen 57 DELHVYNTATNQWF-APAVRGDIPPG----CAAFGFVCDG----TRILVFG---GMVEYG---KYSNDLYELQASRWEWK 121 (830)
T ss_pred hhhhhhccccceee-cchhcCCCCCc----hhhcceEecC----ceEEEEc---cEeeec---cccchHHHhhhhhhhHh
Confidence 47899999999998 45444333322 4555665553 3455443 222122 4555666666655 55
Q ss_pred cccCC-----ccccceeecCCcceEEECceEEEEEee
Q 038188 197 VSKGN-----IKWIPYVFESYYNNANLNGVFYWFVSR 228 (384)
Q Consensus 197 ~~~~~-----~~~~~~~~~~~~~~v~~~G~lywl~~~ 228 (384)
.+... +++.|.. ..+-+.++.+.|.+.+.
T Consensus 122 rlkp~~p~nG~pPCPRl---GHSFsl~gnKcYlFGGL 155 (830)
T KOG4152|consen 122 RLKPKTPKNGPPPCPRL---GHSFSLVGNKCYLFGGL 155 (830)
T ss_pred hcCCCCCCCCCCCCCcc---CceeEEeccEeEEeccc
Confidence 54322 1122221 12345566788888764
No 59
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=82.72 E-value=2 Score=26.98 Aligned_cols=20 Identities=15% Similarity=0.255 Sum_probs=14.1
Q ss_pred CeEEEEccCcccccccCCCC
Q 038188 119 GLITLWNPATKECRTLPNYK 138 (384)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~ 138 (384)
+.++++|+.|++|.++|++|
T Consensus 29 ~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 29 NDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --EEEEETTTTEEEE--SS-
T ss_pred CCEEEEECCCCEEEECCCCC
Confidence 47899999999999997765
No 60
>PLN02772 guanylate kinase
Probab=82.64 E-value=8.9 Score=36.31 Aligned_cols=76 Identities=8% Similarity=0.078 Sum_probs=52.8
Q ss_pred cceEEECceEEEEEeecCC-CCccEEEEEEcCCceeeeec---CCCCCCCCceeEEEECCeEEEEEecCCCCeEEEEEEc
Q 038188 213 YNNANLNGVFYWFVSRAGD-FHSKLILLFRISDEEFQEIQ---RPCIPYTPFESLAPLNGSIALLHLDESNQYIEIWVMN 288 (384)
Q Consensus 213 ~~~v~~~G~lywl~~~~~~-~~~~~il~fD~~~~~~~~i~---~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~l~iW~l~ 288 (384)
..+|.+++++|....+... ...+.+.+||..+.+|..-. .|+.....+..++.-+++|.++.-... ..=+||.|+
T Consensus 28 ~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~-~~~~~w~l~ 106 (398)
T PLN02772 28 ETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSA-PDDSIWFLE 106 (398)
T ss_pred ceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCC-CccceEEEE
Confidence 4689999999999875432 24679999999999998632 122223455666666889888854332 346899997
Q ss_pred C
Q 038188 289 E 289 (384)
Q Consensus 289 ~ 289 (384)
-
T Consensus 107 ~ 107 (398)
T PLN02772 107 V 107 (398)
T ss_pred c
Confidence 4
No 61
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=80.82 E-value=4.5 Score=25.45 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=23.4
Q ss_pred ceEEEEEeec--CCCCccEEEEEEcCCceeeee-cCCC
Q 038188 220 GVFYWFVSRA--GDFHSKLILLFRISDEEFQEI-QRPC 254 (384)
Q Consensus 220 G~lywl~~~~--~~~~~~~il~fD~~~~~~~~i-~~P~ 254 (384)
+.+|...... .....+.+..||+.+.+|+.+ ++|.
T Consensus 2 ~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~ 39 (49)
T PF13415_consen 2 NKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPP 39 (49)
T ss_pred CEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCC
Confidence 4455555433 234467889999999999988 3344
No 62
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=80.12 E-value=45 Score=31.68 Aligned_cols=106 Identities=12% Similarity=0.126 Sum_probs=59.7
Q ss_pred cceEEECceEEEEEeecCCCCccEEEEEEcCCc--eeeeecCCCCCCCCceeEEEECCeEEEEEecCCCCeEEEEEEcC-
Q 038188 213 YNNANLNGVFYWFVSRAGDFHSKLILLFRISDE--EFQEIQRPCIPYTPFESLAPLNGSIALLHLDESNQYIEIWVMNE- 289 (384)
Q Consensus 213 ~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~~--~~~~i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~l~iW~l~~- 289 (384)
..++..+|.+|.... .+.+.++|+.+. .|+. ++... ..++..+|.|++...+. .+...-.++
T Consensus 250 ~sP~v~~~~vy~~~~------~g~l~ald~~tG~~~W~~-~~~~~-----~~~~~~~~~vy~~~~~g---~l~ald~~tG 314 (394)
T PRK11138 250 TTPVVVGGVVYALAY------NGNLVALDLRSGQIVWKR-EYGSV-----NDFAVDGGRIYLVDQND---RVYALDTRGG 314 (394)
T ss_pred CCcEEECCEEEEEEc------CCeEEEEECCCCCEEEee-cCCCc-----cCcEEECCEEEEEcCCC---eEEEEECCCC
Confidence 457888999998764 678999999764 5654 22110 12344556666554322 221111122
Q ss_pred -CceeEEEEeCCCCccccceEEEeCCEEEEEEeCCeEEEEECCCCeEEE
Q 038188 290 -MNWIQQFAIGPFLGVKSPCGFWKNNAVLMESINGKLLLYDLVVQEMRD 337 (384)
Q Consensus 290 -~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~~~~ 337 (384)
..|.... .. ......|+. .++.|++...++.++.+|.+|++...
T Consensus 315 ~~~W~~~~-~~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 315 VELWSQSD-LL-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred cEEEcccc-cC-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 2343211 10 011223432 37888888888899999999987643
No 63
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=78.73 E-value=44 Score=29.18 Aligned_cols=109 Identities=12% Similarity=0.063 Sum_probs=65.3
Q ss_pred eEEE--CceEEEEEeecCCCCccEEEEEEcCCceeeeecCCCCCCCCceeEEEE--CCeEEEEEecCCCCeEEEEEEcCC
Q 038188 215 NANL--NGVFYWFVSRAGDFHSKLILLFRISDEEFQEIQRPCIPYTPFESLAPL--NGSIALLHLDESNQYIEIWVMNEM 290 (384)
Q Consensus 215 ~v~~--~G~lywl~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~l~~~--~G~L~l~~~~~~~~~l~iW~l~~~ 290 (384)
+++- +|.|||.. .....|..+|+.+.+.+.+.+|.. ..++.. +|+|+++... .+.+.-++..
T Consensus 5 p~~d~~~g~l~~~D-----~~~~~i~~~~~~~~~~~~~~~~~~-----~G~~~~~~~g~l~v~~~~----~~~~~d~~~g 70 (246)
T PF08450_consen 5 PVWDPRDGRLYWVD-----IPGGRIYRVDPDTGEVEVIDLPGP-----NGMAFDRPDGRLYVADSG----GIAVVDPDTG 70 (246)
T ss_dssp EEEETTTTEEEEEE-----TTTTEEEEEETTTTEEEEEESSSE-----EEEEEECTTSEEEEEETT----CEEEEETTTT
T ss_pred eEEECCCCEEEEEE-----cCCCEEEEEECCCCeEEEEecCCC-----ceEEEEccCCEEEEEEcC----ceEEEecCCC
Confidence 4554 69999997 558899999999999999888852 233333 5677665432 2233322226
Q ss_pred ceeEEEEeCCCC-ccccc--eEEEeCCEEEEEEeC---------CeEEEEECCCCeEEEE
Q 038188 291 NWIQQFAIGPFL-GVKSP--CGFWKNNAVLMESIN---------GKLLLYDLVVQEMRDL 338 (384)
Q Consensus 291 ~W~~~~~i~~~~-~~~~~--~~~~~~~~il~~~~~---------~~l~~yd~~t~~~~~v 338 (384)
.++.+....... ....| +.+.++|.+++.... ++++.++.+ ++.+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 677666652111 12333 445567777776431 458888888 555544
No 64
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=78.56 E-value=47 Score=29.33 Aligned_cols=167 Identities=14% Similarity=0.097 Sum_probs=88.7
Q ss_pred ccEEEEEEcCCCccccccCCccccceeecCCcceEEECceEEEEEeecCCCCccEEEEEEcCC----ceeeeecCCCCC-
Q 038188 182 HAHVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNANLNGVFYWFVSRAGDFHSKLILLFRISD----EEFQEIQRPCIP- 256 (384)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~----~~~~~i~~P~~~- 256 (384)
.....+|+..|++++..... ....|....+.-||.+.-..+.. .....+-.|++.+ ..|... +...
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~-----td~FCSgg~~L~dG~ll~tGG~~--~G~~~ir~~~p~~~~~~~~w~e~--~~~m~ 115 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQ-----TDTFCSGGAFLPDGRLLQTGGDN--DGNKAIRIFTPCTSDGTCDWTES--PNDMQ 115 (243)
T ss_pred eEEEEEEecCCCcEEeccCC-----CCCcccCcCCCCCCCEEEeCCCC--ccccceEEEecCCCCCCCCceEC--ccccc
Confidence 45567888888888876432 11223344566678776554432 2345677788754 445433 2222
Q ss_pred -CCCceeEEEE-CCeEEEEEecCCCCeEEEEEEcC-----CceeEEEEe-CCCCc-cccceEEEeCCEEEEEEeCCeEEE
Q 038188 257 -YTPFESLAPL-NGSIALLHLDESNQYIEIWVMNE-----MNWIQQFAI-GPFLG-VKSPCGFWKNNAVLMESINGKLLL 327 (384)
Q Consensus 257 -~~~~~~l~~~-~G~L~l~~~~~~~~~l~iW~l~~-----~~W~~~~~i-~~~~~-~~~~~~~~~~~~il~~~~~~~l~~ 327 (384)
.........+ +|++.++.-.. ....+.|=-+. ..|...... +.... .+.-+.+..+|+||+....+ -.+
T Consensus 116 ~~RWYpT~~~L~DG~vlIvGG~~-~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~-s~i 193 (243)
T PF07250_consen 116 SGRWYPTATTLPDGRVLIVGGSN-NPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG-SII 193 (243)
T ss_pred CCCccccceECCCCCEEEEeCcC-CCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC-cEE
Confidence 2233334444 78877774433 23344443221 112111111 01111 23334456788987776654 778
Q ss_pred EECCCCeE-EEEeeccCCCCcceEEEEEEeccceeCCC
Q 038188 328 YDLVVQEM-RDLGRFSSGELGAAILIYCYKESLIRLKG 364 (384)
Q Consensus 328 yd~~t~~~-~~v~~~~~~~~~~~~~~~~y~~sL~~~~~ 364 (384)
||.+++++ +.+.. .+ ...+.++...+-+-+|-
T Consensus 194 ~d~~~n~v~~~lP~--lP---g~~R~YP~sgssvmLPl 226 (243)
T PF07250_consen 194 YDYKTNTVVRTLPD--LP---GGPRNYPASGSSVMLPL 226 (243)
T ss_pred EeCCCCeEEeeCCC--CC---CCceecCCCcceEEecC
Confidence 89999976 44332 23 33567788887776666
No 65
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=78.32 E-value=3.7 Score=25.38 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=17.4
Q ss_pred ccEEEEEEcCCCccccccCC
Q 038188 182 HAHVAVYTSSTDSWRVSKGN 201 (384)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~ 201 (384)
...+++|+..+++|+.+..+
T Consensus 27 ~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 27 TNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp EEEEEEEETTTTEEEEEEEE
T ss_pred eeeEEEEeCCCCEEEEcCCC
Confidence 78899999999999987643
No 66
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=77.47 E-value=50 Score=31.02 Aligned_cols=104 Identities=12% Similarity=0.069 Sum_probs=55.4
Q ss_pred ceEEECceEEEEEeecCCCCccEEEEEEcCCc--eeeeecCCCCCCCCceeEEEECCeEEEEEecCCCCeEEEEEEcC--
Q 038188 214 NNANLNGVFYWFVSRAGDFHSKLILLFRISDE--EFQEIQRPCIPYTPFESLAPLNGSIALLHLDESNQYIEIWVMNE-- 289 (384)
Q Consensus 214 ~~v~~~G~lywl~~~~~~~~~~~il~fD~~~~--~~~~i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~l~iW~l~~-- 289 (384)
.++..+|.+|.... .+.+.+||.++. .|+. +++... ....+..++.+++...+ ..+-.+-.+.
T Consensus 60 ~p~v~~~~v~v~~~------~g~v~a~d~~tG~~~W~~-~~~~~~---~~~p~v~~~~v~v~~~~---g~l~ald~~tG~ 126 (377)
T TIGR03300 60 QPAVAGGKVYAADA------DGTVVALDAETGKRLWRV-DLDERL---SGGVGADGGLVFVGTEK---GEVIALDAEDGK 126 (377)
T ss_pred ceEEECCEEEEECC------CCeEEEEEccCCcEeeee-cCCCCc---ccceEEcCCEEEEEcCC---CEEEEEECCCCc
Confidence 46788898887653 578999998654 4542 333322 11233345555543322 2222222212
Q ss_pred CceeEEEEeCCCCccccceEEEeCCEEEEEEeCCeEEEEECCCCeE
Q 038188 290 MNWIQQFAIGPFLGVKSPCGFWKNNAVLMESINGKLLLYDLVVQEM 335 (384)
Q Consensus 290 ~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~~ 335 (384)
..|.... . ......|.. .++.+++...++.++.+|+++++.
T Consensus 127 ~~W~~~~--~-~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~ 167 (377)
T TIGR03300 127 ELWRAKL--S-SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGER 167 (377)
T ss_pred Eeeeecc--C-ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCce
Confidence 3454321 1 111122222 366777777778899999998764
No 67
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=76.43 E-value=66 Score=29.95 Aligned_cols=149 Identities=14% Similarity=0.084 Sum_probs=79.5
Q ss_pred ccEEEEEEcCCCc--cccccCCccccceeecCCcceEE-ECce-EEEEEeecCCCCccEEEEEEcC--Cceeeee----c
Q 038188 182 HAHVAVYTSSTDS--WRVSKGNIKWIPYVFESYYNNAN-LNGV-FYWFVSRAGDFHSKLILLFRIS--DEEFQEI----Q 251 (384)
Q Consensus 182 ~~~~~vyss~t~~--W~~~~~~~~~~~~~~~~~~~~v~-~~G~-lywl~~~~~~~~~~~il~fD~~--~~~~~~i----~ 251 (384)
..++.+|+..++. ....... ..+. ...++..+. -+|. +|... ...+.|.+|++. +..++.+ .
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~--~~~~-G~GPRh~~f~pdg~~~Yv~~-----e~s~~v~v~~~~~~~g~~~~~~~~~~ 236 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSI--KVPP-GSGPRHLAFSPDGKYAYVVN-----ELSNTVSVFDYDPSDGSLTEIQTIST 236 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEE--ECST-TSSEEEEEE-TTSSEEEEEE-----TTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred CCEEEEEEEeCCCceEEEeecc--cccc-CCCCcEEEEcCCcCEEEEec-----CCCCcEEEEeecccCCceeEEEEeee
Confidence 5678888887665 4332111 0010 001111222 2555 55555 447777777776 6666553 3
Q ss_pred CCCCCCC--CceeEEEE-CCe-EEEEEecCCCCeEEEEEEcC--CceeEEEEeCCCCccccceEEEeCCEEEEEE--eCC
Q 038188 252 RPCIPYT--PFESLAPL-NGS-IALLHLDESNQYIEIWVMNE--MNWIQQFAIGPFLGVKSPCGFWKNNAVLMES--ING 323 (384)
Q Consensus 252 ~P~~~~~--~~~~l~~~-~G~-L~l~~~~~~~~~l~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~--~~~ 323 (384)
+|..... ....+... +|+ ||+.... ...+.++.++. +.-.++..+.......+.+.+.++++.++.. ..+
T Consensus 237 ~~~~~~~~~~~~~i~ispdg~~lyvsnr~--~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~ 314 (345)
T PF10282_consen 237 LPEGFTGENAPAEIAISPDGRFLYVSNRG--SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSN 314 (345)
T ss_dssp CETTSCSSSSEEEEEE-TTSSEEEEEECT--TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTT
T ss_pred ccccccccCCceeEEEecCCCEEEEEecc--CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC
Confidence 3443322 33455555 565 5554444 48999999965 4555555553222235667777777655543 345
Q ss_pred eEEEE--ECCCCeEEEEee
Q 038188 324 KLLLY--DLVVQEMRDLGR 340 (384)
Q Consensus 324 ~l~~y--d~~t~~~~~v~~ 340 (384)
.+.+| |.+|++++.+..
T Consensus 315 ~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 315 TVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp EEEEEEEETTTTEEEEEEE
T ss_pred eEEEEEEeCCCCcEEEecc
Confidence 56666 668899888764
No 68
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=76.16 E-value=49 Score=30.15 Aligned_cols=109 Identities=11% Similarity=0.156 Sum_probs=57.4
Q ss_pred ceEEECceEEEEEeecCCCCccEEEEEEcCCceeee-ecCCCCCCCCceeEEEECCeE---EEEEecCCCCeEEEEEEcC
Q 038188 214 NNANLNGVFYWFVSRAGDFHSKLILLFRISDEEFQE-IQRPCIPYTPFESLAPLNGSI---ALLHLDESNQYIEIWVMNE 289 (384)
Q Consensus 214 ~~v~~~G~lywl~~~~~~~~~~~il~fD~~~~~~~~-i~~P~~~~~~~~~l~~~~G~L---~l~~~~~~~~~l~iW~l~~ 289 (384)
.+|.++|..- ..+ .....|-.||+.+..=.. +--|.. ........+.+ .++...+ .+.+.||..+
T Consensus 47 tavAVs~~~~-aSG----ssDetI~IYDm~k~~qlg~ll~Hag----sitaL~F~~~~S~shLlS~sd-DG~i~iw~~~- 115 (362)
T KOG0294|consen 47 TALAVSGPYV-ASG----SSDETIHIYDMRKRKQLGILLSHAG----SITALKFYPPLSKSHLLSGSD-DGHIIIWRVG- 115 (362)
T ss_pred eEEEecceeE-ecc----CCCCcEEEEeccchhhhcceecccc----ceEEEEecCCcchhheeeecC-CCcEEEEEcC-
Confidence 4677777632 222 457788899987654322 222321 22222222322 3443322 3789999887
Q ss_pred CceeEEEEeCCCCccccceEEEeCCEEEEE-EeCCeEEEEECCCCe
Q 038188 290 MNWIQQFAIGPFLGVKSPCGFWKNNAVLME-SINGKLLLYDLVVQE 334 (384)
Q Consensus 290 ~~W~~~~~i~~~~~~~~~~~~~~~~~il~~-~~~~~l~~yd~~t~~ 334 (384)
+|..+.++.++..-...+.+++.+++-+. .++..+-.||+-+++
T Consensus 116 -~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 116 -SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred -CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 69888888766533344555555554332 333334444444443
No 69
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=76.07 E-value=57 Score=29.95 Aligned_cols=109 Identities=12% Similarity=0.032 Sum_probs=59.8
Q ss_pred CceEEEEEeecCCCCccEEEEEEcCCceeeeecCCCCCCCCceeEEEECCeEEEEEecCCCCeEEEEEEcC-CceeEEEE
Q 038188 219 NGVFYWFVSRAGDFHSKLILLFRISDEEFQEIQRPCIPYTPFESLAPLNGSIALLHLDESNQYIEIWVMNE-MNWIQQFA 297 (384)
Q Consensus 219 ~G~lywl~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~l~iW~l~~-~~W~~~~~ 297 (384)
.+.|||.. .....|..+|+.+..-+.+..|... ....+...+|.|..+.. .+.++..+. ..|+....
T Consensus 36 ~~~L~w~D-----I~~~~i~r~~~~~g~~~~~~~p~~~--~~~~~~d~~g~Lv~~~~-----g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 36 RGALLWVD-----ILGGRIHRLDPETGKKRVFPSPGGF--SSGALIDAGGRLIACEH-----GVRLLDPDTGGKITLLAE 103 (307)
T ss_pred CCEEEEEe-----CCCCeEEEecCCcCceEEEECCCCc--ccceeecCCCeEEEEcc-----ccEEEeccCCceeEEecc
Confidence 35689987 6689999999999999999888755 22223333444433322 122222232 44444433
Q ss_pred eCCCCccccc--eEEEeCCEEEEEEeC------------CeEEEEECCCCeEEEEe
Q 038188 298 IGPFLGVKSP--CGFWKNNAVLMESIN------------GKLLLYDLVVQEMRDLG 339 (384)
Q Consensus 298 i~~~~~~~~~--~~~~~~~~il~~~~~------------~~l~~yd~~t~~~~~v~ 339 (384)
........+| ..+..+|.+.+.+.. +.++.+|+.+++.+.+.
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~ 159 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLD 159 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeec
Confidence 3221111122 334446666665333 35888888666655543
No 70
>smart00612 Kelch Kelch domain.
Probab=75.85 E-value=10 Score=22.97 Aligned_cols=21 Identities=10% Similarity=0.273 Sum_probs=16.4
Q ss_pred ccEEEEEEcCCceeeee-cCCC
Q 038188 234 SKLILLFRISDEEFQEI-QRPC 254 (384)
Q Consensus 234 ~~~il~fD~~~~~~~~i-~~P~ 254 (384)
...+..||+.+.+|+.+ ++|.
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~~ 35 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMPT 35 (47)
T ss_pred eeeEEEECCCCCeEccCCCCCC
Confidence 46788999999999986 3443
No 71
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=74.36 E-value=8.9 Score=24.05 Aligned_cols=30 Identities=7% Similarity=0.120 Sum_probs=21.9
Q ss_pred EeCCEEEEEEeC---------CeEEEEECCCCeEEEEee
Q 038188 311 WKNNAVLMESIN---------GKLLLYDLVVQEMRDLGR 340 (384)
Q Consensus 311 ~~~~~il~~~~~---------~~l~~yd~~t~~~~~v~~ 340 (384)
..+++|++..+. ..+..||++|++|+++..
T Consensus 9 ~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 9 VLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred EECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 347777666332 258999999999998764
No 72
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=73.95 E-value=70 Score=33.53 Aligned_cols=31 Identities=6% Similarity=0.214 Sum_probs=24.5
Q ss_pred cceEEECceEEEEEeecCCCCccEEEEEEcC--Cceeee
Q 038188 213 YNNANLNGVFYWFVSRAGDFHSKLILLFRIS--DEEFQE 249 (384)
Q Consensus 213 ~~~v~~~G~lywl~~~~~~~~~~~il~fD~~--~~~~~~ 249 (384)
..++.++|++|..+. .+.++++|.. ++.|+.
T Consensus 188 ~TPlvvgg~lYv~t~------~~~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 188 ATPLKVGDTLYLCTP------HNKVIALDAATGKEKWKF 220 (764)
T ss_pred cCCEEECCEEEEECC------CCeEEEEECCCCcEEEEE
Confidence 468999999999764 6789999986 556765
No 73
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=73.86 E-value=62 Score=32.28 Aligned_cols=111 Identities=14% Similarity=0.142 Sum_probs=61.4
Q ss_pred cceEEECceEEEEEeecCCCCccEEEEEEcCC--ceeee-ecCCCCCC------CCceeEEEECCeEEEEEecCCCCeEE
Q 038188 213 YNNANLNGVFYWFVSRAGDFHSKLILLFRISD--EEFQE-IQRPCIPY------TPFESLAPLNGSIALLHLDESNQYIE 283 (384)
Q Consensus 213 ~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~--~~~~~-i~~P~~~~------~~~~~l~~~~G~L~l~~~~~~~~~l~ 283 (384)
..++..+|.+|.... .+.|.++|..+ +.|+. ...|.... .....++..+|++++...+. .
T Consensus 63 stPvv~~g~vyv~s~------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg-----~ 131 (527)
T TIGR03075 63 SQPLVVDGVMYVTTS------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDA-----R 131 (527)
T ss_pred cCCEEECCEEEEECC------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCC-----E
Confidence 357889999998653 56899999865 56664 33332210 01122455567776654332 3
Q ss_pred EEEEcC----CceeEEEEeCCC---CccccceEEEeCCEEEEEEe------CCeEEEEECCCCeEEE
Q 038188 284 IWVMNE----MNWIQQFAIGPF---LGVKSPCGFWKNNAVLMESI------NGKLLLYDLVVQEMRD 337 (384)
Q Consensus 284 iW~l~~----~~W~~~~~i~~~---~~~~~~~~~~~~~~il~~~~------~~~l~~yd~~t~~~~~ 337 (384)
+..|+- ..|..... ++. .....|+.. ++.|++... ++.++.||.+|++...
T Consensus 132 l~ALDa~TGk~~W~~~~~-~~~~~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 132 LVALDAKTGKVVWSKKNG-DYKAGYTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred EEEEECCCCCEEeecccc-cccccccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCceeE
Confidence 444443 45654321 111 111234332 567766542 4679999999987543
No 74
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=73.46 E-value=11 Score=21.05 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=20.9
Q ss_pred eCCEEEEEEeCCeEEEEECCCCeEEE
Q 038188 312 KNNAVLMESINGKLLLYDLVVQEMRD 337 (384)
Q Consensus 312 ~~~~il~~~~~~~l~~yd~~t~~~~~ 337 (384)
.++.+++...++.++.+|.++++...
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEEE
Confidence 36678888888999999999987643
No 75
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=71.65 E-value=45 Score=30.91 Aligned_cols=122 Identities=15% Similarity=0.125 Sum_probs=64.9
Q ss_pred ceEEEC--ceEEEEEeecCCCCccEEEEEEcCCceeeee---cCCCCC---CC---CceeEEEE---CCeEEEEEe-cC-
Q 038188 214 NNANLN--GVFYWFVSRAGDFHSKLILLFRISDEEFQEI---QRPCIP---YT---PFESLAPL---NGSIALLHL-DE- 277 (384)
Q Consensus 214 ~~v~~~--G~lywl~~~~~~~~~~~il~fD~~~~~~~~i---~~P~~~---~~---~~~~l~~~---~G~L~l~~~-~~- 277 (384)
.+++.+ |.+||.+. .+.|...|++.+.-... ++-... .+ ...++..+ .|+||++-. ..
T Consensus 188 ~~~~~~~~~~~~F~Sy------~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~ 261 (342)
T PF06433_consen 188 HPAYSRDGGRLYFVSY------EGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGE 261 (342)
T ss_dssp --EEETTTTEEEEEBT------TSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--T
T ss_pred ccceECCCCeEEEEec------CCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCC
Confidence 345443 67999876 88999999988764432 221101 11 12233332 668888722 11
Q ss_pred ---CCCeEEEEEEcCCceeEEEEeCCCCccccceEEEeCCE-EEEE-E-eCCeEEEEECCCCeE-EEEeecc
Q 038188 278 ---SNQYIEIWVMNEMNWIQQFAIGPFLGVKSPCGFWKNNA-VLME-S-INGKLLLYDLVVQEM-RDLGRFS 342 (384)
Q Consensus 278 ---~~~~l~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~-il~~-~-~~~~l~~yd~~t~~~-~~v~~~~ 342 (384)
....=+||+++-.+=.++.++.... -..-+++..+++ .|+. . .++.+++||..|++. +++.-.|
T Consensus 262 gsHKdpgteVWv~D~~t~krv~Ri~l~~-~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 262 GSHKDPGTEVWVYDLKTHKRVARIPLEH-PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLG 332 (342)
T ss_dssp T-TTS-EEEEEEEETTTTEEEEEEEEEE-EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---S
T ss_pred CCccCCceEEEEEECCCCeEEEEEeCCC-ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccC
Confidence 2357789999874455666664211 112356666654 4443 3 356799999999875 3444334
No 76
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=70.28 E-value=80 Score=28.19 Aligned_cols=138 Identities=7% Similarity=-0.029 Sum_probs=77.4
Q ss_pred ccEEEEEEcCCCccccccCCccccceeecCCcceEEECceEEEEEeecCCCCccEEEEEEcCCcee-eeecCCCCCCCCc
Q 038188 182 HAHVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNANLNGVFYWFVSRAGDFHSKLILLFRISDEEF-QEIQRPCIPYTPF 260 (384)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~~~~ 260 (384)
...+..|+..|++=......++.. +......+++.+|-++.. .+..+.||..+-+- ..++.| +..
T Consensus 67 ~S~l~~~d~~tg~~~~~~~l~~~~-----FgEGit~~~d~l~qLTWk-----~~~~f~yd~~tl~~~~~~~y~----~EG 132 (264)
T PF05096_consen 67 QSSLRKVDLETGKVLQSVPLPPRY-----FGEGITILGDKLYQLTWK-----EGTGFVYDPNTLKKIGTFPYP----GEG 132 (264)
T ss_dssp EEEEEEEETTTSSEEEEEE-TTT-------EEEEEEETTEEEEEESS-----SSEEEEEETTTTEEEEEEE-S----SS-
T ss_pred cEEEEEEECCCCcEEEEEECCccc-----cceeEEEECCEEEEEEec-----CCeEEEEccccceEEEEEecC----Ccc
Confidence 688899999998644333232111 123456789999999963 77889999975322 334555 345
Q ss_pred eeEEEECCeEEEEEecCCCCeEEEEEEcCCceeEEEEeCCCCccccceEEEe-----CCEEEEEEe-CCeEEEEECCCCe
Q 038188 261 ESLAPLNGSIALLHLDESNQYIEIWVMNEMNWIQQFAIGPFLGVKSPCGFWK-----NNAVLMESI-NGKLLLYDLVVQE 334 (384)
Q Consensus 261 ~~l~~~~G~L~l~~~~~~~~~l~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~-----~~~il~~~~-~~~l~~yd~~t~~ 334 (384)
+.|..-+..|.+..... .++.++-.....+.+|.-. .-..|+...+ +|.|+-... ...++..|++|++
T Consensus 133 WGLt~dg~~Li~SDGS~-----~L~~~dP~~f~~~~~i~V~-~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~ 206 (264)
T PF05096_consen 133 WGLTSDGKRLIMSDGSS-----RLYFLDPETFKEVRTIQVT-DNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGK 206 (264)
T ss_dssp -EEEECSSCEEEE-SSS-----EEEEE-TTT-SEEEEEE-E-ETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-B
T ss_pred eEEEcCCCEEEEECCcc-----ceEEECCcccceEEEEEEE-ECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCe
Confidence 56665555666544322 5666665445555555421 1233433221 778776644 4569999999999
Q ss_pred EEEEe
Q 038188 335 MRDLG 339 (384)
Q Consensus 335 ~~~v~ 339 (384)
+...-
T Consensus 207 V~~~i 211 (264)
T PF05096_consen 207 VVGWI 211 (264)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87643
No 77
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=68.88 E-value=18 Score=27.52 Aligned_cols=44 Identities=7% Similarity=-0.013 Sum_probs=29.5
Q ss_pred CeEEEEccCcccccccCCCCCCCCcccccceeeeEEeeeCCCCCEEEEEEEE
Q 038188 119 GLITLWNPATKECRTLPNYKKNLPALATFLKRNAIFGLCDASGDYKVVFICK 170 (384)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~ 170 (384)
-.+++.||.|+.|...-+.+.. .....+-+++..+.|.|+....
T Consensus 9 A~Vm~~d~~tk~W~P~~~~~~~--------ls~V~~~~~~~~~~yrIvg~~~ 52 (111)
T cd01207 9 ASVMVYDDSNKKWVPAGGGSQG--------FSRVQIYHHPRNNTFRVVGRKL 52 (111)
T ss_pred EEeeEEcCCCCcEEcCCCCCCC--------cceEEEEEcCCCCEEEEEEeec
Confidence 3568889999996544221111 3455667788888999998643
No 78
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=68.74 E-value=5 Score=25.25 Aligned_cols=21 Identities=5% Similarity=0.082 Sum_probs=17.9
Q ss_pred CeEEEEccCcccccccCCCCC
Q 038188 119 GLITLWNPATKECRTLPNYKK 139 (384)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~ 139 (384)
++++++||.|++|.+++..|.
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~ 39 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPP 39 (49)
T ss_pred cCEEEEECCCCEEEECCCCCC
Confidence 578999999999999976654
No 79
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=67.48 E-value=1.1e+02 Score=28.72 Aligned_cols=137 Identities=16% Similarity=0.117 Sum_probs=73.4
Q ss_pred ccEEEEEEcCCCccccccCCccccceeecCCcc-eEEECceEEEEEeecCCCCccEEEEEEcCCce--eeeecCCCCCCC
Q 038188 182 HAHVAVYTSSTDSWRVSKGNIKWIPYVFESYYN-NANLNGVFYWFVSRAGDFHSKLILLFRISDEE--FQEIQRPCIPYT 258 (384)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~-~v~~~G~lywl~~~~~~~~~~~il~fD~~~~~--~~~i~~P~~~~~ 258 (384)
..........+..|...... ...... ... +++.+|++|.... .+.|.+||.++.+ |+.-... ....
T Consensus 34 ~~~~~~~~~g~~~W~~~~~~--~~~~~~--~~~~~~~~dg~v~~~~~------~G~i~A~d~~~g~~~W~~~~~~-~~~~ 102 (370)
T COG1520 34 LVAVANNTSGTLLWSVSLGS--GGGGIY--AGPAPADGDGTVYVGTR------DGNIFALNPDTGLVKWSYPLLG-AVAQ 102 (370)
T ss_pred ceEEEcccCcceeeeeeccc--CccceE--eccccEeeCCeEEEecC------CCcEEEEeCCCCcEEecccCcC-ccee
Confidence 34555666677788643111 001111 112 5999999999853 5589999998776 7553332 0111
Q ss_pred CceeEEEECCeEEEEEecCCCCeEEEEEEcC----CceeEEEEeCCCCccccceEEEeCCEEEEEEeCCeEEEEECCCCe
Q 038188 259 PFESLAPLNGSIALLHLDESNQYIEIWVMNE----MNWIQQFAIGPFLGVKSPCGFWKNNAVLMESINGKLLLYDLVVQE 334 (384)
Q Consensus 259 ~~~~l~~~~G~L~l~~~~~~~~~l~iW~l~~----~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~ 334 (384)
....+...+|++++-.... .++.|+. ..|.....- . .....+ .+..++.+++.+.++.++..|.+|++
T Consensus 103 ~~~~~~~~~G~i~~g~~~g-----~~y~ld~~~G~~~W~~~~~~-~-~~~~~~-~v~~~~~v~~~s~~g~~~al~~~tG~ 174 (370)
T COG1520 103 LSGPILGSDGKIYVGSWDG-----KLYALDASTGTLVWSRNVGG-S-PYYASP-PVVGDGTVYVGTDDGHLYALNADTGT 174 (370)
T ss_pred ccCceEEeCCeEEEecccc-----eEEEEECCCCcEEEEEecCC-C-eEEecC-cEEcCcEEEEecCCCeEEEEEccCCc
Confidence 1122233366755543322 5566654 345543221 0 101111 12236677776667789999999887
Q ss_pred EEE
Q 038188 335 MRD 337 (384)
Q Consensus 335 ~~~ 337 (384)
.+.
T Consensus 175 ~~W 177 (370)
T COG1520 175 LKW 177 (370)
T ss_pred EEE
Confidence 643
No 80
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=65.66 E-value=59 Score=28.57 Aligned_cols=117 Identities=11% Similarity=0.152 Sum_probs=69.2
Q ss_pred ceEEECceEEEEEeecCCCCccEEEEEEcCCcee-eeecCCCCCC----------CCceeEEEECCeEEEEEecC-CCCe
Q 038188 214 NNANLNGVFYWFVSRAGDFHSKLILLFRISDEEF-QEIQRPCIPY----------TPFESLAPLNGSIALLHLDE-SNQY 281 (384)
Q Consensus 214 ~~v~~~G~lywl~~~~~~~~~~~il~fD~~~~~~-~~i~~P~~~~----------~~~~~l~~~~G~L~l~~~~~-~~~~ 281 (384)
.-|+.||.+|... .....|+.||+.++.- ....+|.... .....+++.+..|.++.... ....
T Consensus 72 g~VVynGs~yynk-----~~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~ 146 (249)
T KOG3545|consen 72 GHVVYNGSLYYNK-----AGTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGT 146 (249)
T ss_pred ceEEEcceEEeec-----cCCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCc
Confidence 5799999999987 4578999999998544 3456665441 22356788888888885433 3356
Q ss_pred EEEEEEcC------CceeEEEEeCCCCccccceEEEeCCEEEEEEe----CCe-EEEEECCCCeEEEEee
Q 038188 282 IEIWVMNE------MNWIQQFAIGPFLGVKSPCGFWKNNAVLMESI----NGK-LLLYDLVVQEMRDLGR 340 (384)
Q Consensus 282 l~iW~l~~------~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~----~~~-l~~yd~~t~~~~~v~~ 340 (384)
+.|-.|+. ..|.--.. . .... -++.--|.+..... +.. -+.||..+++-+.+.+
T Consensus 147 iv~skLdp~tl~~e~tW~T~~~--k-~~~~--~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~i 211 (249)
T KOG3545|consen 147 IVLSKLDPETLEVERTWNTTLP--K-RSAG--NAFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERIDL 211 (249)
T ss_pred EEeeccCHHHhheeeeeccccC--C-CCcC--ceEEEeeeeEEEeccccCCceEEEEEEcCCCceecccc
Confidence 66677765 45633211 1 1000 01111233333221 122 3789999988877765
No 81
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=65.47 E-value=1.2e+02 Score=28.42 Aligned_cols=106 Identities=8% Similarity=0.076 Sum_probs=59.4
Q ss_pred cceEEECceEEEEEeecCCCCccEEEEEEcCCc--eeeeecCCCCCCCCceeEEEECCeEEEEEecCCCCeEEEEEEcC-
Q 038188 213 YNNANLNGVFYWFVSRAGDFHSKLILLFRISDE--EFQEIQRPCIPYTPFESLAPLNGSIALLHLDESNQYIEIWVMNE- 289 (384)
Q Consensus 213 ~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~~--~~~~i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~l~iW~l~~- 289 (384)
..++..+|.+|.... .+.+.++|..+. .|+. +.+. ....+..+|.+++...+ ..+..+-.++
T Consensus 235 ~~p~~~~~~vy~~~~------~g~l~a~d~~tG~~~W~~-~~~~-----~~~p~~~~~~vyv~~~~---G~l~~~d~~tG 299 (377)
T TIGR03300 235 GDPVVDGGQVYAVSY------QGRVAALDLRSGRVLWKR-DASS-----YQGPAVDDNRLYVTDAD---GVVVALDRRSG 299 (377)
T ss_pred CccEEECCEEEEEEc------CCEEEEEECCCCcEEEee-ccCC-----ccCceEeCCEEEEECCC---CeEEEEECCCC
Confidence 346777898888664 678999999755 4433 2211 12233445666554321 3333333333
Q ss_pred -CceeEEEEeCCCCccccceEEEeCCEEEEEEeCCeEEEEECCCCeEEE
Q 038188 290 -MNWIQQFAIGPFLGVKSPCGFWKNNAVLMESINGKLLLYDLVVQEMRD 337 (384)
Q Consensus 290 -~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~~~~ 337 (384)
..|.... +. ......|.. .++.|++...++.++.+|.++++...
T Consensus 300 ~~~W~~~~-~~-~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 300 SELWKNDE-LK-YRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVA 344 (377)
T ss_pred cEEEcccc-cc-CCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 3454311 11 111223332 36788888888899999999887643
No 82
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=62.18 E-value=47 Score=32.05 Aligned_cols=98 Identities=11% Similarity=0.144 Sum_probs=50.8
Q ss_pred ccEEEEEEcCCceeeee-cCCCCCCCCceeEEEECCeEEEEEecCCCCeEEEEEEcC-CceeEEEEeCCCCccccceEEE
Q 038188 234 SKLILLFRISDEEFQEI-QRPCIPYTPFESLAPLNGSIALLHLDESNQYIEIWVMNE-MNWIQQFAIGPFLGVKSPCGFW 311 (384)
Q Consensus 234 ~~~il~fD~~~~~~~~i-~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~l~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~ 311 (384)
.+.|..=--+..+|..+ .++... ..-+..++++|.+...+... .|+-.+= +.=.+.|+ .+.. ..|-..-
T Consensus 205 rGklWis~d~g~tFeK~vdl~~~v----S~PmIV~~RvYFlsD~eG~G--nlYSvdldGkDlrrHT--nFtd-YY~R~~n 275 (668)
T COG4946 205 RGKLWISSDGGKTFEKFVDLDGNV----SSPMIVGERVYFLSDHEGVG--NLYSVDLDGKDLRRHT--NFTD-YYPRNAN 275 (668)
T ss_pred cceEEEEecCCcceeeeeecCCCc----CCceEEcceEEEEecccCcc--ceEEeccCCchhhhcC--Cchh-ccccccC
Confidence 34444443444477764 776433 33466788888886655222 2232221 10001111 1110 1121122
Q ss_pred eC-CEEEEEEeCCeEEEEECCCCeEEEEeec
Q 038188 312 KN-NAVLMESINGKLLLYDLVVQEMRDLGRF 341 (384)
Q Consensus 312 ~~-~~il~~~~~~~l~~yd~~t~~~~~v~~~ 341 (384)
.+ ..|+|+.. +.++.||++|..++++++.
T Consensus 276 sDGkrIvFq~~-GdIylydP~td~lekldI~ 305 (668)
T COG4946 276 SDGKRIVFQNA-GDIYLYDPETDSLEKLDIG 305 (668)
T ss_pred CCCcEEEEecC-CcEEEeCCCcCcceeeecC
Confidence 24 45655544 5699999999999999883
No 83
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=61.79 E-value=6.3 Score=36.12 Aligned_cols=39 Identities=15% Similarity=0.393 Sum_probs=33.5
Q ss_pred cccCCCCHHHHHHHHccCCh--------hhhhhhhcccHhhHhhcCC
Q 038188 9 ASSMLMPEDVRLEILSRLPV--------KSLMRLRCVCKSWYALIEN 47 (384)
Q Consensus 9 ~~~~~LP~dll~eIl~rLp~--------~~l~r~r~VcK~W~~li~~ 47 (384)
..|+.||.+++.+|+.|+.. ++.+.+..|||.|+.+..+
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 46789999999999999873 4788999999999997654
No 84
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=61.36 E-value=14 Score=21.77 Aligned_cols=25 Identities=16% Similarity=0.089 Sum_probs=19.8
Q ss_pred CEEEEEEeCCeEEEEECCCCeEEEE
Q 038188 314 NAVLMESINGKLLLYDLVVQEMRDL 338 (384)
Q Consensus 314 ~~il~~~~~~~l~~yd~~t~~~~~v 338 (384)
+.|++...++.++.+|.+|++...-
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~ 25 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWK 25 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEE
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEe
Confidence 4566777788999999999986553
No 85
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=60.67 E-value=36 Score=26.46 Aligned_cols=55 Identities=13% Similarity=0.140 Sum_probs=36.0
Q ss_pred CCEEEEEEe-----CCeEEEEECCCCeEEEEeec-cCCCCcceEEEEEEeccceeCCCCCc
Q 038188 313 NNAVLMESI-----NGKLLLYDLVVQEMRDLGRF-SSGELGAAILIYCYKESLIRLKGEEE 367 (384)
Q Consensus 313 ~~~il~~~~-----~~~l~~yd~~t~~~~~v~~~-~~~~~~~~~~~~~y~~sL~~~~~~~~ 367 (384)
||.++.... ...++.||+++++++.+... .............|..+|.-+.....
T Consensus 5 nGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~ 65 (129)
T PF08268_consen 5 NGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQ 65 (129)
T ss_pred CcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCC
Confidence 666655422 35699999999999999884 11111145567778888877654443
No 86
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=59.50 E-value=1.5e+02 Score=27.61 Aligned_cols=129 Identities=9% Similarity=-0.010 Sum_probs=65.9
Q ss_pred cceEEEe-eCCeEEEEccCcccccccCCCCCCCCcccccceeeeEEeeeCCCCCEEEEEEEEEecccccccccccEEEEE
Q 038188 110 DGIFCLC-DGGLITLWNPATKECRTLPNYKKNLPALATFLKRNAIFGLCDASGDYKVVFICKLWNEKIQDAYEHAHVAVY 188 (384)
Q Consensus 110 ~GLl~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy 188 (384)
+.-|+.. ......|+++.|+....+|....... . ...+.. .+. +..+................+|++
T Consensus 76 gskIv~~d~~~~t~vyDt~t~av~~~P~l~~pk~--~---pisv~V-----G~~--LY~m~~~~~~~~~~~~~~~~FE~l 143 (342)
T PF07893_consen 76 GSKIVAVDQSGRTLVYDTDTRAVATGPRLHSPKR--C---PISVSV-----GDK--LYAMDRSPFPEPAGRPDFPCFEAL 143 (342)
T ss_pred CCeEEEEcCCCCeEEEECCCCeEeccCCCCCCCc--c---eEEEEe-----CCe--EEEeeccCccccccCccceeEEEe
Confidence 4444444 35679999999999999988653210 0 111111 112 333322211110000000145544
Q ss_pred --E--------cCCCccccccCCccccceeec-----CCcceEEECceEEEEEeecCCCCccEEEEEEcCCceeeee---
Q 038188 189 --T--------SSTDSWRVSKGNIKWIPYVFE-----SYYNNANLNGVFYWFVSRAGDFHSKLILLFRISDEEFQEI--- 250 (384)
Q Consensus 189 --s--------s~t~~W~~~~~~~~~~~~~~~-----~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~~~~~~i--- 250 (384)
+ .++-+|+.+... ++..... -...+|+ +|.--|+... .....-.+||.++.+|+..
T Consensus 144 ~~~~~~~~~~~~~~w~W~~LP~P--Pf~~~~~~~~~~i~sYavv-~g~~I~vS~~---~~~~GTysfDt~~~~W~~~GdW 217 (342)
T PF07893_consen 144 VYRPPPDDPSPEESWSWRSLPPP--PFVRDRRYSDYRITSYAVV-DGRTIFVSVN---GRRWGTYSFDTESHEWRKHGDW 217 (342)
T ss_pred ccccccccccCCCcceEEcCCCC--CccccCCcccceEEEEEEe-cCCeEEEEec---CCceEEEEEEcCCcceeeccce
Confidence 3 223366765432 2222111 2234666 8988888642 1113789999999999986
Q ss_pred cCCCCC
Q 038188 251 QRPCIP 256 (384)
Q Consensus 251 ~~P~~~ 256 (384)
.||..-
T Consensus 218 ~LPF~G 223 (342)
T PF07893_consen 218 MLPFHG 223 (342)
T ss_pred ecCcCC
Confidence 777754
No 87
>PF13013 F-box-like_2: F-box-like domain
Probab=59.31 E-value=7.1 Score=29.62 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=24.3
Q ss_pred cCCCCHHHHHHHHccCChhhhhhhhcccH
Q 038188 11 SMLMPEDVRLEILSRLPVKSLMRLRCVCK 39 (384)
Q Consensus 11 ~~~LP~dll~eIl~rLp~~~l~r~r~VcK 39 (384)
..+||+||+..|+..-..+++...-..|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 56899999999999999888866666655
No 88
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=58.68 E-value=13 Score=36.02 Aligned_cols=125 Identities=12% Similarity=0.115 Sum_probs=71.7
Q ss_pred ceEEECc--eEEEEEeecCCCCccEEEEEEcCCceeeeecC----CCCCCCCceeEEEECCeEEEEEe-------cCCCC
Q 038188 214 NNANLNG--VFYWFVSRAGDFHSKLILLFRISDEEFQEIQR----PCIPYTPFESLAPLNGSIALLHL-------DESNQ 280 (384)
Q Consensus 214 ~~v~~~G--~lywl~~~~~~~~~~~il~fD~~~~~~~~i~~----P~~~~~~~~~l~~~~G~L~l~~~-------~~~~~ 280 (384)
..|...| ++|-..+=++...-.-..+|+...+.|..|.. |......+-.+-+...+||++.. .....
T Consensus 265 QMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~ 344 (723)
T KOG2437|consen 265 QMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSL 344 (723)
T ss_pred eEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhcccccccccccc
Confidence 3566666 78776643222333456788999999999744 43332223333445667888721 12245
Q ss_pred eEEEEEEcC--CceeEEEEeC-----CCCccccceEEEeC-CEEEEEEe-----C----CeEEEEECCCCeEEEE
Q 038188 281 YIEIWVMNE--MNWIQQFAIG-----PFLGVKSPCGFWKN-NAVLMESI-----N----GKLLLYDLVVQEMRDL 338 (384)
Q Consensus 281 ~l~iW~l~~--~~W~~~~~i~-----~~~~~~~~~~~~~~-~~il~~~~-----~----~~l~~yd~~t~~~~~v 338 (384)
+-++|+++. ..|..+.-=. |...+-+-+.+.++ +.|++..+ + +.++.||...+.|+.+
T Consensus 345 RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l 419 (723)
T KOG2437|consen 345 RSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLL 419 (723)
T ss_pred ccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHH
Confidence 778999998 7899864211 11112233444433 33444321 1 2499999999988643
No 89
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.82 E-value=1.6e+02 Score=27.44 Aligned_cols=132 Identities=16% Similarity=0.174 Sum_probs=73.8
Q ss_pred ccEEEEEEcCCCccccccCCccccceeecCCcceEEECceEEEEE-ee---cCCCCccEEEEEEcCCceeeee-cCCCCC
Q 038188 182 HAHVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNANLNGVFYWFV-SR---AGDFHSKLILLFRISDEEFQEI-QRPCIP 256 (384)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~-~~---~~~~~~~~il~fD~~~~~~~~i-~~P~~~ 256 (384)
...+-+|+..++.|+..... |+...+. .++...|..-++. .+ ......-...-|.-...+|... ++|...
T Consensus 195 n~ev~sy~p~~n~W~~~G~~----pf~~~aG-sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~ 269 (381)
T COG3055 195 NKEVLSYDPSTNQWRNLGEN----PFYGNAG-SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPI 269 (381)
T ss_pred cccccccccccchhhhcCcC----cccCccC-cceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCC
Confidence 34677899999999988743 3322222 3444444433333 22 0012234556666678899886 666655
Q ss_pred CCC-ceeE----EEECCeEEEEE-----------------ecC---CCCeEEEEEEcCCceeEEEEeCCCCccccceEEE
Q 038188 257 YTP-FESL----APLNGSIALLH-----------------LDE---SNQYIEIWVMNEMNWIQQFAIGPFLGVKSPCGFW 311 (384)
Q Consensus 257 ~~~-~~~l----~~~~G~L~l~~-----------------~~~---~~~~l~iW~l~~~~W~~~~~i~~~~~~~~~~~~~ 311 (384)
... .... +..+|.+.+.. .+. ...+=+||.+++.+|..+..++ . .+..-+.+.
T Consensus 270 ~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~g~Wk~~GeLp-~-~l~YG~s~~ 347 (381)
T COG3055 270 GSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNGSWKIVGELP-Q-GLAYGVSLS 347 (381)
T ss_pred CCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcCCceeeecccC-C-CccceEEEe
Confidence 211 2222 33444444441 011 1245689999999999988874 2 245555555
Q ss_pred eCCEEEEEE
Q 038188 312 KNNAVLMES 320 (384)
Q Consensus 312 ~~~~il~~~ 320 (384)
-++.|+++.
T Consensus 348 ~nn~vl~IG 356 (381)
T COG3055 348 YNNKVLLIG 356 (381)
T ss_pred cCCcEEEEc
Confidence 566666653
No 90
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=57.57 E-value=1.3e+02 Score=26.34 Aligned_cols=109 Identities=19% Similarity=0.223 Sum_probs=55.4
Q ss_pred ccceEEEee--CCeEEEEccCcccccccCCCCCCCCcccccceeeeEEeeeCCCCCEEEEEEEEEecccccccccccEEE
Q 038188 109 YDGIFCLCD--GGLITLWNPATKECRTLPNYKKNLPALATFLKRNAIFGLCDASGDYKVVFICKLWNEKIQDAYEHAHVA 186 (384)
Q Consensus 109 ~~GLl~~~~--~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 186 (384)
.+|=.|+.. .+.+-+|||..+...+-=.. +.......+..+|.. |+ .. .+. ...+.
T Consensus 27 ~dGnY~ltcGsdrtvrLWNp~rg~liktYsg-------hG~EVlD~~~s~Dns----kf---~s-~Gg-------Dk~v~ 84 (307)
T KOG0316|consen 27 VDGNYCLTCGSDRTVRLWNPLRGALIKTYSG-------HGHEVLDAALSSDNS----KF---AS-CGG-------DKAVQ 84 (307)
T ss_pred cCCCEEEEcCCCceEEeecccccceeeeecC-------CCceeeecccccccc----cc---cc-CCC-------CceEE
Confidence 355566655 35789999998876542110 000122223333321 11 10 111 46678
Q ss_pred EEEcCCC----ccccccCCccccceeecCCcceEEECceEEEEEeecCCCCccEEEEEEcCCceeeeecCC
Q 038188 187 VYTSSTD----SWRVSKGNIKWIPYVFESYYNNANLNGVFYWFVSRAGDFHSKLILLFRISDEEFQEIQRP 253 (384)
Q Consensus 187 vyss~t~----~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~~~~~~i~~P 253 (384)
+++-.|+ .|+.+.. +.--......++|.+.|.+ ...+-++|-.+..+..|+.-
T Consensus 85 vwDV~TGkv~Rr~rgH~a---qVNtV~fNeesSVv~Sgsf-----------D~s~r~wDCRS~s~ePiQil 141 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLA---QVNTVRFNEESSVVASGSF-----------DSSVRLWDCRSRSFEPIQIL 141 (307)
T ss_pred EEEcccCeeeeecccccc---eeeEEEecCcceEEEeccc-----------cceeEEEEcccCCCCccchh
Confidence 8888876 5775532 1111122334577777765 44555666666666665543
No 91
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=56.67 E-value=1.7e+02 Score=27.15 Aligned_cols=116 Identities=14% Similarity=0.155 Sum_probs=64.2
Q ss_pred cEEEEEEcCCC--ccccccCCccccc-----eeecCCcceEEEC-ceEEEEEeecCC--CCccEEEEEEcCCceeeeecC
Q 038188 183 AHVAVYTSSTD--SWRVSKGNIKWIP-----YVFESYYNNANLN-GVFYWFVSRAGD--FHSKLILLFRISDEEFQEIQR 252 (384)
Q Consensus 183 ~~~~vyss~t~--~W~~~~~~~~~~~-----~~~~~~~~~v~~~-G~lywl~~~~~~--~~~~~il~fD~~~~~~~~i~~ 252 (384)
..+.+..|.++ +|.......+... ........++.+. |.+.+-...... .....++..|=..++|+....
T Consensus 112 ~~~~~~~S~D~G~tW~~p~~l~~~~~~~~~~~~~~~~g~gi~l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~~~~~ 191 (351)
T cd00260 112 AYLVLVYSDDDGITWSSPRDLTPSVKGDNWAALFTGPGSGIQMKDGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWKLGEG 191 (351)
T ss_pred eEEEEEEEEcCCceecCCccCCccccCcceeEEEecCcCeEEecCCcEEEEEEEEcCCCCEEEEEEEECCCCCCcEECCC
Confidence 34444445443 8976544322221 1122233466664 888776543211 123445555556789987555
Q ss_pred CCC-CCCCceeEEEE-CCeEEEEEecCCCCeEEEEEEcC--CceeEEEEe
Q 038188 253 PCI-PYTPFESLAPL-NGSIALLHLDESNQYIEIWVMNE--MNWIQQFAI 298 (384)
Q Consensus 253 P~~-~~~~~~~l~~~-~G~L~l~~~~~~~~~l~iW~l~~--~~W~~~~~i 298 (384)
+.. .......++++ +|+|.+...........+..-.+ .+|......
T Consensus 192 ~~~~~~~~e~~i~el~dG~l~~~~R~~~~~~~~~~~S~D~G~tWs~~~~~ 241 (351)
T cd00260 192 VNDAGGCSECSVVELSDGKLYMYTRDNSGGRRPVYESRDMGTTWTEALGT 241 (351)
T ss_pred CCCCCCCcCCEEEEecCCEEEEEEeeCCCCcEEEEEEcCCCcCcccCcCC
Confidence 443 33456678888 89998875443234555555555 889986554
No 92
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=56.19 E-value=55 Score=31.35 Aligned_cols=90 Identities=16% Similarity=0.065 Sum_probs=49.0
Q ss_pred CeEEEEEEcCCceeEEEEeCCCCccccceEEEeCCE-EEEEEe-CCeEEEEECCCCeEEEEeeccC-CCCcceEEEEEEe
Q 038188 280 QYIEIWVMNEMNWIQQFAIGPFLGVKSPCGFWKNNA-VLMESI-NGKLLLYDLVVQEMRDLGRFSS-GELGAAILIYCYK 356 (384)
Q Consensus 280 ~~l~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~-il~~~~-~~~l~~yd~~t~~~~~v~~~~~-~~~~~~~~~~~y~ 356 (384)
+.++|+.++.+.=.++..+.....-..-..+..+|. .++..+ ..-++.||+++.++.++..... +.-.-..+-+...
T Consensus 235 ~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd 314 (514)
T KOG2055|consen 235 GTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHD 314 (514)
T ss_pred CcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCC
Confidence 788888888722123333321110011223444554 555544 4459999999999988876432 2100122234455
Q ss_pred ccceeCCCCCcCC
Q 038188 357 ESLIRLKGEEEDS 369 (384)
Q Consensus 357 ~sL~~~~~~~~~~ 369 (384)
.+++-+.+.+.++
T Consensus 315 ~~fia~~G~~G~I 327 (514)
T KOG2055|consen 315 SNFIAIAGNNGHI 327 (514)
T ss_pred CCeEEEcccCceE
Confidence 6677777777655
No 93
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=54.32 E-value=20 Score=21.29 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=16.7
Q ss_pred eCCEEEEEEeCCeEEEEECCC
Q 038188 312 KNNAVLMESINGKLLLYDLVV 332 (384)
Q Consensus 312 ~~~~il~~~~~~~l~~yd~~t 332 (384)
.++.|++...+++++.+|.+|
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 378888999999999999876
No 94
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=54.21 E-value=2.3e+02 Score=28.05 Aligned_cols=119 Identities=8% Similarity=0.012 Sum_probs=65.6
Q ss_pred CCccEEEEEEcCCceeeeecCCCCCCCCceeEEEECCeEEEEEecCCCCeEEEEEEcCCceeEEEEeCCCCccccceEEE
Q 038188 232 FHSKLILLFRISDEEFQEIQRPCIPYTPFESLAPLNGSIALLHLDESNQYIEIWVMNEMNWIQQFAIGPFLGVKSPCGFW 311 (384)
Q Consensus 232 ~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~l~iW~l~~~~W~~~~~i~~~~~~~~~~~~~ 311 (384)
...+.|+.|++.....+..---.. ........-.+.++.++........++.|..++..=..+...++. ...-+++.
T Consensus 77 t~~g~v~~ys~~~g~it~~~st~~-h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~--~~~sl~is 153 (541)
T KOG4547|consen 77 TPQGSVLLYSVAGGEITAKLSTDK-HYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP--LVSSLCIS 153 (541)
T ss_pred cCCccEEEEEecCCeEEEEEecCC-CCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC--ccceEEEc
Confidence 447888888888776654211110 112223334456666665555557888888877211111111111 23445666
Q ss_pred eCCEEEEEEeCCeEEEEECCCCeEEEEeeccCCCCcceEEEEEEecc
Q 038188 312 KNNAVLMESINGKLLLYDLVVQEMRDLGRFSSGELGAAILIYCYKES 358 (384)
Q Consensus 312 ~~~~il~~~~~~~l~~yd~~t~~~~~v~~~~~~~~~~~~~~~~y~~s 358 (384)
.|+++++.-.+ .+-.||.+++++-. .+.|.. +.-+.+.|+.+
T Consensus 154 ~D~~~l~~as~-~ik~~~~~~kevv~-~ftgh~---s~v~t~~f~~~ 195 (541)
T KOG4547|consen 154 PDGKILLTASR-QIKVLDIETKEVVI-TFTGHG---SPVRTLSFTTL 195 (541)
T ss_pred CCCCEEEeccc-eEEEEEccCceEEE-EecCCC---cceEEEEEEEe
Confidence 78888666543 59999999998633 334444 34445555555
No 95
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=53.36 E-value=27 Score=25.42 Aligned_cols=19 Identities=37% Similarity=0.448 Sum_probs=15.2
Q ss_pred CCeEEEEECCCCeEEEEee
Q 038188 322 NGKLLLYDLVVQEMRDLGR 340 (384)
Q Consensus 322 ~~~l~~yd~~t~~~~~v~~ 340 (384)
.++++.||+.|++.+.+-.
T Consensus 36 ~GRll~ydp~t~~~~vl~~ 54 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLD 54 (89)
T ss_dssp -EEEEEEETTTTEEEEEEE
T ss_pred CcCEEEEECCCCeEEEehh
Confidence 4679999999999877644
No 96
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=51.12 E-value=41 Score=25.40 Aligned_cols=39 Identities=13% Similarity=0.156 Sum_probs=28.6
Q ss_pred CeEEEEccCcc-cccccCCCCCCCCcccccceeeeEEeeeCCCCCEEEEEE
Q 038188 119 GLITLWNPATK-ECRTLPNYKKNLPALATFLKRNAIFGLCDASGDYKVVFI 168 (384)
Q Consensus 119 ~~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~ 168 (384)
-.+++.||.|+ .|... .+. .....+-+|+..+.|+||.+
T Consensus 11 A~V~~yd~~tKk~WvPs--~~~---------~~~V~~y~~~~~ntfRIi~~ 50 (111)
T cd01206 11 AHVFQIDPKTKKNWIPA--SKH---------AVTVSYFYDSTRNVYRIISV 50 (111)
T ss_pred eEEEEECCCCcceeEeC--CCC---------ceeEEEEecCCCcEEEEEEe
Confidence 46789999986 77633 221 24566778999999999986
No 97
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=50.99 E-value=3e+02 Score=28.48 Aligned_cols=79 Identities=10% Similarity=0.041 Sum_probs=49.8
Q ss_pred ceEEECceEEEEEeecCC------CCccEEEEEEcCCceeeeecCCCCC-------CCCceeEEE--E-CCeEEEEEecC
Q 038188 214 NNANLNGVFYWFVSRAGD------FHSKLILLFRISDEEFQEIQRPCIP-------YTPFESLAP--L-NGSIALLHLDE 277 (384)
Q Consensus 214 ~~v~~~G~lywl~~~~~~------~~~~~il~fD~~~~~~~~i~~P~~~-------~~~~~~l~~--~-~G~L~l~~~~~ 277 (384)
..++..++-||+...... .....+++-+.+++.|....+|... ......-+. . ++.|.+-+..-
T Consensus 250 ~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~kl 329 (893)
T KOG0291|consen 250 KIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKL 329 (893)
T ss_pred ceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCcc
Confidence 457778888888743110 2256788999999999999999765 111221122 2 44555555443
Q ss_pred CCCeEEEEEEcCCceeE
Q 038188 278 SNQYIEIWVMNEMNWIQ 294 (384)
Q Consensus 278 ~~~~l~iW~l~~~~W~~ 294 (384)
..+-||.++.++.++
T Consensus 330 --gQLlVweWqsEsYVl 344 (893)
T KOG0291|consen 330 --GQLLVWEWQSESYVL 344 (893)
T ss_pred --ceEEEEEeeccceee
Confidence 789999888754444
No 98
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=49.39 E-value=3.4e+02 Score=28.65 Aligned_cols=111 Identities=12% Similarity=0.146 Sum_probs=61.7
Q ss_pred eEEECceEEEEEeecCCCCccEEEEEEcCCceeeeecCCCCCCCCceeEEEE-CCeEEEEEecCCCCeEEEEEEcCCcee
Q 038188 215 NANLNGVFYWFVSRAGDFHSKLILLFRISDEEFQEIQRPCIPYTPFESLAPL-NGSIALLHLDESNQYIEIWVMNEMNWI 293 (384)
Q Consensus 215 ~v~~~G~lywl~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~l~~~-~G~L~l~~~~~~~~~l~iW~l~~~~W~ 293 (384)
++.+++. |++.. ..++.|.+|...+.+...|-.+.-. ....+++. +|+...+..++ ..+.+=-+++.+=+
T Consensus 61 ~ia~~s~-~f~~~----s~~~tv~~y~fps~~~~~iL~Rftl--p~r~~~v~g~g~~iaagsdD--~~vK~~~~~D~s~~ 131 (933)
T KOG1274|consen 61 SIACYSN-HFLTG----SEQNTVLRYKFPSGEEDTILARFTL--PIRDLAVSGSGKMIAAGSDD--TAVKLLNLDDSSQE 131 (933)
T ss_pred EEeeccc-ceEEe----eccceEEEeeCCCCCccceeeeeec--cceEEEEecCCcEEEeecCc--eeEEEEeccccchh
Confidence 3444444 55554 5588899998888877754332211 11233443 56666666555 66666666663333
Q ss_pred EEEEeCCCCccccceEEEeCCEE-EEEEeCCeEEEEECCCCeEE
Q 038188 294 QQFAIGPFLGVKSPCGFWKNNAV-LMESINGKLLLYDLVVQEMR 336 (384)
Q Consensus 294 ~~~~i~~~~~~~~~~~~~~~~~i-l~~~~~~~l~~yd~~t~~~~ 336 (384)
++.+ ++..-..-+.+..++.+ .+...+|.+.+||++++++.
T Consensus 132 ~~lr--gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~ 173 (933)
T KOG1274|consen 132 KVLR--GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILS 173 (933)
T ss_pred eeec--ccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhh
Confidence 3222 22211112334445555 44566888999999987653
No 99
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=49.00 E-value=1.9e+02 Score=25.56 Aligned_cols=60 Identities=18% Similarity=0.283 Sum_probs=38.7
Q ss_pred CeEEEEEEcC--------CceeEEEEeCCC-CccccceEEE---eCCEEEEEEeCCeEEEEECCCCeEEEEe
Q 038188 280 QYIEIWVMNE--------MNWIQQFAIGPF-LGVKSPCGFW---KNNAVLMESINGKLLLYDLVVQEMRDLG 339 (384)
Q Consensus 280 ~~l~iW~l~~--------~~W~~~~~i~~~-~~~~~~~~~~---~~~~il~~~~~~~l~~yd~~t~~~~~v~ 339 (384)
..+.-|...+ ..|+.+.-.... ..+...-+++ +.+.|++..+++.++..|++++++++..
T Consensus 81 G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 81 GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEE
Confidence 6778888766 457764322110 0122333333 3577888888889999999999998753
No 100
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=46.96 E-value=1.8e+02 Score=28.68 Aligned_cols=105 Identities=6% Similarity=0.116 Sum_probs=64.1
Q ss_pred ccEEEEEEcCCCccccccCC-ccccceeecCCcceEEECceEEEEEee------cCC--------CCccEEEEEEcCCce
Q 038188 182 HAHVAVYTSSTDSWRVSKGN-IKWIPYVFESYYNNANLNGVFYWFVSR------AGD--------FHSKLILLFRISDEE 246 (384)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~-~~~~~~~~~~~~~~v~~~G~lywl~~~------~~~--------~~~~~il~fD~~~~~ 246 (384)
--.....+++|-.|...+.. ..++|... .+++..+.++|.+.+= ... .-...+-++|+++.+
T Consensus 229 LgDLW~Ldl~Tl~W~kp~~~G~~PlPRSL---Hsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~ 305 (830)
T KOG4152|consen 229 LGDLWTLDLDTLTWNKPSLSGVAPLPRSL---HSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMA 305 (830)
T ss_pred ccceeEEecceeecccccccCCCCCCccc---ccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchh
Confidence 45677889999999986532 12333322 3567888888876541 100 115678899999999
Q ss_pred eeeecCCCCC-----CCC-ceeEEEECCeEEEEEecC--------CCCeEEEEEEcC
Q 038188 247 FQEIQRPCIP-----YTP-FESLAPLNGSIALLHLDE--------SNQYIEIWVMNE 289 (384)
Q Consensus 247 ~~~i~~P~~~-----~~~-~~~l~~~~G~L~l~~~~~--------~~~~l~iW~l~~ 289 (384)
|..+-+-... ... .-+.+..+.+||+....+ +.-+-++|.|+.
T Consensus 306 W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdT 362 (830)
T KOG4152|consen 306 WETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDT 362 (830)
T ss_pred eeeeeeccccccccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcc
Confidence 9876432211 111 223455688999985432 223457888875
No 101
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=45.65 E-value=3.1e+02 Score=27.01 Aligned_cols=31 Identities=10% Similarity=0.162 Sum_probs=23.6
Q ss_pred cceEEECceEEEEEeecCCCCccEEEEEEcCC--ceeee
Q 038188 213 YNNANLNGVFYWFVSRAGDFHSKLILLFRISD--EEFQE 249 (384)
Q Consensus 213 ~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~--~~~~~ 249 (384)
..++..+|.+|.... ...+.++|..+ ..|+.
T Consensus 55 ~sPvv~~g~vy~~~~------~g~l~AlD~~tG~~~W~~ 87 (488)
T cd00216 55 GTPLVVDGDMYFTTS------HSALFALDAATGKVLWRY 87 (488)
T ss_pred cCCEEECCEEEEeCC------CCcEEEEECCCChhhcee
Confidence 357899999998753 57899999865 45664
No 102
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=45.40 E-value=1.9e+02 Score=30.05 Aligned_cols=97 Identities=16% Similarity=0.251 Sum_probs=57.1
Q ss_pred ccEEEEEEcCCceee---eecCCCCCCCCceeEEEECCe-EEEEEecCCCCeEEEEEEcC--------CceeEEEEeCCC
Q 038188 234 SKLILLFRISDEEFQ---EIQRPCIPYTPFESLAPLNGS-IALLHLDESNQYIEIWVMNE--------MNWIQQFAIGPF 301 (384)
Q Consensus 234 ~~~il~fD~~~~~~~---~i~~P~~~~~~~~~l~~~~G~-L~l~~~~~~~~~l~iW~l~~--------~~W~~~~~i~~~ 301 (384)
.-....||..+..|. .|..|-........+...--+ -|+.... ...+.||.+.+ ..|..+. |...
T Consensus 431 ~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~--dg~~KiW~~~~~~n~~k~~s~W~c~~-i~sy 507 (792)
T KOG1963|consen 431 SLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASV--DGDFKIWVFTDDSNIYKKSSNWTCKA-IGSY 507 (792)
T ss_pred EEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEecc--CCeEEEEEEecccccCcCccceEEee-eecc
Confidence 345577888888884 367775441111111111112 2222223 38999999954 6799854 3322
Q ss_pred C-ccccceEEEeCCEEEEEEeCCeEEEEECCCC
Q 038188 302 L-GVKSPCGFWKNNAVLMESINGKLLLYDLVVQ 333 (384)
Q Consensus 302 ~-~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~ 333 (384)
. .-....++.++|.++...-++.+-.||..++
T Consensus 508 ~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 508 HKTPITALCFSQDGSLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred ccCcccchhhcCCCcEEEEecCCEEEEecCCCh
Confidence 1 0122344556889988888888999999993
No 103
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=43.94 E-value=3.1e+02 Score=26.56 Aligned_cols=142 Identities=11% Similarity=0.110 Sum_probs=73.3
Q ss_pred cEEEEEEcCCCccccccCCccccceeecCCcceEEECce-EEEEEeecCCCCccEEEEEEcCCceeeeecCCCCCCCCce
Q 038188 183 AHVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNANLNGV-FYWFVSRAGDFHSKLILLFRISDEEFQEIQRPCIPYTPFE 261 (384)
Q Consensus 183 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~ 261 (384)
..+.+|-.....=..++.+ .+.. .+-.....+-+|. .-+.. .....+.+||+.+.+.+.+..|........
T Consensus 235 ~~lrifqvDGk~N~~lqS~--~l~~-fPi~~a~f~p~G~~~i~~s-----~rrky~ysyDle~ak~~k~~~~~g~e~~~~ 306 (514)
T KOG2055|consen 235 GTLRIFQVDGKVNPKLQSI--HLEK-FPIQKAEFAPNGHSVIFTS-----GRRKYLYSYDLETAKVTKLKPPYGVEEKSM 306 (514)
T ss_pred CcEEEEEecCccChhheee--eecc-CccceeeecCCCceEEEec-----ccceEEEEeeccccccccccCCCCcccchh
Confidence 4556666554433344332 1110 1111234445676 44443 347889999999999999988865521111
Q ss_pred eEE-EE-CCeEEEEEecCCCCeEEEEEEcCCceeEEEEeCCCCccccceEEEeCCEE-EEEEeCCeEEEEECCCCeEEE
Q 038188 262 SLA-PL-NGSIALLHLDESNQYIEIWVMNEMNWIQQFAIGPFLGVKSPCGFWKNNAV-LMESINGKLLLYDLVVQEMRD 337 (384)
Q Consensus 262 ~l~-~~-~G~L~l~~~~~~~~~l~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i-l~~~~~~~l~~yd~~t~~~~~ 337 (384)
... +. .+...++.... ..+.+--.+...|.--..|. +....+.+..+++. +...+.+.++++|++++....
T Consensus 307 e~FeVShd~~fia~~G~~--G~I~lLhakT~eli~s~Kie---G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~ 380 (514)
T KOG2055|consen 307 ERFEVSHDSNFIAIAGNN--GHIHLLHAKTKELITSFKIE---GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLH 380 (514)
T ss_pred heeEecCCCCeEEEcccC--ceEEeehhhhhhhhheeeec---cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEE
Confidence 111 11 23322222111 33333222224555544442 23444556566654 555667899999999986543
No 104
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=43.54 E-value=3.1e+02 Score=26.40 Aligned_cols=125 Identities=10% Similarity=0.164 Sum_probs=70.5
Q ss_pred ccEEEEEEcCCCccccccCCccccceeecCCcceEEECceEEEEEeecCCCCccEEEEEEcC-CceeeeecCCCCCCCCc
Q 038188 182 HAHVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNANLNGVFYWFVSRAGDFHSKLILLFRIS-DEEFQEIQRPCIPYTPF 260 (384)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~-~~~~~~i~~P~~~~~~~ 260 (384)
...+.||+..+.. .+. .+|... ..-..+.+...=||+... .....|..+|+. .+.|..++++... +..
T Consensus 368 d~~vkiwdlks~~--~~a----~Fpght-~~vk~i~FsENGY~Lat~---add~~V~lwDLRKl~n~kt~~l~~~~-~v~ 436 (506)
T KOG0289|consen 368 DGVVKIWDLKSQT--NVA----KFPGHT-GPVKAISFSENGYWLATA---ADDGSVKLWDLRKLKNFKTIQLDEKK-EVN 436 (506)
T ss_pred CceEEEEEcCCcc--ccc----cCCCCC-CceeEEEeccCceEEEEE---ecCCeEEEEEehhhcccceeeccccc-cce
Confidence 5567777777665 222 223211 112466777777998863 335569999995 4567778888643 111
Q ss_pred eeEEEECCeEEEEEecCCCCeEEEEEEcC--CceeEEEEeCCCCccccceEEEeCCEEEEEEe
Q 038188 261 ESLAPLNGSIALLHLDESNQYIEIWVMNE--MNWIQQFAIGPFLGVKSPCGFWKNNAVLMESI 321 (384)
Q Consensus 261 ~~l~~~~G~L~l~~~~~~~~~l~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~ 321 (384)
..-.-.-|+...+. +..+.|+..+. .+|.+.....-..+....+.+.+..+++....
T Consensus 437 s~~fD~SGt~L~~~----g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~s 495 (506)
T KOG0289|consen 437 SLSFDQSGTYLGIA----GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTS 495 (506)
T ss_pred eEEEcCCCCeEEee----cceeEEEEEecccccceeeehhhhcccccceeeecccceEEeecc
Confidence 11111233332222 26778888776 78999776543333344455655666665544
No 105
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=41.77 E-value=2.5e+02 Score=24.92 Aligned_cols=109 Identities=13% Similarity=0.061 Sum_probs=65.1
Q ss_pred CCccEEEEEEcCCceeeeecCCCCCCCCceeEEE-ECCeEEEEEecCCCCeEEEEEEcC----CceeEEEEeCCCCcccc
Q 038188 232 FHSKLILLFRISDEEFQEIQRPCIPYTPFESLAP-LNGSIALLHLDESNQYIEIWVMNE----MNWIQQFAIGPFLGVKS 306 (384)
Q Consensus 232 ~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~l~~-~~G~L~l~~~~~~~~~l~iW~l~~----~~W~~~~~i~~~~~~~~ 306 (384)
...+.|-+.|+.+..+..-..|++. ..-..|.+ .+|+........ +..-+|.|-. ..=+.+.+++......-
T Consensus 143 dqsg~irvWDl~~~~c~~~liPe~~-~~i~sl~v~~dgsml~a~nnk--G~cyvW~l~~~~~~s~l~P~~k~~ah~~~il 219 (311)
T KOG0315|consen 143 DQSGNIRVWDLGENSCTHELIPEDD-TSIQSLTVMPDGSMLAAANNK--GNCYVWRLLNHQTASELEPVHKFQAHNGHIL 219 (311)
T ss_pred cCCCcEEEEEccCCccccccCCCCC-cceeeEEEcCCCcEEEEecCC--ccEEEEEccCCCccccceEhhheecccceEE
Confidence 5588999999999999998888865 33334444 477755554444 6788999865 22222333322221111
Q ss_pred ceEEEeCCEEEEE-EeCCeEEEEECCCCeEEEEeeccC
Q 038188 307 PCGFWKNNAVLME-SINGKLLLYDLVVQEMRDLGRFSS 343 (384)
Q Consensus 307 ~~~~~~~~~il~~-~~~~~l~~yd~~t~~~~~v~~~~~ 343 (384)
-+.+.++++.+.. +.+..+.+|+.++--.-+..+.|.
T Consensus 220 ~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh 257 (311)
T KOG0315|consen 220 RCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH 257 (311)
T ss_pred EEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecC
Confidence 1223457776665 445668999999982223344443
No 106
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=41.27 E-value=3.1e+02 Score=25.78 Aligned_cols=116 Identities=12% Similarity=0.047 Sum_probs=68.5
Q ss_pred EEECceEEEEEeecCCCCccEEEEEEcCCc------eeeeecCCC---CCCCCcee-EEEE--CCeEEEEEe-cC----C
Q 038188 216 ANLNGVFYWFVSRAGDFHSKLILLFRISDE------EFQEIQRPC---IPYTPFES-LAPL--NGSIALLHL-DE----S 278 (384)
Q Consensus 216 v~~~G~lywl~~~~~~~~~~~il~fD~~~~------~~~~i~~P~---~~~~~~~~-l~~~--~G~L~l~~~-~~----~ 278 (384)
...+|..+|.+. .+.|..+|+++. .|..+..-. ...-...+ ++.- +++|+++.. .. .
T Consensus 202 ~~~dg~~~~vs~------eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk 275 (352)
T TIGR02658 202 SNKSGRLVWPTY------TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHK 275 (352)
T ss_pred EcCCCcEEEEec------CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCcccccc
Confidence 334799999986 488999997543 233332211 11111212 3333 456777421 11 1
Q ss_pred CCeEEEEEEcCCceeEEEEeCCCCccccceEEEeCCE-EEEEEe--CCeEEEEECCCCe-EEEE
Q 038188 279 NQYIEIWVMNEMNWIQQFAIGPFLGVKSPCGFWKNNA-VLMESI--NGKLLLYDLVVQE-MRDL 338 (384)
Q Consensus 279 ~~~l~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~-il~~~~--~~~l~~yd~~t~~-~~~v 338 (384)
...=+||+++-.++..+.+|.... -...+.+..+++ .++... .+.+.++|..+.+ ++.+
T Consensus 276 ~~~~~V~ViD~~t~kvi~~i~vG~-~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 276 TASRFLFVVDAKTGKRLRKIELGH-EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCCEEEEEECCCCeEEEEEeCCC-ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 123389999888899988886433 334566777777 555433 4569999999985 4555
No 107
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=40.73 E-value=21 Score=26.32 Aligned_cols=25 Identities=24% Similarity=0.402 Sum_probs=22.6
Q ss_pred cccCCCCHHHHHHHHccCChhhhhh
Q 038188 9 ASSMLMPEDVRLEILSRLPVKSLMR 33 (384)
Q Consensus 9 ~~~~~LP~dll~eIl~rLp~~~l~r 33 (384)
..|..||.|+-..||..|+-++|..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 5689999999999999999988864
No 108
>PLN00181 protein SPA1-RELATED; Provisional
Probab=40.05 E-value=4.7e+02 Score=27.57 Aligned_cols=100 Identities=8% Similarity=0.114 Sum_probs=54.0
Q ss_pred CCccEEEEEEcCCceeeeecCCCCCCCCceeEEEECCeEEEEEecCCCCeEEEEEEcC----CceeEEEEeCCCCccccc
Q 038188 232 FHSKLILLFRISDEEFQEIQRPCIPYTPFESLAPLNGSIALLHLDESNQYIEIWVMNE----MNWIQQFAIGPFLGVKSP 307 (384)
Q Consensus 232 ~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~l~iW~l~~----~~W~~~~~i~~~~~~~~~ 307 (384)
...+.|..+|+.+..-....+... ...-..+...++...+....+ ..+.||-+.. ..|..+..+..+......
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~~~h-~~~V~~v~f~~~~~lvs~s~D--~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~ 713 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTMIGH-SKTVSYVRFVDSSTLVSSSTD--NTLKLWDLSMSISGINETPLHSFMGHTNVKNF 713 (793)
T ss_pred eCCCeEEEEECCCCCccceEecCC-CCCEEEEEEeCCCEEEEEECC--CEEEEEeCCCCccccCCcceEEEcCCCCCeeE
Confidence 346788889986543111111111 111123333466655555544 7899999864 246666665443322233
Q ss_pred eEEEeCCEEEE-EEeCCeEEEEECCCCe
Q 038188 308 CGFWKNNAVLM-ESINGKLLLYDLVVQE 334 (384)
Q Consensus 308 ~~~~~~~~il~-~~~~~~l~~yd~~t~~ 334 (384)
+++..++.++. ...++.+.+|+..+..
T Consensus 714 v~~s~~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 714 VGLSVSDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred EEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence 44554555444 4567889999987653
No 109
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=39.49 E-value=1.1e+02 Score=27.39 Aligned_cols=65 Identities=18% Similarity=0.294 Sum_probs=44.1
Q ss_pred EECCeEEEEEecCCCCeEEEEEEcC-CceeEEEEeCCCCccccceEEEeCCEEEEEEeCCeEEEEECCCCeE
Q 038188 265 PLNGSIALLHLDESNQYIEIWVMNE-MNWIQQFAIGPFLGVKSPCGFWKNNAVLMESINGKLLLYDLVVQEM 335 (384)
Q Consensus 265 ~~~G~L~l~~~~~~~~~l~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~~ 335 (384)
..+|.||.....+ ..+.+|-|++ +. .+.++-.. ...-++|.++.-.+..-....+-+||++++..
T Consensus 201 SpDGslcasGgkd--g~~~LwdL~~~k~---lysl~a~~-~v~sl~fspnrywL~~at~~sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 201 SPDGSLCASGGKD--GEAMLWDLNEGKN---LYSLEAFD-IVNSLCFSPNRYWLCAATATSIKIWDLESKAV 266 (315)
T ss_pred CCCCCEEecCCCC--ceEEEEEccCCce---eEeccCCC-eEeeEEecCCceeEeeccCCceEEEeccchhh
Confidence 3489998865444 8999999998 32 45554333 34556677676666555555699999999863
No 110
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=38.28 E-value=5.8e+02 Score=28.12 Aligned_cols=65 Identities=14% Similarity=0.119 Sum_probs=40.0
Q ss_pred ECceEEEEEeecCCCCccEEEEEEcCCceeeeecCCC---CC--------CCCceeEEE-ECCeEEEEEecCCCCeEEEE
Q 038188 218 LNGVFYWFVSRAGDFHSKLILLFRISDEEFQEIQRPC---IP--------YTPFESLAP-LNGSIALLHLDESNQYIEIW 285 (384)
Q Consensus 218 ~~G~lywl~~~~~~~~~~~il~fD~~~~~~~~i~~P~---~~--------~~~~~~l~~-~~G~L~l~~~~~~~~~l~iW 285 (384)
-+|.+|... ...+.|..||+++.....+.--. .. ......++. .+|+|+++.... .++++|
T Consensus 813 ~dG~LYVAD-----s~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N--n~Irvi 885 (1057)
T PLN02919 813 KDGQIYVAD-----SYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN--SLIRYL 885 (1057)
T ss_pred CCCcEEEEE-----CCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC--CEEEEE
Confidence 468876654 45889999999887766542110 00 011223343 378888776554 788888
Q ss_pred EEcC
Q 038188 286 VMNE 289 (384)
Q Consensus 286 ~l~~ 289 (384)
-++.
T Consensus 886 d~~~ 889 (1057)
T PLN02919 886 DLNK 889 (1057)
T ss_pred ECCC
Confidence 8765
No 111
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=37.98 E-value=2.8e+02 Score=24.28 Aligned_cols=114 Identities=10% Similarity=0.121 Sum_probs=60.0
Q ss_pred CceEEEEEeecCCCCccEEEEEEcCCcee-eeecC--CCCC-C-CCceeEEE-ECCeEEEEEecCCCCeEEEEEEcCCce
Q 038188 219 NGVFYWFVSRAGDFHSKLILLFRISDEEF-QEIQR--PCIP-Y-TPFESLAP-LNGSIALLHLDESNQYIEIWVMNEMNW 292 (384)
Q Consensus 219 ~G~lywl~~~~~~~~~~~il~fD~~~~~~-~~i~~--P~~~-~-~~~~~l~~-~~G~L~l~~~~~~~~~l~iW~l~~~~W 292 (384)
+|...++.. ...+.|..+|+.+.+. ..+.. |... . .....+.. -+|+..++.... ..++.+|-++ +|
T Consensus 167 dg~~l~~~~----~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~-~~~i~v~d~~--~~ 239 (300)
T TIGR03866 167 DGKELWVSS----EIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP-ANRVAVVDAK--TY 239 (300)
T ss_pred CCCEEEEEc----CCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC-CCeEEEEECC--CC
Confidence 565444442 2356788899987654 33332 1111 0 11112332 356543333322 2568888654 45
Q ss_pred eEEEEeCCCCccccceEEEeCCEEEEEE--eCCeEEEEECCCCeE-EEEee
Q 038188 293 IQQFAIGPFLGVKSPCGFWKNNAVLMES--INGKLLLYDLVVQEM-RDLGR 340 (384)
Q Consensus 293 ~~~~~i~~~~~~~~~~~~~~~~~il~~~--~~~~l~~yd~~t~~~-~~v~~ 340 (384)
.....+.... ....+.+.+++..++.. .++.+.+||+++++. +.+..
T Consensus 240 ~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 240 EVLDYLLVGQ-RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV 289 (300)
T ss_pred cEEEEEEeCC-CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence 5554432211 22345566666655543 367899999999884 66654
No 112
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=37.93 E-value=3e+02 Score=24.66 Aligned_cols=111 Identities=12% Similarity=0.037 Sum_probs=65.4
Q ss_pred ECceEEEEEeecCCCCccEEEEEEcCCceee-eecCCCCCCCCceeEEEECCeEEEEEecCCCCeEEEEEEcCCceeEEE
Q 038188 218 LNGVFYWFVSRAGDFHSKLILLFRISDEEFQ-EIQRPCIPYTPFESLAPLNGSIALLHLDESNQYIEIWVMNEMNWIQQF 296 (384)
Q Consensus 218 ~~G~lywl~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~l~iW~l~~~~W~~~~ 296 (384)
-+|.+|=-++. .....|-.+|+.+++.. ..++|... ..-.+...+++|+.++... ...=+|-.+ ...++.
T Consensus 54 ~~g~LyESTG~---yG~S~l~~~d~~tg~~~~~~~l~~~~--FgEGit~~~d~l~qLTWk~--~~~f~yd~~--tl~~~~ 124 (264)
T PF05096_consen 54 DDGTLYESTGL---YGQSSLRKVDLETGKVLQSVPLPPRY--FGEGITILGDKLYQLTWKE--GTGFVYDPN--TLKKIG 124 (264)
T ss_dssp ETTEEEEEECS---TTEEEEEEEETTTSSEEEEEE-TTT----EEEEEEETTEEEEEESSS--SEEEEEETT--TTEEEE
T ss_pred CCCEEEEeCCC---CCcEEEEEEECCCCcEEEEEECCccc--cceeEEEECCEEEEEEecC--CeEEEEccc--cceEEE
Confidence 46777765542 34678899999998774 67998754 3446777899999998765 444444333 445555
Q ss_pred EeCCCCccccceEEEeCCEEEEEEeCCeEEEEECCCCe-EEEEe
Q 038188 297 AIGPFLGVKSPCGFWKNNAVLMESINGKLLLYDLVVQE-MRDLG 339 (384)
Q Consensus 297 ~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~t~~-~~~v~ 339 (384)
++.- +.-.--++ ..+..+++..+..++...|+++-+ .+.+.
T Consensus 125 ~~~y-~~EGWGLt-~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 125 TFPY-PGEGWGLT-SDGKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp EEE--SSS--EEE-ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred EEec-CCcceEEE-cCCCEEEEECCccceEEECCcccceEEEEE
Confidence 5431 11112222 225567778888889999998853 34443
No 113
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=34.52 E-value=1.4e+02 Score=20.03 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=13.5
Q ss_pred eEEEEECCCCeEEEEe
Q 038188 324 KLLLYDLVVQEMRDLG 339 (384)
Q Consensus 324 ~l~~yd~~t~~~~~v~ 339 (384)
+++.||.+|++++-+.
T Consensus 42 KIfkyd~~tNei~L~K 57 (63)
T PF14157_consen 42 KIFKYDEDTNEITLKK 57 (63)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCCeEEEEE
Confidence 7999999999987653
No 114
>PF15408 PH_7: Pleckstrin homology domain
Probab=34.12 E-value=22 Score=25.37 Aligned_cols=25 Identities=28% Similarity=0.709 Sum_probs=20.4
Q ss_pred hhhhhhhhcccHhhHhhcCChHhHH
Q 038188 28 VKSLMRLRCVCKSWYALIENPKFIS 52 (384)
Q Consensus 28 ~~~l~r~r~VcK~W~~li~~p~F~~ 52 (384)
.+-.+..+-|||.|-....+|.|.-
T Consensus 76 ~~~FA~S~~~~~~Wi~~mN~~s~~~ 100 (104)
T PF15408_consen 76 VQCFASSKKVCQSWIQVMNSPSFRV 100 (104)
T ss_pred hhhhhhHHHHHHHHHHHhcChhhhh
Confidence 3556677889999999999999853
No 115
>PLN02772 guanylate kinase
Probab=33.21 E-value=2.9e+02 Score=26.43 Aligned_cols=75 Identities=12% Similarity=0.253 Sum_probs=50.0
Q ss_pred eeEEEECCeEEEEEec-CCC-CeEEEEEEcC--CceeEEEEeC--CCCccccceEEEeCCEEEEEEe----CCeEEEEEC
Q 038188 261 ESLAPLNGSIALLHLD-ESN-QYIEIWVMNE--MNWIQQFAIG--PFLGVKSPCGFWKNNAVLMESI----NGKLLLYDL 330 (384)
Q Consensus 261 ~~l~~~~G~L~l~~~~-~~~-~~l~iW~l~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~il~~~~----~~~l~~yd~ 330 (384)
...+..++++|++... +.. .+..+|.++. ..|..--..+ |.++..+-..+.++++|++... +.++....+
T Consensus 28 ~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~~~~w~l~~ 107 (398)
T PLN02772 28 ETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPDDSIWFLEV 107 (398)
T ss_pred ceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCccceEEEEc
Confidence 4567789999999643 322 5789999998 7899854433 4444556666677788877642 345777777
Q ss_pred CCCeE
Q 038188 331 VVQEM 335 (384)
Q Consensus 331 ~t~~~ 335 (384)
.|.-+
T Consensus 108 ~t~~~ 112 (398)
T PLN02772 108 DTPFV 112 (398)
T ss_pred CCHHH
Confidence 77433
No 116
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=31.86 E-value=4e+02 Score=24.27 Aligned_cols=115 Identities=10% Similarity=0.087 Sum_probs=61.8
Q ss_pred CceEEEEEeecCCCCccEEEEEEcC--Cceeee---e-cCCCCCCCCce--eEEE-ECCe-EEEEEecCCCCeEEEEEEc
Q 038188 219 NGVFYWFVSRAGDFHSKLILLFRIS--DEEFQE---I-QRPCIPYTPFE--SLAP-LNGS-IALLHLDESNQYIEIWVMN 288 (384)
Q Consensus 219 ~G~lywl~~~~~~~~~~~il~fD~~--~~~~~~---i-~~P~~~~~~~~--~l~~-~~G~-L~l~~~~~~~~~l~iW~l~ 288 (384)
+|...+... ...+.|..||+. +.++.. + ..|........ .+.. -+|+ |++.. .....+.+|.++
T Consensus 185 dg~~lyv~~----~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~--~~~~~I~v~~i~ 258 (330)
T PRK11028 185 NQQYAYCVN----ELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACD--RTASLISVFSVS 258 (330)
T ss_pred CCCEEEEEe----cCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEec--CCCCeEEEEEEe
Confidence 556555553 347888888886 334433 3 23433211111 2222 2555 55542 234789999986
Q ss_pred C--CceeEEEEeCCCCccccceEEEeCCEEEEE-Ee-CCeEEEEE--CCCCeEEEEee
Q 038188 289 E--MNWIQQFAIGPFLGVKSPCGFWKNNAVLME-SI-NGKLLLYD--LVVQEMRDLGR 340 (384)
Q Consensus 289 ~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~-~~-~~~l~~yd--~~t~~~~~v~~ 340 (384)
. ..+..+..+.... ..+.+.+.++++.++. .. ++.+.+|+ .+++.++.+..
T Consensus 259 ~~~~~~~~~~~~~~~~-~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~ 315 (330)
T PRK11028 259 EDGSVLSFEGHQPTET-QPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGR 315 (330)
T ss_pred CCCCeEEEeEEEeccc-cCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEccc
Confidence 5 4566666554321 2344566667765554 32 45577764 46777776654
No 117
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=31.56 E-value=4.7e+02 Score=25.06 Aligned_cols=113 Identities=15% Similarity=0.135 Sum_probs=61.3
Q ss_pred ccEEEEEEcCCceee-eecCCCCCCCCceeEEEECCeEEEEEecCCCCeEEEEEEcCCceeEEEEeCCCC-c-cccceEE
Q 038188 234 SKLILLFRISDEEFQ-EIQRPCIPYTPFESLAPLNGSIALLHLDESNQYIEIWVMNEMNWIQQFAIGPFL-G-VKSPCGF 310 (384)
Q Consensus 234 ~~~il~fD~~~~~~~-~i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~l~iW~l~~~~W~~~~~i~~~~-~-~~~~~~~ 310 (384)
...|-.|+.++..-+ .|..-.. -...-..-+|++.++.... .++.+|-+++ |..+.+..... . +.---++
T Consensus 375 d~~i~l~~~e~~~dr~lise~~~---its~~iS~d~k~~LvnL~~--qei~LWDl~e--~~lv~kY~Ghkq~~fiIrSCF 447 (519)
T KOG0293|consen 375 DKKIRLYNREARVDRGLISEEQP---ITSFSISKDGKLALVNLQD--QEIHLWDLEE--NKLVRKYFGHKQGHFIIRSCF 447 (519)
T ss_pred ccceeeechhhhhhhccccccCc---eeEEEEcCCCcEEEEEccc--CeeEEeecch--hhHHHHhhcccccceEEEecc
Confidence 556666776665544 3333211 1122234478899987766 8999999985 44433221111 0 1011122
Q ss_pred Ee-CCEEEEE-EeCCeEEEEECCCCeEEEEeeccCCCCcceEEEEEEec
Q 038188 311 WK-NNAVLME-SINGKLLLYDLVVQEMRDLGRFSSGELGAAILIYCYKE 357 (384)
Q Consensus 311 ~~-~~~il~~-~~~~~l~~yd~~t~~~~~v~~~~~~~~~~~~~~~~y~~ 357 (384)
+. ++.++.. +++.++++|+.++++.-.+- .|.. ...+++.|-|
T Consensus 448 gg~~~~fiaSGSED~kvyIWhr~sgkll~~L-sGHs---~~vNcVswNP 492 (519)
T KOG0293|consen 448 GGGNDKFIASGSEDSKVYIWHRISGKLLAVL-SGHS---KTVNCVSWNP 492 (519)
T ss_pred CCCCcceEEecCCCceEEEEEccCCceeEee-cCCc---ceeeEEecCC
Confidence 22 3344444 66889999999998864432 2433 3445566654
No 118
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=29.73 E-value=3.4e+02 Score=24.82 Aligned_cols=61 Identities=13% Similarity=0.318 Sum_probs=38.4
Q ss_pred CeEEEEEEcC-CceeEEEEeCCCCccccc-eEE-E-e-CCEEEEEEeCCeEEEEECCCCeEEEEeeccCC
Q 038188 280 QYIEIWVMNE-MNWIQQFAIGPFLGVKSP-CGF-W-K-NNAVLMESINGKLLLYDLVVQEMRDLGRFSSG 344 (384)
Q Consensus 280 ~~l~iW~l~~-~~W~~~~~i~~~~~~~~~-~~~-~-~-~~~il~~~~~~~l~~yd~~t~~~~~v~~~~~~ 344 (384)
..+++|.+++ +.=+-+- ......| +.+ | + +.+++....++.+-.||+.+++...|..+..+
T Consensus 50 ~tVR~wevq~~g~~~~ka----~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~p 115 (347)
T KOG0647|consen 50 GTVRIWEVQNSGQLVPKA----QQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAP 115 (347)
T ss_pred CceEEEEEecCCcccchh----hhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccc
Confidence 6899999986 2111100 0112223 333 2 2 44666667788899999999999999887544
No 119
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=29.19 E-value=4.1e+02 Score=23.58 Aligned_cols=94 Identities=18% Similarity=0.188 Sum_probs=52.6
Q ss_pred ccEEEEEEcCCceeeee-cCCCCCCCCceeEEEE---CCeEEEEEecCCCCeEEEEEEcCCceeEEEEeCCCC--cccc-
Q 038188 234 SKLILLFRISDEEFQEI-QRPCIPYTPFESLAPL---NGSIALLHLDESNQYIEIWVMNEMNWIQQFAIGPFL--GVKS- 306 (384)
Q Consensus 234 ~~~il~fD~~~~~~~~i-~~P~~~~~~~~~l~~~---~G~L~l~~~~~~~~~l~iW~l~~~~W~~~~~i~~~~--~~~~- 306 (384)
...|...|+++.+++.. .-. ....+-++. ++.+ -...+...++||-++...= +..|.+.. ...+
T Consensus 135 D~~~y~~dlE~G~i~r~~rGH----tDYvH~vv~R~~~~qi---lsG~EDGtvRvWd~kt~k~--v~~ie~yk~~~~lRp 205 (325)
T KOG0649|consen 135 DGVIYQVDLEDGRIQREYRGH----TDYVHSVVGRNANGQI---LSGAEDGTVRVWDTKTQKH--VSMIEPYKNPNLLRP 205 (325)
T ss_pred CeEEEEEEecCCEEEEEEcCC----cceeeeeeecccCcce---eecCCCccEEEEeccccce--eEEeccccChhhcCc
Confidence 77888999999999764 332 222233332 3332 1233448999999886211 22233221 1111
Q ss_pred -----ceEEEeCCEEEEEEeCCeEEEEECCCCeEE
Q 038188 307 -----PCGFWKNNAVLMESINGKLLLYDLVVQEMR 336 (384)
Q Consensus 307 -----~~~~~~~~~il~~~~~~~l~~yd~~t~~~~ 336 (384)
..++..+..-+++.+..++-.|++...+-.
T Consensus 206 ~~g~wigala~~edWlvCGgGp~lslwhLrsse~t 240 (325)
T KOG0649|consen 206 DWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSEST 240 (325)
T ss_pred ccCceeEEEeccCceEEecCCCceeEEeccCCCce
Confidence 233334555667777677889999887643
No 120
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=28.99 E-value=1.8e+02 Score=26.40 Aligned_cols=109 Identities=9% Similarity=0.137 Sum_probs=61.8
Q ss_pred ccEEEEEEcCCCccccccCCccccce-eecCCcceEEECceEEEEEeecCCCCccEEEEEEcCCceeeeecC-C-CCCCC
Q 038188 182 HAHVAVYTSSTDSWRVSKGNIKWIPY-VFESYYNNANLNGVFYWFVSRAGDFHSKLILLFRISDEEFQEIQR-P-CIPYT 258 (384)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~-~~~~~~~~v~~~G~lywl~~~~~~~~~~~il~fD~~~~~~~~i~~-P-~~~~~ 258 (384)
...+.+|+..+.+|.........--. .......-+++.|.+-.-. .....+..||+++.+|..+.- . ....+
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~-----~~~~~la~yd~~~~~w~~~~~~~s~~ipg 89 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNG-----TNSSNLATYDFKNQTWSSLGGGSSNSIPG 89 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECC-----CCceeEEEEecCCCeeeecCCcccccCCC
Confidence 67899999999999987653211111 1111245677777665432 247889999999999987654 2 11111
Q ss_pred CceeEEE--EC-CeEEEEEe-cCCCCeEEEEEEcCCceeEEEE
Q 038188 259 PFESLAP--LN-GSIALLHL-DESNQYIEIWVMNEMNWIQQFA 297 (384)
Q Consensus 259 ~~~~l~~--~~-G~L~l~~~-~~~~~~l~iW~l~~~~W~~~~~ 297 (384)
....+.. .+ ..+.+... ......+..| ++.+|..+..
T Consensus 90 pv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 90 PVTALTFISNDGSNFWVAGRSANGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred cEEEEEeeccCCceEEEeceecCCCceEEEE--cCCceEeccc
Confidence 1112222 12 24555432 2323444444 6688988654
No 121
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=28.01 E-value=5e+02 Score=24.21 Aligned_cols=116 Identities=14% Similarity=0.142 Sum_probs=66.1
Q ss_pred CceEEEEEeecCCCCccEEEEEEcCCceeeee---cCCCCCCCCceeEE-EECCeEEEEEecCCCCeEEEEEEcC--Cce
Q 038188 219 NGVFYWFVSRAGDFHSKLILLFRISDEEFQEI---QRPCIPYTPFESLA-PLNGSIALLHLDESNQYIEIWVMNE--MNW 292 (384)
Q Consensus 219 ~G~lywl~~~~~~~~~~~il~fD~~~~~~~~i---~~P~~~~~~~~~l~-~~~G~L~l~~~~~~~~~l~iW~l~~--~~W 292 (384)
+|..-|..+ ...+.|..||++....... .+++. ....+++ --+|+++.+..+- +.++.+|..+. .+-
T Consensus 155 ~~~~l~v~D----LG~Dri~~y~~~dg~L~~~~~~~v~~G--~GPRHi~FHpn~k~aY~v~EL-~stV~v~~y~~~~g~~ 227 (346)
T COG2706 155 DGRYLVVPD----LGTDRIFLYDLDDGKLTPADPAEVKPG--AGPRHIVFHPNGKYAYLVNEL-NSTVDVLEYNPAVGKF 227 (346)
T ss_pred CCCEEEEee----cCCceEEEEEcccCccccccccccCCC--CCcceEEEcCCCcEEEEEecc-CCEEEEEEEcCCCceE
Confidence 455555554 4466777777775555432 23322 2233443 3477766654432 38999999987 555
Q ss_pred eEEEEeCCCCc-c-----ccceEEEeCCEEEEEEeCC--e--EEEEECCCCeEEEEeec
Q 038188 293 IQQFAIGPFLG-V-----KSPCGFWKNNAVLMESING--K--LLLYDLVVQEMRDLGRF 341 (384)
Q Consensus 293 ~~~~~i~~~~~-~-----~~~~~~~~~~~il~~~~~~--~--l~~yd~~t~~~~~v~~~ 341 (384)
..+-++..++. + ...+-+..+|+.+..+.++ . ++..|..+++++-+...
T Consensus 228 ~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~ 286 (346)
T COG2706 228 EELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT 286 (346)
T ss_pred EEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe
Confidence 55555553331 1 2234455688776665432 3 55568888888777663
No 122
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=27.71 E-value=5.7e+02 Score=24.78 Aligned_cols=98 Identities=17% Similarity=0.171 Sum_probs=56.5
Q ss_pred eeeEEeeeCCCCCEEEEEEEEEecccccccccccEEEEEEcCCCccccccCCccccceeecCCcceEEECceEEEEEeec
Q 038188 150 RNAIFGLCDASGDYKVVFICKLWNEKIQDAYEHAHVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNANLNGVFYWFVSRA 229 (384)
Q Consensus 150 ~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~ 229 (384)
..+.|-++..++.+++.++....+. ..-+++|+.....+.
T Consensus 324 ~~Yffnle~~sgg~~~~~~~yIG~~-------kFll~~~~~~~~~~~--------------------------------- 363 (435)
T PF14298_consen 324 KSYFFNLEAKSGGYKFFRVWYIGNN-------KFLLQMYDKALTGTY--------------------------------- 363 (435)
T ss_pred cceEeeeecccCCcceEEEEEecCC-------EEEEEEecccccccC---------------------------------
Confidence 4477777888888888887765443 566777766422211
Q ss_pred CCCCccEEEEEEcCCceeeee-cCCCCC-CCCceeEEEECCeEEEEEecCCCCeEEEEEEcC
Q 038188 230 GDFHSKLILLFRISDEEFQEI-QRPCIP-YTPFESLAPLNGSIALLHLDESNQYIEIWVMNE 289 (384)
Q Consensus 230 ~~~~~~~il~fD~~~~~~~~i-~~P~~~-~~~~~~l~~~~G~L~l~~~~~~~~~l~iW~l~~ 289 (384)
.....+..||+.+.++..+ .+|... .........-+|+.++-.........-||.++-
T Consensus 364 --~~~~~laI~d~~~kt~t~V~glP~~~is~~~~~~~ve~G~aYi~Vtt~~g~~~~IY~iDp 423 (435)
T PF14298_consen 364 --SDAKKLAIFDVSNKTFTWVTGLPADLISGFGNAPYVENGKAYIPVTTEDGSDPYIYKIDP 423 (435)
T ss_pred --CccceEEEEEccCceeEEeccCChhhccccccceEeeCCEEEEEEeecCCCceeEEEEcC
Confidence 0123345678888888876 667652 121112334577777654322222456777763
No 123
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=26.77 E-value=1.3e+02 Score=16.98 Aligned_cols=38 Identities=11% Similarity=0.070 Sum_probs=20.8
Q ss_pred eeEEEEeCCCCccccceEEEeCCEEEEE-EeCCeEEEEE
Q 038188 292 WIQQFAIGPFLGVKSPCGFWKNNAVLME-SINGKLLLYD 329 (384)
Q Consensus 292 W~~~~~i~~~~~~~~~~~~~~~~~il~~-~~~~~l~~yd 329 (384)
|..+.++........-+.+.+++..++. ..++.+.+||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 5556666544433344555555554444 4566777775
No 124
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=26.26 E-value=6.4e+02 Score=24.90 Aligned_cols=102 Identities=13% Similarity=0.148 Sum_probs=57.4
Q ss_pred CccEEEEEEcCC--ceeeeecCCCCCC--CCceeEEEECCeEEEEEecCCCCeEEEEEEcC-CceeEEEEeCCCCccccc
Q 038188 233 HSKLILLFRISD--EEFQEIQRPCIPY--TPFESLAPLNGSIALLHLDESNQYIEIWVMNE-MNWIQQFAIGPFLGVKSP 307 (384)
Q Consensus 233 ~~~~il~fD~~~--~~~~~i~~P~~~~--~~~~~l~~~~G~L~l~~~~~~~~~l~iW~l~~-~~W~~~~~i~~~~~~~~~ 307 (384)
..+.|-..|+.. .++-+-.|+.... .-+.+...-+|+-.++.... ..+.||-|.. .-=+| ..+......+..
T Consensus 438 GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGea--stlsiWDLAapTprik-aeltssapaCyA 514 (705)
T KOG0639|consen 438 GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA--STLSIWDLAAPTPRIK-AELTSSAPACYA 514 (705)
T ss_pred CCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccc--ceeeeeeccCCCcchh-hhcCCcchhhhh
Confidence 356666666643 3333335554431 22334444566644544333 7999999976 11111 111110113556
Q ss_pred eEEEeCCEEEEE-EeCCeEEEEECCCCeEEE
Q 038188 308 CGFWKNNAVLME-SINGKLLLYDLVVQEMRD 337 (384)
Q Consensus 308 ~~~~~~~~il~~-~~~~~l~~yd~~t~~~~~ 337 (384)
+++..|.++.|. ..++.+.+||+.++++-+
T Consensus 515 La~spDakvcFsccsdGnI~vwDLhnq~~Vr 545 (705)
T KOG0639|consen 515 LAISPDAKVCFSCCSDGNIAVWDLHNQTLVR 545 (705)
T ss_pred hhcCCccceeeeeccCCcEEEEEcccceeee
Confidence 677778888665 567889999999998654
No 125
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=26.19 E-value=4.6e+02 Score=23.20 Aligned_cols=51 Identities=14% Similarity=0.092 Sum_probs=30.2
Q ss_pred CceEEEEEeecCCCCccEEEEEEcCCceeeeecCCCCCCC------CceeEEE-ECCeEEEEE
Q 038188 219 NGVFYWFVSRAGDFHSKLILLFRISDEEFQEIQRPCIPYT------PFESLAP-LNGSIALLH 274 (384)
Q Consensus 219 ~G~lywl~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~------~~~~l~~-~~G~L~l~~ 274 (384)
.|.+|-+. .....|+.+|.+.+..+.+++.....+ ..-.++. -+|.||++.
T Consensus 182 t~~lliLS-----~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 182 TGHLLILS-----DESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp TTEEEEEE-----TTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred CCeEEEEE-----CCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 47788887 568999999988888888888764311 1112333 388899885
No 126
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=25.74 E-value=7.6e+02 Score=25.58 Aligned_cols=110 Identities=10% Similarity=0.215 Sum_probs=58.1
Q ss_pred ccEEEEEEcCCceeeeecCCCCC---CCCceeEEE-ECCeEEEEEecCCCCeEEEEEEcC----CceeEEEEeCCCCccc
Q 038188 234 SKLILLFRISDEEFQEIQRPCIP---YTPFESLAP-LNGSIALLHLDESNQYIEIWVMNE----MNWIQQFAIGPFLGVK 305 (384)
Q Consensus 234 ~~~il~fD~~~~~~~~i~~P~~~---~~~~~~l~~-~~G~L~l~~~~~~~~~l~iW~l~~----~~W~~~~~i~~~~~~~ 305 (384)
.+.|...|+++.+-. +|... ......+.. .++...+..... +-+++|.|+. .+|.-.|.-+ .
T Consensus 39 ~d~Vi~idv~t~~~~---l~s~~~ed~d~ita~~l~~d~~~L~~a~rs--~llrv~~L~tgk~irswKa~He~P-----v 108 (775)
T KOG0319|consen 39 GDRVIIIDVATGSIA---LPSGSNEDEDEITALALTPDEEVLVTASRS--QLLRVWSLPTGKLIRSWKAIHEAP-----V 108 (775)
T ss_pred CceEEEEEccCCcee---cccCCccchhhhheeeecCCccEEEEeecc--ceEEEEEcccchHhHhHhhccCCC-----e
Confidence 677888888887765 33322 111223333 344443334444 8899999987 6777655421 1
Q ss_pred cceEEEeCCEEEEE-EeCCeEEEEECCCCeEEEEeeccCCCCcceEEEEEEec
Q 038188 306 SPCGFWKNNAVLME-SINGKLLLYDLVVQEMRDLGRFSSGELGAAILIYCYKE 357 (384)
Q Consensus 306 ~~~~~~~~~~il~~-~~~~~l~~yd~~t~~~~~v~~~~~~~~~~~~~~~~y~~ 357 (384)
..+.+.+.+-++-. ..++.+-+||.+.+.... .+.|.+ +......|-|
T Consensus 109 i~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th-~fkG~g---GvVssl~F~~ 157 (775)
T KOG0319|consen 109 ITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH-SFKGHG---GVVSSLLFHP 157 (775)
T ss_pred EEEEEcCCCceEEeccccceEEEEEeeCCEEEE-EecCCC---ceEEEEEeCC
Confidence 12333444433322 235668888887776533 344444 3444444444
No 127
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=25.66 E-value=6.2e+02 Score=24.47 Aligned_cols=116 Identities=6% Similarity=0.133 Sum_probs=66.5
Q ss_pred EEECceEEEEEeecCCCCccEEEEEEcCCceeeeecCCCCCCCCceeEEEECCeEEEEEecCCCCeEEEEEEcCCceeEE
Q 038188 216 ANLNGVFYWFVSRAGDFHSKLILLFRISDEEFQEIQRPCIPYTPFESLAPLNGSIALLHLDESNQYIEIWVMNEMNWIQQ 295 (384)
Q Consensus 216 v~~~G~lywl~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~l~iW~l~~~~W~~~ 295 (384)
++=||-++=.. .....+=.+|+.+.. ....+|... +.-..+...+...+|+...++ .++.+|=|....=.+.
T Consensus 355 fHpDgLifgtg-----t~d~~vkiwdlks~~-~~a~Fpght-~~vk~i~FsENGY~Lat~add-~~V~lwDLRKl~n~kt 426 (506)
T KOG0289|consen 355 FHPDGLIFGTG-----TPDGVVKIWDLKSQT-NVAKFPGHT-GPVKAISFSENGYWLATAADD-GSVKLWDLRKLKNFKT 426 (506)
T ss_pred EcCCceEEecc-----CCCceEEEEEcCCcc-ccccCCCCC-CceeEEEeccCceEEEEEecC-CeEEEEEehhhcccce
Confidence 34466665544 446777889998877 556777643 333445555566666644331 5699999875111111
Q ss_pred EEeCCCCccccceEEEeCCEEEEEE-eCCeEEEEECCCCeEEEEee
Q 038188 296 FAIGPFLGVKSPCGFWKNNAVLMES-INGKLLLYDLVVQEMRDLGR 340 (384)
Q Consensus 296 ~~i~~~~~~~~~~~~~~~~~il~~~-~~~~l~~yd~~t~~~~~v~~ 340 (384)
+.++-.. -..-+.+...|..+... .+-.++.|+-+++.|.++..
T Consensus 427 ~~l~~~~-~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 427 IQLDEKK-EVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKE 471 (506)
T ss_pred eeccccc-cceeEEEcCCCCeEEeecceeEEEEEecccccceeeeh
Confidence 2221111 11234455556654443 34467888888999988755
No 128
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=25.59 E-value=7e+02 Score=25.11 Aligned_cols=103 Identities=14% Similarity=0.199 Sum_probs=51.3
Q ss_pred ccEEEEEEcCCceeee-ecCCCCCCCCceeEEEECCeEEEEEecCCCCeEEEEEEcCCc----eeEEEEeCCCCcc----
Q 038188 234 SKLILLFRISDEEFQE-IQRPCIPYTPFESLAPLNGSIALLHLDESNQYIEIWVMNEMN----WIQQFAIGPFLGV---- 304 (384)
Q Consensus 234 ~~~il~fD~~~~~~~~-i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~l~iW~l~~~~----W~~~~~i~~~~~~---- 304 (384)
...|..||++.++|-. +..-.. ......+-+++|-|+ +......++.|=.-..+ =.....|...+..
T Consensus 154 g~evYRlNLEqGrfL~P~~~~~~-~lN~v~in~~hgLla---~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~ 229 (703)
T KOG2321|consen 154 GSEVYRLNLEQGRFLNPFETDSG-ELNVVSINEEHGLLA---CGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAP 229 (703)
T ss_pred CcceEEEEccccccccccccccc-cceeeeecCccceEE---ecccCceEEEecchhhhhheeeecccccCCCccccccC
Confidence 7788999999998843 222110 011222233343332 22234788888765411 1111112212211
Q ss_pred -ccceEEEeCCE-EEEEEeCCeEEEEECCCCeEEEEee
Q 038188 305 -KSPCGFWKNNA-VLMESINGKLLLYDLVVQEMRDLGR 340 (384)
Q Consensus 305 -~~~~~~~~~~~-il~~~~~~~l~~yd~~t~~~~~v~~ 340 (384)
...+.+-.+|. +-+.+..|.+++||+++.+--.+..
T Consensus 230 svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd 267 (703)
T KOG2321|consen 230 SVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD 267 (703)
T ss_pred cceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc
Confidence 12233333343 3345667889999999987544433
No 129
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=25.49 E-value=1.6e+02 Score=28.94 Aligned_cols=76 Identities=12% Similarity=0.306 Sum_probs=46.0
Q ss_pred CCeEEEEEEcC-----CceeEEEEeCCCCccccceEEEeCCEEEEEEe-------CCeEEEEECCCC-eEEEEeeccCCC
Q 038188 279 NQYIEIWVMNE-----MNWIQQFAIGPFLGVKSPCGFWKNNAVLMESI-------NGKLLLYDLVVQ-EMRDLGRFSSGE 345 (384)
Q Consensus 279 ~~~l~iW~l~~-----~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~-------~~~l~~yd~~t~-~~~~v~~~~~~~ 345 (384)
...|.+|-|.+ ..|+-+.+. ++ ..-++|.++++|++... .+.|++||..|= ++-+|.+..
T Consensus 385 D~tLKvWDLrq~kkpL~~~tgL~t~--~~--~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~--- 457 (641)
T KOG0772|consen 385 DDTLKVWDLRQFKKPLNVRTGLPTP--FP--GTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIST--- 457 (641)
T ss_pred CCceeeeeccccccchhhhcCCCcc--CC--CCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCC---
Confidence 37899999976 345544331 11 33466777888888732 356999988773 344555542
Q ss_pred CcceEEEEEEeccceeCC
Q 038188 346 LGAAILIYCYKESLIRLK 363 (384)
Q Consensus 346 ~~~~~~~~~y~~sL~~~~ 363 (384)
.+..-+.+.|.|=++-
T Consensus 458 --aSvv~~~WhpkLNQi~ 473 (641)
T KOG0772|consen 458 --ASVVRCLWHPKLNQIF 473 (641)
T ss_pred --ceEEEEeecchhhhee
Confidence 2444566677664443
No 130
>PTZ00420 coronin; Provisional
Probab=24.91 E-value=7.4e+02 Score=25.10 Aligned_cols=117 Identities=9% Similarity=0.052 Sum_probs=58.2
Q ss_pred CceEEEEEeecCCCCccEEEEEEcCCceee-eecCCCCCC-CCceeEEE--ECCeEEEE-EecC-CCCeEEEEEEcC-Cc
Q 038188 219 NGVFYWFVSRAGDFHSKLILLFRISDEEFQ-EIQRPCIPY-TPFESLAP--LNGSIALL-HLDE-SNQYIEIWVMNE-MN 291 (384)
Q Consensus 219 ~G~lywl~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~-~~~~~l~~--~~G~L~l~-~~~~-~~~~l~iW~l~~-~~ 291 (384)
+|.+.-.+ .....|..+|+.+.+-. .+....... .....+.. .++...+. ..+. ..+.+.||-+.. ..
T Consensus 178 dG~lLat~-----s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~ 252 (568)
T PTZ00420 178 KGNLLSGT-----CVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS 252 (568)
T ss_pred CCCEEEEE-----ecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC
Confidence 56654333 23567888898766432 222221110 00011111 23343333 3332 225799999886 33
Q ss_pred eeEEEEeCCCCccccceEEEeCCEEEEE-EeCCeEEEEECCCCeEEEEee
Q 038188 292 WIQQFAIGPFLGVKSPCGFWKNNAVLME-SINGKLLLYDLVVQEMRDLGR 340 (384)
Q Consensus 292 W~~~~~i~~~~~~~~~~~~~~~~~il~~-~~~~~l~~yd~~t~~~~~v~~ 340 (384)
=.....++.......|..-..++.+++. .+++.+.+|++.++.+..+..
T Consensus 253 pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~ 302 (568)
T PTZ00420 253 ALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNE 302 (568)
T ss_pred ceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecc
Confidence 3333333322222233433334666554 567789999998887666543
No 131
>PF13854 Kelch_5: Kelch motif
Probab=24.83 E-value=1.6e+02 Score=17.57 Aligned_cols=31 Identities=10% Similarity=0.173 Sum_probs=21.5
Q ss_pred ceEEECceEEEEEeec--CCCCccEEEEEEcCC
Q 038188 214 NNANLNGVFYWFVSRA--GDFHSKLILLFRISD 244 (384)
Q Consensus 214 ~~v~~~G~lywl~~~~--~~~~~~~il~fD~~~ 244 (384)
+++.+++.+|...+.. .....+.+..+|+.+
T Consensus 9 s~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 9 SAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred EEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 5678899999988754 233456677777754
No 132
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=24.60 E-value=3.5e+02 Score=27.42 Aligned_cols=103 Identities=17% Similarity=0.192 Sum_probs=60.3
Q ss_pred CCccEEEEEEcCCceeee----ecCCCCCCCCceeEEEECCeEEEEEecCCCCeEEEEEEcCCceeEEEEeCCCCccccc
Q 038188 232 FHSKLILLFRISDEEFQE----IQRPCIPYTPFESLAPLNGSIALLHLDESNQYIEIWVMNEMNWIQQFAIGPFLGVKSP 307 (384)
Q Consensus 232 ~~~~~il~fD~~~~~~~~----i~~P~~~~~~~~~l~~~~G~L~l~~~~~~~~~l~iW~l~~~~W~~~~~i~~~~~~~~~ 307 (384)
.+.+.|.-||.....|+. +..|.........+.-..|...++.... ...+..|-++...=+.....--+.+-..-
T Consensus 71 dE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasG-DsT~r~Wdvk~s~l~G~~~~~GH~~SvkS 149 (720)
T KOG0321|consen 71 DEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASG-DSTIRPWDVKTSRLVGGRLNLGHTGSVKS 149 (720)
T ss_pred cCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccC-Cceeeeeeeccceeecceeecccccccch
Confidence 448889999999888871 2334333455666766678888886543 28999999987211111100011222233
Q ss_pred eEEEeCCEEEEEE--eCCeEEEEECCCCeE
Q 038188 308 CGFWKNNAVLMES--INGKLLLYDLVVQEM 335 (384)
Q Consensus 308 ~~~~~~~~il~~~--~~~~l~~yd~~t~~~ 335 (384)
+++...+..+|++ .++.+.+||.+-+.+
T Consensus 150 ~cf~~~n~~vF~tGgRDg~illWD~R~n~~ 179 (720)
T KOG0321|consen 150 ECFMPTNPAVFCTGGRDGEILLWDCRCNGV 179 (720)
T ss_pred hhhccCCCcceeeccCCCcEEEEEEeccch
Confidence 4555555544443 356688888877663
No 133
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=24.22 E-value=86 Score=27.96 Aligned_cols=37 Identities=27% Similarity=0.264 Sum_probs=29.6
Q ss_pred cCCCCHHHHHHHHccCCh-hhhhhhhcccHhhHhhcCC
Q 038188 11 SMLMPEDVRLEILSRLPV-KSLMRLRCVCKSWYALIEN 47 (384)
Q Consensus 11 ~~~LP~dll~eIl~rLp~-~~l~r~r~VcK~W~~li~~ 47 (384)
..+||.+++.+|+.|||- .||.....|--.-..++++
T Consensus 202 l~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e 239 (332)
T KOG3926|consen 202 LHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEE 239 (332)
T ss_pred cccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHH
Confidence 469999999999999994 8998888886555555554
No 134
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=24.19 E-value=4.4e+02 Score=22.28 Aligned_cols=61 Identities=25% Similarity=0.357 Sum_probs=33.9
Q ss_pred CeEEEEEEcC--CceeEEEEeCCCCccccceE-EE-eCCEEEEE--------EeCCeEEEEECCCCeEEEEeec
Q 038188 280 QYIEIWVMNE--MNWIQQFAIGPFLGVKSPCG-FW-KNNAVLME--------SINGKLLLYDLVVQEMRDLGRF 341 (384)
Q Consensus 280 ~~l~iW~l~~--~~W~~~~~i~~~~~~~~~~~-~~-~~~~il~~--------~~~~~l~~yd~~t~~~~~v~~~ 341 (384)
.-=.||+.+. ..|.. ..+++.+.-..|-. .| .+..++++ ..+|.||.||+.|+++..+...
T Consensus 86 giGkIYIkn~~~~~~~~-L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~ 158 (200)
T PF15525_consen 86 GIGKIYIKNLNNNNWWS-LQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEW 158 (200)
T ss_pred cceeEEEEecCCCceEE-EEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeec
Confidence 3446777764 55533 23444321122322 23 24444433 2356799999999999887663
No 135
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=23.91 E-value=6e+02 Score=23.72 Aligned_cols=153 Identities=10% Similarity=0.014 Sum_probs=79.0
Q ss_pred ccEEEEEEcCCCccccccCCccccceeecCCcceEE-ECce-EEEEEeecCCCCccEEEEEEcCCceeeee----cCCCC
Q 038188 182 HAHVAVYTSSTDSWRVSKGNIKWIPYVFESYYNNAN-LNGV-FYWFVSRAGDFHSKLILLFRISDEEFQEI----QRPCI 255 (384)
Q Consensus 182 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~v~-~~G~-lywl~~~~~~~~~~~il~fD~~~~~~~~i----~~P~~ 255 (384)
..++.+|+..++.-...... .++- ...++.-++ =||. +|.++.- .+.-.++.+|....++..+ .+|.+
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~--~v~~-G~GPRHi~FHpn~k~aY~v~EL---~stV~v~~y~~~~g~~~~lQ~i~tlP~d 239 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPA--EVKP-GAGPRHIVFHPNGKYAYLVNEL---NSTVDVLEYNPAVGKFEELQTIDTLPED 239 (346)
T ss_pred CceEEEEEcccCcccccccc--ccCC-CCCcceEEEcCCCcEEEEEecc---CCEEEEEEEcCCCceEEEeeeeccCccc
Confidence 57888999988776654322 1110 111122222 3665 5666642 2344455666666788764 45776
Q ss_pred CCCC--ceeEEE-ECCeEEEEEecCCCCeEEEEEEcC--CceeEEEEeCCCCccccceEEEeCCEEEEEE--eCC--eEE
Q 038188 256 PYTP--FESLAP-LNGSIALLHLDESNQYIEIWVMNE--MNWIQQFAIGPFLGVKSPCGFWKNNAVLMES--ING--KLL 326 (384)
Q Consensus 256 ~~~~--~~~l~~-~~G~L~l~~~~~~~~~l~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~--~~~--~l~ 326 (384)
..+. ...+-. -+|+...+..+. -..+.+...++ +.=..+......-...+.+.+..++.+|+.. ... .++
T Consensus 240 F~g~~~~aaIhis~dGrFLYasNRg-~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 240 FTGTNWAAAIHISPDGRFLYASNRG-HDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred cCCCCceeEEEECCCCCEEEEecCC-CCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 6322 223333 366543333322 24666666665 3222222222212235677777777665542 223 355
Q ss_pred EEECCCCeEEEEeec
Q 038188 327 LYDLVVQEMRDLGRF 341 (384)
Q Consensus 327 ~yd~~t~~~~~v~~~ 341 (384)
.-|.+|+++..+...
T Consensus 319 ~~d~~TG~L~~~~~~ 333 (346)
T COG2706 319 ERDKETGRLTLLGRY 333 (346)
T ss_pred EEcCCCceEEecccc
Confidence 668999998887653
No 136
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=23.76 E-value=5.7e+02 Score=23.42 Aligned_cols=114 Identities=13% Similarity=0.118 Sum_probs=51.3
Q ss_pred eEEECceEEEEEeecCCCCccEEEEEEcCCceeeeecCCCCCCCCceeEEEE-CCeEEEEEecCCCCeEEEEEEcC--Cc
Q 038188 215 NANLNGVFYWFVSRAGDFHSKLILLFRISDEEFQEIQRPCIPYTPFESLAPL-NGSIALLHLDESNQYIEIWVMNE--MN 291 (384)
Q Consensus 215 ~v~~~G~lywl~~~~~~~~~~~il~fD~~~~~~~~i~~P~~~~~~~~~l~~~-~G~L~l~~~~~~~~~l~iW~l~~--~~ 291 (384)
.|..++.--|+... ...|+.-.=..++|+.++++....+....+... ++...++... =.|+.-.+ .+
T Consensus 66 ~I~f~~~~g~ivG~-----~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~-----G~iy~T~DgG~t 135 (302)
T PF14870_consen 66 SISFDGNEGWIVGE-----PGLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR-----GAIYRTTDGGKT 135 (302)
T ss_dssp EEEEETTEEEEEEE-----TTEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT-------EEEESSTTSS
T ss_pred EEEecCCceEEEcC-----CceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC-----CcEEEeCCCCCC
Confidence 44444443456542 455666656788999998765443333444444 4444444322 26777777 89
Q ss_pred eeEEEEeCCCCccccceEEEeCCEEEEEEeCCeEE-EEECCCCeEEEEee
Q 038188 292 WIQQFAIGPFLGVKSPCGFWKNNAVLMESINGKLL-LYDLVVQEMRDLGR 340 (384)
Q Consensus 292 W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~-~yd~~t~~~~~v~~ 340 (384)
|..+.. .... ...-+...+++.++.....+.++ ..|.....|+....
T Consensus 136 W~~~~~-~~~g-s~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r 183 (302)
T PF14870_consen 136 WQAVVS-ETSG-SINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNR 183 (302)
T ss_dssp EEEEE--S-----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE-
T ss_pred eeEccc-CCcc-eeEeEEECCCCcEEEEECcccEEEEecCCCccceEEcc
Confidence 988653 1111 11112223466666665555543 55666666665544
No 137
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=23.49 E-value=4.5e+02 Score=22.10 Aligned_cols=95 Identities=13% Similarity=0.261 Sum_probs=45.9
Q ss_pred ccEEEEEEcCCceeee-ecCCCCCCCCceeEEEE-CCeEEEEEecCCCCeEEEEEEcCCceeEEEEeCCCCccccceEEE
Q 038188 234 SKLILLFRISDEEFQE-IQRPCIPYTPFESLAPL-NGSIALLHLDESNQYIEIWVMNEMNWIQQFAIGPFLGVKSPCGFW 311 (384)
Q Consensus 234 ~~~il~fD~~~~~~~~-i~~P~~~~~~~~~l~~~-~G~L~l~~~~~~~~~l~iW~l~~~~W~~~~~i~~~~~~~~~~~~~ 311 (384)
.+.+..+|+.+..... +..+. .....+... +++..++...+ ..+.+|-++...-.. .+........-+.+.
T Consensus 30 ~g~i~i~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~~--~~i~i~~~~~~~~~~--~~~~~~~~i~~~~~~ 102 (289)
T cd00200 30 DGTIKVWDLETGELLRTLKGHT---GPVRDVAASADGTYLASGSSD--KTIRLWDLETGECVR--TLTGHTSYVSSVAFS 102 (289)
T ss_pred CcEEEEEEeeCCCcEEEEecCC---cceeEEEECCCCCEEEEEcCC--CeEEEEEcCcccceE--EEeccCCcEEEEEEc
Confidence 5566667776554211 11111 111133333 34343333333 788999887622222 222211111223334
Q ss_pred eCCEEEEEEe-CCeEEEEECCCCeE
Q 038188 312 KNNAVLMESI-NGKLLLYDLVVQEM 335 (384)
Q Consensus 312 ~~~~il~~~~-~~~l~~yd~~t~~~ 335 (384)
+++.+++... ++.+..||+++++.
T Consensus 103 ~~~~~~~~~~~~~~i~~~~~~~~~~ 127 (289)
T cd00200 103 PDGRILSSSSRDKTIKVWDVETGKC 127 (289)
T ss_pred CCCCEEEEecCCCeEEEEECCCcEE
Confidence 4556666655 78899999986553
No 138
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=22.11 E-value=1.9e+02 Score=21.85 Aligned_cols=39 Identities=13% Similarity=0.076 Sum_probs=27.3
Q ss_pred CeEEEEccCccc-ccccCCCCCCCCcccccceeeeEEeeeCCCCCEEEEEEE
Q 038188 119 GLITLWNPATKE-CRTLPNYKKNLPALATFLKRNAIFGLCDASGDYKVVFIC 169 (384)
Q Consensus 119 ~~~~V~NP~T~~-~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~ 169 (384)
-+++..||.+++ |... .. ...+.+..|...+.|.|....
T Consensus 16 A~v~~~~p~~~~~W~~~-~~-----------~g~v~~v~d~~~~~y~I~~~~ 55 (111)
T PF00568_consen 16 AQVYQADPDTKRQWSPV-KG-----------TGVVCFVKDNSRRSYFIRLYD 55 (111)
T ss_dssp EEEEEEETTTSESEEES-SS-----------EEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEEcCCCCcEeeC-Ce-----------EEEEEEEEECCCCEEEEEEEE
Confidence 467899999888 8865 11 344557778877788777664
No 139
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.43 E-value=5.3e+02 Score=22.22 Aligned_cols=79 Identities=16% Similarity=0.189 Sum_probs=45.8
Q ss_pred ceeEEEECCeEEEEEecCCCCeEEEEEEcCC-c-eeEEEEeCCC-Cc----------cccceEEEeCCEEEEEEeCCeEE
Q 038188 260 FESLAPLNGSIALLHLDESNQYIEIWVMNEM-N-WIQQFAIGPF-LG----------VKSPCGFWKNNAVLMESINGKLL 326 (384)
Q Consensus 260 ~~~l~~~~G~L~l~~~~~~~~~l~iW~l~~~-~-W~~~~~i~~~-~~----------~~~~~~~~~~~~il~~~~~~~l~ 326 (384)
.....+.+|...++-... ..+-+|-++.. . -.. -.+.|. .. ...-+.+.++|..++...+++.|
T Consensus 14 ~~~~l~~~~~~Ll~iT~~--G~l~vWnl~~~k~~~~~-~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y 90 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSS--GLLYVWNLKKGKAVLPP-VSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSY 90 (219)
T ss_pred ceEEEEeCCCEEEEEeCC--CeEEEEECCCCeeccCC-ccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEE
Confidence 344566666654443333 79999998861 0 000 011111 00 01123345577776666677899
Q ss_pred EEECCCCeEEEEeec
Q 038188 327 LYDLVVQEMRDLGRF 341 (384)
Q Consensus 327 ~yd~~t~~~~~v~~~ 341 (384)
.||.+=+.|-+|...
T Consensus 91 ~y~~~L~~W~~vsd~ 105 (219)
T PF07569_consen 91 SYSPDLGCWIRVSDS 105 (219)
T ss_pred EeccccceeEEeccc
Confidence 999999999998763
No 140
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.39 E-value=1.1e+03 Score=25.41 Aligned_cols=72 Identities=15% Similarity=0.353 Sum_probs=44.2
Q ss_pred eEEEECCeEEEEEecCCCCeEEEEEEcC-CceeEEEEeCCCCccccceEEEeCCEEEE-EEeCCeEEEEECCCCe
Q 038188 262 SLAPLNGSIALLHLDESNQYIEIWVMNE-MNWIQQFAIGPFLGVKSPCGFWKNNAVLM-ESINGKLLLYDLVVQE 334 (384)
Q Consensus 262 ~l~~~~G~L~l~~~~~~~~~l~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~~il~-~~~~~~l~~yd~~t~~ 334 (384)
.-+...+.|=++......+.+.+|.|.+ +.|+.- +...+.....-+-+++...+++ .+++..+-+||++.++
T Consensus 210 NwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvD-tcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 210 NWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD-TCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred ceEEecCCcceEEecCCcceeeEEEeccccceeeh-hhhcccCCcceEEecCccceeEecCCCccEEEEeccccc
Confidence 3445566554544443448999999999 889873 3333332333344454434444 4667778999998876
Done!