BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038190
         (531 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 236/618 (38%), Positives = 328/618 (53%), Gaps = 120/618 (19%)

Query: 10  RTAFKVKPSSSLRNSKKPISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVELN 69
           RT  + K SS   +  +PIS      P SL  ++VS   ++ +L  +L  N KSG ++ +
Sbjct: 19  RTTPRCKLSSLFEHPHRPISPG----PISLTKDTVSNAPDRGQLENFLKSNCKSGHIKRS 74

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           +A   FN++I MQPTP + SFN+LLGA+A  K Y + I L +R++ IGL PDF++LNIL+
Sbjct: 75  EAFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILI 134

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           NC+C +  V      LG +LR+  SP+ VT   L++GLC+  + +EA+GL  K V    R
Sbjct: 135 NCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYR 194

Query: 190 PNVI-------------------------------------PNVICYASIIDGLCKDGFV 212
           PNV+                                     PN++CY +IID LCKDG +
Sbjct: 195 PNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLI 254

Query: 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
           +K + LFL+MKGRGI PD   Y+S+I   C    WE AKG       L  E V+     G
Sbjct: 255 DKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKG-------LFNEMVDE----G 303

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
           V  HP+V+++  +I++LCK   +++A  L   M  RG  PD   Y++LIDG+CL GRIDD
Sbjct: 304 V--HPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDD 361

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------- 382
           AR LFVS+ES+G   D  SYN LIN Y K  ++ EA  LY EM+   + P          
Sbjct: 362 ARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLT 421

Query: 383 --------------------------------------DNSCILEAAELFRTLHNTKFEL 404
                                                  N+ + EA ELF  L N  F+ 
Sbjct: 422 GLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQP 481

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            + +FNCL+DGLCK+ ++  A ELF +L   G EPNV+TYTVMI GLC  G +E A DL 
Sbjct: 482 SIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLF 541

Query: 465 PDMEEK------------IR------ECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
             MEEK            +R      E  K +ELL +MA++   PD  T+SI+ +LL+KD
Sbjct: 542 LGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVVDLLSKD 601

Query: 507 ENCHECMNLLPSFLSRNQ 524
           E   E ++LLP+F ++ Q
Sbjct: 602 EKYREYLHLLPTFPAQGQ 619


>gi|255559961|ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539836|gb|EEF41416.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 628

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 224/619 (36%), Positives = 326/619 (52%), Gaps = 113/619 (18%)

Query: 1   MPSSSPATSRTAFKVKPSSSLRNSKKPISLNSEN----EPSSLHSNSVSTVEEKTKLLKY 56
           + ++S A   + F    + ++ N K    +++E     +  +L  NS    +    L ++
Sbjct: 17  LSAASTAKLSSLFTSLHTHAISNLKTSPKISNEQFINFKSKTLPINSTPNTQSDNPLEQF 76

Query: 57  LSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           L  N KSG+  L++AL FFN MIHMQ TP +  FN+L GALA KK Y++ I +  R+N+I
Sbjct: 77  LEINCKSGDFTLHEALHFFNQMIHMQTTPALSRFNNLFGALAKKKQYLHVISMCGRMNSI 136

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GLL +F+SLNIL+NC C +  V + FV  G ILRK + P+  T   L++GLC++GK  EA
Sbjct: 137 GLLKNFISLNILLNCLCSVKRVFEGFVVFGMILRKGYRPNTRTFTNLVKGLCLEGKIGEA 196

Query: 177 SGLFTKFVAFDCRPNVI-------------------------------------PNVICY 199
             +F     FDCRP+ I                                     P V+ Y
Sbjct: 197 VRVFKIMGVFDCRPSAITCGVLISGLCRTGNTCNALKLHEAMINGNSDFGINCKPTVVSY 256

Query: 200 ASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE 259
           + IID LCKDG V + +  F++MK +GI+P+   Y SL+   C A  WE+AK        
Sbjct: 257 SCIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWEEAK-------R 309

Query: 260 LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSS 319
           L  E V+ +G L     PDV+++  +I +LCK   V +A  LF  M  R + P    Y+ 
Sbjct: 310 LFIEMVD-HGLL-----PDVVTFSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNI 363

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           LI+GYCL G +D+ +K+F+S+ ++ C  D  SY+ L+ +Y K  +V  A+ LY EM+  G
Sbjct: 364 LIEGYCLAGMVDEGKKIFLSMVNKRCQHDAGSYSILMKAYCKDSEVHGAMILYREMMDRG 423

Query: 380 VRP-----------------------------------------DNSCILEAAELFRTLH 398
           ++P                                          N C+ EA ++F  L 
Sbjct: 424 IQPTVITYSKVGDARKLFGEIQFQDMVLDSISYSIYNVYLDGLCKNGCVSEALDVFYGLE 483

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
           N KF  ++ +FN L++G+C+S +L  AWELF +L     +P+VVTYT+MI GLC  G  +
Sbjct: 484 NCKFASNVAIFNSLINGMCRSEKLEIAWELFNRLCNEALQPDVVTYTIMIYGLCKVGQPQ 543

Query: 459 KAYDLLPDMEEK------------IRE-CL-----KAIELLHKMAKRYVKPDEITVSILE 500
           KAYDL  +MEEK            +R  CL     K +ELLHKMA R + PD  T+ I+ 
Sbjct: 544 KAYDLFLEMEEKGCAPNVVTFNTLMRGLCLNSERPKIVELLHKMAARKLSPDASTLLIVM 603

Query: 501 ELLNKDENCHECMNLLPSF 519
           ++L KDEN HEC+NLLP+F
Sbjct: 604 DILLKDENYHECLNLLPTF 622



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 104/250 (41%), Gaps = 41/250 (16%)

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           ++N LC    V +   +F  +  +G  P+   +++L+ G CL G+I +A ++F  +    
Sbjct: 148 LLNCLCSVKRVFEGFVVFGMILRKGYRPNTRTFTNLVKGLCLEGKIGEAVRVFKIMGVFD 207

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL 404
           C P   +   LI+   +      AL L+  MI+                     N+ F +
Sbjct: 208 CRPSAITCGVLISGLCRTGNTCNALKLHEAMIN--------------------GNSDFGI 247

Query: 405 D----LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
           +    +  ++C++D LCK   +  A E F ++   G  PNVVTYT ++ GLC     E+A
Sbjct: 248 NCKPTVVSYSCIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWEEA 307

Query: 461 YDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
             L  +M +            H +      PD +T S+L   L K     E   L    +
Sbjct: 308 KRLFIEMVD------------HGLL-----PDVVTFSVLIGALCKVGKVKEASGLFDLMV 350

Query: 521 SRNQEESKLT 530
            R  E S  T
Sbjct: 351 QRYVEPSTRT 360


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 220/617 (35%), Positives = 321/617 (52%), Gaps = 133/617 (21%)

Query: 9   SRTAFKVKPSSSLRNSKKPISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVEL 68
           + T+  V  +SS+RNS            SSL ++S S +      + +   + K+G V  
Sbjct: 2   ASTSNTVPSASSIRNSN----------LSSLFTHS-SAIPSPNPQIAFFLRHCKTGNVTA 50

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
             AL FF+ M+   PTP + SFN LL  LA  K+Y     L  ++   GL  D  +LNIL
Sbjct: 51  THALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNIL 110

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           +NC C +  + + F A   ILR+ +SP++VT   LI+GLCM+ + +EA+ LF +     C
Sbjct: 111 LNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGC 170

Query: 189 RPNVI-------------------------------------PNVICYASIIDGLCKDGF 211
            P+V+                                     PNVI Y  I+DGLCK G 
Sbjct: 171 TPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGR 230

Query: 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGEL 271
            ++ + LF +MK +G+ P    YNSLI  +CCA  WE++K        L +E ++     
Sbjct: 231 EDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESK-------RLLDEMLDQG--- 280

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
                PD++++  +I++LCK+  V +AK+L   M   GI+PD+V Y+SLI+G+C++G ++
Sbjct: 281 ---LQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLN 337

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------- 383
            AR+LFVS+ S+GC PD  SYN LIN YSK  KVEEA+ LY EM+ +G RP+        
Sbjct: 338 SARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLL 397

Query: 384 ----------------------------------------NSCILEAAELFRTLHNTKFE 403
                                                   N C+ EA +LF  L ++ F+
Sbjct: 398 KGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFK 457

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
           L++   NCL+DGLCK+ +L +AWELF+KL   G EPNVVTYT+MI G C EG ++KA  L
Sbjct: 458 LEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVL 517

Query: 464 LPDME---------------------EKIRECLKAIELLHKMAKRYVKPDEITVSILEEL 502
           +  ME                      K+ E    ++LLH+MA++ V PD IT SI+ ++
Sbjct: 518 IQKMEANGCTPDIITYNTLMRGFYESNKLEE---VVQLLHRMAQKDVSPDAITCSIVVDM 574

Query: 503 LNKDENCHECMNLLPSF 519
           L+KDE   EC++LLP F
Sbjct: 575 LSKDEKYQECLHLLPRF 591


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 209/622 (33%), Positives = 313/622 (50%), Gaps = 135/622 (21%)

Query: 17  PSSSLRNSKKPISLNSENEPSSL-------HSNSVSTV---EEKTKLLKYLS---ENSKS 63
           PS S + +  P+S +S   PSS+       H N +       E+      LS    N K+
Sbjct: 8   PSPSFKPNLSPLSTHSSTIPSSIPQTSSTHHPNPILPAAFNREEISFHHPLSLFLRNCKT 67

Query: 64  GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV 123
           G +    A  FF+ M+   P P + SFN LLG LA   +Y     L   +   GL PD  
Sbjct: 68  GNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLF 127

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           +L+IL NC C +  VS+A  A+  ILR+ + P+VVT   LI+GLCM+ + +EA+ LF + 
Sbjct: 128 TLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRM 187

Query: 184 VAFDCRPNVI-------------------------------------PNVICYASIIDGL 206
               C PN +                                     P VI Y+ IIDGL
Sbjct: 188 QKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGL 247

Query: 207 CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266
           CK G  ++ + LF +MK +G+ PD   Y++LI  +CCA  W+ +K        L +E V+
Sbjct: 248 CKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSK-------HLFDEMVD 300

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
                GV   PD++++  +I++LCK+  V +AK+L   M  RGI+P+++ Y+SLIDG+C+
Sbjct: 301 Q----GV--QPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCM 354

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--- 383
           +G ++ AR+LF+S+ S+G  PD  SY TLIN Y K  KV+EA++LY EM+ +G  P+   
Sbjct: 355 VGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTT 414

Query: 384 ---------------------------------------------NSCILEAAELFRTLH 398
                                                        N C+ EA ELF  L 
Sbjct: 415 YGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELK 474

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
           +  F+L++  ++CL+DGLCK+ +L +AWELF+KL + G +P+VVTY +MI G C  G ++
Sbjct: 475 SYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVD 534

Query: 459 KAYDLLPDMEE---------------------KIRECLKAIELLHKMAKRYVKPDEITVS 497
            A  L   MEE                     K+ E +K   LLHKM ++ V P+  + +
Sbjct: 535 NANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIK---LLHKMVQKDVSPNAASCT 591

Query: 498 ILEELLNKDENCHECMNLLPSF 519
           I+ ++L KDE   + ++LLP F
Sbjct: 592 IVVDMLCKDEKYKKFVDLLPKF 613



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 107/403 (26%), Positives = 177/403 (43%), Gaps = 68/403 (16%)

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L NC    I    AF     ++R    P + +   L+ GL     +++   L+ +     
Sbjct: 62  LRNCKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRL-- 119

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG---RGIYPDAFVYNSLIRVYCCA 244
               + P++   + + + LC    VN+V      M G   RG  P+   Y +LI+  C  
Sbjct: 120 --AGLSPDLFTLSILANCLCN---VNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCME 174

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA----KE 300
               +A   T   L + +        LG  C P+ ++Y ++I  LC+   V+ A    KE
Sbjct: 175 HRISEA---TRLFLRMQK--------LG--CTPNAVTYGTLIKGLCQTGNVNIALKLHKE 221

Query: 301 LFLDMKSRGI--IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
           +  D    G+   P V+ YS +IDG C +GR D+A++LF  ++++G IPD  SY+TLI+ 
Sbjct: 222 MLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHG 281

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
           +    K +++  L+ EM+  GV+PD                      +  F+ L+D LCK
Sbjct: 282 FCCAGKWDQSKHLFDEMVDQGVQPD----------------------MVTFSVLIDTLCK 319

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAI 478
             ++  A +L + + + G  PN++TY  +I G C+ G +  A                  
Sbjct: 320 EGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSAR----------------- 362

Query: 479 ELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
           EL   M  + ++PDEI+ + L     K     E MNL    L 
Sbjct: 363 ELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQ 405



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 116/246 (47%), Gaps = 33/246 (13%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PD+ +   + N LC    V +A      +  RG IP+VV Y++LI G C+  RI +A +L
Sbjct: 124 PDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRL 183

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
           F+ ++  GC P+  +Y TLI    +   V  AL L+ EM++   +   +C          
Sbjct: 184 FLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNC---------- 233

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
                 +  +  ++ ++DGLCK  R   A ELF+++   G  P+V++Y+ +I G C  G 
Sbjct: 234 ------KPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGK 287

Query: 457 IEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
            +++                   L  +M  + V+PD +T S+L + L K+    E   LL
Sbjct: 288 WDQSK-----------------HLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLL 330

Query: 517 PSFLSR 522
              + R
Sbjct: 331 EVMIQR 336


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 205/604 (33%), Positives = 293/604 (48%), Gaps = 125/604 (20%)

Query: 1   MPSSSPATSRTAFKVKP--SSSLRNSKKPISLNSENEPSSLHSNSVSTVEEK-------T 51
           M S+S      +  VKP  SSSL      I  ++ +  S++H  S++   +         
Sbjct: 1   MASTSKTVPSASSIVKPNLSSSLFTHSPTIPSSNPHFSSAVHHKSLNVSPQNFNTPISFQ 60

Query: 52  KLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSE 111
           + L     N K+G +    A  FF+ M++  PTP + SF  LL  LA  K+Y     L  
Sbjct: 61  QQLSMFLHNCKTGNITATQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYN 120

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           ++   G+ PD  +LNIL+NC C +  V +    +  ILR+ + PD+VT   LI+GLCM+ 
Sbjct: 121 QMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEH 180

Query: 172 KFTEASGLFTKFVAFDCRPNVI-------------------------------------P 194
           + ++A+ LFT+     C PN I                                     P
Sbjct: 181 RISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKP 240

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
            VI Y+ IID LCKD   ++ R LF +MK +G+ P    Y SLI  +CC   WE+AK   
Sbjct: 241 VVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAK--- 297

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
                L  E VN     GV   P+V+++  +I+ LCK+  V +AK+L   M  RGI+P++
Sbjct: 298 ----RLFNEMVNQ----GV--QPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNL 347

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           + Y+SLI+G+CL+G ++ AR+LFVS+ S+GC PD   Y  LIN Y K  KVEEA+ LY  
Sbjct: 348 LTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNG 407

Query: 375 MISMGVRPD------------------------------------------------NSC 386
           M+ +G RPD                                                N C
Sbjct: 408 MLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGC 467

Query: 387 ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTV 446
           + EA ELF  L +   +LD+  FNCL+DGLCK+ +L +AWELF+KLP+   +P+VVTY +
Sbjct: 468 LFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNI 527

Query: 447 MICGLCIEGGIEKAYDLLPDME------EKI------------RECLKAIELLHKMAKRY 488
           MI   C  G + KA  L   ME      +KI            ++  K +ELLH M +R 
Sbjct: 528 MIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQRD 587

Query: 489 VKPD 492
           V  D
Sbjct: 588 VSLD 591


>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 203/625 (32%), Positives = 297/625 (47%), Gaps = 174/625 (27%)

Query: 9   SRTAFKVKPSSSLRNSKKPISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVEL 68
           + T+  V  +SS+RNS            SSL ++S S +      + +   + K+G V  
Sbjct: 2   ASTSNTVPSASSIRNSNL----------SSLFTHS-SAIPSPNPQIAFFLRHCKTGNVTA 50

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
             AL FF+ M+   PTP + SFN LL  LA  K+Y     L  ++   GL  D  +LNIL
Sbjct: 51  THALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNIL 110

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           +NC C +  + + F A   ILR+ +S                                  
Sbjct: 111 LNCLCNVNRLREGFAAFAGILRRGYS---------------------------------- 136

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
                PN++ Y ++I GLC +  +++   LFL M+  G  PD   Y +LI+  C      
Sbjct: 137 -----PNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLC------ 185

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
              GN + AL+LH+E +N      + C P+V++Y  I++ LCK    D+AK+LF +MK++
Sbjct: 186 -GTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQ 244

Query: 309 G---------------------------------------------IIPDVVVYSSLIDG 323
           G                                             I+PD+V Y+SLI+G
Sbjct: 245 GMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEG 304

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           +C++G ++ AR+LFVS+ S+GC PD  SYN LIN YSK  KVEEA+ LY EM+ +G RP+
Sbjct: 305 FCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPN 364

Query: 384 ------------------------------------------------NSCILEAAELFR 395
                                                           N C+ EA +LF 
Sbjct: 365 VITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFT 424

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            L ++ F+L++   NCL+DGLCK+ +L +AWELF+KL   G EPNVVTYT+MI G C EG
Sbjct: 425 ELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREG 484

Query: 456 GIEKAYDLLPDME---------------------EKIRECLKAIELLHKMAKRYVKPDEI 494
            ++KA  L+  ME                      K+ E    ++LLH+MA++ V PD I
Sbjct: 485 QVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEE---VVQLLHRMAQKDVSPDAI 541

Query: 495 TVSILEELLNKDENCHECMNLLPSF 519
           T SI+ ++L+KDE   EC++LLP F
Sbjct: 542 TCSIVVDMLSKDEKYQECLHLLPRF 566


>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 585

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 196/566 (34%), Positives = 293/566 (51%), Gaps = 102/566 (18%)

Query: 29  SLNSENEPSSLHSNSVSTVEEKTKL---LKYLSENSKSGEVELNDALCFFNYMIHMQPTP 85
            ++S N P SLH+     + E+  L   L     N K G +    AL FF+ M+      
Sbjct: 40  QISSANHPKSLHA-----LSERISLQHGLPMFIHNCKKGNITSTQALQFFDLMMRS---- 90

Query: 86  FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVAL 145
            + SFN LLGALA  K+Y     L ++++  GL P+F +LNIL+NC C +  V +   A+
Sbjct: 91  -IISFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILINCLCNVNRVREGLSAM 149

Query: 146 GRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDG 205
             I+R+ + PDVVT   LI+GLCM+ + +EA+ LF +     C PNV+     Y ++I G
Sbjct: 150 AGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVT----YGTLIKG 205

Query: 206 LCKDGFVNKVRVLFLDM-KGRGIY-----PDAFVYNSLIRVYCCAVNWEDAKGNTSAALE 259
           LC+ G +N    L  +M  G   Y     P+ F YN +I   C    W++AK        
Sbjct: 206 LCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAK-------R 258

Query: 260 LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSS 319
           L  E V+     GV   PDV+++ ++I++LCK+ +V +AK+    M  RGI+PD+  ++S
Sbjct: 259 LFNEMVDQ----GV--RPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTS 312

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           LI+G+CL+G +D A++LF+S+ S+G  PD  SY  LI  Y K   VEEA+ LY EM+ +G
Sbjct: 313 LIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVG 372

Query: 380 VRPD------------------------------------------------NSCILEAA 391
             PD                                                N C+ EA 
Sbjct: 373 KWPDMKTFCVLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAM 432

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
           ELF  L +   +LD+  FNCL+DGLCK+ +L +AWELF+KL + G +P+VVTY +MI G 
Sbjct: 433 ELFNELKSYNMKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMINGF 492

Query: 452 CIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDE 493
           C  G ++ A  L   MEE                  K  +  + ++LLHKM ++ V    
Sbjct: 493 CKNGQVDNANILFQMMEENGCTPNLLTYSALLHGFYKNNKLEEVVKLLHKMIQKDVSLAA 552

Query: 494 ITVSILEELLNKDENCHECMNLLPSF 519
              +I+E++++KDE C E +++L  F
Sbjct: 553 SIYTIVEDMVSKDEKCREWLDILQRF 578


>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 597

 Score =  301 bits (770), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 202/604 (33%), Positives = 290/604 (48%), Gaps = 133/604 (22%)

Query: 1   MPSSSPATSRTAFKVKP--SSSLRNSKKPISLNSENEPSSLHSNSVSTVEEK-------T 51
           M S+S      +  VKP  SSSL      I  ++ +  S++H  S++   +         
Sbjct: 1   MASTSKTVPSASSIVKPNLSSSLFTHSPTIPSSNPHFSSAVHHKSLNVSPQNFNTPISFQ 60

Query: 52  KLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSE 111
           + L     N K+G +    A  FF+ M++  PTP + SF  LL  LA  K+Y     L  
Sbjct: 61  QQLSMFLHNCKTGNITAIQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYN 120

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           ++   G+ PD  +LNIL+NC C +  V +    +  ILR+ + PD+VT   LI+GLCM+ 
Sbjct: 121 QMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEH 180

Query: 172 KFTEASGLFTKFVAFDCRPNVI-------------------------------------P 194
           + ++A+ LFT+     C PN I                                     P
Sbjct: 181 RISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKP 240

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
            VI Y+ IID LCKD   ++ R LF +MK +G+ P    Y SL+        WE+AK   
Sbjct: 241 VVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLM--------WEEAK--- 289

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
                L  E VN     GV   P+V+++  +I+ LCK+  V +AK+L   M  RGI+P++
Sbjct: 290 ----RLFNEMVNQ----GV--QPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNL 339

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           + Y+SLI+G+CL+G ++ AR+LFVS+ S+GC PD   Y  LIN Y K  KVEEA+ LY  
Sbjct: 340 LTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNG 399

Query: 375 MISMGVRPD------------------------------------------------NSC 386
           M+ +G RPD                                                N C
Sbjct: 400 MLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGC 459

Query: 387 ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTV 446
           + EA ELF  L +   +LD+  FNCL+DGLCK+ +L +AWELF+KLP+   +P+VVTY +
Sbjct: 460 LFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNI 519

Query: 447 MICGLCIEGGIEKAYDLLPDME------EKI------------RECLKAIELLHKMAKRY 488
           MI   C  G + KA  L   ME      +KI            ++  K +ELLH M +R 
Sbjct: 520 MIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQRD 579

Query: 489 VKPD 492
           V  D
Sbjct: 580 VSLD 583


>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 588

 Score =  285 bits (729), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 185/573 (32%), Positives = 292/573 (50%), Gaps = 96/573 (16%)

Query: 29  SLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMP 88
            ++S N P SLH+ S   +  +  +  +L +  K+G + +  A  FF+ M+       + 
Sbjct: 40  QISSANNPKSLHA-SPERISFQHGIPMFLHK-CKTGSISVTQAHQFFDLMMRS-----IF 92

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           SFN LL  LA  ++Y     L ++++  GL PD ++LNIL+NC C +  +++   A+  I
Sbjct: 93  SFNRLLAGLAKIEHYSQVFSLYKQMHLAGLWPDLLTLNILINCLCNVNRINEGLAAMAGI 152

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
           +R+ + PDVVT   LI+GLC++ +  EA+ LF +     C PNV+     Y ++I GLC 
Sbjct: 153 MRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKLGCTPNVVT----YGTLIKGLCA 208

Query: 209 DGFVN---KVRVLFLDMKGRGIY---PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
            G +N   K     L+     ++   P+   Y+ +I   C   NWE+A       + L  
Sbjct: 209 LGNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEA-------ICLFN 261

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
           E V+     GV   P+V+++  +I+ LCK+  V KAK+L   M   GI+P++  Y+SLI 
Sbjct: 262 EMVDQ----GV--QPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIK 315

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
           G+CL+G ++ A++LFVS+ S+G  PD  SYN LIN Y K  KVEEA+ L+ EM+ +G+ P
Sbjct: 316 GFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWP 375

Query: 383 D------------------------------------------------NSCILEAAELF 394
           D                                                N  I EA +LF
Sbjct: 376 DVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLF 435

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
             L +   +LD+  F CL+DGLCK+ +L +AWELF+KL   G +P+ + Y+ MI G C +
Sbjct: 436 NELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKK 495

Query: 455 GGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITV 496
           G ++KA  L   MEE                  +  +  K ++LLH+M ++ V PD+   
Sbjct: 496 GQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLHRMIEKDVWPDDGIY 555

Query: 497 SILEELLNKDENCHECMNLLPSFLSRNQEESKL 529
           +I+E+++ KDE   E ++LL  F  +      L
Sbjct: 556 AIVEDMVCKDEKYKEWLDLLQRFFVQKHRNGYL 588


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 171/551 (31%), Positives = 267/551 (48%), Gaps = 110/551 (19%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+DAL  FN M+HM P P +  F  LL ++   K+Y   + LS ++++ G+ P+  +LNI
Sbjct: 49  LDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNI 108

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N FC +  +  AF  L +IL+    P++ T   LIRGLC++GK  E   LF K +   
Sbjct: 109 LINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEG 168

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
            +PNV+                               P+V+ Y SIID LCKD  V +  
Sbjct: 169 FQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAF 228

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            LF +M  +GI P  F YNSLI   C    W+           L  E VN          
Sbjct: 229 NLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTA-------LLNEMVNSK------IM 275

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+V+ + +++++LCK+  V +A ++   M  RG+ P+VV Y++L+DG+CL   +D+A K+
Sbjct: 276 PNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKV 335

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVE------------------------------ 366
           F ++  +G  PD  SY+TLIN Y KI+++E                              
Sbjct: 336 FDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCH 395

Query: 367 -----EALSLYGEMISMGVRPD--NSCIL-----------EAAELFRTLHNTKFELDLTV 408
                +A++L+ EM++ G  PD  + CIL           EA  L + +  +  + D+ +
Sbjct: 396 VGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQI 455

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +  ++DG+C++  L +A +LF  L   G  PNV TYT+MI GLC +G + +A  L  +M+
Sbjct: 456 YTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMK 515

Query: 469 EK----------------IR--ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCH 510
            K                +R  E L+ I+LL +M  R    D  T ++L E+L+ D    
Sbjct: 516 RKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDDGLDQ 575

Query: 511 ECMNLLPSFLS 521
               +L  FL 
Sbjct: 576 SVKQILSEFLQ 586



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 88/219 (40%), Gaps = 39/219 (17%)

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           P +  ++ L+     M        L   ++S G  P+  + N LINS+  ++++  A S+
Sbjct: 66  PSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSV 125

Query: 372 YGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
             +++ +G +P+                      +  FN L+ GLC   ++     LF K
Sbjct: 126 LAKILKLGHQPN----------------------IATFNTLIRGLCVEGKIGEVLHLFDK 163

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKP 491
           +   G +PNVVTY  +I GLC                 K+     AI LL  M +   +P
Sbjct: 164 MIGEGFQPNVVTYGTLINGLC-----------------KVGSTSAAIRLLRSMEQGNCQP 206

Query: 492 DEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           D +  + + + L KD    +  NL    + +    S  T
Sbjct: 207 DVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFT 245


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 169/550 (30%), Positives = 264/550 (48%), Gaps = 109/550 (19%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+DAL  FN M+HM P P    FN LL ++A  K Y     LS ++++ G+ PD  +LNI
Sbjct: 50  LDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNI 109

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N FC +  +  AF  L +IL+    PD  T   LIRGLC++GK  +A  LF K +   
Sbjct: 110 LINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEG 169

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
            +PNV+                               P+V+ Y SIID LCKD  V +  
Sbjct: 170 FQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAF 229

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            LF  M G+GI PD F Y SLI   C    W+           L  + +N          
Sbjct: 230 NLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVT-------TLLNQMINSK------IM 276

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PDV+ + +++++LCK+  + +A ++   M  RG+ P+VV Y++L+DG+CL   +D+A K+
Sbjct: 277 PDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKV 336

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIE--------------------------------- 363
           F ++   G  P+  SYNTLIN Y KI+                                 
Sbjct: 337 FDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHXCHV 396

Query: 364 -KVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVF 409
            ++++A++L+ EM++ G  PD              S + EA  L +T+  +  + D+ ++
Sbjct: 397 GRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIY 456

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
             ++DG+C++  L +A ++F  L   G  PNV TYT+MI GLC  G +++A  L  +M+ 
Sbjct: 457 TIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDG 516

Query: 470 ------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHE 511
                             + +E L+AI+LL +M  R    D  T ++L E+L  D+    
Sbjct: 517 NGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLCDDKLDQS 576

Query: 512 CMNLLPSFLS 521
              +L  F+ 
Sbjct: 577 VKQILSEFVQ 586



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 182/379 (48%), Gaps = 31/379 (8%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++ +A   F+ M+    +P + ++ SL+ +L     + +   L  ++    ++PD V  +
Sbjct: 224 QVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFS 283

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            +++  CK   +++A   +  ++ +   P+VVT   L+ G C+Q +  EA  +F   V  
Sbjct: 284 TVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMV-- 341

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                  PNVI Y ++I+G CK   ++K   LF +M  + + P+   YN+L+  + C V 
Sbjct: 342 --HNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLM--HXCHV- 396

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G    A+ L  E V  +G++     PD+ +Y  +++ LCK   +D+A  L   ++
Sbjct: 397 -----GRLQDAIALFHEMV-AHGQI-----PDLATYRILLDYLCKKSHLDEAMALLKTIE 445

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
              + PD+ +Y+ +IDG C  G ++ AR +F ++ S+G  P+  +Y  +IN   +   ++
Sbjct: 446 GSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLD 505

Query: 367 EALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLV 413
           EA  L+ EM   G  PD             N   L A +L + +    F  D++    LV
Sbjct: 506 EANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLV 565

Query: 414 DGLCKSWRLRSAWELFKKL 432
           + LC     +S  ++  + 
Sbjct: 566 EMLCDDKLDQSVKQILSEF 584



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 90/228 (39%), Gaps = 39/228 (17%)

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           +D A   F  M      P  V ++ L+       +      L   ++S G  PD  + N 
Sbjct: 50  LDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNI 109

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           LINS+  + ++  A S+  +++ +G +PD +                       F  L+ 
Sbjct: 110 LINSFCHLNRLGFAFSVLAKILKLGHQPDTA----------------------TFTTLIR 147

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC 474
           GLC   ++  A  LF K+   G +PNVVTY  +I GLC                 K+   
Sbjct: 148 GLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLC-----------------KVGNT 190

Query: 475 LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
             AI LL  M +   +PD +  + + + L KD    E  NL    + +
Sbjct: 191 NAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQ 238


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score =  269 bits (688), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 171/551 (31%), Positives = 267/551 (48%), Gaps = 110/551 (19%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+DAL  FN M+HM P P +  F  LL ++   K+Y   + LS ++++ G+ P+  +LNI
Sbjct: 40  LDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNI 99

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N FC +  +  AF  L +IL+    P++ T   LIRGLC++GK  E   LF K +   
Sbjct: 100 LINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEG 159

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
            +PNV+                               P+V+ Y SIID LCKD  V +  
Sbjct: 160 FQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAF 219

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            LF +M  +GI P  F YNSLI   C    W+           L  E VN          
Sbjct: 220 NLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTA-------LLNEMVNSK------IM 266

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+V+ + +++++LCK+  V +A ++   M  RG+ P+VV Y++L+DG+CL   +D+A K+
Sbjct: 267 PNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKV 326

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVE------------------------------ 366
           F ++  +G  PD  SY+TLIN Y KI+++E                              
Sbjct: 327 FDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCH 386

Query: 367 -----EALSLYGEMISMGVRPD--NSCIL-----------EAAELFRTLHNTKFELDLTV 408
                +A++L+ EM++ G  PD  + CIL           EA  L + +  +  + D+ +
Sbjct: 387 VGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQI 446

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +  ++DG+C++  L +A +LF  L   G  PNV TYT+MI GLC +G + +A  L  +M+
Sbjct: 447 YTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMK 506

Query: 469 EK----------------IR--ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCH 510
            K                +R  E L+ I+LL +M  R    D  T ++L E+L+ D    
Sbjct: 507 RKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDDGLDQ 566

Query: 511 ECMNLLPSFLS 521
               +L  FL 
Sbjct: 567 SVKQILSEFLQ 577



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 88/219 (40%), Gaps = 39/219 (17%)

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           P +  ++ L+     M        L   ++S G  P+  + N LINS+  ++++  A S+
Sbjct: 57  PSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSV 116

Query: 372 YGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
             +++ +G +P+                      +  FN L+ GLC   ++     LF K
Sbjct: 117 LAKILKLGHQPN----------------------IATFNTLIRGLCVEGKIGEVLHLFDK 154

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKP 491
           +   G +PNVVTY  +I GLC                 K+     AI LL  M +   +P
Sbjct: 155 MIGEGFQPNVVTYGTLINGLC-----------------KVGSTSAAIRLLRSMEQGNCQP 197

Query: 492 DEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           D +  + + + L KD    +  NL    + +    S  T
Sbjct: 198 DVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFT 236


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 169/551 (30%), Positives = 263/551 (47%), Gaps = 110/551 (19%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+DAL  FN M+HM P P    FN LL ++A  K Y     LS ++++ G+ PD  +LNI
Sbjct: 48  LDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNI 107

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N FC +     AF  L +IL+    PD  T   LIRGLC++GK  +A  LF K +   
Sbjct: 108 LINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEG 167

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
            +PNV+                               P+V+ Y SIID LCKD  V +  
Sbjct: 168 FQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAF 227

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            LF  M G+GI PD F Y SLI   C    W+           L  + +N          
Sbjct: 228 NLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVT-------TLLNQMINSK------IM 274

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PDV+ + +++++LCK+  + +A ++   M  RG+ P+VV Y++L+DG+CL   +D+A K+
Sbjct: 275 PDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKV 334

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIE--------------------------------- 363
           F ++   G  P+  SYNTLIN Y KI+                                 
Sbjct: 335 FDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCH 394

Query: 364 --KVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTV 408
             ++++A++L+ EM++ G  PD              S + EA  L +T+  +  + D+ +
Sbjct: 395 VGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQI 454

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +  ++DG+C++  L +A ++F  L   G  PNV TYT+MI GLC  G +++A  L  +M+
Sbjct: 455 YTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMD 514

Query: 469 E------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCH 510
                              + +E L+AI+LL +M  R    D  T ++L E+L  D+   
Sbjct: 515 GNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLCDDKLDQ 574

Query: 511 ECMNLLPSFLS 521
               +L  F+ 
Sbjct: 575 SVKQILSEFVQ 585



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 181/379 (47%), Gaps = 30/379 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++ +A   F+ M+    +P + ++ SL+ +L     + +   L  ++    ++PD V  +
Sbjct: 222 QVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFS 281

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            +++  CK   +++A   +  ++ +   P+VVT   L+ G C+Q +  EA  +F   V  
Sbjct: 282 TVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMV-- 339

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                  PNVI Y ++I+G CK   ++K   LF +M  + + P+   YN+L+   C    
Sbjct: 340 --HNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGR 397

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            +D       A+ L  E V  +G++     PD+ +Y  +++ LCK   +D+A  L   ++
Sbjct: 398 LQD-------AIALFHEMV-AHGQI-----PDLATYRILLDYLCKKSHLDEAMALLKTIE 444

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
              + PD+ +Y+ +IDG C  G ++ AR +F ++ S+G  P+  +Y  +IN   +   ++
Sbjct: 445 GSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLD 504

Query: 367 EALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLV 413
           EA  L+ EM   G  PD             N   L A +L + +    F  D++    LV
Sbjct: 505 EANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLV 564

Query: 414 DGLCKSWRLRSAWELFKKL 432
           + LC     +S  ++  + 
Sbjct: 565 EMLCDDKLDQSVKQILSEF 583



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 39/211 (18%)

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           P  V ++ L+       +      L   ++S G  PD  + N LINS+  + +   A S+
Sbjct: 65  PSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRPGFAFSV 124

Query: 372 YGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
             +++ +G++PD +                       F  L+ GLC   ++  A  LF K
Sbjct: 125 LAKILKLGLQPDTA----------------------TFTTLIRGLCVEGKIGDALHLFDK 162

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKP 491
           +   G +PNVVTY  +I GLC                 K+     AI LL  M +   +P
Sbjct: 163 MIGEGFQPNVVTYGTLINGLC-----------------KVGNTNAAIRLLRSMEQGNCQP 205

Query: 492 DEITVSILEELLNKDENCHECMNLLPSFLSR 522
           D +  + + + L KD    E  NL    + +
Sbjct: 206 DVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQ 236


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  268 bits (684), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 168/526 (31%), Positives = 259/526 (49%), Gaps = 90/526 (17%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+DAL  FN ++HM P P +  F  LL ++A  K+Y   + LS ++++ G+ P+  +LNI
Sbjct: 37  LDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNI 96

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N FC +  V  AF  L +IL+    PD  T   LIRGLC++GK  EA  LF K +   
Sbjct: 97  LINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEG 156

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
            +PNV+                               P+V+ Y SIID LCKD  V +  
Sbjct: 157 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAF 216

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE-------------------------DAK 251
            LF  M G+GI PD F Y SL+   C    W+                         DA 
Sbjct: 217 NLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDAL 276

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
                  E H E V+   + GV   PDV++Y ++++  C    +D+A ++F  M  +G  
Sbjct: 277 CKEGKVTEAH-EIVDMMIQRGV--EPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFA 333

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           PDV+ Y++LI+GYC + +ID A  LF  +  +  IPDT +YNTL++    + ++++A++L
Sbjct: 334 PDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIAL 393

Query: 372 YGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
           + EM++ G  PD             N  + EA  L + +  +    D+ V+N ++DG+C+
Sbjct: 394 FHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCR 453

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE--------- 469
           +  L +A +LF  L   G  P+V TY +MI GLC  G + +A  L  +M+          
Sbjct: 454 AGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCT 513

Query: 470 ---------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
                    +  E L+AI+LL +M  R    D  T ++L E+L+ D
Sbjct: 514 YNTIARGFLQNNETLRAIQLLEEMLARGFSADVSTTTLLVEMLSDD 559


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score =  267 bits (683), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 163/536 (30%), Positives = 261/536 (48%), Gaps = 110/536 (20%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A+  FN M+ MQP P    FN LL ++A  K++   + LS ++++ G+ P+  +L+I
Sbjct: 42  IDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHI 101

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N FC +  V  AF  L +IL+    PD  T   LIRG+ ++GK  EA  LF K +   
Sbjct: 102 LINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEG 161

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
            RP+V+                               PNV  Y +IID LCKD  V +  
Sbjct: 162 FRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAF 221

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            LF +M  +GI PD F YNSLI   C    W+           L  E V+          
Sbjct: 222 NLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVA-------TLLNEMVDSK------IM 268

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PDV+S+ +++++LCK+  V +A ++   M  RG+ P+VV Y++L+DG+CL+  +D+A K+
Sbjct: 269 PDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKV 328

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------- 383
           F ++  +GC+P+  SYNTLIN Y KI+++++A+ L+GEM    + PD             
Sbjct: 329 FDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCH 388

Query: 384 -----------------------------------NSCILEAAELFRTLHNTKFELDLTV 408
                                              N  + EA  L + +  +  + D+ V
Sbjct: 389 VERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQV 448

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
            N  +DG+C++  L +A +LF  L   G +P+V TY++MI GLC  G +++A  L  +M+
Sbjct: 449 NNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMD 508

Query: 469 E------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
           E                  +  E  +AI+LL +M  R    D  T+++  ++L+ D
Sbjct: 509 ENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKMLSDD 564



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 163/343 (47%), Gaps = 26/343 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++ +A   F+ M+    +P + ++NSL+ AL     + +   L   +    ++PD VS N
Sbjct: 216 QVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFN 275

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            +++  CK   V++A   + +++++   P+VVT   L+ G C+  +  EA  +F   V  
Sbjct: 276 TVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCK 335

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C    +PNVI Y ++I+G CK   ++K   LF +M  + + PD   Y++LI   C    
Sbjct: 336 GC----MPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVER 391

Query: 247 WEDAKG--NTSAALELHEEFVNGNGELGVICH--------------------PDVLSYCS 284
            +DA    +   A       V     L  +C                     PD+     
Sbjct: 392 LQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNI 451

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
            I+ +C+   ++ A++LF ++ S+G+ PDV  YS +I+G C  G +D+A KLF  ++  G
Sbjct: 452 AIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENG 511

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
           C  +   YNT+   + +  +   A+ L  EM++ G   D S +
Sbjct: 512 CTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTM 554


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  265 bits (676), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 164/536 (30%), Positives = 257/536 (47%), Gaps = 110/536 (20%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+DAL  FN M+HM P P    F  LL ++A  K+Y   + LS ++++ G+ PD  +LNI
Sbjct: 131 LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNI 190

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N FC +  +  AF  L ++L+    PD  T   LIRGLC++GK  EA  LF K +   
Sbjct: 191 LINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEG 250

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
            +P+V+                               PNVI Y +IID LCKD  V +  
Sbjct: 251 FQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAF 310

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            LF +M  +GI PD F YNSLI   C    W+           L  E VN          
Sbjct: 311 NLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVT-------TLLNEMVNSK------IM 357

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+V+ + +++++LCK+ ++  A ++   M  RG+ PDVV Y++L+DG+CL   +D+A K+
Sbjct: 358 PNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKV 417

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIE--------------------------------- 363
           F ++  +GC+P+  SYN LIN Y +I+                                 
Sbjct: 418 FDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCH 477

Query: 364 --KVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTV 408
             +++ A++L+ EM++ G  PD             N  + EA  L + +  +  + D+ V
Sbjct: 478 VGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILV 537

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +N  +DG+C++  L +A +LF  L   G +P+V TY +MI GLC  G +++A  L   M+
Sbjct: 538 YNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMD 597

Query: 469 E------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
           E                  +  E   A +LL +M       D  T +++ E+L+ D
Sbjct: 598 ENGCSRDGCIYNTIIRGFLRSNETFGATQLLQEMLAEGFSADVSTTTLIVEMLSDD 653



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/448 (23%), Positives = 194/448 (43%), Gaps = 66/448 (14%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E ++ +AL  F+  I     P + ++ +L+  L         I L   +      P+ ++
Sbjct: 233 EGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIA 292

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N +++  CK   V++AF     ++ K  SPD+ T   LI  LC   ++   + L  + V
Sbjct: 293 YNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMV 352

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
                  ++PNV+ +++++D LCK+G +     +   M  RG+ PD   Y +L+  +C  
Sbjct: 353 ----NSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCL- 407

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                 +     A+++ +  V+        C P+V SY  +IN  C+   +DKA  L   
Sbjct: 408 ------RSEMDEAVKVFDTMVHKG------CVPNVRSYNILINGYCQIQRMDKAMGLLEQ 455

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M  +G+I D V Y++LI G C +GR+  A  LF  + + G IPD  +Y  L++   K   
Sbjct: 456 MSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHH 515

Query: 365 VEEAL-----------------------------------SLYGEMISMGVRPD------ 383
           + EA+                                    L+  + S G++PD      
Sbjct: 516 LAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNI 575

Query: 384 -------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
                     + EA +LFR +       D  ++N ++ G  +S     A +L +++   G
Sbjct: 576 MIHGLCKRGLLDEANKLFRKMDENGCSRDGCIYNTIIRGFLRSNETFGATQLLQEMLAEG 635

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLL 464
              +V T T +I  +  + G++++++ L
Sbjct: 636 FSADVST-TTLIVEMLSDDGLDQSFERL 662


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score =  258 bits (658), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 158/505 (31%), Positives = 252/505 (49%), Gaps = 83/505 (16%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L++AL  FN M+H QP P    FN LL ++A  K++   + LS ++++ G+ PD  +L I
Sbjct: 26  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAI 85

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++N  C +  V  AF AL +IL+    PD  T   LIRGLC++GK  EA  LF K +   
Sbjct: 86  VINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIG-- 143

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
                 PNV+ Y ++I+GLCKD  V +   +F +M  +GI P+   YNSLI   C    W
Sbjct: 144 --EGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEW 201

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           +           L  E V+          PDV +  +++++LCK+ +V +A ++   M  
Sbjct: 202 KHVT-------TLMNEMVDSK------IMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIH 248

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV-- 365
           RG+ P+VV Y++L+DG+CL   +D A K+F ++  + C+ +  SYNTLIN Y KI+ V  
Sbjct: 249 RGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDK 308

Query: 366 ---------------------------------EEALSLYGEMISMGVRPD--------- 383
                                            ++A+SL+ EM++ G  PD         
Sbjct: 309 AMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSD 368

Query: 384 ----NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
               N  + +A  L + +  + ++ D+ ++  ++DG+C++  L  A +LF  L   G +P
Sbjct: 369 YLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQP 428

Query: 440 NVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELL 481
           NV TY +MI GLC +G + +A  L  +M +                  +  E L+ IELL
Sbjct: 429 NVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELL 488

Query: 482 HKMAKRYVKPDEITVSILEELLNKD 506
            +M  R    D  T ++L  +L+ D
Sbjct: 489 EEMLARGFSVDVSTTTLLVGMLSDD 513



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 130/415 (31%), Positives = 218/415 (52%), Gaps = 43/415 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+DAL  FN M+HM P P    F  LL ++A  K+Y   + LS ++++ G+ PD  +LNI
Sbjct: 562 LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNI 621

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N FC +  +  AF  L ++L+  F PDVVT G L+ GLC          + TK ++  
Sbjct: 622 LINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLC---------KMITKGIS-- 670

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
                 P++  Y S+I  LC       V  L  +M    I P+  V+++++   C     
Sbjct: 671 ------PDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALC----- 719

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
              +G  + A ++ +  +    E      PDV++Y ++++  C    +D+A ++F  M  
Sbjct: 720 --KEGMIAIAHDVVDMMIKRGVE------PDVVTYTALMDGHCLRSEMDEAVKVFDTMVH 771

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           +G +P+V  Y+ LI+GYC + R+D A  L   +  +G I DT +YNTLI+    + +++ 
Sbjct: 772 KGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQH 831

Query: 368 ALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           A++L+ EM++ G  PD             N  + EA  L + +  +  + D+ V+N  +D
Sbjct: 832 AIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAID 891

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           G+C++  L +A +LF  L   G +P+V TY +MI GLC  G +++A  L   M+E
Sbjct: 892 GMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDE 946



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 103/394 (26%), Positives = 191/394 (48%), Gaps = 40/394 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++ +A   F+ MI    +P + ++NSL+  L     + +   L   +    ++PD  +LN
Sbjct: 165 QVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLN 224

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            +++  CK   V++A   +  ++ +   P+VVT   L+ G C++ +   A  +F   V  
Sbjct: 225 TVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHK 284

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           DC    + NVI Y ++I+G CK   V+K   LF +M  + + P+   YN+LI   C    
Sbjct: 285 DC----VANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGR 340

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            +D       A+ L  E V   G++     PD+++Y ++ + LCK+  +DKA  L   ++
Sbjct: 341 LQD-------AISLFHEMV-ARGQI-----PDLVTYRTLSDYLCKNRHLDKAMALLKAIE 387

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
                PD+ +Y++++DG C  G ++DAR LF ++ S+G  P+  +YN +I+   K   + 
Sbjct: 388 GSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLA 447

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           EA  L+ EM   G  P N C                      +N +  G  ++       
Sbjct: 448 EASKLFSEMNKNGCSP-NDC---------------------TYNLITRGFLRNNEALRTI 485

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
           EL +++   G   +V T T+++ G+  + G++++
Sbjct: 486 ELLEEMLARGFSVDVSTTTLLV-GMLSDDGLDQS 518



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 120/512 (23%), Positives = 215/512 (41%), Gaps = 93/512 (18%)

Query: 70  DALC----------FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           DALC            + MIH    P + ++N+L+     +      + + + +     +
Sbjct: 228 DALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCV 287

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
            + +S N L+N +CK+  V  A      + R+  +P+ VT   LI GLC  G+  +A  L
Sbjct: 288 ANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISL 347

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F + VA       IP+++ Y ++ D LCK+  ++K   L   ++G    PD  +Y +++ 
Sbjct: 348 FHEMVA----RGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILD 403

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C A   EDA+          + F N + + G+   P+V +Y  +I+ LCK  L+ +A 
Sbjct: 404 GMCRAGELEDAR----------DLFSNLSSK-GL--QPNVWTYNIMIHGLCKQGLLAEAS 450

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYC-----------------------------LMGRI 330
           +LF +M   G  P+   Y+ +  G+                              L+G +
Sbjct: 451 KLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGML 510

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYS------------------KIEKVEEALSLY 372
            D   L  S++   C P +SS  +     S                      +++ALS +
Sbjct: 511 SD-DGLDQSVKQILCKPSSSSRPSGTQMRSLPPLFLSSSHNSLHSRSPHFNTLDDALSSF 569

Query: 373 GEMISMGVRP---DNSCILEA---AELFRTLHNTKFEL-------DLTVFNCLVDGLCKS 419
             M+ M   P   D + +L +    + + T+ +   ++       D+   N L++  C  
Sbjct: 570 NRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHL 629

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC--IEGGIEK---AYDLLPDMEEKIREC 474
            RL  A+ +  KL + G +P+VVTY  ++ GLC  I  GI      Y+ L      + E 
Sbjct: 630 RRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCKMITKGISPDIFTYNSLIHALCNLCEW 689

Query: 475 LKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
                LL++M    + P+ +  S + + L K+
Sbjct: 690 KHVTTLLNEMVNSKIMPNVVVFSTVVDALCKE 721



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 145/321 (45%), Gaps = 53/321 (16%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           MI    +P + ++NSL+ AL     + +   L   +    ++P+ V  + +++  CK   
Sbjct: 664 MITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGM 723

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           ++ A   +  ++++   PDVVT   L+ G C++ +  EA  +F   V   C    +PNV 
Sbjct: 724 IAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGC----VPNVR 779

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            Y  +I+G C+   ++K   L   M  +G+  D   YN+LI   C         G    A
Sbjct: 780 SYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHV-------GRLQHA 832

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCK---------------------DVLV- 295
           + L  E V  +G++     PD+++Y  +++ LCK                     D+LV 
Sbjct: 833 IALFHEMV-ASGQI-----PDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVY 886

Query: 296 -------------DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
                        + A++LF ++ S+G+ PDV  Y+ +I G C  G +D+A KLF  ++ 
Sbjct: 887 NIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDE 946

Query: 343 EGCIPD-TSSYNTLINSYSKI 362
                + TSS N     Y KI
Sbjct: 947 NDIWSNSTSSRNQKSLIYQKI 967



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 103/244 (42%), Gaps = 52/244 (21%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E+++A+  F+ M+H                                    G +P+  S N
Sbjct: 758 EMDEAVKVFDTMVHK-----------------------------------GCVPNVRSYN 782

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           IL+N +C++  +  A   L ++  +    D VT   LI GLC  G+   A  LF + VA 
Sbjct: 783 ILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVA- 841

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                 IP+++ Y  ++D LCK+  + +  VL   ++G  +  D  VYN  I   C A  
Sbjct: 842 ---SGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRA-- 896

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G   AA +L     +   +      PDV +Y  +I+ LCK  L+D+A +LF  M 
Sbjct: 897 -----GELEAARDLFSNLSSKGLQ------PDVRTYNIMIHGLCKRGLLDEANKLFRKMD 945

Query: 307 SRGI 310
              I
Sbjct: 946 ENDI 949



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 30/187 (16%)

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCILEAAE---------LFR 395
           +SS+NT  +       ++EALS +  M+     P     N  +   A+         L R
Sbjct: 10  SSSHNTFHSKPLHFNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSR 69

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            + +     D+     +++ LC   R+  A+    K+ + G +P+  T+T +I GLC+EG
Sbjct: 70  QMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEG 129

Query: 456 GIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
            I                  +A+ L  KM     +P+ +T   L   L KD    E  N+
Sbjct: 130 KIG-----------------EALHLFDKMIGEGFQPNVVTYGTLINGLCKDRQVTEAFNI 172

Query: 516 LPSFLSR 522
               +++
Sbjct: 173 FSEMITK 179


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 168/537 (31%), Positives = 261/537 (48%), Gaps = 97/537 (18%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+DAL  FN ++HM P P +  F  LL ++A  K+Y   + LS ++++ G+ P+  +LNI
Sbjct: 46  LDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNI 105

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N FC +  V  AF  L +IL+    PD  T   LIRGLC++GK  EA  LF K +   
Sbjct: 106 LINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEG 165

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
            +PNV+                               P+V+ Y SIID LCKD  V +  
Sbjct: 166 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAF 225

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            LF  M G+GI PD F Y SL+   C    W+           L  + VN          
Sbjct: 226 NLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVT-------TLLNQMVNSK------IL 272

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PDV+ + +++++LCK+  V +A E+   M  RG+ PDVV Y++L+DG+CL   +D+A K+
Sbjct: 273 PDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKV 332

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKV------------------------------- 365
           F  +  +G  PD  SY TLIN Y KI K+                               
Sbjct: 333 FDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCH 392

Query: 366 ----EEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTV 408
               ++A++L+ EM++ G  PD             N  + EA  L + +  +    D+ V
Sbjct: 393 VGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQV 452

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +N ++DG+C++  L +A +LF  L   G  P+V TY +MI GLC  G + +A  L  +M+
Sbjct: 453 YNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMD 512

Query: 469 EKIRECLKAIELLHKMAKRYVKPDEI--TVSILEELLNKDENCHECMNLLPSFLSRN 523
               +C       + +A+ +++ +E    + +LEE+L +  +   C  L+ S LS +
Sbjct: 513 GN--DCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADSCF-LMLSVLSED 566


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  255 bits (651), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 156/490 (31%), Positives = 242/490 (49%), Gaps = 84/490 (17%)

Query: 59  ENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVN-FICLSERLNTIG 117
           +N  S    ++DAL +FN+M+H +P P +  FN LL A+   ++Y +  I LS+++   G
Sbjct: 93  QNDASSFRNIDDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAG 152

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           L PD  +L++L+NCF ++  V   F  L +I++      +VT   LI GLC  GKF +A 
Sbjct: 153 LSPDTYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAV 212

Query: 178 GLFTKFVAFDCRPNV-------------------------------IPNVICYASIIDGL 206
            LF   VA   +P+V                                P+V+ Y++IID L
Sbjct: 213 ELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSL 272

Query: 207 CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266
           CKD  VN+   +F  MK +GI P+ F YNSLI+  C    W +A    +  + L+     
Sbjct: 273 CKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLN----- 327

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
                     P+++++  +IN  CK+  V +A+ +   M   G+ P+VV YSSL++GY L
Sbjct: 328 --------IMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSL 379

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC 386
              + +ARKLF  + ++GC PD  SYN LIN Y K +++ EA  L+ EMI  G+ P    
Sbjct: 380 QAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTP---- 435

Query: 387 ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTV 446
                             D+  +N L+DGLC+  RLR A +LFK +   G  P++ TY++
Sbjct: 436 ------------------DIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSI 477

Query: 447 MICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
           ++ G C +G + KA+                  L   M   Y+KP+ +  +IL + + K 
Sbjct: 478 LLDGFCKQGYLAKAF-----------------RLFRAMQSTYLKPNMVMYNILIDAMCKS 520

Query: 507 ENCHECMNLL 516
            N  E   L 
Sbjct: 521 RNLKEARKLF 530



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 112/435 (25%), Positives = 198/435 (45%), Gaps = 66/435 (15%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +   A+  F+ M+     P + ++ +++  L      V    L  ++   G  PD V+ +
Sbjct: 207 KFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYS 266

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            +++  CK   V++A      +  K  SP++ T   LI+GLC   ++ EAS +  + ++ 
Sbjct: 267 TIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSL 326

Query: 187 DCRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKV 215
           +  PN++                               PNV+ Y+S+++G      V + 
Sbjct: 327 NIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEA 386

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
           R LF  M  +G  PD F YN LI  YC A    +AK       +L  E ++         
Sbjct: 387 RKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAK-------QLFNEMIHQG------L 433

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
            PD++SY ++I+ LC+   + +A +LF +M + G +PD+  YS L+DG+C  G +  A +
Sbjct: 434 TPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFR 493

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395
           LF +++S    P+   YN LI++  K   ++EA  L+ E+   G++P             
Sbjct: 494 LFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQP------------- 540

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
                    ++ ++  +++GLCK   L  A E F+ +   G  PN  +Y V+I G     
Sbjct: 541 ---------NVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHK 591

Query: 456 GIEKAYDLLPDMEEK 470
              +A  L+ +M EK
Sbjct: 592 DESRAVQLIGEMREK 606



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 167/349 (47%), Gaps = 46/349 (13%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            +N+AL  F+YM     +P + ++NSL+  L     +     +   + ++ ++P+ V+ +
Sbjct: 277 RVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFS 336

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +L+N FCK   V +A   L  +      P+VVT   L+ G  +Q +  EA  LF   +  
Sbjct: 337 LLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITK 396

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C+P+V      Y  +I+G CK   + + + LF +M  +G+ PD   YN+LI   C    
Sbjct: 397 GCKPDVFS----YNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGR 452

Query: 247 WEDAKGNTSAALELHEEFVN--GNGELGVIC----------------------------- 275
             +A          H+ F N   NG L  +C                             
Sbjct: 453 LREA----------HDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTY 502

Query: 276 -HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
             P+++ Y  +I+++CK   + +A++LF ++  +G+ P+V +Y+++I+G C  G +D+A 
Sbjct: 503 LKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEAL 562

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           + F ++E +GC P+  SYN +I  + + +    A+ L GEM   G   D
Sbjct: 563 EAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMREKGFVAD 611



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 134/274 (48%), Gaps = 17/274 (6%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           M  M   P + +++SL+   + +   V    L + + T G  PD  S NIL+N +CK   
Sbjct: 358 MTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKR 417

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           + +A      ++ +  +PD+V+   LI GLC  G+  EA  LF   +        +P++ 
Sbjct: 418 IGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLT----NGNLPDLC 473

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            Y+ ++DG CK G++ K   LF  M+   + P+  +YN LI   C + N ++A+   S  
Sbjct: 474 TYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFS-- 531

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
               E FV G         P+V  Y +IIN LCK+ L+D+A E F +M+  G  P+   Y
Sbjct: 532 ----ELFVQG-------LQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSY 580

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
           + +I G+        A +L   +  +G + D ++
Sbjct: 581 NVIIRGFLQHKDESRAVQLIGEMREKGFVADVAT 614


>gi|296087921|emb|CBI35204.3| unnamed protein product [Vitis vinifera]
          Length = 543

 Score =  255 bits (651), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 153/473 (32%), Positives = 252/473 (53%), Gaps = 51/473 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A+  FN M+ MQP P    FN LL ++A  K++   + LS ++++ G+ P+  +L+I
Sbjct: 42  IDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHI 101

Query: 128 LMNCFCKMI--GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           L+N FC +    + +A     +++ + F PDVVT G LI GLC  G  + A  L    V 
Sbjct: 102 LINSFCHLNRGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQ 161

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
            +C+PNV      Y +IID LCKD  V +   LF +M  +GI PD F YNSLI   C   
Sbjct: 162 KNCQPNVFA----YNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLC 217

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
            W+           L  E V+          PDV+S+ +++++LCK+  V +A ++   M
Sbjct: 218 EWKHVA-------TLLNEMVDSK------IMPDVVSFNTVVDALCKEGKVTEAHDVVDKM 264

Query: 306 KSRG-IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
             RG  +P+V+ Y++LI+GYC + RID A  LF  +  +  IPDT +Y+TLI+    +E+
Sbjct: 265 IQRGGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVER 324

Query: 365 VEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNC 411
           +++A++L+ EM++    P+             N  + EA  L + +  +  + D+ V N 
Sbjct: 325 LQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNI 384

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE-- 469
            +DG+C++  L +A +LF  L   G +P+V TY++MI GLC  G +++A  L  +M+E  
Sbjct: 385 AIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENG 444

Query: 470 ----------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
                           +  E  +AI+LL +M  R    D  T+++  ++L+ D
Sbjct: 445 CTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKMLSDD 497


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score =  254 bits (650), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 160/536 (29%), Positives = 257/536 (47%), Gaps = 110/536 (20%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L++AL  FN M+H QP P    FN LL ++A  K++   + LS ++++ G+ PD  +L I
Sbjct: 51  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAI 110

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++N  C +  V  AF AL +IL+    PD  T   LIRGLC++GK  EA  LF K +   
Sbjct: 111 VINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEG 170

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
            +PNV+                               PNV+ ++++ID LCKD  V +  
Sbjct: 171 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAF 230

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            +F +M  +GI P+   YNSLI   C    W+           L  E V+          
Sbjct: 231 NIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVT-------TLMNEMVDSK------IM 277

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PDV +  +++++LCK+ +V +A ++   M  RG+ P+VV Y++L+DG+CL   +D A K+
Sbjct: 278 PDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKV 337

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKV------------------------------- 365
           F ++  + C+ +  SYNTLIN Y KI+ V                               
Sbjct: 338 FDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCH 397

Query: 366 ----EEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTV 408
               ++A+SL+ EM++ G  PD             N  + +A  L + +  + ++ D+ +
Sbjct: 398 VGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQI 457

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +  ++DG+C++  L  A +LF  L   G +PNV TY +MI GLC +G + +A  L  +M 
Sbjct: 458 YTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMN 517

Query: 469 E------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
           +                  +  E L+ IELL +M  R    D  T ++L  +L+ D
Sbjct: 518 KNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDD 573



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/394 (26%), Positives = 191/394 (48%), Gaps = 40/394 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++ +A   F+ MI    +P + ++NSL+  L     + +   L   +    ++PD  +LN
Sbjct: 225 QVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLN 284

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            +++  CK   V++A   +  ++ +   P+VVT   L+ G C++ +   A  +F   V  
Sbjct: 285 TVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHK 344

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           DC    + NVI Y ++I+G CK   V+K   LF +M  + + P+   YN+LI   C    
Sbjct: 345 DC----VANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGR 400

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            +DA       + L  E V   G++     PD+++Y ++ + LCK+  +DKA  L   ++
Sbjct: 401 LQDA-------ISLFHEMV-ARGQI-----PDLVTYRTLSDYLCKNRHLDKAMALLKAIE 447

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
                PD+ +Y++++DG C  G ++DAR LF ++ S+G  P+  +YN +I+   K   + 
Sbjct: 448 GSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLA 507

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           EA  L+ EM   G  P N C                      +N +  G  ++       
Sbjct: 508 EASKLFSEMNKNGCSP-NDC---------------------TYNLITRGFLRNNEALRTI 545

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
           EL +++   G   +V T T+++ G+  + G++++
Sbjct: 546 ELLEEMLARGFSVDVSTTTLLV-GMLSDDGLDQS 578


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score =  254 bits (649), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 160/536 (29%), Positives = 257/536 (47%), Gaps = 110/536 (20%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L++AL  FN M+H QP P    FN LL ++A  K++   + LS ++++ G+ PD  +L I
Sbjct: 51  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAI 110

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++N  C +  V  AF AL +IL+    PD  T   LIRGLC++GK  EA  LF K +   
Sbjct: 111 VINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEG 170

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
            +PNV+                               PNV+ ++++ID LCKD  V +  
Sbjct: 171 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAF 230

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            +F +M  +GI P+   YNSLI   C    W+           L  E V+          
Sbjct: 231 NIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVT-------TLMNEMVDSK------IM 277

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PDV +  +++++LCK+ +V +A ++   M  RG+ P+VV Y++L+DG+CL   +D A K+
Sbjct: 278 PDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKV 337

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKV------------------------------- 365
           F ++  + C+ +  SYNTLIN Y KI+ V                               
Sbjct: 338 FDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCH 397

Query: 366 ----EEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTV 408
               ++A+SL+ EM++ G  PD             N  + +A  L + +  + ++ D+ +
Sbjct: 398 VGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQI 457

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +  ++DG+C++  L  A +LF  L   G +PNV TY +MI GLC +G + +A  L  +M 
Sbjct: 458 YTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMN 517

Query: 469 E------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
           +                  +  E L+ IELL +M  R    D  T ++L  +L+ D
Sbjct: 518 KNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDD 573



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/394 (26%), Positives = 191/394 (48%), Gaps = 40/394 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++ +A   F+ MI    +P + ++NSL+  L     + +   L   +    ++PD  +LN
Sbjct: 225 QVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLN 284

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            +++  CK   V++A   +  ++ +   P+VVT   L+ G C++ +   A  +F   V  
Sbjct: 285 TVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHK 344

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           DC    + NVI Y ++I+G CK   V+K   LF +M  + + P+   YN+LI   C    
Sbjct: 345 DC----VANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGR 400

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            +DA       + L  E V   G++     PD+++Y ++ + LCK+  +DKA  L   ++
Sbjct: 401 LQDA-------ISLFHEMV-ARGQI-----PDLVTYRTLSDYLCKNRHLDKAMALLKAIE 447

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
                PD+ +Y++++DG C  G ++DAR LF ++ S+G  P+  +YN +I+   K   + 
Sbjct: 448 GSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLA 507

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           EA  L+ EM   G  P N C                      +N +  G  ++       
Sbjct: 508 EASKLFSEMNKNGCSP-NDC---------------------TYNLITRGFLRNNEALRTI 545

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
           EL +++   G   +V T T+++ G+  + G++++
Sbjct: 546 ELLEEMLARGFSVDVSTTTLLV-GMLSDDGLDQS 578


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score =  254 bits (649), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 161/532 (30%), Positives = 265/532 (49%), Gaps = 85/532 (15%)

Query: 60  NSKSGEVE-LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGL 118
           +SKS  V  ++DAL  FN M+ M+P P +  F+ LL ++   K+Y   + L +++++ G+
Sbjct: 26  HSKSLNVNTIDDALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGI 85

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
             +  +LNIL+N FC +  +  AF  LG IL+  + P   T   LIRGLC++GK  EA  
Sbjct: 86  PHNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQ 145

Query: 179 LFTKFVAFDCRPNVI-------------------------------PNVICYASIIDGLC 207
           LF K      +P+V+                               P V+ Y++IID LC
Sbjct: 146 LFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLC 205

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL--ELHEEFV 265
           KD  + +   LF DM  +GI P+ F Y+SLI   C   +W++A     A +  ++  + +
Sbjct: 206 KDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQL 265

Query: 266 NGNGELGVICH--------------------PDVLSYCSIINSLCKDVLVDKAKELFLDM 305
             N  +  +C                     PDV++Y S+++  C    + K   +F  M
Sbjct: 266 TFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTM 325

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
             +G +P V+ Y++LI+GYC +  +D A  LF  +  +G IPDT +YNTLI+    + ++
Sbjct: 326 VRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRL 385

Query: 366 EEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCL 412
            +A++L+ EM+  G  PD             N  + EA  L + +  T  + D+ +++ +
Sbjct: 386 RDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIV 445

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE--- 469
           +DG+C++  L +A +LF KL   G  P+V TYT+MI GLC +G + +A  L  +M+E   
Sbjct: 446 MDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGC 505

Query: 470 ---------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
                          +  E L+AI+L  +M  R    D  T ++L E+L+ D
Sbjct: 506 SPNACTYNLITRGFLRNNETLRAIQLFQEMLSRGFSIDVSTTTLLVEMLSDD 557



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 79/194 (40%), Gaps = 39/194 (20%)

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE 389
           IDDA  LF  +      P    ++ L+ S ++++     LSLY +M S G+ P N+  L 
Sbjct: 35  IDDALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGI-PHNTYTL- 92

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
                               N L++  C   RL  A+ +   + + G +P+  T+T +I 
Sbjct: 93  --------------------NILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIR 132

Query: 450 GLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENC 509
           GLC+EG I +A                 ++L  KM     +PD +T   L   L K  N 
Sbjct: 133 GLCVEGKIGEA-----------------LQLFDKMTGEGFQPDVLTYGTLINGLCKVGNT 175

Query: 510 HECMNLLPSFLSRN 523
              +  L S   RN
Sbjct: 176 STAIRFLRSMEQRN 189


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 159/482 (32%), Positives = 242/482 (50%), Gaps = 93/482 (19%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAG-KKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++DAL  FN+M+H +P P +  F  LL A+    +YY   I L++++   GL P+  +L+
Sbjct: 78  IDDALASFNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTLS 137

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           IL+NCF  +  V  AF  L +I++    P +VT   LI  LC  GKF +A  LF   VA 
Sbjct: 138 ILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVAR 197

Query: 187 DCRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKV 215
            CRP+V                                PNV+ Y++IID   KD  VN+ 
Sbjct: 198 GCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEA 257

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
             +F  MK +GI PD F YNSLI+  C    W++A              +N    L ++ 
Sbjct: 258 LDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASA-----------LLNEMRSLNIM- 305

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
            PD++++  +++++CK+  V +A+ +   M   G+ PDVV YSSL+ GY L   + +ARK
Sbjct: 306 -PDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARK 364

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN----------- 384
           LF ++ ++GC PD  SYN LIN Y K+++++EA  L+ EMI  G+ P+N           
Sbjct: 365 LFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLC 424

Query: 385 ---------------------------SCILE----------AAELFRTLHNTKFELDLT 407
                                      S +L+          A  LFR + +T  + +L 
Sbjct: 425 QLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLV 484

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           ++N L+D +CKS  LR A +LF +L   G +PN   YT +I GLC EG +++A +   +M
Sbjct: 485 MYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNM 544

Query: 468 EE 469
           EE
Sbjct: 545 EE 546



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 165/355 (46%), Gaps = 44/355 (12%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           +S   +  +N+AL  F+YM     +P + ++NSL+  L     +     L   + ++ ++
Sbjct: 246 DSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIM 305

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V+ N+L++  CK   VS+A   L  +      PDVVT   L+ G  ++ +  EA  L
Sbjct: 306 PDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKL 365

Query: 180 FTKFVAFDCRPNVI-------------------------------PNVICYASIIDGLCK 208
           F   +   C+P+V                                PN + Y ++I GLC+
Sbjct: 366 FDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQ 425

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
            G + + R LF +M   G  P+ F Y+ L+  +C        +G    A  L     +  
Sbjct: 426 LGSLREARNLFKNMHTNGNLPNLFTYSILLDGFC-------KQGYFGKAFRLFRAMQS-- 476

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                   P+++ Y  +I+++CK   +  A++LF ++  +G+ P+  +Y+++I+G C  G
Sbjct: 477 ----TYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEG 532

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            +D+A + F ++E +GC PD  SYN +I  +   +    A+ L GEM   G   D
Sbjct: 533 LLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKGFIAD 587



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 134/287 (46%), Gaps = 17/287 (5%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E ++++A      M  M   P + +++SL+   + +   V    L + + T G  PD  S
Sbjct: 321 EGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFS 380

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            NIL+N +CK+  + +A      ++ +  +P+ V+   LI GLC  G   EA  LF    
Sbjct: 381 YNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMH 440

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
                   +PN+  Y+ ++DG CK G+  K   LF  M+     P+  +YN LI   C +
Sbjct: 441 T----NGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKS 496

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
            N  DA+   S      E FV G         P+   Y +IIN LCK+ L+D+A E F +
Sbjct: 497 GNLRDARKLFS------ELFVKG-------LQPNAQIYTTIINGLCKEGLLDEALEAFRN 543

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
           M+  G  PD + Y+ +I G+        A +L   +  +G I D  +
Sbjct: 544 MEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKGFIADVGT 590


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 161/519 (31%), Positives = 263/519 (50%), Gaps = 78/519 (15%)

Query: 55  KYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAG-KKYYVNFICLSERL 113
           K+ ++++ S    ++DAL  FN+M+H +P P +  FN LL A+   ++YY   I LS+++
Sbjct: 58  KHKNDDASSSFRNIDDALASFNHMLHRKPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQM 117

Query: 114 NTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF 173
              GL P+  +LNIL+NCFC M  V   F  L ++++    P ++T   LI GLC  G+F
Sbjct: 118 ELAGLSPNTCTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEF 177

Query: 174 TEASGLFTKFVAFDCRPNVI-------------------------------PNVICYASI 202
            +A  LF   VA  C+P+V                                P+V+ Y+++
Sbjct: 178 AQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTL 237

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
           ID LCKD  VN+   +F  MK +GI P    Y SLI+  C    W++A            
Sbjct: 238 IDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASA---------- 287

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
             +N    L ++  PD++++  +I+  CK+  V +A+ +   M   G+ P+V+ Y+SL+ 
Sbjct: 288 -MLNEMTSLNIM--PDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMH 344

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
           GY L   + +ARKLF  + + GC PD  SY+ LIN Y  +++++EA  L+ EMI  G+ P
Sbjct: 345 GYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTP 404

Query: 383 DNS---------CIL----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
           +           C L    EA ELF+ +H   +  DL  ++ L++G CK   L  A+ LF
Sbjct: 405 NTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLF 464

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKA---------YDLLPDMEEKI-------RE 473
           + +     +PN+V YT++I  +C  G +  A         + L PD++          +E
Sbjct: 465 RAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKE 524

Query: 474 CL--KAIELLHKMAKRYVKPDEITVSILEE--LLNKDEN 508
            L  +A+E   KM +    P+E + +++    L +KDE+
Sbjct: 525 GLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDES 563



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 159/347 (45%), Gaps = 44/347 (12%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +N+AL  F+YM     +P + S+ SL+  L     +     +   + ++ ++PD V+ ++
Sbjct: 247 VNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSL 306

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++ FCK   V +A   L  +      P+V+T   L+ G  +Q +  EA  LF   +   
Sbjct: 307 LIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRG 366

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
           C+P+V                                PN + Y ++I   C+ G + + R
Sbjct: 367 CKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREAR 426

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            LF DM   G  PD   Y+ L+  +C        +G    A  L           G    
Sbjct: 427 ELFKDMHTNGYLPDLCTYSVLLEGFC-------KQGYLGKAFRLFRAMQ------GTYLK 473

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+++ Y  +I+S+CK   ++ A++LF ++   G+ PDV +Y+++I+G C  G +D+A + 
Sbjct: 474 PNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEA 533

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           F  +E +GC P+  SYN +I  + + +    A+ L GEM   G   D
Sbjct: 534 FRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKGFVAD 580



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 98/223 (43%), Gaps = 40/223 (17%)

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR-KLFVSIESEGCIPDTSSYN 353
           +D A   F  M  R  +P ++ ++ L+     M +  DA   L   +E  G  P+T + N
Sbjct: 71  IDDALASFNHMLHRKPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTLN 130

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLV 413
            LIN +  ++ V+   S+  ++I +G++P                       +  F  L+
Sbjct: 131 ILINCFCLMQHVDLGFSVLAKVIKLGLQPT----------------------IITFTTLI 168

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
           +GLCK+     A ELF  +   G +P+V TYT +I GLC                 K+ E
Sbjct: 169 NGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLC-----------------KMGE 211

Query: 474 CLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
              A  L+ KM +   +PD +T S L + L KD   +E +++ 
Sbjct: 212 TAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIF 254


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 157/505 (31%), Positives = 253/505 (50%), Gaps = 83/505 (16%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+DAL  F+ M+HM P P +  F  LL ++A  K+Y   + LS+++++ G+ PD  +L I
Sbjct: 37  LDDALSSFHRMLHMHPPPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTI 96

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++N FC +  V  A   L +IL+    PD  T   L+RGLC+ GK  EA  +F K V   
Sbjct: 97  VINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVG-- 154

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
                 PNV+ Y ++++GLCKD  + +   LF +M  +GI PD F YNSLI   C    W
Sbjct: 155 --EGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEW 212

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           +           L  E V           P+V+S   ++++LCK+  V +A ++   M  
Sbjct: 213 KHVT-------TLLNEMVKSK------IMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQ 259

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV-- 365
            G+ PDVV Y++L+DG+CL   +D+A K+F  +   GC+ +  SYNTLIN Y KI+++  
Sbjct: 260 GGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDK 319

Query: 366 ---------------------------------EEALSLYGEMISMGVRPD--------- 383
                                            ++A++L+ EM++ G  P+         
Sbjct: 320 AMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLD 379

Query: 384 ----NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
               N  + EA  L + +  +  + D+ V+N  +DG+C++  L +A +LF  L   G +P
Sbjct: 380 YLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQP 439

Query: 440 NVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-----------IRECL-------KAIELL 481
           +V T+ +MI GLC  G +++A  L  +M+E            I + L       +AI+LL
Sbjct: 440 DVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLL 499

Query: 482 HKMAKRYVKPDEITVSILEELLNKD 506
            +M  R    D  T ++L ++L+ D
Sbjct: 500 EEMLARGFSADVSTTALLVKMLSDD 524



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 164/341 (48%), Gaps = 26/341 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L +AL  F+ MI    +P + ++NSL+ AL     + +   L   +    ++P+ VSLN
Sbjct: 176 QLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLN 235

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           I+++  CK   V++A   +  +++    PDVVT   L+ G C++ +  EA  +F   V  
Sbjct: 236 IVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRN 295

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C    + NV+ Y ++I+G CK   ++K   LF +M  + + P+   Y++LI   C    
Sbjct: 296 GC----VCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGR 351

Query: 247 WEDAKG--NTSAALELHEEFVNGNGELGVICH--------------------PDVLSYCS 284
            +DA    N   A       V  +  L  +C                     PDV  Y  
Sbjct: 352 LQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNI 411

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
            I+ +C+   ++ A++LF ++  RG+ PDV  ++ +I G C  G +D+A KLF  ++  G
Sbjct: 412 AIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENG 471

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
           C+ +  +YNT+     +  K   A+ L  EM++ G   D S
Sbjct: 472 CLRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARGFSADVS 512



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 74/193 (38%), Gaps = 39/193 (20%)

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE 389
           +DDA   F  +      P    +  L+ S +K++     LSL  +M S G+ PD      
Sbjct: 37  LDDALSSFHRMLHMHPPPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPD------ 90

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
                           +     +++  C   R+  A  +  K+ + G +P+  T+T ++ 
Sbjct: 91  ----------------VYTLTIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVR 134

Query: 450 GLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENC 509
           GLC+ G I +A D+                   KM     +P+ +T   L   L KD   
Sbjct: 135 GLCVVGKIGEALDVFD-----------------KMVGEGFQPNVVTYGTLMNGLCKDRQL 177

Query: 510 HECMNLLPSFLSR 522
            E +NL    +++
Sbjct: 178 TEALNLFSEMIAK 190


>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
          Length = 671

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 160/491 (32%), Positives = 248/491 (50%), Gaps = 72/491 (14%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A+  FN M+ MQP P    FN LL ++A  K++   + LS ++++ G+ P+  +L+I
Sbjct: 42  IDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHI 101

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N FC +  V  AF  L +IL+    PD  T   LIRG+C++GK  EA  LF K +   
Sbjct: 102 LINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEG 161

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
            RP+V+                               PNV  Y +IID LCKD  V +  
Sbjct: 162 FRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAF 221

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            LF +M  +GI PD F YNSLI   C    W+           L  E V+          
Sbjct: 222 NLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVA-------TLLNEMVDSK------IM 268

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PDV+S+ +++++LCK+  V +A ++   M  RG+ P+VV Y++L+DG+CL+  +D+A K+
Sbjct: 269 PDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKV 328

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC----ILEAAE 392
           F ++  +GC+P+  SYNTLIN Y KI+++++A+     M       D  C    + EA +
Sbjct: 329 FDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLM-------DXXCCYLNMDEAVK 381

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
           +F T+       ++  +N L++G CK  R+  A  LF ++ R    P+ VTY+ +I GLC
Sbjct: 382 VFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLC 441

Query: 453 IEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHEC 512
               +E+  D              AI L H+M      P+ +T  IL + L K+    E 
Sbjct: 442 ---HVERLQD--------------AIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEA 484

Query: 513 MNLLPSFLSRN 523
           M LL +    N
Sbjct: 485 MALLKAIEGSN 495



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/440 (23%), Positives = 188/440 (42%), Gaps = 60/440 (13%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           A+     M+     P + ++N+++ +L   +       L   + T G+ PD  + N L++
Sbjct: 185 AIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIH 244

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
             C +         L  ++     PDVV+   ++  LC +GK TEA  +  K +    + 
Sbjct: 245 ALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMI----QR 300

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
            V PNV+ Y +++DG C    +++   +F  M  +G  P+   YN+LI  YC  +   D 
Sbjct: 301 GVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYC-KIQRIDK 359

Query: 251 KGNTSAALELHEEFVNGNGELGVI-------CHPDVLSYCSIINSLCKDVLVDKAKELFL 303
             + +  ++    ++N +  + V        C P+V+SY ++IN  CK   +DKA  LF 
Sbjct: 360 AIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFG 419

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF-------------------------- 337
           +M  + +IPD V YS+LI G C + R+ DA  LF                          
Sbjct: 420 EMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNR 479

Query: 338 ---------VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----- 383
                     +IE     PD    N  I+   +  ++E A  L+  + S G++PD     
Sbjct: 480 YLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYS 539

Query: 384 --------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
                      + EA++LFR +      L+  ++N +  G  ++     A +L +++   
Sbjct: 540 IMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVAR 599

Query: 436 GPEPNVVTYTVMICGLCIEG 455
           G   +  T T+ +  L  +G
Sbjct: 600 GFSADASTMTLFVKMLSDDG 619



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 95/393 (24%), Positives = 166/393 (42%), Gaps = 72/393 (18%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++ +A   F+ M+    +P + ++NSL+ AL     + +   L   +    ++PD VS N
Sbjct: 216 QVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFN 275

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            +++  CK   V++A   + +++++   P+VVT   L+ G C+  +  EA  +F   V  
Sbjct: 276 TVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCK 335

Query: 187 DCRPNVI--------------------------------------------------PNV 196
            C PNVI                                                  PNV
Sbjct: 336 GCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNV 395

Query: 197 ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG--NT 254
           I Y ++I+G CK   ++K   LF +M  + + PD   Y++LI   C     +DA    + 
Sbjct: 396 ISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHE 455

Query: 255 SAALELHEEFVNGNGELGVICH--------------------PDVLSYCSIINSLCKDVL 294
             A       V     L  +C                     PD+      I+ +C+   
Sbjct: 456 MVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGE 515

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           ++ A++LF ++ S+G+ PDV  YS +I+G C  G +D+A KLF  ++  GC  +   YNT
Sbjct: 516 LEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNT 575

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
           +   + +  +   A+ L  EM++ G   D S +
Sbjct: 576 ITRGFLRNNETSRAIQLLQEMVARGFSADASTM 608


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 162/519 (31%), Positives = 259/519 (49%), Gaps = 79/519 (15%)

Query: 56  YLSENSKSGEVE-LNDALCFFNYMIHMQPTPFMPSFNSLLGALAG-KKYYVNFICLSERL 113
           Y  +N  S     ++DAL  FN+M+H +P P +  F  LL A+    +YY   I LS+++
Sbjct: 60  YQHKNDASSSFRNIDDALASFNHMLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQM 119

Query: 114 NTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF 173
             +GL P+  +L+I MNCFC++  V   F  L ++++    P +VT   LI GLC  G+F
Sbjct: 120 ELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEF 179

Query: 174 TEASGLFTKFVAFDCRPNVI-------------------------------PNVICYASI 202
            +A  LF   VA  C+P+V                                PN++ Y+++
Sbjct: 180 AQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTL 239

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
           ID LC+D  VN+   +F  MK +GI PD F Y SLI+  C    W++A            
Sbjct: 240 IDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASA---------- 289

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
             +N    L ++  PD++++  ++++ CK+  V +A  +   M   G+ P+VV YSSL+ 
Sbjct: 290 -LLNEMTSLNIM--PDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMY 346

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
           GY L   + +ARKLF  + ++GC P+  SYN LIN Y K ++++EA+ L+ EMI  G+ P
Sbjct: 347 GYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTP 406

Query: 383 DNS---------CIL----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
           +N          C L    EA +LFR +       DL  ++ L+DG CK   L  A+ LF
Sbjct: 407 NNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLF 466

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK----------------IRE 473
           + +     +PN+V YT+++  +C  G  + A  L  ++  +                 +E
Sbjct: 467 RAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKE 526

Query: 474 CL--KAIELLHKMAKRYVKPDEITVSILEE--LLNKDEN 508
            L  +A+E    M      PDEI+ +++    L +KDE+
Sbjct: 527 GLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQHKDES 565



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 167/342 (48%), Gaps = 32/342 (9%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +N+AL  F+YM     +P + ++ SL+  L     +     L   + ++ ++PD V+ N+
Sbjct: 249 VNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNV 308

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++ FCK   VS+A   L  +      P+VVT   L+ G  +     EA  LF   +   
Sbjct: 309 LVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKG 368

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C+PN+      Y  +I+G CK   +++   LF +M  +G+ P+   YN+LI  +C     
Sbjct: 369 CKPNIFS----YNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKL 424

Query: 248 EDAK---------GNTSAALELHEEFVNG---NGELG-----------VICHPDVLSYCS 284
            +A+         GN    L  +   ++G    G LG               P+++ Y  
Sbjct: 425 REAQDLFRNMCTNGNL-PDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTI 483

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           +++++CK      A++LF ++  +G+ P V +Y+++I+G C  G +D+A + F ++E++G
Sbjct: 484 LVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADG 543

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG----VRP 382
           C PD  SYN +I    + +    AL L GEM   G    VRP
Sbjct: 544 CPPDEISYNVIIRGLLQHKDESRALLLVGEMRDRGFIADVRP 585


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 157/481 (32%), Positives = 234/481 (48%), Gaps = 84/481 (17%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAG-KKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++DAL  FN+M+H +P P +  F  LL A+    +YY   I LS+++   GL PD  +L+
Sbjct: 75  IDDALASFNHMLHREPLPCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTLS 134

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           IL++CF  +  V  AF    ++++    PD VT   LI GLC  GKF +A   F  F A 
Sbjct: 135 ILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEAS 194

Query: 187 DCRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKV 215
            C+P V                                PNV+ Y  +ID LCKD  VN+ 
Sbjct: 195 GCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEA 254

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
             +F  MK + I PD F YNSLI+  C    W++A              +N    L ++ 
Sbjct: 255 LDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASA-----------LLNEMTSLNIM- 302

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
            P++ ++  +++++CK+  V +A+ +F  M   G+ PDVV YSSL+ GY L   I +ARK
Sbjct: 303 -PNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARK 361

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395
           LF ++ ++GC PD  SYN LI  Y K ++++EA  L+ EMI  G+ PDN           
Sbjct: 362 LFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDN----------- 410

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
                        +N L+ GLC+  RLR A +LFK +   G  P++ TY++++ G C EG
Sbjct: 411 -----------VNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEG 459

Query: 456 GIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
            + KA+                  L   M   Y+KPD    +IL + + K  N  +   L
Sbjct: 460 YLGKAF-----------------RLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKL 502

Query: 516 L 516
            
Sbjct: 503 F 503



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 159/316 (50%), Gaps = 17/316 (5%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +N+AL  F+YM   + +P + ++NSL+  L   + +     L   + ++ ++P+  + N+
Sbjct: 251 VNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNV 310

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++  CK   VS+A      +      PDVVT   L+ G  ++ +  EA  LF   +   
Sbjct: 311 LVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKG 370

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C+P+       Y  +I G CK   +++ + LF +M  +G+ PD   YN+LI   C     
Sbjct: 371 CKPDAFS----YNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLC----- 421

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               G    A +L +  ++ NG L     PD+ +Y  +++  CK+  + KA  LF  M+S
Sbjct: 422 --QLGRLREAQDLFKN-MHSNGNL-----PDLFTYSMLLDGFCKEGYLGKAFRLFRVMQS 473

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
             + PD+ +Y+ LID  C  G + DARKLF  +  +G +P+   Y T+IN+  K   ++E
Sbjct: 474 TYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDE 533

Query: 368 ALSLYGEMISMGVRPD 383
           AL  +  M   G  PD
Sbjct: 534 ALEAFRNMEGDGCPPD 549



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 137/287 (47%), Gaps = 17/287 (5%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E ++++A   F  M  M   P + +++SL+   + +   V    L + + T G  PD  S
Sbjct: 318 EGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFS 377

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            NIL+  +CK   + +A      ++ +  +PD V    LI GLC  G+  EA  LF    
Sbjct: 378 YNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMH 437

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
           +       +P++  Y+ ++DG CK+G++ K   LF  M+   + PD  +YN LI   C  
Sbjct: 438 S----NGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKF 493

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
            N +DA+   S      E FV G         P+V  Y +IIN+LCK+ L+D+A E F +
Sbjct: 494 GNLKDARKLFS------ELFVQG-------LLPNVQIYTTIINNLCKEGLLDEALEAFRN 540

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
           M+  G  PD   Y+ +I G+        A +L   +   G + +  +
Sbjct: 541 MEGDGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEMRDRGFVAEAGT 587



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 121/268 (45%), Gaps = 32/268 (11%)

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR-KLFVSIESEGCIPDTSSYN 353
           +D A   F  M  R  +P ++ ++ L+     MG+   A   L   +E  G  PD  + +
Sbjct: 75  IDDALASFNHMLHREPLPCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTLS 134

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCI---------LEAAELFRTLHNT 400
            LI+ +S +++V+ A S++ +MI +G++PD    N+ I          +A E F     +
Sbjct: 135 ILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEAS 194

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
             +  +  +  +++GLCK     +A  LFKK+   G +PNVVTY ++I  LC +  + +A
Sbjct: 195 GCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEA 254

Query: 461 YDLLPDMEEK------------------IRECLKAIELLHKMAKRYVKPDEITVSILEEL 502
            D+   M+ K                   R   +A  LL++M    + P+  T ++L + 
Sbjct: 255 LDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDA 314

Query: 503 LNKDENCHECMNLLPSFLSRNQEESKLT 530
           + K+    E   +  +      E   +T
Sbjct: 315 ICKEGKVSEAQGVFKTMTEMGVEPDVVT 342


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 145/475 (30%), Positives = 242/475 (50%), Gaps = 56/475 (11%)

Query: 37  SSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGA 96
           S+  S+SVS  + + +L K     ++  +++L+DA+  F  M+  +P P +  FN LL A
Sbjct: 40  SARASSSVSGGDLRERLSK-----TRLRDIKLHDAINLFREMVKTRPFPSIVDFNRLLSA 94

Query: 97  LAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPD 156
           +   K Y   I L +++  +G+  D  + NI++NCFC    VS A   LG++L+  + PD
Sbjct: 95  IVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSVLGKMLKLGYEPD 154

Query: 157 VVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVR 216
            VT+G L+ G C + + ++A  L  K V    RP+++     Y +IID LCK   VN   
Sbjct: 155 RVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVA----YNAIIDSLCKTRRVNDAL 210

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA-------------------------- 250
             F ++  +GI P+   Y +L+   C +  W DA                          
Sbjct: 211 DFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAF 270

Query: 251 --KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
              G    A E+ EE V       +   PD+++Y S+IN LC    +D+A ++F  M S+
Sbjct: 271 VKNGKVLEAKEIFEEMVR------MSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSK 324

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G  PDVV Y++LI+G+C   R++D  KLF  +   G + +T +YNTLI  + ++  V++A
Sbjct: 325 GCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKA 384

Query: 369 LSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDG 415
              + +M S GV PD             N  + +A  +F  +  ++ +LD+  +  ++ G
Sbjct: 385 QEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQG 444

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           +CK+ ++  AW LF  L   G +P++VTYT M+ GLC +G   +   L   M+++
Sbjct: 445 MCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTKGLQHEVEALYTKMKQE 499



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 164/370 (44%), Gaps = 57/370 (15%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           AL     M+ +   P   +  SL+     +    + + L +++  IG  PD V+ N +++
Sbjct: 139 ALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIID 198

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
             CK   V+DA      I RK   P+VVT   L+ GLC  G++ +A+ L    +     P
Sbjct: 199 SLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITP 258

Query: 191 NVI-------------------------------PNVICYASIIDGLCKDGFVNKVRVLF 219
           NVI                               P+++ Y+S+I+GLC    +++   +F
Sbjct: 259 NVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMF 318

Query: 220 LDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK------------GNTS------------ 255
             M  +G +PD   YN+LI  +C A   ED               NT             
Sbjct: 319 DLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQV 378

Query: 256 AALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV 315
             ++  +EF +     GV   PD+ +Y  ++  LC + L++KA  +F DM+   +  D+V
Sbjct: 379 GDVDKAQEFFSQMDSFGV--SPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIV 436

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
            Y+++I G C  G+++DA  LF S+  +G  PD  +Y T+++         E  +LY +M
Sbjct: 437 TYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTKGLQHEVEALYTKM 496

Query: 376 ISMGVRPDNS 385
              G+  ++S
Sbjct: 497 KQEGLMKNDS 506



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 92/232 (39%), Gaps = 39/232 (16%)

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           +D+ +  A  LF +M      P +V ++ L+     M + D    L   +E  G   D  
Sbjct: 62  RDIKLHDAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLY 121

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFN 410
           ++N +IN +    +V  ALS+ G+M+ +G  PD   I                       
Sbjct: 122 TFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTI----------------------G 159

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            LV+G C+  R+  A  L  K+   G  P++V Y  +I  LC                 K
Sbjct: 160 SLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLC-----------------K 202

Query: 471 IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
            R    A++   ++ ++ ++P+ +T + L   L      ++   LL   + R
Sbjct: 203 TRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKR 254


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 158/551 (28%), Positives = 261/551 (47%), Gaps = 110/551 (19%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +++AL  FN M+HMQP P +  F  +L ++A  K+Y   + LS++++++G+  D  +L I
Sbjct: 55  IDEALSSFNRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAI 114

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++N FC +  V   F  L +I +    PD  T   LIRGLC++GK  EA  LF K V   
Sbjct: 115 VINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEG 174

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
            +PN +                               PNVI Y +IID L KD  VN+  
Sbjct: 175 FQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEAL 234

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            +F +M  +GI P+   YNS+I   C    W+           L  E V+          
Sbjct: 235 NIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVA-------TLMNEMVDSK------IM 281

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+V+ + +++++LCK+ +V  A ++   M  RG+ PDVV Y++L+DG+CL   +D+A K+
Sbjct: 282 PNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKV 341

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVE------------------------------ 366
           F ++  +GC P+  SY+TLIN Y KI++++                              
Sbjct: 342 FDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCH 401

Query: 367 -----EALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTV 408
                +A++L+ EM++ G  PD                + +A  + + +  +    D+  
Sbjct: 402 VGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQS 461

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +N ++DG+C+   L +A +LF  L   G  P+V TYT+MI GLC++G + +A  L  +M 
Sbjct: 462 YNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMN 521

Query: 469 E------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCH 510
                              +  E L AI+LL +M  R    D  T++++ E+L+ D    
Sbjct: 522 TDGCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTITLIVEMLSDDGLDQ 581

Query: 511 ECMNLLPSFLS 521
               +L  F+ 
Sbjct: 582 SVKQILHEFVQ 592


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 160/512 (31%), Positives = 247/512 (48%), Gaps = 78/512 (15%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIGLL 119
           KS + ++N+ +  F+ M+ M+PTP +  FN +LG++  A   +Y   I LS +L   G+ 
Sbjct: 32  KSNDFDVNNDVSSFHRMLRMRPTPSIVEFNKILGSIVKANNNHYTTAISLSHQLELKGIT 91

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P  V+ NIL+NC+C +  ++ AF    +IL+  + P  +T   LI G+C+ GK  EA   
Sbjct: 92  PTIVTFNILVNCYCHLGEMTFAFSIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHF 151

Query: 180 FTKFVAFDCRPNVI-------------------------------PNVICYASIIDGLCK 208
               +A     + +                                +V+ Y  II+ LCK
Sbjct: 152 HDHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCK 211

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           D  V+    L+ +M  + I PD   +NSLI  +C         G    A  L  E V  N
Sbjct: 212 DKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVV-------GQLKEAFGLFHEMVLKN 264

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                  +PDV ++  ++++LCKD  + +AK +   M  +G+IPDVV YSSL+DGYCL+ 
Sbjct: 265 ------INPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVN 318

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC-- 386
            ++ A+ +F ++   G  P   SYN +IN   KI+ V+EALSL+ EM   G+ PD     
Sbjct: 319 EVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYN 378

Query: 387 -----------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
                      I  A +L   +HN     D+  +N L+D LCK+  +  A  L KK+   
Sbjct: 379 SLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQ 438

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK----------------IRECL--KA 477
           G +P++ TY ++I GLC  G ++ A D+  D+  K                 +E L  +A
Sbjct: 439 GIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEA 498

Query: 478 IELLHKMAKRYVKPDEITV-SILEELLNKDEN 508
             LL KM    + PD +T  +I+  L  KDEN
Sbjct: 499 EVLLSKMENNGIIPDAVTYETIIRALFRKDEN 530



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 128/414 (30%), Positives = 203/414 (49%), Gaps = 30/414 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L +AL F +++I +       S+ +L+  L         + + +++    +  D V  N
Sbjct: 144 KLKEALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYN 203

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           I++N  CK   VSDA+     ++ K  SPDVVT   LI G C+ G+  EA GLF + V  
Sbjct: 204 IIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVL- 262

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
               N+ P+V  ++ ++D LCKDG + + + +   M  +G+ PD   Y+SL+  YC    
Sbjct: 263 ---KNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNE 319

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
              AK   S               LGV   P   SY  +IN L K  +VD+A  LF +M 
Sbjct: 320 VNKAKHVFSTM-----------SRLGVA--PHAHSYNIMINGLGKIKMVDEALSLFKEMC 366

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            +GI PD V Y+SLIDG C +GRI  A +L   + + G   D  +YN+LI+   K   ++
Sbjct: 367 CKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHID 426

Query: 367 EALSLYGEMISMGVRP---------DNSC----ILEAAELFRTLHNTKFELDLTVFNCLV 413
           +A++L  ++   G++P         D  C    +  A ++F+ L    + ++   +N ++
Sbjct: 427 KAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMI 486

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +GLCK      A  L  K+   G  P+ VTY  +I  L  +   EKA  LL +M
Sbjct: 487 NGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALFRKDENEKAEKLLREM 540



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 118/266 (44%), Gaps = 42/266 (15%)

Query: 277 PDVLSYCSIINSLCK--DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
           P ++ +  I+ S+ K  +     A  L   ++ +GI P +V ++ L++ YC +G +  A 
Sbjct: 55  PSIVEFNKILGSIVKANNNHYTTAISLSHQLELKGITPTIVTFNILVNCYCHLGEMTFAF 114

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
            +F  I   G  P T ++NTLIN      K++EAL  +  +I++G               
Sbjct: 115 SIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHVIALG--------------- 159

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
                  F LD   +  L++GLCK    R+A ++ KK+       +VV Y ++I  LC +
Sbjct: 160 -------FHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKD 212

Query: 455 GGIEKAYDLLPDMEEK------------------IRECLKAIELLHKMAKRYVKPDEITV 496
             +  AY L  +M  K                  + +  +A  L H+M  + + PD  T 
Sbjct: 213 KAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTF 272

Query: 497 SILEELLNKDENCHECMNLLPSFLSR 522
           SIL + L KD N     N+L   + +
Sbjct: 273 SILVDALCKDGNITRAKNMLAVMMKQ 298



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 113/245 (46%), Gaps = 17/245 (6%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E+N A   F+ M  +   P   S+N ++  L   K     + L + +   G+ PD V+ N
Sbjct: 319 EVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYN 378

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++  CK+  +S A+  +  +       D++T   LI  LC      +A  L  K    
Sbjct: 379 SLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIK-- 436

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                + P++  Y  +IDGLCK G +   + +F D+  +G   +A+ YN +I   C    
Sbjct: 437 --DQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLC---- 490

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
               +G  + A  L  +  N     G+I  PD ++Y +II +L +    +KA++L  +M 
Sbjct: 491 ---KEGLFNEAEVLLSKMENN----GII--PDAVTYETIIRALFRKDENEKAEKLLREMI 541

Query: 307 SRGII 311
            RG++
Sbjct: 542 IRGLL 546


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 150/466 (32%), Positives = 230/466 (49%), Gaps = 72/466 (15%)

Query: 40  HSNSVSTVEEKTKLLK----YLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLG 95
           H    ST  +K  L K    ++S NS +  V ++DAL  F  M+ + P P +  F   LG
Sbjct: 44  HHFLTSTSTKKPSLPKNNDGFVSNNSNN--VCVDDALASFYRMVRINPRPSVVEFGKFLG 101

Query: 96  ALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSP 155
           + A KK Y   + L  +++   +  +  SLNIL+NC C++  V  +   LG++ +    P
Sbjct: 102 SFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHP 161

Query: 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI---------------------- 193
           D +T   LI GLC +GK  EA  LF + V     PNVI                      
Sbjct: 162 DAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVF 221

Query: 194 ---------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
                    PNV+ Y++IID LCKD  VN       +M  RGI P+ F YNS++  +C  
Sbjct: 222 KKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNL 281

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                  G  + A  L +E V      G    P+ +++  +++ LCK+ +V +A+ +F  
Sbjct: 282 -------GQLNEATRLFKEMV------GRDVMPNTVTFTILVDGLCKEGMVSEARLVFET 328

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M  +G+ PD+  Y++L+DGYCL   +++A+K+F  +  +GC P   SYN LIN Y K  +
Sbjct: 329 MTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRR 388

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
           ++EA SL  EM    + PD                         ++ L+ GLC+  R + 
Sbjct: 389 MDEAKSLLAEMYHKALNPDT----------------------VTYSTLMQGLCQLGRPKE 426

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           A  LFK++  YGP PN+VTY +++ G C  G +++A  LL  M+EK
Sbjct: 427 ALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEK 472



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 128/466 (27%), Positives = 223/466 (47%), Gaps = 57/466 (12%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N    E ++ +A+  FN M+     P + S+ +++  L         + + +++   G  
Sbjct: 171 NGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCK 230

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ V+ + +++  CK   V+DA   L  ++ +   P+V T   ++ G C  G+  EA+ L
Sbjct: 231 PNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRL 290

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F + V  D    V+PN + +  ++DGLCK+G V++ R++F  M  +G+ PD   YN+L+ 
Sbjct: 291 FKEMVGRD----VMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMD 346

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            YC      +AK       ++ E  +         C P   SY  +IN  CK   +D+AK
Sbjct: 347 GYCLQRLMNEAK-------KVFEIMIRKG------CAPGAHSYNILINGYCKSRRMDEAK 393

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            L  +M  + + PD V YS+L+ G C +GR  +A  LF  + S G  P+  +Y  L++ +
Sbjct: 394 SLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGF 453

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            K   ++EAL                      +L +++   K E ++  +  L++G+  +
Sbjct: 454 CKHGHLDEAL----------------------KLLKSMKEKKLEPNIVHYTILIEGMFIA 491

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE---------- 469
            +L  A ELF KL   G  P++ TYTVMI GL  EG  ++AYDL   ME+          
Sbjct: 492 GKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSY 551

Query: 470 --------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDE 507
                   + ++   AI L+ +M  +    +  T  +L +L ++DE
Sbjct: 552 NVMIQGFLQNQDSSTAIRLIDEMVGKRFSVNLSTFQMLLDLESQDE 597



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 106/392 (27%), Positives = 174/392 (44%), Gaps = 47/392 (11%)

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           V DA  +  R++R    P VV  G  +     + +++    L  +   F     V  NV 
Sbjct: 74  VDDALASFYRMVRINPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLF----RVTHNVY 129

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
               +I+ LC+   V+    +   M   GI+PDA  +N+LI   C        +G    A
Sbjct: 130 SLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLC-------NEGKIKEA 182

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
           +EL  E V    E      P+V+SY ++IN LCK      A ++F  M+  G  P+VV Y
Sbjct: 183 VELFNEMVKRGHE------PNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTY 236

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           S++ID  C    ++DA +    +   G  P+  +YN++++ +  + ++ EA  L+ EM+ 
Sbjct: 237 STIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVG 296

Query: 378 MGVRP---------DNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
             V P         D  C    + EA  +F T+     E D++ +N L+DG C    +  
Sbjct: 297 RDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNE 356

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKM 484
           A ++F+ + R G  P   +Y ++I G C                 K R   +A  LL +M
Sbjct: 357 AKKVFEIMIRKGCAPGAHSYNILINGYC-----------------KSRRMDEAKSLLAEM 399

Query: 485 AKRYVKPDEITVSILEELLNKDENCHECMNLL 516
             + + PD +T S L + L +     E +NL 
Sbjct: 400 YHKALNPDTVTYSTLMQGLCQLGRPKEALNLF 431



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 88/211 (41%), Gaps = 40/211 (18%)

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE 389
           +DDA   F  +      P    +   + S++K ++    +SL  +M              
Sbjct: 74  VDDALASFYRMVRINPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQM-------------- 119

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
             +LFR  HN      +   N L++ LC+   +  +  +  K+ + G  P+ +T+  +I 
Sbjct: 120 --DLFRVTHN------VYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALIN 171

Query: 450 GLCIEGGIEKAYDLLPDMEEKIRE------------------CLKAIELLHKMAKRYVKP 491
           GLC EG I++A +L  +M ++  E                     A+++  KM +   KP
Sbjct: 172 GLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKP 231

Query: 492 DEITVSILEELLNKDENCHECMNLLPSFLSR 522
           + +T S + + L KD   ++ M  L   + R
Sbjct: 232 NVVTYSTIIDSLCKDRLVNDAMEFLSEMVER 262


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 148/447 (33%), Positives = 230/447 (51%), Gaps = 57/447 (12%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +NDAL  FN+M++  P P +  F  L  AL   K+Y   + LS+++   G+  D +SL I
Sbjct: 72  INDALSAFNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTI 131

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+NCFC++  V   F  LG+I++    P+V+T   LI G C++GK   A  LF   VA  
Sbjct: 132 LINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARG 191

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
            +PNV                                P+V+ Y +I+D LCKD  VN+  
Sbjct: 192 YKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAV 251

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            +F  MKG GI P    Y SLI        W++A G       L  E   GN        
Sbjct: 252 HIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFG-------LLNEMKGGN------IM 298

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PD++++  +I+ +CK+  V +A+ +   M   G+ PDV  Y++L++GYCL   + +ARK+
Sbjct: 299 PDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKV 358

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCI----- 387
           F  + S+G +PD  S++ L+N Y K ++++EA  L+ EM   G+ PD    N+ I     
Sbjct: 359 FEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQ 418

Query: 388 ----LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
               LEA ELF+ +H+  +  +L  ++ L+D L K   L  A  LF+ +   G +P++VT
Sbjct: 419 ARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVT 478

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEK 470
           Y +MI G+C  G  + A +L  ++  K
Sbjct: 479 YNIMIDGMCKYGKFKDARELFAELSVK 505



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 202/405 (49%), Gaps = 39/405 (9%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E ++  A+  F+ M+     P + S++ ++  L         I L E +  +G  PD V 
Sbjct: 174 EGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVI 233

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N +++  CK   V++A     ++      P VVT   LI GL   G++ EA GL  +  
Sbjct: 234 YNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMK 293

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
                 N++P+++ ++ +ID +CK+G V++ RV+   M   G+ PD   YN+L+  YC  
Sbjct: 294 G----GNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLR 349

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
           +   +A+       ++ E  ++  G +     PDV S+  ++N  CK   +D+AK+LF +
Sbjct: 350 MEVVEAR-------KVFEVMIS-KGRM-----PDVFSFSILVNGYCKAKRIDEAKQLFDE 396

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M  RG+IPD V Y++LI G C   R  +A +LF  + S G  P+  +Y+ L++  SK   
Sbjct: 397 MTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGY 456

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
           +++A+                       LFR + N+  + DL  +N ++DG+CK  + + 
Sbjct: 457 LDQAMG----------------------LFRAMENSGLKPDLVTYNIMIDGMCKYGKFKD 494

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           A ELF +L   G +PN    T  I G+C  G +++A+     ME+
Sbjct: 495 ARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEK 539



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 154/322 (47%), Gaps = 21/322 (6%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +N+A+  F  M      P + ++ SL+  L     +     L   +    ++PD V+ ++
Sbjct: 247 VNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSV 306

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++  CK   VS+A V L  +      PDV T   L+ G C++ +  EA  +F   ++  
Sbjct: 307 LIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMIS-- 364

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
                +P+V  ++ +++G CK   +++ + LF +M  RG+ PD   YN+LI   C A   
Sbjct: 365 --KGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQA--- 419

Query: 248 EDAKGNTSAALELHEEF--VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
                     LE  E F  ++ NG       P++++Y  +++ L K   +D+A  LF  M
Sbjct: 420 -------RRPLEAEELFKDMHSNGY-----PPNLVTYSILLDCLSKQGYLDQAMGLFRAM 467

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
           ++ G+ PD+V Y+ +IDG C  G+  DAR+LF  +  +G  P+       I+   K   +
Sbjct: 468 ENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLL 527

Query: 366 EEALSLYGEMISMGVRPDNSCI 387
           +EA   + +M      P   CI
Sbjct: 528 DEAHKAFRQMEKDDCSPAQGCI 549



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 147/346 (42%), Gaps = 56/346 (16%)

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC--CAVNWE 248
           N +P+++ +  +   L +      V  L   M+  GI  D      LI  +C  C V++ 
Sbjct: 86  NPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTILINCFCRLCHVDY- 144

Query: 249 DAKGNTSAALELHEEFVNGNGELGVIC----HPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                             G   LG I      P+V+++ ++IN  C +  + +A ELF  
Sbjct: 145 ------------------GFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDV 186

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M +RG  P+V  YS +I G C +G+  +  KL   ++  GC PD   YNT+++   K   
Sbjct: 187 MVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRL 246

Query: 365 VEEALSLYGEMISMGVRPD----NSCIL---------EAAELFRTLHNTKFELDLTVFNC 411
           V EA+ ++ +M   G+ P      S I          EA  L   +       DL  F+ 
Sbjct: 247 VNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSV 306

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL-------- 463
           L+D +CK   +  A  + K +   G EP+V TY  ++ G C+   + +A  +        
Sbjct: 307 LIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKG 366

Query: 464 -LPDMEE---------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
            +PD+           K +   +A +L  +M  R + PD ++ + L
Sbjct: 367 RMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTL 412



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 115/256 (44%), Gaps = 40/256 (15%)

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
           E+  I H DVLS   +IN  C+   VD    +   +   G+ P+V+ +S+LI+G+C+ G+
Sbjct: 118 EMAGISH-DVLSLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGK 176

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE 389
           I  A +LF  + + G  P+  SY+ +I    ++ K  E + L   M  +G  PD      
Sbjct: 177 IGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPD------ 230

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
                           + ++N +VD LCK   +  A  +F K+   G  P VVTYT +I 
Sbjct: 231 ----------------VVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIH 274

Query: 450 GLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENC 509
           GL   G  ++A+ LL +M+                    + PD +  S+L +++ K+   
Sbjct: 275 GLRNLGRWKEAFGLLNEMKGG-----------------NIMPDLVAFSVLIDIMCKEGEV 317

Query: 510 HECMNLLPSFLSRNQE 525
            E   +L +      E
Sbjct: 318 SEARVILKTMTEMGVE 333


>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 165/545 (30%), Positives = 262/545 (48%), Gaps = 94/545 (17%)

Query: 21  LRNSKKPISLNSENEPSSLHSNSVST-----VEEKTKLLKYLSENSK------SGEVELN 69
           + + K PI   +    +++   + +T     + + +  L++ S++ K      SG   ++
Sbjct: 1   MESPKNPIFFFNFGRKAAMLYAATTTRLRYAISKFSVFLRFFSDSQKQNAKKKSGFDAID 60

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DA+  F  +I M P P +  FN +LG++   K+Y   I LS+++   G+ P  V+L+IL+
Sbjct: 61  DAVALFTRLITMHPLPSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITPSIVTLSILI 120

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE---------ASGLF 180
           NC+C +  +  AF  LG +L++ +  + +TL  +++GLC+ G+  +         A G  
Sbjct: 121 NCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQGFL 180

Query: 181 TKFVAFDCRPN----------------------VIPNVICYASIIDGLCKDGFVNKVRVL 218
              V +    N                      V PNV+ Y  I+DGLCKDG V + R L
Sbjct: 181 LDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDL 240

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD 278
           + D+ GRGI PD F Y  LI  +C    W +    T    ++ +  VN N          
Sbjct: 241 YSDVVGRGIDPDVFTYTCLIHGFCGLGQWREV---TRLLCDMVDRNVNLN---------- 287

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
           V +Y  +I++LCK  ++ KA ++   M  RG  PD+V +++L+ GYCL   + +ARKLF 
Sbjct: 288 VYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFD 347

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398
           +    G  PD  SYN LI  Y K  +++EALSL+ +M    + P                
Sbjct: 348 TFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAP---------------- 391

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
                 ++  ++ L+DGLCKS R+  AWELF  +   GP PNV+TY +M+  LC      
Sbjct: 392 ------NIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALC------ 439

Query: 459 KAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPS 518
                      KI+   KAIEL + M +R + P+  + +IL     K +   E MNL   
Sbjct: 440 -----------KIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEE 488

Query: 519 FLSRN 523
              RN
Sbjct: 489 MHRRN 493



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 116/341 (34%), Positives = 173/341 (50%), Gaps = 30/341 (8%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ V  N++++  CK   V++A      ++ +   PDV T  CLI G C  G++ E + L
Sbjct: 216 PNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRL 275

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
               V      NV  NV  Y  +ID LCK G + K   +   M  RG  PD   +N+L+ 
Sbjct: 276 LCDMV----DRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMS 331

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            YC   +  +A+       +L + F     E G+   PDV SY  +I   CK+  +D+A 
Sbjct: 332 GYCLYNDVVEAR-------KLFDTF----AECGIT--PDVWSYNILIIGYCKNNRIDEAL 378

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            LF  M  + + P++V YSSLIDG C  GRI  A +LF +I   G  P+  +YN ++++ 
Sbjct: 379 SLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDAL 438

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDL 406
            KI+ V++A+ L+  M   G+ P+ S              I EA  LF  +H      D 
Sbjct: 439 CKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDS 498

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
             +NCL+DGLCKS R+  AWELF  +   GP  +V+TY ++
Sbjct: 499 VTYNCLIDGLCKSGRISHAWELFNVMHDGGPPVDVITYNIL 539



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/249 (34%), Positives = 121/249 (48%), Gaps = 17/249 (6%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  PD V+ N LM+ +C    V +A            +PDV +   LI G C   +  EA
Sbjct: 318 GQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEA 377

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             LF K         + PN++ Y+S+IDGLCK G ++    LF  +   G  P+   YN 
Sbjct: 378 LSLFNKM----NYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNI 433

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           ++    C +   D       A+EL     N   E G+   P+V SY  +IN  CK   +D
Sbjct: 434 MLDA-LCKIQLVDK------AIEL----FNLMFERGLT--PNVSSYNILINGYCKSKRID 480

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A  LF +M  R ++PD V Y+ LIDG C  GRI  A +LF  +   G   D  +YN L 
Sbjct: 481 EAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGGPPVDVITYNILF 540

Query: 357 NSYSKIEKV 365
           +++SKI+ V
Sbjct: 541 DAFSKIQHV 549


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 174/608 (28%), Positives = 285/608 (46%), Gaps = 126/608 (20%)

Query: 9   SRTAFKVKPSSSLRNSKKPISLNS----ENEPSSL----HSNSVSTVEEKTKLLK----Y 56
            + AFK   SSS+   ++ + +       + PS L    H  + ST  +K  L +    +
Sbjct: 6   QKNAFKASASSSIWVVQQHMEMGFYLFLPDFPSFLFFNHHHITTSTCTKKRSLPQNNGGF 65

Query: 57  LSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           LS NS    + ++DAL  F  M+ M P P +  F   LG++A KK Y   + L  +++  
Sbjct: 66  LSNNS----ISIDDALASFYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLF 121

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+  +  SLNIL+NC C++  V  A   LG++ +    PD +T   LI G C++G+  EA
Sbjct: 122 GVTHNVYSLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEA 181

Query: 177 SGLFTKFVAFDCRPNVI-------------------------------PNVICYASIIDG 205
            GLF + V    +P+VI                               PN++ Y +IID 
Sbjct: 182 VGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDS 241

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
           LCKD  VN    L  +M  RGI PD   Y++++  +C       + G+ + A  L  E V
Sbjct: 242 LCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFC-------SLGHLNEATILFNEMV 294

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
             N        P+ +++  +++ LCK+ +V +A+ +F  M  +G  P+   Y++L+DGYC
Sbjct: 295 GRN------VMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYC 348

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK------------------------ 361
           L  ++D+A+K+   +  +GC P   SYN LIN Y K                        
Sbjct: 349 LNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTV 408

Query: 362 -----------IEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTL 397
                      + + +EAL+L+ EM S G+ PD             +  + EA +L +++
Sbjct: 409 TYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSM 468

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
             +K E D+ ++N L++G+  + +L  A ELF KL   G +P + TYT+MI GL  EG  
Sbjct: 469 QESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLS 528

Query: 458 EKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           ++AY+L   ME+                  + ++   AI L+ +M  +    D  T  +L
Sbjct: 529 DEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKRFSADSSTFQML 588

Query: 500 EELLNKDE 507
            +L ++DE
Sbjct: 589 LDLESRDE 596



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/404 (26%), Positives = 173/404 (42%), Gaps = 57/404 (14%)

Query: 136 IGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPN 195
           I + DA  +  R+LR    P VV  G  +  +  + +++    L  +   F     V  N
Sbjct: 71  ISIDDALASFYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLF----GVTHN 126

Query: 196 VICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTS 255
           V     +I+ LC+   V     +   M   GI PDA  +N+LI   C        +G   
Sbjct: 127 VYSLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCI-------EGEIK 179

Query: 256 AALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV 315
            A+ L  E V    +      PDV+SY ++IN LCK      A +L   M+ +G  P++V
Sbjct: 180 EAVGLFNEMVRRGHQ------PDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLV 233

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
            Y+++ID  C    ++DA  L   +   G  PD  +Y+T+++ +  +  + EA  L+ EM
Sbjct: 234 AYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEM 293

Query: 376 ISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
           +   V P+                         F  LVDGLCK   +  A  +F+ + + 
Sbjct: 294 VGRNVMPNT----------------------VTFTILVDGLCKEGMVSEARCVFEAMTKK 331

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK------------------IRECLKA 477
           G EPN  TY  ++ G C+   +++A  +L  M +K                   R   +A
Sbjct: 332 GAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEA 391

Query: 478 IELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
             LL +M+++ + PD +T S L + L +     E +NL     S
Sbjct: 392 KSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCS 435


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  244 bits (624), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 158/494 (31%), Positives = 246/494 (49%), Gaps = 76/494 (15%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           M+ ++ TP +  FN +LG+LA  K Y+  I LS+++   G+  +FV+LNIL+NCFC +  
Sbjct: 1   MLLVRHTPPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQ 60

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI---- 193
           ++ +F  LG+IL+  + PD +TL  L++GLC++G+  ++     K VA   + + +    
Sbjct: 61  MAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGT 120

Query: 194 ---------------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
                                      PNV+ Y +IIDGLCKD  VN+   L+ +M  RG
Sbjct: 121 LLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARG 180

Query: 227 IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII 286
           I+PDA  Y +LI  +C         G    A  L +E +  N       +P V  Y  +I
Sbjct: 181 IFPDAITYTTLIYGFCLL-------GQLMGAFSLLDEMILKN------INPGVYIYNILI 227

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           N+LCK+  V +AK L   M   GI P VV YS+L+DGYCL+G + +A+++F ++   G  
Sbjct: 228 NALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVN 287

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAEL 393
           P+  SYN +IN   K ++V+EA++L  EM+   + PD                I  A  L
Sbjct: 288 PNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNL 347

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
              +H+     D+  +  L+D LCK+  L  A  LF K+   G +P + TYT +I GLC 
Sbjct: 348 MNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCK 407

Query: 454 EGGIEKAYDLLPDMEEK----------------IRECL--KAIELLHKMAKRYVKPDEIT 495
            G ++ A +L   +  K                 +E +  +A+ +  KM      P+ +T
Sbjct: 408 GGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVT 467

Query: 496 VS-ILEELLNKDEN 508
              I+  L  KDEN
Sbjct: 468 FEIIIRSLFEKDEN 481



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 147/314 (46%), Gaps = 17/314 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L  A    + MI     P +  +N L+ AL  +        L   +   G+ P  V+ +
Sbjct: 200 QLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYS 259

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            LM+ +C +  V +A      +++   +P+V +   +I GLC   +  EA  L  + +  
Sbjct: 260 TLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREML-- 317

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
               N++P+ + Y S+IDGLCK G +     L  +M  RG   D   Y SL+   C   N
Sbjct: 318 --HKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQN 375

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            + A   T+  +++ E  +           P + +Y ++I+ LCK   +  A+ELF  + 
Sbjct: 376 LDKA---TALFMKMKERGI----------QPTMYTYTALIDGLCKGGRLKNAQELFQHLL 422

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            +G   DV  Y+ +I G C  G  D+A  +   +E  GCIP+  ++  +I S  + ++ +
Sbjct: 423 VKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDEND 482

Query: 367 EALSLYGEMISMGV 380
           +A  L  EMI+ G+
Sbjct: 483 KAEKLLHEMIAKGL 496



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 125/268 (46%), Gaps = 27/268 (10%)

Query: 116 IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
           +G+ P+  S NI++N  CK   V +A   L  +L K   PD VT   LI GLC  G+ T 
Sbjct: 284 MGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITS 343

Query: 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
           A  L  + +    +P    +V+ Y S++D LCK+  ++K   LF+ MK RGI P  + Y 
Sbjct: 344 ALNLMNE-MHHRGQP---ADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYT 399

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEF-VNGNGELGVICHPDVLSYCSIINSLCKDVL 294
           +LI   C         G    A EL +   V G       C  DV +Y  +I+ LCK+ +
Sbjct: 400 ALIDGLC-------KGGRLKNAQELFQHLLVKG-------CCIDVWTYTVMISGLCKEGM 445

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG-CIPDTSSYN 353
            D+A  +   M+  G IP+ V +  +I         D A KL   + ++G  + D    +
Sbjct: 446 FDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGLLVLDFKVAD 505

Query: 354 TLI-NSYSKIEKVEEALSLYGEMISMGV 380
             + N   K EK      L  EMI+ G+
Sbjct: 506 VFVQNENDKAEK------LLHEMIAKGL 527


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 174/629 (27%), Positives = 288/629 (45%), Gaps = 124/629 (19%)

Query: 19   SSLRNSKKPISLNS--ENEPSSLHSNS----VSTVEEKTKLLKYLSENSKSGEVELNDAL 72
            S L+ S  P SL+S  +N P    SNS    + T    +   +Y+ +  + G ++LNDA+
Sbjct: 872  SILQKSDIPXSLSSLFKNPPQRSGSNSKSEKIGTKASLSPFERYVRDQCRFGIIKLNDAI 931

Query: 73   CFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCF 132
              F+  +  +P P   +FN LL ++A   YY     +  ++N +G+ PD  +LNIL++C 
Sbjct: 932  KLFDRSLCSEPMPCTDTFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLNILIHCC 991

Query: 133  CKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF--------- 183
            C +  V   F   G  L++ F PD VT+  L++G+ M+    +A  LF +          
Sbjct: 992  CSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDA 1051

Query: 184  ---------------------VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
                                 +    + N   +V  Y  IID LCKDG   +   +F +M
Sbjct: 1052 KTYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFTYGMIIDALCKDGMTTEALDMFSEM 1111

Query: 223  KGRGIYPDAFVYNSLIRVYCCAVNWEDA--------KGNTSAALELHEEFVNGNGELGVI 274
             G GI PD  VY+SL+   C     ++A            SA +  +   ++G    G+ 
Sbjct: 1112 IGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLW 1171

Query: 275  CH--------------PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
                            PD  ++  +I+ LCK+  V +A+++   M+ +G  PD++ Y++L
Sbjct: 1172 KEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTL 1231

Query: 321  IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
            ++G CL+G+++DA KLF S+   G   +  SYN LIN Y K +K++EA   + EM   G+
Sbjct: 1232 MNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGL 1291

Query: 381  RPD------------------------------------------------NSCILEAAE 392
            +P                                                 N  + EA +
Sbjct: 1292 KPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMD 1351

Query: 393  LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
            LF+++  T+ + ++ VF+ L+DG+C++ +L  AW+ F ++ + G EP+ + Y ++I GLC
Sbjct: 1352 LFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLC 1411

Query: 453  IEGGIEKAYDLLPDMEEK------------IRECLK------AIELLHKMAKRYVKPDEI 494
             +G + +A  LL  MEEK            I+  LK      AI+LL +M  R   PDE 
Sbjct: 1412 NKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEA 1471

Query: 495  TVSILEELLNKDENCHECMNLLPSFLSRN 523
              S+L  L + D   H  +  LP+ L + 
Sbjct: 1472 VTSMLLCLASFDPQWHAALVSLPNALQKG 1500



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/369 (22%), Positives = 148/369 (40%), Gaps = 45/369 (12%)

Query: 193  IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252
            +P    +  ++  + K G+ + V  ++  +   GI PD +  N LI  +CC        G
Sbjct: 943  MPCTDTFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLNILI--HCCCSLRAVGCG 1000

Query: 253  NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
                   L   F            PD ++  +++  +  +  +  A +LF +M  +G++ 
Sbjct: 1001 FGVFGGFLKRGF-----------EPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLG 1049

Query: 313  DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
            D   Y  LI+G C   +   A KL   ++   C  D  +Y  +I++  K     EAL ++
Sbjct: 1050 DAKTYGILINGLCKARKTGLAIKLHEKMKGN-CKGDVFTYGMIIDALCKDGMTTEALDMF 1108

Query: 373  GEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
             EMI  G+ PD                + EA E F+ +       D+  +N L+ GL ++
Sbjct: 1109 SEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRA 1168

Query: 420  WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE------ 473
               +        +   G  P+  T+T++I GLC EG + +A  +L  M  K +E      
Sbjct: 1169 GLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTY 1228

Query: 474  -------CL-----KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
                   CL      A +L   +A R +K +  + +IL     KD+   E          
Sbjct: 1229 NTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRP 1288

Query: 522  RNQEESKLT 530
            +  + S +T
Sbjct: 1289 KGLKPSTVT 1297


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 142/471 (30%), Positives = 240/471 (50%), Gaps = 56/471 (11%)

Query: 41  SNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGK 100
           S+SVS  + + +L K     ++  +++LNDA+  F+ M+  +P P +  FN LL A+   
Sbjct: 147 SSSVSGGDLRERLSK-----TRLRDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKL 201

Query: 101 KYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTL 160
           K Y   I L +++  +G+  D  + NI++NCFC    VS A   LG++L+  + PD VT+
Sbjct: 202 KKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTI 261

Query: 161 GCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFL 220
           G L+ G C + + ++A  L  K V    +P+++     Y +IID LCK   VN     F 
Sbjct: 262 GSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVA----YNAIIDSLCKTKRVNDAFDFFK 317

Query: 221 DMKGRGIYPDAFVYNSLIRVYCCAVNWEDA----------------------------KG 252
           +++ +GI P+   Y +L+   C +  W DA                             G
Sbjct: 318 EIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNG 377

Query: 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
               A EL EE V       +   PD+++Y S+IN LC    +D+A ++F  M S+G + 
Sbjct: 378 KVLEAKELFEEMVR------MSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLA 431

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
           DVV Y++LI+G+C   R++D  KLF  +   G + +T +YNTLI  + +   V++A   +
Sbjct: 432 DVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFF 491

Query: 373 GEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            +M   G+ PD             N  + +A  +F  +   + +LD+  +  ++ G+CK+
Sbjct: 492 SQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKT 551

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            ++  AW LF  L   G +P++VTYT M+ GLC +G + +   L   M+++
Sbjct: 552 GKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQE 602



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 139/494 (28%), Positives = 238/494 (48%), Gaps = 95/494 (19%)

Query: 57   LSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
            LS N  S E++L+DA+  F  M+  +P P +  F+ LL A+A    +   I L E++  +
Sbjct: 666  LSRNGLS-ELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNL 724

Query: 117  GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC-------- 168
            G+  +  + +IL+NCFC+   +  A   LG++++  + P++VTL  L+ G C        
Sbjct: 725  GIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEA 784

Query: 169  ---------------------------MQGKFTEASGLFTKFVAFDCRPNVI-------- 193
                                       +  K +EA  L  + VA  C+P+++        
Sbjct: 785  VALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNG 844

Query: 194  -----------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
                                   P V+ Y +IIDGLCK   ++    LF +M+ +GI P+
Sbjct: 845  LCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPN 904

Query: 231  AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
               Y+SLI   C    W DA    S  +E                +PDV ++ ++I++  
Sbjct: 905  VVTYSSLISCLCNYGRWSDASRLLSDMIERK-------------INPDVFTFSALIDAFV 951

Query: 291  KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
            K+  + +A++L+ +M  R I P +V YSSLI+G+C+  R+D+A+++F  + S+ C PD  
Sbjct: 952  KEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVV 1011

Query: 351  SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN--------------SCILEAAELFRT 396
            +YNTLI  + K ++VEE + ++ EM   G+  +                C + A E+F+ 
Sbjct: 1012 TYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDM-AQEIFKE 1070

Query: 397  LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
            + +     ++  +N L+DGLCK+ +L  A  +F+ L R   EP + TY +MI G+C  G 
Sbjct: 1071 MVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 1130

Query: 457  IEKAYDLLPDMEEK 470
            +E  +DL  ++  K
Sbjct: 1131 VEDGWDLFCNLSLK 1144



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 174/353 (49%), Gaps = 40/353 (11%)

Query: 62   KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
            K G+ +L  A    N M   +  P +  +N+++  L   K+  + + L + + T G+ P+
Sbjct: 847  KRGDTDL--AFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPN 904

Query: 122  FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             V+ + L++C C     SDA   L  ++ +  +PDV T   LI     +GK  EA  L+ 
Sbjct: 905  VVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYD 964

Query: 182  KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
            + V    + ++ P+++ Y+S+I+G C    +++ + +F  M  +  +PD   YN+LI+ +
Sbjct: 965  EMV----KRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGF 1020

Query: 242  CCAVNWEDA----------------------------KGNTSAALELHEEFVNGNGELGV 273
            C     E+                              G+   A E+ +E V+     GV
Sbjct: 1021 CKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSD----GV 1076

Query: 274  ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
               P++++Y ++++ LCK+  ++KA  +F  ++   + P +  Y+ +I+G C  G+++D 
Sbjct: 1077 --PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG 1134

Query: 334  RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC 386
              LF ++  +G  PD  +YNT+I+ + +    EEA +L+ EM   G  P++ C
Sbjct: 1135 WDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGC 1187



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 106/434 (24%), Positives = 192/434 (44%), Gaps = 73/434 (16%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           AL     M+ +   P   +  SL+     +    + + L +++  IG  PD V+ N +++
Sbjct: 242 ALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIID 301

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
             CK   V+DAF     I RK   P+VVT   L+ GLC   ++++A+ L +  +     P
Sbjct: 302 SLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITP 361

Query: 191 NVI-------------------------------PNVICYASIIDGLCKDGFVNKVRVLF 219
           NVI                               P+++ Y+S+I+GLC    +++   +F
Sbjct: 362 NVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMF 421

Query: 220 LDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK------------GNT------------S 255
             M  +G   D   YN+LI  +C A   ED               NT            +
Sbjct: 422 DLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQA 481

Query: 256 AALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV 315
             ++  +EF +     G+   PD+ +Y  ++  LC +  ++KA  +F DM+ R +  D+V
Sbjct: 482 GDVDKAQEFFSQMDFFGI--SPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIV 539

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
            Y+++I G C  G++++A  LF S+  +G  PD  +Y T+++       + E  +LY +M
Sbjct: 540 TYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKM 599

Query: 376 ISMGVRPDNSCILE------AAELFRTLHNTKFELDLTVFNCLVDGLCK-------SWRL 422
              G+   N C L       +AEL + + +  +   L     +  G+CK       ++  
Sbjct: 600 KQEGLMK-NDCTLSDGDITLSAELIKKMLSCGYAPSL--LKDIKSGVCKKALSLLRAFSG 656

Query: 423 RSAWELFKKLPRYG 436
           +++++  +KL R G
Sbjct: 657 KTSYDYREKLSRNG 670



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 122/507 (24%), Positives = 210/507 (41%), Gaps = 82/507 (16%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +++ A  FF+ M     +P + ++N LLG L         + + E +    +  D V+  
Sbjct: 483 DVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYT 542

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK---- 182
            ++   CK   V +A+     +  K   PD+VT   ++ GLC +G   E   L+TK    
Sbjct: 543 TVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQE 602

Query: 183 -FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
             +  DC  +   ++   A +I  +   G+      L  D+K  G+   A    SL+R +
Sbjct: 603 GLMKNDCTLS-DGDITLSAELIKKMLSCGYAPS---LLKDIKS-GVCKKAL---SLLRAF 654

Query: 242 CCAVNW---EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK----DVL 294
               ++   E    N  + L+L +        +     P ++ +  +++++ K    DV+
Sbjct: 655 SGKTSYDYREKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVV 714

Query: 295 VDKAKEL-------------------------------FLDMKSRGIIPDVVVYSSLIDG 323
           +   +++                                  M   G  P++V  SSL++G
Sbjct: 715 ISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNG 774

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           YC   RI +A  L   +   G  P+T ++NTLI+      K  EA++L   M++ G +PD
Sbjct: 775 YCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPD 834

Query: 384 ---NSCILE----------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
                 ++           A  L   +   K E  + ++N ++DGLCK   +  A  LFK
Sbjct: 835 LVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFK 894

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM-EEKIR----------------- 472
           ++   G  PNVVTY+ +I  LC  G    A  LL DM E KI                  
Sbjct: 895 EMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEG 954

Query: 473 ECLKAIELLHKMAKRYVKPDEITVSIL 499
           + ++A +L  +M KR + P  +T S L
Sbjct: 955 KLVEAEKLYDEMVKRSIDPSIVTYSSL 981



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 138/303 (45%), Gaps = 37/303 (12%)

Query: 65   EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL----- 119
            E +L +A   ++ M+     P + +++SL          +N  C+ +RL+    +     
Sbjct: 953  EGKLVEAEKLYDEMVKRSIDPSIVTYSSL----------INGFCMHDRLDEAKQMFEFMV 1002

Query: 120  -----PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFT 174
                 PD V+ N L+  FCK   V +       + ++    + VT   LI+GL   G   
Sbjct: 1003 SKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCD 1062

Query: 175  EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVY 234
             A  +F + V+      V PN++ Y +++DGLCK+G + K  V+F  ++   + P  + Y
Sbjct: 1063 MAQEIFKEMVS----DGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTY 1118

Query: 235  NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294
            N +I   C A   ED            + F N + + GV   PDV++Y ++I+  C+   
Sbjct: 1119 NIMIEGMCKAGKVEDG----------WDLFCNLSLK-GV--KPDVVAYNTMISGFCRKGS 1165

Query: 295  VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
             ++A  LF +MK  G +P+   Y++LI      G  + + +L   + S G   D S+   
Sbjct: 1166 KEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGL 1225

Query: 355  LIN 357
            + N
Sbjct: 1226 VTN 1228


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 159/504 (31%), Positives = 250/504 (49%), Gaps = 76/504 (15%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++DA+  FN M+ M+ TP +  F  +LG+L   K++   I LS+++   G+ PD V+L+I
Sbjct: 113 VHDAVSQFNGMLLMRNTPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSI 172

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+NCFC +  ++ +F  LG+IL+  + P+ + L  L++GLC++G+  ++     K VA  
Sbjct: 173 LINCFCHLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQG 232

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
            + N +                               P+V+ Y +IIDGLCKD  VN+  
Sbjct: 233 FQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAY 292

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
             + +M  RGI+PD   Y++LI  +C A       G    A  L  E    N       +
Sbjct: 293 DFYTEMNSRGIFPDVITYSTLICGFCLA-------GQLMGAFSLLNEMTLKN------IN 339

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PDV +Y  +I++LCK+  + +AK L   M   G+ P+VV YS+L+DGYCL+G + +A+++
Sbjct: 340 PDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQI 399

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC- 386
           F ++      P   SYN +IN   K + V+EA++L  EM+   V P         D  C 
Sbjct: 400 FHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCK 459

Query: 387 ---ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
              I  A +L + LH+     D+  +  L+DGLCK+  L  A  LF K+   G +PN  T
Sbjct: 460 SGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYT 519

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEK----------------IRECL--KAIELLHKMA 485
           YT +I GLC    ++ A  L   +  K                 +E +  +A+ +  KM 
Sbjct: 520 YTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALAMKSKME 579

Query: 486 KRYVKPDEITVS-ILEELLNKDEN 508
                PD +T   I+  L  KDEN
Sbjct: 580 DNGCIPDAVTFEIIIRSLFEKDEN 603



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 173/364 (47%), Gaps = 30/364 (8%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V  N +++  CK   V++A+     +  +   PDV+T   LI G C+ G+   A  L
Sbjct: 270 PDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSL 329

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             +        N+ P+V  Y  +ID LCK+G + + + L   M   G+ P+   Y++L+ 
Sbjct: 330 LNEMTL----KNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMD 385

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            YC      +AK    A ++                +P V SY  +IN LCK   VD+A 
Sbjct: 386 GYCLVGEVHNAKQIFHAMVQTE-------------VNPSVCSYNIMINGLCKGKSVDEAM 432

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            L  +M  + ++P+ V Y+SLIDG C  GRI  A  L   +   G   D  +Y +L++  
Sbjct: 433 NLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGL 492

Query: 360 SKIEKVEEALSLYGEMISMGVRP---------DNSC----ILEAAELFRTLHNTKFELDL 406
            K + +++A++L+ +M   G++P         D  C    +  A +LF+ +      +D+
Sbjct: 493 CKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDV 552

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             +N ++ GLCK   L  A  +  K+   G  P+ VT+ ++I  L  +   +KA  LL +
Sbjct: 553 YTYNVMIGGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHE 612

Query: 467 MEEK 470
           M  K
Sbjct: 613 MIAK 616



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 157/362 (43%), Gaps = 79/362 (21%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P +  +N+++  L   K           +N+ G+ PD ++ + L+  FC    +  AF  
Sbjct: 270 PDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSL 329

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI----------- 193
           L  +  K  +PDV T   LI  LC +GK  EA  L         +PNV+           
Sbjct: 330 LNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCL 389

Query: 194 --------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233
                               P+V  Y  +I+GLCK   V++   L  +M  + + P+   
Sbjct: 390 VGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVT 449

Query: 234 YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDV 293
           YNSLI   C         G  ++AL+L +E ++  G+       DV++Y S+++ LCK+ 
Sbjct: 450 YNSLIDGLC-------KSGRITSALDLMKE-LHHRGQPA-----DVITYTSLLDGLCKNQ 496

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI------------- 340
            +DKA  LF+ MK RGI P+   Y++LIDG C   R+ +A+KLF  I             
Sbjct: 497 NLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYN 556

Query: 341 ----------------------ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
                                 E  GCIPD  ++  +I S  + ++ ++A  L  EMI+ 
Sbjct: 557 VMIGGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMIAK 616

Query: 379 GV 380
           G+
Sbjct: 617 GL 618



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 109/227 (48%), Gaps = 17/227 (7%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P   S NI++N  CK   V +A   L  +L K   P+ VT   LI GLC  G+ T A  L
Sbjct: 410 PSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDL 469

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             K +    +P    +VI Y S++DGLCK+  ++K   LF+ MK RGI P+ + Y +LI 
Sbjct: 470 M-KELHHRGQP---ADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALID 525

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C     ++A+      L      V G       C  DV +Y  +I  LCK+ ++D+A 
Sbjct: 526 GLCKGARLKNAQKLFQHIL------VKG-------CCIDVYTYNVMIGGLCKEGMLDEAL 572

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
            +   M+  G IPD V +  +I         D A KL   + ++G +
Sbjct: 573 AMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGLL 619



 Score = 43.1 bits (100), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 35/50 (70%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166
           G++P+ V+L+IL+NC   +  ++ +F  LG+IL+  + P+ +TL  L++G
Sbjct: 6   GIVPNLVTLSILINCLRHLGQMAFSFSVLGKILKLGYQPNSITLTTLMKG 55


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 147/444 (33%), Positives = 227/444 (51%), Gaps = 57/444 (12%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+DAL  FN M+HM P P    F  LL ++A  K+Y   + LS ++++ G+ PD  +LNI
Sbjct: 93  LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNI 152

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N FC +  +  AF  L ++L+    PD  T   LIRGLC++GK  EA  LF K +   
Sbjct: 153 LINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEG 212

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
            +P+V+                               PNVI Y +IID LCKD  V +  
Sbjct: 213 FQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAF 272

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            LF +M  +GI PD F YNSLI   C    W+           L  E VN          
Sbjct: 273 NLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVT-------TLLNEMVNSK------IM 319

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+V+ + +++++LCK+ ++  A ++   M  RG+ PDVV Y++L+DG+CL   +D+A K+
Sbjct: 320 PNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKV 379

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCI----- 387
           F ++  +GC+P+  SYN LIN Y +I+++++A+ L  +M   G+  D    N+ I     
Sbjct: 380 FDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCH 439

Query: 388 ----LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                 A  LF  +  +    DL  +  L+D LCK+  L  A  L K +     + +++ 
Sbjct: 440 VGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILV 499

Query: 444 YTVMICGLCIEGGIEKAYDLLPDM 467
           Y + I G+C  G +E A DL  ++
Sbjct: 500 YNIAIDGMCRAGELEAARDLFSNL 523



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 153/337 (45%), Gaps = 44/337 (13%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P+ + +  ++  + K    + V  L   M   GI PD +  N LI  +C       A   
Sbjct: 110 PSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSV 169

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
            +  L+L              C PD  ++ ++I  LC +  + +A  LF      G  PD
Sbjct: 170 LAKLLKLG-------------CQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPD 216

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           VV Y +L++G C +G    A +L  S+  + C P+  +YNT+I+S  K  +V EA +L+ 
Sbjct: 217 VVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFS 276

Query: 374 EMISMGVRPD----NSCIL---------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           EMI+ G+ PD    NS I              L   + N+K   ++ VF+ +VD LCK  
Sbjct: 277 EMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEG 336

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK---------- 470
            +  A ++   + + G EP+VVTYT ++ G C+   +++A  +   M  K          
Sbjct: 337 MIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYN 396

Query: 471 --------IRECLKAIELLHKMAKRYVKPDEITVSIL 499
                   I+   KA+ LL +M+ + +  D +T + L
Sbjct: 397 ILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTL 433



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 148/340 (43%), Gaps = 32/340 (9%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E ++ +AL  F+  I     P + ++ +L+  L         I L   +      P+ ++
Sbjct: 195 EGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIA 254

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N +++  CK   V++AF     ++ K  SPD+ T   LI  LC   ++   + L  + V
Sbjct: 255 YNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMV 314

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
                  ++PNV+ +++++D LCK+G +     +   M  RG+ PD   Y +L+  +C  
Sbjct: 315 ----NSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLR 370

Query: 245 VNWEDA---------KGNTSAALELHEEFVNGNGEL----------------GVICHPDV 279
              ++A         KG     +  +   +NG  ++                G+I   D 
Sbjct: 371 SEMDEAVKVFDTMVHKG-CVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLI--ADT 427

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           ++Y ++I+ LC    +  A  LF +M + G IPD+V Y  L+D  C    + +A  L  +
Sbjct: 428 VTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKA 487

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           IE      D   YN  I+   +  ++E A  L+  +   G
Sbjct: 488 IEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSCQG 527



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 88/211 (41%), Gaps = 39/211 (18%)

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           P  V ++ L+     M        L   ++S G  PD  + N LINS+  + ++  A S+
Sbjct: 110 PSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSV 169

Query: 372 YGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
             +++ +G +PDN                      T FN L+ GLC   ++  A  LF K
Sbjct: 170 LAKLLKLGCQPDN----------------------TTFNTLIRGLCVEGKIGEALHLFDK 207

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKP 491
               G +P+VVTY  ++ GLC                 K+     AI LL  M ++  +P
Sbjct: 208 TIGEGFQPDVVTYGTLMNGLC-----------------KVGNTSAAIRLLRSMVQKNCRP 250

Query: 492 DEITVSILEELLNKDENCHECMNLLPSFLSR 522
           + I  + + + L KD    E  NL    +++
Sbjct: 251 NVIAYNTIIDSLCKDRQVTEAFNLFSEMITK 281


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 161/524 (30%), Positives = 263/524 (50%), Gaps = 85/524 (16%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           M+ ++  P +  F  +LG+L   K+Y   I LS+++   G++PD V+L+IL+NCFC +  
Sbjct: 1   MLLLRHIPPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQ 60

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI---- 193
           ++ +F  LG+IL+  + P+ + L  L++GLC++G+  ++     K VA   + + +    
Sbjct: 61  MAFSFSVLGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGI 120

Query: 194 ---------------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
                                      P+V+ Y++IIDGLCKD  V++   L+ +M  RG
Sbjct: 121 LLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARG 180

Query: 227 IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII 286
           I+PD   Y +LI  +C A       G    A  L  E +  N       +P++ +Y ++I
Sbjct: 181 IFPDVITYTTLICGFCLA-------GQLMEAFGLLNEMILKN------INPNIYTYNTLI 227

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           ++LCK+  V ++K L   M  +G+ PDVV+YS L+DGYCL+G +  A+++F+ +   G  
Sbjct: 228 DTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVN 287

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAEL 393
           PD  SYN +IN   K ++V+EA++L  EM+   + PD                I    +L
Sbjct: 288 PDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDL 347

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
            + +H+     +L  +N L+DGLCK+  L  A  LF K+   G +PN  TYT +I GLC 
Sbjct: 348 TKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCK 407

Query: 454 EGGIEKAYDLLPDMEEK----------------IRECL--KAIELLHKMAKRYVKPDEIT 495
            G ++K   L   +  K                 +E +  +A+ +  KM      P+ +T
Sbjct: 408 GGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNGCIPNAVT 467

Query: 496 VS-ILEELLNKDEN------CHECM--NLLPSFLSRNQEESKLT 530
              I+  LL KDEN       HE +   LLP F + + E S +T
Sbjct: 468 FEIIIRSLLEKDENDKAEKLLHEMIAKGLLP-FRNFHSERSSVT 510



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 113/247 (45%), Gaps = 19/247 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGAL-AGKKYYVNFICLSERLNTIGLLPDFVSL 125
           E+  A   F  M+     P + S+N ++  L  GK+       L E L+   ++PD V+ 
Sbjct: 270 EVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHK-NMIPDTVTY 328

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           + L++  CK+  ++        +  +    ++VT   L+ GLC      +A  LF K   
Sbjct: 329 SSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMK- 387

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
                 + PN   Y ++IDGLCK G + K + LF  +  +G   D + Y  +I   C   
Sbjct: 388 ---ERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLC--- 441

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
                +G    AL +  +  + NG     C P+ +++  II SL +    DKA++L  +M
Sbjct: 442 ----KEGMFDEALAMKSKMED-NG-----CIPNAVTFEIIIRSLLEKDENDKAEKLLHEM 491

Query: 306 KSRGIIP 312
            ++G++P
Sbjct: 492 IAKGLLP 498


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 153/522 (29%), Positives = 255/522 (48%), Gaps = 75/522 (14%)

Query: 63  SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF 122
           S ++ ++DAL  F  M+ M P P +  F   LG++A KK Y + + L  +++  G+  + 
Sbjct: 72  SNDISIDDALTSFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNV 131

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
            SLN+L+NC C++  V  A   +G++ +    PD +T   LI GLC +GK  EA GLF +
Sbjct: 132 YSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNE 191

Query: 183 FVAFDCRPNVI-------------------------------PNVICYASIIDGLCKDGF 211
            V     PNVI                               PNV+ Y +IID LCKD  
Sbjct: 192 MVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRL 251

Query: 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGEL 271
           VN+      +M  RGI PD   YN+++  +C       + G  + A  L +E V  N   
Sbjct: 252 VNEAVEFLSEMVDRGIPPDVVTYNTILHGFC-------SLGQLNEATRLFKEMVGRN--- 301

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
                PD +++  +++ LCK+ +V +A+ +   M  +G  P+   Y++L+DGYCL  ++D
Sbjct: 302 ---VMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMD 358

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---SCIL 388
           +A K+   +  +GC P+ SSYN LIN Y K +++ EA  L  EM    + PD    S ++
Sbjct: 359 EAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLM 418

Query: 389 ----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
                     EA  LF+ + ++    DL  ++ L+DG CK   L  A +L K++     +
Sbjct: 419 QGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIK 478

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLL---------PD-------MEEKIRECL--KAIEL 480
           PN++ YT++I G+ I G +E A +L          PD       ++  ++E L  +A E 
Sbjct: 479 PNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEF 538

Query: 481 LHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
             KM      PD  + +++ +   ++++    + L+   + +
Sbjct: 539 FRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGK 580



 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 130/492 (26%), Positives = 233/492 (47%), Gaps = 72/492 (14%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N    E ++ +A+  FN M+     P + S+N+++  L      +  + +  ++      
Sbjct: 174 NGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGK 233

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ V+ N +++  CK   V++A   L  ++ +   PDVVT   ++ G C  G+  EA+ L
Sbjct: 234 PNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRL 293

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F + V      NV+P+ + +  ++DGLCK+G V++ R +   M  +G  P+A+ YN+L+ 
Sbjct: 294 FKEMVG----RNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMD 349

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI----CHPDVLSYCSIINSLCKDVLV 295
            YC                 LH +       LG++    C P++ SY  +IN  CK   +
Sbjct: 350 GYC-----------------LHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRM 392

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           ++AK L  +M  + + PD V YS+L+ G C +GR  +A  LF  + S G +PD  +Y+ L
Sbjct: 393 NEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSIL 452

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDG 415
           ++ + K   ++EAL L  EM                      H  + + ++ ++  L+ G
Sbjct: 453 LDGFCKHGHLDEALKLLKEM----------------------HERRIKPNIILYTILIRG 490

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------ 469
           +  + +L  A ELF KL   G  P++ TY VMI GL  EG  ++AY+    ME+      
Sbjct: 491 MFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPD 550

Query: 470 ------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLP 517
                       + ++   AI+L+ +M  +    D  T  +L +L + DE       ++ 
Sbjct: 551 SCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQMLLDLESHDE-------IIS 603

Query: 518 SFLSRNQEESKL 529
            F+  + + +K+
Sbjct: 604 RFMRGSSQHTKM 615



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 99/241 (41%), Gaps = 39/241 (16%)

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           +C   ++   D+ +D A   F  M      P VV +   +       +   A  L   ++
Sbjct: 64  HCGFGSNTSNDISIDDALTSFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMD 123

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK 401
             G   +  S N LIN   ++  V+ A+S+ G+M  +G++PD                  
Sbjct: 124 LFGVTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPD------------------ 165

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
                  FN L++GLC   +++ A  LF ++   G EPNV++Y  +I GLC  G      
Sbjct: 166 ----AITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNG------ 215

Query: 462 DLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
                        + A+ +  KM +   KP+ +T + + + L KD   +E +  L   + 
Sbjct: 216 -----------NTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVD 264

Query: 522 R 522
           R
Sbjct: 265 R 265


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 162/525 (30%), Positives = 249/525 (47%), Gaps = 79/525 (15%)

Query: 40  HSNSVSTVEEKTKLLKY---LSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGA 96
           H  + ST  +   L K     + NS S  + ++DAL  F  M  M P P +  F   LG+
Sbjct: 44  HHITTSTFTKNPSLPKKNGGFASNS-SNTISVDDALASFYRMARMNPRPSIVEFGKFLGS 102

Query: 97  LAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPD 156
           +A  K Y   + L  +++  G+     SLNIL+NC C++  V  A    G++ +    PD
Sbjct: 103 IAKMKQYSTVVYLCNQMDLFGVTHTVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPD 162

Query: 157 VVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI----------------------- 193
           V+T   LI G+C +GK   A  L+ + V     P+VI                       
Sbjct: 163 VITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFK 222

Query: 194 --------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
                   PNV+ Y +IID LCKD  VN       +M GRGI PDA  YNS++   CC  
Sbjct: 223 KMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCL- 281

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
                 G  + A  L +  +  NG     C PDV++Y  II+SL KD LV+ A +   +M
Sbjct: 282 ------GQLNEATRLFKR-MEQNG-----CKPDVVTYNIIIDSLYKDRLVNDAADFLSEM 329

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
             +GI PDVV Y++++ G C +G++++A +LF  +E +GC PD  +YNT+I+S  K   V
Sbjct: 330 VDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLV 389

Query: 366 EEALSLYGEMISMGVRPDN---SCIL----------EAAELFRTLHNTKFELDLTVFNCL 412
            +A+    EM+  G+ P+    S IL          EA +LF+ +       +   F+ L
Sbjct: 390 NDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSIL 449

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL-------- 464
           VDGLC+   +  A  +F+ +   G EPN+ TY  ++ G C+   + +A  +         
Sbjct: 450 VDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGC 509

Query: 465 -PDMEE---------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
            PD+             R   KA  LL +M+ + + P+ +T + +
Sbjct: 510 APDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTI 554



 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 128/450 (28%), Positives = 218/450 (48%), Gaps = 60/450 (13%)

Query: 36  PSSLHSNSV-------STVEEKTKLLKYLSENSKSGEVE--------------LNDALCF 74
           P ++  NS+         + E T+L K + +N    +V               +NDA  F
Sbjct: 266 PDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADF 325

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
            + M+     P + ++ ++L  L         I L +++   G  PD V+ N +++  CK
Sbjct: 326 LSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCK 385

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
              V+DA   L  ++ +   P+ VT   ++ G C  G+  EA+ LF + V      NV+P
Sbjct: 386 DRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVG----RNVMP 441

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           N + ++ ++DGLC++G V++ R +F  M  +G+ P+ + YN+L+  YC      +A+   
Sbjct: 442 NTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEAR--- 498

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
               ++ E  V G G     C PD+ SY  +IN  C    +DKAK L   M  + + P+ 
Sbjct: 499 ----KVFEIMV-GKG-----CAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNT 548

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           V Y++++ G C +GR+ DA++LF  + S G +P   +Y+ L+N   K   ++EAL     
Sbjct: 549 VTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEAL----- 603

Query: 375 MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
                            +LF+++   K E D+ ++  L++G+    +L  A  LF KL  
Sbjct: 604 -----------------KLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSA 646

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            G +P   TY VMI GL  EG  ++AY+L 
Sbjct: 647 DGIQPPGRTYNVMIKGLLKEGLSDEAYELF 676



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 134/479 (27%), Positives = 221/479 (46%), Gaps = 47/479 (9%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N    E ++  A+  +N M+     P + S+N+L+  L         + + +++   G  
Sbjct: 171 NGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCK 230

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ V+ N +++  CK   V+DA   L  ++ +   PD +T   ++ GLC  G+  EA+ L
Sbjct: 231 PNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRL 290

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F +     C+P+V+     Y  IID L KD  VN       +M  +GI PD   Y +++ 
Sbjct: 291 FKRMEQNGCKPDVV----TYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILH 346

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C         G  + A+ L ++           C PDV++Y +II+SLCKD LV+ A 
Sbjct: 347 GLCYL-------GQLNEAIRLFKKMEQKG------CKPDVVAYNTIIDSLCKDRLVNDAM 393

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           E   +M  RGI P+ V YS+++ G+C +G++D+A +LF  +     +P+T +++ L++  
Sbjct: 394 EFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGL 453

Query: 360 SKIEKVEEALSLYGEMISMGVRP---------DNSCIL----EAAELFRTLHNTKFELDL 406
            +   V EA  ++  M   GV P         +  C+     EA ++F  +       DL
Sbjct: 454 CQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDL 513

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             +N L++G C S R+  A  L  ++      PN VTY  ++ GLC  G +         
Sbjct: 514 HSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRL--------- 564

Query: 467 MEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQE 525
                   L A EL  KM    + P  +T SIL   L K  +  E + L  S   +  E
Sbjct: 565 --------LDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLE 615



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 134/274 (48%), Gaps = 32/274 (11%)

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
           +LG+   PDV+++ ++IN +C +  +  A EL+ +M   G  PDV+ Y++LI+G C  G 
Sbjct: 156 KLGI--QPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGN 213

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NS 385
            + A  +F  +E  GC P+  +YNT+I+S  K   V +A+    EM+  G+ PD    NS
Sbjct: 214 TNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNS 273

Query: 386 CIL---------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
            +          EA  LF+ +     + D+  +N ++D L K   +  A +   ++   G
Sbjct: 274 IVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQG 333

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITV 496
             P+VVTYT ++ GLC  G + +A                 I L  KM ++  KPD +  
Sbjct: 334 IPPDVVTYTTILHGLCYLGQLNEA-----------------IRLFKKMEQKGCKPDVVAY 376

Query: 497 SILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           + + + L KD   ++ M  L   + R    + +T
Sbjct: 377 NTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVT 410



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 91/190 (47%), Gaps = 17/190 (8%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  PD  S NIL+N +C    +  A   L ++  K  +P+ VT   +++GLC  G+  +A
Sbjct: 508 GCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDA 567

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             LF K     C   ++P ++ Y+ +++GLCK G +++   LF  MK + + PD  +Y  
Sbjct: 568 QELFKKM----CSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTI 623

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI         E AKG  S         ++ +G       P   +Y  +I  L K+ L D
Sbjct: 624 LIEGMFIGGKLEVAKGLFSK--------LSADG-----IQPPGRTYNVMIKGLLKEGLSD 670

Query: 297 KAKELFLDMK 306
           +A ELF   K
Sbjct: 671 EAYELFRKWK 680


>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 592

 Score =  239 bits (609), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 174/601 (28%), Positives = 287/601 (47%), Gaps = 112/601 (18%)

Query: 17  PSSSLRNSKKPISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVE-LNDALCFF 75
           PS +L      I L+S    S+  ++ + +   KT+ L ++    KSG+++ +++AL FF
Sbjct: 9   PSPALH-----IPLHSHCTKSTNINHEIQSHSNKTQFLNFMRNQCKSGKLKSIDEALNFF 63

Query: 76  NYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNT-IGLLPDFVSLNILMNCFCK 134
           + M  M P P +  F  LLG +   K+Y   I L + +++ +G+ PD   LN+++N  C 
Sbjct: 64  HTMAKMNPLPSVIDFTLLLGFIVKMKHYTTAISLVKEMHSSLGIKPDTFILNVVINSLCH 123

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTL---------------------------------- 160
           +  V+  F  LG +L+    P VVT                                   
Sbjct: 124 LKLVAFGFSVLGTMLKLGLEPSVVTFTILINGLCVKGDVGRAVELVDHVEKTGYRSDVKT 183

Query: 161 -GCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLF 219
            G LI GLC  GK +EA G   K        N  PNV+ Y++++DGLCKDG V++   L 
Sbjct: 184 YGVLINGLCKMGKTSEAVGWLRKME----ERNWNPNVVVYSTVMDGLCKDGLVSEALGLC 239

Query: 220 LDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDV 279
           L+M G+GI P+   Y  LI+  C    W++A         L +E +    ++GV+  PD+
Sbjct: 240 LEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAG-------SLLDEMM----KMGVM--PDL 286

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
            S   +++ LCK+  + +AK +   M   G +PDV  Y+SLID YCL  ++D+A ++F  
Sbjct: 287 QSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQNQMDEATRVFEL 346

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---------------- 383
           + S GC+PD  +Y +LI+ + KI+ + +A+ L  EMI +G  PD                
Sbjct: 347 MVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTTLIGGFCQVGR 406

Query: 384 --------------------NSCIL------------EAAELFRTLHNTKFELDLTVFNC 411
                                +C +            EA  LF  +  +  +L++ +++ 
Sbjct: 407 PLAAKELFLNMHKYGQVPNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSI 466

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI 471
           ++DG+C + +L +A ELF  LP  G + NV  YT+MI G   +G ++KA DLL +MEE  
Sbjct: 467 ILDGMCSAGKLNTALELFSCLPAKGLQINVYAYTIMINGFAKQGLLDKAEDLLSNMEE-- 524

Query: 472 RECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCH---ECMNLLPSFLSRNQEESK 528
             C+      +   +  V   EI  SI    + +D+          ++ ++LS NQ +++
Sbjct: 525 NGCMPDSCTYNVFVQGLVAEREIARSIKYLTMMRDKGFSVDATTTEMIINYLSTNQGDNE 584

Query: 529 L 529
           L
Sbjct: 585 L 585


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score =  238 bits (607), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 158/523 (30%), Positives = 259/523 (49%), Gaps = 79/523 (15%)

Query: 66  VELNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIGLLPDFV 123
           +++++ +  FN+++  +PT  +  FN +LG+L  +   +Y   I LS RL   G+ PD  
Sbjct: 45  IDVDNVVSSFNHLLRTKPTSSIIEFNKILGSLVKSNNNHYPTAISLSRRLEFHGITPDIF 104

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           + NIL+NC+C M  ++ AF  + +IL+  + PD +T   LI+GLC+ GK  EA       
Sbjct: 105 TFNILINCYCHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLNGKVKEALHFHDHV 164

Query: 184 VAFDCRPN-------------------------------VIPNVICYASIIDGLCKDGFV 212
           +A     +                               V  NV+ Y +IID LCK   V
Sbjct: 165 LALGFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLV 224

Query: 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
                L+  M  + I PD   +++LI  +C     E+A G       L  E V  N    
Sbjct: 225 IDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFG-------LFREMVLKN---- 273

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
              +PD  ++  ++++LCK+  +  AK + + M   G++P+VV YSSL+DGYCL+ +++ 
Sbjct: 274 --INPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNK 331

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSC-- 386
           A+ +  +I   G  P+  SY T+IN + KI+ V+EALSL+ +M   G+ PD    NS   
Sbjct: 332 AKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLID 391

Query: 387 -------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
                  I  A EL   +H+     ++  +NCL+D LCK+  +  A  L KK+   G +P
Sbjct: 392 GLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQP 451

Query: 440 NVVTYTVMICGLCIEGGIEKAYDLLPDMEEK----------------IRECL--KAIELL 481
           ++ T+ ++I GLC  G ++ A D+  D+  K                 +E L  +A  LL
Sbjct: 452 DMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALL 511

Query: 482 HKMAKRYVKPDEITV-SILEELLNKDENCHECMNLLPSFLSRN 523
            KM    + PD +T  ++++ L +KDEN  +   LL   ++R+
Sbjct: 512 SKMDDNGIIPDAVTYETLIQALFHKDEN-EKAEKLLREMIARD 553



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 155/346 (44%), Gaps = 52/346 (15%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DA   ++ MI  + +P + +F++L+              L   +    + PD+ + NIL+
Sbjct: 226 DAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILV 285

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           +  CK   +  A   L  ++++   P+VVT   L+ G C+  +  +A  +         +
Sbjct: 286 DALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTI----SQ 341

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
               PN   Y ++I+G CK   V++   LF DM+ +GI PD   YNSLI   C       
Sbjct: 342 MGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLC------- 394

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
             G  S A EL +E ++ NG+       ++ +Y  +I++LCK+  VD+A  L   +K +G
Sbjct: 395 KSGRISYAWELVDE-MHDNGQ-----PANIFTYNCLIDALCKNHHVDQAIALVKKIKDQG 448

Query: 310 IIPDVVVYSSLIDGYCLMGRI-----------------------------------DDAR 334
           I PD+  ++ LI G C +GR+                                   D+A 
Sbjct: 449 IQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAE 508

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
            L   ++  G IPD  +Y TLI +    ++ E+A  L  EMI+  V
Sbjct: 509 ALLSKMDDNGIIPDAVTYETLIQALFHKDENEKAEKLLREMIARDV 554



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 102/227 (44%), Gaps = 35/227 (15%)

Query: 113 LNTI---GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCM 169
           LNTI   G  P+  S   ++N FCK+  V +A      +  K  +PD VT   LI GLC 
Sbjct: 336 LNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCK 395

Query: 170 QGKFTEASGLFTKFVAFDCRPNVIP-NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
            G+ + A  L  +        N  P N+  Y  +ID LCK+  V++   L   +K +GI 
Sbjct: 396 SGRISYAWELVDEM-----HDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQ 450

Query: 229 PDAFVYNSLIRVYCCAVNWEDA---------KGNTSAALELH---------------EEF 264
           PD + +N LI   C     ++A         KG +  A   +               E  
Sbjct: 451 PDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEAL 510

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
           ++   + G+I  PD ++Y ++I +L      +KA++L  +M +R ++
Sbjct: 511 LSKMDDNGII--PDAVTYETLIQALFHKDENEKAEKLLREMIARDVV 555


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  238 bits (607), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 144/478 (30%), Positives = 242/478 (50%), Gaps = 70/478 (14%)

Query: 41  SNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGK 100
           S+SVS  + + +L K     ++  +++LNDA+  F+ M+  +P P +  FN LL A+   
Sbjct: 44  SSSVSGGDLRERLSK-----TRLRDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKL 98

Query: 101 KYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTL 160
           K Y   I L +++  +G+  D  + NI++NCFC    VS A   LG++L+  + PD VT+
Sbjct: 99  KKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTI 158

Query: 161 GCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFL 220
           G L+ G C + + ++A  L  K V    +P+++     Y +IID LCK   VN     F 
Sbjct: 159 GSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVA----YNAIIDSLCKTKRVNDAFDFFK 214

Query: 221 DMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVL 280
           +++ +GI P+   Y +L+   C +  W DA    S  ++                 P+V+
Sbjct: 215 EIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKK-------------ITPNVI 261

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
           +Y +++++  K+  V +AKELF +M    I PD+V YSSLI+G CL  RID+A ++F  +
Sbjct: 262 TYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLM 321

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS----------------------- 377
            S+GC+ D  SYNTLIN + K ++VE+ + L+ EM                         
Sbjct: 322 VSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDV 381

Query: 378 ------------MGVRP-------------DNSCILEAAELFRTLHNTKFELDLTVFNCL 412
                        G+ P             DN  + +A  +F  +   + +LD+  +  +
Sbjct: 382 DKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTV 441

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           + G+CK+ ++  AW LF  L   G +P++VTYT M+ GLC +G + +   L   M+++
Sbjct: 442 IRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQE 499



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 168/378 (44%), Gaps = 58/378 (15%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           AL     M+ +   P   +  SL+     +    + + L +++  IG  PD V+ N +++
Sbjct: 139 ALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIID 198

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
             CK   V+DAF     I RK   P+VVT   L+ GLC   ++++A+ L +  +     P
Sbjct: 199 SLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITP 258

Query: 191 NVI-------------------------------PNVICYASIIDGLCKDGFVNKVRVLF 219
           NVI                               P+++ Y+S+I+GLC    +++   +F
Sbjct: 259 NVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMF 318

Query: 220 LDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK------------GNT------------S 255
             M  +G   D   YN+LI  +C A   ED               NT            +
Sbjct: 319 DLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQA 378

Query: 256 AALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV 315
             ++  +EF +     G+   PD+ +Y  ++  LC +  ++KA  +F DM+ R +  D+V
Sbjct: 379 GDVDKAQEFFSQMDFFGI--SPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIV 436

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
            Y+++I G C  G++++A  LF S+  +G  PD  +Y T+++       + E  +LY +M
Sbjct: 437 TYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKM 496

Query: 376 ISMGVRPDNSCILEAAEL 393
              G+   N C L   ++
Sbjct: 497 KQEGLMK-NDCTLSDGDI 513



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 93/232 (40%), Gaps = 39/232 (16%)

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           +D+ ++ A +LF DM      P +V ++ L+     + + D    L   +E  G   D  
Sbjct: 62  RDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLY 121

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFN 410
           ++N +IN +    +V  ALS+ G+M+ +G  PD   I                       
Sbjct: 122 TFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTI----------------------G 159

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            LV+G C+  R+  A  L  K+   G +P++V Y  +I  LC    +  A+D   ++E K
Sbjct: 160 SLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERK 219

Query: 471 IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
                             ++P+ +T + L   L       +   LL   + +
Sbjct: 220 -----------------GIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKK 254


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  238 bits (606), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 140/485 (28%), Positives = 236/485 (48%), Gaps = 80/485 (16%)

Query: 59  ENSKSGEVEL--NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           E  +SG V++  +DA+  F  MI  +P P +  F+    A+A  K +   +   ++L   
Sbjct: 48  ERLRSGIVDIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELN 107

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+  +  +LNI++NCFC+      A+  LG++++  + PD  T   LI+GL ++GK +EA
Sbjct: 108 GIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEA 167

Query: 177 SGLFTKFVAFDCRPNVI-------------------------------PNVICYASIIDG 205
             L  + V   C+P+V+                                +V  Y++IID 
Sbjct: 168 VVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDS 227

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA--------------- 250
           LC+DG ++    LF +M+ +GI      YNSL+R  C A  W D                
Sbjct: 228 LCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPN 287

Query: 251 -------------KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
                        +G    A EL++E +           P++++Y ++++  C    + +
Sbjct: 288 VITFNVLLDVFVKEGKLQEANELYKEMITRG------ISPNIITYNTLMDGYCMQNRLSE 341

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A  +   M      PD+V ++SLI GYC++ R+DD  K+F +I   G + +  +Y+ L+ 
Sbjct: 342 ANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQ 401

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFEL 404
            + +  K++ A  L+ EM+S GV PD             N  + +A E+F  L  +K +L
Sbjct: 402 GFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDL 461

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            + ++  +++G+CK  ++  AW LF  LP  G +PNV+TYTVMI GLC +G + +A  LL
Sbjct: 462 GIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILL 521

Query: 465 PDMEE 469
             MEE
Sbjct: 522 RKMEE 526



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 162/317 (51%), Gaps = 17/317 (5%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A+  F  M        + ++NSL+  L     + +   L + + +  ++P+ ++ N+
Sbjct: 234 IDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNV 293

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++ F K   + +A      ++ +  SP+++T   L+ G CMQ + +EA+ +    V   
Sbjct: 294 LLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 353

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C P+++     + S+I G C    V+    +F ++  RG+  +A  Y+ L++ +C     
Sbjct: 354 CSPDIVT----FTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFC----- 404

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               G    A EL +E V+     GV+  PDV++Y  +++ LC +  ++KA E+F D++ 
Sbjct: 405 --QSGKIKLAEELFQEMVSH----GVL--PDVMTYGILLDGLCDNGKLEKALEIFEDLQK 456

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
             +   +V+Y+++I+G C  G+++DA  LF S+  +G  P+  +Y  +I+   K   + E
Sbjct: 457 SKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSE 516

Query: 368 ALSLYGEMISMGVRPDN 384
           A  L  +M   G  P++
Sbjct: 517 ANILLRKMEEDGNAPND 533



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 22/179 (12%)

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
           D+  D A  LF +M     +P +V +S          + +        +E  G   +  +
Sbjct: 56  DIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYT 115

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNC 411
            N +IN + +  K   A S+ G+++ +G  PD                       T FN 
Sbjct: 116 LNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDT----------------------TTFNT 153

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           L+ GL    ++  A  L  ++   G +P+VVTY  ++ G+C  G    A DLL  MEE+
Sbjct: 154 LIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEER 212



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 14/102 (13%)

Query: 245 VNW--EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
           + W  EDA+ +    LEL  + V+     G +  P             + + V  A+EL 
Sbjct: 675 LTWGLEDAECDLMVDLELPTDAVHYAHRAGRMRRPG------------RKMTVVTAEELH 722

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
            +M  RGI P+ + YSSLIDG+C   R+D+A ++   + ++G
Sbjct: 723 KEMIQRGIAPNTITYSSLIDGFCKENRLDEANQMLDLMVTKG 764


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  238 bits (606), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 143/478 (29%), Positives = 242/478 (50%), Gaps = 70/478 (14%)

Query: 41  SNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGK 100
           S+SVS  + + +L K     ++  +++LNDA+  F+ M+  +P P +  FN LL A+   
Sbjct: 44  SSSVSGGDLRERLSK-----TRLRDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKL 98

Query: 101 KYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTL 160
           K Y   I L +++  +G+  D  + NI++NCFC    VS A   LG++L+  + PD VT+
Sbjct: 99  KKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTI 158

Query: 161 GCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFL 220
           G L+ G C + + ++A  L  K V    +P+++     Y +IID LCK   VN     F 
Sbjct: 159 GSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVA----YNAIIDSLCKTKRVNDAFDFFK 214

Query: 221 DMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVL 280
           +++ +GI P+   Y +L+   C +  W DA    S  ++                 P+V+
Sbjct: 215 EIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKK-------------ITPNVI 261

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
           +Y +++++  K+  V +AKELF +M    I PD+V YSSL++G CL  RID+A ++F  +
Sbjct: 262 TYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLM 321

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS----------------------- 377
            S+GC+ D  SYNTLIN + K ++VE+ + L+ EM                         
Sbjct: 322 VSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDV 381

Query: 378 ------------MGVRP-------------DNSCILEAAELFRTLHNTKFELDLTVFNCL 412
                        G+ P             DN  + +A  +F  +   + +LD+  +  +
Sbjct: 382 DKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTV 441

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           + G+CK+ ++  AW LF  L   G +P++VTYT M+ GLC +G + +   L   M+++
Sbjct: 442 IRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQE 499



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 168/378 (44%), Gaps = 58/378 (15%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           AL     M+ +   P   +  SL+     +    + + L +++  IG  PD V+ N +++
Sbjct: 139 ALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIID 198

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
             CK   V+DAF     I RK   P+VVT   L+ GLC   ++++A+ L +  +     P
Sbjct: 199 SLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITP 258

Query: 191 NVI-------------------------------PNVICYASIIDGLCKDGFVNKVRVLF 219
           NVI                               P+++ Y+S+++GLC    +++   +F
Sbjct: 259 NVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMF 318

Query: 220 LDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK------------GNT------------S 255
             M  +G   D   YN+LI  +C A   ED               NT            +
Sbjct: 319 DLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQA 378

Query: 256 AALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV 315
             ++  +EF +     G+   PD+ +Y  ++  LC +  ++KA  +F DM+ R +  D+V
Sbjct: 379 GDVDKAQEFFSQMDFFGI--SPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIV 436

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
            Y+++I G C  G++++A  LF S+  +G  PD  +Y T+++       + E  +LY +M
Sbjct: 437 TYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKM 496

Query: 376 ISMGVRPDNSCILEAAEL 393
              G+   N C L   ++
Sbjct: 497 KQEGLMK-NDCTLSDGDI 513



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 93/232 (40%), Gaps = 39/232 (16%)

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           +D+ ++ A +LF DM      P +V ++ L+     + + D    L   +E  G   D  
Sbjct: 62  RDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLY 121

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFN 410
           ++N +IN +    +V  ALS+ G+M+ +G  PD   I                       
Sbjct: 122 TFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTI----------------------G 159

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            LV+G C+  R+  A  L  K+   G +P++V Y  +I  LC    +  A+D   ++E K
Sbjct: 160 SLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERK 219

Query: 471 IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
                             ++P+ +T + L   L       +   LL   + +
Sbjct: 220 -----------------GIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKK 254


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 139/446 (31%), Positives = 219/446 (49%), Gaps = 68/446 (15%)

Query: 56  YLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNT 115
           ++S NS +  + ++DAL  F  M+ M P P +  F   LG+ A KK Y   + L  +++ 
Sbjct: 59  FVSNNSTN--ISIDDALASFYRMVRMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDL 116

Query: 116 IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
            G+  +  SLN+L+NC C++  V  A   LG++ +    P   T   LI GLC +GK  E
Sbjct: 117 FGVTHNVYSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKE 176

Query: 176 ASGLFTKFVAFDCRPNVI-------------------------------PNVICYASIID 204
           A  LF + V     PNVI                               P+V+ Y +IID
Sbjct: 177 AVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIID 236

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
            LCKD  VN       +M  RGI P+ F YN ++  +C         G  + A  L +E 
Sbjct: 237 SLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCIL-------GQLNEATRLFKEM 289

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           V      G    PD ++   +++ LCK+ +V +A+ +F  M  +G+ P++  Y++L+DGY
Sbjct: 290 V------GRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGY 343

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           CL   +++A+K+F  +  +GC P   SYN LIN + K  +++EA SL  EM    + PD 
Sbjct: 344 CLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDT 403

Query: 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
                                   ++ L+ GLC+  R + A  +FK++  YG  PN+VTY
Sbjct: 404 ----------------------VTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTY 441

Query: 445 TVMICGLCIEGGIEKAYDLLPDMEEK 470
           ++++ G C  G +++A  LL  M+EK
Sbjct: 442 SILLDGFCKHGHLDEALKLLKSMQEK 467



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 131/466 (28%), Positives = 225/466 (48%), Gaps = 57/466 (12%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N    E ++ +A+  FN M+     P + S+N+++  L         + + +++   G  
Sbjct: 166 NGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCK 225

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V+ N +++  CK   V+DA   L  +L +   P+V T  C++ G C+ G+  EA+ L
Sbjct: 226 PDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRL 285

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F + V  D    V+P+ +    ++DGLCK+G V++ R++F  M  +G+ P+   YN+L+ 
Sbjct: 286 FKEMVGRD----VMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMD 341

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            YC      +AK       ++ E  +         C P V SY  +IN  CK   +D+AK
Sbjct: 342 GYCLQRLMNEAK-------KVFEIMIRQG------CAPGVHSYNILINGFCKSRRMDEAK 388

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            L  +M  + + PD V YS+L+ G C  GR  +A  +F  + S G +P+  +Y+ L++ +
Sbjct: 389 SLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGF 448

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            K   ++EAL                      +L +++   K E ++     L++G+  +
Sbjct: 449 CKHGHLDEAL----------------------KLLKSMQEKKLEPNIVHHTILIEGMFIA 486

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE---------- 469
            +L  A ELF KL   G  P + TYTVMI GL  EG  ++AYDL   ME+          
Sbjct: 487 GKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSY 546

Query: 470 --------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDE 507
                   + ++   AI L+ +M  +    +  T  +L +L ++DE
Sbjct: 547 NVMIQGFLQNQDSSTAIRLIDEMVGKRFSANLSTFQMLLDLESQDE 592



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 139/304 (45%), Gaps = 19/304 (6%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  +++A   F  M      P + ++N+L+     ++       + E +   G  P   S
Sbjct: 311 EGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHS 370

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            NIL+N FCK   + +A   L  +  K  +PD VT   L++GLC  G+  EA  +F +  
Sbjct: 371 YNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEM- 429

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
              C   ++PN++ Y+ ++DG CK G +++   L   M+ + + P+   +  LI     A
Sbjct: 430 ---CSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIA 486

Query: 245 VNWEDAKGNTSAALELHEE-FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
              E AK       EL  + F +G         P + +Y  +I  L K+ L D+A +LF 
Sbjct: 487 GKLEVAK-------ELFSKLFADG-------IRPTIRTYTVMIKGLLKEGLSDEAYDLFR 532

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            M+  G +P+   Y+ +I G+        A +L   +  +    + S++  L++  S+ E
Sbjct: 533 KMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSANLSTFQMLLDLESQDE 592

Query: 364 KVEE 367
            + +
Sbjct: 593 IISQ 596



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 85/211 (40%), Gaps = 40/211 (18%)

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE 389
           IDDA   F  +      P  + +   + S++K ++    +SL  +M              
Sbjct: 69  IDDALASFYRMVRMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQM-------------- 114

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
             +LF   HN      +   N L++ LC+   +  A  +  K+ + G  P   T+  +I 
Sbjct: 115 --DLFGVTHN------VYSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALIN 166

Query: 450 GLCIEGGIEKAYDLLPDMEEKIRE------------------CLKAIELLHKMAKRYVKP 491
           GLC EG I++A +L  +M  +  E                     A+++  KM +   KP
Sbjct: 167 GLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKP 226

Query: 492 DEITVSILEELLNKDENCHECMNLLPSFLSR 522
           D +T + + + L KD   ++ M  L   L R
Sbjct: 227 DVVTYNTIIDSLCKDRLVNDAMEFLSEMLDR 257


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 155/520 (29%), Positives = 247/520 (47%), Gaps = 115/520 (22%)

Query: 59  ENSKSGEVEL--NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           E  +SG V++  +DA+  F  MIH +P P +  F+ L  A+A  K Y   + L +++   
Sbjct: 58  ERLRSGLVDIKADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELK 117

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+  +  +L+I++NCFC+   +  AF A+G+I++  + P+ +T   LI GLC++G+ +EA
Sbjct: 118 GIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEA 177

Query: 177 ----------------------------SG-------LFTKFVAFDCRPNVIP-----NV 196
                                       SG       L  K V + C+PN +      NV
Sbjct: 178 LELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNV 237

Query: 197 IC--------------------------YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           +C                          Y+ IIDGLCK G ++    LF +M+ +GI  +
Sbjct: 238 MCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTN 297

Query: 231 AFVYNSLIRVYCCAVNWEDA----------------------------KGNTSAALELHE 262
              YN LI  +C A  W+D                             +G    A ELH+
Sbjct: 298 IITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHK 357

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
           E ++          PD ++Y S+I+  CK+  +DKA ++   M S+G  P++  ++ LI+
Sbjct: 358 EMIHRG------IAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILIN 411

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
           GYC   RIDD  +LF  +   G + DT +YNTLI  + ++ K+  A  L+ EM+S  V P
Sbjct: 412 GYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPP 471

Query: 383 -------------DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
                        DN    +A E+F  +  +K ELD+ ++N ++ G+C + ++  AW+LF
Sbjct: 472 NIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLF 531

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
             LP  G +P V TY +MI GLC +G + +A  L   MEE
Sbjct: 532 CSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEE 571



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 148/316 (46%), Gaps = 17/316 (5%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L++A   FN M     T  + ++N L+G       + +   L   +    + P+ V+ ++
Sbjct: 279 LDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSV 338

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++ F K   + +A      ++ +  +PD +T   LI G C +    +A+ +    V+  
Sbjct: 339 LIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKG 398

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C PN+      +  +I+G CK   ++    LF  M  RG+  D   YN+LI+ +C     
Sbjct: 399 CDPNIRT----FNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFC----- 449

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               G  + A EL +E V+          P++++Y  +++ LC +   +KA E+F  ++ 
Sbjct: 450 --ELGKLNVAKELFQEMVSRK------VPPNIVTYKILLDGLCDNGESEKALEIFEKIEK 501

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
             +  D+ +Y+ +I G C   ++DDA  LF S+  +G  P   +YN +I    K   + E
Sbjct: 502 SKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSE 561

Query: 368 ALSLYGEMISMGVRPD 383
           A  L+ +M   G  PD
Sbjct: 562 AELLFRKMEEDGHAPD 577



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 91/213 (42%), Gaps = 40/213 (18%)

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL 388
           + DDA  LF  +     +P    ++ L ++ +K ++ +  L+L  +M             
Sbjct: 68  KADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQM------------- 114

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
              EL    HN      L   + +++  C+  +L  A+    K+ + G EPN +T++ +I
Sbjct: 115 ---ELKGIAHN------LYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLI 165

Query: 449 CGLCIEGGIEKAYDLLPDMEEKIRE-------------CL-----KAIELLHKMAKRYVK 490
            GLC+EG + +A +L+  M E   +             CL     +A+ L+ KM +   +
Sbjct: 166 NGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQ 225

Query: 491 PDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
           P+ +T   +  ++ K       M LL     RN
Sbjct: 226 PNAVTYGPVLNVMCKSGQTALAMELLRKMEERN 258


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 140/485 (28%), Positives = 236/485 (48%), Gaps = 80/485 (16%)

Query: 59  ENSKSGEVEL--NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           E  +SG V++  +DA+  F  MI  +P P +  F+    A+A  K +   +   ++L   
Sbjct: 58  ERLRSGIVDIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELN 117

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+  +  +LNI++NCFC+      A+  LG++++  + PD  T   LI+GL ++GK +EA
Sbjct: 118 GIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEA 177

Query: 177 SGLFTKFVAFDCRPNVI-------------------------------PNVICYASIIDG 205
             L  + V   C+P+V+                                +V  Y++IID 
Sbjct: 178 VVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDS 237

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA--------------- 250
           LC+DG ++    LF +M+ +GI      YNSL+R  C A  W D                
Sbjct: 238 LCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPN 297

Query: 251 -------------KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
                        +G    A EL++E +           P++++Y ++++  C    + +
Sbjct: 298 VITFNVLLDVFVKEGKLQEANELYKEMITRG------ISPNIITYNTLMDGYCMQNRLSE 351

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A  +   M      PD+V ++SLI GYC++ R+DD  K+F +I   G + +  +Y+ L+ 
Sbjct: 352 ANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQ 411

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFEL 404
            + +  K++ A  L+ EM+S GV PD             N  + +A E+F  L  +K +L
Sbjct: 412 GFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDL 471

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            + ++  +++G+CK  ++  AW LF  LP  G +PNV+TYTVMI GLC +G + +A  LL
Sbjct: 472 GIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILL 531

Query: 465 PDMEE 469
             MEE
Sbjct: 532 RKMEE 536



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 162/317 (51%), Gaps = 17/317 (5%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A+  F  M        + ++NSL+  L     + +   L + + +  ++P+ ++ N+
Sbjct: 244 IDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNV 303

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++ F K   + +A      ++ +  SP+++T   L+ G CMQ + +EA+ +    V   
Sbjct: 304 LLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 363

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C P+++     + S+I G C    V+    +F ++  RG+  +A  Y+ L++ +C     
Sbjct: 364 CSPDIVT----FTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFC----- 414

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               G    A EL +E V+     GV+  PDV++Y  +++ LC +  ++KA E+F D++ 
Sbjct: 415 --QSGKIKLAEELFQEMVSH----GVL--PDVMTYGILLDGLCDNGKLEKALEIFEDLQK 466

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
             +   +V+Y+++I+G C  G+++DA  LF S+  +G  P+  +Y  +I+   K   + E
Sbjct: 467 SKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSE 526

Query: 368 ALSLYGEMISMGVRPDN 384
           A  L  +M   G  P++
Sbjct: 527 ANILLRKMEEDGNAPND 543



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 22/179 (12%)

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
           D+  D A  LF +M     +P +V +S          + +        +E  G   +  +
Sbjct: 66  DIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYT 125

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNC 411
            N +IN + +  K   A S+ G+++ +G  PD                       T FN 
Sbjct: 126 LNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDT----------------------TTFNT 163

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           L+ GL    ++  A  L  ++   G +P+VVTY  ++ G+C  G    A DLL  MEE+
Sbjct: 164 LIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEER 222


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 141/485 (29%), Positives = 235/485 (48%), Gaps = 80/485 (16%)

Query: 59  ENSKSGEVEL--NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           E  +SG V++  +DA+  F  MI  +P P +  F+    A+A  K +   +   ++L   
Sbjct: 58  ERLRSGIVDIKKDDAIALFQEMIRSRPLPGLVDFSRFFSAIARTKQFNLVLDFCKQLELN 117

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+  +  +LNI++NCFC+      A+  LG++++  + PD  T   LI GLC++GK ++A
Sbjct: 118 GIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKA 177

Query: 177 SGLFTKFVAFDCRP-------------------------------NVIPNVICYASIIDG 205
             L  + V   C+P                               NV  +V  Y++IID 
Sbjct: 178 VVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDS 237

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA--------------- 250
           LC+DG ++    LF +M+ +GI      YNSL+R  C A  W D                
Sbjct: 238 LCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPN 297

Query: 251 -------------KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
                        +G    A EL++E +           P++++Y ++++  C    + +
Sbjct: 298 VITFNVLLDVFVKEGKLQEANELYKEMITRG------ISPNIITYNTLMDGYCMQNRLSE 351

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A  +   M      PD+V ++SLI GYC++ R+DD  K+F +I   G + +  +Y+ L+ 
Sbjct: 352 ANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQ 411

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFEL 404
            + +  K++ A  L+ EM+S GV PD             N  + +A E+F  L  +K +L
Sbjct: 412 GFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDL 471

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            + ++  +++G+CK  ++  AW LF  LP  G +PNV+TYTVMI GLC +G + +A  LL
Sbjct: 472 GIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILL 531

Query: 465 PDMEE 469
             MEE
Sbjct: 532 RKMEE 536



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 163/361 (45%), Gaps = 26/361 (7%)

Query: 27  PISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPF 86
            ISL  E E   + S+ V+       L++ L +  K      ND       M+  +  P 
Sbjct: 247 AISLFKEMETKGIKSSVVTY----NSLVRGLCKAGK-----WNDGALLLKDMVSREIVPN 297

Query: 87  MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALG 146
           + +FN LL     +        L + + T G+ P+ ++ N LM+ +C    +S+A   L 
Sbjct: 298 VITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLD 357

Query: 147 RILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGL 206
            ++R   SPD+VT   LI+G CM  +  +   +F        +  ++ N + Y+ ++ G 
Sbjct: 358 LMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNI----SKRGLVANAVTYSILVQGF 413

Query: 207 CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266
           C+ G +     LF +M   G+ PD   Y  L+   C         G    ALE+ E+   
Sbjct: 414 CQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLC-------DNGKLEKALEIFEDLQK 466

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
              +LG++       Y +II  +CK   V+ A  LF  +  +G+ P+V+ Y+ +I G C 
Sbjct: 467 SKMDLGIV------MYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCK 520

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC 386
            G + +A  L   +E +G  P+  +YNTLI ++ +   +  +  L  EM S G   D S 
Sbjct: 521 KGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASS 580

Query: 387 I 387
           I
Sbjct: 581 I 581



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 22/179 (12%)

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
           D+  D A  LF +M     +P +V +S          + +        +E  G   +  +
Sbjct: 66  DIKKDDAIALFQEMIRSRPLPGLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYT 125

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNC 411
            N +IN + +  K   A S+ G+++ +G  PD                       T FN 
Sbjct: 126 LNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDT----------------------TTFNT 163

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           L++GLC   ++  A  L  ++   G +P++VTY  ++ G+C  G    A+D+L  MEE+
Sbjct: 164 LINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEER 222


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 164/576 (28%), Positives = 270/576 (46%), Gaps = 133/576 (23%)

Query: 59  ENSKSGEVEL--NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           E  +SG V++  +DA+  F  MIH +P P +  F+ L  A+A  K Y   + L +++   
Sbjct: 156 ERLRSGLVDIKADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELK 215

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+  +  +L+I++NCFC+   +  AF A+G+I++  + P+ +T   LI GLC++G+ +EA
Sbjct: 216 GIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEA 275

Query: 177 ----------------------------SG-------LFTKFVAFDCRPNVIP-----NV 196
                                       SG       L  K V + C+PN +      NV
Sbjct: 276 LELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNV 335

Query: 197 IC--------------------------YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           +C                          Y+ IIDGLCK G ++    LF +M+ +GI  +
Sbjct: 336 MCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTN 395

Query: 231 AFVYNSLIRVYCCAVNWEDA----------------------------KGNTSAALELHE 262
              YN LI  +C A  W+D                             +G    A ELH+
Sbjct: 396 IITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHK 455

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
           E ++          PD ++Y S+I+  CK+  +DKA ++   M S+G  P++  ++ LI+
Sbjct: 456 EMIHRG------IAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILIN 509

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
           GYC   RIDD  +LF  +   G + DT +YNTLI  + ++ K+  A  L+ EM+S  V P
Sbjct: 510 GYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPP 569

Query: 383 -------------DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
                        DN    +A E+F  +  +K ELD+ ++N ++ G+C + ++  AW+LF
Sbjct: 570 NIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLF 629

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK------------IRECL-- 475
             LP  G +P V TY +MI GLC +G + +A  L   MEE             IR  L  
Sbjct: 630 CSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGD 689

Query: 476 ----KAIELLHKMAKRYVKPDEITVSILEELLNKDE 507
               K+++L+ ++ +     D  T+ ++ ++L+ D+
Sbjct: 690 GDATKSVKLIEELKRCGFSVDASTIKMVIDMLSDDK 725



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 106/250 (42%), Gaps = 30/250 (12%)

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           LSY   + S   D+  D A +LF DM     +P V+ +S L        + D    L   
Sbjct: 152 LSYRERLRSGLVDIKADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQ 211

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN-------------SC 386
           +E +G   +  + + +IN + +  K+  A S  G++I +G  P+                
Sbjct: 212 MELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGR 271

Query: 387 ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTV 446
           + EA EL   +     + DL   N LV+GLC S +   A  L  K+  YG +PN VTY  
Sbjct: 272 VSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGP 331

Query: 447 MICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
           ++  +C  G                 +   A+ELL KM +R +K D +  SI+ + L K 
Sbjct: 332 VLNVMCKSG-----------------QTALAMELLRKMEERNIKLDAVKYSIIIDGLCKH 374

Query: 507 ENCHECMNLL 516
            +     NL 
Sbjct: 375 GSLDNAFNLF 384



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 91/213 (42%), Gaps = 40/213 (18%)

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL 388
           + DDA  LF  +     +P    ++ L ++ +K ++ +  L+L  +M             
Sbjct: 166 KADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQM------------- 212

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
              EL    HN      L   + +++  C+  +L  A+    K+ + G EPN +T++ +I
Sbjct: 213 ---ELKGIAHN------LYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLI 263

Query: 449 CGLCIEGGIEKAYDLLPDMEEKIRE-------------CL-----KAIELLHKMAKRYVK 490
            GLC+EG + +A +L+  M E   +             CL     +A+ L+ KM +   +
Sbjct: 264 NGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQ 323

Query: 491 PDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
           P+ +T   +  ++ K       M LL     RN
Sbjct: 324 PNAVTYGPVLNVMCKSGQTALAMELLRKMEERN 356


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 143/490 (29%), Positives = 233/490 (47%), Gaps = 80/490 (16%)

Query: 58  SENSKSGEVEL--NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNT 115
            E  +SG V++  +DA+  F  MI  +P P +  F+     +A  K +   +   +++  
Sbjct: 34  GERLRSGIVDIKEDDAIDLFQEMIRSRPLPSLVDFSRFFSGVASTKQFNLVLDFCKKMEL 93

Query: 116 IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
            G+  +  +LNI++NCFC+      A+  LG++++  + PD  T   LI GLC++ K +E
Sbjct: 94  NGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSE 153

Query: 176 ASGLFTKFVAFDCRPNVI-------------------------------PNVICYASIID 204
           A  L  + V   C+PNV+                                +V  Y++IID
Sbjct: 154 AVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIID 213

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA-------------- 250
            LC+DG ++    LF +M+ +GI      YNSL+   C A  W D               
Sbjct: 214 SLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIP 273

Query: 251 --------------KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
                         +G    A EL++E +           P+ ++Y S+++  C    + 
Sbjct: 274 NVITFNVLIDVFVKEGKLQEANELYKEMITKG------ISPNTITYNSLMDGYCMQNRLS 327

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A  +   M      PD+V ++SLI GYC + R+D+  KLF  I   G + +T +Y+ L+
Sbjct: 328 EANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILV 387

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFE 403
             + +  K+E A  L+ EM+S+GV PD             N  + +A E+F  L  +K  
Sbjct: 388 QGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMN 447

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
           LD+ ++  +++G+CK  ++  AW LF  LP  G +PNV+TYTVMI GLC +G + +A  L
Sbjct: 448 LDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANIL 507

Query: 464 LPDMEEKIRE 473
           L  MEE   E
Sbjct: 508 LRKMEEDGNE 517



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 100/384 (26%), Positives = 185/384 (48%), Gaps = 39/384 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A+  F  M        + ++NSL+G L     + + + L + + +  ++P+ ++ N+
Sbjct: 221 IDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNV 280

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++ F K   + +A      ++ K  SP+ +T   L+ G CMQ + +EA+ +    V   
Sbjct: 281 LIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMV--- 337

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            R N  P+++ + S+I G CK   V++   LF  +  RG+  +   Y+ L++ +C     
Sbjct: 338 -RNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFC----- 391

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
                  S  LE+ EE       LGV+  PDV++Y  +++ LC +  ++KA E+F D++ 
Sbjct: 392 ------QSGKLEIAEELFQEMVSLGVL--PDVMTYGILLDGLCDNGKLEKALEIFEDLQK 443

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
             +  D+V+Y+ +I+G C  G+++DA  LF S+  +G  P+  +Y  +I+   K   + E
Sbjct: 444 SKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSE 503

Query: 368 ALSLYGEMISMGVRPDNSC--------------ILEAAELFRTLHNTKFELDLTVFNCLV 413
           A  L  +M   G  P N C              +  +A+L   + +  F  D +    ++
Sbjct: 504 ANILLRKMEEDGNEP-NDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVI 562

Query: 414 DGLCKSWRLRSAWELFKKLPRYGP 437
           D       L SA   FK+ PR  P
Sbjct: 563 D------MLSSAVWWFKE-PRRSP 579



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 102/249 (40%), Gaps = 40/249 (16%)

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
           D+  D A +LF +M     +P +V +S    G     + +        +E  G   +  +
Sbjct: 43  DIKEDDAIDLFQEMIRSRPLPSLVDFSRFFSGVASTKQFNLVLDFCKKMELNGIAHNIYT 102

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNC 411
            N +IN + +  K   A S+ G+++ +G  PD                       T FN 
Sbjct: 103 LNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDT----------------------TTFNT 140

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK- 470
           L++GLC   ++  A  L  ++   G +PNVVTY  ++ G+C  G    A DLL  M+E+ 
Sbjct: 141 LINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERN 200

Query: 471 ----------IRECL-------KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECM 513
                     I + L        AI L  +M  + +K   +T + L   L K    ++ +
Sbjct: 201 VKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGV 260

Query: 514 NLLPSFLSR 522
            LL    SR
Sbjct: 261 QLLKDMTSR 269



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 6/186 (3%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           +SG++E+ + L  F  M+ +   P + ++  LL  L         + + E L    +  D
Sbjct: 392 QSGKLEIAEEL--FQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLD 449

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V   I++   CK   V DA+     +  K   P+V+T   +I GLC +G  +EA+ L  
Sbjct: 450 IVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLR 509

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           K           PN   Y ++I    +DG +     L  +MK  G   DA     +I + 
Sbjct: 510 KME----EDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDML 565

Query: 242 CCAVNW 247
             AV W
Sbjct: 566 SSAVWW 571


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  235 bits (600), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 143/485 (29%), Positives = 237/485 (48%), Gaps = 80/485 (16%)

Query: 59  ENSKSGEVEL--NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           E  +SG V++  +DA+  F  MI  +P P +  F+    A+A  K +   +   ++L   
Sbjct: 58  ERLRSGIVDIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELN 117

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+  +  +LNI++NCFC+      A+  LG++++  + PD  T   LI+GL ++GK +EA
Sbjct: 118 GIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEA 177

Query: 177 SGLFTKFVAFDCRPNV-----IPNVIC--------------------------YASIIDG 205
             L  + V   C+P+V     I N IC                          Y++IID 
Sbjct: 178 VVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDS 237

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA--------------- 250
           LC+DG ++    LF +M+ +GI      YNSL+R  C A  W D                
Sbjct: 238 LCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPN 297

Query: 251 -------------KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
                        +G    A EL++E +           P++++Y ++++  C    + +
Sbjct: 298 VITFNVLLDVFVKEGKLQEANELYKEMITRG------ISPNIITYNTLMDGYCMQNRLSE 351

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A  +   M      PD+V ++SLI GYC++ R+DD  K+F +I   G + +  +Y+ L+ 
Sbjct: 352 ANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQ 411

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFEL 404
            + +  K++ A  L+ EM+S GV PD             N  + +A E+F  L  +K +L
Sbjct: 412 GFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDL 471

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            + ++  +++G+CK  ++  AW LF  LP  G +PNV+TYTVMI GLC +G + +A  LL
Sbjct: 472 GIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILL 531

Query: 465 PDMEE 469
             MEE
Sbjct: 532 RKMEE 536



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 163/361 (45%), Gaps = 26/361 (7%)

Query: 27  PISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPF 86
            ISL  E E   + S+ V+       L++ L +  K      ND       M+  +  P 
Sbjct: 247 AISLFKEMETKGIKSSVVTY----NSLVRGLCKAGK-----WNDGALLLKDMVSREIVPN 297

Query: 87  MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALG 146
           + +FN LL     +        L + + T G+ P+ ++ N LM+ +C    +S+A   L 
Sbjct: 298 VITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLD 357

Query: 147 RILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGL 206
            ++R   SPD+VT   LI+G CM  +  +   +F        +  ++ N + Y+ ++ G 
Sbjct: 358 LMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNI----SKRGLVANAVTYSILVQGF 413

Query: 207 CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266
           C+ G +     LF +M   G+ PD   Y  L+   C         G    ALE+ E+   
Sbjct: 414 CQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLC-------DNGKLEKALEIFEDLQK 466

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
              +LG++       Y +II  +CK   V+ A  LF  +  +G+ P+V+ Y+ +I G C 
Sbjct: 467 SKMDLGIV------MYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCK 520

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC 386
            G + +A  L   +E +G  P+  +YNTLI ++ +   +  +  L  EM S G   D S 
Sbjct: 521 KGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASS 580

Query: 387 I 387
           I
Sbjct: 581 I 581



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 22/179 (12%)

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
           D+  D A  LF +M     +P +V +S          + +        +E  G   +  +
Sbjct: 66  DIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYT 125

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNC 411
            N +IN + +  K   A S+ G+++ +G  PD                       T FN 
Sbjct: 126 LNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDT----------------------TTFNT 163

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           L+ GL    ++  A  L  ++   G +P+VVTY  ++ G+C  G    A DLL  MEE+
Sbjct: 164 LIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEER 222


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  234 bits (598), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 147/469 (31%), Positives = 239/469 (50%), Gaps = 72/469 (15%)

Query: 39  LHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALA 98
           LH++++S     +   KY    S +    + DAL  FN+MIH  P P +  F+ LL AL 
Sbjct: 39  LHTSTISRSRSGSGRQKYQKGCSLT---NIEDALFSFNHMIHKHPLPCIVEFDKLLSALV 95

Query: 99  GKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVV 158
             K+Y   + LS+R+  + +  D    NIL+NCF ++  V  AF  LG+I++  F PD V
Sbjct: 96  RIKHYGTVLSLSKRIELLRIERDVFHFNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAV 155

Query: 159 TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI------------------------- 193
           T   LI GLC + KF  A   F + VA   +PN+                          
Sbjct: 156 TFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKM 215

Query: 194 ------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
                 P+++ Y +IIDGLCKD  V++   +F ++KG+G+ PD F Y+ L+   C +   
Sbjct: 216 DKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQK 275

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           E+A         L  E ++ N        PDV+++  +++ LCK+ ++ +A+ +   M  
Sbjct: 276 EEASA-------LFNEMMSLN------IMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIE 322

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           +G+ P+   Y+SL++GYCL  ++ +AR +F ++ ++GC+P+  SYN LIN Y K ++++E
Sbjct: 323 KGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDE 382

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           A  L+ EM   G+ P+                  F      +N L+ GLC++ R   A E
Sbjct: 383 ARELFDEMSFRGLIPNT-----------------FN-----YNTLISGLCQAGRHCEARE 420

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLK 476
           LFK +   G  P++VT T+++  LC  G ++ A  L   M++    CLK
Sbjct: 421 LFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQD---SCLK 466



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 160/325 (49%), Gaps = 30/325 (9%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E +   A+ FF+ M+     P + ++N+++            + L ++++  G  PD V 
Sbjct: 167 EDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVI 226

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N +++  CK   VS+A      I  K   PDV T   L+ GLC   +  EAS LF + +
Sbjct: 227 YNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMM 286

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
           +     N++P+V+ +  ++D LCK+G +++ + +   M  +G+ P+   YNSL+  YC  
Sbjct: 287 SL----NIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQ 342

Query: 245 VNWEDAKGNTSAALEL--------HEEFVNG---------NGEL-------GVICHPDVL 280
               +A+    A +          +   +NG           EL       G+I  P+  
Sbjct: 343 NKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLI--PNTF 400

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
           +Y ++I+ LC+     +A+ELF DM+++G  PD+V  + L+D  C +G +D+A +LF ++
Sbjct: 401 NYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAM 460

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKV 365
           +     P+  +Y+ LI +  K  K+
Sbjct: 461 QDSCLKPNLVTYDILIRAMYKSGKI 485



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 100/235 (42%), Gaps = 30/235 (12%)

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F  M  +  +P +V +  L+     +        L   IE      D   +N LIN +S+
Sbjct: 72  FNHMIHKHPLPCIVEFDKLLSALVRIKHYGTVLSLSKRIELLRIERDVFHFNILINCFSR 131

Query: 362 IEKVEEALSLYGEMISMGVRPD--------NSCILE-----AAELFRTLHNTKFELDLTV 408
           +++V+ A S+ G++I +G  PD        N    E     A E F  +  + ++ +L  
Sbjct: 132 LQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHT 191

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +N ++ G CK  +   A  L KK+ + G  P++V Y  +I GLC +  + +A D+  +++
Sbjct: 192 YNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIK 251

Query: 469 EKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
            K                  V+PD  T SIL   L   +   E   L    +S N
Sbjct: 252 GK-----------------GVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLN 289


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  234 bits (598), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 159/533 (29%), Positives = 257/533 (48%), Gaps = 77/533 (14%)

Query: 40  HSNSVSTVEEKTKLLKYLSENSK-SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALA 98
           H N +     K   + Y S ++      +++DA+  FN ++    TP    FN +LG+L 
Sbjct: 37  HFNFIPYSSSKINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLV 96

Query: 99  GKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVV 158
             K+Y   + LS+++   G+ P+ V+ NIL+NCFC++  +  AF    +IL+  + PD +
Sbjct: 97  KSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTI 156

Query: 159 TLGCLIRGLCMQGKFTEASGLFTKFVA----FD-----------CRPN------------ 191
           T   LI+GLC++G+  +A     K VA    FD           C+              
Sbjct: 157 TFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRV 216

Query: 192 ----VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               V PNV+ Y +IID +CK   VN+   LF +M  +GI PD   Y++LI  +C     
Sbjct: 217 DGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCIL--- 273

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               G  + A++L  + +  N        PDV ++  ++N+ CKD  + + K +F  M  
Sbjct: 274 ----GKLNDAIDLFNKMILEN------IKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMK 323

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           +GI P+ V Y+SL+DGYCL+  ++ A+ +F ++   G  PD  SY+ +IN + KI+K +E
Sbjct: 324 QGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDE 383

Query: 368 ALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           A++L+ EM    + PD             +  I  A +L   +H+      +  +N ++D
Sbjct: 384 AMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILD 443

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE- 473
            LCK  ++  A  L  KL   G +PN+ TY+++I GLC  G +E A  +   +  K    
Sbjct: 444 ALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNL 503

Query: 474 ------------CL-----KAIELLHKMAKRYVKPDEITVS-ILEELLNKDEN 508
                       C+     +A+ LL KM      PD  T   I+  L  KDEN
Sbjct: 504 NVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDEN 556



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 158/321 (49%), Gaps = 17/321 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +LNDA+  FN MI     P + +FN L+ A            + + +   G+ P+FV+ N
Sbjct: 275 KLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYN 334

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            LM+ +C +  V+ A      + +   +PD+ +   +I G C   KF EA  LF +    
Sbjct: 335 SLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEM--- 391

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             R N+IP+V+ Y+S+IDGL K G ++    L   M  RG+ P    YNS++   C    
Sbjct: 392 -HRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQ 450

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            + A    +   +L ++ +           P++ +Y  +I  LC+   ++ A+++F  + 
Sbjct: 451 VDKA---IALLTKLKDKGI----------QPNMYTYSILIKGLCQSGKLEDARKVFEGLL 497

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            +G   +V  Y+ +I G+C+ G  ++A  L   +E  GCIPD  +Y  +I S  K ++ +
Sbjct: 498 VKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDEND 557

Query: 367 EALSLYGEMISMGVRPDNSCI 387
            A  L  EMI+ GVRP    I
Sbjct: 558 MAEKLLREMIARGVRPRQIAI 578



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/420 (23%), Positives = 182/420 (43%), Gaps = 57/420 (13%)

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           +F+S +     F     V DA     R+LR+  +P       ++  L     +     L 
Sbjct: 49  NFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLS 108

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            K      +PN++   I    +I+  C+ G +     +F  +   G  PD   + +LI+ 
Sbjct: 109 QKMEFRGIKPNLVNCNI----LINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKG 164

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
            C        KG    A   H++ V     LG   H D +SY ++I+ LCK      A +
Sbjct: 165 LCL-------KGQIQQAFLFHDKVV----ALGF--HFDQISYGTLIHGLCKVGETRAALD 211

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           L   +    + P+VV+Y+++ID  C +  +++A  LF  + S+G  PD  +Y+ LI+ + 
Sbjct: 212 LLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFC 271

Query: 361 KIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
            + K+ +A+ L+ +MI   ++PD                      +  FN LV+  CK  
Sbjct: 272 ILGKLNDAIDLFNKMILENIKPD----------------------VYTFNILVNAFCKDG 309

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL---------PDMEE-- 469
           +++    +F  + + G +PN VTY  ++ G C+   + KA  +          PD++   
Sbjct: 310 KMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYS 369

Query: 470 -------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
                  KI++  +A+ L  +M ++ + PD +T S L + L+K       + L+     R
Sbjct: 370 IMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDR 429


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score =  234 bits (597), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 158/585 (27%), Positives = 266/585 (45%), Gaps = 133/585 (22%)

Query: 59  ENSKSGEVEL--NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           E  +SG V++  +DA+  F  M+  +P P +  FN L G LA  K Y   + L +++   
Sbjct: 60  ERLRSGLVDIKKDDAVALFQSMLRSRPLPTVIDFNRLFGLLARTKQYDLVLALCKQMELK 119

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILR---------------------KVFS- 154
           G+  D  +LNI++NCFC+   +  AF A+G+I +                     +VF  
Sbjct: 120 GIAYDLYTLNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEA 179

Query: 155 -------------PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN---------- 191
                        PD++TL  ++ GLC++ + +EA  L  + +A  C+PN          
Sbjct: 180 VELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNR 239

Query: 192 ---------------------VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
                                + P+V+ Y  IID LCKDG ++     F +M+ +GI  +
Sbjct: 240 MCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKAN 299

Query: 231 AFVYNSLIRVYCCAVNWEDA----------------------------KGNTSAALELHE 262
            F YNSLI  +C    W+D                             +G  + A +L+ 
Sbjct: 300 VFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYN 359

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
           E +    E      P+ ++Y S+I  LC D  +D+A ++   M S+G  PD+  Y+ LI+
Sbjct: 360 EMITRGIE------PNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILIN 413

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
           G+C   ++DD  +LF  +   G I DT +Y+TLI  + +  K+  A  ++ EM+S GV P
Sbjct: 414 GFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHP 473

Query: 383 -------------DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
                        DN  + EA  +   +H  K ELD+ ++N ++ G+C + ++  AW LF
Sbjct: 474 GIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLF 533

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK------------IRECLK- 476
             LP  G + ++ +Y +M+ GLC    + +A  L   M+E             IR  L+ 
Sbjct: 534 CSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRAHLRG 593

Query: 477 -----AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                +++L+ +M +     D  TV I+ ++L+  E     +N+L
Sbjct: 594 NDITTSVQLIEEMKRCGFSSDASTVKIVMDMLSSGELDKSFLNML 638



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 82/200 (41%), Gaps = 39/200 (19%)

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEA 390
           DDA  LF S+     +P    +N L    ++ ++ +  L+L  +M   G+          
Sbjct: 72  DDAVALFQSMLRSRPLPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGI---------- 121

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
                         DL   N +++  C+  +L  A+    K+ + G EPN VT+  ++ G
Sbjct: 122 ------------AYDLYTLNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNG 169

Query: 451 LCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCH 510
           LC+EG +                  +A+EL+  M      PD IT++ +   L   +   
Sbjct: 170 LCLEGRV-----------------FEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVS 212

Query: 511 ECMNLLPSFLSRNQEESKLT 530
           E ++L+   ++   + ++ T
Sbjct: 213 EAVDLIARMMANGCQPNQFT 232


>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
 gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
          Length = 556

 Score =  234 bits (597), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 158/516 (30%), Positives = 253/516 (49%), Gaps = 89/516 (17%)

Query: 52  KLLKYLS----ENSK--SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVN 105
           K L++ S    +N+K  S    ++DA+  FN++I+MQP P +  FN+++G++   K+   
Sbjct: 43  KFLRFFSHCPKQNAKILSSFNGIDDAVTLFNHLINMQPLPSVIQFNTIIGSVVKMKHCPV 102

Query: 106 FICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165
            I L +++   G+ P   +L+I +NC+C +  +  AF  LG +L++ + P+ +TL  +++
Sbjct: 103 AISLLKQMVFKGVTPSIFTLSIWINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMK 162

Query: 166 GLCMQGKFTE---------ASGLFTKFVAFDCRPN----------------------VIP 194
           GLC+ G+  +         A G+    V +    N                      V P
Sbjct: 163 GLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKP 222

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           N++ Y  IID  CKD    K R L+L +   GI PD   Y SLIR +C    W + K   
Sbjct: 223 NIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVK--- 279

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
               +L  E VN N       +P+V ++  +I++ C+   + +A+ +F  M  RG  PD+
Sbjct: 280 ----QLMCEMVNKN------INPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDI 329

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           V +++LI G+CL G + +ARKLF ++   G +PD  SY  LI  Y K ++++EA+SL+ E
Sbjct: 330 VTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNE 389

Query: 375 MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
           M     R  N                   LD+ +++ L+DGLCKS R+  AWELF  +  
Sbjct: 390 M-----RCKN-----------------MVLDIVLYSSLIDGLCKSGRISYAWELFSTINN 427

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEI 494
            GP PNV+TY ++I   C                 KI++    IEL   M  + + P  +
Sbjct: 428 DGPPPNVITYNILIDAFC-----------------KIQDIDMGIELFKLMCGKGLTPTVL 470

Query: 495 TVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           T +IL     K +   E MNLL    S+N     +T
Sbjct: 471 TYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSIT 506



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 114/346 (32%), Positives = 175/346 (50%), Gaps = 30/346 (8%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ V  N++++ FCK      A     +I+     PD++T   LIRG C  G++ E   L
Sbjct: 222 PNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQL 281

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             + V      N+ PNV  +  +ID  C+ G + + + +F  M  RG  PD   +N+LI 
Sbjct: 282 MCEMV----NKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLIS 337

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            +C         GN   A +L +       E G++  PDV SY  +I   CK   +D+A 
Sbjct: 338 GHC-------LHGNVLEARKLFDTVF----ERGIL--PDVWSYTILIIGYCKCKRIDEAV 384

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            LF +M+ + ++ D+V+YSSLIDG C  GRI  A +LF +I ++G  P+  +YN LI+++
Sbjct: 385 SLFNEMRCKNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAF 444

Query: 360 SKIEKVEEALSLYGEMISMGVRP---------DNSC----ILEAAELFRTLHNTKFELDL 406
            KI+ ++  + L+  M   G+ P         +  C    I EA  L   + +     D 
Sbjct: 445 CKIQDIDMGIELFKLMCGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDS 504

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
             +N L DGLCKS R+  AWELFK +   GP  +V TY V++   C
Sbjct: 505 ITYNSLFDGLCKSGRISDAWELFKVMHVGGPPVDVATYNVLLDAFC 550



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 148/315 (46%), Gaps = 22/315 (6%)

Query: 51  TKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLS 110
           T L++      + GEV+    +C    M++    P + +FN L+ A   K   +    + 
Sbjct: 263 TSLIRGFCRTGQWGEVK--QLMC---EMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMF 317

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
             +   G  PD V+ N L++  C    V +A      +  +   PDV +   LI G C  
Sbjct: 318 NLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKC 377

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
            +  EA  LF +     C+ N++ +++ Y+S+IDGLCK G ++    LF  +   G  P+
Sbjct: 378 KRIDEAVSLFNEM---RCK-NMVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPN 433

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
              YN LI  +C          +    +EL +  + G G       P VL+Y  +IN  C
Sbjct: 434 VITYNILIDAFC-------KIQDIDMGIELFK-LMCGKG-----LTPTVLTYNILINGYC 480

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K   + +A  L   M+S+ + PD + Y+SL DG C  GRI DA +LF  +   G   D +
Sbjct: 481 KSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLCKSGRISDAWELFKVMHVGGPPVDVA 540

Query: 351 SYNTLINSYSKIEKV 365
           +YN L++++ K + V
Sbjct: 541 TYNVLLDAFCKAQDV 555


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 160/566 (28%), Positives = 265/566 (46%), Gaps = 120/566 (21%)

Query: 55  KYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLN 114
           KYL  N+      L+DAL  FN M+HM P P +  F  +L ++   K Y   + LS +++
Sbjct: 48  KYLHFNT------LDDALSSFNRMLHMHPPPSIVDFAKILTSITKVKRYSTVLSLSRKMD 101

Query: 115 TIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFT 174
           + G+  +  +LN+L+N FC +  V+ AF  L +IL+    PD  +   LI+GLC++G+  
Sbjct: 102 SFGIPHNVYTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIG 161

Query: 175 EASGLFTKFVAFDCRPNVI-------------------------------PNVICYASII 203
           EA  LF K +    +P+V+                               P+V+ Y ++I
Sbjct: 162 EALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLI 221

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
             LCKD    +   LF +M  +GI P+    NSL+   C    W+    NT     L  E
Sbjct: 222 HSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHV--NT-----LLNE 274

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
            V+          P+ +S  +++++LCK+ +V +A ++   M   G+ PDVV Y++LIDG
Sbjct: 275 MVDSK------IMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDG 328

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE-------------------- 363
           +CL   +D+A K+F  +  +GC P+  SYNTLIN Y KIE                    
Sbjct: 329 HCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPN 388

Query: 364 ---------------KVEEALSLYGEMISMGVRPD------------NSCILEAA-ELFR 395
                          ++++A++L+ EM++ G  PD             +C L+ A  L +
Sbjct: 389 TVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLK 448

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            +  +  + D+ ++  ++DG+C++  L  A +LF  L   G +PNV TY +M  GLC  G
Sbjct: 449 AIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRG 508

Query: 456 GIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVS 497
            +++A  L  +M+E                  +  E  +AI+LL +M  R    D  T +
Sbjct: 509 LLDEATKLFMEMDENACSADGCTYNTITQGFLRNNETSRAIQLLEEMLARGFSCDVSTTT 568

Query: 498 ILEELLNKD----ENCHECMNLLPSF 519
           +L  +L+ D       H+  ++ P  
Sbjct: 569 LLVGMLSDDGLDQSEAHKLEDMFPHL 594


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 157/504 (31%), Positives = 250/504 (49%), Gaps = 76/504 (15%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++DA+  FN M+ M+ TP +  FN +L + A  K+Y   + LS RL   G+ PD ++LNI
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+NCFC M  ++  F  L +IL++ + PD VTL  LI+GLC++G+  +A     K +A  
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 159

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
            + N +                               PNV+ Y++IID LCK   V++  
Sbjct: 160 FQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAY 219

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            LF +M  +GI  D   Y++LI  +C        +G    A+ L  E V     L  I +
Sbjct: 220 GLFSEMTVKGISADVVTYSTLIYGFCI-------EGKLKEAIGLLNEMV-----LKTI-N 266

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+V +Y  ++++LCK+  V +AK +   M    + PDV+ YS+L+DGY L+  +  A+ +
Sbjct: 267 PNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHV 326

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC- 386
           F ++   G  PD  +Y  LIN + K + V+EAL+L+ EM    + P         D  C 
Sbjct: 327 FNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCK 386

Query: 387 ---ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
              I    +L   +H+     ++  ++ L+DGLCK+  L  A  LF K+   G  PN  T
Sbjct: 387 SGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFT 446

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEK----------------IRECL--KAIELLHKMA 485
           +T+++ GLC  G ++ A ++  D+  K                 ++ L  +A+ +L KM 
Sbjct: 447 FTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSKME 506

Query: 486 KRYVKPDEITVS-ILEELLNKDEN 508
                PD +T   I+  L  KDEN
Sbjct: 507 DNGCIPDAVTFEIIIIALFKKDEN 530



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 142/285 (49%), Gaps = 25/285 (8%)

Query: 101  KYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTL 160
            K+Y   + LS RL   G+ PD  +LNIL+NCFC M  ++  F  L +IL++ + PD +T 
Sbjct: 940  KHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITF 999

Query: 161  GCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFL 220
              LI GLC++G+  +A     K +A   +     N + Y ++I+G+CK G       L  
Sbjct: 1000 TTLINGLCLKGQVNKALHFHDKLLAQGFQ----LNQVSYGTLINGVCKIGDTRAAIKLLR 1055

Query: 221  DMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVL 280
             + GR   PD  +YN++I   C       A G      E++ + ++           DV+
Sbjct: 1056 KIDGRLTKPDVVMYNTIIDALCKHQLVSKAYG---LFFEMNVKGISA----------DVV 1102

Query: 281  SYCSIINSLCKDVLVDKAKE---LFLDMKSRGIIPDVVVYSSLIDGYCLMGR--IDDARK 335
            +Y ++I   C   +V K KE   L   M  + I P+V  Y+ L+D  C  G+  +D++  
Sbjct: 1103 TYNTLIYGFC---IVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLS 1159

Query: 336  LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
            +   +E  GC  +  ++  +I++  + ++ ++   L  EMI+ G+
Sbjct: 1160 MLSKMEDNGCKANAVTFEIIISALFEKDENDKVEKLLHEMIARGL 1204



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 138/292 (47%), Gaps = 17/292 (5%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E +L +A+   N M+     P + ++N L+ AL  +        +   +    + PD ++
Sbjct: 247 EGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVIT 306

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            + LM+ +  +  V  A      +     +PDV T   LI G C      EA  LF +  
Sbjct: 307 YSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEM- 365

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
               + N++P ++ Y+S+IDGLCK G +  V  L  +M  RG   +   Y+SLI   C  
Sbjct: 366 ---HQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLC-- 420

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                  G+   A+ L     N   + G+   P+  ++  +++ LCK   +  A+E+F D
Sbjct: 421 -----KNGHLDRAIAL----FNKMKDQGI--RPNTFTFTILLDGLCKGGRLKDAQEVFQD 469

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           + ++G   +V  Y+ +IDG+C  G +++A  +   +E  GCIPD  ++  +I
Sbjct: 470 LLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSKMEDNGCIPDAVTFEIII 521



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 94/404 (23%), Positives = 158/404 (39%), Gaps = 91/404 (22%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P  +  N +++ F KM   S A     R+  K   PD++TL  LI   C  G+ T    +
Sbjct: 57  PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSV 116

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             K +                                        RG  PD    N+LI+
Sbjct: 117 LAKILK---------------------------------------RGYPPDTVTLNTLIK 137

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C        KG    AL  H++ +    +L      + +SY ++IN +CK      A 
Sbjct: 138 GLCL-------KGQVKKALHFHDKLLAQGFQL------NQVSYGTLINGVCKIGDTRAAI 184

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           +L   +  R   P+VV+YS++ID  C    + +A  LF  +  +G   D  +Y+TLI  +
Sbjct: 185 KLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGF 244

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
               K++EA+ L  EM+   + P+                      +  +N LVD LCK 
Sbjct: 245 CIEGKLKEAIGLLNEMVLKTINPN----------------------VYTYNILVDALCKE 282

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIE 479
            +++ A  +   + +   +P+V+TY+ ++ G  +                 + E  KA  
Sbjct: 283 GKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFL-----------------VYEVKKAQH 325

Query: 480 LLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
           + + M+   V PD  T +IL     K++   E +NL      +N
Sbjct: 326 VFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKN 369



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 120/285 (42%), Gaps = 51/285 (17%)

Query: 225  RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCS 284
            +GI PD F  N LI  +C         G  +    +  + +          HPD +++ +
Sbjct: 955  KGIQPDLFTLNILINCFC-------HMGQITFNFSILAKILKRG------YHPDTITFTT 1001

Query: 285  IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
            +IN LC    V+KA      + ++G   + V Y +LI+G C +G    A KL   I+   
Sbjct: 1002 LINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRL 1061

Query: 345  CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL 404
              PD   YNT+I++  K + V +A  L+ EM   G+                        
Sbjct: 1062 TKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISA---------------------- 1099

Query: 405  DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            D+  +N L+ G C   +L+ A  L  K+      PNV TY +++  LC EG      DLL
Sbjct: 1100 DVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEG-----KDLL 1154

Query: 465  PDMEEKIRECLKAIELLHKMAKRYVKPDEITVS-ILEELLNKDEN 508
             +          ++ +L KM     K + +T   I+  L  KDEN
Sbjct: 1155 DE----------SLSMLSKMEDNGCKANAVTFEIIISALFEKDEN 1189



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 95/226 (42%), Gaps = 36/226 (15%)

Query: 327  MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN-- 384
            M     A  L   +E +G  PD  + N LIN +  + ++    S+  +++  G  PD   
Sbjct: 939  MKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTIT 998

Query: 385  -----------SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
                         + +A      L    F+L+   +  L++G+CK    R+A +L +K+ 
Sbjct: 999  FTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKID 1058

Query: 434  RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK------------------IRECL 475
                +P+VV Y  +I  LC    + KAY L  +M  K                  + +  
Sbjct: 1059 GRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLK 1118

Query: 476  KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
            +AI LL+KM  + + P+  T +IL + L     C E  +LL   LS
Sbjct: 1119 EAIGLLNKMVLKTINPNVRTYNILVDAL-----CKEGKDLLDESLS 1159



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 100/227 (44%), Gaps = 15/227 (6%)

Query: 85   PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
            P   +F +L+  L  K      +   ++L   G   + VS   L+N  CK+     A   
Sbjct: 994  PDTITFTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKL 1053

Query: 145  LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
            L +I  ++  PDVV    +I  LC     ++A GLF +         +  +V+ Y ++I 
Sbjct: 1054 LRKIDGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNV----KGISADVVTYNTLIY 1109

Query: 205  GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
            G C  G + +   L   M  + I P+   YN L+   C     ++ K     +L +  + 
Sbjct: 1110 GFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALC-----KEGKDLLDESLSMLSKM 1164

Query: 265  VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
             + NG     C  + +++  II++L +    DK ++L  +M +RG++
Sbjct: 1165 ED-NG-----CKANAVTFEIIISALFEKDENDKVEKLLHEMIARGLL 1205


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 148/494 (29%), Positives = 249/494 (50%), Gaps = 76/494 (15%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           M+ ++ TP +  FN ++G+L   K+Y   I L +++   G+ PD  +LNIL+NCFC +  
Sbjct: 1   MLLVRDTPPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQ 60

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI---- 193
           ++ +F  LG+IL+  + P+ +TL  L++GLC++G+  ++     K VA   + + +    
Sbjct: 61  MTFSFTVLGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYAT 120

Query: 194 ---------------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
                                      PNV+ Y +IIDGLCKD  VN+   L+ +M  RG
Sbjct: 121 LLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARG 180

Query: 227 IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII 286
           I+P+   Y++LI  +C A       G    A  L  E +  N       +P+V +Y  ++
Sbjct: 181 IFPNVITYSTLIYGFCLA-------GQLMEAFGLLNEMILKN------INPNVYTYTILM 227

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           ++LCK+  V +AK L   M   G+ P+VV Y++L+DGYCL+G + +A+++F ++  +G  
Sbjct: 228 DALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVN 287

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC----ILEAAEL 393
           P+  SYN +I+   K ++V+EA++L  E++   + P         D  C    I  A +L
Sbjct: 288 PNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDL 347

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
            + +++     D+  +  L+D LCK+  L  A  LF K+   G +PN  TYT +I GLC 
Sbjct: 348 LKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCK 407

Query: 454 EGGIEKAYDLLPDMEEK----------------IRECL--KAIELLHKMAKRYVKPDEIT 495
            G  + A  L   +  K                 +E +  +A+ +  KM +    PD +T
Sbjct: 408 GGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVT 467

Query: 496 VS-ILEELLNKDEN 508
              I+  L  KD+N
Sbjct: 468 FEIIIRSLFEKDQN 481



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 112/394 (28%), Positives = 195/394 (49%), Gaps = 43/394 (10%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ V  N +++  CK   V++A+     +  +   P+V+T   LI G C+ G+  EA GL
Sbjct: 148 PNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGL 207

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             + +      N+ PNV  Y  ++D LCK+G V + + L   M   G+ P+   YN+L+ 
Sbjct: 208 LNEMIL----KNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMD 263

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            YC     ++AK       ++    V    + GV  +P+V SY  +I+ LCK   VD+A 
Sbjct: 264 GYCLIGEVQNAK-------QMFHTMV----QKGV--NPNVYSYNIMIDRLCKSKRVDEAM 310

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            L  ++  + ++P+ V YSSLIDG+C +GRI  A  L   +   G   D  +Y +L+++ 
Sbjct: 311 NLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDAL 370

Query: 360 SKIEKVEEALSLYGEMISMGVRPDN---SCILE----------AAELFRTLHNTKFELDL 406
            K + +++A +L+ +M   G++P+    + +++          A +LF+ L      +++
Sbjct: 371 CKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINV 430

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             +N ++ GLCK   L  A  +  K+   G  P+ VT+ ++I  L  +   +KA  LL +
Sbjct: 431 WTYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLHE 490

Query: 467 M-------------EEKIRECLKAIELLHKMAKR 487
           M             E    E  KA +LLH+M  +
Sbjct: 491 MIAKDLLRFRDFHGERSPNENDKAEKLLHEMIAK 524



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 92/411 (22%), Positives = 166/411 (40%), Gaps = 91/411 (22%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P  +  N ++    KM     A     ++  K   PD+ TL  LI   C  G+ T +  +
Sbjct: 8   PPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTV 67

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             K +    +PN I                                         N+L++
Sbjct: 68  LGKILKLGYQPNTI---------------------------------------TLNTLMK 88

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C        KG    +L  H++ V    ++      D +SY +++N LCK      A 
Sbjct: 89  GLCL-------KGEVKKSLHFHDKVVAQGFQM------DQVSYATLLNGLCKIGETRSAL 135

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           +L   ++ R   P+VV+Y+++IDG C    +++A  L+  +++ G  P+  +Y+TLI  +
Sbjct: 136 KLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGF 195

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
               ++ EA  L  EMI   + P+                      +  +  L+D LCK 
Sbjct: 196 CLAGQLMEAFGLLNEMILKNINPN----------------------VYTYTILMDALCKE 233

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIE 479
            +++ A  L   + + G +PNVV+Y  ++ G C+ G ++ A                  +
Sbjct: 234 GKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAK-----------------Q 276

Query: 480 LLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           + H M ++ V P+  + +I+ + L K +   E MNLL   L +N   + +T
Sbjct: 277 MFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVT 327


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 159/546 (29%), Positives = 261/546 (47%), Gaps = 77/546 (14%)

Query: 27  PISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSK-SGEVELNDALCFFNYMIHMQPTP 85
           P    S     + H N +     K   + Y S ++      +++DA+  FN ++    TP
Sbjct: 24  PKKFQSFQFLKNTHFNFIPYSSSKINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTP 83

Query: 86  FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVAL 145
               FN +LG+L   K+Y   + LS+++   G+ P+ V+ NIL+NCFC++  +  AF   
Sbjct: 84  PAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVF 143

Query: 146 GRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA----FD-----------CRP 190
            +IL+  + PD +T   L +GLC++G+  +A     K VA    FD           C+ 
Sbjct: 144 AKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKV 203

Query: 191 N----------------VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVY 234
                            V PNV+ Y +IID +CK   VN+   LF +M  +GI PD   Y
Sbjct: 204 GETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTY 263

Query: 235 NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294
           ++LI  +C     +D       A++L  + +  N        PDV ++  ++N+ CKD  
Sbjct: 264 SALISGFCILGKLKD-------AIDLFNKMILEN------IKPDVYTFNILVNAFCKDGK 310

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           + + K +F  M  +GI P+ V Y+SL+DGYCL+  ++ A+ +F ++   G  PD  SY+ 
Sbjct: 311 MKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSI 370

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTK 401
           +IN + KI+K +EA++L+ EM    + PD             +  I  A +L   +H+  
Sbjct: 371 MINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRG 430

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
              ++  +N ++D LCK+ ++  A  L  K    G +P++ TY+++I GLC  G +E A 
Sbjct: 431 VPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDAR 490

Query: 462 DLLPDMEEKIRE-------------CL-----KAIELLHKMAKRYVKPDEITVS-ILEEL 502
            +  D+  K                C+     +A+ LL KM      PD  T   I+  L
Sbjct: 491 KVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSL 550

Query: 503 LNKDEN 508
             KDEN
Sbjct: 551 FKKDEN 556



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 163/334 (48%), Gaps = 18/334 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L DA+  FN MI     P + +FN L+ A            + + +   G+ P+FV+ N
Sbjct: 275 KLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYN 334

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            LM+ +C +  V+ A      + +   +PD+ +   +I G C   KF EA  LF +    
Sbjct: 335 SLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEM--- 391

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             R N+IP+V+ Y+S+IDGL K G ++    L   M  RG+ P+   YNS++   C    
Sbjct: 392 -HRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALC---- 446

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                     A+ L  +F +   +      PD+ +Y  +I  LC+   ++ A+++F D+ 
Sbjct: 447 ---KTHQVDKAIALLTKFKDKGFQ------PDISTYSILIKGLCQSGKLEDARKVFEDLL 497

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            +G   DV  Y+ +I G+C+ G  ++A  L   +E  GCIPD  +Y  +I S  K ++ +
Sbjct: 498 VKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDEND 557

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNT 400
            A  L  EMI+ G+ P N   L    L +T H T
Sbjct: 558 MAEKLLREMIARGL-PLNFYDLYLTRLAQTWHGT 590



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 99/420 (23%), Positives = 182/420 (43%), Gaps = 57/420 (13%)

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           +F+S +     F     V DA     R+LR+  +P       ++  L     +     L 
Sbjct: 49  NFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLS 108

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            K      +PN++   I    +I+  C+ G +     +F  +   G  PD   + +L + 
Sbjct: 109 QKMEFRGIKPNLVNCNI----LINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKG 164

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
            C        KG    A   H++ V     LG   H D +SY ++I+ LCK      A +
Sbjct: 165 LCL-------KGQIQQAFLFHDKVV----ALGF--HFDQISYGTLIHGLCKVGETRAALD 211

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           L   +    + P+VV+Y+++ID  C +  +++A  LF  + S+G  PD  +Y+ LI+ + 
Sbjct: 212 LLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFC 271

Query: 361 KIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
            + K+++A+ L+ +MI   ++PD                      +  FN LV+  CK  
Sbjct: 272 ILGKLKDAIDLFNKMILENIKPD----------------------VYTFNILVNAFCKDG 309

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL---------PDMEE-- 469
           +++    +F  + + G +PN VTY  ++ G C+   + KA  +          PD++   
Sbjct: 310 KMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYS 369

Query: 470 -------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
                  KI++  +A+ L  +M ++ + PD +T S L + L+K       + L+     R
Sbjct: 370 IMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDR 429


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score =  232 bits (592), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 142/446 (31%), Positives = 225/446 (50%), Gaps = 52/446 (11%)

Query: 66  VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
           +   DAL  F  M+  QP P +  F  LL A+A  + Y   I  S+++   G+  D  S 
Sbjct: 44  IRFEDALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSF 103

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
            IL++CFC+   +S A   LG++++  + P +VT G L+ G C++ +  +A  L    V 
Sbjct: 104 TILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMV- 162

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG-IYPDAFVYNSLIRVYCCA 244
              +    PNV+ Y ++ID LCK+G VN    L  +M+ +G +  D   YN+L+   C +
Sbjct: 163 ---KSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYS 219

Query: 245 VNWEDA----------------------------KGNTSAALELHEEFVNGNGELGVICH 276
             W  A                            +GN   A EL+++ +  +        
Sbjct: 220 GEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSS------IG 273

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+ ++Y S+IN LC    +  AK+ F  M S+G  P+VV Y++LI+G+C   R++D  KL
Sbjct: 274 PNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKL 333

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--NSCIL------ 388
           F  +  EG + DT +YNTLI+ Y ++ K+  A  ++  M+S GV PD    CIL      
Sbjct: 334 FQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCV 393

Query: 389 -----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                 A   F  + + +  L +  +N ++ GLCK+ ++  AWELF +LP  G +P+  T
Sbjct: 394 NGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDART 453

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEE 469
           YT+MI GLC  G   +A +L   M+E
Sbjct: 454 YTIMILGLCKNGPRREADELFRRMKE 479



 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 122/418 (29%), Positives = 218/418 (52%), Gaps = 30/418 (7%)

Query: 66  VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
           ++ +DA   F  M+  +P P +  F  +L A+A    +   I L  ++  +G+  D  S 
Sbjct: 594 IKFDDAFGLFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSF 653

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
            IL++CFC+    S A   LG++++  F P +VTLG L+ G C   +F EA  L      
Sbjct: 654 TILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAE 713

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
                 + PNV+ Y ++I+GLCK+  +N    +F  M+ +GI  DA  YN+LI   C + 
Sbjct: 714 L----GLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSG 769

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
            W DA         L  + V    +      P+V+ + ++I++  K+  + +AK L+ +M
Sbjct: 770 RWTDAA-------RLLRDMVKRKID------PNVIFFTALIDTFVKEGNLLEAKNLYKEM 816

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
             R + P+++ Y+SLI+G+C+ GR+ DA+ +F  + S+GC PD  +YNTLI  + K ++V
Sbjct: 817 IRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRV 876

Query: 366 EEALSLYGEMISMGVRPD----NSCILE---------AAELFRTLHNTKFELDLTVFNCL 412
           E+ + L+ EM   G+  D    N+ I           A ++F  + +     D+  +N L
Sbjct: 877 EDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNIL 936

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           +D LC + ++  A  + + L +   + +++TY ++I G+C    +++A+ L   +  K
Sbjct: 937 LDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRK 994



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 155/341 (45%), Gaps = 26/341 (7%)

Query: 67   ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            +LN+AL  F  M          ++N+L+  L     + +   L   +    + P+ +   
Sbjct: 735  DLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFT 794

Query: 127  ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
             L++ F K   + +A      ++R+   P+++T   LI G C+QG+  +A  +F   V+ 
Sbjct: 795  ALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSK 854

Query: 187  DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             C     P+V+ Y ++I G CK   V     LF +M  +G+  DAF YN+LI  YC A  
Sbjct: 855  GC----FPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQA-- 908

Query: 247  WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                       L + ++  N   + GV   PD+++Y  +++ LC +  ++KA  +  D++
Sbjct: 909  ---------GKLNVAQKVFNRMVDCGV--PPDIVTYNILLDCLCNNGKIEKALVMVEDLQ 957

Query: 307  SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
               +  D++ Y+ +I G C   ++ +A  LF S+  +G   D  +Y T+I+   +     
Sbjct: 958  KNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRR 1017

Query: 367  EALSLYGEMISMGVRPDNSCILE---------AAELFRTLH 398
            EA  L   M   G  P      E         +AEL + +H
Sbjct: 1018 EADKLCTRMKEDGFMPSERIYDETLRDHYTSLSAELIKAVH 1058



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 119/261 (45%), Gaps = 17/261 (6%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD  +   L++ F K   + +A     ++L+    P+ VT   LI GLCM G+   A   
Sbjct: 239 PDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKT 298

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F    +  C     PNV+ Y ++I+G CK   V     LF  M   G+  D F YN+LI 
Sbjct: 299 FDLMASKGC----FPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIH 354

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            YC         G    A ++    V+     GV   PD++++C +++ LC +  +  A 
Sbjct: 355 GYC-------QVGKLRVAKDIFSWMVS----CGVT--PDIITHCILLHGLCVNGEIGSAM 401

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
             F DM+S      +V Y+ +I G C   ++++A +LF  +  EG  PD  +Y  +I   
Sbjct: 402 VKFNDMRSGEKYLGIVAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGL 461

Query: 360 SKIEKVEEALSLYGEMISMGV 380
            K     EA  L+  M   G+
Sbjct: 462 CKNGPRREADELFRRMKEDGI 482



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 111/439 (25%), Positives = 180/439 (41%), Gaps = 59/439 (13%)

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           V+ NI+++  CK   V +A+    R+  +   PD  T   +I GLC  G   EA  LF +
Sbjct: 417 VAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELFRR 476

Query: 183 FVAFDCRPNVIPNVICYASIIDG-LCKDGFVNKVR---VLFLDMKGRGI---------YP 229
                        +IC A   DG L + G  N+V    ++    + R I         Y 
Sbjct: 477 MKE--------DGIICQAE--DGHLGEHGTNNQVSLGTIIICPKRRRSIMESGDLYYYYS 526

Query: 230 DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG-----NGELGVICHPDVLSYCS 284
           D  +++SL+ +   A +    KG     L L E   N      +G      H     Y  
Sbjct: 527 DTTLWSSLVGLIPIASS-SSVKGFVRRHLLLLERGNNPESRSFSGASHHHHHHHHHHYRE 585

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
            + S    +  D A  LF +M     IP +V ++ ++     M + D    LF  +E+ G
Sbjct: 586 RLRSELHCIKFDDAFGLFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLG 645

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP-------------DNSCILEAA 391
              D  S+  LI+ + +  +   AL+L G+M+ +G +P               +   EA 
Sbjct: 646 ISHDLYSFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAV 705

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
            L  ++     E ++ ++N +++GLCK+  L +A E+F  + + G   + VTY  +I GL
Sbjct: 706 SLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGL 765

Query: 452 CIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHE 511
           C  G    A  LL D                 M KR + P+ I  + L +   K+ N  E
Sbjct: 766 CNSGRWTDAARLLRD-----------------MVKRKIDPNVIFFTALIDTFVKEGNLLE 808

Query: 512 CMNLLPSFLSRNQEESKLT 530
             NL    + R+   + LT
Sbjct: 809 AKNLYKEMIRRSVHPNILT 827


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 154/541 (28%), Positives = 251/541 (46%), Gaps = 116/541 (21%)

Query: 38  SLHSNSVSTVEEKTKLLKYLSENSKSGEVEL--NDALCFFNYMIHMQPTPFMPSFNSLLG 95
           S +    S+V +    + Y  E  +SG V++  +DA+  F  M   +P P +  F+ L  
Sbjct: 22  SCYGRVFSSVSDGKGKVSY-RERLRSGIVDIKEDDAVDLFQEMTRSRPRPRLIDFSRLFS 80

Query: 96  ALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSP 155
            +A  K Y   + L +++   G+  +  +L+I++NC C+   +S AF A+G+I++  + P
Sbjct: 81  VVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEP 140

Query: 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI---------------------- 193
           D VT   LI GLC++G+ +EA  L  + V    +P +I                      
Sbjct: 141 DTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLI 200

Query: 194 ---------PNVICYASII-----------------------------------DGLCKD 209
                    PN + Y  ++                                   DGLCKD
Sbjct: 201 DRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKD 260

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA------------------- 250
           G ++    LF +M+ +G   D  +Y +LIR +C A  W+D                    
Sbjct: 261 GSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAF 320

Query: 251 ---------KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
                    +G    A ELH+E +    + G+   PD ++Y S+I+  CK+  +DKA  +
Sbjct: 321 SALIDCFVKEGKLREAEELHKEMI----QRGI--SPDTVTYTSLIDGFCKENQLDKANHM 374

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
              M S+G  P++  ++ LI+GYC    IDD  +LF  +   G + DT +YNTLI  + +
Sbjct: 375 LDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 434

Query: 362 IEKVEEALSLYGEMISMGVRP-------------DNSCILEAAELFRTLHNTKFELDLTV 408
           + K+E A  L+ EM+S  VRP             DN    +A E+F  +  +K ELD+ +
Sbjct: 435 LGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGI 494

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +N ++ G+C + ++  AW+LF  LP  G +P+V TY +MI GLC +G + +A  L   ME
Sbjct: 495 YNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKME 554

Query: 469 E 469
           E
Sbjct: 555 E 555



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 167/383 (43%), Gaps = 40/383 (10%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           + PD V+ + L++CF K   + +A      ++++  SPD VT   LI G C + +  +A+
Sbjct: 313 ITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKAN 372

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            +    V+  C PN+      +  +I+G CK   ++    LF  M  RG+  D   YN+L
Sbjct: 373 HMLDLMVSKGCGPNIRT----FNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTL 428

Query: 238 IRVYCCAVNWEDAK----------------------------GNTSAALELHEEFVNGNG 269
           I+ +C     E AK                            G    ALE+ E+      
Sbjct: 429 IQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKM 488

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
           EL      D+  Y  II+ +C    VD A +LF  +  +G+ PDV  Y+ +I G C  G 
Sbjct: 489 EL------DIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGS 542

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE 389
           + +A  LF  +E +G  P+  +YN LI ++       ++  L  E+   G   D S +  
Sbjct: 543 LSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRF 602

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLC--KSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
           A      +     E D+  F  L+   C  ++  +  A  LFK +   G +PNVVTY  +
Sbjct: 603 ALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYKPNVVTYNTV 662

Query: 448 ICGLCIEGGIEKAYDLLPDMEEK 470
           I GL     I +   +L  M E+
Sbjct: 663 IKGLLNGNMISQVPGVLDQMFER 685



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 110/286 (38%), Gaps = 44/286 (15%)

Query: 64  GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV 123
           G++E+   L  F  M+  +  P + S+  LL  L         + + E++    +  D  
Sbjct: 436 GKLEVAKEL--FQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIG 493

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
             NI+++  C    V DA+     +  K   PDV T   +I GLC +G  +EA  LF K 
Sbjct: 494 IYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKM 553

Query: 184 VAFDCRPN-VIPNVICYASIIDG-----------LCKDGFVNKVRVL------FLDMKGR 225
                 PN    N++  A + +G           + + GF      L         M   
Sbjct: 554 EEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLARMLKA 613

Query: 226 GIYPDAFVYNSLIRVYCCAVNWE--DA------------KGNTSAALELHEEFVNGN--- 268
           G  PD F + +L+R +C   N    DA            K N      + +  +NGN   
Sbjct: 614 GHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMIS 673

Query: 269 ---GELGVI----CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
              G L  +    C P+ ++  + I+ LCK  L   A  L   M++
Sbjct: 674 QVPGVLDQMFERGCQPNAVTKSTFISGLCKQDLHGSAILLLRKMEN 719


>gi|356510925|ref|XP_003524184.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 157/509 (30%), Positives = 256/509 (50%), Gaps = 77/509 (15%)

Query: 29  SLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVE-LNDALCFFNYMIHMQPTPFM 87
           S N+++  S  HSN        T+LL  +     SG+++ +++AL  F  M  M+P P +
Sbjct: 26  STNTDDTES--HSNG-------TQLLISMRNLCWSGKLKNIDEALDLFQGMARMKPLPSV 76

Query: 88  PSFNSLLGALAGKKYYVNFICLSERL-NTIGLLPDFVSLNILMNCFCKMIGVSDAFVALG 146
             F  LLGA+   K+Y   I L + + +++G+  D ++LNI++NC C++  V+  F  LG
Sbjct: 77  KDFTLLLGAIVRLKHYTTAISLVKHMFSSLGIEADTITLNIVINCLCRLKLVAFGFSVLG 136

Query: 147 RILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL-------------FTKFVAFD--CRP- 190
            + +    P V+TL  LI GLC+QG   +A GL             +T  V  +  C+  
Sbjct: 137 TMFKLGLEPTVMTLTTLINGLCVQGNVAQAVGLADHMEKMWYPLDVYTYGVLINGLCKTG 196

Query: 191 ---------------NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
                          N  PNV+ Y++I+DGLCKDG V++   L  +M G+G+ P+   Y 
Sbjct: 197 DTLAAVGWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMNGKGVRPNLVTYA 256

Query: 236 SLIRVYCCAVNWEDA--------KGNTSAALELHEEFVNGNGELGVICH----------- 276
            LI+  C    W++A        K      L++    V+   + G +             
Sbjct: 257 CLIQGLCNFGRWKEAGSLLDEMMKMGMRPDLQMLNILVDAFCKEGKVMQAKSVIGFMILT 316

Query: 277 ---PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
              PDV +Y S+I+  C    +++A  +F  M SRG +PD+VV++SLI G+C    I+ A
Sbjct: 317 GEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCKDKNINKA 376

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-NSCIL---- 388
             L   +   G +PD +++ TLI  + +  +   A  L+  M   G  P+  +C +    
Sbjct: 377 MHLLEEMSKMGFVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDG 436

Query: 389 --------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
                   EA  L + +  +  +L++ +++ L+DG+C + +L +AWELF  LP  G + N
Sbjct: 437 LCKENLLSEAVSLAKAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQIN 496

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           V  YT+MI GLC +G ++KA DLL +MEE
Sbjct: 497 VYIYTIMIKGLCKQGSLDKAEDLLINMEE 525



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 86/222 (38%), Gaps = 40/222 (18%)

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI-ESEGCIPDTSSYN 353
           +D+A +LF  M     +P V  ++ L+     +     A  L   +  S G   DT + N
Sbjct: 57  IDEALDLFQGMARMKPLPSVKDFTLLLGAIVRLKHYTTAISLVKHMFSSLGIEADTITLN 116

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLV 413
            +IN   +++ V    S+ G M  +G+ P                       +     L+
Sbjct: 117 IVINCLCRLKLVAFGFSVLGTMFKLGLEPT----------------------VMTLTTLI 154

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
           +GLC    +  A  L   + +     +V TY V+I GLC  G                 +
Sbjct: 155 NGLCVQGNVAQAVGLADHMEKMWYPLDVYTYGVLINGLCKTG-----------------D 197

Query: 474 CLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
            L A+  L KM +R  KP+ +  S + + L KD    E +NL
Sbjct: 198 TLAAVGWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNL 239


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 140/446 (31%), Positives = 230/446 (51%), Gaps = 57/446 (12%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           +DA+  FN+M H+ PTP    FN +L +L   K Y   I L +++    + PD+ +LNI+
Sbjct: 40  DDAVSQFNHMFHVHPTPHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNII 99

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           +NCFC    V  AF  + +IL+  + P+ +TL  L++GLC++GK  EA     K +A   
Sbjct: 100 INCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGF 159

Query: 189 RPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVRV 217
           R + I                               PNV+ Y+ IID LCKD  V++   
Sbjct: 160 RLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYD 219

Query: 218 LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277
           L+ +M G+GI PD   Y+ L+  +C         G  + A++L  E V  N       +P
Sbjct: 220 LYTEMVGKGISPDVVTYSILVSGFCIV-------GQLNRAIDLLNEMVLEN------INP 266

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           D+ +Y  ++++LCK+  V +A+ +   M    +  DVVVYS+L+DGYCL+  +++A+++F
Sbjct: 267 DIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVF 326

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN-------SCILEA 390
            ++   G  PD   Y+ +IN   KI++V+EAL+L+ E+    + PD         C+ ++
Sbjct: 327 YTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKS 386

Query: 391 A------ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
                  +LF  + +     D+  +N L+D LCK+  L  A  LF K+      PNV T+
Sbjct: 387 GRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTF 446

Query: 445 TVMICGLCIEGGIEKAYDLLPDMEEK 470
           T+++ GLC  G ++ A +   D+  K
Sbjct: 447 TILLDGLCKVGRLKNALEFFQDLLTK 472



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 135/272 (49%), Gaps = 23/272 (8%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD  +  IL++  CK   V +A   L  +++   + DVV    L+ G C+  +   A  +
Sbjct: 266 PDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRV 325

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F           V P+V CY+ +I+GLCK   V++   LF ++  + + PD   Y SLI 
Sbjct: 326 FYTMTQM----GVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLID 381

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C         G  S   +L +E ++          PDV++Y ++I++LCK+  +D+A 
Sbjct: 382 CLC-------KSGRISYVWDLFDEMLDRGQP------PDVITYNNLIDALCKNGHLDRAI 428

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            LF  MK + I P+V  ++ L+DG C +GR+ +A + F  + ++G   +  +Y  +IN  
Sbjct: 429 ALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGL 488

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAA 391
            K   ++EAL+L   M       DN CI +A 
Sbjct: 489 CKEGLLDEALALQSRM------EDNGCISDAV 514



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 153/322 (47%), Gaps = 33/322 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIGLLP---- 120
           +LN A+   N M+     P + ++  L+ AL   GK        + E  N + ++     
Sbjct: 248 QLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGK--------VKEAENVLAVMVKACV 299

Query: 121 --DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
             D V  + LM+ +C +  V++A      + +   +PDV     +I GLC   +  EA  
Sbjct: 300 NLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALN 359

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           LF +      + N++P+ + Y S+ID LCK G ++ V  LF +M  RG  PD   YN+LI
Sbjct: 360 LFEEI----HQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLI 415

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
              C         G+   A+ L  +  +          P+V ++  +++ LCK   +  A
Sbjct: 416 DALC-------KNGHLDRAIALFNKMKDQ------AIRPNVYTFTILLDGLCKVGRLKNA 462

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
            E F D+ ++G   +V  Y+ +I+G C  G +D+A  L   +E  GCI D  ++  +I +
Sbjct: 463 LEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMIRA 522

Query: 359 YSKIEKVEEALSLYGEMISMGV 380
           +   ++ ++A  L  EMI+ G+
Sbjct: 523 FFDKDENDKAEKLVREMIARGL 544


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 154/541 (28%), Positives = 251/541 (46%), Gaps = 116/541 (21%)

Query: 38  SLHSNSVSTVEEKTKLLKYLSENSKSGEVEL--NDALCFFNYMIHMQPTPFMPSFNSLLG 95
           S +    S+V +    + Y  E  +SG V++  +DA+  F  M   +P P +  F+ L  
Sbjct: 22  SCYGRVFSSVSDGKGKVSY-RERLRSGIVDIKEDDAVDLFQEMTRSRPRPRLIDFSRLFS 80

Query: 96  ALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSP 155
            +A  K Y   + L +++   G+  +  +L+I++NC C+   +S AF A+G+I++  + P
Sbjct: 81  VVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEP 140

Query: 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI---------------------- 193
           D VT   LI GLC++G+ +EA  L  + V    +P +I                      
Sbjct: 141 DTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLI 200

Query: 194 ---------PNVICYASII-----------------------------------DGLCKD 209
                    PN + Y  ++                                   DGLCKD
Sbjct: 201 DRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKD 260

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA------------------- 250
           G ++    LF +M+ +G   D  +Y +LIR +C A  W+D                    
Sbjct: 261 GSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAF 320

Query: 251 ---------KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
                    +G    A ELH+E +    + G+   PD ++Y S+I+  CK+  +DKA  +
Sbjct: 321 SALIDCFVKEGKLREAEELHKEMI----QRGI--SPDTVTYTSLIDGFCKENQLDKANHM 374

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
              M S+G  P++  ++ LI+GYC    IDD  +LF  +   G + DT +YNTLI  + +
Sbjct: 375 LDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 434

Query: 362 IEKVEEALSLYGEMISMGVRP-------------DNSCILEAAELFRTLHNTKFELDLTV 408
           + K+E A  L+ EM+S  VRP             DN    +A E+F  +  +K ELD+ +
Sbjct: 435 LGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGI 494

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +N ++ G+C + ++  AW+LF  LP  G +P+V TY +MI GLC +G + +A  L   ME
Sbjct: 495 YNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKME 554

Query: 469 E 469
           E
Sbjct: 555 E 555



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 151/323 (46%), Gaps = 33/323 (10%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           + PD V+ + L++CF K   + +A      ++++  SPD VT   LI G C + +  +A+
Sbjct: 313 ITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKAN 372

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            +    V+  C PN+      +  +I+G CK   ++    LF  M  RG+  D   YN+L
Sbjct: 373 HMLDLMVSKGCGPNIRT----FNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTL 428

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           I+ +C         G    A EL +E V+          PD++SY  +++ LC +   +K
Sbjct: 429 IQGFC-------ELGKLEVAKELFQEMVSRR------VRPDIVSYKILLDGLCDNGEPEK 475

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A E+F  ++   +  D+ +Y+ +I G C   ++DDA  LF S+  +G  PD  +YN +I 
Sbjct: 476 ALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIG 535

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCI--------------LEAAELFRTLHNTKFE 403
              K   + EA  L+ +M   G  P N C                ++A+L   +    F 
Sbjct: 536 GLCKKGSLSEADLLFRKMEEDGHSP-NGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFS 594

Query: 404 LDLTVFNCLVDGLCKSWRLRSAW 426
           +D +    +VD L    RL+ ++
Sbjct: 595 VDASTVKMVVDML-SDGRLKKSF 616


>gi|449491568|ref|XP_004158939.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 412

 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 156/458 (34%), Positives = 225/458 (49%), Gaps = 97/458 (21%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           ++  GL PD  +LNIL NC C +  VS+   A+  ILR+ + PD+VT   LI+GLC   +
Sbjct: 1   MHLAGLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLCRVHR 60

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
            + A+ +                      IIDGLCK G  ++ + +F +MK +G+ P+  
Sbjct: 61  ISVATCI----------------------IIDGLCKVGHEDEAKEIFEEMKAQGMIPNVI 98

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            Y+SL+  +CCA   E++K        L  E V+     GV   P+++ +  +I+ LCK+
Sbjct: 99  SYSSLVHGFCCAGKLEESK-------RLFNEMVDQ----GV--QPNLVQFNVLIDILCKE 145

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             V +AK+L      RGII D+V Y+SLIDG+C +G +  ARKLF+S+ S+GC  +  SY
Sbjct: 146 GKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSSARKLFLSMPSKGCEHNEISY 205

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPD----------------------------- 383
             LIN Y KI KVEEA++LY EM  +G RP+                             
Sbjct: 206 TILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKA 265

Query: 384 -----NSCI--------------LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
                +SCI               EA ELF  L +  F+LD   ++ L+DGLCK+ ++  
Sbjct: 266 SGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEI 325

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKM 484
           AWE FK+L + G +PNVVT  +MI G C    ++KA  L   ME              KM
Sbjct: 326 AWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKME--------------KM 371

Query: 485 AKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
            +    PD IT + L     +     E +NLL     R
Sbjct: 372 EENGCTPDIITYNTLLRGFCESNKLEEVVNLLHKMFKR 409



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 169/366 (46%), Gaps = 42/366 (11%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           E +   G++P+ +S + L++ FC    + ++      ++ +   P++V    LI  LC +
Sbjct: 86  EEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKE 145

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           GK  EA     K +    +  +I +++ Y S+IDG CK G ++  R LFL M  +G   +
Sbjct: 146 GKVIEAK----KLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSSARKLFLSMPSKGCEHN 201

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
              Y  LI  YC     E+       A+ L+ E         V   P+V +Y +++  L 
Sbjct: 202 EISYTILINGYCKIWKVEE-------AMNLYNEMPQ------VGKRPNVKTYSTLLTGLL 248

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           +   V  A +LF  MK+ GI  D  +Y   +DG C  G + +A +LF  ++S     D  
Sbjct: 249 QTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFE 308

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFN 410
           SY+ LI+   K  KVE A   + ++   G++P                      ++   N
Sbjct: 309 SYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQP----------------------NVVTCN 346

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRY---GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            ++ G C+  ++  A  LF+K+ +    G  P+++TY  ++ G C    +E+  +LL  M
Sbjct: 347 IMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCESNKLEEVVNLLHKM 406

Query: 468 EEKIRE 473
            +++R 
Sbjct: 407 FKRMRH 412



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 144/312 (46%), Gaps = 20/312 (6%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L ++   FN M+     P +  FN L+  L  +   +    L E     G++ D V+ N
Sbjct: 112 KLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYN 171

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ FCK+  +S A      +  K    + ++   LI G C   K  EA  L+ +    
Sbjct: 172 SLIDGFCKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQV 231

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             RPNV      Y++++ GL + G V     LF  MK  GI  D+ +Y   +   C    
Sbjct: 232 GKRPNVKT----YSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLC---- 283

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G    A+EL  E  + N +L      D  SY  +I+ LCK   V+ A E F  + 
Sbjct: 284 ---KNGVLFEAMELFNELKSYNFKL------DFESYSRLIDGLCKAGKVEIAWEFFKQLS 334

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLF---VSIESEGCIPDTSSYNTLINSYSKIE 363
             G+ P+VV  + +I G+C + ++D A  LF     +E  GC PD  +YNTL+  + +  
Sbjct: 335 QEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCESN 394

Query: 364 KVEEALSLYGEM 375
           K+EE ++L  +M
Sbjct: 395 KLEEVVNLLHKM 406


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 137/404 (33%), Positives = 216/404 (53%), Gaps = 39/404 (9%)

Query: 66  VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
           ++L+D+L  F +M+  +P P +  F+ LL A++  K Y   I L E++  +G+  +  + 
Sbjct: 60  MKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTC 119

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           NIL+NCFC+   +S A   LG++++    PD+VT G L+ G C   +  +A  +F + V 
Sbjct: 120 NILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVE 179

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
               PNV+     Y +IIDGLCK   V+    L   M+  GI PDA  YNSLI   C + 
Sbjct: 180 MGYEPNVV----IYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSG 235

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
            W+DA    S   +                +PDV ++ ++I++  K+  + +A+EL+ +M
Sbjct: 236 RWDDATRMVSCMTKRE-------------IYPDVFTFNALIDACVKEGRISEAEELYEEM 282

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
             R + PD+V YS LI G C+  R+D+A ++F  + S+GC PD  +Y+ LIN Y K +KV
Sbjct: 283 IRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKV 342

Query: 366 EEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
           E  + L+ EM   GV                + NT        +  L+ G C++ +L  A
Sbjct: 343 EHGMKLFCEMSQRGV----------------VRNT------VTYTVLIQGYCRAGKLNVA 380

Query: 426 WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
            E+FK +   G  PN++TY V++ GLC  G IEKA  +L DM++
Sbjct: 381 EEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQK 424



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 159/352 (45%), Gaps = 53/352 (15%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DAL  F+ M+ M   P +  +N+++  L   K   N + L  R+   G+ PD V+ N L+
Sbjct: 169 DALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLI 228

Query: 130 NCFC---------KMI----------------GVSDAFVALGRI----------LRKVFS 154
           +  C         +M+                 + DA V  GRI          +R+   
Sbjct: 229 SGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLD 288

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
           PD+VT   LI GLCM  +  EA  +F   V+  C     P+V+ Y+ +I+G CK   V  
Sbjct: 289 PDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGC----FPDVVTYSILINGYCKSKKVEH 344

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
              LF +M  RG+  +   Y  LI+ YC            +  L + EE        GV 
Sbjct: 345 GMKLFCEMSQRGVVRNTVTYTVLIQGYC-----------RAGKLNVAEEIFKWMVFCGV- 392

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
             P++++Y  +++ LC +  ++KA  +  DM+  G+  D+V Y+ +I G C  G + DA 
Sbjct: 393 -PPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAW 451

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC 386
            L+ S+  +G  PD  +Y  ++    K     EA +L+ +M   G+ P N C
Sbjct: 452 DLYCSLNLKGLTPDIWTYTAMMLGLYKKGLRGEADALFRKMKEDGILP-NEC 502



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 110/236 (46%), Gaps = 31/236 (13%)

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           +D + +LF  M     +P +  +S L+     M + D    L+  ++  G   +  + N 
Sbjct: 62  LDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNI 121

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTK 401
           L+N + +  ++  ALS  G+M+ +G  PD                I +A  +F  +    
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMG 181

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
           +E ++ ++N ++DGLCKS ++ +A +L  ++   G  P+ VTY  +I GLC  G  + A 
Sbjct: 182 YEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDAT 241

Query: 462 DLLPDMEEK------------IRECLK------AIELLHKMAKRYVKPDEITVSIL 499
            ++  M ++            I  C+K      A EL  +M +R + PD +T S+L
Sbjct: 242 RMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLL 297


>gi|449458524|ref|XP_004146997.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Cucumis sativus]
          Length = 481

 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 164/525 (31%), Positives = 244/525 (46%), Gaps = 75/525 (14%)

Query: 1   MPSSSPATSRTAFKVKPSSSLRNSKKPISLNSENEPSSLHSNSVSTVEEKTKLLKYLSEN 60
           +PSS P TS T           N   PI L       + +   +S     +  L+    N
Sbjct: 26  IPSSVPQTSST-----------NHPNPILL-------AFNDRGISFQHRLSSFLR----N 63

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
            K+G +++  A  FF+ M+   P P + SFN LLG LA   +Y     L  ++   GL P
Sbjct: 64  CKTGNIDVIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNKMRLAGLSP 123

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR---GLCMQGKFTEAS 177
           D  +LNIL NC C +  VS+   A+  ILR+ + PD+VT   LI+   GLC  G   EA 
Sbjct: 124 DLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLYGLCKVGHEDEAK 183

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            +F +  A      +IPNVI Y+S++ G C  G + + + LF +M  +G+ P+   +N L
Sbjct: 184 EIFEEMKA----QGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVL 239

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           I + C     E   G+ S+A +L     +        C  + +SY  +IN  CK   V++
Sbjct: 240 IDILC----KEGKIGDLSSARKLFLSMPSKG------CEHNEISYTILINGYCKIWKVEE 289

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A  L+ +M   G  P+V  YS+L+ G    G++ DA KLF  +++ G   D+  Y   ++
Sbjct: 290 AMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLD 349

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
              K                      N  + EA ELF  L +  F+LD   ++ L+DGLC
Sbjct: 350 GLCK----------------------NGVLFEAMELFNELKSYNFKLDFESYSRLIDGLC 387

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKA 477
           K+ ++  AWE FK+L + G +PNVVT  +MI G C    ++KA  L   ME         
Sbjct: 388 KAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKME--------- 438

Query: 478 IELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
                KM +    PD IT + L     +     E +NLL     R
Sbjct: 439 -----KMEENGCTPDIITYNTLLRGFCESNKLEEVVNLLHKMFKR 478


>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
          Length = 426

 Score =  228 bits (580), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 140/433 (32%), Positives = 215/433 (49%), Gaps = 54/433 (12%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           MI  +P P +  F+ +L  +A  K Y   I L   +   G+  D  S NI++NC C+   
Sbjct: 1   MIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSR 60

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
              A   +G++++  + PDVVT+  LI G C   +  +A  L +K      RP+V+    
Sbjct: 61  FVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVV---- 116

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA------- 250
            Y +IIDG CK G VN    LF  M+  G+  DA  YNSL+   CC+  W DA       
Sbjct: 117 IYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDM 176

Query: 251 ---------------------KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSL 289
                                +G  S A++L+EE             PDV +Y S+IN L
Sbjct: 177 VMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRR------CVDPDVFTYNSLINGL 230

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
           C    VD+AK++   M ++G +PDVV Y++LI+G+C   R+D+  KLF  +   G + DT
Sbjct: 231 CMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDT 290

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRT 396
            +YNT+I  Y +  + + A  ++  M S   RP+             N  + +A  LF  
Sbjct: 291 ITYNTIIQGYFQAGRPDAAQEIFSRMDS---RPNIRTYSILLYGLCMNWRVEKALVLFEN 347

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           +  ++ ELD+T +N ++ G+CK   +  AW+LF+ L   G +P+VV+YT MI G C +  
Sbjct: 348 MQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQ 407

Query: 457 IEKAYDLLPDMEE 469
            +K+  L   M+E
Sbjct: 408 WDKSDLLYRKMQE 420



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 152/315 (48%), Gaps = 20/315 (6%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +NDA+  F+ M          ++NSL+  L     + +   L   +    ++P+ ++   
Sbjct: 131 VNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTA 190

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           +++ F K    S+A      + R+   PDV T   LI GLCM G+  EA  +    V   
Sbjct: 191 VIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKG 250

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C    +P+V+ Y ++I+G CK   V++   LF +M  RG+  D   YN++I+ Y  A   
Sbjct: 251 C----LPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQA--- 303

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               G   AA E+     +          P++ +Y  ++  LC +  V+KA  LF +M+ 
Sbjct: 304 ----GRPDAAQEIFSRMDS---------RPNIRTYSILLYGLCMNWRVEKALVLFENMQK 350

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
             I  D+  Y+ +I G C +G ++DA  LF S+  +G  PD  SY T+I+ + +  + ++
Sbjct: 351 SEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDK 410

Query: 368 ALSLYGEMISMGVRP 382
           +  LY +M   G+ P
Sbjct: 411 SDLLYRKMQEDGLLP 425


>gi|356528294|ref|XP_003532739.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 164/530 (30%), Positives = 259/530 (48%), Gaps = 78/530 (14%)

Query: 9   SRTAFKVKPSSSLRNSKK-PISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVE 67
           SR+     PS SL  SK    S N+ +  S  HSN        T+ L  +    KSG+V+
Sbjct: 5   SRSLSIRSPSFSLFFSKHCHCSTNTYDTDS--HSNG-------TQFLISMRNLCKSGKVK 55

Query: 68  -LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERL-NTIGLLPDFVSL 125
            +++AL  F  M  M+P P +  F  LLG +   K+Y   I L + + +++G+  D ++L
Sbjct: 56  NIDEALDLFQGMASMKPLPSVKDFTLLLGVIVRLKHYTTAISLVKHIFSSLGIEADTITL 115

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL------ 179
           NI++NC C++  V+  F  LG + +    P V+TL  LI GLC+QG   +A GL      
Sbjct: 116 NIVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTALINGLCVQGNVAQAVGLVDHMEK 175

Query: 180 -------FTKFVAFD--CRP----------------NVIPNVICYASIIDGLCKDGFVNK 214
                  +T  V  +  C+                 N  PNV+ Y++I+DGLCKDG V++
Sbjct: 176 MRYPLDVYTYGVLINGLCKTGDTLAAVEWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSE 235

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA--------KGNTSAALELHEEFVN 266
              L  +M G+G+ P+   Y  LI+  C    W++         K      L+     V+
Sbjct: 236 ALNLCSEMSGKGVRPNLVTYACLIQGLCNFGRWKETGSLLDEMIKMGMRLDLQTLNILVD 295

Query: 267 GNGELGVICH--------------PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
              + G +                PDV +Y S+I+  C    +++A  +F  M SRG +P
Sbjct: 296 AFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGCLP 355

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
           D+VV++SLI G+C    I+    L   +   G +PD  ++ TLI  + +  +   A  L+
Sbjct: 356 DIVVFTSLIHGWCKDKNINKVMHLLEEMAKMGFVPDVVTWTTLIGGFCQAGRPLAAKELF 415

Query: 373 GEMISMGVRPD-NSCIL------------EAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
             M   G  P+  +C +            EA  L   +  +  +L++ +++ L+DG+C +
Sbjct: 416 LNMHKYGQVPNLQTCAVILDGLCKGNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGMCSA 475

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
            +L +AWELF  LP  G + NV TYT+MI GLC +G ++KA DLL +MEE
Sbjct: 476 GKLNAAWELFSSLPGKGLQINVYTYTIMIKGLCKQGSLDKAEDLLINMEE 525



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 139/276 (50%), Gaps = 17/276 (6%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L + +  +G+  D  +LNIL++ FCK   V  A   +G ++     PDV T   LI   C
Sbjct: 274 LLDEMIKMGMRLDLQTLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYC 333

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
           +Q K  EA  +F   V+  C    +P+++ + S+I G CKD  +NKV  L  +M   G  
Sbjct: 334 LQNKMNEAMRVFHLMVSRGC----LPDIVVFTSLIHGWCKDKNINKVMHLLEEMAKMGFV 389

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           PD   + +LI  +C A       G   AA EL   F+N + + G +  P++ +   I++ 
Sbjct: 390 PDVVTWTTLIGGFCQA-------GRPLAAKEL---FLNMH-KYGQV--PNLQTCAVILDG 436

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           LCK  L+ +A  L   M+   +  ++V+YS L+DG C  G+++ A +LF S+  +G   +
Sbjct: 437 LCKGNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQIN 496

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
             +Y  +I    K   +++A  L   M   G  PDN
Sbjct: 497 VYTYTIMIKGLCKQGSLDKAEDLLINMEENGCLPDN 532



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 96/244 (39%), Gaps = 43/244 (17%)

Query: 276 HPDVLSYCSIINSLCKDVLV---DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
           H +   +   + +LCK   V   D+A +LF  M S   +P V  ++ L+     +     
Sbjct: 35  HSNGTQFLISMRNLCKSGKVKNIDEALDLFQGMASMKPLPSVKDFTLLLGVIVRLKHYTT 94

Query: 333 ARKLFVSI-ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAA 391
           A  L   I  S G   DT + N +IN   +++ V    S+ G M  +G+ P         
Sbjct: 95  AISLVKHIFSSLGIEADTITLNIVINCLCRLKLVAFGFSVLGTMFKLGLEPT-------- 146

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
                         +     L++GLC    +  A  L   + +     +V TY V+I GL
Sbjct: 147 --------------VMTLTALINGLCVQGNVAQAVGLVDHMEKMRYPLDVYTYGVLINGL 192

Query: 452 CIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHE 511
           C  G                 + L A+E L KM +R  KP+ +  S + + L KD    E
Sbjct: 193 CKTG-----------------DTLAAVEWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSE 235

Query: 512 CMNL 515
            +NL
Sbjct: 236 ALNL 239


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 134/404 (33%), Positives = 214/404 (52%), Gaps = 39/404 (9%)

Query: 66  VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
           ++L+D+L  F +M+  +P P +  F+ LL A++  K Y   I L E++  +G+  +  + 
Sbjct: 60  MKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTC 119

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           NIL+NCFC+   +S A   LG++++    P +VT G L+ G C   +  +A  +F + V 
Sbjct: 120 NILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVG 179

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
              +PNV+     Y +IIDGLCK   V+    L   M+  GI PD   YNSLI   C + 
Sbjct: 180 MGYKPNVV----IYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSG 235

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
            W DA    S   +                +PDV ++ ++I++  K+  V +A+E + +M
Sbjct: 236 RWSDATRMVSCMTKRE-------------IYPDVFTFNALIDACVKEGRVSEAEEFYEEM 282

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
             R + PD+V YS LI G C+  R+D+A ++F  + S+GC PD  +Y+ LIN Y K +KV
Sbjct: 283 IRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKV 342

Query: 366 EEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
           E  + L+ EM   GV                + NT        +  L+ G C++ +L  A
Sbjct: 343 EHGMKLFCEMSQRGV----------------VRNT------VTYTILIQGYCRAGKLNVA 380

Query: 426 WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
            E+F+++   G  PN++TY V++ GLC  G IEKA  +L DM++
Sbjct: 381 EEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQK 424



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 101/352 (28%), Positives = 164/352 (46%), Gaps = 53/352 (15%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DAL  F+ M+ M   P +  +N+++  L   K   N + L  R+   G+ PD V+ N L+
Sbjct: 169 DALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLI 228

Query: 130 NCFC---------KMI----------------GVSDAFVALGRI----------LRKVFS 154
           +  C         +M+                 + DA V  GR+          +R+   
Sbjct: 229 SGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLD 288

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
           PD+VT   LI GLCM  +  EA  +F   V+  C     P+V+ Y+ +I+G CK   V  
Sbjct: 289 PDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGC----FPDVVTYSILINGYCKSKKVEH 344

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
              LF +M  RG+  +   Y  LI+ YC A       G  + A E+    V      GV 
Sbjct: 345 GMKLFCEMSQRGVVRNTVTYTILIQGYCRA-------GKLNVAEEIFRRMVF----CGV- 392

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
            HP++++Y  +++ LC +  ++KA  +  DM+  G+  D+V Y+ +I G C  G + DA 
Sbjct: 393 -HPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAW 451

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC 386
            ++ S+  +G +PD  +Y T++    K     EA +L+ +M   G+ P N C
Sbjct: 452 DIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGILP-NEC 502



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 111/236 (47%), Gaps = 31/236 (13%)

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           +D + +LF  M     +P +  +S L+     M + D    L+  ++  G   +  + N 
Sbjct: 62  LDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNI 121

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC----ILEAAELFRTLHNTK 401
           L+N + +  ++  ALS  G+MI +G  P         +  C    + +A  +F  +    
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMG 181

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
           ++ ++ ++N ++DGLCKS ++ +A +L  ++ + G  P+VVTY  +I GLC  G    A 
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDAT 241

Query: 462 DLLPDMEEK------------IRECLK------AIELLHKMAKRYVKPDEITVSIL 499
            ++  M ++            I  C+K      A E   +M +R + PD +T S+L
Sbjct: 242 RMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLL 297


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 145/486 (29%), Positives = 236/486 (48%), Gaps = 83/486 (17%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++DA+  FN M+ M+ TP +  FN +L + A  K+Y   + LS RL   G+ PD ++LNI
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+NCFC M  ++  F  L +IL++ + PD VTL  LI+GLC++G+  +A     K +A  
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 159

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
            + N +                               P+V+ Y +IID +CK   V++  
Sbjct: 160 FQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAY 219

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            LF +M  +GI  D   YN+LI  +C         G    A+ L  E V     L  I +
Sbjct: 220 GLFSEMAVKGISADVVTYNTLIYGFCIV-------GKLKEAIGLLNEMV-----LKTI-N 266

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+V +Y  ++++LCK+  V +AK +   M    + PDV+ YS+L+DGY L+  +  A+ +
Sbjct: 267 PNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHV 326

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
           F ++   G  PD  +Y  LIN + K + V+EAL+L+ EM                     
Sbjct: 327 FNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEM--------------------- 365

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
            H       +  ++ L+DGLCKS R+   W+L  ++   G   +V+TY+ +I GLC  G 
Sbjct: 366 -HQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGH 424

Query: 457 IEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           ++                 +AI L +KM  + ++P+  T +IL + L K     +   + 
Sbjct: 425 LD-----------------RAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVF 467

Query: 517 PSFLSR 522
              L++
Sbjct: 468 QDLLTK 473



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 110/361 (30%), Positives = 171/361 (47%), Gaps = 30/361 (8%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V  N +++  CK   VS+A+     +  K  S DVVT   LI G C+ GK  EA GL
Sbjct: 197 PDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGL 256

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             + V       + PNV  Y  ++D LCK+G V + + +   M    + PD   Y++L+ 
Sbjct: 257 LNEMVL----KTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMD 312

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            Y      + A           +   N    +GV   PDV +Y  +IN  CK+ +VD+A 
Sbjct: 313 GYFLVYEVKKA-----------QHVFNAMSLMGVT--PDVHTYTILINGFCKNKMVDEAL 359

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            LF +M  + ++P +V YSSLIDG C  GRI     L   +   G   D  +Y++LI+  
Sbjct: 360 NLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGL 419

Query: 360 SKIEKVEEALSLYGEMISMGVRP---------DNSC----ILEAAELFRTLHNTKFELDL 406
            K   ++ A++L+ +M    +RP         D  C    + +A E+F+ L    + L++
Sbjct: 420 CKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNV 479

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             +N +++G CK   L  A  +  K+   G  PN  T+  +I  L  +   +KA  LL  
Sbjct: 480 YTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQ 539

Query: 467 M 467
           M
Sbjct: 540 M 540



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 153/314 (48%), Gaps = 17/314 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L +A+   N M+     P + ++N L+ AL  +        +   +    + PD ++ +
Sbjct: 249 KLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYS 308

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            LM+ +  +  V  A      +     +PDV T   LI G C      EA  LF +    
Sbjct: 309 TLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEM--- 365

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             + N++P ++ Y+S+IDGLCK G ++ V  L  +M+ RG   D   Y+SLI   C    
Sbjct: 366 -HQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLC---- 420

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G+   A+ L  +  +          P++ ++  +++ LCK   +  A+E+F D+ 
Sbjct: 421 ---KNGHLDRAIALFNKMKDQE------IRPNIFTFTILLDGLCKGGRLKDAQEVFQDLL 471

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           ++G   +V  Y+ +I+G+C  G +++A  +   +E  GCIP+  ++ T+I +  K ++ +
Sbjct: 472 TKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDEND 531

Query: 367 EALSLYGEMISMGV 380
           +A  L  +MI+ G+
Sbjct: 532 KAEKLLRQMIARGL 545



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/404 (23%), Positives = 157/404 (38%), Gaps = 91/404 (22%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P  +  N +++ F KM   S A     R+  K   PD++TL  LI   C  G+ T    +
Sbjct: 57  PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSV 116

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             K +                                        RG  PD    N+LI+
Sbjct: 117 LAKILK---------------------------------------RGYPPDTVTLNTLIK 137

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C        KG    AL  H++ +    +L  +      SY ++IN +CK      A 
Sbjct: 138 GLCL-------KGQVKKALHFHDKLLAQGFQLNQV------SYATLINGVCKIGDTRAAI 184

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           +    +  R   PDVV+Y+++ID  C    + +A  LF  +  +G   D  +YNTLI  +
Sbjct: 185 KFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGF 244

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
             + K++EA+ L  EM+   + P                      ++  +N LVD LCK 
Sbjct: 245 CIVGKLKEAIGLLNEMVLKTINP----------------------NVYTYNILVDALCKE 282

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIE 479
            +++ A  +   + +   +P+V+TY+ ++ G  +                 + E  KA  
Sbjct: 283 GKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFL-----------------VYEVKKAQH 325

Query: 480 LLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
           + + M+   V PD  T +IL     K++   E +NL      +N
Sbjct: 326 VFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKN 369



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 111/235 (47%), Gaps = 19/235 (8%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           ++ +G+ PD  +  IL+N FCK   V +A      + +K   P +VT   LI GLC  G+
Sbjct: 330 MSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGR 389

Query: 173 FTEASGLFTKFVAFDCRPNVIP-NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
            +    L  +      R    P +VI Y+S+IDGLCK+G +++   LF  MK + I P+ 
Sbjct: 390 ISYVWDLIDEM-----RDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNI 444

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
           F +  L+   C     +DA+       E+ ++ +          H +V +Y  +IN  CK
Sbjct: 445 FTFTILLDGLCKGGRLKDAQ-------EVFQDLLTKG------YHLNVYTYNVMINGHCK 491

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
             L+++A  +   M+  G IP+   + ++I         D A KL   + + G +
Sbjct: 492 QGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGLL 546


>gi|302143409|emb|CBI21970.3| unnamed protein product [Vitis vinifera]
          Length = 375

 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 130/395 (32%), Positives = 213/395 (53%), Gaps = 42/395 (10%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           M+ M+P P +  F+ LL ++   K+Y   + L +++++ G+  +  +LNIL+N FC +  
Sbjct: 1   MLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNR 60

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           +  AF  LG IL+  + P   T   LIRGLC++GK  EA  LF K           P+V+
Sbjct: 61  LGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTG----EGFQPDVL 116

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            Y ++I+GLCKD  + +   LF DM  +GI P+ F Y+SLI   C   +W++A     A 
Sbjct: 117 TYGTLINGLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAM 176

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV---DKAKELFLDMKSRGIIPDV 314
             +H + +           PD L++ +++++LCK+ ++   DKA  LF +M  +G+IPD 
Sbjct: 177 --IHRKIM-----------PDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDT 223

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           V Y++LI G C +GR+ DA  LF  +   G IPD  +Y  L +   K  ++ EA+     
Sbjct: 224 VTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMV---- 279

Query: 375 MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
                             L + +  T  + D+ +++ ++DG+C++  L +A +LF KL  
Sbjct: 280 ------------------LLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSS 321

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
            G  P+V TYT+MI GLC +G + +A  L  +M+E
Sbjct: 322 KGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDE 356



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 162/344 (47%), Gaps = 43/344 (12%)

Query: 148 ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC-----RPNVIPNVICYASI 202
           +LR    P +V    L+  +     ++    L+ +  +F         N++ N  C+   
Sbjct: 1   MLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCH--- 57

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
              L + GF   V     D+   G  P    + +LIR  C        +G    AL+L +
Sbjct: 58  ---LNRLGFAFSV---LGDILKLGYQPSTATFTTLIRGLC-------VEGKIGEALQLFD 104

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
           + + G G       PDVL+Y ++IN LCKD  + +A  LF DM ++GI P+   YSSLI 
Sbjct: 105 K-MTGEG-----FQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIH 158

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK---IEKVEEALSLYGEMISMG 379
           G C++G   +A +LF ++     +PD  ++NTL+++  K   I+ +++A+ L+ EM   G
Sbjct: 159 GLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQG 218

Query: 380 VRPD----NSCI---------LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           + PD    N+ I          +A  LF  +       DL  +  L D LCK+ RL  A 
Sbjct: 219 LIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAM 278

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            L K +     +P++  Y++++ G+C  G +E A DL   +  K
Sbjct: 279 VLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSK 322



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 131/294 (44%), Gaps = 24/294 (8%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E ++ +AL  F+ M      P + ++ +L+  L   +     + L   +   G+ P+  +
Sbjct: 93  EGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGISPNNFT 152

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFT---EASGLFT 181
            + L++  C +    +A      ++ +   PD +T   L+  LC +G      +A GLF 
Sbjct: 153 YSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFE 212

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           +      +  +IP+ + Y ++I GLC  G +     LF +M   G  PD   Y  L    
Sbjct: 213 EM----SQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYL 268

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C      +A       L++ E         G    PD+  Y  +++ +C+   ++ A++L
Sbjct: 269 CKNHRLAEAM----VLLKVIE---------GTNLDPDIHIYSIVMDGMCRAGELEAARDL 315

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           F  + S+G+ PDV  Y+ +I+G C  G + +A KLF  ++      D  SY+T 
Sbjct: 316 FSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDEN----DIESYSTF 365



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 93/213 (43%), Gaps = 40/213 (18%)

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           P +V +S L+     M        L+  ++S G   +T + N LINS+  + ++  A S+
Sbjct: 8   PSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSV 67

Query: 372 YGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
            G+++ +G +P  +                       F  L+ GLC   ++  A +LF K
Sbjct: 68  LGDILKLGYQPSTA----------------------TFTTLIRGLCVEGKIGEALQLFDK 105

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK------------------IRE 473
           +   G +P+V+TY  +I GLC +  + +A  L  DM  K                  +  
Sbjct: 106 MTGEGFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGH 165

Query: 474 CLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
             +AI L + M  R + PD++T + L + L K+
Sbjct: 166 WKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKE 198



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 5/162 (3%)

Query: 62  KSGEVELND-ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           K G +++ D A+  F  M      P   ++N+L+  L       + I L   +   G +P
Sbjct: 197 KEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIP 256

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           D V+  IL +  CK   +++A V L  I      PD+     ++ G+C  G+   A  LF
Sbjct: 257 DLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLF 316

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           +K  +      + P+V  Y  +I+GLC+ G + +   LF +M
Sbjct: 317 SKLSS----KGLHPDVRTYTIMINGLCQQGLLAEASKLFGEM 354



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 76/184 (41%), Gaps = 39/184 (21%)

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406
           P    ++ L+ S ++++     LSLY +M S G+ P N+  L                  
Sbjct: 8   PSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGI-PHNTYTL------------------ 48

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
              N L++  C   RL  A+ +   + + G +P+  T+T +I GLC+EG I +A      
Sbjct: 49  ---NILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEA------ 99

Query: 467 MEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEE 526
                      ++L  KM     +PD +T   L   L KD    E ++L    L++    
Sbjct: 100 -----------LQLFDKMTGEGFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGISP 148

Query: 527 SKLT 530
           +  T
Sbjct: 149 NNFT 152


>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
 gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 152/498 (30%), Positives = 242/498 (48%), Gaps = 67/498 (13%)

Query: 36  PSSLHSN----SVSTVEEKTKLLK----YLSENSKSGEVELNDALCFFNYMIHMQPTPFM 87
           PS L SN    + ST  +K  L +    ++S NS   ++ ++DA+  F  MIHM P P  
Sbjct: 29  PSFLFSNHHHLNTSTCTKKPSLPQNNGGFVSNNSN--DIGIDDAMASFYRMIHMNPRPSF 86

Query: 88  PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGR 147
                 LG++A KK Y   + L  +++  G+  +  +LNIL+N  C++  +  A   L +
Sbjct: 87  VELGKFLGSIAKKKQYSTVVSLCNQMDLFGVAHNDYTLNILINSLCRLSHIHFAVSVLSK 146

Query: 148 ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207
           + +    PD VT   LI GLC +G+  EA  LF +    D     +PN + +  ++D LC
Sbjct: 147 MFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGRDA----MPNTVTFTILVDVLC 202

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
           K G V++ R +F  M  +G+ P+ + YN+L+  YC  +   DA    S   E+       
Sbjct: 203 KKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDA----SKVFEIM------ 252

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
              +G  C P V SY  +IN  CK   +D+AK L   M  + +IP+ V Y++L+ G C  
Sbjct: 253 ---VGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHA 309

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
             + +A++LF  + S G +P+  +Y+ L++   K   +EEAL                  
Sbjct: 310 SSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEAL------------------ 351

Query: 388 LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
               +L  ++   K E D+ ++N L+ G+  + +L  A ELF KL   G  P+V TY +M
Sbjct: 352 ----KLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIM 407

Query: 448 ICGLCIEGGIEKAYDLLPDMEEK------------IRECLK------AIELLHKMAKRYV 489
           I GL  EG  ++AY L   ME+             I+  L+      AI+L+ +M  R  
Sbjct: 408 IKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQLIDEMVGRRF 467

Query: 490 KPDEITVSILEELLNKDE 507
             D  T  +L +L + DE
Sbjct: 468 SADSSTFKMLLDLESHDE 485


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  225 bits (573), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 147/518 (28%), Positives = 238/518 (45%), Gaps = 127/518 (24%)

Query: 66  VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
           ++L+DA+  F  M+  +P P +  FN LL A+A  K +   I L ER+  + +  D  S 
Sbjct: 59  LKLDDAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSY 118

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC----------------- 168
           NIL+NCFC+   +  A   LG++++  + PD+VTL  L+ G C                 
Sbjct: 119 NILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVE 178

Query: 169 ------------------MQGKFTEASGLFTKFVAFDCRPNVI----------------- 193
                             +  K +EA  L  + V   C+P+++                 
Sbjct: 179 MGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDL 238

Query: 194 --------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
                          +V+ Y +IIDGLCK   ++    LF  M+ +GI PD F YNSLI 
Sbjct: 239 ALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLIS 298

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C    W DA    S  +E                +P+V+++ ++I++  K+  + +A+
Sbjct: 299 CLCNYGRWSDASRLLSNMIERK-------------INPNVVTFSALIDAFVKEGKLVEAE 345

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           +L+ +M  R I PD+  YSSLI+G+C+  R+D+A+ +F  + S+ C P+  +YNTLI  +
Sbjct: 346 KLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGF 405

Query: 360 SKIEKVEEALSLYGE-----------------------------------MISMGVRPD- 383
            K ++VEE + L+ E                                   M+S GV PD 
Sbjct: 406 CKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDI 465

Query: 384 --NSCILE----------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
              S +L+          A  +F  L  +K E D+  +N +++G+CK+ ++   W+LF  
Sbjct: 466 ITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCS 525

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           L   G +PNV+ YT MI G C +G  E+A  L  +M+E
Sbjct: 526 LSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKE 563



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 183/395 (46%), Gaps = 40/395 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            ++DA   FN M      P + ++NSL+  L     + +   L   +    + P+ V+ +
Sbjct: 270 HIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFS 329

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ F K   + +A      ++++   PD+ T   LI G CM  +  EA  +F   ++ 
Sbjct: 330 ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK 389

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           DC     PNV+ Y ++I G CK   V +   LF +M  RG+  +   YN+LI+    A  
Sbjct: 390 DC----FPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQA-- 443

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G+   A ++ ++ V+          PD+++Y  +++ LCK   ++KA  +F  ++
Sbjct: 444 -----GDCDMAQKIFKKMVSDG------VPPDIITYSILLDGLCKYGKLEKALVVFEYLQ 492

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
              + PD+  Y+ +I+G C  G+++D   LF S+  +G  P+   Y T+I+ + +    E
Sbjct: 493 KSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKE 552

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           EA +L+ EM   G  PD+ C                      +N L+    +     ++ 
Sbjct: 553 EADALFREMKEDGTLPDSGC----------------------YNTLIRARLRDGDKAASA 590

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
           EL K++   G   +  T + M+  +  +G +EK+Y
Sbjct: 591 ELIKEMRSCGFVGDASTIS-MVINMLHDGRLEKSY 624



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 98/222 (44%), Gaps = 39/222 (17%)

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           D+ SY  +IN  C+   +  A  +   M   G  PD+V  SSL++GYC   RI DA  L 
Sbjct: 114 DLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALV 173

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397
             +   G  PDT ++NTLI+      K  EA++L  +M+  G +PD              
Sbjct: 174 DQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPD-------------- 219

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                   L  +  +V+GLCK   +  A  L KK+ +   E +VV Y  +I GLC    I
Sbjct: 220 --------LVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHI 271

Query: 458 EKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           + A+                  L +KM  + ++PD  T + L
Sbjct: 272 DDAF-----------------ALFNKMETKGIRPDVFTYNSL 296


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  225 bits (573), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 143/487 (29%), Positives = 238/487 (48%), Gaps = 93/487 (19%)

Query: 57  LSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           LS N  S E++L+DA+  F  M+  +P P +  F+ LL A+A    +   I L E++  +
Sbjct: 52  LSRNGLS-ELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNL 110

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC-------- 168
           G+  +  + +IL+NCFC+   +  A   LG++++  + PD+VTL  L+ G C        
Sbjct: 111 GIPHNHYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEA 170

Query: 169 ---------------------------MQGKFTEASGLFTKFVAFDCRPNVI-------- 193
                                      +  K +EA  L  + VA  C+P++         
Sbjct: 171 VALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNG 230

Query: 194 -----------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
                                   NV+ Y +IIDGLCK   ++    LF  M+ +GI PD
Sbjct: 231 LCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPD 290

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
            F YNSLI   C    W DA    S  +E                +P+V+++ S+I++  
Sbjct: 291 VFTYNSLISCLCNYGRWSDASRLLSDMIERK-------------INPNVVTFNSLIDAFA 337

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K+  + +A++LF +M  R I P++V Y+SLI+G+C+  R+D+A+++F  + S+ C+PD  
Sbjct: 338 KEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVV 397

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCILE---------AAELFRTL 397
           +YNTLI  + K ++VEE + L+ EM   G+  +    N+ I           A ++F+ +
Sbjct: 398 TYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKM 457

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
            +     D+  ++ L+DGLCK  +L  A  +F+ L +   EPN+ TY +MI G+C  G +
Sbjct: 458 VSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKV 517

Query: 458 EKAYDLL 464
           E  +DL 
Sbjct: 518 EDGWDLF 524



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 186/395 (47%), Gaps = 40/395 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            ++DA   FN M      P + ++NSL+  L     + +   L   +    + P+ V+ N
Sbjct: 271 HMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFN 330

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ F K   + +A      ++++   P++VT   LI G CM  +  EA  +FT  V+ 
Sbjct: 331 SLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSK 390

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           DC    +P+V+ Y ++I G CK   V +   LF +M  RG+  +   YN+LI+    A  
Sbjct: 391 DC----LPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQA-- 444

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G+   A ++ ++ V+          PD+++Y  +++ LCK   ++KA  +F  ++
Sbjct: 445 -----GDCDMAQKIFKKMVSDG------VPPDIITYSILLDGLCKYGKLEKALVVFEYLQ 493

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
              + P++  Y+ +I+G C  G+++D   LF S+  +G  P+   Y T+I+ + +    E
Sbjct: 494 KSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKE 553

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           EA +L+ EM   G  PD+ C                      +N L+    +     ++ 
Sbjct: 554 EADALFREMKEDGTLPDSGC----------------------YNTLIRARLRDGDKAASA 591

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
           EL K++   G   +  T + M+  +  +G +EK+Y
Sbjct: 592 ELIKEMRSCGFVGDASTIS-MVINMLHDGRLEKSY 625



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 96/219 (43%), Gaps = 39/219 (17%)

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
           +Y  ++N  C+   +  A  +   M   G  PD+V  SSL++GYC   RI +A  L   +
Sbjct: 118 TYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM 177

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNT 400
              G  PDT ++NTLI+      K  EA++L   M++ G +PD                 
Sbjct: 178 VEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPD----------------- 220

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
                L  +  +V+GLCK   +  A  L KK+ +   E NVV Y  +I GLC    ++ A
Sbjct: 221 -----LFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDA 275

Query: 461 YDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           +DL   ME K                  +KPD  T + L
Sbjct: 276 FDLFNKMETK-----------------GIKPDVFTYNSL 297


>gi|298204849|emb|CBI34156.3| unnamed protein product [Vitis vinifera]
          Length = 442

 Score =  225 bits (573), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 141/426 (33%), Positives = 214/426 (50%), Gaps = 57/426 (13%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+DAL  FN ++HM P P +  F  LL ++A  K+Y   + LS ++++ G+ P+  +LNI
Sbjct: 26  LDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNI 85

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N FC +  V  AF  L +IL+    PD  T   LIRGLC++GK  EA  LF K +   
Sbjct: 86  LINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEG 145

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
            +PNV+                               P+V+ Y SIID LCKD  V +  
Sbjct: 146 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAF 205

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            LF  M G+GI PD F Y SL+   C    W+           L  + VN          
Sbjct: 206 NLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVT-------TLLNQMVNSK------IL 252

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PDV+ + +++++LCK+  V +A E+   M  RG+ PDVV Y++L+DG+CL   +D+A K+
Sbjct: 253 PDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKV 312

Query: 337 FVSIESEGCIPDTSSYNTLINSYSK----IEKVEEALSLYGEM---ISMG----VRPDNS 385
           F  +  +G  PD  SY TLIN+  K    +  ++E + L  E    +  G    +R D  
Sbjct: 313 FDMMVRKGFAPDVISYTTLINAGKKDGGGLVSLQEVIGLVKETPDAVKGGAVEVIRKDKM 372

Query: 386 CILEAAE-LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV-T 443
            + E    L   + N+K   ++ +F+ +VD LCK  ++  A ++   + + G EPN V  
Sbjct: 373 KLFEKGRTLLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNAVKV 432

Query: 444 YTVMIC 449
           +  M C
Sbjct: 433 FDTMKC 438



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 150/326 (46%), Gaps = 43/326 (13%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P+++ +A ++  + K    + V  L   M   G+ P+ +  N LI  +C       A   
Sbjct: 43  PSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSV 102

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
            +  L+L  +             PD  ++ ++I  LC +  + +A  LF  M   G  P+
Sbjct: 103 LAKILKLGHQ-------------PDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPN 149

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           VV Y +LI+G C +G    A +L  S+E   C PD   Y ++I+S  K  +V EA +L+ 
Sbjct: 150 VVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFS 209

Query: 374 EMISMGVRPD------------NSCILE-AAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           +M+  G+ PD            N C  +    L   + N+K   D+ +F+ +VD LCK  
Sbjct: 210 QMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEG 269

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIEL 480
           ++  A E+   + + G EP+VVTYT ++ G C++           +M+E       A+++
Sbjct: 270 KVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQS----------EMDE-------AVKV 312

Query: 481 LHKMAKRYVKPDEITVSILEELLNKD 506
              M ++   PD I+ + L     KD
Sbjct: 313 FDMMVRKGFAPDVISYTTLINAGKKD 338



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 117/251 (46%), Gaps = 22/251 (8%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++ +A   F+ M+    +P + ++ SL+ AL     + +   L  ++    +LPD V  +
Sbjct: 200 QVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFS 259

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            +++  CK   V++A   +  ++++   PDVVT   L+ G C+Q +  EA  +F   V  
Sbjct: 260 TVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMV-- 317

Query: 187 DCRPNVIPNVICYASIIDGLCKD--GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
             R    P+VI Y ++I+   KD  G V+   V+ L  +     PDA      ++     
Sbjct: 318 --RKGFAPDVISYTTLINAGKKDGGGLVSLQEVIGLVKE----TPDA------VKGGAVE 365

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
           V  +D          L  E VN          P+V+ + +++++LCK+  V +A ++   
Sbjct: 366 VIRKDKMKLFEKGRTLLNEMVNSK------IMPNVVIFSTVVDALCKEGKVMEAHDVVDM 419

Query: 305 MKSRGIIPDVV 315
           M  RG+ P+ V
Sbjct: 420 MIKRGVEPNAV 430


>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
          Length = 661

 Score =  225 bits (573), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 154/500 (30%), Positives = 242/500 (48%), Gaps = 71/500 (14%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLG----------ALAGKKYYVNFICLSERLNTI 116
           +L+ +L  F  +  +   P + +FN+LL           ALA   Y V    L +++  I
Sbjct: 156 KLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGSLFDQMVEI 215

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL P  ++ N L+N  C    V +A   + +++ K    DVVT G ++ G+C  G    A
Sbjct: 216 GLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSA 275

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L +K        ++ P+V+ Y++IID LCKDG  +  + LF +M  +GI P+ F YN 
Sbjct: 276 LNLLSKME----ETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNC 331

Query: 237 LIRVYCCAVNWEDAKGNTSAALE--LHEEFVNGNG------------ELGVICH------ 276
           +I  +C    W DA+      +E  ++ + +  N             E   +C       
Sbjct: 332 MIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRC 391

Query: 277 --PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
             PD ++Y S+I   CK    D AK +F  M S    PDVV ++++ID YC   R+D+  
Sbjct: 392 IFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEGM 447

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----------- 383
           +L   I   G + +T++YNTLI+ + +++ +  A  L+ EMIS GV PD           
Sbjct: 448 QLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGF 507

Query: 384 --NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
             N  + EA ELF  +  +K +LD   +N ++ G+CK  ++  AW+LF  LP +G EP+V
Sbjct: 508 CENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDV 567

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDMEEK------------IRECLKA------IELLHK 483
            TY VMI G C +  I  A  L   M++             IR CLKA      IEL+ +
Sbjct: 568 QTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISE 627

Query: 484 MAKRYVKPDEITVSILEELL 503
           M       D  T+ ++ +L+
Sbjct: 628 MRSNGFSGDAFTIKMVADLI 647



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 149/514 (28%), Positives = 234/514 (45%), Gaps = 58/514 (11%)

Query: 23  NSKKPISLN-SENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHM 81
           NS++ I    +E    SL S +  T E +   LK  S   KS    L+DA+ FF+YM+  
Sbjct: 45  NSRRLIHGRVAEKGTKSLPSLTQVTFEGEELKLKSGSHYFKS----LDDAIDFFDYMVRS 100

Query: 82  QPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDA 141
           +P       N ++G           I L  ++    +  +  S NIL+ CFC    +S +
Sbjct: 101 RPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFS 160

Query: 142 FVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA----FD--CRPNVIPN 195
               G++ +  F PDVVT   L+ GLC++ + +EA  LF   V     FD      + P 
Sbjct: 161 LSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGSLFDQMVEIGLTPV 220

Query: 196 VICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTS 255
           VI + ++I+GLC +G V +   L   M G+G++ D   Y +++   C         G+T 
Sbjct: 221 VITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMC-------KMGDTK 273

Query: 256 AALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV 315
           +AL L  +    +        PDV+ Y +II+ LCKD     A+ LF +M  +GI P+V 
Sbjct: 274 SALNLLSKMEETH------IKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVF 327

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
            Y+ +IDG+C  GR  DA++L   +      PD  ++N LI++  K  K+ EA  L  EM
Sbjct: 328 TYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEM 387

Query: 376 ISMGVRPD----NSCIL---------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRL 422
           +   + PD    NS I          +A  +F  + +     D+  FN ++D  C++ R+
Sbjct: 388 LHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASP----DVVTFNTIIDVYCRAKRV 443

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLH 482
               +L +++ R G   N  TY  +I G C    +  A D                 L  
Sbjct: 444 DEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQD-----------------LFQ 486

Query: 483 KMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           +M    V PD IT +IL     ++E   E + L 
Sbjct: 487 EMISHGVCPDTITCNILLYGFCENEKLEEALELF 520


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  224 bits (572), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 146/486 (30%), Positives = 237/486 (48%), Gaps = 83/486 (17%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++DA+  FN M+ M+ TP +  FN +L + A  K+Y   + LS RL   G+ PD ++LNI
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+NCFC M  ++  F  L +IL++ + PD VTL  LI+GLC++G+  +A     K +A  
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 159

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
            + N +                               PNV  Y++IID LCK   V++  
Sbjct: 160 FQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAY 219

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            LF +M  +GI  D   Y++LI  +C        +G    A+ L  E V     L  I +
Sbjct: 220 GLFSEMTVKGISADVVTYSTLIYGFCI-------EGKLKEAIGLLNEMV-----LKTI-N 266

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+V +Y  ++++LCK+  V +AK +   M    + PDV+ YS+L+DGY L+  +  A+ +
Sbjct: 267 PNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHV 326

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
           F ++   G  PD  +Y  LIN + K + V+EAL+L+ EM                     
Sbjct: 327 FNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEM--------------------- 365

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
            H       +  ++ L+DGLCKS R+   W+L  ++   G   +V+TY+ +I GLC  G 
Sbjct: 366 -HQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGH 424

Query: 457 IEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           ++                 +AI L +KM  + ++P+  T +IL + L K     +   + 
Sbjct: 425 LD-----------------RAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVF 467

Query: 517 PSFLSR 522
              L++
Sbjct: 468 QDLLTK 473



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 171/361 (47%), Gaps = 30/361 (8%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+    + +++  CK   VS+A+     +  K  S DVVT   LI G C++GK  EA GL
Sbjct: 197 PNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGL 256

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             + V       + PNV  Y  ++D LCK+G V + + +   M    + PD   Y++L+ 
Sbjct: 257 LNEMVL----KTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMD 312

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            Y      + A           +   N    +GV   PDV +Y  +IN  CK+ +VD+A 
Sbjct: 313 GYFLVYEVKKA-----------QHVFNAMSLMGVT--PDVHTYTILINGFCKNKMVDEAL 359

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            LF +M  + ++P +V YSSLIDG C  GRI     L   +   G   D  +Y++LI+  
Sbjct: 360 NLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGL 419

Query: 360 SKIEKVEEALSLYGEMISMGVRP---------DNSC----ILEAAELFRTLHNTKFELDL 406
            K   ++ A++L+ +M    +RP         D  C    + +A E+F+ L    + L++
Sbjct: 420 CKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNV 479

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             +N +++G CK   L  A  +  K+   G  PN  T+  +I  L  +   +KA  LL  
Sbjct: 480 YTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQ 539

Query: 467 M 467
           M
Sbjct: 540 M 540



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 144/293 (49%), Gaps = 33/293 (11%)

Query: 108 CLSERLN-TIGLL---------PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDV 157
           C+  +L   IGLL         P+  + NIL++  CK   V +A   L  +L+    PDV
Sbjct: 245 CIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDV 304

Query: 158 VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRV 217
           +T   L+ G  +  +  +A  +F           V P+V  Y  +I+G CK+  V++   
Sbjct: 305 ITYSTLMDGYFLVYEVKKAQHVFNAMSLM----GVTPDVHTYTILINGFCKNKMVDEALN 360

Query: 218 LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277
           LF +M  + + P    Y+SLI   C         G      +L +E +   G+       
Sbjct: 361 LFKEMHQKNMVPGIVTYSSLIDGLC-------KSGRIPYVWDLIDE-MRDRGQ-----PA 407

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           DV++Y S+I+ LCK+  +D+A  LF  MK + I P++  ++ L+DG C  GR+ DA+++F
Sbjct: 408 DVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVF 467

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEA 390
             + ++G   +  +YN +IN + K   +EEAL++  +M       DN CI  A
Sbjct: 468 QDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKM------EDNGCIPNA 514



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 153/316 (48%), Gaps = 17/316 (5%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E +L +A+   N M+     P + ++N L+ AL  +        +   +    + PD ++
Sbjct: 247 EGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVIT 306

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            + LM+ +  +  V  A      +     +PDV T   LI G C      EA  LF +  
Sbjct: 307 YSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEM- 365

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
               + N++P ++ Y+S+IDGLCK G +  V  L  +M+ RG   D   Y+SLI   C  
Sbjct: 366 ---HQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLC-- 420

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                  G+   A+ L  +  +          P++ ++  +++ LCK   +  A+E+F D
Sbjct: 421 -----KNGHLDRAIALFNKMKDQE------IRPNIFTFTILLDGLCKGGRLKDAQEVFQD 469

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           + ++G   +V  Y+ +I+G+C  G +++A  +   +E  GCIP+  ++ T+I +  K ++
Sbjct: 470 LLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDE 529

Query: 365 VEEALSLYGEMISMGV 380
            ++A  L  +MI+ G+
Sbjct: 530 NDKAEKLLRQMIARGL 545



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/404 (23%), Positives = 156/404 (38%), Gaps = 91/404 (22%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P  +  N +++ F KM   S A     R+  K   PD++TL  LI   C  G+ T    +
Sbjct: 57  PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSV 116

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             K +                                        RG  PD    N+LI+
Sbjct: 117 LAKILK---------------------------------------RGYPPDTVTLNTLIK 137

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C        KG    AL  H++ +    +L  +      SY ++IN +CK      A 
Sbjct: 138 GLCL-------KGQVKKALHFHDKLLAQGFQLNQV------SYATLINGVCKIGDTRGAI 184

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           +L   +  R   P+V +YS++ID  C    + +A  LF  +  +G   D  +Y+TLI  +
Sbjct: 185 KLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGF 244

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
               K++EA+ L  EM+   + P+                      +  +N LVD LCK 
Sbjct: 245 CIEGKLKEAIGLLNEMVLKTINPN----------------------VYTYNILVDALCKE 282

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIE 479
            +++ A  +   + +   +P+V+TY+ ++ G  +                 + E  KA  
Sbjct: 283 GKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFL-----------------VYEVKKAQH 325

Query: 480 LLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
           + + M+   V PD  T +IL     K++   E +NL      +N
Sbjct: 326 VFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKN 369



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 110/235 (46%), Gaps = 19/235 (8%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           ++ +G+ PD  +  IL+N FCK   V +A      + +K   P +VT   LI GLC  G+
Sbjct: 330 MSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGR 389

Query: 173 FTEASGLFTKFVAFDCRPNVIP-NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
                 L  +      R    P +VI Y+S+IDGLCK+G +++   LF  MK + I P+ 
Sbjct: 390 IPYVWDLIDEM-----RDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNI 444

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
           F +  L+   C     +DA+       E+ ++ +          H +V +Y  +IN  CK
Sbjct: 445 FTFTILLDGLCKGGRLKDAQ-------EVFQDLLTKG------YHLNVYTYNVMINGHCK 491

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
             L+++A  +   M+  G IP+   + ++I         D A KL   + + G +
Sbjct: 492 QGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGLL 546


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  224 bits (572), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 135/413 (32%), Positives = 215/413 (52%), Gaps = 49/413 (11%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +++DA+  FN ++   PTP    FN +LG+L   K+Y   + LS+++   G+ P+ V+ N
Sbjct: 42  DVDDAVSLFNRLLQQNPTPPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCN 101

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ----------GKFTEA 176
           IL+N FC++  +  AF  L +IL+  + P+ +TL  LI+GLC+           GK  +A
Sbjct: 102 ILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDA 161

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             LF K +      N+ P+V  +  ++DG CK+G V + + +   M  +GI P    YNS
Sbjct: 162 VDLFNKMIL----ENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNS 217

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           L+  Y        AK              N   +LGV   PD+ SY  +IN  CK  ++D
Sbjct: 218 LMDGYFLVKQVNKAK-----------SIFNTMAQLGV--SPDIQSYSILINGFCKIKMMD 264

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A EL  +M  + IIP+VV YSSLIDG C  G+I  A KL   +   G  P+  +Y++++
Sbjct: 265 EAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSIL 324

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           ++  K  +V+ A++L  +M + G++P                      ++  +  L+ GL
Sbjct: 325 DALCKNHQVDNAIALLTQMKNQGIQP----------------------NMYTYTILIKGL 362

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           C+S +L  A ++F+ L   G   NV TYTVMI G C +G  ++A  LL  ME+
Sbjct: 363 CQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMED 415



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 120/296 (40%), Gaps = 41/296 (13%)

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
           H + + Y S   +   +  VD A  LF  +  +   P  + ++ ++              
Sbjct: 24  HFNFIPYFSTSTTFHNNNDVDDAVSLFNRLLQQNPTPPNIEFNKILGSLVKSKHYHTVLY 83

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP------------- 382
           L   +E  G  P+  + N LINS+ ++  +  A S+  +++ MG +P             
Sbjct: 84  LSQKMEFRGIKPNLVNCNILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLC 143

Query: 383 ------DNSCIL----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
                 D  CI+    +A +LF  +       D+  F  LVDG CK  R++ A  +   +
Sbjct: 144 LNGKIHDKHCIVGKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMM 203

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL---------PDMEE---------KIREC 474
              G +P VVTY  ++ G  +   + KA  +          PD++          KI+  
Sbjct: 204 MIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMM 263

Query: 475 LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
            +A+ELL +M  + + P+ +T S L + L K       + L+     R Q  + +T
Sbjct: 264 DEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVT 319


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score =  224 bits (572), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 146/477 (30%), Positives = 231/477 (48%), Gaps = 77/477 (16%)

Query: 66  VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
           ++ N+AL  F +M+  +P P +  F  LL  +A  K +   I L + L  +G+  D  + 
Sbjct: 51  LQFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTC 110

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           N+LMNCFC+      A   LG++++  F PD+VT   LI G C+  +  EA  +  + V 
Sbjct: 111 NLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVE 170

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
              +P+V+     Y +IID LCK+G VN    LF  M+  GI PD  +Y SL+   C + 
Sbjct: 171 MGIKPDVV----MYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSG 226

Query: 246 NWEDA----KGNTSAALE--------LHEEFVNG----------NGELGVICHPDVLSYC 283
            W DA    +G T   ++        L + FV            N  + +   P++ +Y 
Sbjct: 227 RWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYT 286

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
           S+IN  C +  VD+A+++F  M+++G  PDVV Y+SLI+G+C   ++DDA K+F  +  +
Sbjct: 287 SLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQK 346

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEA 390
           G   +T +Y TLI  + ++ K   A  ++  M+S GV P+             N  + +A
Sbjct: 347 GLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKA 406

Query: 391 AELFRTL-----------------------HNTKFELDLTVFNCL--------------- 412
             +F  +                       +N K E  L VF  +               
Sbjct: 407 LMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTII 466

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           + G+CK+ ++++A  LF  LP  G +PNVVTYT MI GL  EG   +A+ L   M+E
Sbjct: 467 IQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKE 523



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 168/376 (44%), Gaps = 68/376 (18%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNF-ICLSERLNTIGLLPDFVSL 125
            + +A+   N M+ M   P +  + +++ +L  K  +VN+ + L +++   G+ PD V  
Sbjct: 157 RMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLC-KNGHVNYALSLFDQMENYGIRPDVVMY 215

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
             L+N  C      DA   L  + ++   PDV+T   LI     +GKF +A  L+ + + 
Sbjct: 216 TSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMI- 274

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
              R ++ PN+  Y S+I+G C +G V++ R +F  M+ +G +PD   Y SLI  +C   
Sbjct: 275 ---RMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCK 331

Query: 246 NWEDA---------KGNTSAALELHEEFVNGNGELG-------VICH-------PDVLSY 282
             +DA         KG T   +  +   + G G++G       V  H       P++ +Y
Sbjct: 332 KVDDAMKIFYEMSQKGLTGNTIT-YTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTY 390

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSR---GIIPDVVVYSSL------------------- 320
             +++ LC +  V KA  +F DM+ R   G+ P++  Y+ L                   
Sbjct: 391 NVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFED 450

Query: 321 ----------------IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
                           I G C  G++ +A  LF S+ S+G  P+  +Y T+I+   +   
Sbjct: 451 MRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGL 510

Query: 365 VEEALSLYGEMISMGV 380
             EA  L+ +M   GV
Sbjct: 511 KHEAHVLFRKMKEDGV 526



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 107/239 (44%), Gaps = 30/239 (12%)

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
           +Y  I+ +    +  ++A +LF  M     +P ++ ++ L++    M + D    L   +
Sbjct: 39  NYREILRNGLHSLQFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHL 98

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---------NSCILEAA 391
           +  G   D  + N L+N + +  +   A S  G+M+ +G  PD           C+    
Sbjct: 99  QIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRM 158

Query: 392 ELFRTLHNTKFEL----DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
           E   ++ N   E+    D+ ++  ++D LCK+  +  A  LF ++  YG  P+VV YT +
Sbjct: 159 EEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSL 218

Query: 448 ICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
           + GLC  G              + R+   A  LL  M KR +KPD IT + L +   K+
Sbjct: 219 VNGLCNSG--------------RWRD---ADSLLRGMTKRKIKPDVITFNALIDAFVKE 260


>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 526

 Score =  224 bits (572), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 131/421 (31%), Positives = 226/421 (53%), Gaps = 33/421 (7%)

Query: 66  VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
           ++ N+AL  F++M+  +P P +  F  LL  +A  K +   I L + L  +G+  D  + 
Sbjct: 50  LQFNEALDLFSHMVESRPLPSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTC 109

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           N+LMNCFC+      A   LG++++  F PD+ T   LI G C+  +  EA  +  + V 
Sbjct: 110 NLLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVE 169

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
              +P+V+     Y +IID LCK+G V+    LF  M+  GI PD  +Y SL+   C + 
Sbjct: 170 MGIKPDVV----IYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSG 225

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
            W DA       L L        G +     PDV+++ ++I++  K+  +  AKEL+ +M
Sbjct: 226 RWRDAD------LLLR-------GMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEM 272

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
               I P++  Y+SLI+G C+ GR+D+AR++F  +E++GC PD  +Y +LIN + K +KV
Sbjct: 273 IQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKV 332

Query: 366 EEALSLYGEMISMGVRPDN---SCILE----------AAELFRTLHNTKFELDLTVFNCL 412
           E+A+ ++ EM   G+  +    + +++          A E+F  + +     ++  +N L
Sbjct: 333 EDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVL 392

Query: 413 VDGLCKSWRLRSAWELFKKLPRY---GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           +  LC + ++  A  +F+ + +    G  PN+ TY V++ GLC  G +EKA  +  DM++
Sbjct: 393 LHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEKALMVFGDMQK 452

Query: 470 K 470
           +
Sbjct: 453 R 453



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 168/375 (44%), Gaps = 66/375 (17%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            + +A+   N M+ M   P +  + +++ +L    +  N + L  ++   G+ PD V   
Sbjct: 156 RIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYT 215

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+N  C      DA + L  ++++   PDV+T   LI     +GK  +A  L+ + +  
Sbjct: 216 SLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQM 275

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
               ++ PN+  Y S+I+GLC +G +++ R +F  M+ +G +PD   Y SLI  +C    
Sbjct: 276 ----SIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKK 331

Query: 247 WEDA---------KGNTSAALELHEEFVNGNGELG-------VICH-------PDVLSYC 283
            EDA         KG T   +  +   + G G +G       V  H       P++ +Y 
Sbjct: 332 VEDAMKIFYEMSQKGLTGNTIT-YTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYN 390

Query: 284 SIINSLCKDVLVDKAKELFLDMKSR---GIIPDVVVYSSLIDGYC--------LM----- 327
            +++ LC +  V+KA  +F DM+ R   G+ P++  Y+ L+ G C        LM     
Sbjct: 391 VLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEKALMVFGDM 450

Query: 328 ----------------------GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
                                 G++ DA  LF S+ S+G  P+  +Y T+I+   +   +
Sbjct: 451 QKRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLPSKGVKPNVVTYTTMISGLFREGLM 510

Query: 366 EEALSLYGEMISMGV 380
            EA  L+ +M   GV
Sbjct: 511 LEAHVLFRKMKEDGV 525



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 116/271 (42%), Gaps = 39/271 (14%)

Query: 258 LELHEEFVNGNGE--------LGVICHPDVL-SYCSIINSLCKDVLVDKAKELFLDMKSR 308
           L LH + V GN          LG+        +Y  I+ +    +  ++A +LF  M   
Sbjct: 6   LHLHRDLVKGNSGKALSFSRLLGLSFWVRAFCNYREILRNGLHSLQFNEALDLFSHMVES 65

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
             +P ++ ++ L++    M + D    L   ++  G   D  + N L+N + +  +   A
Sbjct: 66  RPLPSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLLMNCFCQSSQPCLA 125

Query: 369 LSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDG 415
            S  G+++ +G  PD              + I EA  +   +     + D+ ++  ++D 
Sbjct: 126 SSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDS 185

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL 475
           LCK+  + +A  LF ++  YG  P+VV YT ++ GLC  G    A DL            
Sbjct: 186 LCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDA-DL------------ 232

Query: 476 KAIELLHKMAKRYVKPDEITVSILEELLNKD 506
               LL  M KR +KPD IT + L +   K+
Sbjct: 233 ----LLRGMMKRKIKPDVITFNALIDAFVKE 259


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score =  224 bits (571), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 138/455 (30%), Positives = 224/455 (49%), Gaps = 62/455 (13%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           ++K   + L + +  F  MI  +P P +  F+ +L  +A  K Y   I L   +   G+ 
Sbjct: 42  STKRSSMNLEEEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIG 101

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
            D  S NI++NC C+      A   +G++++  + PDVVT+  LI G C   +  +A  L
Sbjct: 102 HDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDL 161

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
            +K      RP+V+     Y +IIDG CK G VN    LF  M+  G+  DA  YNSL+ 
Sbjct: 162 VSKMEEMGFRPDVV----IYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVA 217

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             CC+  W DA         L  + V  +        P+V+++ ++I+   K+    +A 
Sbjct: 218 GLCCSGRWSDAA-------RLMRDMVMRD------IVPNVITFTAVIDVFVKEGKFSEAM 264

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           +L+ +M  R + PDV  Y+SLI+G C+ GR+D+A+++   + ++GC+PD  +YNTLIN +
Sbjct: 265 KLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGF 324

Query: 360 SKIEKVEEALSLYGEMISMGV------------------RPD------------------ 383
            K ++V+E   L+ EM   G+                  RPD                  
Sbjct: 325 CKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTY 384

Query: 384 ---------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
                    N  + +A  LF  +  ++ ELD+T +N ++ G+CK   +  AW+LF+ L  
Sbjct: 385 SILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSC 444

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
            G +P+VV+YT MI G C +   +K+  L   M+E
Sbjct: 445 KGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQE 479



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 152/315 (48%), Gaps = 20/315 (6%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +NDA+  F+ M          ++NSL+  L     + +   L   +    ++P+ ++   
Sbjct: 190 VNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTA 249

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           +++ F K    S+A      + R+   PDV T   LI GLCM G+  EA  +    V   
Sbjct: 250 VIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKG 309

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C    +P+V+ Y ++I+G CK   V++   LF +M  RG+  D   YN++I+ Y  A   
Sbjct: 310 C----LPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQA--- 362

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               G   AA E+     +          P++ +Y  ++  LC +  V+KA  LF +M+ 
Sbjct: 363 ----GRPDAAQEIFSRMDS---------RPNIRTYSILLYGLCMNWRVEKALVLFENMQK 409

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
             I  D+  Y+ +I G C +G ++DA  LF S+  +G  PD  SY T+I+ + +  + ++
Sbjct: 410 SEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDK 469

Query: 368 ALSLYGEMISMGVRP 382
           +  LY +M   G+ P
Sbjct: 470 SDLLYRKMQEDGLLP 484


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 145/500 (29%), Positives = 239/500 (47%), Gaps = 66/500 (13%)

Query: 66  VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
           +   DA   F  M+H QP P +  F  LL A A  + Y   I  S+++   G+  D  S 
Sbjct: 50  IRFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSF 109

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
            IL++CFC+   +S A   LG++++  + P +VT G L+ G C+  +  +A  L    V 
Sbjct: 110 TILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMV- 168

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
              +    PNV+ Y ++IDGLCK+G +N    L  +M+ +G+  D   YN+L+   C + 
Sbjct: 169 ---KSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSG 225

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
            W DA        ++ +  +N          PDV+++ ++I+   K   +D+A+EL+ +M
Sbjct: 226 RWSDA---ARMLRDMMKRSIN----------PDVVTFTALIDVFVKQGNLDEAQELYKEM 272

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
               + P+ V Y+S+I+G C+ GR+ DA+K F  + S+GC P+  +YNTLI+ + K   V
Sbjct: 273 IQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMV 332

Query: 366 EEALSLYGE-----------------------------------MISMGVRPD--NSCIL 388
           +E + L+                                     M+S  V PD    CIL
Sbjct: 333 DEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCIL 392

Query: 389 -----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
                       A   F  +  ++  + +  +N ++ GLCK+ ++  AWELF +LP  G 
Sbjct: 393 LHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGV 452

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVS 497
           +P+  TYT+MI GLC  G   +A +L+  M+E+   C    E  H + +      EI++S
Sbjct: 453 KPDARTYTIMILGLCKNGPRREADELIRRMKEEGIICQMNAEDDH-LEEHSSSNKEISLS 511

Query: 498 ILEELLNKDENCHECMNLLP 517
           + E       N      L+P
Sbjct: 512 LREIWERSKSNPFWMQRLIP 531



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 133/482 (27%), Positives = 238/482 (49%), Gaps = 34/482 (7%)

Query: 4   SSPATSRTAFKVKPSSSLRN--SKKPISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENS 61
           S+P   +    +  SSS++    +  + L   N P +  S S S         + L    
Sbjct: 521 SNPFWMQRLIPIAFSSSVKGFVRRHYLLLERGNNPETSLSRSFSGASHHHHYRERLRNEL 580

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
               ++ +DA   F  M+  +P P +  F  +L  +A    +   I L  ++  +G+  D
Sbjct: 581 HC--IKFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHD 638

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             S  IL++CFC+   +S A   LG++++  F P +VTLG L+ G C   +F EA  L  
Sbjct: 639 LYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVD 698

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
               F      +PNV+ Y ++I+GLCK+  +N    +F  M+ +GI  DA  YN+LI   
Sbjct: 699 SMDGF----GFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGL 754

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
             +  W DA         L  + V    +      P+V+ + ++I++  K+  + +A+ L
Sbjct: 755 SNSGRWTDAA-------RLLRDMVKRKID------PNVIFFTALIDTFVKEGNLLEARNL 801

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           + +M  R ++P+V  Y+SLI+G+C+ G + DA+ +F  + S+GC PD  +YNTLI  + K
Sbjct: 802 YKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCK 861

Query: 362 IEKVEEALSLYGEMISMGVRPD----NSCILE---------AAELFRTLHNTKFELDLTV 408
            ++VE+ + L+ EM   G+  D    N+ I           A ++F  + +     D+  
Sbjct: 862 SKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVT 921

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +N L+D LC + ++  A  + + L +   + +++TY ++I GLC    +++A+ L   + 
Sbjct: 922 YNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLT 981

Query: 469 EK 470
            K
Sbjct: 982 RK 983



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 153/341 (44%), Gaps = 26/341 (7%)

Query: 67   ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            +LN+AL  F  M          ++N+L+  L+    + +   L   +    + P+ +   
Sbjct: 724  DLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFT 783

Query: 127  ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
             L++ F K   + +A      ++R+   P+V T   LI G C+ G   +A  +F   V+ 
Sbjct: 784  ALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSK 843

Query: 187  DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             C     P+V+ Y ++I G CK   V     LF +M  +G+  DAF YN+LI  YC A  
Sbjct: 844  GC----FPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQA-- 897

Query: 247  WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                       L + ++  N   + GV   PD+++Y  +++ LC +  ++KA  +  D++
Sbjct: 898  ---------GKLNVAQKVFNRMVDCGV--SPDIVTYNILLDCLCNNGKIEKALVMVEDLQ 946

Query: 307  SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
               +  D++ Y+ +I G C   ++ +A  LF S+  +G  PD  +Y T+I+   +     
Sbjct: 947  KSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQR 1006

Query: 367  EALSLYGEMISMGVRPDNSCILE---------AAELFRTLH 398
            EA  L   M   G  P      E         +AEL +  H
Sbjct: 1007 EADKLCRRMKEDGFMPSERIYDETLRDHYTSLSAELIKAAH 1047



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 106/241 (43%), Gaps = 30/241 (12%)

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           D A  LF +M     IP +V ++ ++     M + D    L+  +E+ G   D  S+  L
Sbjct: 586 DDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTIL 645

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRP-------------DNSCILEAAELFRTLHNTKF 402
           I+ + +  ++  AL+L G+M+ +G RP               +   EA  L  ++    F
Sbjct: 646 IHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGF 705

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
             ++ ++N +++GLCK+  L +A E+F  + + G   + VTY  +I GL   G    A  
Sbjct: 706 VPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAAR 765

Query: 463 LLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
           LL D                 M KR + P+ I  + L +   K+ N  E  NL    + R
Sbjct: 766 LLRD-----------------MVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRR 808

Query: 523 N 523
           +
Sbjct: 809 S 809


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 161/569 (28%), Positives = 258/569 (45%), Gaps = 94/569 (16%)

Query: 3   SSSPATSRTAFKVKPSSSLRNSKKPISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSK 62
           SSS    R+ F+V    S+     P           +HS S ST                
Sbjct: 4   SSSSMLLRSVFRV----SVPKKFHPFQFPENTHFYFIHSFSTSTTFHNNN---------- 49

Query: 63  SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF 122
               ++ DA+  FN ++   PTP    F  +LG+L   K+Y   + L +++   G+ P+F
Sbjct: 50  ----DVVDAVSLFNCLLRQNPTPPDMEFGQILGSLVKSKHYHTVLSLFQKMEYRGIKPNF 105

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           V+ NIL+NCFC++  +  AF  L +IL+  + PD +TL   I+G C++G+  +A     K
Sbjct: 106 VNFNILINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDK 165

Query: 183 FVAFDCRPNVIP-------------------------------NVICYASIIDGLCKDGF 211
            VA     + +                                +V+ Y++IID +CKD  
Sbjct: 166 LVALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKN 225

Query: 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGEL 271
           VN    L+ +M  R I  +   Y++LI  +C     +DA G       L  +  + N   
Sbjct: 226 VNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIG-------LFNKMTSEN--- 275

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
               +PDV ++  ++++ CK+  V +AK     M  +GI PD+V Y+SL+DGYCL+  ++
Sbjct: 276 ---INPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVN 332

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP--------- 382
            A+ +  ++   G      SYN +IN + KI+ V++A+ L+ EM    + P         
Sbjct: 333 MAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLI 392

Query: 383 DNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
           D  C    I  A EL   +H+   + D+  ++ ++D LCK+  +  A  L  KL   G  
Sbjct: 393 DGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIR 452

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL------------------KAIEL 480
           PN+ TYT++I GLC  G +E A ++  D+  K                       +A+ L
Sbjct: 453 PNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSL 512

Query: 481 LHKMAKRYVKPDEITVSILE-ELLNKDEN 508
           L KM      PD IT  I+   L +KDEN
Sbjct: 513 LSKMKDNSCIPDAITYEIIICSLFDKDEN 541



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 115/414 (27%), Positives = 194/414 (46%), Gaps = 30/414 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +++ AL F + ++ +       S+ +L+  L         + L  R++   +  D V  +
Sbjct: 155 QIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYS 214

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            +++  CK   V+DAF     ++ +  S ++VT   LI G C+ GK  +A GLF K  + 
Sbjct: 215 TIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTS- 273

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
               N+ P+V  +  ++D  CK+G V + +     M  +GI PD   YNSL+  YC    
Sbjct: 274 ---ENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNE 330

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
              AK             +N     GV     V SY  +IN  CK  +VD+A +LF +M 
Sbjct: 331 VNMAK-----------SILNTMSHRGVT--ATVRSYNIVINGFCKIKMVDQAMKLFKEMH 377

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            + I P+V+ Y+SLIDG C  GRI  A +L   +   G  PD  +Y++++++  K   V+
Sbjct: 378 HKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVD 437

Query: 367 EALSLYGEMISMGVRP---------DNSC----ILEAAELFRTLHNTKFELDLTVFNCLV 413
           +A++L  ++   G+RP         D  C    + +A  +F  L    + L +  +  ++
Sbjct: 438 KAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMI 497

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            G C       A  L  K+      P+ +TY ++IC L  +   +KA  LL +M
Sbjct: 498 QGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIIICSLFDKDENDKAEKLLREM 551



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 121/463 (26%), Positives = 204/463 (44%), Gaps = 83/463 (17%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +NDA   ++ M+  + +  + ++++L+          + I L  ++ +  + PD  + NI
Sbjct: 226 VNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNI 285

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++ FCK   V +A   L  ++++   PD+VT   L+ G C+  +   A  +        
Sbjct: 286 LVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTM---- 341

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               V   V  Y  +I+G CK   V++   LF +M  + I+P+   YNSLI   C     
Sbjct: 342 SHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLC----- 396

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               G  S ALEL  + ++  G+      PD+++Y SI+++LCK+ LVDKA  L + +K 
Sbjct: 397 --KSGRISYALEL-IDLMHDRGQ-----QPDIITYSSILDALCKNHLVDKAIALLIKLKD 448

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG----------------------- 344
           +GI P++  Y+ LIDG C  GR++DAR +F  +  +G                       
Sbjct: 449 QGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDE 508

Query: 345 ------------CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------- 383
                       CIPD  +Y  +I S    ++ ++A  L  EMI+ G+            
Sbjct: 509 ALSLLSKMKDNSCIPDAITYEIIICSLFDKDENDKAEKLLREMITRGLLYSFLEYGSWSL 568

Query: 384 ----------NSCILEAAELFRTLHNTKFELDLTVFNCLV--------DGLCKSWRLRSA 425
                     N+  L+      + +  K  L+    +C++        D  C S  + S 
Sbjct: 569 SFMAAPAHFLNNDSLQCTSSQESGNWAKLLLERIYCDCVLTKSNMRDKDVECPSVIIYST 628

Query: 426 WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
            +  K+    G   +V TYTVMI G C  G  +++  LL  ME
Sbjct: 629 CDWSKQ----GYILDVNTYTVMIQGFCSHGLFDESLALLSKME 667



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 115/259 (44%), Gaps = 30/259 (11%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P  + +  I+ SL K         LF  M+ RGI P+ V ++ LI+ +C +G I  A  +
Sbjct: 68  PPDMEFGQILGSLVKSKHYHTVLSLFQKMEYRGIKPNFVNFNILINCFCQLGLIPFAFSV 127

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC---------- 386
              I   G  PDT + NT I  +    ++ +AL+ + +++++G   D             
Sbjct: 128 LAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCK 187

Query: 387 ---ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                 A EL R +     +LD+ +++ ++D +CK   +  A++L+ ++       N+VT
Sbjct: 188 VGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVT 247

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELL 503
           Y+ +I G CI G ++ A                 I L +KM    + PD  T +IL +  
Sbjct: 248 YSALISGFCIVGKLKDA-----------------IGLFNKMTSENINPDVYTFNILVDAF 290

Query: 504 NKDENCHECMNLLPSFLSR 522
            K+    E  N L   + +
Sbjct: 291 CKEGRVKEAKNGLAMMMKQ 309



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 131/328 (39%), Gaps = 56/328 (17%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIGLLPDFVSL 125
           ++ A+  F  M H Q  P + ++NSL+  L  +G+  Y   + L + ++  G  PD ++ 
Sbjct: 366 VDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYA--LELIDLMHDRGQQPDIITY 423

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV- 184
           + +++  CK   V  A   L ++  +   P++ T   LI GLC  G+  +A  +F   + 
Sbjct: 424 SSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLV 483

Query: 185 -AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
             ++   N       Y  +I G C  G  ++   L   MK     PDA  Y  +I    C
Sbjct: 484 KGYNLTVNT------YTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIII----C 533

Query: 244 AVNWEDAKGNTSAALE-------LHEEFVNGNGELGVICHP------DVLS--------- 281
           ++  +D        L        L+     G+  L  +  P      D L          
Sbjct: 534 SLFDKDENDKAEKLLREMITRGLLYSFLEYGSWSLSFMAAPAHFLNNDSLQCTSSQESGN 593

Query: 282 ---------YCSIINSLCKDVLVDKAKEL-------FLDMKSRGIIPDVVVYSSLIDGYC 325
                    YC  +  L K  + DK  E          D   +G I DV  Y+ +I G+C
Sbjct: 594 WAKLLLERIYCDCV--LTKSNMRDKDVECPSVIIYSTCDWSKQGYILDVNTYTVMIQGFC 651

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYN 353
             G  D++  L   +E  GCIPD  +Y+
Sbjct: 652 SHGLFDESLALLSKMEVNGCIPDAVTYD 679


>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
 gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g64583, mitochondrial; Flags: Precursor
 gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
          Length = 512

 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 135/453 (29%), Positives = 223/453 (49%), Gaps = 65/453 (14%)

Query: 66  VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
           +   DA   F  M+H QP P +  F  LL A A  + Y   I  S+++   G+  D  S 
Sbjct: 50  IRFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSF 109

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
            IL++CFC+   +S A   LG++++  + P +VT G L+ G C+  +  +A  L    V 
Sbjct: 110 TILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMV- 168

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
              +    PNV+ Y ++IDGLCK+G +N    L  +M+ +G+  D   YN+L+   C + 
Sbjct: 169 ---KSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSG 225

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
            W DA        ++ +  +N          PDV+++ ++I+   K   +D+A+EL+ +M
Sbjct: 226 RWSDA---ARMLRDMMKRSIN----------PDVVTFTALIDVFVKQGNLDEAQELYKEM 272

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
               + P+ V Y+S+I+G C+ GR+ DA+K F  + S+GC P+  +YNTLI+ + K   V
Sbjct: 273 IQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMV 332

Query: 366 EEALSLYGE-----------------------------------MISMGVRPD--NSCIL 388
           +E + L+                                     M+S  V PD    CIL
Sbjct: 333 DEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCIL 392

Query: 389 -----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
                       A   F  +  ++  + +  +N ++ GLCK+ ++  AWELF +LP  G 
Sbjct: 393 LHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGV 452

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           +P+  TYT+MI GLC  G   +A +L+  M+E+
Sbjct: 453 KPDARTYTIMILGLCKNGPRREADELIRRMKEE 485



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 137/314 (43%), Gaps = 17/314 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ELN AL   N M        + ++N+LL  L     + +   +   +    + PD V+  
Sbjct: 191 ELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFT 250

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ F K   + +A      +++    P+ VT   +I GLCM G+  +A   F    + 
Sbjct: 251 ALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASK 310

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C     PNV+ Y ++I G CK   V++   LF  M   G   D F YN+LI  YC    
Sbjct: 311 GC----FPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYC---- 362

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G    AL++    V+          PD++++C +++ LC +  ++ A   F DM+
Sbjct: 363 ---QVGKLRVALDIFCWMVSRR------VTPDIITHCILLHGLCVNGEIESALVKFDDMR 413

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
                  +V Y+ +I G C   +++ A +LF  +  EG  PD  +Y  +I    K     
Sbjct: 414 ESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRR 473

Query: 367 EALSLYGEMISMGV 380
           EA  L   M   G+
Sbjct: 474 EADELIRRMKEEGI 487


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 165/577 (28%), Positives = 257/577 (44%), Gaps = 141/577 (24%)

Query: 41  SNSVSTVEEKTKLLKYLS---------ENSKSG--EVELNDALCFFNYMIHMQPTPFMPS 89
           SN    +E+ T LL Y S         E  ++G  ++++NDA+  F  MI  +P P    
Sbjct: 42  SNFTQILEKGTSLLHYSSITEAKLSYKERLRNGIVDIKVNDAIDLFESMIQSRPLPTPID 101

Query: 90  FNSLLGALAGKKYY-------------------------VNFICLSERL----------N 114
           FN L  A+A  K Y                         +N  C  ++L           
Sbjct: 102 FNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAW 161

Query: 115 TIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFT 174
            +G  PD ++ + L+N FC    VS+A   + R++     PD+VT+  LI GLC++G+ +
Sbjct: 162 KLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVS 221

Query: 175 EASGLFTKFVAFDCRP-------------------------------NVIPNVICYASII 203
           EA  L  + V +  +P                               N+  +V+ Y+ +I
Sbjct: 222 EALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVI 281

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA------------- 250
           D LCKDG  +    LF +M+ +GI  D   Y+SLI   C    W+D              
Sbjct: 282 DSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNII 341

Query: 251 ---------------KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
                          +G    A EL+ E +           PD ++Y S+I+  CK+  +
Sbjct: 342 PDVVTFSALIDVFVKEGKLLEAKELYNEMITRG------IAPDTITYNSLIDGFCKENCL 395

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
            +A ++F  M S+G  PD+V YS LI+ YC   R+DD  +LF  I S+G IP+T +YNTL
Sbjct: 396 HEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTL 455

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRP-------------DNSCILEAAELFRTLHNTKF 402
           +  + +  K+  A  L+ EM+S GV P             DN  + +A E+F  +  ++ 
Sbjct: 456 VLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRM 515

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
            L + ++N ++ G+C + ++  AW LF  L   G +P+VVTY VMI GLC +G + +A  
Sbjct: 516 TLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEA-- 573

Query: 463 LLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
              DM            L  KM +    PD+ T +IL
Sbjct: 574 ---DM------------LFRKMKEDGCTPDDFTYNIL 595



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 159/370 (42%), Gaps = 44/370 (11%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
            +DAL  FN M        + +++SL+G L     + +   +   +    ++PD V+ + 
Sbjct: 290 FDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSA 349

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++ F K   + +A      ++ +  +PD +T   LI G C +    EA+ +F   V+  
Sbjct: 350 LIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKG 409

Query: 188 CRPNV-------------------------------IPNVICYASIIDGLCKDGFVNKVR 216
           C P++                               IPN I Y +++ G C+ G +N  +
Sbjct: 410 CEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAK 469

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            LF +M  RG+ P    Y  L+   C         G  + ALE+ E+       LG+   
Sbjct: 470 ELFQEMVSRGVPPSVVTYGILLDGLC-------DNGELNKALEIFEKMQKSRMTLGIGI- 521

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
                Y  II+ +C    VD A  LF  +  +G+ PDVV Y+ +I G C  G + +A  L
Sbjct: 522 -----YNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADML 576

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
           F  ++ +GC PD  +YN LI ++     +  ++ L  EM   G   D+S I    ++   
Sbjct: 577 FRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSD 636

Query: 397 LHNTKFELDL 406
               K  LD+
Sbjct: 637 RRLDKSFLDM 646



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 132/294 (44%), Gaps = 36/294 (12%)

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
           EL  I H D+ +   +IN  C+   +  A  +       G  PD + +S+L++G+CL GR
Sbjct: 126 ELNGIEH-DMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGR 184

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------ 383
           + +A  L   +      PD  + +TLIN      +V EAL L   M+  G +PD      
Sbjct: 185 VSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGP 244

Query: 384 ---------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
                    NS +  A +LFR +     +  +  ++ ++D LCK      A  LF ++  
Sbjct: 245 VLNRLCKSGNSAL--ALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEM 302

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK----------------IRE--CLK 476
            G + +VVTY+ +I GLC +G  +    +L +M  +                ++E   L+
Sbjct: 303 KGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLE 362

Query: 477 AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           A EL ++M  R + PD IT + L +   K+   HE   +    +S+  E   +T
Sbjct: 363 AKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVT 416



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 101/255 (39%), Gaps = 40/255 (15%)

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           LSY   + +   D+ V+ A +LF  M     +P  + ++ L        + D        
Sbjct: 65  LSYKERLRNGIVDIKVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKG 124

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN 399
           +E  G   D  +   +IN Y + +K+  A S+ G    +G  PD                
Sbjct: 125 MELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDT--------------- 169

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
                    F+ LV+G C   R+  A  L  ++      P++VT + +I GLC++G + +
Sbjct: 170 -------ITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSE 222

Query: 460 AYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEE 501
           A  L+  M E                  K      A++L  KM +R +K   +  SI+ +
Sbjct: 223 ALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVID 282

Query: 502 LLNKDENCHECMNLL 516
            L KD +  + ++L 
Sbjct: 283 SLCKDGSFDDALSLF 297


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 165/577 (28%), Positives = 257/577 (44%), Gaps = 141/577 (24%)

Query: 41  SNSVSTVEEKTKLLKYLS---------ENSKSG--EVELNDALCFFNYMIHMQPTPFMPS 89
           SN    +E+ T LL Y S         E  ++G  ++++NDA+  F  MI  +P P    
Sbjct: 13  SNFTQILEKGTSLLHYSSITEAKLSYKERLRNGIVDIKVNDAIDLFESMIQSRPLPTPID 72

Query: 90  FNSLLGALAGKKYY-------------------------VNFICLSERL----------N 114
           FN L  A+A  K Y                         +N  C  ++L           
Sbjct: 73  FNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAW 132

Query: 115 TIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFT 174
            +G  PD ++ + L+N FC    VS+A   + R++     PD+VT+  LI GLC++G+ +
Sbjct: 133 KLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVS 192

Query: 175 EASGLFTKFVAFDCRP-------------------------------NVIPNVICYASII 203
           EA  L  + V +  +P                               N+  +V+ Y+ +I
Sbjct: 193 EALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVI 252

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA------------- 250
           D LCKDG  +    LF +M+ +GI  D   Y+SLI   C    W+D              
Sbjct: 253 DSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNII 312

Query: 251 ---------------KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
                          +G    A EL+ E +           PD ++Y S+I+  CK+  +
Sbjct: 313 PDVVTFSALIDVFVKEGKLLEAKELYNEMITRG------IAPDTITYNSLIDGFCKENCL 366

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
            +A ++F  M S+G  PD+V YS LI+ YC   R+DD  +LF  I S+G IP+T +YNTL
Sbjct: 367 HEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTL 426

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRP-------------DNSCILEAAELFRTLHNTKF 402
           +  + +  K+  A  L+ EM+S GV P             DN  + +A E+F  +  ++ 
Sbjct: 427 VLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRM 486

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
            L + ++N ++ G+C + ++  AW LF  L   G +P+VVTY VMI GLC +G + +A  
Sbjct: 487 TLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEA-- 544

Query: 463 LLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
              DM            L  KM +    PD+ T +IL
Sbjct: 545 ---DM------------LFRKMKEDGCTPDDFTYNIL 566



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 159/370 (42%), Gaps = 44/370 (11%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
            +DAL  FN M        + +++SL+G L     + +   +   +    ++PD V+ + 
Sbjct: 261 FDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSA 320

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++ F K   + +A      ++ +  +PD +T   LI G C +    EA+ +F   V+  
Sbjct: 321 LIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKG 380

Query: 188 CRPNV-------------------------------IPNVICYASIIDGLCKDGFVNKVR 216
           C P++                               IPN I Y +++ G C+ G +N  +
Sbjct: 381 CEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAK 440

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            LF +M  RG+ P    Y  L+   C         G  + ALE+ E+       LG+   
Sbjct: 441 ELFQEMVSRGVPPSVVTYGILLDGLC-------DNGELNKALEIFEKMQKSRMTLGIGI- 492

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
                Y  II+ +C    VD A  LF  +  +G+ PDVV Y+ +I G C  G + +A  L
Sbjct: 493 -----YNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADML 547

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
           F  ++ +GC PD  +YN LI ++     +  ++ L  EM   G   D+S I    ++   
Sbjct: 548 FRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSD 607

Query: 397 LHNTKFELDL 406
               K  LD+
Sbjct: 608 RRLDKSFLDM 617



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 132/294 (44%), Gaps = 36/294 (12%)

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
           EL  I H D+ +   +IN  C+   +  A  +       G  PD + +S+L++G+CL GR
Sbjct: 97  ELNGIEH-DMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGR 155

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------ 383
           + +A  L   +      PD  + +TLIN      +V EAL L   M+  G +PD      
Sbjct: 156 VSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGP 215

Query: 384 ---------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
                    NS +  A +LFR +     +  +  ++ ++D LCK      A  LF ++  
Sbjct: 216 VLNRLCKSGNSAL--ALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEM 273

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK----------------IRE--CLK 476
            G + +VVTY+ +I GLC +G  +    +L +M  +                ++E   L+
Sbjct: 274 KGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLE 333

Query: 477 AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           A EL ++M  R + PD IT + L +   K+   HE   +    +S+  E   +T
Sbjct: 334 AKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVT 387



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 101/255 (39%), Gaps = 40/255 (15%)

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           LSY   + +   D+ V+ A +LF  M     +P  + ++ L        + D        
Sbjct: 36  LSYKERLRNGIVDIKVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKG 95

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN 399
           +E  G   D  +   +IN Y + +K+  A S+ G    +G  PD                
Sbjct: 96  MELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDT--------------- 140

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
                    F+ LV+G C   R+  A  L  ++      P++VT + +I GLC++G + +
Sbjct: 141 -------ITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSE 193

Query: 460 AYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEE 501
           A  L+  M E                  K      A++L  KM +R +K   +  SI+ +
Sbjct: 194 ALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVID 253

Query: 502 LLNKDENCHECMNLL 516
            L KD +  + ++L 
Sbjct: 254 SLCKDGSFDDALSLF 268


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 140/506 (27%), Positives = 233/506 (46%), Gaps = 101/506 (19%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           +++L+DA+  F  M+  +P P +  FN LL A+A  K +   I L E++  + ++    +
Sbjct: 63  DMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYT 122

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            NIL+NCFC+   +S A   LG++++  + P +VTL  L+ G C   + ++A  L  + V
Sbjct: 123 YNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV 182

Query: 185 AFDCRPNVI-------------------------------PNVICYASIIDGLCKDG--- 210
               RP+ I                               PN++ Y  +++GLCK G   
Sbjct: 183 EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTD 242

Query: 211 ----FVNKVRV----------------------------LFLDMKGRGIYPDAFVYNSLI 238
                +NK+                              LF +M+ +GI P+   Y+SLI
Sbjct: 243 LALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLI 302

Query: 239 RVYCCAVNWEDAKGNTSAALE--LHEEFVNGNGELGVICH-------------------- 276
              C    W DA    S  +E  ++   V  N  +                         
Sbjct: 303 SCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSID 362

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PD+ +Y S++N  C    +DKAK++F  M S+   PDVV Y++LI G+C   R++D  +L
Sbjct: 363 PDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTEL 422

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------- 383
           F  +   G + DT +Y TLI         + A  ++ +M+S GV PD             
Sbjct: 423 FREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCN 482

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
           N  + +A E+F  +  ++ +LD+ ++  +++G+CK+ ++   W+LF  L   G +PNVVT
Sbjct: 483 NGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVT 542

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEE 469
           Y  MI GLC +  +++AY LL  M+E
Sbjct: 543 YNTMISGLCSKRLLQEAYALLKKMKE 568



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/393 (26%), Positives = 191/393 (48%), Gaps = 45/393 (11%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G+ +L  AL   N M   +    +  FN+++ +L   ++  + + L + + T G+ P+
Sbjct: 237 KRGDTDL--ALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPN 294

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+ + L++C C     SDA   L  ++ K  +P++VT   LI     +GKF EA  L+ 
Sbjct: 295 VVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYD 354

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
             +    + ++ P++  Y S+++G C    ++K + +F  M  +  +PD   YN+LI+ +
Sbjct: 355 DMI----KRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGF 410

Query: 242 CCAVNWEDAK------------GNTSAALELHEE-FVNGNGE---------LGVICHPDV 279
           C +   ED              G+T     L +  F +G+ +         +     PD+
Sbjct: 411 CKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDI 470

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           ++Y  +++ LC +  ++KA E+F  M+   I  D+ +Y+++I+G C  G++DD   LF S
Sbjct: 471 MTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCS 530

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCI-------- 387
           +  +G  P+  +YNT+I+       ++EA +L  +M   G  P+    N+ I        
Sbjct: 531 LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGD 590

Query: 388 -LEAAELFRTLHNTKFELDLT----VFNCLVDG 415
              +AEL R + + +F  D +    V N L DG
Sbjct: 591 KAASAELIREMRSCRFVGDASTIGLVANMLHDG 623



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 106/249 (42%), Gaps = 31/249 (12%)

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y  I+ +   D+ +D A  LF  M     +P +V ++ L+     M + D    L   ++
Sbjct: 53  YREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQ 112

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC----IL 388
               +    +YN LIN + +  ++  AL+L G+M+ +G  P         +  C    I 
Sbjct: 113 RLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRIS 172

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
           +A  L   +    +  D   F  L+ GL    +   A  L  ++ + G +PN+VTY V++
Sbjct: 173 DAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVV 232

Query: 449 CGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVK 490
            GLC  G  + A +LL  ME                   K R    A+ L  +M  + ++
Sbjct: 233 NGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIR 292

Query: 491 PDEITVSIL 499
           P+ +T S L
Sbjct: 293 PNVVTYSSL 301


>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 150/492 (30%), Positives = 236/492 (47%), Gaps = 81/492 (16%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  +++AL  F YM+    T F+ +                 + L +++  IGL P  ++
Sbjct: 189 EDRISEALALFGYMVE---TGFLEA-----------------VALFDQMVEIGLTPVVIT 228

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N L+N  C    V +A   + +++ K    DVVT G ++ G+C  G    A  L +K  
Sbjct: 229 FNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKME 288

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
                 ++ P+V+ Y++IID LCKDG  +  + LF +M  +GI P+ F YN +I  +C  
Sbjct: 289 ----ETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSF 344

Query: 245 VNWEDAKGNTSAALE--LHEEFVNGNG------------ELGVICH--------PDVLSY 282
             W DA+      +E  ++ + +  N             E   +C         PD ++Y
Sbjct: 345 GRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTY 404

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
            S+I   CK    D AK +F  M S    PDVV ++++ID YC   R+D+  +L   I  
Sbjct: 405 NSMIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEGMQLLREISR 460

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILE 389
            G + +T++YNTLI+ + +++ +  A  L+ EMIS GV PD             N  + E
Sbjct: 461 RGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEE 520

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
           A ELF  +  +K +LD   +N ++ G+CK  ++  AW+LF  LP +G EP+V TY VMI 
Sbjct: 521 ALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMIS 580

Query: 450 GLCIEGGIEKAYDLLPDMEEK------------IRECLKA------IELLHKMAKRYVKP 491
           G C +  I  A  L   M++             IR CLKA      IEL+ +M       
Sbjct: 581 GFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSG 640

Query: 492 DEITVSILEELL 503
           D  T+ + EE++
Sbjct: 641 DAFTIKMAEEII 652



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 139/470 (29%), Positives = 220/470 (46%), Gaps = 46/470 (9%)

Query: 23  NSKKPISLN-SENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHM 81
           NS++ I    +E    SL S +  T E +   LK  S   KS    L+DA+ FF+YM+  
Sbjct: 45  NSRRLIHGRVAEKGTKSLPSLTQVTFEGEELKLKSGSHYFKS----LDDAIDFFDYMVRS 100

Query: 82  QPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDA 141
           +P       N ++G           I L  ++    +  +  S NIL+ CFC    +S +
Sbjct: 101 RPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFS 160

Query: 142 FVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA---------FD--CRP 190
               G++ +  F PDVVT   L+ GLC++ + +EA  LF   V          FD     
Sbjct: 161 LSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEI 220

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
            + P VI + ++I+GLC +G V +   L   M G+G++ D   Y +++   C        
Sbjct: 221 GLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMC-------K 273

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
            G+T +AL L  +    +        PDV+ Y +II+ LCKD     A+ LF +M  +GI
Sbjct: 274 MGDTKSALNLLSKMEETH------IKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGI 327

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
            P+V  Y+ +IDG+C  GR  DA++L   +      PD  ++N LI++  K  K+ EA  
Sbjct: 328 APNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEK 387

Query: 371 LYGEMISMGVRPD----NSCIL---------EAAELFRTLHNTKFELDLTVFNCLVDGLC 417
           L  EM+   + PD    NS I          +A  +F  + +     D+  FN ++D  C
Sbjct: 388 LCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASP----DVVTFNTIIDVYC 443

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           ++ R+    +L +++ R G   N  TY  +I G C    +  A DL  +M
Sbjct: 444 RAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEM 493



 Score = 47.0 bits (110), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 70/175 (40%), Gaps = 4/175 (2%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           LN A   F  MI     P   + N LL      +     + L E +    +  D V+ NI
Sbjct: 483 LNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNI 542

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           +++  CK   V +A+     +      PDV T   +I G C +   ++A+ LF K     
Sbjct: 543 IIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNG 602

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
             P+       Y ++I G  K G ++K   L  +M+  G   DAF       + C
Sbjct: 603 HEPDNST----YNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMAEEIIC 653


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 140/506 (27%), Positives = 233/506 (46%), Gaps = 101/506 (19%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           +++L+DA+  F  M+  +P P +  FN LL A+A  K +   I L E++  + ++    +
Sbjct: 25  DMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYT 84

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            NIL+NCFC+   +S A   LG++++  + P +VTL  L+ G C   + ++A  L  + V
Sbjct: 85  YNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV 144

Query: 185 AFDCRPNVI-------------------------------PNVICYASIIDGLCKDG--- 210
               RP+ I                               PN++ Y  +++GLCK G   
Sbjct: 145 EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTD 204

Query: 211 ----FVNKVRV----------------------------LFLDMKGRGIYPDAFVYNSLI 238
                +NK+                              LF +M+ +GI P+   Y+SLI
Sbjct: 205 LALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLI 264

Query: 239 RVYCCAVNWEDAKGNTSAALE--LHEEFVNGNGELGVICH-------------------- 276
              C    W DA    S  +E  ++   V  N  +                         
Sbjct: 265 SCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSID 324

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PD+ +Y S++N  C    +DKAK++F  M S+   PDVV Y++LI G+C   R++D  +L
Sbjct: 325 PDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTEL 384

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------- 383
           F  +   G + DT +Y TLI         + A  ++ +M+S GV PD             
Sbjct: 385 FREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCN 444

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
           N  + +A E+F  +  ++ +LD+ ++  +++G+CK+ ++   W+LF  L   G +PNVVT
Sbjct: 445 NGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVT 504

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEE 469
           Y  MI GLC +  +++AY LL  M+E
Sbjct: 505 YNTMISGLCSKRLLQEAYALLKKMKE 530



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/393 (26%), Positives = 191/393 (48%), Gaps = 45/393 (11%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G+ +L  AL   N M   +    +  FN+++ +L   ++  + + L + + T G+ P+
Sbjct: 199 KRGDTDL--ALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPN 256

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+ + L++C C     SDA   L  ++ K  +P++VT   LI     +GKF EA  L+ 
Sbjct: 257 VVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYD 316

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
             +    + ++ P++  Y S+++G C    ++K + +F  M  +  +PD   YN+LI+ +
Sbjct: 317 DMI----KRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGF 372

Query: 242 CCAVNWEDAK------------GNTSAALELHEE-FVNGNGE---------LGVICHPDV 279
           C +   ED              G+T     L +  F +G+ +         +     PD+
Sbjct: 373 CKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDI 432

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           ++Y  +++ LC +  ++KA E+F  M+   I  D+ +Y+++I+G C  G++DD   LF S
Sbjct: 433 MTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCS 492

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCI-------- 387
           +  +G  P+  +YNT+I+       ++EA +L  +M   G  P+    N+ I        
Sbjct: 493 LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGD 552

Query: 388 -LEAAELFRTLHNTKFELDLT----VFNCLVDG 415
              +AEL R + + +F  D +    V N L DG
Sbjct: 553 KAASAELIREMRSCRFVGDASTIGLVANMLHDG 585



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 106/249 (42%), Gaps = 31/249 (12%)

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y  I+ +   D+ +D A  LF  M     +P +V ++ L+     M + D    L   ++
Sbjct: 15  YREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQ 74

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC----IL 388
               +    +YN LIN + +  ++  AL+L G+M+ +G  P         +  C    I 
Sbjct: 75  RLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRIS 134

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
           +A  L   +    +  D   F  L+ GL    +   A  L  ++ + G +PN+VTY V++
Sbjct: 135 DAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVV 194

Query: 449 CGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVK 490
            GLC  G  + A +LL  ME                   K R    A+ L  +M  + ++
Sbjct: 195 NGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIR 254

Query: 491 PDEITVSIL 499
           P+ +T S L
Sbjct: 255 PNVVTYSSL 263


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 155/521 (29%), Positives = 244/521 (46%), Gaps = 79/521 (15%)

Query: 51  TKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLS 110
           T L   L  + +  E  L  +   FN ++++ PTP +  F  +LG+L     Y   I L 
Sbjct: 23  TSLYSQLHHHHQDDEHSLVSS---FNRILNINPTPPIFEFGKILGSLVKINCYQTAISLH 79

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
             +   G+  D V+ NIL+NCF ++     +F     IL+K + P+ +TL  LI+GLC++
Sbjct: 80  REMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLK 139

Query: 171 GKFTEASGLFTKFVAFDCRPN-------------------------------VIPNVICY 199
           G+  +A     K VA     N                               V PNV+ Y
Sbjct: 140 GQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMY 199

Query: 200 ASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE 259
            +IID +CK   VN+   L+ +M  +GI PD   Y++LI  +C      DA G  +  + 
Sbjct: 200 NTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMIS 259

Query: 260 LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSS 319
             EE            +PDV ++  +++  CK+  V +AK +   M  +GI PDVV Y S
Sbjct: 260 --EEI-----------NPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCS 306

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           L+DGYCL+ +++ A+ +F ++   G   +  SYN +IN + KI+KV+EA++L+ EM    
Sbjct: 307 LMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKN 366

Query: 380 VRPD----NSC---------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           + PD    NS          I  A +L   +H+     D   +N ++D LCK+ ++  A 
Sbjct: 367 IIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAI 426

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL----------- 475
            L  K+   G +P++ TYT++I GLC  G ++ A ++  D+  K                
Sbjct: 427 ALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGF 486

Query: 476 -------KAIELLHKMAKRYVKPDEITVS-ILEELLNKDEN 508
                  KA+ LL KM      P+  T   I+  L  KDEN
Sbjct: 487 CDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDEN 527



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 161/348 (46%), Gaps = 52/348 (14%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +N+A   ++ M+    +P + ++++L+          + I L  ++ +  + PD  + +I
Sbjct: 212 VNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSI 271

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++ FCK   V +A   L  ++++   PDVVT   L+ G C+  +  +A  +F       
Sbjct: 272 LVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTM---- 327

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            +  V  NV  Y  +I+G CK   V++   LF +M  + I PD   YNSLI   C     
Sbjct: 328 AQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLC----- 382

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               G  S AL+L +E      + GV    D ++Y SI+++LCK+  VDKA  L   MK 
Sbjct: 383 --KSGKISYALKLVDEM----HDRGV--PHDKITYNSILDALCKNHQVDKAIALLTKMKD 434

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLF------------------------------ 337
            GI PD+  Y+ LIDG C  GR+ DA+ +F                              
Sbjct: 435 EGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDK 494

Query: 338 -----VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
                  +E  GCIP+  +Y  +I S  + ++ + A  L  EMI+ G+
Sbjct: 495 ALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMIARGL 542



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 174/394 (44%), Gaps = 71/394 (18%)

Query: 160 LGCLIRGLCMQGKFT-----EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
           LG L++  C Q   +     E +G+ +  V F    N++ N  C++ +       G  + 
Sbjct: 63  LGSLVKINCYQTAISLHREMEFNGIASDLVTF----NILIN--CFSQL-------GHTHF 109

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
              +F ++  +G  P+A    +LI+  C        KG    AL  H++ V     L  +
Sbjct: 110 SFSVFANILKKGYEPNAITLTTLIKGLCL-------KGQIHQALHFHDKVVALGFHLNKV 162

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
           C      Y ++IN LCK      A +L   +  + + P+VV+Y+++ID  C +  +++A 
Sbjct: 163 C------YGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAF 216

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
            L+  + S+G  PD  +Y+ LI+ +  + K+ +A+ L+ +MIS  + PD           
Sbjct: 217 DLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPD----------- 265

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
                      +  F+ LVDG CK  R++ A  +   + + G +P+VVTY  ++ G C+ 
Sbjct: 266 -----------VYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLV 314

Query: 455 GGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITV 496
             + KA  +   M +                  KI++  +A+ L  +M  + + PD +T 
Sbjct: 315 KQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTY 374

Query: 497 SILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           + L + L K       + L+     R     K+T
Sbjct: 375 NSLIDGLCKSGKISYALKLVDEMHDRGVPHDKIT 408



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 115/259 (44%), Gaps = 30/259 (11%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P +  +  I+ SL K      A  L  +M+  GI  D+V ++ LI+ +  +G    +  +
Sbjct: 54  PPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSV 113

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC---------- 386
           F +I  +G  P+  +  TLI       ++ +AL  + +++++G   +  C          
Sbjct: 114 FANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCK 173

Query: 387 ---ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                 A +L R +     + ++ ++N ++D +CK   +  A++L+ ++   G  P+VVT
Sbjct: 174 VGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVT 233

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELL 503
           Y+ +I G CI G +  A                 I L +KM    + PD  T SIL +  
Sbjct: 234 YSALISGFCILGKLNDA-----------------IGLFNKMISEEINPDVYTFSILVDGF 276

Query: 504 NKDENCHECMNLLPSFLSR 522
            K+    E  N+L   + +
Sbjct: 277 CKEGRVKEAKNVLAMMMKQ 295



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 128/315 (40%), Gaps = 52/315 (16%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLL------GALAGKKYYVNFI------------- 107
           +LNDA+  FN MI  +  P + +F+ L+      G +   K  +  +             
Sbjct: 246 KLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYC 305

Query: 108 ------CLSERLNTI----------GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRK 151
                 CL +++N            G+  +  S NI++N FCK+  V +A      +  K
Sbjct: 306 SLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCK 365

Query: 152 VFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF 211
              PDVVT   LI GLC  GK + A     K V       V  + I Y SI+D LCK+  
Sbjct: 366 NIIPDVVTYNSLIDGLCKSGKISYA----LKLVDEMHDRGVPHDKITYNSILDALCKNHQ 421

Query: 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGEL 271
           V+K   L   MK  GI PD + Y  LI   C     +DA+        + E+ +     +
Sbjct: 422 VDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQ-------NIFEDLLVKGYNI 474

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
                  V +Y  +I   C + L DKA  L   M+  G IP+   Y  +I         D
Sbjct: 475 ------TVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDEND 528

Query: 332 DARKLFVSIESEGCI 346
            A KL   + + G +
Sbjct: 529 MAEKLLREMIARGLL 543



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/188 (20%), Positives = 85/188 (45%), Gaps = 18/188 (9%)

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCL 412
           ++L++S+++I  +     ++     +G     +C   A  L R +       DL  FN L
Sbjct: 38  HSLVSSFNRILNINPTPPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNIL 97

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA------------ 460
           ++   +      ++ +F  + + G EPN +T T +I GLC++G I +A            
Sbjct: 98  INCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGF 157

Query: 461 ------YDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMN 514
                 Y  L +   K+ +   A++LL ++  + V+P+ +  + + + + K +  +E  +
Sbjct: 158 HLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFD 217

Query: 515 LLPSFLSR 522
           L    +S+
Sbjct: 218 LYSEMVSK 225


>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
 gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 666

 Score =  221 bits (564), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 149/492 (30%), Positives = 236/492 (47%), Gaps = 81/492 (16%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  +++AL  F YM+    T F+ +                 + L +++  IGL P  ++
Sbjct: 189 EDRISEALALFGYMV---ETGFLEA-----------------VALFDQMVEIGLTPVVIT 228

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N L+N  C    V +A   + +++ K    DVVT G ++ G+C  G    A  L +K  
Sbjct: 229 FNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKME 288

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
                 ++ P+V+ Y++IID LCKDG  +  + LF +M  +GI P+ F YN +I  +C  
Sbjct: 289 ----ETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSF 344

Query: 245 VNWEDAKGNTSAALE--LHEEFVNGNG------------ELGVICH--------PDVLSY 282
             W DA+      +E  ++ + +  N             E   +C         PD ++Y
Sbjct: 345 GRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTY 404

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
            S+I   CK    D AK +F  M S    PDVV ++++ID YC   R+D+  +L   I  
Sbjct: 405 NSMIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEGMQLLREISR 460

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILE 389
            G + +T++YNTLI+ + +++ +  A  L+ EMIS GV PD             N  + E
Sbjct: 461 RGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEE 520

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
           A ELF  +  +K +LD   +N ++ G+CK  ++  AW+LF  LP +G EP+V TY VMI 
Sbjct: 521 ALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMIS 580

Query: 450 GLCIEGGIEKAYDLLPDMEEK------------IRECLKA------IELLHKMAKRYVKP 491
           G C +  I  A  L   M++             IR CLKA      IEL+ +M       
Sbjct: 581 GFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSG 640

Query: 492 DEITVSILEELL 503
           D  T+ ++ +L+
Sbjct: 641 DAFTIKMVADLI 652



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 139/470 (29%), Positives = 220/470 (46%), Gaps = 46/470 (9%)

Query: 23  NSKKPISLN-SENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHM 81
           NS++ I    +E    SL S +  T E +   LK  S   KS    L+DA+ FF+YM+  
Sbjct: 45  NSRRLIHGRVAEKGTKSLPSLTQVTFEGEELKLKSGSHYFKS----LDDAIDFFDYMVRS 100

Query: 82  QPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDA 141
           +P       N ++G           I L  ++    +  +  S NIL+ CFC    +S +
Sbjct: 101 RPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFS 160

Query: 142 FVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA---------FD--CRP 190
               G++ +  F PDVVT   L+ GLC++ + +EA  LF   V          FD     
Sbjct: 161 LSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEI 220

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
            + P VI + ++I+GLC +G V +   L   M G+G++ D   Y +++   C        
Sbjct: 221 GLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMC-------K 273

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
            G+T +AL L  +    +        PDV+ Y +II+ LCKD     A+ LF +M  +GI
Sbjct: 274 MGDTKSALNLLSKMEETH------IKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGI 327

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
            P+V  Y+ +IDG+C  GR  DA++L   +      PD  ++N LI++  K  K+ EA  
Sbjct: 328 APNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEK 387

Query: 371 LYGEMISMGVRPD----NSCIL---------EAAELFRTLHNTKFELDLTVFNCLVDGLC 417
           L  EM+   + PD    NS I          +A  +F  + +     D+  FN ++D  C
Sbjct: 388 LCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASP----DVVTFNTIIDVYC 443

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           ++ R+    +L +++ R G   N  TY  +I G C    +  A DL  +M
Sbjct: 444 RAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEM 493


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  221 bits (563), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 139/439 (31%), Positives = 220/439 (50%), Gaps = 67/439 (15%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++DA+  FN M+ M+ TP +  FN +L + A  K+Y   + LS RL   G+ PD ++LNI
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+NCFC M  ++  F  L +IL++ + P  +T   LI+GLC++G+  +A     K +A  
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQG 159

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
            + + +                               PNV  Y +IID LCK   V++  
Sbjct: 160 IKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAY 219

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            LF +M  +GI  D   Y +LI  +C A   ++A G       L  E V     L  I +
Sbjct: 220 GLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIG-------LLNEMV-----LKTI-N 266

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+V +Y  ++++LCK+  V +AK +   M    + PDV+ YS+L+DGY L+  +  A+ +
Sbjct: 267 PNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHV 326

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
           F ++   G  PD  SY  LIN + K + V+EAL+L+ EM    + P              
Sbjct: 327 FNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVP-------------- 372

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
                    +  ++ L+DGLCKS R+   W+L  ++   G   NV+TY  +I GLC  G 
Sbjct: 373 --------GIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGH 424

Query: 457 IEKAYDLLPDMEEK-IREC 474
           +++A  L   M+++ IR C
Sbjct: 425 LDRAIALFNKMKDQGIRPC 443



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 122/390 (31%), Positives = 178/390 (45%), Gaps = 57/390 (14%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+    N +++  CK   VS+A+     +  K  S DVVT   LI G C+  K  EA GL
Sbjct: 197 PNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGL 256

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             + V       + PNV  Y  ++D LCK+G V + + +   M    + PD   Y++L+ 
Sbjct: 257 LNEMVL----KTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMD 312

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            Y      + A           +   N    +GV   PDV SY  +IN  CK+ +VD+A 
Sbjct: 313 GYFLVYELKKA-----------QHVFNAMSLMGVT--PDVHSYTILINGFCKNKMVDEAL 359

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            LF +M  + ++P +V YSSLIDG C  GRI     L   +   G   +  +YN+LI+  
Sbjct: 360 NLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGL 419

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            K   ++ A++L+ +M   G+RP   C                      F  L+DGLCK 
Sbjct: 420 CKNGHLDRAIALFNKMKDQGIRP---CSF-------------------TFTILLDGLCKG 457

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIE 479
            RL+ A E F+ L   G   +V  Y VMI G C +G +E+A  +L  MEE    C+    
Sbjct: 458 GRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEE--NGCV---- 511

Query: 480 LLHKMAKRYVKPDEITVS-ILEELLNKDEN 508
                      P+ +T   I+  L  KDEN
Sbjct: 512 -----------PNAVTFDIIINALFKKDEN 530



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 141/286 (49%), Gaps = 27/286 (9%)

Query: 108 CLSERLN-TIGLL---------PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDV 157
           C++ +L   IGLL         P+  + NIL++  CK   V +A   L  +L+    PDV
Sbjct: 245 CIASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDV 304

Query: 158 VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRV 217
           +T   L+ G  +  +  +A  +F           V P+V  Y  +I+G CK+  V++   
Sbjct: 305 ITYSTLMDGYFLVYELKKAQHVFNAMSLM----GVTPDVHSYTILINGFCKNKMVDEALN 360

Query: 218 LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277
           LF +M  + + P    Y+SLI   C         G  S   +L +E      + G+    
Sbjct: 361 LFKEMHQKNMVPGIVTYSSLIDGLC-------KSGRISYVWDLIDEM----RDRGI--PA 407

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           +V++Y S+I+ LCK+  +D+A  LF  MK +GI P    ++ L+DG C  GR+ DA++ F
Sbjct: 408 NVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLDGLCKGGRLKDAQEAF 467

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
             + ++G   D   YN +IN + K   +EEAL++  +M   G  P+
Sbjct: 468 QDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGCVPN 513



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 157/322 (48%), Gaps = 33/322 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIGLL----- 119
           +L +A+   N M+     P + ++N L+ AL   GK        + E  N + ++     
Sbjct: 249 KLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGK--------VKEAKNVLAVMLKACV 300

Query: 120 -PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
            PD ++ + LM+ +  +  +  A      +     +PDV +   LI G C      EA  
Sbjct: 301 KPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALN 360

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           LF +      + N++P ++ Y+S+IDGLCK G ++ V  L  +M+ RGI  +   YNSLI
Sbjct: 361 LFKEM----HQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLI 416

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
              C         G+   A+ L     N   + G+   P   ++  +++ LCK   +  A
Sbjct: 417 DGLC-------KNGHLDRAIAL----FNKMKDQGI--RPCSFTFTILLDGLCKGGRLKDA 463

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
           +E F D+ ++G   DV  Y+ +I+G+C  G +++A  +   +E  GC+P+  +++ +IN+
Sbjct: 464 QEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGCVPNAVTFDIIINA 523

Query: 359 YSKIEKVEEALSLYGEMISMGV 380
             K ++ ++A  L  +MI  G+
Sbjct: 524 LFKKDENDKAEKLLRQMICRGL 545



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 110/235 (46%), Gaps = 19/235 (8%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           ++ +G+ PD  S  IL+N FCK   V +A      + +K   P +VT   LI GLC  G+
Sbjct: 330 MSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGR 389

Query: 173 FTEASGLFTKFVAFDCRPNVIP-NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
            +    L  +      R   IP NVI Y S+IDGLCK+G +++   LF  MK +GI P +
Sbjct: 390 ISYVWDLIDEM-----RDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCS 444

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
           F +  L+   C     +DA+       E  ++ +          H DV  Y  +IN  CK
Sbjct: 445 FTFTILLDGLCKGGRLKDAQ-------EAFQDLLTKG------YHLDVYKYNVMINGHCK 491

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
             L+++A  +   M+  G +P+ V +  +I+        D A KL   +   G +
Sbjct: 492 QGLLEEALTMLSKMEENGCVPNAVTFDIIINALFKKDENDKAEKLLRQMICRGLL 546



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 143/348 (41%), Gaps = 53/348 (15%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P +I +  I+D   K    +    L   ++ +GI PD    N LI  +C         G 
Sbjct: 57  PPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNILINCFC-------HMGQ 109

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
            +    +  + +    +      P  +++ ++I  LC    V+KA      + ++GI  D
Sbjct: 110 ITFGFSVLAKILKRGYQ------PHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFD 163

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
            V Y +LI+G C +G    A KL   I+     P+   YNT+I++  K + V EA  L+ 
Sbjct: 164 QVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFS 223

Query: 374 EMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
           EM + G+  D                      +  +  L+ G C + +L+ A  L  ++ 
Sbjct: 224 EMTAKGISAD----------------------VVTYTTLIYGFCIASKLKEAIGLLNEMV 261

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK------------------IRECL 475
                PNV TY +++  LC EG +++A ++L  M +                   + E  
Sbjct: 262 LKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELK 321

Query: 476 KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
           KA  + + M+   V PD  + +IL     K++   E +NL      +N
Sbjct: 322 KAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKN 369


>gi|356561776|ref|XP_003549154.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 567

 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 149/496 (30%), Positives = 247/496 (49%), Gaps = 75/496 (15%)

Query: 32  SENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFN 91
           S   P S    S+S    +T+LL  +    +S +  ++ ++ FF+ M+ + P P +  FN
Sbjct: 22  SNTHPFSTSPPSISDAAARTRLLNSI-RTLQSADAAVSVSVDFFHRMLTLNPFPCIQDFN 80

Query: 92  SLLGALAGKKYYVNFICLSERLNTIGL-LPDFVSLNILMNCFCKMIGVSDAFVALGRILR 150
            L G +A  +++   I L + L+++G  + D  +LNIL+NC C++   +  F  LG + +
Sbjct: 81  LLFGIVAKSQHFATAISLIKTLHSLGYEIADVCTLNILINCLCRLRKTTLGFAVLGLMTK 140

Query: 151 KVFSPDVVTLG------CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
               P +VTL       C++ GLC  G  + A     K V    + N+ PNV+ Y +I+D
Sbjct: 141 IGLEPTLVTLNTIANGLCIVNGLCKIGDTSGALESLKKMV----KRNLEPNVVVYNAILD 196

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV-NWEDAKGNTSAALELHEE 263
           GLCK G V +   LF +M    + P+   YN LI+  C  V  W +  G       L  E
Sbjct: 197 GLCKRGLVGEALGLFYEMGVVNVEPNVVTYNCLIQGLCGEVGGWREGVG-------LFNE 249

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
            V    E G++  PDV ++  ++N  CK+ L+ +A+ +   M   G+  +VV Y+SLI G
Sbjct: 250 MV---AEKGIV--PDVQTFSILVNGFCKEGLLLRAESMVGFMIRIGVELNVVTYNSLISG 304

Query: 324 YCLMGRIDDARKLF--VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
           YCL  R+++A ++F  +  E EGC+P   +YN+LI+ + K++KV +A+SL  EM+  G+ 
Sbjct: 305 YCLRNRMEEAVRVFDLMVREGEGCLPSVVTYNSLIHGWCKVKKVNKAMSLLSEMVGKGLD 364

Query: 382 PD------------------------------------NSCIL------------EAAEL 393
           PD                                     +C +            EA  L
Sbjct: 365 PDVFTWTSLIGGFFEVGKPLAAKELFITMKDQGQVPILQTCAVVLDGLYKCWLDSEAMTL 424

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
           FR +  +  +LD+ ++N ++DG+CK  +L  A +L   +   G + +  T+ +MI GLC 
Sbjct: 425 FRAMEKSGLDLDIVIYNIMLDGMCKMGKLNDARKLLSFVLVKGLKIDSYTWNIMIKGLCR 484

Query: 454 EGGIEKAYDLLPDMEE 469
           EG ++ A +LL  M+E
Sbjct: 485 EGLLDDAEELLRKMKE 500



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 158/322 (49%), Gaps = 20/322 (6%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGK--KYYVNFICLSERLNTIGLLPDFVSL 125
           + +AL  F  M  +   P + ++N L+  L G+   +       +E +   G++PD  + 
Sbjct: 204 VGEALGLFYEMGVVNVEPNVVTYNCLIQGLCGEVGGWREGVGLFNEMVAEKGIVPDVQTF 263

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           +IL+N FCK   +  A   +G ++R     +VVT   LI G C++ +  EA  +F   V 
Sbjct: 264 SILVNGFCKEGLLLRAESMVGFMIRIGVELNVVTYNSLISGYCLRNRMEEAVRVFDLMVR 323

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
                  +P+V+ Y S+I G CK   VNK   L  +M G+G+ PD F + SLI  +    
Sbjct: 324 EG--EGCLPSVVTYNSLIHGWCKVKKVNKAMSLLSEMVGKGLDPDVFTWTSLIGGF---- 377

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII-NSLCKDVLVDKAKELFLD 304
            +E  K      L   E F+    +  V     +L  C+++ + L K  L  +A  LF  
Sbjct: 378 -FEVGK-----PLAAKELFITMKDQGQV----PILQTCAVVLDGLYKCWLDSEAMTLFRA 427

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M+  G+  D+V+Y+ ++DG C MG+++DARKL   +  +G   D+ ++N +I    +   
Sbjct: 428 MEKSGLDLDIVIYNIMLDGMCKMGKLNDARKLLSFVLVKGLKIDSYTWNIMIKGLCREGL 487

Query: 365 VEEALSLYGEMISMGVRPDNSC 386
           +++A  L  +M   G  P N C
Sbjct: 488 LDDAEELLRKMKENGC-PPNKC 508



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 109/244 (44%), Gaps = 32/244 (13%)

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           I+N LCK      A E    M  R + P+VVVY++++DG C  G + +A  LF  +    
Sbjct: 159 IVNGLCKIGDTSGALESLKKMVKRNLEPNVVVYNAILDGLCKRGLVGEALGLFYEMGVVN 218

Query: 345 CIPDTSSYNTLINSY-SKIEKVEEALSLYGEMIS-MGVRPDNSCILEAAELFRTLHNTKF 402
             P+  +YN LI     ++    E + L+ EM++  G+ PD                   
Sbjct: 219 VEPNVVTYNCLIQGLCGEVGGWREGVGLFNEMVAEKGIVPD------------------- 259

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
              +  F+ LV+G CK   L  A  +   + R G E NVVTY  +I G C+   +E+A  
Sbjct: 260 ---VQTFSILVNGFCKEGLLLRAESMVGFMIRIGVELNVVTYNSLISGYCLRNRMEEAVR 316

Query: 463 LLPDMEEKIRECLKAI----ELLHKMAKRYVKPDEITVSILEELLNK--DENCHECMNLL 516
           +   M  +   CL ++     L+H   K  VK     +S+L E++ K  D +     +L+
Sbjct: 317 VFDLMVREGEGCLPSVVTYNSLIHGWCK--VKKVNKAMSLLSEMVGKGLDPDVFTWTSLI 374

Query: 517 PSFL 520
             F 
Sbjct: 375 GGFF 378



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 75/174 (43%), Gaps = 36/174 (20%)

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSCILE------- 389
           I D  + N LIN   ++ K     ++ G M  +G+ P         +  CI+        
Sbjct: 109 IADVCTLNILINCLCRLRKTTLGFAVLGLMTKIGLEPTLVTLNTIANGLCIVNGLCKIGD 168

Query: 390 ---AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTV 446
              A E  + +     E ++ V+N ++DGLCK   +  A  LF ++     EPNVVTY  
Sbjct: 169 TSGALESLKKMVKRNLEPNVVVYNAILDGLCKRGLVGEALGLFYEMGVVNVEPNVVTYNC 228

Query: 447 MICGLCIE-GGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           +I GLC E GG  +   L  +M                +A++ + PD  T SIL
Sbjct: 229 LIQGLCGEVGGWREGVGLFNEM----------------VAEKGIVPDVQTFSIL 266


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 138/493 (27%), Positives = 241/493 (48%), Gaps = 93/493 (18%)

Query: 57  LSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           LS N  S E++L+DA+  F  M+  +P P +  F+ LL A+A    +   I L E++  +
Sbjct: 52  LSRNGLS-ELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNL 110

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC-------- 168
           G+  +  + +IL+NCFC+   +  A   LG++++  + P++VTL  L+ G C        
Sbjct: 111 GMPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEA 170

Query: 169 ---------------------------MQGKFTEASGLFTKFVAFDCRPNVI-------- 193
                                      +  K +EA  L  + VA  C+P+++        
Sbjct: 171 VALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNG 230

Query: 194 -----------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
                                  P V+ Y +IIDGLCK+  ++    LF +M+ +GI P+
Sbjct: 231 LCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPN 290

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
              Y+SLI   C    W DA    S  +E                +PDV ++ ++I++  
Sbjct: 291 VVTYSSLISCLCNYGRWSDASRLLSDMIERK-------------INPDVFTFSALIDAFV 337

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K+  + +A++L+ +M  R I P +V YSSLI+G+C+  R+D+A+++F  + S+ C PD  
Sbjct: 338 KEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVV 397

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---SCILE----------AAELFRTL 397
           SY+TLI  + K ++V+E + L+ EM   G+  +    + +++          A E+F+ +
Sbjct: 398 SYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEM 457

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
            +     ++  +N L+DGLCK+ +L  A  +F+ L R   EP + TY +MI G+C  G +
Sbjct: 458 VSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKV 517

Query: 458 EKAYDLLPDMEEK 470
           E  +DL  ++  K
Sbjct: 518 EDGWDLFCNLSLK 530



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 172/353 (48%), Gaps = 40/353 (11%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G+ +L  A    N M   +  P +  + +++  L   K+  + + L + + T G+ P+
Sbjct: 233 KRGDTDL--AFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPN 290

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+ + L++C C     SDA   L  ++ +  +PDV T   LI     +GK  EA  L+ 
Sbjct: 291 VVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYD 350

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           + V    + ++ P+++ Y+S+I+G C    +++ + +F  M  +  +PD   Y++LI+ +
Sbjct: 351 EMV----KRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGF 406

Query: 242 CCAVNWEDA----------------------------KGNTSAALELHEEFVNGNGELGV 273
           C A   ++                              G+   A E+ +E V+       
Sbjct: 407 CKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDG----- 461

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
              P++++Y ++++ LCK+  ++KA  +F  ++   + P +  Y+ +I+G C  G+++D 
Sbjct: 462 -VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG 520

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC 386
             LF ++  +G  PD  +YNT+I+ + +    EEA +L+ EM   G  P++ C
Sbjct: 521 WDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGC 573



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 138/303 (45%), Gaps = 37/303 (12%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL----- 119
           E +L +A   ++ M+     P + +++SL          +N  C+ +RL+    +     
Sbjct: 339 EGKLVEAEKLYDEMVKRSIDPSIVTYSSL----------INGFCMHDRLDEAKQMFEFMV 388

Query: 120 -----PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFT 174
                PD VS + L+  FCK   V +       + ++    + VT   LI+GL   G   
Sbjct: 389 SKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCD 448

Query: 175 EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVY 234
            A  +F + V+      V PN++ Y +++DGLCK+G + K  V+F  ++   + P  + Y
Sbjct: 449 MAQEIFKEMVS----DGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTY 504

Query: 235 NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294
           N +I   C A   ED            + F N + + GV   PDV++Y ++I+  C+   
Sbjct: 505 NIMIEGMCKAGKVEDG----------WDLFCNLSLK-GV--KPDVVAYNTMISGFCRKGS 551

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
            ++A  LF +MK  G +P+   Y++LI      G  + + +L   + S G   D S+   
Sbjct: 552 KEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGL 611

Query: 355 LIN 357
           + N
Sbjct: 612 VTN 614


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 146/519 (28%), Positives = 236/519 (45%), Gaps = 127/519 (24%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           +++L+DA+  F  M+  +P P +  FN LL A+A    +   I L ER+  + +  D  S
Sbjct: 58  DLKLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYS 117

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC---------------- 168
            NIL+NCFC+   +  A   LG++++  + PD+VTL  L+ G C                
Sbjct: 118 YNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMF 177

Query: 169 -------------------MQGKFTEASGLFTKFVAFDCRPNVI---------------- 193
                              +  K +EA  L  + VA  C+P++                 
Sbjct: 178 VMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDID 237

Query: 194 ---------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
                           +V+ Y +IID LC    VN    LF +M  +GI P+   YNSLI
Sbjct: 238 LALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 297

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
           R  C    W DA    S  +E                +P+V+++ ++I++  K+  + +A
Sbjct: 298 RCLCNYGRWSDASRLLSDMIERK-------------INPNVVTFSALIDAFVKEGKLVEA 344

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
           ++L+ +M  R I PD+  YSSLI+G+C+  R+D+A+ +F  + S+ C P+  +YNTLI  
Sbjct: 345 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKG 404

Query: 359 YSKIEKVEEALSLYGE-----------------------------------MISMGVRPD 383
           + K ++VEE + L+ E                                   M+S GV PD
Sbjct: 405 FCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPD 464

Query: 384 ---NSCILE----------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
               S +L+          A  +F  L  +K E D+  +N +++G+CK+ ++   W+LF 
Sbjct: 465 IITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFC 524

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
            L   G +PNV+ YT MI G C +G  E+A  L  +M+E
Sbjct: 525 SLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKE 563



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 165/364 (45%), Gaps = 41/364 (11%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +NDAL  F  M +    P + ++NSL+  L     + +   L   +    + P+ V+ + 
Sbjct: 271 VNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 330

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++ F K   + +A      ++++   PD+ T   LI G CM  +  EA  +F   ++ D
Sbjct: 331 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 390

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C     PNV+ Y ++I G CK   V +   LF +M  RG+  +   YN+LI+    A + 
Sbjct: 391 C----FPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDC 446

Query: 248 EDAK----------------------------GNTSAALELHEEFVNGNGELGVICHPDV 279
           + A+                            G    AL + E       E      PD+
Sbjct: 447 DMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKME------PDI 500

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
            +Y  +I  +CK   V+   +LF  +  +G+ P+V++Y+++I G+C  G  ++A  LF  
Sbjct: 501 YTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFRE 560

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN 399
           ++ +G +P++ +YNTLI +  +      +  L  EM S G   D S I   + +   LH+
Sbjct: 561 MKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTI---SMVINMLHD 617

Query: 400 TKFE 403
            + E
Sbjct: 618 GRLE 621


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 146/519 (28%), Positives = 236/519 (45%), Gaps = 127/519 (24%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           +++L+DA+  F  M+  +P P +  FN LL A+A    +   I L ER+  + +  D  S
Sbjct: 42  DLKLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYS 101

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC---------------- 168
            NIL+NCFC+   +  A   LG++++  + PD+VTL  L+ G C                
Sbjct: 102 YNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMF 161

Query: 169 -------------------MQGKFTEASGLFTKFVAFDCRPNVI---------------- 193
                              +  K +EA  L  + VA  C+P++                 
Sbjct: 162 VMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDID 221

Query: 194 ---------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
                           +V+ Y +IID LC    VN    LF +M  +GI P+   YNSLI
Sbjct: 222 LALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 281

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
           R  C    W DA    S  +E                +P+V+++ ++I++  K+  + +A
Sbjct: 282 RCLCNYGRWSDASRLLSDMIERK-------------INPNVVTFSALIDAFVKEGKLVEA 328

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
           ++L+ +M  R I PD+  YSSLI+G+C+  R+D+A+ +F  + S+ C P+  +YNTLI  
Sbjct: 329 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKG 388

Query: 359 YSKIEKVEEALSLYGE-----------------------------------MISMGVRPD 383
           + K ++VEE + L+ E                                   M+S GV PD
Sbjct: 389 FCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPD 448

Query: 384 ---NSCILE----------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
               S +L+          A  +F  L  +K E D+  +N +++G+CK+ ++   W+LF 
Sbjct: 449 IITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFC 508

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
            L   G +PNV+ YT MI G C +G  E+A  L  +M+E
Sbjct: 509 SLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKE 547



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 165/364 (45%), Gaps = 41/364 (11%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +NDAL  F  M +    P + ++NSL+  L     + +   L   +    + P+ V+ + 
Sbjct: 255 VNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 314

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++ F K   + +A      ++++   PD+ T   LI G CM  +  EA  +F   ++ D
Sbjct: 315 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 374

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C     PNV+ Y ++I G CK   V +   LF +M  RG+  +   YN+LI+    A + 
Sbjct: 375 C----FPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDC 430

Query: 248 EDAK----------------------------GNTSAALELHEEFVNGNGELGVICHPDV 279
           + A+                            G    AL + E       E      PD+
Sbjct: 431 DMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKME------PDI 484

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
            +Y  +I  +CK   V+   +LF  +  +G+ P+V++Y+++I G+C  G  ++A  LF  
Sbjct: 485 YTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFRE 544

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN 399
           ++ +G +P++ +YNTLI +  +      +  L  EM S G   D S I   + +   LH+
Sbjct: 545 MKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTI---SMVINMLHD 601

Query: 400 TKFE 403
            + E
Sbjct: 602 GRLE 605


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 156/517 (30%), Positives = 245/517 (47%), Gaps = 58/517 (11%)

Query: 51  TKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLS 110
           T  L Y S +        + A+  F+ M+ M+P P    FN +L +L   K+Y   I L 
Sbjct: 27  TATLHYQSHSQPHYHHHHHHAVASFDRMLLMRPPPPTFHFNYILSSLVNNKHYPTVISLF 86

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           ++  + G  PD  +LNILMNCFC +  ++ AF  L  IL++ + P+ +TL  LI+GLC +
Sbjct: 87  KKFESNGATPDLCTLNILMNCFCHLTHITFAFSVLANILKRGYHPNAITLNTLIKGLCFR 146

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G+  +A     + VA         N + Y ++I+GLCK G    V  L   ++G  + PD
Sbjct: 147 GEIKKALYFHDQVVA----QGFQLNQVSYRTLINGLCKTGETKAVARLLRKLEGHSVKPD 202

Query: 231 AFVYNSLIRVYC--------CAVNWEDAKGNTSAALELHEEFVNGNGELGVI-------- 274
             +YN++I   C        C +  E      S  +  +   V G   +G +        
Sbjct: 203 VVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLN 262

Query: 275 ------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                  +PDV ++ ++I++L K+  +  AK +   M    I PDVV Y+SLIDGY  + 
Sbjct: 263 EMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLN 322

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----- 383
           ++ +A+ +F S+   G  P+  +Y T+I+   K + V+EA+SL+ EM    + PD     
Sbjct: 323 KVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYT 382

Query: 384 --------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
                   N  +  A  L + +     + D+  +  L+D LCK  RL +A E F++L   
Sbjct: 383 SLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVK 442

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEIT 495
           G   NV TY VMI GLC      +A DL   ME K   C+               PD IT
Sbjct: 443 GYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGK--GCM---------------PDAIT 485

Query: 496 V-SILEELLNKDENCHECMNLLPSFLSRNQEESKLTR 531
             +I+  L  KDEN  +   +L   ++R  +E++  R
Sbjct: 486 FKTIICALFEKDEN-DKAEKILREMIARGLQEARKVR 521



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 142/502 (28%), Positives = 223/502 (44%), Gaps = 82/502 (16%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGK-KYYVNFICLSERLNTIGLLPDFVSL 125
            L +A    N M      P + +FN+L+ AL  + K     I L+  +    + PD V+ 
Sbjct: 253 HLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKAC-IKPDVVTY 311

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           N L++ +  +  V +A      + +   +P+V T   +I GLC +    EA  LF +   
Sbjct: 312 NSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMK- 370

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
                N+IP+++ Y S+IDGLCK+  + +   L   MK +GI PD + Y  L+   C   
Sbjct: 371 ---YKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGG 427

Query: 246 NWEDAK--------GNTSAALELHEEFVNG------NGEL--------GVICHPDVLSYC 283
             E+AK              ++ +   +NG       GE         G  C PD +++ 
Sbjct: 428 RLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFK 487

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRG-----------------------IIPDVVVYSSL 320
           +II +L +    DKA+++  +M +RG                       I PDVV Y +L
Sbjct: 488 TIICALFEKDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTL 547

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           +DGY L+  +  A+ +F S+   G  P+   Y  +I+   K + V+EA+SL+ EM    +
Sbjct: 548 MDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNM 607

Query: 381 RPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
            P+             N  +  A  L + +     + D+  +  L+DGLCKS RL  A E
Sbjct: 608 FPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKE 667

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKR 487
           +F++L   G   NV  YT MI  LC  G  ++A DL   ME+K   C+            
Sbjct: 668 IFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDK--GCM------------ 713

Query: 488 YVKPDEITVS-ILEELLNKDEN 508
              PD +T   I+  L  KDEN
Sbjct: 714 ---PDAVTFDIIIWALFEKDEN 732



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 119/451 (26%), Positives = 211/451 (46%), Gaps = 36/451 (7%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L DA   ++ MI    +P + ++N+L+       +      L   +    + PD  + N 
Sbjct: 219 LGDACDLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNT 278

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++   K   +  A + L  +++    PDVVT   LI G     K   A  +F       
Sbjct: 279 LIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMA--- 335

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            +  V PNV  Y ++IDGLCK+  V++   LF +MK + + PD   Y SLI   C   + 
Sbjct: 336 -QSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHL 394

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           E A    +   ++ E+ +           PDV SY  ++++LCK   ++ AKE F  +  
Sbjct: 395 ERA---IALCKKMKEQGI----------QPDVYSYTILLDALCKGGRLENAKEFFQRLLV 441

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           +G   +V  Y+ +I+G C      +A  L   +E +GC+PD  ++ T+I +  + ++ ++
Sbjct: 442 KGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDK 501

Query: 368 ALSLYGEMISMGVRPDNSCILEAAEL-FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           A  +  EMI+ G++      L+ A++    +     + D+  +  L+DG      L+ A 
Sbjct: 502 AEKILREMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAK 561

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-----------IRECL 475
            +F  + + G  PNV  YT+MI GLC +  +++A  L  +M+ K           + + L
Sbjct: 562 YVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDAL 621

Query: 476 -------KAIELLHKMAKRYVKPDEITVSIL 499
                  +AI LL +M +  ++PD  + +IL
Sbjct: 622 CKNHHLERAIALLKEMKEHGIQPDVYSYTIL 652



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/430 (25%), Positives = 194/430 (45%), Gaps = 39/430 (9%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++ +A   F  M     TP + ++ +++  L  +K     + L E +    ++PD V+  
Sbjct: 323 KVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYT 382

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++  CK   +  A     ++  +   PDV +   L+  LC  G+   A   F + +  
Sbjct: 383 SLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLV- 441

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                   NV  Y  +I+GLCK     +   L   M+G+G  PDA  + ++I    CA+ 
Sbjct: 442 ---KGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTII----CALF 494

Query: 247 WEDAKGNTSAALELHEEFVNGNGE------------LGVICH----PDVLSYCSIINSLC 290
            +D   N  A   L E    G  E            L V+      PDV++Y ++++   
Sbjct: 495 EKDE--NDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYF 552

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
               +  AK +F  M   G+ P+V  Y+ +IDG C    +D+A  LF  ++ +   P+  
Sbjct: 553 LVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIV 612

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------NSCILEAA-ELFRTL 397
           +Y +LI++  K   +E A++L  EM   G++PD             S  LE A E+F+ L
Sbjct: 613 TYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRL 672

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
               + L++ V+  +++ LCK+     A +L  K+   G  P+ VT+ ++I  L  +   
Sbjct: 673 LVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGCMPDAVTFDIIIWALFEKDEN 732

Query: 458 EKAYDLLPDM 467
           +KA  +L +M
Sbjct: 733 DKAEKILXEM 742



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 127/247 (51%), Gaps = 17/247 (6%)

Query: 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
           + + + +A + L  + +    PDVVT G L+ G  +  +   A  +F           V 
Sbjct: 518 RKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQM----GVT 573

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           PNV CY  +IDGLCK   V++   LF +MK + ++P+   Y SLI   C   + E     
Sbjct: 574 PNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLE----- 628

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
              A+ L +E      E G+   PDV SY  +++ LCK   ++ AKE+F  +  +G   +
Sbjct: 629 --RAIALLKEM----KEHGI--QPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLN 680

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           V VY+++I+  C  G  D+A  L   +E +GC+PD  +++ +I +  + ++ ++A  +  
Sbjct: 681 VQVYTAMINELCKAGLFDEALDLQXKMEDKGCMPDAVTFDIIIWALFEKDENDKAEKILX 740

Query: 374 EMISMGV 380
           EMI+ G+
Sbjct: 741 EMIARGL 747



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 156/370 (42%), Gaps = 61/370 (16%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  +++A+  F  M +    P + ++ SL+  L    +    I L +++   G+ PD  S
Sbjct: 356 EKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYS 415

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
             IL++  CK   + +A     R+L K +  +V T   +I GLC    F EA  L +K  
Sbjct: 416 YTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKME 475

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG------------------ 226
              C    +P+ I + +II  L +    +K   +  +M  RG                  
Sbjct: 476 GKGC----MPDAITFKTIICALFEKDENDKAEKILREMIARGLQEARKVRLKEAKIVLAV 531

Query: 227 -----IYPDAFVYNSL----------------------------IRVYCCAVNWEDAKGN 253
                I PD   Y +L                            ++ Y   ++    K  
Sbjct: 532 MTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKT 591

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
              A+ L EE  + N        P++++Y S+I++LCK+  +++A  L  +MK  GI PD
Sbjct: 592 VDEAMSLFEEMKHKN------MFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPD 645

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           V  Y+ L+DG C  GR++ A+++F  +  +G   +   Y  +IN   K    +EAL L  
Sbjct: 646 VYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQX 705

Query: 374 EMISMGVRPD 383
           +M   G  PD
Sbjct: 706 KMEDKGCMPD 715



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 104/230 (45%), Gaps = 19/230 (8%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V+   LM+ +  +  +  A      + +   +P+V     +I GLC +    EA  L
Sbjct: 539 PDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSL 598

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F +        N+ PN++ Y S+ID LCK+  + +   L  +MK  GI PD + Y  L+ 
Sbjct: 599 FEEMK----HKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLD 654

Query: 240 VYCCAVNWEDAKGNTSAALELHEEF-VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
             C +   E AK       E+ +   V G        H +V  Y ++IN LCK  L D+A
Sbjct: 655 GLCKSGRLEGAK-------EIFQRLLVKGY-------HLNVQVYTAMINELCKAGLFDEA 700

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
            +L   M+ +G +PD V +  +I         D A K+   + + G + +
Sbjct: 701 LDLQXKMEDKGCMPDAVTFDIIIWALFEKDENDKAEKILXEMIARGLMKE 750


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/479 (28%), Positives = 230/479 (48%), Gaps = 80/479 (16%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLS--ERLNTIGLLPDF 122
           +++L+DA+  F  M+  +P P +  FN LL A+A  K +   I L+   ++  +G  P  
Sbjct: 20  DLKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLALLGKMMKLGYEPSI 79

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           V+L+ L+N +C    +SDA   + +++   + PD +T   LI GL +  K +EA  L  +
Sbjct: 80  VTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDR 139

Query: 183 FVAFDCRPNVI-------------------------------PNVICYASIIDGLCKDGF 211
            V   C+PN++                                +V+ + +IID LCK   
Sbjct: 140 MVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRH 199

Query: 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA--------------------- 250
           V+    LF +M+ +GI P+   Y+SLI   C    W DA                     
Sbjct: 200 VDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNA 259

Query: 251 -------KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                  +G    A +LH++ +  +        PD+ +Y S+IN  C    +DKAK++F 
Sbjct: 260 LIDAFVKEGKFVEAEKLHDDMIKRS------IDPDIFTYNSLINGFCMHDRLDKAKQMFE 313

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            M S+   PD+  Y++LI G+C   R++D  +LF  +   G + DT +Y TLI       
Sbjct: 314 FMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDG 373

Query: 364 KVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFN 410
             + A  ++ +M+S GV PD             N  + +A E+F  +  ++ +LD+ ++ 
Sbjct: 374 DCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYT 433

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
            +++G+CK+ ++   W+LF  L   G +PNVVTY  MI GLC +  +++AY LL  M+E
Sbjct: 434 TMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKE 492



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 190/393 (48%), Gaps = 45/393 (11%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G+++L  A    N M   +    +  FN+++ +L   ++  + + L + + T G+ P+
Sbjct: 161 KRGDIDL--AFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPN 218

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+ + L++C C     SDA   L  ++ K  +P++VT   LI     +GKF EA  L  
Sbjct: 219 VVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHD 278

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
             +    + ++ P++  Y S+I+G C    ++K + +F  M  +  +PD   YN+LI+ +
Sbjct: 279 DMI----KRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGF 334

Query: 242 CCAVNWEDAK------------GNTSAALELHEE-FVNGNGE---------LGVICHPDV 279
           C +   ED              G+T     L +  F +G+ +         +     PD+
Sbjct: 335 CKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDI 394

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           ++Y  +++ LC +  ++KA E+F  M+   I  D+ +Y+++I+G C  G++DD   LF S
Sbjct: 395 MTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCS 454

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCI-------- 387
           +  +G  P+  +YNT+I+       ++EA +L  +M   G  PD    N+ I        
Sbjct: 455 LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGD 514

Query: 388 -LEAAELFRTLHNTKFELDLT----VFNCLVDG 415
              +AEL R + + +F  D +    V N L DG
Sbjct: 515 KAASAELIREMRSCRFVGDASTIGLVANMLHDG 547



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 98/231 (42%), Gaps = 41/231 (17%)

Query: 288 SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID--DARKLFVSIESEGC 345
           S  KD+ +D A  LF  M     +P +  ++ L+     M + D   +  L   +   G 
Sbjct: 16  SWGKDLKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLALLGKMMKLGY 75

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELD 405
            P   + ++L+N Y   +++ +A++L  +M+ MG RPD                      
Sbjct: 76  EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDT--------------------- 114

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
              F  L+ GL    +   A  L  ++ + G +PN+VTY V++ GLC  G I+ A++LL 
Sbjct: 115 -ITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLL- 172

Query: 466 DMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                           +KM    ++ D +  + + + L K  +  + +NL 
Sbjct: 173 ----------------NKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLF 207


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 142/477 (29%), Positives = 234/477 (49%), Gaps = 57/477 (11%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           AL  F  +  +   P + +FN+LL  L  +      + L  ++      P+ V+   LMN
Sbjct: 133 ALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMN 192

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
             C+   + +A   L R++     P  +T G ++ G+C +G    A  L  K        
Sbjct: 193 GLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEV---S 249

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
           ++IPNV+ Y++IID LCKDG  +  + LF +M+ +GI+PD F YNS+I  +C +  W DA
Sbjct: 250 HIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDA 309

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
           +      LE                 PDV++Y ++IN+  K+    +A+EL+ +M  RGI
Sbjct: 310 EQLLQEMLERK-------------ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGI 356

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
           IP+ + YSS+IDG+C   R+D A  +F  + ++GC P+  ++NTLI+ Y   +++++ + 
Sbjct: 357 IPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGME 416

Query: 371 LYGEMISMGVRPDNSCI------------LEAA-ELFRTLHNTKFELDLTVFNCLVDGLC 417
           L  EM   G+  D +              L AA +L + + ++    D+   + L+DGLC
Sbjct: 417 LLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLC 476

Query: 418 KSWRLRSAWELFKKL-----------PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
            + +L+ A E+FK +           P  G EP+V TY ++I GL  EG           
Sbjct: 477 DNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEG----------- 525

Query: 467 MEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
                 + L+A EL  +M  R + PD IT S + + L K     E   +  S  S++
Sbjct: 526 ------KFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKS 576



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 139/286 (48%), Gaps = 28/286 (9%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           + T G  P+ ++ N L++ +C    + D    L  +       D  T   LI G  + G 
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGD 445

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG-------- 224
              A  L  + ++      + P+++   +++DGLC +G +     +F  M+         
Sbjct: 446 LNAALDLLQEMIS----SGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDAS 501

Query: 225 ---RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
               G+ PD   YN LI      +N    +G    A EL+EE  +     G++  PD ++
Sbjct: 502 HPFNGVEPDVQTYNILISGL---IN----EGKFLEAEELYEEMPH----RGIV--PDTIT 548

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y S+I+ LCK   +D+A ++F  M S+   P+VV +++LI+GYC  GR+DD  +LF  + 
Sbjct: 549 YSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMG 608

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
             G + +  +Y TLI  + K+  +  AL ++ EMIS GV PD   I
Sbjct: 609 RRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITI 654



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 144/311 (46%), Gaps = 20/311 (6%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+ A   F  M     +P + +FN+L+    G K   + + L   +   GL+ D  + N 
Sbjct: 376 LDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNT 435

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF-----TK 182
           L++ F  +  ++ A   L  ++     PD+VT   L+ GLC  GK  +A  +F     +K
Sbjct: 436 LIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSK 495

Query: 183 FVAFDCRP--NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
                  P   V P+V  Y  +I GL  +G   +   L+ +M  RGI PD   Y+S+I  
Sbjct: 496 KDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDG 555

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
            C     ++A            +  +  G       P+V+++ ++IN  CK   VD   E
Sbjct: 556 LCKQSRLDEAT-----------QMFDSMGSKSF--SPNVVTFTTLINGYCKAGRVDDGLE 602

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           LF +M  RGI+ + + Y +LI G+  +G I+ A  +F  + S G  PDT +   ++    
Sbjct: 603 LFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLW 662

Query: 361 KIEKVEEALSL 371
             E+++ A+++
Sbjct: 663 SKEELKRAVAM 673



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 97/229 (42%), Gaps = 32/229 (13%)

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           L  G+  +  ++DA  LF  +     +P    +  L+    ++E+ +  +SLY +M    
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 380 VRPD-------NSCILEAAEL------FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           +R D         C    ++L      F  L       D+  FN L+ GLC   R+  A 
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEAL 169

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE----------------- 469
            LF ++      PNVVT+T ++ GLC EG I +A  LL  M E                 
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 470 -KIRECLKAIELLHKMAK-RYVKPDEITVSILEELLNKDENCHECMNLL 516
            K  + + A+ LL KM +  ++ P+ +  S + + L KD    +  NL 
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLF 278


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 132/423 (31%), Positives = 215/423 (50%), Gaps = 40/423 (9%)

Query: 66  VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
           ++ N+AL  F  M+H +P P +  F  LL  +A  K +   I L E++  +G+ P   + 
Sbjct: 61  LQFNEALDLFTRMVHSRPLPSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTC 120

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           NI+MNC C+      A   LG++++  F PD+VT   L+ G C   +  +A  LF + V 
Sbjct: 121 NIVMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVG 180

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
              RPNV+     Y ++I  LCK+  +N    +F  M   GI P+   YNSL+   C   
Sbjct: 181 MGFRPNVVT----YTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIG 236

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
            W D      AA  L +    G         P+V+++ ++I++  K   + +AKEL+  M
Sbjct: 237 RWSD------AAWLLRDMMKRG-------IQPNVITFTALIDAFVKVGKIMEAKELYKVM 283

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
               + PDV  Y++LI+G C  GR+D+AR++F  +ES G  P+  +Y TLI+ + K ++V
Sbjct: 284 IQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRV 343

Query: 366 EEALSLYGEMISMGV------------------RPDNSCILEAAELFRTLHNTKFELDLT 407
           E+   ++ EM   G+                  RPD      A E+F  + + +   D+ 
Sbjct: 344 EDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPD-----VAQEVFNQMGSRRAPPDIR 398

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            +N L+DGLC +  +  A  +FK + +   + N+VTYT++I G+C  G +E A+DL   +
Sbjct: 399 TYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSL 458

Query: 468 EEK 470
             K
Sbjct: 459 FSK 461



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 170/343 (49%), Gaps = 30/343 (8%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            + DAL  F+ ++ M   P + ++ +L+  L   ++  + + +  ++   G+ P+ V+ N
Sbjct: 167 RIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYN 226

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++  C++   SDA   L  ++++   P+V+T   LI      GK  EA  L+   +  
Sbjct: 227 SLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQM 286

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
               +V P+V  Y ++I+GLC  G +++ R +F  M+  G YP+   Y +LI  +C +  
Sbjct: 287 ----SVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKR 342

Query: 247 WEDA---------KGNTSAAL---------------ELHEEFVNGNGELGVICHPDVLSY 282
            ED          KG  +  +               ++ +E  N  G       PD+ +Y
Sbjct: 343 VEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRA--PPDIRTY 400

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
             +++ LC +  V+KA  +F  M+ R +  ++V Y+ +I G C +G+++DA  LF S+ S
Sbjct: 401 NVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFS 460

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
           +G  P+  +Y T+I+ + +   + EA +L+ +M   G  P+ S
Sbjct: 461 KGMKPNVITYTTMISGFCRRGFIHEADALFKKMKEDGFLPNES 503



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 106/250 (42%), Gaps = 31/250 (12%)

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
           +Y  I+ +   ++  ++A +LF  M     +P +V ++ L+     M R D    LF  +
Sbjct: 49  NYRKILRNGLHNLQFNEALDLFTRMVHSRPLPSIVDFTRLLSVIAKMKRFDVVISLFEQM 108

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---------NSC----I 387
           +  G  P   + N ++N   +  +   A    G+M+ +G  PD           C    I
Sbjct: 109 QILGISPVLYTCNIVMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRI 168

Query: 388 LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
            +A  LF  +    F  ++  +  L+  LCK+  L  A E+F ++   G  PNVVTY  +
Sbjct: 169 EDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSL 228

Query: 448 ICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYV 489
           + GLC  G    A  LL DM +                  K+ + ++A EL   M +  V
Sbjct: 229 VSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSV 288

Query: 490 KPDEITVSIL 499
            PD  T + L
Sbjct: 289 YPDVFTYTAL 298


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 148/494 (29%), Positives = 225/494 (45%), Gaps = 118/494 (23%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
            +DAL +FN M+HM P P +  FN LL AL   K+Y + + +  ++   G+     +L I
Sbjct: 85  FDDALAYFNQMVHMNPFPCITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVSCSVYTLTI 144

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA----------- 176
           L+NC C +  V   F  LG+I +  F P ++T   LI GLC++G+  EA           
Sbjct: 145 LINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRG 204

Query: 177 ------------SGL------------FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFV 212
                       +GL              K V  DC P V+     Y+ IID LCK+  V
Sbjct: 205 YQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVS----YSIIIDSLCKNRLV 260

Query: 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE--------F 264
           N+   LF  M+  GI P    YNSLI   C +  W+ A       LE + +         
Sbjct: 261 NEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSIL 320

Query: 265 VNGNGELGVIC--------------HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
           V+   + GV+                PD+++Y S+I+ +CK  L  ++  L  +M SR I
Sbjct: 321 VDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNI 380

Query: 311 IPD-----------------------------------VVVYSSLIDGYCLMGRIDDARK 335
            PD                                   VV Y+SL+DGYCL  ++D+ARK
Sbjct: 381 RPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARK 440

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395
           +F  + ++GC PD  SYN LI  Y K E+++EA  L+ EM   G+ P++           
Sbjct: 441 VFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNS----------- 489

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
             H T           L+ GLC++ R  +A ELFKK+  +G  P+++TY+ ++ G C  G
Sbjct: 490 ITHTT-----------LISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHG 538

Query: 456 GIEKAYDLLPDMEE 469
            +++A  L   +++
Sbjct: 539 HLDEALALFEALKK 552



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 190/374 (50%), Gaps = 39/374 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +N+A+  F +M  +  +P + ++NSL+  +     +     L + +    + PD V+ +I
Sbjct: 260 VNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSI 319

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++  CK   V +A    G++++    PD+VT   LI G+C    + E+S L  + ++ +
Sbjct: 320 LVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRN 379

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            RP+V+     ++  +D  CK G V++ + +   M  RG+ P+   YNSL+  YC     
Sbjct: 380 IRPDVVT----FSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQM 435

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           ++A+       ++ +  VN        C PDVLSY  +I   CK   +D+AK+LF +M  
Sbjct: 436 DEAR-------KVFDIMVNKG------CAPDVLSYNILIKGYCKSERIDEAKQLFDEMSH 482

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           +G+ P+ + +++LI G C  GR   A++LF  + S GC PD  +Y+TL++ + K   ++E
Sbjct: 483 KGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDE 542

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           AL+L+  +    ++P++                       +   L+ G+CK+ +L  A E
Sbjct: 543 ALALFEALKKSQLKPNH----------------------VICKILLGGMCKAGKLEDAKE 580

Query: 428 LFKKLPRYGPEPNV 441
           LF  L     +P+V
Sbjct: 581 LFSSLSIEELQPDV 594



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 121/266 (45%), Gaps = 32/266 (12%)

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
            GV C   V +   +IN LC   LV     +   +   G  P ++ +++LI+G C+ GRI
Sbjct: 133 FGVSC--SVYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRI 190

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------- 383
            +A +    I S G  P   ++  ++N   KI K   A+    +M+ +   P+       
Sbjct: 191 VEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSII 250

Query: 384 ------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
                 N  + EA +LF  + +      +  +N L+ G+C S + + A  LFK++  +  
Sbjct: 251 IDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNM 310

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVS 497
           +P+VVT+++++  LC EG +                 L+A+ +  KM +  ++PD +T S
Sbjct: 311 KPDVVTFSILVDALCKEGVV-----------------LEALSVFGKMIQIAMEPDIVTYS 353

Query: 498 ILEELLNKDENCHECMNLLPSFLSRN 523
            L   + K     E   LL   LSRN
Sbjct: 354 SLIHGVCKSSLWKESSTLLNEMLSRN 379


>gi|356519375|ref|XP_003528348.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 589

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 165/576 (28%), Positives = 256/576 (44%), Gaps = 103/576 (17%)

Query: 37  SSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGA 96
           +S H  S S    + + L  +  + KS E     AL FF+ M+ M P P    F  L G 
Sbjct: 26  NSTHFRSSSNFTNRAQFLDSM-RDLKSEEA----ALSFFHKMVVMNPLPREKDFTKLFGI 80

Query: 97  LAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPD 156
           +   K+Y   I L + + ++G+ PD  +L I++NC C +      F  LG + +    P 
Sbjct: 81  IVKMKHYATTISLIKHIYSLGIKPDVYTLTIIINCLCHLNHTVFGFSVLGVMFKIGVDPT 140

Query: 157 VVTLGCLIRGLCMQGKFTEA--------------------------------SGLFTKFV 184
           VVT   LI GLC +G    A                                SG      
Sbjct: 141 VVTFATLINGLCAEGNVARAARFADSLEDMGHQSNSYTYGAIINGLCKAGDTSGAILYLE 200

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
               R   +  VI Y++I+D LCKDG V +   LF  M  +GI PD   YNSLI   C  
Sbjct: 201 KIKGRNCDLDVVIAYSTIMDSLCKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNF 260

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
             W++A              +      G++  P+V ++  ++++ CKD ++ +AK +   
Sbjct: 261 GRWKEAT-----------TLLGNMMRKGIM--PNVQTFNVLVDNFCKDGMISRAKTIMGF 307

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M   G+ PDVV Y+S+I G+CL+ ++ DA K+F  +  +G +P+  +Y++LI+ + K + 
Sbjct: 308 MVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGFLPNLVTYSSLIHGWCKTKN 367

Query: 365 VEEALSLYGEMISMGVRPD------------------------------------NSCIL 388
           + +AL L GEM++ G+ PD                                     +C +
Sbjct: 368 INKALFLLGEMVNSGLNPDVVTWSTLIGGFCKAGKPEAAKELFCTMHEHDQHPNLQTCAI 427

Query: 389 ------------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
                       EA  LFR +     EL++ ++N ++DG+C   +L  A ELF  LP  G
Sbjct: 428 ILDGLFKCQFHSEAISLFREMEKMNLELNVVIYNIVLDGMCSFGKLNDAQELFSCLPSKG 487

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITV 496
            + +VV YT MI GLC EG ++ A +LL  MEE    CL      +   +  ++  +I+ 
Sbjct: 488 IKIDVVAYTTMIKGLCKEGLLDDAENLLMKMEE--NGCLPNEFTYNVFVRGLLQRYDISR 545

Query: 497 SILEELLNKDENCHE---CMNLLPSFLSRNQEESKL 529
           S    LL K +          LL S+ S N+E S L
Sbjct: 546 STKYLLLMKGKGLSADATTTELLISYFSANKENSAL 581


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 142/477 (29%), Positives = 234/477 (49%), Gaps = 57/477 (11%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           AL  F  +  +   P + +FN+LL  L  +      + L  ++      P+ V+   LMN
Sbjct: 133 ALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMN 192

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
             C+   + +A   L R++     P  +T G ++ G+C +G    A  L  K        
Sbjct: 193 GLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEV---S 249

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
           ++IPNV+ Y++IID LCKDG  +  + LF +M+ +GI+PD F YNS+I  +C +  W DA
Sbjct: 250 HIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDA 309

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
           +      LE                 PDV++Y ++IN+  K+    +A+EL+ +M  RGI
Sbjct: 310 EQLLQEMLERK-------------ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGI 356

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
           IP+ + YSS+IDG+C   R+D A  +F  + ++GC P+  ++NTLI+ Y   +++++ + 
Sbjct: 357 IPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGME 416

Query: 371 LYGEMISMGVRPDNSCI------------LEAA-ELFRTLHNTKFELDLTVFNCLVDGLC 417
           L  EM   G+  D +              L AA +L + + ++    D+   + L+DGLC
Sbjct: 417 LLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLC 476

Query: 418 KSWRLRSAWELFKKL-----------PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
            + +L+ A E+FK +           P  G EP+V TY ++I GL  EG           
Sbjct: 477 DNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEG----------- 525

Query: 467 MEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
                 + L+A EL  +M  R + PD IT S + + L K     E   +  S  S++
Sbjct: 526 ------KFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKS 576



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 139/286 (48%), Gaps = 28/286 (9%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           + T G  P+ ++ N L++ +C    + D    L  +       D  T   LI G  + G 
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGD 445

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG-------- 224
              A  L  + ++      + P+++   +++DGLC +G +     +F  M+         
Sbjct: 446 LNAALDLLQEMIS----SGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDAS 501

Query: 225 ---RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
               G+ PD   YN LI      +N    +G    A EL+EE  +     G++  PD ++
Sbjct: 502 HPFNGVEPDVQTYNILISGL---IN----EGKFLEAEELYEEMPH----RGIV--PDTIT 548

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y S+I+ LCK   +D+A ++F  M S+   P+VV +++LI+GYC  GR+DD  +LF  + 
Sbjct: 549 YSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMG 608

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
             G + +  +Y TLI  + K+  +  AL ++ EMIS GV PD   I
Sbjct: 609 RRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITI 654



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 144/311 (46%), Gaps = 20/311 (6%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+ A   F  M     +P + +FN+L+    G K   + + L   +   GL+ D  + N 
Sbjct: 376 LDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNT 435

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF-----TK 182
           L++ F  +  ++ A   L  ++     PD+VT   L+ GLC  GK  +A  +F     +K
Sbjct: 436 LIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSK 495

Query: 183 FVAFDCRP--NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
                  P   V P+V  Y  +I GL  +G   +   L+ +M  RGI PD   Y+S+I  
Sbjct: 496 KDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDG 555

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
            C     ++A            +  +  G       P+V+++ ++IN  CK   VD   E
Sbjct: 556 LCKQSRLDEAT-----------QMFDSMGSKSF--SPNVVTFTTLINGYCKAGRVDDGLE 602

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           LF +M  RGI+ + + Y +LI G+  +G I+ A  +F  + S G  PDT +   ++    
Sbjct: 603 LFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLW 662

Query: 361 KIEKVEEALSL 371
             E+++ A+++
Sbjct: 663 SKEELKRAVAM 673



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 97/229 (42%), Gaps = 32/229 (13%)

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           L  G+  +  ++DA  LF  +     +P    +  L+    ++E+ +  +SLY +M    
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 380 VRPD-------NSCILEAAEL------FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           +R D         C    ++L      F  +       D+  FN L+ GLC   R+  A 
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEAL 169

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE----------------- 469
            LF ++      PNVVT+T ++ GLC EG I +A  LL  M E                 
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 470 -KIRECLKAIELLHKMAK-RYVKPDEITVSILEELLNKDENCHECMNLL 516
            K  + + A+ LL KM +  ++ P+ +  S + + L KD    +  NL 
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLF 278


>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g22470, mitochondrial-like [Glycine max]
          Length = 468

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 147/476 (30%), Positives = 235/476 (49%), Gaps = 77/476 (16%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           M+ ++ T  +  FN +LG+L   KYY+  I LS++++  G+  + V+L+IL+NCFC +  
Sbjct: 1   MLLVRHTSPIIEFNKILGSLVKLKYYLTVISLSKQMDVKGIEQNLVTLSILINCFCHLGQ 60

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI---- 193
           ++ +F  LG+IL+  + P+ +T   L++GLC++G+  +      K VA   + N +    
Sbjct: 61  MAFSFSLLGKILKLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQVSYGT 120

Query: 194 ---------------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
                                      PNV+ Y++IIDGLCKD  VN+   L+ +M  R 
Sbjct: 121 LLNGLCKTGETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDARE 180

Query: 227 IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII 286
           I+P+   YN+LI  +C A       G    A  L  E +  N       +PDV ++  +I
Sbjct: 181 IFPNVITYNTLICAFCLA-------GQLMGAFSLLHEMILKN------INPDVYTFSILI 227

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           ++LCK+     AK++F  M   G+ P+V  Y+ +I+G C   R+D+A  L   +  +  +
Sbjct: 228 DALCKE--GKNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMV 285

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAEL 393
           PDT +YN+LI+   K  ++  AL+L  EM   G   D             N  + +A  L
Sbjct: 286 PDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATAL 345

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
           F  +     +  +  +  L+DGLCK  RL++A ELF+ L   G   +V TYTVMI GLC 
Sbjct: 346 FMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCK 405

Query: 454 EGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVS-ILEELLNKDEN 508
           EG  ++A  +   ME+    C+               P+ +T   I+  L  KDEN
Sbjct: 406 EGMFDEALAIKSKMED--NGCI---------------PNAVTFEIIIRSLFEKDEN 444



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 130/294 (44%), Gaps = 46/294 (15%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           + P+ ++ N L+  FC    +  AF  L  ++ K  +PDV T   LI  LC +GK   A 
Sbjct: 181 IFPNVITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEGK--NAK 238

Query: 178 GLFTKFVAFDCRPNV-------------------------------IPNVICYASIIDGL 206
            +F   V     PNV                               +P+ + Y S+IDGL
Sbjct: 239 QIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGL 298

Query: 207 CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266
           CK G +     L  +M  RG   D   Y SL+   C   N + A   T+  +++ E  + 
Sbjct: 299 CKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKA---TALFMKMKERGI- 354

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
                     P + +Y ++I+ LCK   +  A+ELF  +  +G   DV  Y+ +I G C 
Sbjct: 355 ---------QPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCK 405

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
            G  D+A  +   +E  GCIP+  ++  +I S  + ++ ++A  L  EMI+ G+
Sbjct: 406 EGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL 459



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 130/281 (46%), Gaps = 25/281 (8%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIGLLPDFVS 124
           +L  A    + MI     P + +F+ L+ AL   GK     F  + +    +G+ P+  S
Sbjct: 200 QLMGAFSLLHEMILKNINPDVYTFSILIDALCKEGKNAKQIFHAMVQ----MGVNPNVYS 255

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            NI++N  CK   V +A   L  +L K   PD VT   LI GLC  G+ T A  L  + +
Sbjct: 256 YNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNE-M 314

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
               +P    +V+ Y S++D LCK+  ++K   LF+ MK RGI P  + Y +LI   C  
Sbjct: 315 HHRGQP---ADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLC-- 369

Query: 245 VNWEDAKGNTSAALELHEEF-VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                  G    A EL +   V G       C  DV +Y  +I+ LCK+ + D+A  +  
Sbjct: 370 -----KGGRLKNAQELFQHLLVKG-------CCIDVWTYTVMISGLCKEGMFDEALAIKS 417

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
            M+  G IP+ V +  +I         D A KL   + ++G
Sbjct: 418 KMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKG 458



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 126/281 (44%), Gaps = 29/281 (10%)

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
           ++ +  I+ SL K         L   M  +GI  ++V  S LI+ +C +G++  +  L  
Sbjct: 10  IIEFNKILGSLVKLKYYLTVISLSKQMDVKGIEQNLVTLSILINCFCHLGQMAFSFSLLG 69

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---SCILE------ 389
            I   G  P+T ++ TL+       +V++ L  + ++++   + +      +L       
Sbjct: 70  KILKLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQVSYGTLLNGLCKTG 129

Query: 390 ----AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
               A +L R + +     ++ +++ ++DGLCK   +  A++L+ ++      PNV+TY 
Sbjct: 130 ETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYN 189

Query: 446 VMICGLCIEGGIEKAYDLLPDMEEK----------------IRECLKAIELLHKMAKRYV 489
            +IC  C+ G +  A+ LL +M  K                 +E   A ++ H M +  V
Sbjct: 190 TLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEGKNAKQIFHAMVQMGV 249

Query: 490 KPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
            P+  + +I+   L K +   E MNLL   L +N     +T
Sbjct: 250 NPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVT 290



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 113/252 (44%), Gaps = 25/252 (9%)

Query: 68  LNDALC--------FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           L DALC         F+ M+ M   P + S+N ++  L   K     + L   +    ++
Sbjct: 226 LIDALCKEGKNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMV 285

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V+ N L++  CK   ++ A   +  +  +    DVVT   L+  LC      +A+ L
Sbjct: 286 PDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATAL 345

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F K         + P +  Y ++IDGLCK G +   + LF  +  +G   D + Y  +I 
Sbjct: 346 FMKMK----ERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMIS 401

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C        +G    AL +  + +  NG     C P+ +++  II SL +    DKA+
Sbjct: 402 GLC-------KEGMFDEALAIKSK-MEDNG-----CIPNAVTFEIIIRSLFEKDENDKAE 448

Query: 300 ELFLDMKSRGII 311
           +L  +M ++G++
Sbjct: 449 KLLHEMIAKGLL 460


>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 152/487 (31%), Positives = 235/487 (48%), Gaps = 92/487 (18%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++DAL  F+ M+ M+ TP +  FN +L + A  K+Y   + LS RL    + PDF +LNI
Sbjct: 44  VDDALFQFHRMLCMRHTPPIIQFNKILDSFAKMKHYPTVVSLSRRLELKAIQPDFFTLNI 103

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+NCFC +  ++ AF  L +IL+  + PD VTL  LI+GLC++G+  +A     K +A  
Sbjct: 104 LINCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQG 163

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
            R + +                               PNV+ Y +IID LCK   V++  
Sbjct: 164 FRLDQVSYGTLINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIIDCLCKRKLVSEAC 223

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            LF +M  +GI  +   Y+++I  +C         G  + AL    E V     L  I +
Sbjct: 224 NLFSEMSVKGISANVVTYSAIIHGFCIV-------GKLTEALGFLNEMV-----LKAI-N 270

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PDV  Y +++++L K+  V +AK +   +    + P+V+ Y++LIDGY        A+ +
Sbjct: 271 PDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGY--------AKHV 322

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
           F ++   G  PD  SYN +IN   KI++VEEAL+LY EM    + P+             
Sbjct: 323 FNAVGLMGVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNT------------ 370

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
                       +N L+DGLCKS R+  AW+L  ++   G   NV+TY  +I GLC  G 
Sbjct: 371 ----------VTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQ 420

Query: 457 IEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSI-LEELLNKDENCHECMNL 515
           ++                 KAI L++KM  + ++PD  T++I L  LL K +       L
Sbjct: 421 LD-----------------KAIALINKMKDQGIQPDMYTLNILLHGLLCKGKRLKNAQGL 463

Query: 516 LPSFLSR 522
               L +
Sbjct: 464 FQDLLDK 470



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 156/323 (48%), Gaps = 42/323 (13%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALA--GKKYYVNFICLSERLNTIGLL----- 119
           +L +AL F N M+     P +  +N+L+ AL   GK        + E  N + ++     
Sbjct: 253 KLTEALGFLNEMVLKAINPDVYIYNTLVDALHKEGK--------VKEAKNVLAVIVKTCL 304

Query: 120 -PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
            P+ ++ N L++ + K +     F A+G +     +PDV +   +I  LC   +  EA  
Sbjct: 305 KPNVITYNTLIDGYAKHV-----FNAVGLM---GVTPDVWSYNIMINRLCKIKRVEEALN 356

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           L+ +      + N++PN + Y S+IDGLCK G ++    L  +M  RG + +   YNSLI
Sbjct: 357 LYKEM----HQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVITYNSLI 412

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSL-CKDVLVDK 297
              C         G    A+ L    +N   + G+   PD+ +   +++ L CK   +  
Sbjct: 413 NGLC-------KNGQLDKAIAL----INKMKDQGI--QPDMYTLNILLHGLLCKGKRLKN 459

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A+ LF D+  +G  P+V  Y+ +I G+C  G +D+A  L   +E  GC P+  ++  +I 
Sbjct: 460 AQGLFQDLLDKGYHPNVYTYNIIIYGHCKEGLLDEAYALQSKMEDSGCSPNAITFKIIIC 519

Query: 358 SYSKIEKVEEALSLYGEMISMGV 380
           +  +  + ++A  L  EMI+ G+
Sbjct: 520 ALLEKGETDKAEKLLCEMIARGL 542



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 125/263 (47%), Gaps = 26/263 (9%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + ++N+L+   A  K+  N + L      +G+ PD  S NI++N  CK+  V +A   
Sbjct: 306 PNVITYNTLIDGYA--KHVFNAVGL------MGVTPDVWSYNIMINRLCKIKRVEEALNL 357

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
              + +K   P+ VT   LI GLC  G+ + A  L  +        NVI     Y S+I+
Sbjct: 358 YKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVI----TYNSLIN 413

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR-VYCCAVNWEDAKGNTSAALELHEE 263
           GLCK+G ++K   L   MK +GI PD +  N L+  + C     ++A+G       L ++
Sbjct: 414 GLCKNGQLDKAIALINKMKDQGIQPDMYTLNILLHGLLCKGKRLKNAQG-------LFQD 466

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
            ++         HP+V +Y  II   CK+ L+D+A  L   M+  G  P+ + +  +I  
Sbjct: 467 LLDKG------YHPNVYTYNIIIYGHCKEGLLDEAYALQSKMEDSGCSPNAITFKIIICA 520

Query: 324 YCLMGRIDDARKLFVSIESEGCI 346
               G  D A KL   + + G +
Sbjct: 521 LLEKGETDKAEKLLCEMIARGLL 543


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  219 bits (558), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 141/525 (26%), Positives = 237/525 (45%), Gaps = 127/525 (24%)

Query: 59  ENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGL 118
            N  S  ++++DA+  F  M+  +P P +  FN LL A+A    +   I L E++ T+G+
Sbjct: 55  RNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGI 114

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC---------- 168
             D  + +I +NCFC+   +S A   L ++++  + PD+VTL  L+ G C          
Sbjct: 115 SHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVA 174

Query: 169 -------------------------MQGKFTEASGLFTKFVAFDCRPNVI---------- 193
                                    +  K +EA  L  + V   C+P+++          
Sbjct: 175 LVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLC 234

Query: 194 ---------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
                                 +V+ Y +IIDGLCK   ++    LF +M  +GI PD F
Sbjct: 235 KRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVF 294

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            Y+SLI   C    W DA    S  +E                +P+V+++ ++I++  K+
Sbjct: 295 TYSSLISCLCNYGRWSDASRLLSDMIERK-------------INPNVVTFSALIDAFVKE 341

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             + +A++L+ +M  R I PD+  YSSLI+G+C+  R+D+A+ +F  + S+ C P+  +Y
Sbjct: 342 GKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTY 401

Query: 353 NTLINSYSKIEKVEEALSLYGE-----------------------------------MIS 377
           +TLI  + K ++VEE + L+ E                                   M+S
Sbjct: 402 STLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVS 461

Query: 378 MGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
           +GV P+             N  + +A  +F  L  +  E D+  +N +++G+CK+ ++  
Sbjct: 462 VGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVED 521

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
            WELF  L   G  PNV+ Y  MI G C +G  E+A  LL  M+E
Sbjct: 522 GWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKE 566



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 162/343 (47%), Gaps = 26/343 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            ++DAL  F  M +    P + +++SL+  L     + +   L   +    + P+ V+ +
Sbjct: 273 HMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFS 332

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ F K   + +A      ++++   PD+ T   LI G CM  +  EA  +F   ++ 
Sbjct: 333 ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK 392

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           DC     PNV+ Y+++I G CK   V +   LF +M  RG+  +   Y +LI  +  A +
Sbjct: 393 DC----FPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARD 448

Query: 247 WEDAKG--NTSAALELHEEFVNGNGELGVIC--------------------HPDVLSYCS 284
            ++A+       ++ +H   +  N  L  +C                     PD+ +Y  
Sbjct: 449 CDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNI 508

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           +I  +CK   V+   ELF ++  +G+ P+V+ Y+++I G+C  G  ++A  L   ++ +G
Sbjct: 509 MIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDG 568

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
            +P++ +YNTLI +  +    E +  L  EM S G   D S I
Sbjct: 569 PLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTI 611



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 137/320 (42%), Gaps = 44/320 (13%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           +DA    + MI  +  P + +F++L+ A   +   V    L + +    + PD  + + L
Sbjct: 310 SDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 369

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK------ 182
           +N FC    + +A      ++ K   P+VVT   LI+G C   +  E   LF +      
Sbjct: 370 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGL 429

Query: 183 --------------FVAFDC-----------RPNVIPNVICYASIIDGLCKDGFVNKVRV 217
                         F A DC              V PN++ Y  ++DGLCK+G + K  V
Sbjct: 430 VGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMV 489

Query: 218 LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277
           +F  ++   + PD + YN +I   C A   ED            E F N + + GV   P
Sbjct: 490 VFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDG----------WELFCNLSLK-GV--SP 536

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           +V++Y ++I+  C+    ++A  L   MK  G +P+   Y++LI      G  + + +L 
Sbjct: 537 NVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELI 596

Query: 338 VSIESEGCIPDTSSYNTLIN 357
             + S G   D S+   + N
Sbjct: 597 KEMRSCGFAGDASTIGLVTN 616



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 77/199 (38%), Gaps = 18/199 (9%)

Query: 47  VEEKTKLLKYLSENSKSGEV--------------ELNDALCFFNYMIHMQPTPFMPSFNS 92
           VEE  +L + +S+    G                + ++A   F  M+ +   P + ++N 
Sbjct: 414 VEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNI 473

Query: 93  LLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKV 152
           LL  L         + + E L    + PD  + NI++   CK   V D +     +  K 
Sbjct: 474 LLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKG 533

Query: 153 FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFV 212
            SP+V+    +I G C +G   EA  L  K          +PN   Y ++I    +DG  
Sbjct: 534 VSPNVIAYNTMISGFCRKGSKEEADSLLKKMK----EDGPLPNSGTYNTLIRARLRDGDR 589

Query: 213 NKVRVLFLDMKGRGIYPDA 231
                L  +M+  G   DA
Sbjct: 590 EASAELIKEMRSCGFAGDA 608



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 37/196 (18%)

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN-TKFEL--------- 404
           L N  S I KV++A+ L+G+M+    RP  S I+E  +L   +    KFEL         
Sbjct: 54  LRNRLSDIIKVDDAVDLFGDMVK--SRPFPS-IVEFNKLLSAVAKMNKFELVISLGEQMQ 110

Query: 405 ------DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
                 DL  ++  ++  C+  +L  A  +  K+ + G EP++VT + ++ G C    I 
Sbjct: 111 TLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRIS 170

Query: 459 KAYDLLPDMEEK------------------IRECLKAIELLHKMAKRYVKPDEITVSILE 500
            A  L+  M E                     +  +A+ L+ +M +R  +PD +T   + 
Sbjct: 171 DAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVV 230

Query: 501 ELLNKDENCHECMNLL 516
             L K  +    ++LL
Sbjct: 231 NGLCKRGDIDLALSLL 246


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 139/494 (28%), Positives = 238/494 (48%), Gaps = 95/494 (19%)

Query: 57  LSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           LS N  S E++L+DA+  F  M+  +P P +  F+ LL A+A    +   I L E++  +
Sbjct: 52  LSRNGLS-ELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNL 110

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC-------- 168
           G+  +  + +IL+NCFC+   +  A   LG++++  + P++VTL  L+ G C        
Sbjct: 111 GIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEA 170

Query: 169 ---------------------------MQGKFTEASGLFTKFVAFDCRPNVI-------- 193
                                      +  K +EA  L  + VA  C+P+++        
Sbjct: 171 VALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNG 230

Query: 194 -----------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
                                  P V+ Y +IIDGLCK   ++    LF +M+ +GI P+
Sbjct: 231 LCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPN 290

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
              Y+SLI   C    W DA    S  +E                +PDV ++ ++I++  
Sbjct: 291 VVTYSSLISCLCNYGRWSDASRLLSDMIERK-------------INPDVFTFSALIDAFV 337

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K+  + +A++L+ +M  R I P +V YSSLI+G+C+  R+D+A+++F  + S+ C PD  
Sbjct: 338 KEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVV 397

Query: 351 SYNTLINSYSKIEKVEEALSLYGEM--------------ISMGVRPDNSCILEAAELFRT 396
           +YNTLI  + K ++VEE + ++ EM              +  G+     C + A E+F+ 
Sbjct: 398 TYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDM-AQEIFKE 456

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           + +     ++  +N L+DGLCK+ +L  A  +F+ L R   EP + TY +MI G+C  G 
Sbjct: 457 MVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 516

Query: 457 IEKAYDLLPDMEEK 470
           +E  +DL  ++  K
Sbjct: 517 VEDGWDLFCNLSLK 530



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 172/353 (48%), Gaps = 40/353 (11%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G+ +L  A    N M   +  P +  +N+++  L   K+  + + L + + T G+ P+
Sbjct: 233 KRGDTDL--AFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPN 290

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+ + L++C C     SDA   L  ++ +  +PDV T   LI     +GK  EA  L+ 
Sbjct: 291 VVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYD 350

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           + V    + ++ P+++ Y+S+I+G C    +++ + +F  M  +  +PD   YN+LI+ +
Sbjct: 351 EMV----KRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGF 406

Query: 242 CCAVNWEDA----------------------------KGNTSAALELHEEFVNGNGELGV 273
           C     E+                              G+   A E+ +E V+       
Sbjct: 407 CKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDG----- 461

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
              P++++Y ++++ LCK+  ++KA  +F  ++   + P +  Y+ +I+G C  G+++D 
Sbjct: 462 -VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG 520

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC 386
             LF ++  +G  PD  +YNT+I+ + +    EEA +L+ EM   G  P++ C
Sbjct: 521 WDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGC 573



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 138/303 (45%), Gaps = 37/303 (12%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL----- 119
           E +L +A   ++ M+     P + +++SL          +N  C+ +RL+    +     
Sbjct: 339 EGKLVEAEKLYDEMVKRSIDPSIVTYSSL----------INGFCMHDRLDEAKQMFEFMV 388

Query: 120 -----PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFT 174
                PD V+ N L+  FCK   V +       + ++    + VT   LI+GL   G   
Sbjct: 389 SKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCD 448

Query: 175 EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVY 234
            A  +F + V+      V PN++ Y +++DGLCK+G + K  V+F  ++   + P  + Y
Sbjct: 449 MAQEIFKEMVS----DGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTY 504

Query: 235 NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294
           N +I   C A   ED            + F N + + GV   PDV++Y ++I+  C+   
Sbjct: 505 NIMIEGMCKAGKVEDG----------WDLFCNLSLK-GV--KPDVVAYNTMISGFCRKGS 551

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
            ++A  LF +MK  G +P+   Y++LI      G  + + +L   + S G   D S+   
Sbjct: 552 KEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGL 611

Query: 355 LIN 357
           + N
Sbjct: 612 VTN 614



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 39/222 (17%)

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           +D A  LF +M      P ++ +S L+     M + D    L   +++ G   +  +Y+ 
Sbjct: 62  LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSI 121

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           LIN + +  ++  AL++ G+M+ +G  P+                      +   + L++
Sbjct: 122 LINCFCRRSQLPLALAVLGKMMKLGYEPN----------------------IVTLSSLLN 159

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC 474
           G C S R+  A  L  ++   G +PN VT+  +I GL +                   + 
Sbjct: 160 GYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLH-----------------NKA 202

Query: 475 LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
            +A+ L+ +M  +  +PD +T  ++   L K  +     NLL
Sbjct: 203 SEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLL 244


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  218 bits (556), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 151/502 (30%), Positives = 238/502 (47%), Gaps = 83/502 (16%)

Query: 74  FFNYMIHMQ-PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCF 132
            FN ++H   P P    F  +LG+L   K Y   + LS+++   G+ PDF++ N+LMNCF
Sbjct: 44  LFNRLLHKNNPIPPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCF 103

Query: 133 CKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD----- 187
            ++  +  +F    +IL+K + PD VT   LI+GLC++G+  +A     K VA       
Sbjct: 104 SQLGHIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQ 163

Query: 188 ----------CRPN----------------VIPNVICYASIIDGLCKDGFVNKVRVLFLD 221
                     CR                  V PNV+ Y++IID +CKD  VN    L+ +
Sbjct: 164 VSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCE 223

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
           M  + I PD   Y+SLI  +C         G    A++L    ++ N       +P+V +
Sbjct: 224 MVSKRISPDVVTYSSLISGFCVV-------GKLKYAVDLFNRMISDN------INPNVYT 270

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           +  +I+  CK+  V +AK +   M  + +  DVV Y+SL+DGYCL+ +++ A+ LF  + 
Sbjct: 271 FSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMA 330

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----------------NS 385
             G  PD  SY+ +IN + KI+ V+EA+ L+ EM    + P+                 S
Sbjct: 331 QRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTS 390

Query: 386 CILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
           C   A EL   +H+     ++  +N ++D +CK+  +  A  L  K+   G +P++ TYT
Sbjct: 391 C---ALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYT 447

Query: 446 VMICGLCIEGGIEKAYDLLPDMEEKIRE-------------CLK-----AIELLHKMAKR 487
           V+I GLC  G ++ A  +  D+  K                C K      + +L KM   
Sbjct: 448 VLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDN 507

Query: 488 YVKPDEITVSIL-EELLNKDEN 508
              P+ IT  IL   L  KDEN
Sbjct: 508 GCIPNAITYEILIHSLFEKDEN 529



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 107/341 (31%), Positives = 182/341 (53%), Gaps = 30/341 (8%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGA--LAGK-KYYVNFICLSERLNTIGLLPDFVS 124
           +NDA   +  M+  + +P + +++SL+    + GK KY V+   L  R+ +  + P+  +
Sbjct: 214 VNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVD---LFNRMISDNINPNVYT 270

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            +IL++ FCK   V +A   L  +++K    DVVT   L+ G C+  +  +A  LF    
Sbjct: 271 FSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMA 330

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
               +  V P+V  Y+ +I+G CK   V++   LF +M  + I+P+   YNSL+   C  
Sbjct: 331 ----QRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLC-- 384

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                  G TS ALEL +E ++  G+       ++++Y SI++++CK+  VDKA  L   
Sbjct: 385 -----KSGRTSCALELVDE-MHDRGQ-----PSNIITYNSILDAICKNNHVDKAIVLLTK 433

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           +K +GI PD+  Y+ LI+G C +GR+DDA+K+F  +  +G  P+  +Y +LIN +     
Sbjct: 434 IKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGF 493

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELD 405
            +E L++  +M       DN CI  A   +  L ++ FE D
Sbjct: 494 FDEGLAMLSKM------KDNGCIPNAIT-YEILIHSLFEKD 527



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 105/228 (46%), Gaps = 17/228 (7%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ PD  S +I++N FCK+  V +A      +  K   P+VVT   L+ GLC  G+ + A
Sbjct: 333 GVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCA 392

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L  + +    +P+   N+I Y SI+D +CK+  V+K  VL   +K +GI PD F Y  
Sbjct: 393 LELVDE-MHDRGQPS---NIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTV 448

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI   C     +DA+          +  V G         P++ +Y S+IN  C     D
Sbjct: 449 LINGLCKVGRLDDAQK------VFEDLLVKGYS-------PNIYTYTSLINGFCNKGFFD 495

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           +   +   MK  G IP+ + Y  LI         D A KL   + + G
Sbjct: 496 EGLAMLSKMKDNGCIPNAITYEILIHSLFEKDENDKAEKLLREMIARG 543



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 113/265 (42%), Gaps = 40/265 (15%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P  + +  I+ SL K      A  L   M+  GI PD +  + L++ +  +G I  +  +
Sbjct: 56  PPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSV 115

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
           F  I  +G  PD  ++  LI       +V +AL  + ++++ G                 
Sbjct: 116 FAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQG----------------- 158

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
                F+LD   +  L++GLC+    ++A +L +++      PNVV Y+ +I  +C +  
Sbjct: 159 -----FQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKL 213

Query: 457 IEKAYDLLPDMEEK------------------IRECLKAIELLHKMAKRYVKPDEITVSI 498
           +  A+DL  +M  K                  + +   A++L ++M    + P+  T SI
Sbjct: 214 VNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSI 273

Query: 499 LEELLNKDENCHECMNLLPSFLSRN 523
           L +   K+    E  N+L   + +N
Sbjct: 274 LIDGFCKEGKVREAKNVLAVMMKKN 298


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  218 bits (555), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 142/477 (29%), Positives = 233/477 (48%), Gaps = 57/477 (11%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           AL  F  +  +   P + +FN+LL  L  +      + L  ++      P+ V+   LMN
Sbjct: 133 ALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMN 192

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
             C+   + +A   L R++     P  +T G ++ G+C  G    A  L  K        
Sbjct: 193 GLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEI---S 249

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
           ++IPNV+ Y++IID LCKDG  +  + LF +M+ +GI+PD F YNS+I  +C +  W DA
Sbjct: 250 HIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDA 309

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
           +      LE                 PDV++Y ++IN+  K+    +A+EL+ +M  RGI
Sbjct: 310 EQLLQEMLERK-------------ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGI 356

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
           IP+ + YSS+IDG+C   R+D A  +F  + ++GC P+  ++NTLI+ Y   +++++ + 
Sbjct: 357 IPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGME 416

Query: 371 LYGEMISMGVRPDNSCI------------LEAA-ELFRTLHNTKFELDLTVFNCLVDGLC 417
           L  EM   G+  D +              L AA +L + + ++    D+   + L+DGLC
Sbjct: 417 LLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLC 476

Query: 418 KSWRLRSAWELFKKL-----------PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
            + +L+ A E+FK +           P  G EP+V TY ++I GL  EG           
Sbjct: 477 DNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEG----------- 525

Query: 467 MEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
                 + L+A EL  +M  R + PD IT S + + L K     E   +  S  S++
Sbjct: 526 ------KFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKS 576



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 139/286 (48%), Gaps = 28/286 (9%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           + T G  P+ ++ N L++ +C    + D    L  +       D  T   LI G  + G 
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGD 445

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG-------- 224
              A  L  + ++      + P+++   +++DGLC +G +     +F  M+         
Sbjct: 446 LNAALDLLQEMIS----SGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDAS 501

Query: 225 ---RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
               G+ PD   YN LI      +N    +G    A EL+EE  +     G++  PD ++
Sbjct: 502 HPFNGVEPDVQTYNILISGL---IN----EGKFLEAEELYEEMPH----RGIV--PDTIT 548

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y S+I+ LCK   +D+A ++F  M S+   P+VV +++LI+GYC  GR+DD  +LF  + 
Sbjct: 549 YSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMG 608

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
             G + +  +Y TLI  + K+  +  AL ++ EMIS GV PD   I
Sbjct: 609 RRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITI 654



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 144/311 (46%), Gaps = 20/311 (6%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+ A   F  M     +P + +FN+L+    G K   + + L   +   GL+ D  + N 
Sbjct: 376 LDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNT 435

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF-----TK 182
           L++ F  +  ++ A   L  ++     PD+VT   L+ GLC  GK  +A  +F     +K
Sbjct: 436 LIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSK 495

Query: 183 FVAFDCRP--NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
                  P   V P+V  Y  +I GL  +G   +   L+ +M  RGI PD   Y+S+I  
Sbjct: 496 KDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDG 555

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
            C     ++A            +  +  G       P+V+++ ++IN  CK   VD   E
Sbjct: 556 LCKQSRLDEAT-----------QMFDSMGSKSF--SPNVVTFTTLINGYCKAGRVDDGLE 602

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           LF +M  RGI+ + + Y +LI G+  +G I+ A  +F  + S G  PDT +   ++    
Sbjct: 603 LFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLW 662

Query: 361 KIEKVEEALSL 371
             E+++ A+++
Sbjct: 663 SKEELKRAVAM 673



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 99/229 (43%), Gaps = 32/229 (13%)

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           L  G+  +  ++DA  LF  +     +P    +  L+    ++E+ +  +SLY +M    
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 380 VRPD-------NSCILEAAEL------FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           +R D         C    ++L      F  +       D+  FN L+ GLC   R+  A 
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEAL 169

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE----------------- 469
            LF ++      PNVVT+T ++ GLC EG I +A  LL  M E                 
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 470 -KIRECLKAIELLHKMAK-RYVKPDEITVSILEELLNKDENCHECMNLL 516
            KI + + A++LL KM +  ++ P+ +  S + + L KD    +  NL 
Sbjct: 230 CKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLF 278


>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 591

 Score =  217 bits (553), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 148/520 (28%), Positives = 243/520 (46%), Gaps = 97/520 (18%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+DA   F  M+  +P P + SF+ LL A+   K+Y + + L   ++ + +      L+I
Sbjct: 53  LDDAFSLFRQMVRTKPLPSVASFSKLLKAMVHMKHYSSVVSLFREIHKLRIPVHEFILSI 112

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++N  C M      F  L    +K    + VT   LIRGL  + K  +A  LF K V  +
Sbjct: 113 VVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVREN 172

Query: 188 -CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKV 215
            C PN +                               PN   Y  +ID  CKDG ++  
Sbjct: 173 ICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGA 232

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
             L  +MK + I PD F Y++LI   C    WE+ +        L  E ++ N       
Sbjct: 233 TSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVR-------TLFLEMIHLN------I 279

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
           +P+V ++ S+I+ LCK+  V+ A+E+   M  +G+ PDV+ Y+ +IDGY L G++D AR+
Sbjct: 280 YPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRARE 339

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL------------------------ 371
           +F S+ ++   PD  SYN LIN Y++ +K++EA+ +                        
Sbjct: 340 IFDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLF 399

Query: 372 -----------YGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLT 407
                      + EM+S G  PD             N  + EA   F  L   + + ++ 
Sbjct: 400 ELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQ 459

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           ++  ++DGLCK+ +L  A   F+KLP  G  P+V+TYT MI G C EG +++A D+L  M
Sbjct: 460 IYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKM 519

Query: 468 EEKIRECLKAIELLHKMAKRYVKPDEIT--VSILEELLNK 505
           E+    CL      + + + +++ ++++   + LEE+  K
Sbjct: 520 EDN--GCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGK 557


>gi|356536611|ref|XP_003536830.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 578

 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 156/515 (30%), Positives = 246/515 (47%), Gaps = 85/515 (16%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++DA+  F+ M+ M P P +  F  +LG +A  +YY   I L   +   G++P  V+ NI
Sbjct: 35  IDDAVALFHRMVDMHPLPSIVEFTKILGTIAKMRYYATAIDLYTLMEYKGVVPFTVTFNI 94

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA-- 185
           L+NCFC M  +  AF  +G+IL+    P+VVT   L++G C+  K  +A  ++ + VA  
Sbjct: 95  LINCFCHMGQMDFAFSVMGKILKWGCRPNVVTFTTLMKGFCVNDKMLDALYIYDEMVARR 154

Query: 186 --FD-----------C-------------------RPNVIPNVICYASIIDGLCKDGFVN 213
             FD           C                   R  V PN+I Y +++ GLCKDG +N
Sbjct: 155 IRFDDVLYGTLINGLCKSKIGKPRAAVQLLQKMEERQLVKPNLIMYNTVVHGLCKDGNIN 214

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSA-----ALELHEEFVNGN 268
           + RVL   M  +GI+PD F Y+SLI   C A   ++     +       ++   E  N  
Sbjct: 215 EARVLCSKMIVQGIFPDIFTYSSLIYGLCRAGQRKEVTSLLNGFCLNNKVDEARELFNVM 274

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
            E G     D+++Y  ++N  C +  V +A++LF  M  RG  PD + Y+ L+ GYCL+ 
Sbjct: 275 IERGE--QHDIINYNILMNGYCLNNKVGEARKLFHMMVERGEQPDTITYTILMHGYCLID 332

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL 388
           ++D+AR LF  +   G +PD  SYN LI  Y K E+V EA++L  +M    + P      
Sbjct: 333 KVDEARNLFHGMIERGLVPDVWSYNILIKGYCKFERVGEAMNLLEDMFLKNLVP------ 386

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY--GPEPNVVTYTV 446
                           ++  +N +VDGLCKS  +  AW+L  ++  Y   P P+V TY +
Sbjct: 387 ----------------NIITYNSVVDGLCKSGGILDAWKLVDEM-HYCCQPPPDVTTYNI 429

Query: 447 MICGLCIEGGIEKA-------------------YDLLPDMEEKIRECLKAIELLHKMAKR 487
           ++  LC    +EKA                   Y++L     K R   +AI L + M  +
Sbjct: 430 LLESLCRIECVEKAIAFFKHLIFERSFAPNVWSYNILISGCCKNRRLDEAINLFNHMCFK 489

Query: 488 YVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
            + PD +T +IL + L   +   + + LL   + +
Sbjct: 490 NLVPDIVTYNILLDALFNGQQLDKAIALLVQIVDQ 524



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 179/398 (44%), Gaps = 59/398 (14%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYV----NFICLSERLNTI----- 116
           +N+A    + MI     P + +++SL+  L  AG++  V    N  CL+ +++       
Sbjct: 213 INEARVLCSKMIVQGIFPDIFTYSSLIYGLCRAGQRKEVTSLLNGFCLNNKVDEARELFN 272

Query: 117 -----GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
                G   D ++ NILMN +C    V +A      ++ +   PD +T   L+ G C+  
Sbjct: 273 VMIERGEQHDIINYNILMNGYCLNNKVGEARKLFHMMVERGEQPDTITYTILMHGYCLID 332

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
           K  EA  LF   +       ++P+V  Y  +I G CK   V +   L  DM  + + P+ 
Sbjct: 333 KVDEARNLFHGMI----ERGLVPDVWSYNILIKGYCKFERVGEAMNLLEDMFLKNLVPNI 388

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP--DVLSYCSIINSL 289
             YNS++   C         G    A +L +E       +   C P  DV +Y  ++ SL
Sbjct: 389 ITYNSVVDGLC-------KSGGILDAWKLVDE-------MHYCCQPPPDVTTYNILLESL 434

Query: 290 CKDVLVDKAKELFLDMK-SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           C+   V+KA   F  +   R   P+V  Y+ LI G C   R+D+A  LF  +  +  +PD
Sbjct: 435 CRIECVEKAIAFFKHLIFERSFAPNVWSYNILISGCCKNRRLDEAINLFNHMCFKNLVPD 494

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTV 408
             +YN L+++    +++++A++L  +++  G+ P+                      L  
Sbjct: 495 IVTYNILLDALFNGQQLDKAIALLVQIVDQGISPN----------------------LRT 532

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTV 446
           +N L++GL K  R ++A ++   L   G  P+V TY +
Sbjct: 533 YNILINGLHKGGRPKTAQKISLYLSIRGYHPDVKTYII 570



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 147/343 (42%), Gaps = 34/343 (9%)

Query: 48  EEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFI 107
           +E T LL     N+K     +++A   FN MI       + ++N L+             
Sbjct: 249 KEVTSLLNGFCLNNK-----VDEARELFNVMIERGEQHDIINYNILMNGYCLNNKVGEAR 303

Query: 108 CLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGL 167
            L   +   G  PD ++  ILM+ +C +  V +A      ++ +   PDV +   LI+G 
Sbjct: 304 KLFHMMVERGEQPDTITYTILMHGYCLIDKVDEARNLFHGMIERGLVPDVWSYNILIKGY 363

Query: 168 CMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI 227
           C   +  EA  L           N++PN+I Y S++DGLCK G +     L  +M     
Sbjct: 364 CKFERVGEAMNLLEDMFL----KNLVPNIITYNSVVDGLCKSGGILDAWKLVDEMH---- 415

Query: 228 Y-----PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
           Y     PD   YN L+   C     E A      A   H  F            P+V SY
Sbjct: 416 YCCQPPPDVTTYNILLESLCRIECVEKA-----IAFFKHLIFERSFA-------PNVWSY 463

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
             +I+  CK+  +D+A  LF  M  + ++PD+V Y+ L+D      ++D A  L V I  
Sbjct: 464 NILISGCCKNRRLDEAINLFNHMCFKNLVPDIVTYNILLDALFNGQQLDKAIALLVQIVD 523

Query: 343 EGCIPDTSSYNTLINSYSK--IEKVEEALSLYGEMISMGVRPD 383
           +G  P+  +YN LIN   K    K  + +SLY  +   G  PD
Sbjct: 524 QGISPNLRTYNILINGLHKGGRPKTAQKISLYLSI--RGYHPD 564



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 98/197 (49%), Gaps = 16/197 (8%)

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
            S CK   +D A  LF  M     +P +V ++ ++     M     A  L+  +E +G +
Sbjct: 27  QSTCKFDSIDDAVALFHRMVDMHPLPSIVEFTKILGTIAKMRYYATAIDLYTLMEYKGVV 86

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAEL 393
           P T ++N LIN +  + +++ A S+ G+++  G RP+             N  +L+A  +
Sbjct: 87  PFTVTFNILINCFCHMGQMDFAFSVMGKILKWGCRPNVVTFTTLMKGFCVNDKMLDALYI 146

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKS--WRLRSAWELFKKL-PRYGPEPNVVTYTVMICG 450
           +  +   +   D  ++  L++GLCKS   + R+A +L +K+  R   +PN++ Y  ++ G
Sbjct: 147 YDEMVARRIRFDDVLYGTLINGLCKSKIGKPRAAVQLLQKMEERQLVKPNLIMYNTVVHG 206

Query: 451 LCIEGGIEKAYDLLPDM 467
           LC +G I +A  L   M
Sbjct: 207 LCKDGNINEARVLCSKM 223


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 141/477 (29%), Positives = 233/477 (48%), Gaps = 57/477 (11%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           AL  F  +  +   P + +F +LL  L  +      + L  ++      P+ V+   LMN
Sbjct: 133 ALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMN 192

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
             C+   + +A   L R++     P  +T G ++ G+C +G    A  L  K        
Sbjct: 193 GLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEV---S 249

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
           ++IPNV+ Y++IID LCKDG  +  + LF +M+ +GI+PD F YNS+I  +C +  W DA
Sbjct: 250 HIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDA 309

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
           +      LE                 PDV++Y ++IN+  K+    +A+EL+ +M  RGI
Sbjct: 310 EQLLQEMLERK-------------ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGI 356

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
           IP+ + YSS+IDG+C   R+D A  +F  + ++GC P+  ++NTLI+ Y   +++++ + 
Sbjct: 357 IPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGME 416

Query: 371 LYGEMISMGVRPDNSCI------------LEAA-ELFRTLHNTKFELDLTVFNCLVDGLC 417
           L  EM   G+  D +              L AA +L + + ++    D+   + L+DGLC
Sbjct: 417 LLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLC 476

Query: 418 KSWRLRSAWELFKKL-----------PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
            + +L+ A E+FK +           P  G EP+V TY ++I GL  EG           
Sbjct: 477 DNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEG----------- 525

Query: 467 MEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
                 + L+A EL  +M  R + PD IT S + + L K     E   +  S  S++
Sbjct: 526 ------KFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKS 576



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 139/286 (48%), Gaps = 28/286 (9%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           + T G  P+ ++ N L++ +C    + D    L  +       D  T   LI G  + G 
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGD 445

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG-------- 224
              A  L  + ++      + P+++   +++DGLC +G +     +F  M+         
Sbjct: 446 LNAALDLLQEMIS----SGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDAS 501

Query: 225 ---RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
               G+ PD   YN LI      +N    +G    A EL+EE  +     G++  PD ++
Sbjct: 502 HPFNGVEPDVQTYNILISGL---IN----EGKFLEAEELYEEMPH----RGIV--PDTIT 548

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y S+I+ LCK   +D+A ++F  M S+   P+VV +++LI+GYC  GR+DD  +LF  + 
Sbjct: 549 YSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMG 608

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
             G + +  +Y TLI  + K+  +  AL ++ EMIS GV PD   I
Sbjct: 609 RRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITI 654



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 144/311 (46%), Gaps = 20/311 (6%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+ A   F  M     +P + +FN+L+    G K   + + L   +   GL+ D  + N 
Sbjct: 376 LDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNT 435

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF-----TK 182
           L++ F  +  ++ A   L  ++     PD+VT   L+ GLC  GK  +A  +F     +K
Sbjct: 436 LIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSK 495

Query: 183 FVAFDCRP--NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
                  P   V P+V  Y  +I GL  +G   +   L+ +M  RGI PD   Y+S+I  
Sbjct: 496 KDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDG 555

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
            C     ++A            +  +  G       P+V+++ ++IN  CK   VD   E
Sbjct: 556 LCKQSRLDEAT-----------QMFDSMGSKSF--SPNVVTFTTLINGYCKAGRVDDGLE 602

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           LF +M  RGI+ + + Y +LI G+  +G I+ A  +F  + S G  PDT +   ++    
Sbjct: 603 LFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLW 662

Query: 361 KIEKVEEALSL 371
             E+++ A+++
Sbjct: 663 SKEELKRAVAM 673



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 89/198 (44%), Gaps = 41/198 (20%)

Query: 355 LINSYSKIEKVEEALSLYGEMIS-------------MGV-----RPDNSCILEAAELFRT 396
           L + + +I+ +E+A+ L+ +M+              MGV     RPD         L++ 
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPD-----LVISLYQK 104

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           +   +   D+  FN L+   C   +L  A   F K+ + G  P+VVT+T ++ GLC+E  
Sbjct: 105 MERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDR 164

Query: 457 IEKAYDLLPDMEEKI----------------RE--CLKAIELLHKMAKRYVKPDEITVSI 498
           + +A +L   M E                  RE   ++A+ LL +M +  ++P +IT   
Sbjct: 165 VSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGT 224

Query: 499 LEELLNKDENCHECMNLL 516
           + + + K  +    +NLL
Sbjct: 225 IVDGMCKKGDTVSALNLL 242



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 96/229 (41%), Gaps = 32/229 (13%)

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           L  G+  +  ++DA  LF  +     +P    +  L+    ++E+ +  +SLY +M    
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 380 VRPD-------NSCILEAAEL------FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           +R D         C    ++L      F  +       D+  F  L+ GLC   R+  A 
Sbjct: 110 IRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEAL 169

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE----------------- 469
            LF ++      PNVVT+T ++ GLC EG I +A  LL  M E                 
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 470 -KIRECLKAIELLHKMAK-RYVKPDEITVSILEELLNKDENCHECMNLL 516
            K  + + A+ LL KM +  ++ P+ +  S + + L KD    +  NL 
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLF 278


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 152/565 (26%), Positives = 259/565 (45%), Gaps = 131/565 (23%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           ++++N+A+  F  MI  +P P +  F+ L  A+A +K Y   +   + ++  G+  +  +
Sbjct: 47  DIKVNEAIDLFESMIQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYT 106

Query: 125 LNILMNCFCK---------MIG--------------------------VSDAFVALGRIL 149
           +NI++NCFC+         ++G                          VS+A   + R++
Sbjct: 107 MNIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMV 166

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI---------------- 193
              + P+VVT+  LI GLC++G+ TEA  L  + V + C  N I                
Sbjct: 167 EMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTA 226

Query: 194 ---------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
                           +V+ Y+ +ID LCKDG ++    LF +M+ +GI  D   Y+S+I
Sbjct: 227 LALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSII 286

Query: 239 RVYCCAVNWEDA----------------------------KGNTSAALELHEEFVNGNGE 270
              C    W+D                             +G    A EL+ E V     
Sbjct: 287 GGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMV----A 342

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
            G+   PD ++Y S+I+  CK+  + +A ++   M S+G  P++V YS LI+ YC   R+
Sbjct: 343 RGI--APDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRV 400

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP-------- 382
           D+  +LF  I S+G + DT +YNTL+  + +  K+  A  L+ EM+S GV P        
Sbjct: 401 DNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGIL 460

Query: 383 -----DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
                DN  + +A E+F  +  ++  L + ++N ++ G+C + ++  AW LF  L   G 
Sbjct: 461 LDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGV 520

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK------------IRECL------KAIE 479
           +P+V+TY VMI GLC +G + +A  L   M+E             IR  L       ++E
Sbjct: 521 KPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNILIRAHLGGSGVISSVE 580

Query: 480 LLHKMAKRYVKPDEITVSILEELLN 504
           L+ +M  R    D  T+ ++  +L+
Sbjct: 581 LIEEMKMRGFAADASTIKMVVVMLS 605


>gi|297840249|ref|XP_002888006.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333847|gb|EFH64265.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 485

 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 139/455 (30%), Positives = 221/455 (48%), Gaps = 62/455 (13%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
            +K   + L++A+  F  MI  +P P +  F+ LL  +A  K Y   I L   +   G+ 
Sbjct: 42  TTKRLSMNLDEAIDLFCNMIQSRPLPSIVEFSKLLSNIAKSKNYDLVISLFHNMEICGIG 101

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
            D  + NI++NC C+      A   +G++++  + PDVVT+  LI G C   +   A  L
Sbjct: 102 HDLYTYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDL 161

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
            +K     C+ +V+     Y +IIDG CK G VN   VLF  M+  G+  D   YNSL+ 
Sbjct: 162 VSKMEEMRCKLDVV----IYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVT 217

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             CC+       G  S A  L  + V  +        P+V+++ ++IN+  ++    +AK
Sbjct: 218 GLCCS-------GRRSDAARLMRDMVMRD------IVPNVITFTALINAFVREGKFLEAK 264

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           + + +M  R I PDV  Y+S+I G C+ G++D+A+++   + ++GC PD  +YNTLIN +
Sbjct: 265 KFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQILDLMVTKGCFPDVVTYNTLINGF 324

Query: 360 SKIEKVEEALSLYGEMISMGV------------------RPD------------------ 383
            K ++V+E   L  EM   G+                  RPD                  
Sbjct: 325 CKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQGYFQAGRPDAAQEIFSRMGSRPNIRTY 384

Query: 384 ---------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
                    N  + +A  LF ++  ++ ELD+T +N ++ G+C    +  AW+LF  L  
Sbjct: 385 SILLYGLCYNWRVEKALVLFESMQKSEMELDITTYNIVIHGMCMIGNVEDAWDLFCSLSF 444

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
            G EP+VVTYT MI G C +   +KA  L   M+E
Sbjct: 445 KGLEPDVVTYTTMISGFCRKRLWDKADFLYRKMQE 479



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 150/321 (46%), Gaps = 22/321 (6%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G V  N+AL  F  M          ++NSL+  L       +   L   +    ++P+
Sbjct: 186 KTGLV--NNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRDIVPN 243

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            ++   L+N F +     +A      ++R+   PDV T   +I GLCM G+  EA  +  
Sbjct: 244 VITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQILD 303

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
             V   C     P+V+ Y ++I+G CK   V++   L  +M  RG+  D   +N++I+ Y
Sbjct: 304 LMVTKGC----FPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQGY 359

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
             A       G   AA E+     +          P++ +Y  ++  LC +  V+KA  L
Sbjct: 360 FQA-------GRPDAAQEIFSRMGS---------RPNIRTYSILLYGLCYNWRVEKALVL 403

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F  M+   +  D+  Y+ +I G C++G ++DA  LF S+  +G  PD  +Y T+I+ + +
Sbjct: 404 FESMQKSEMELDITTYNIVIHGMCMIGNVEDAWDLFCSLSFKGLEPDVVTYTTMISGFCR 463

Query: 362 IEKVEEALSLYGEMISMGVRP 382
               ++A  LY +M   G+ P
Sbjct: 464 KRLWDKADFLYRKMQEDGLLP 484


>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 450

 Score =  217 bits (552), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 140/441 (31%), Positives = 217/441 (49%), Gaps = 61/441 (13%)

Query: 116 IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
           IGL P  ++ N L+N  C    V +A   + +++ K    DVVT G ++ G+C  G    
Sbjct: 4   IGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKS 63

Query: 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
           A  L +K        ++ P+V+ Y++IID LCKDG  +  + LF +M  +GI P+ F YN
Sbjct: 64  ALNLLSKME----ETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYN 119

Query: 236 SLIRVYCCAVNWEDAKGNTSAALE--LHEEFVNGNG------------ELGVICH----- 276
            +I  +C    W DA+      +E  ++ + +  N             E   +C      
Sbjct: 120 CMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHR 179

Query: 277 ---PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
              PD ++Y S+I   CK    D AK +F  M S    PDVV ++++ID YC   R+D+ 
Sbjct: 180 CIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEG 235

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---------- 383
            +L   I   G + +T++YNTLI+ + +++ +  A  L+ EMIS GV PD          
Sbjct: 236 MQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYG 295

Query: 384 ---NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
              N  + EA ELF  +  +K +LD   +N ++ G+CK  ++  AW+LF  LP +G EP+
Sbjct: 296 FCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPD 355

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDMEEK------------IRECLKA------IELLH 482
           V TY VMI G C +  I  A  L   M++             IR CLKA      IEL+ 
Sbjct: 356 VQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELIS 415

Query: 483 KMAKRYVKPDEITVSILEELL 503
           +M       D  T+ ++ +L+
Sbjct: 416 EMRSNGFSGDAFTIKMVADLI 436



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 154/336 (45%), Gaps = 47/336 (13%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P VI + ++I+GLC +G V +   L   M G+G++ D   Y +++   C         G+
Sbjct: 8   PVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMC-------KMGD 60

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
           T +AL L  +    +        PDV+ Y +II+ LCKD     A+ LF +M  +GI P+
Sbjct: 61  TKSALNLLSKMEETH------IKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPN 114

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           V  Y+ +IDG+C  GR  DA++L   +      PD  ++N LI++  K  K+ EA  L  
Sbjct: 115 VFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCD 174

Query: 374 EMISMGVRPD----NSCIL---------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           EM+   + PD    NS I          +A  +F  + +     D+  FN ++D  C++ 
Sbjct: 175 EMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASP----DVVTFNTIIDVYCRAK 230

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIEL 480
           R+    +L +++ R G   N  TY  +I G C    +  A D                 L
Sbjct: 231 RVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQD-----------------L 273

Query: 481 LHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
             +M    V PD IT +IL     ++E   E + L 
Sbjct: 274 FQEMISHGVCPDTITCNILLYGFCENEKLEEALELF 309



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 185/408 (45%), Gaps = 46/408 (11%)

Query: 63  SGEVELNDALCFFNYMIHMQPTPFMPS---FNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           +G  ++ D     N +  M+ T   P    +++++  L    ++ +   L   +   G+ 
Sbjct: 53  NGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIA 112

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+  + N +++ FC     SDA   L  ++ +  +PDV+T   LI     +GK  EA  L
Sbjct: 113 PNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKL 172

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             + +       + P+ + Y S+I G CK    +  + +F  M      PD   +N++I 
Sbjct: 173 CDEML----HRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIID 224

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
           VYC A   ++        ++L  E        G++   +  +Y ++I+  C+   ++ A+
Sbjct: 225 VYCRAKRVDE-------GMQLLREI----SRRGLV--ANTTTYNTLIHGFCEVDNLNAAQ 271

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           +LF +M S G+ PD +  + L+ G+C   ++++A +LF  I+      DT +YN +I+  
Sbjct: 272 DLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGM 331

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            K  KV+EA  L+  +   GV P                      D+  +N ++ G C  
Sbjct: 332 CKGSKVDEAWDLFCSLPIHGVEP----------------------DVQTYNVMISGFCGK 369

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
             +  A  LF K+   G EP+  TY  +I G    G I+K+ +L+ +M
Sbjct: 370 SAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEM 417



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 151/327 (46%), Gaps = 25/327 (7%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALA--GKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +DA      MI  +  P + +FN+L+ A    GK +    +C  E L+   + PD V+ N
Sbjct: 132 SDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLC-DEMLHRC-IFPDTVTYN 189

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            ++  FCK     DA      +   + SPDVVT   +I   C   +  E   L  +    
Sbjct: 190 SMIYGFCKHNRFDDA----KHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREI--- 242

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             R  ++ N   Y ++I G C+   +N  + LF +M   G+ PD    N L+  +C    
Sbjct: 243 -SRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEK 301

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            E+A       LEL E       +L      D ++Y  II+ +CK   VD+A +LF  + 
Sbjct: 302 LEEA-------LELFEVIQMSKIDL------DTVAYNIIIHGMCKGSKVDEAWDLFCSLP 348

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
             G+ PDV  Y+ +I G+C    I DA  LF  ++  G  PD S+YNTLI    K  +++
Sbjct: 349 IHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEID 408

Query: 367 EALSLYGEMISMGVRPDNSCILEAAEL 393
           +++ L  EM S G   D   I   A+L
Sbjct: 409 KSIELISEMRSNGFSGDAFTIKMVADL 435


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 152/582 (26%), Positives = 256/582 (43%), Gaps = 157/582 (26%)

Query: 3   SSSPATSRTAFKVKPSSSLRNSKKPISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSK 62
           ++ P+ S  +F V+  S +R   + IS+N  N+                           
Sbjct: 27  TAPPSFSHCSFWVRDFSGVRYDYRKISINRLND--------------------------- 59

Query: 63  SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF 122
              ++L+DA+  F  M+  +P P +  F+ LL A+A    +   I L E++  +G+  + 
Sbjct: 60  ---LKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNL 116

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC-------------- 168
            + +IL+NCFC+   +S A   L ++++  + PD+VTL  L+ G C              
Sbjct: 117 YTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQ 176

Query: 169 ----------------MQGKF-----TEASGLFTKFVAFDCRPNVI-------------- 193
                           + G F     +EA  L  + V   C+P+++              
Sbjct: 177 MVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGD 236

Query: 194 -----------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
                            P V+ Y +IID LC    VN    LF +M  +GI P+   YNS
Sbjct: 237 IDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNS 296

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LIR  C    W DA    S  +E                +P+V+++ ++I++  K+  + 
Sbjct: 297 LIRCLCNYGRWSDASRLLSDMIERK-------------INPNVVTFSALIDAFVKEGKLV 343

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A++L+ +M  R I PD+  YSSLI+G+C+  R+D+A+ +F  + S+ C P+  +YNTLI
Sbjct: 344 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLI 403

Query: 357 NSYSKIEKVEEALSLYGE-----------------------------------MISMGVR 381
             + K ++V+E + L+ E                                   M+S GV 
Sbjct: 404 KGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVL 463

Query: 382 PD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
           PD             N  +  A  +F  L  +K E D+  +N +++G+CK+ ++   W+L
Sbjct: 464 PDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDL 523

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           F  L   G +PNVVTYT M+ G C +G  E+A  L  +M+E+
Sbjct: 524 FCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEE 565



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 157/348 (45%), Gaps = 38/348 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +NDAL  F  M +    P + ++NSL+  L     + +   L   +    + P+ V+ + 
Sbjct: 272 VNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 331

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++ F K   + +A      ++++   PD+ T   LI G CM  +  EA  +F   ++ D
Sbjct: 332 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 391

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C     PNV+ Y ++I G CK   V++   LF +M  RG+  +   Y +LI  +  A   
Sbjct: 392 C----FPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQAREC 447

Query: 248 EDAK----------------------------GNTSAALELHEEFVNGNGELGVICHPDV 279
           ++A+                            G    AL + E       E      PD+
Sbjct: 448 DNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKME------PDI 501

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
            +Y  +I  +CK   V+   +LF  +  +G+ P+VV Y++++ G+C  G  ++A  LF  
Sbjct: 502 YTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFRE 561

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
           ++ EG +PD+ +YNTLI ++ +      +  L  EM S     D S I
Sbjct: 562 MKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTI 609



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 139/320 (43%), Gaps = 44/320 (13%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           +DA    + MI  +  P + +F++L+ A   +   V    L + +    + PD  + + L
Sbjct: 308 SDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 367

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK------ 182
           +N FC    + +A      ++ K   P+VVT   LI+G C   +  E   LF +      
Sbjct: 368 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGL 427

Query: 183 --------------FVAFDC-----------RPNVIPNVICYASIIDGLCKDGFVNKVRV 217
                         F A +C              V+P+++ Y+ ++DGLC +G V    V
Sbjct: 428 VGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALV 487

Query: 218 LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277
           +F  ++   + PD + YN +I   C A   ED   +   +L L           GV   P
Sbjct: 488 VFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDG-WDLFCSLSLK----------GV--KP 534

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           +V++Y ++++  C+  L ++A  LF +MK  G +PD   Y++LI  +   G    + +L 
Sbjct: 535 NVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELI 594

Query: 338 VSIESEGCIPDTSSYNTLIN 357
             + S   + D S+   + N
Sbjct: 595 REMRSCRFVGDASTIGLVTN 614



 Score = 45.4 bits (106), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 78/215 (36%), Gaps = 51/215 (23%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E ++A   F  M+     P + +++ LL  L         + + E L    + PD  + N
Sbjct: 446 ECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYN 505

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           I++   CK   V D +     +  K   P+VVT   ++ G C +G   EA  LF      
Sbjct: 506 IMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFR----- 560

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                                             +MK  G  PD+  YN+LIR +     
Sbjct: 561 ----------------------------------EMKEEGPLPDSGTYNTLIRAHL---- 582

Query: 247 WEDAKGNTSAALELHEE-----FVNGNGELGVICH 276
                G+ +A+ EL  E     FV     +G++ +
Sbjct: 583 ---RDGDKAASAELIREMRSCRFVGDASTIGLVTN 614


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 147/474 (31%), Positives = 227/474 (47%), Gaps = 57/474 (12%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           A+  FN M+ M+P P    FN++L +L   K+Y   I L ++    G+ PD  +L+IL+N
Sbjct: 41  AVASFNLMLLMRPPPPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILIN 100

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
           CFC    ++ AF     IL++ F P+ +TL  LI+GLC +G+  +A     + VA     
Sbjct: 101 CFCHQAHITLAFSVFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVA----Q 156

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC-------- 242
               + + Y ++I+GLCK G    V  L   ++G  + PD  +YN++I   C        
Sbjct: 157 GFQLDQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDA 216

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVI--------------CHPDVLSYCSIINS 288
           C V  E      S  +  +   ++G   +G +               +P+V ++  +I++
Sbjct: 217 CDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDA 276

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           L K+  + +AK L   M    I PDV  Y+SLIDGY L+  +  A+ +F S+   G  PD
Sbjct: 277 LSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPD 336

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFR 395
              Y  +IN   K + V+EA+SL+ EM    + PD             N  +  A  L +
Sbjct: 337 VQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCK 396

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            +     + D+  +  L+DGLCKS RL  A E+F++L   G   NV  YTV+I  LC  G
Sbjct: 397 RMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAG 456

Query: 456 GIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVS-ILEELLNKDEN 508
             ++A DL   ME+K   C+               PD +T   I+  L  KDEN
Sbjct: 457 FFDEALDLKSKMEDK--GCM---------------PDAVTFDIIIRALFEKDEN 493



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 163/371 (43%), Gaps = 61/371 (16%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E+  AL F + ++         S+ +L+  L           L  +L    + PD V  N
Sbjct: 142 EIKKALYFHDQLVAQGFQLDQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYN 201

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            ++N  CK   + DA      ++ K  SPDVVT   LI G C+ G   EA  L  +    
Sbjct: 202 TIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKL- 260

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA-- 244
               N+ PNV  +  +ID L K+G + + ++L   M    I PD F YNSLI  Y     
Sbjct: 261 ---KNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDE 317

Query: 245 ------VNWEDAKGNTSAALELHEEFVNGNGELGVICH--------------PDVLSYCS 284
                 V +  A+   +  ++ +   +NG  +  ++                PD+++Y S
Sbjct: 318 VKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNS 377

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV------ 338
           +I+ LCK+  +++A  L   MK +GI PDV  Y+ L+DG C  GR++DA+++F       
Sbjct: 378 LIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKG 437

Query: 339 -----------------------------SIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
                                         +E +GC+PD  +++ +I +  + ++ ++A 
Sbjct: 438 YHLNVHAYTVLINRLCKAGFFDEALDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAE 497

Query: 370 SLYGEMISMGV 380
            +  EMI+ G+
Sbjct: 498 KILREMIARGL 508



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 124/282 (43%), Gaps = 17/282 (6%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            L +A    N M      P + +FN L+ AL+ +        L   +    + PD  + N
Sbjct: 247 HLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYN 306

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ +  +  V  A      + ++  +PDV     +I GLC      EA  LF +    
Sbjct: 307 SLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMK-- 364

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
               N+IP+++ Y S+IDGLCK+  + +   L   MK +GI PD + Y  L+   C +  
Sbjct: 365 --HKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGR 422

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            EDAK       E+ +        L    H +V +Y  +IN LCK    D+A +L   M+
Sbjct: 423 LEDAK-------EIFQRL------LAKGYHLNVHAYTVLINRLCKAGFFDEALDLKSKME 469

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
            +G +PD V +  +I         D A K+   + + G + +
Sbjct: 470 DKGCMPDAVTFDIIIRALFEKDENDKAEKILREMIARGLLKE 511


>gi|15221540|ref|NP_172145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205637|sp|Q9SHK2.1|PPR17_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g06580
 gi|6692678|gb|AAF24812.1|AC007592_5 F12K11.8 [Arabidopsis thaliana]
 gi|332189887|gb|AEE28008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 500

 Score =  216 bits (549), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 140/452 (30%), Positives = 214/452 (47%), Gaps = 47/452 (10%)

Query: 59  ENSKSG--EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           E  +SG   ++ NDAL  F  M    P P +  F+ LL A+A    Y   I L   L  +
Sbjct: 49  ERLRSGLHSIKFNDALTLFCDMAESHPLPSIVDFSRLLIAIAKLNKYEAVISLFRHLEML 108

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+  D  S   L++CFC+   +S A   LG++++  F P +VT G L+ G C   +F EA
Sbjct: 109 GISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEA 168

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L  + V         PNV+ Y +IID LC+ G VN    +   MK  GI PD   YNS
Sbjct: 169 MSLVDQIVGLGYE----PNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNS 224

Query: 237 LIRVYCCAVNWE-------------------------DAKGNTSAALELHEEFVNGNGEL 271
           LI     +  W                          D  G     LE  +++   N  +
Sbjct: 225 LITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQY---NEMI 281

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
               +P++++Y S+IN LC   L+D+AK++   + S+G  P+ V Y++LI+GYC   R+D
Sbjct: 282 QRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVD 341

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP--------- 382
           D  K+   +  +G   DT +YNTL   Y +  K   A  + G M+S GV P         
Sbjct: 342 DGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILL 401

Query: 383 ----DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
               D+  I +A      L  +K  + +  +N ++ GLCK+ ++  AW LF  L   G  
Sbjct: 402 DGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIIIKGLCKADKVEDAWYLFCSLALKGVS 461

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           P+V+TY  M+ GL  +    +A++L   M+++
Sbjct: 462 PDVITYITMMIGLRRKRLWREAHELYRKMQKE 493



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 117/290 (40%), Gaps = 46/290 (15%)

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLS----YCSIINSLCKDVLVDKAKELFLDMK 306
           KGN   AL L             IC+    S    Y   + S    +  + A  LF DM 
Sbjct: 24  KGNLVTALSLR------------ICNSRAFSGRSDYRERLRSGLHSIKFNDALTLFCDMA 71

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
               +P +V +S L+     + + +    LF  +E  G   D  S+ TLI+ + +  ++ 
Sbjct: 72  ESHPLPSIVDFSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFTTLIDCFCRCARLS 131

Query: 367 EALSLYGEMISMGVRP---------DNSC----ILEAAELFRTLHNTKFELDLTVFNCLV 413
            ALS  G+M+ +G  P         +  C      EA  L   +    +E ++ ++N ++
Sbjct: 132 LALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTII 191

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
           D LC+  ++ +A ++ K + + G  P+VVTY  +I  L   G    +  +L D       
Sbjct: 192 DSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSD------- 244

Query: 474 CLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
                     M +  + PD IT S L ++  K+    E        + R+
Sbjct: 245 ----------MMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRS 284


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 140/477 (29%), Positives = 232/477 (48%), Gaps = 57/477 (11%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           AL  F  +  +   P + +F +LL  L  +      +    ++      P+ V+   LMN
Sbjct: 133 ALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMN 192

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
             C+   + +A   L R++     P  +T G ++ G+C +G    A  L  K        
Sbjct: 193 GLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEV---S 249

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
           ++IPNV+ Y++IID LCKDG  +  + LF +M+ +GI+PD F YNS+I  +C +  W DA
Sbjct: 250 HIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDA 309

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
           +      LE                 PDV++Y ++IN+  K+    +A+EL+ +M  RGI
Sbjct: 310 EQLLQEMLERK-------------ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGI 356

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
           IP+ + YSS+IDG+C   R+D A  +F  + ++GC P+  ++NTLI+ Y   +++++ + 
Sbjct: 357 IPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGME 416

Query: 371 LYGEMISMGVRPDNSCI------------LEAA-ELFRTLHNTKFELDLTVFNCLVDGLC 417
           L  EM   G+  D +              L AA +L + + ++    D+   + L+DGLC
Sbjct: 417 LLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLC 476

Query: 418 KSWRLRSAWELFKKL-----------PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
            + +L+ A E+FK +           P  G EP+V TY ++I GL  EG           
Sbjct: 477 DNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEG----------- 525

Query: 467 MEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
                 + L+A EL  +M  R + PD IT S + + L K     E   +  S  S++
Sbjct: 526 ------KFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKS 576



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 139/286 (48%), Gaps = 28/286 (9%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           + T G  P+ ++ N L++ +C    + D    L  +       D  T   LI G  + G 
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGD 445

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG-------- 224
              A  L  + ++      + P+++   +++DGLC +G +     +F  M+         
Sbjct: 446 LNAALDLLQEMIS----SGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDAS 501

Query: 225 ---RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
               G+ PD   YN LI      +N    +G    A EL+EE  +     G++  PD ++
Sbjct: 502 HPFNGVEPDVQTYNILISGL---IN----EGKFLEAEELYEEMPH----RGIV--PDTIT 548

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y S+I+ LCK   +D+A ++F  M S+   P+VV +++LI+GYC  GR+DD  +LF  + 
Sbjct: 549 YSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMG 608

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
             G + +  +Y TLI  + K+  +  AL ++ EMIS GV PD   I
Sbjct: 609 RRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITI 654



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 142/311 (45%), Gaps = 20/311 (6%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+ A   F  M     +P + +FN+L+    G K   + + L   +   GL+ D  + N 
Sbjct: 376 LDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNT 435

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT------ 181
           L++ F  +  ++ A   L  ++     PD+VT   L+ GLC  GK  +A  +F       
Sbjct: 436 LIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSK 495

Query: 182 -KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
               A      V P+V  Y  +I GL  +G   +   L+ +M  RGI PD   Y+S+I  
Sbjct: 496 KDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDG 555

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
            C     ++A            +  +  G       P+V+++ ++IN  CK   VD   E
Sbjct: 556 LCKQSRLDEAT-----------QMFDSMGSKSF--SPNVVTFTTLINGYCKAGRVDDGLE 602

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           LF +M  RGI+ + + Y +LI G+  +G I+ A  +F  + S G  PDT +   ++    
Sbjct: 603 LFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLW 662

Query: 361 KIEKVEEALSL 371
             E+++ A+++
Sbjct: 663 SKEELKRAVAM 673



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 88/198 (44%), Gaps = 41/198 (20%)

Query: 355 LINSYSKIEKVEEALSLYGEMIS-------------MGV-----RPDNSCILEAAELFRT 396
           L + + +I+ +E+A+ L+ +M+              MGV     RPD         L++ 
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPD-----LVISLYQK 104

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           +   +   D+  FN L+   C   +L  A   F K+ + G  P+VVT+T ++ GLC+E  
Sbjct: 105 MERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDR 164

Query: 457 IEKAYDLLPDMEEKI----------------RE--CLKAIELLHKMAKRYVKPDEITVSI 498
           + +A D    M E                  RE   ++A+ LL +M +  ++P +IT   
Sbjct: 165 VSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGT 224

Query: 499 LEELLNKDENCHECMNLL 516
           + + + K  +    +NLL
Sbjct: 225 IVDGMCKKGDTVSALNLL 242



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 96/229 (41%), Gaps = 32/229 (13%)

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           L  G+  +  ++DA  LF  +     +P    +  L+    ++E+ +  +SLY +M    
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQ 109

Query: 380 VRPD-------NSCILEAAEL------FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           +R D         C    ++L      F  +       D+  F  L+ GLC   R+  A 
Sbjct: 110 IRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEAL 169

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE----------------- 469
           + F ++      PNVVT+T ++ GLC EG I +A  LL  M E                 
Sbjct: 170 DFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 470 -KIRECLKAIELLHKMAK-RYVKPDEITVSILEELLNKDENCHECMNLL 516
            K  + + A+ LL KM +  ++ P+ +  S + + L KD    +  NL 
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLF 278


>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
          Length = 506

 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 133/481 (27%), Positives = 226/481 (46%), Gaps = 98/481 (20%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +++ A+  FN ++H  PT     FN +LG+L   K+Y   + LS+++   G+ P+FV+ N
Sbjct: 48  DVDGAVSLFNSLLHQNPTLTAFEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPNFVTFN 107

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           IL+NCFC++  +  AF  L +IL+  + PD++TL   I+G C++G+  +A     K VA 
Sbjct: 108 ILINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQALNFHDKLVAL 167

Query: 187 DCRPNVIP-------------------------------NVICYASIIDGLCKDGFVNKV 215
               + +                                N + Y ++IDG+ KD  VN  
Sbjct: 168 GFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDA 227

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG--------NTSAALELHEEFVNG 267
             L+ +M  + I PD   Y++LIR +      +DA          N    +      V+G
Sbjct: 228 FDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDG 287

Query: 268 NGELGVI--------------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
             + G +                P+V ++ ++++  CKD  + + K +F  M  +GI P+
Sbjct: 288 FCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPN 347

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           VV Y SL+DGYCL+ +++ A+K+F ++   G   +  SYN +IN + KI+KV++A+ L+ 
Sbjct: 348 VVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKLFI 407

Query: 374 EMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
           EM    + P                      D+  +N L+DGLCKS ++  A++L  ++ 
Sbjct: 408 EMHHKHIIP----------------------DVVTYNSLIDGLCKSGKISYAFQLVNEMH 445

Query: 434 RYGPEPNVVTY-----------------------TVMICGLCIEGGIEKAYDLLPDMEEK 470
             G  PN++TY                       T++I GLC  G +E A  +  D+  K
Sbjct: 446 DRGQPPNIITYNSILNALLTKLKDQGIQPNMHTDTILIKGLCQSGKLEAARKVFEDLLVK 505

Query: 471 I 471
           I
Sbjct: 506 I 506



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 107/241 (44%), Gaps = 39/241 (16%)

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
           +P+ +++  +IN  C+  L+  A  +   +   G  PD++  ++ I G+CL G+I  A  
Sbjct: 100 NPNFVTFNILINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQALN 159

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395
               + + G   D  SY TLIN   K+ +   AL                      +L R
Sbjct: 160 FHDKLVALGFHLDQVSYGTLINGLCKVGETRAAL----------------------QLLR 197

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            +     +L+  ++N ++DG+ K   +  A++L+ ++      P+VVTY+ +I G  I G
Sbjct: 198 RVDGKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVG 257

Query: 456 GIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
            ++ A                 I+L +KM    +KPD  T +IL +   K+    +  N+
Sbjct: 258 KLKDA-----------------IDLFNKMILENIKPDVYTFNILVDGFCKEGRLKKAKNV 300

Query: 516 L 516
           L
Sbjct: 301 L 301


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  215 bits (547), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 145/498 (29%), Positives = 243/498 (48%), Gaps = 77/498 (15%)

Query: 75  FNYMIHMQ-PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
           FN ++H + P P +  F  +LG+L    +Y   + L  ++   G+  D V L+IL+NCF 
Sbjct: 59  FNRLLHQKNPKPSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVILSILINCFS 118

Query: 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN-- 191
           ++     +F  L +IL+  + P+V+TL  LI+GLC++G+  +A     K VA     N  
Sbjct: 119 QLGQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKV 178

Query: 192 -----------------------------VIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
                                        V PNV+ Y +IID +CK   VN+   L+ +M
Sbjct: 179 SYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEM 238

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
             +GI PD   YN+LI  +C     +DA        +L  + +  N       +P+V ++
Sbjct: 239 VSKGISPDVVTYNALISGFCIVGKMKDAT-------DLFNKMIFEN------INPNVYTF 285

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
             +++  CK+  + +AK +   M  +GI PDV  Y+SL+D YCL+  ++ A+ +F +I  
Sbjct: 286 NILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQ 345

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSC---------ILE 389
            G  P+  SY+ +I+ + KI+KV+EA++L+ EM    + PD    NS          I  
Sbjct: 346 RGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISY 405

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
           A +L   +H+     D   +N ++D LCK+ ++  A  L  K+   G +P++ TYT ++ 
Sbjct: 406 ALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVD 465

Query: 450 GLCIEGGIEKAYDLLPDMEEK-------IRECL-----------KAIELLHKMAKRYVKP 491
           GLC  G +E A  +  D+  K       I   +           ++++LL KM +    P
Sbjct: 466 GLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIP 525

Query: 492 DEITVSILE-ELLNKDEN 508
           + +T  I+   L +KDEN
Sbjct: 526 NAVTYEIIICSLFDKDEN 543



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 124/414 (29%), Positives = 205/414 (49%), Gaps = 30/414 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +++ AL F + ++ +       S+ +L+  L         + L  R++   + P+ V  N
Sbjct: 157 QIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYN 216

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            +++  CK+  V++AF     ++ K  SPDVVT   LI G C+ GK  +A+ LF K +  
Sbjct: 217 TIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIF- 275

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
               N+ PNV  +  ++DG CK+  + + + +   M  +GI PD F YNSL+  YC    
Sbjct: 276 ---ENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKE 332

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
              AK              N   + GV  +P++ SY  +I+  CK   VD+A  LF +M 
Sbjct: 333 VNKAK-----------HIFNTISQRGV--NPNIHSYSIMIHGFCKIKKVDEAMNLFKEMH 379

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
              IIPDVV Y+SLIDG C +G+I  A KL   +   G   D  +YN+++++  K  +V+
Sbjct: 380 CNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVD 439

Query: 367 EALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLV 413
           +A++L  +M   G++PD             N  + +A  +F  L    + LD+ ++  ++
Sbjct: 440 KAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMI 499

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            G C       + +L  K+   G  PN VTY ++IC L  +   +KA  LL +M
Sbjct: 500 QGFCSHGLFDESLDLLSKMEENGCIPNAVTYEIIICSLFDKDENDKAEKLLREM 553



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 157/314 (50%), Gaps = 17/314 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++ DA   FN MI     P + +FN L+     ++       +   +   G+ PD  + N
Sbjct: 262 KMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYN 321

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            LM+ +C +  V+ A      I ++  +P++ +   +I G C   K  EA  LF +    
Sbjct: 322 SLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEM--- 378

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C  N+IP+V+ Y S+IDGLCK G ++    L  +M  RG+  D   YNS++   C    
Sbjct: 379 HCN-NIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQ 437

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            + A    +   ++ +E +           PD+ +Y ++++ LCK+  ++ A+ +F D+ 
Sbjct: 438 VDKA---IALLTKMKDEGI----------QPDICTYTTLVDGLCKNGRLEDARIVFEDLL 484

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            +G I DV +Y+++I G+C  G  D++  L   +E  GCIP+  +Y  +I S    ++ +
Sbjct: 485 VKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTYEIIICSLFDKDEND 544

Query: 367 EALSLYGEMISMGV 380
           +A  L  EMI+ G+
Sbjct: 545 KAEKLLREMITRGL 558



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 143/318 (44%), Gaps = 43/318 (13%)

Query: 226 GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSI 285
           G  P+     +LI+  C        KG    AL+ H++ V     LG   H + +SY ++
Sbjct: 137 GYEPNVITLTTLIKGLCL-------KGQIHQALQFHDKVV----ALGF--HLNKVSYGTL 183

Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
           IN LCK      A +L   +  + + P+VV+Y+++ID  C +  +++A  L+  + S+G 
Sbjct: 184 INGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGI 243

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC----ILEAAE 392
            PD  +YN LI+ +  + K+++A  L+ +MI   + P         D  C    + EA  
Sbjct: 244 SPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKN 303

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
           +   +     + D+  +N L+D  C    +  A  +F  + + G  PN+ +Y++MI G C
Sbjct: 304 VLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFC 363

Query: 453 IEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHEC 512
                            KI++  +A+ L  +M    + PD +T + L + L K       
Sbjct: 364 -----------------KIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYA 406

Query: 513 MNLLPSFLSRNQEESKLT 530
           + L+     R     K+T
Sbjct: 407 LKLVDEMHDRGVPHDKIT 424



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 4/140 (2%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++NS+L AL         I L  ++   G+ PD  +   L++  CK   + DA +    +
Sbjct: 424 TYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDL 483

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
           L K +  DV     +I+G C  G F E+  L +K     C    IPN + Y  II  L  
Sbjct: 484 LVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGC----IPNAVTYEIIICSLFD 539

Query: 209 DGFVNKVRVLFLDMKGRGIY 228
               +K   L  +M  RG++
Sbjct: 540 KDENDKAEKLLREMITRGLF 559


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  215 bits (547), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 142/483 (29%), Positives = 234/483 (48%), Gaps = 84/483 (17%)

Query: 107 ICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166
           + L + +   GL  D  +  IL+N  CK      A + L   ++     DV T G +I  
Sbjct: 97  VQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLA-IKLHEKMKGNCKGDVFTYGMIIDS 155

Query: 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
           LC  G  TEA  +F++ +       ++P+V+ Y+S++DGLC+ G + +    F +M+GRG
Sbjct: 156 LCKDGMTTEALDMFSEMIG----AGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRG 211

Query: 227 IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII 286
           I  D + YNSLI     A  W++              F+N   + G    PD  ++  +I
Sbjct: 212 ISADVYTYNSLIHGLSRAGLWKEVTW-----------FLNLMVDRGF--SPDAFTFTILI 258

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           + LCK+  V +A+++   M  +G  PD++ Y++L++G CL+G+++DA KLF S+   G  
Sbjct: 259 DGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIK 318

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----------------------- 383
            +  SYN LIN Y K +K++EA  L+ EM   G++P                        
Sbjct: 319 LNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKL 378

Query: 384 -------------------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
                                    N  + EA +LF+++  T+ + ++ VF+ L+DG+C+
Sbjct: 379 FVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCR 438

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-------- 470
           + +L  AW+ F ++ + G EP+ + Y ++I GLC +G + +A  LL  MEEK        
Sbjct: 439 AGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSIT 498

Query: 471 ----IRECLK------AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
               I+  LK      AI+LL +M  R   PDE   S+L  L + D   H  +  LP+ L
Sbjct: 499 FNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLLCLASFDPQWHAALVSLPNAL 558

Query: 521 SRN 523
            + 
Sbjct: 559 QKG 561



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 148/290 (51%), Gaps = 27/290 (9%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P+ +   +++ G+  +  +     LF +M  +G++ DA  Y  LI   C A         
Sbjct: 75  PDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARK------- 127

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
           T  A++LHE+ + GN      C  DV +Y  II+SLCKD +  +A ++F +M   GI+PD
Sbjct: 128 TGLAIKLHEK-MKGN------CKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPD 180

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           VVVYSSL+DG C  GR+ +A + F  +E  G   D  +YN+LI+  S+    +E      
Sbjct: 181 VVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLN 240

Query: 374 EMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
            M+  G  PD                + EA ++   +H+   E D+  +N L++GLC   
Sbjct: 241 LMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVG 300

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           +L  A +LF+ L   G + NV +Y ++I G C +  I++A+ L  +M  K
Sbjct: 301 QLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPK 350



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 157/346 (45%), Gaps = 38/346 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L +AL FF  M     +  + ++NSL+  L+    +         +   G  PD  +  I
Sbjct: 197 LKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTI 256

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++  CK   V +A   L  +  K   PD++T   L+ GLC+ G+  +A+ LF       
Sbjct: 257 LIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLA--- 313

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               +  NV  Y  +I+G CKD  +++   LF +M+ +G+ P    YN+LI   C +   
Sbjct: 314 -DRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRV 372

Query: 248 EDAK----------------------------GNTSAALELHEEFVNGNGELGVICHPDV 279
             A+                            G+   A++L +       +      P++
Sbjct: 373 RTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHK------PNI 426

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
             +  +++ +C+   +++A + F ++   G+ PD + Y+ LI+G C  G + +A KL   
Sbjct: 427 EVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQ 486

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
           +E +GC+PD+ ++N +I +  K  ++ EA+ L  EM +    PD +
Sbjct: 487 MEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEA 532



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 128/292 (43%), Gaps = 17/292 (5%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E ++ +A      M H    P + ++N+L+  L       +   L E L   G+  +  S
Sbjct: 264 EGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFS 323

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            NIL+N +CK   + +AF     +  K   P  VT   LI  LC  G+   A  LF +  
Sbjct: 324 YNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQ 383

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
              C       +  Y  ++DGLCK+G + +   LF  +K     P+  V++ L+   C A
Sbjct: 384 T--C--GQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRA 439

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                  G    A +  +E ++ NG       PD ++Y  +IN LC   ++ +A +L   
Sbjct: 440 -------GKLEEAWKQFDE-ISKNG-----LEPDTIAYNILINGLCNKGMLSEAVKLLWQ 486

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           M+ +G +PD + ++ +I        I +A +L   + +    PD +  + L+
Sbjct: 487 MEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLL 538


>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 153/495 (30%), Positives = 242/495 (48%), Gaps = 71/495 (14%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGAL-AGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +++A+  FN M  ++ TP +  FN +L  L   K +Y   + LS ++ + G+ PD  +L+
Sbjct: 47  VDNAVLSFNRMRQIRQTPSIVEFNKILTYLIKTKNHYPTVLSLSTQMESKGVKPDLFTLS 106

Query: 127 ILMNCFCKMIGVSDAFVALGRILR-------KV--------------FSPDVVTLGCLIR 165
           IL+NC+C +  ++ AF    +IL+       KV              F  + VT G LI 
Sbjct: 107 ILINCYCHLGQMTFAFSVFAKILKMGLCLNGKVNEALLFHDHVLALGFHLNHVTYGILIN 166

Query: 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225
           GLC  G+   A  +  +         V  NV+ Y++IIDGLCKD  V     L+ +M  +
Sbjct: 167 GLCKMGQTRAALQVLRQIEG----KLVNTNVVMYSTIIDGLCKDKLVTDAYGLYSEMIVK 222

Query: 226 GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSI 285
            I P    ++SLI  +C    ++DA         L  E V  N       +PD  ++  +
Sbjct: 223 RIPPTVVTFSSLIYGFCIVGKFKDA-------FRLFNEMVMKN------INPDAYTFNIL 269

Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
           +++LCK+  + +AK +   M   G+ P VV Y++L+DGYCL+  +  A+ +   I     
Sbjct: 270 VDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRV 329

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC----ILEAAE 392
            P++ SYN +IN + KI+ V+EAL L+ EM   G+ P         D  C    I  A E
Sbjct: 330 APNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWE 389

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
           L   +HN     D+  +N L+D  CK+  +  A  L KK+  +G +PN+ TY ++I GLC
Sbjct: 390 LVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQPNMCTYNILIDGLC 449

Query: 453 IEGGIEKAYDLLPDMEEK----------------IRECL--KAIELLHKMAKRYVKPDEI 494
             G ++ A D+  D+  K                 +E L  +A  LL KM    + PD +
Sbjct: 450 KGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEAEVLLSKMEDNGIIPDAV 509

Query: 495 TV-SILEELLNKDEN 508
           T  +I++ L +KDEN
Sbjct: 510 TYETIIQALFHKDEN 524



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 110/361 (30%), Positives = 174/361 (48%), Gaps = 32/361 (8%)

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           + V  + +++  CK   V+DA+     ++ K   P VVT   LI G C+ GKF +A  LF
Sbjct: 192 NVVMYSTIIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLF 251

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            + V      N+ P+   +  ++D LCK+G + + + +   M   G+ P    YN+L+  
Sbjct: 252 NEMVM----KNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDG 307

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
           YC       AK   S    +                P+  SY  +IN  CK  +VD+A  
Sbjct: 308 YCLVNEVGKAKHVLSIISRMR-------------VAPNSRSYNIMINGFCKIKMVDEALC 354

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP-DTSSYNTLINSY 359
           LF +M  RGI P  V Y+SLIDG C  GRI  A +L   + +  CIP D  +YN+LI+ +
Sbjct: 355 LFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMHNN-CIPADIVTYNSLIDVF 413

Query: 360 SKIEKVEEALSLYGEMISMGVRP---------DNSC----ILEAAELFRTLHNTKFELDL 406
            K + V++A++L  ++   G++P         D  C    +  A ++F+ L    + ++ 
Sbjct: 414 CKNQHVDKAIALVKKIKEHGIQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNA 473

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             +N +++GLCK      A  L  K+   G  P+ VTY  +I  L  +   EKA  LL +
Sbjct: 474 WTYNIMINGLCKEGLFDEAEVLLSKMEDNGIIPDAVTYETIIQALFHKDENEKAQKLLRE 533

Query: 467 M 467
           M
Sbjct: 534 M 534



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 167/385 (43%), Gaps = 60/385 (15%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           + DA   ++ MI  +  P + +F+SL+        + +   L   +    + PD  + NI
Sbjct: 209 VTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNI 268

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++  CK   + +A   +  ++++   P VVT   L+ G C+  +  +A  +    ++  
Sbjct: 269 LVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHV----LSII 324

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            R  V PN   Y  +I+G CK   V++   LF +M  RGI P    YNSLI   C A   
Sbjct: 325 SRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKA--- 381

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHP-DVLSYCSIINSLCKDVLVDKAKELFLDMK 306
               G    A EL +E  N        C P D+++Y S+I+  CK+  VDKA  L   +K
Sbjct: 382 ----GRIPYAWELVDEMHNN-------CIPADIVTYNSLIDVFCKNQHVDKAIALVKKIK 430

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRI-----------------------------------D 331
             GI P++  Y+ LIDG C  G++                                   D
Sbjct: 431 EHGIQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFD 490

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAA 391
           +A  L   +E  G IPD  +Y T+I +    ++ E+A  L  EM+  GV      ++ A 
Sbjct: 491 EAEVLLSKMEDNGIIPDAVTYETIIQALFHKDENEKAQKLLREMVIKGV------VVYAF 544

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGL 416
           E+ RTL      L + + + L   L
Sbjct: 545 EIRRTLVGRTLNLGMNLISLLFSAL 569


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 130/478 (27%), Positives = 228/478 (47%), Gaps = 92/478 (19%)

Query: 66  VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
           ++L+DA+  F  M+  +P P +  FN LL A+A  K +   I L E++  +G+  +  + 
Sbjct: 64  MKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTY 123

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           NIL+NCFC+   +S A   LG++++  + P +VTL  L+ G C   + ++A  L  + V 
Sbjct: 124 NILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVE 183

Query: 186 FDCRPNVI-------------------------------PNVICYASIIDGLCKDG---- 210
              RP+ I                               PN++ Y  +++GLCK G    
Sbjct: 184 MGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDL 243

Query: 211 ---FVNKVRV----------------------------LFLDMKGRGIYPDAFVYNSLIR 239
               +NK+                              LF +M+ +G+ P+   Y+SLI 
Sbjct: 244 AFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLIS 303

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C    W DA    S  +E                +P+V+++ ++I++  K+  + +A+
Sbjct: 304 CLCNYERWSDASRLLSDMIERK-------------INPNVVTFNALIDAFVKEGKLVEAE 350

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           +L+ +M  R I PD+  YSSLI+G+C+  R+D+A+ +F  + S+ C P+  +YNTLIN +
Sbjct: 351 KLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGF 410

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCIL-------------EAAELFRTLHNTKFELDL 406
            K ++++E + L+ EM   G+  +                   A  +F+ + +     ++
Sbjct: 411 CKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNI 470

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
             +N L+DGLCK+ +L  A  +F+ L R   EP + TY +MI G+C  G +E  +DL 
Sbjct: 471 MTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF 528



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 161/317 (50%), Gaps = 17/317 (5%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           +DAL  F  M +    P + +++SL+  L   + + +   L   +    + P+ V+ N L
Sbjct: 277 DDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNAL 336

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           ++ F K   + +A      ++++   PD+ T   LI G CM  +  EA  +F   ++ DC
Sbjct: 337 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 396

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
                PNV+ Y ++I+G CK   +++   LF +M  RG+  +   Y +LI  +  A + +
Sbjct: 397 ----FPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCD 452

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
           +A+      +   +   +G        HP++++Y ++++ LCK+  ++KA  +F  ++  
Sbjct: 453 NAQ------MVFKQMVSDG-------VHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS 499

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
            + P +  Y+ +I+G C  G+++D   LF S+  +G  PD   YNT+I+ + +    EEA
Sbjct: 500 KMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEA 559

Query: 369 LSLYGEMISMGVRPDNS 385
            +L+ +M   G  PD+ 
Sbjct: 560 DALFRKMREDGPLPDSG 576



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 114/272 (41%), Gaps = 31/272 (11%)

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y  I+ +    + +D A  LF  M     +P +  ++ L+     M + D    L   ++
Sbjct: 53  YREILRNGLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQ 112

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC----IL 388
             G   +  +YN LIN + +  ++  AL+L G+M+ +G  P         +  C    I 
Sbjct: 113 RLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRIS 172

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
           +A  L   +    +  D   F  L+ GL    +   A  L  ++ + G +PN+VTY V++
Sbjct: 173 DAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVV 232

Query: 449 CGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVK 490
            GLC  G I+ A++LL  ME                   K R    A+ L  +M  + V+
Sbjct: 233 NGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVR 292

Query: 491 PDEITVSILEELLNKDENCHECMNLLPSFLSR 522
           P+ IT S L   L   E   +   LL   + R
Sbjct: 293 PNVITYSSLISCLCNYERWSDASRLLSDMIER 324


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 136/499 (27%), Positives = 226/499 (45%), Gaps = 113/499 (22%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           M+  +P P +  FN LL A+A  K +   I L E++  +G+  +  + NIL+NCFC+   
Sbjct: 1   MVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQ 60

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI---- 193
           +S A   LG++++  + P +VTL  L+ G C   + ++A  L  + V    RP+ I    
Sbjct: 61  ISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTT 120

Query: 194 ---------------------------PNVICYASIIDGLCKDG-------FVNKVRV-- 217
                                      PN++ Y  +++GLCK G        +NK+    
Sbjct: 121 LIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAK 180

Query: 218 --------------------------LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA- 250
                                     LF +M+ +GI P+   Y+SLI   C    W DA 
Sbjct: 181 IEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDAS 240

Query: 251 ---------------------------KGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
                                      +G    A +LH++ +  +        PD+ +Y 
Sbjct: 241 QLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRS------IDPDIFTYN 294

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
           S+IN  C    +DKAK++F  M S+   PD+  Y++LI G+C   R++D  +LF  +   
Sbjct: 295 SLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHR 354

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEA 390
           G + DT +Y TLI         + A  ++ +M+S GV PD             N  + +A
Sbjct: 355 GLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKA 414

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
            E+F  +  ++ +LD+ ++  +++G+CK+ ++   W+LF  L   G +PNVVTY  MI G
Sbjct: 415 LEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISG 474

Query: 451 LCIEGGIEKAYDLLPDMEE 469
           LC +  +++AY LL  M+E
Sbjct: 475 LCSKRLLQEAYALLKKMKE 493



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 190/393 (48%), Gaps = 45/393 (11%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G+++L  A    N M   +    +  FN+++ +L   ++  + + L + + T G+ P+
Sbjct: 162 KRGDIDL--AFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPN 219

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+ + L++C C     SDA   L  ++ K  +P++VT   LI     +GKF EA  L  
Sbjct: 220 VVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHD 279

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
             +    + ++ P++  Y S+I+G C    ++K + +F  M  +  +PD   YN+LI+ +
Sbjct: 280 DMI----KRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGF 335

Query: 242 CCAVNWEDAK------------GNTSAALELHEE-FVNGNGE---------LGVICHPDV 279
           C +   ED              G+T     L +  F +G+ +         +     PD+
Sbjct: 336 CKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDI 395

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           ++Y  +++ LC +  ++KA E+F  M+   I  D+ +Y+++I+G C  G++DD   LF S
Sbjct: 396 MTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCS 455

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCI-------- 387
           +  +G  P+  +YNT+I+       ++EA +L  +M   G  PD    N+ I        
Sbjct: 456 LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGD 515

Query: 388 -LEAAELFRTLHNTKFELDLT----VFNCLVDG 415
              +AEL R + + +F  D +    V N L DG
Sbjct: 516 KAASAELIREMRSCRFVGDASTIGLVANMLHDG 548



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 104/240 (43%), Gaps = 39/240 (16%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P +  +  +++++ K    D    L   M+  GI  ++  Y+ LI+ +C   +I  A  L
Sbjct: 8   PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
              +   G  P   + ++L+N Y   +++ +A++L  +M+ MG RPD             
Sbjct: 68  LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDT------------ 115

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
                       F  L+ GL    +   A  L  ++ + G +PN+VTY V++ GLC  G 
Sbjct: 116 ----------ITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 165

Query: 457 IEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           I+ A++LL                 +KM    ++ D +  + + + L K  +  + +NL 
Sbjct: 166 IDLAFNLL-----------------NKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLF 208


>gi|22128591|gb|AAM52341.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 592

 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 152/556 (27%), Positives = 257/556 (46%), Gaps = 114/556 (20%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+DA   F  M+  +P P + SF+ LL AL   K+Y + + L   ++ + +      L+I
Sbjct: 53  LDDAFSLFRQMVRTKPLPSVVSFSKLLKALVHMKHYSSVVSLFREIHKLRIPVHEFILSI 112

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++N  C M      F  L    +K    + V    L+RGL  + K  +A  LF K V  +
Sbjct: 113 VVNSCCLMHRTDLGFSVLAIHFKKGIPFNQVIFNTLLRGLFAENKVKDAVHLFKKLVREN 172

Query: 188 -CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKV 215
            C PN +                               PN   Y+ +ID  CKDG ++  
Sbjct: 173 ICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKDGMLDGA 232

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
             L  +MK + I PD F Y++LI   C    WE+ +        L  E ++ N       
Sbjct: 233 TSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVR-------TLFLEMIHLN------I 279

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
           +P+V ++ S+I+ LCK+  V+ A+E+   M  +G+ PDV+ Y+ +IDGY L G++D AR+
Sbjct: 280 YPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRARE 339

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL------------------------ 371
           +F S+ ++   P+  SYN LIN Y++ +K++EA+ +                        
Sbjct: 340 IFDSMINKSIEPNIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLF 399

Query: 372 -----------YGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLT 407
                      + EM+S G  PD             N  + EA   F  L   + + ++ 
Sbjct: 400 ELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQ 459

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           ++  ++DGLCK+ +L  A   F+KLP  G  P+V+TYT MI G C EG +++A D+L  M
Sbjct: 460 IYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKM 519

Query: 468 EEK------------IRECLKAIEL------LHKMAKRYVKPDEITVSILEELLNKDENC 509
           E+             +R  L++ ++      L ++A +    +  TV +L +++ +D + 
Sbjct: 520 EDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMDIIAEDPS- 578

Query: 510 HECMNLLPSFLSRNQE 525
              +N++P F   N++
Sbjct: 579 --LLNMIPEFHRDNKK 592


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 137/519 (26%), Positives = 238/519 (45%), Gaps = 127/519 (24%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
            ++L++A+  F  M+  +P P +  F+ LL A+A  K +   I   E++  +G+  +  +
Sbjct: 43  HLKLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYT 102

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            NI++NC C+   +S A   LG++++  + P +VTL  L+ G C   + +EA  L  + V
Sbjct: 103 YNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMV 162

Query: 185 AFDCRPNVI-------------------------------PNVICYASIIDGLCKDG--- 210
               +P+ +                               P+++ Y ++I+GLCK G   
Sbjct: 163 EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPD 222

Query: 211 ----FVNKVRV----------------------------LFLDMKGRGIYPDAFVYNSLI 238
                +NK+                              LF +M  +GI PD F Y+SLI
Sbjct: 223 LALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLI 282

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
              C    W DA    S  LE                +P+V+++ S+I++  K+  + +A
Sbjct: 283 SCLCNYGRWSDASRLLSDMLERK-------------INPNVVTFNSLIDAFAKEGKLIEA 329

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
           ++LF +M  R I P++V Y+SLI+G+C+  R+D+A+++F  + S+ C+PD  +YNTLIN 
Sbjct: 330 EKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLING 389

Query: 359 YSKIEKVEEALSL-----------------------------------YGEMISMGVRPD 383
           + K +KV + + L                                   + +M+S GV P+
Sbjct: 390 FCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPN 449

Query: 384 -------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
                        N  + +A  +F  L  +K E D+  +N + +G+CK+ ++   W+LF 
Sbjct: 450 IMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFC 509

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
            L   G +P+V+ Y  MI G C +G  E+AY L   M+E
Sbjct: 510 SLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKE 548



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 180/363 (49%), Gaps = 30/363 (8%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            ++DAL  F  M +    P + +++SL+  L     + +   L   +    + P+ V+ N
Sbjct: 255 HVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFN 314

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ F K   + +A      ++++   P++VT   LI G CM  +  EA  +FT  V+ 
Sbjct: 315 SLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSK 374

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           DC    +P+V+ Y ++I+G CK   V     LF DM  RG+  +   Y +LI  +  A +
Sbjct: 375 DC----LPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASD 430

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            ++A+      +   +   +G        HP++++Y ++++ LCK+  ++KA  +F  ++
Sbjct: 431 CDNAQ------MVFKQMVSDG-------VHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ 477

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
              + PD+  Y+ + +G C  G+++D   LF S+  +G  PD  +YNT+I+ + K    E
Sbjct: 478 KSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKE 537

Query: 367 EALSLYGEMISMGVRPD----NSCI---------LEAAELFRTLHNTKFELDLTVFNCLV 413
           EA +L+ +M   G  PD    N+ I           +AEL + + + +F  D + +  + 
Sbjct: 538 EAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVT 597

Query: 414 DGL 416
           D L
Sbjct: 598 DML 600



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 111/254 (43%), Gaps = 34/254 (13%)

Query: 280 LSYCSIINSLCKDVLV----DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
           LSY      L ++ L+    D+A +LF +M      P +V +S L+     M + D    
Sbjct: 27  LSYDGYREKLSRNALLHLKLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVIS 86

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSC----- 386
               +E  G   +  +YN +IN   +  ++  AL++ G+M+ +G  P     NS      
Sbjct: 87  FGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFC 146

Query: 387 ----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
               I EA  L   +    ++ D   F  LV GL +  +   A  L +++   G +P++V
Sbjct: 147 HGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLV 206

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEEL 502
           TY  +I GLC  G         PD+         A+ LL+KM K  ++ D +  S + + 
Sbjct: 207 TYGAVINGLCKRGE--------PDL---------ALNLLNKMEKGKIEADVVIYSTVIDS 249

Query: 503 LNKDENCHECMNLL 516
           L K  +  + +NL 
Sbjct: 250 LCKYRHVDDALNLF 263


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 151/543 (27%), Positives = 246/543 (45%), Gaps = 117/543 (21%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L DA+  F+ M+  +P P +  FN L+G +   +     I L +++    +  D  S NI
Sbjct: 58  LEDAIDLFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYSFNI 117

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ----------------- 170
           L+ CFC    +  A    G+I +  F PDVVT   L+ GLC++                 
Sbjct: 118 LIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQMCRPN 177

Query: 171 --------------GKFTEASGLFTKFVAFDCRPNVI----------------------- 193
                         G+  EA  L  + V    +PN I                       
Sbjct: 178 VVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLR 237

Query: 194 ---------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
                    PNV+ Y++IIDGL KDG  +    L+ +M+ +GI+PD F YN +I  +C +
Sbjct: 238 KMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSS 297

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
             W +A+       E+ E  +N          P+V++Y ++IN+  K+    +A+EL+ +
Sbjct: 298 GRWSEAQ---RLLQEMLERKIN----------PNVVTYSALINAYVKERKFFEAEELYDE 344

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M  RGIIP+ + Y+S+IDG+C   R+D A  +F  + ++GC PD  ++NTLI+ Y   ++
Sbjct: 345 MLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKR 404

Query: 365 VEEALSLYGEMISMGVRPDNS---------CIL----EAAELFRTLHNTKFELDLTVFNC 411
           +++   L  EM   G+  D +         C++     A +L + + ++    D+   N 
Sbjct: 405 IDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNT 464

Query: 412 LVDGLCKSWRLRSAWELFKKL-----------PRYGPEPNVVTYTVMICGLCIEGGIEKA 460
           L+DGLC + +L+ A E+FK +           P  G EP+V TY ++I GL  EG     
Sbjct: 465 LLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEG----- 519

Query: 461 YDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
                       + L+A EL  +M  R + P+ IT S +   L K     E   +  S  
Sbjct: 520 ------------KFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMG 567

Query: 521 SRN 523
           S++
Sbjct: 568 SKS 570



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 113/461 (24%), Positives = 201/461 (43%), Gaps = 100/461 (21%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           M H++P   +  +++++  L     + +   L   +   G+ PD  + N +++ FC    
Sbjct: 242 MSHIKPNVVI--YSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGR 299

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
            S+A   L  +L +  +P+VVT   LI     + KF EA  L+ + +       +IPN I
Sbjct: 300 WSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLP----RGIIPNTI 355

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK------ 251
            Y S+IDG CK   ++    +F  M  +G  PD F +N+LI  YC A   +D        
Sbjct: 356 TYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEM 415

Query: 252 ----------------------GNTSAALELHEEFVNG------------------NGEL 271
                                 G+ +AAL+L ++ ++                   NG+L
Sbjct: 416 TETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKL 475

Query: 272 ------------------------GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
                                   GV   PDV +Y  +I+ L  +    +A+EL+ +M  
Sbjct: 476 KDALEMFKAMQKSKMDLDASRPFNGV--EPDVQTYNILISGLINEGKFLEAEELYKEMPH 533

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           RGI+P+ + YSS+I+G C   R+D+A ++F S+ S+   PD  ++NTL++ Y K  +V++
Sbjct: 534 RGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDD 593

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
            L L+ EM   G+                        D   +  L+ G  K   +  A +
Sbjct: 594 GLELFCEMGRRGIVA----------------------DAITYITLIHGFRKVGNINGALD 631

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +F+++   G  P+ +T   M+  L  +  +++A  +L D++
Sbjct: 632 IFQEMISSGVYPDTITIRSMLTVLWSKEELKRAVAMLEDLQ 672



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 103/228 (45%), Gaps = 36/228 (15%)

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           L  G+  +  ++DA  LF  +     +P    +N L+    ++E+ +  +SLY +M    
Sbjct: 48  LRSGFHEIKGLEDAIDLFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQ 107

Query: 380 VRPDN-------SCILEAAEL------FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           +  D         C    ++L      F  +    F+ D+  F+ L+ GLC   R+  A 
Sbjct: 108 IPCDVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEAL 167

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE----------------- 469
           +LF ++ R    PNVVT+T ++ GLC EG + +A  LL  M E                 
Sbjct: 168 DLFHQMCR----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGM 223

Query: 470 -KIRECLKAIELLHKMAK-RYVKPDEITVSILEELLNKDENCHECMNL 515
            KI + + A+ LL KM +  ++KP+ +  S + + L KD    +  NL
Sbjct: 224 CKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNL 271


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 151/532 (28%), Positives = 247/532 (46%), Gaps = 68/532 (12%)

Query: 27  PISLNSENEPSSLHSNSVSTVEEKTKLLKYLS-ENSKSGEVELNDALCFFNYMIHMQPTP 85
           P   +S     + H N +     K   + Y S   +     ++ DA   F+ ++   PTP
Sbjct: 15  PKKFHSFQFLKNTHFNFIPYSSSKINFIPYSSISTTFHNNNDVVDAFSLFSRLLRQNPTP 74

Query: 86  FMPSFNSLLGALAGKKYYVNFICLSERL----------------NTIGLLPDFVSLNILM 129
               FN +LG+L   K+Y   + LS+++                  +G  P+ ++   L+
Sbjct: 75  PAIEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPVLFHFQHPHQLMGYHPNTITFTTLI 134

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
              C    +  A +    ++   F  D V  G LI GLC  G+   A  L  +       
Sbjct: 135 KGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDLLRR-----VD 189

Query: 190 PNVI-PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
            N++ PNV+ Y++IIDG+CKD  VN    L+ +M  +GI P+   Y++LI  +      +
Sbjct: 190 GNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLK 249

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
           DA       ++L  + +  N        PDV ++  +++  CKD  + + K +F  M  +
Sbjct: 250 DA-------IDLFNKMILEN------IKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQ 296

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           GI P+VV Y SL+DGYCL+  ++ A+ +  ++   G  PD  SYN LI+ + KI+KV+EA
Sbjct: 297 GIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEA 356

Query: 369 LSLYGEMISMGVRPD----NSC---------ILEAAELFRTLHNTKFELDLTVFNCLVDG 415
           ++L+ EM    + PD    NS          I  A +L   +H+     D+  ++ ++D 
Sbjct: 357 MNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDA 416

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL 475
           LCK+ ++  A  L  KL   G  PN+ TYT++I GLC  G +E A+++  D+  K     
Sbjct: 417 LCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNIT 476

Query: 476 ------------------KAIELLHKMAKRYVKPDEITVS-ILEELLNKDEN 508
                             +A+ LL KM      PD +T   I+  L +KDEN
Sbjct: 477 VNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRSLFDKDEN 528



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 161/349 (46%), Gaps = 53/349 (15%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            +NDA   ++ M+    +P + ++++L+          + I L  ++    + PD  + N
Sbjct: 212 HVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFN 271

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           IL++ FCK   + +       ++++   P+VVT   L+ G C+  +  +A  +       
Sbjct: 272 ILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTM--- 328

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             +  V P++  Y  +IDG CK   V++   LF +M  + I PD   YNSLI   C    
Sbjct: 329 -SQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLC---- 383

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G  S AL+L +E      + GV   PD+++Y SI+++LCK+  VDKA  L   +K
Sbjct: 384 ---KLGKISYALKLVDEM----HDRGV--PPDIITYSSILDALCKNHQVDKAIALLTKLK 434

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG---------------------- 344
            +GI P++  Y+ LIDG C  GR++DA  +F  +  +G                      
Sbjct: 435 DQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFD 494

Query: 345 -------------CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
                        CIPD  +Y  +I S    ++ ++A  L  EMI+ G+
Sbjct: 495 EALALLSKMKDNSCIPDAVTYEIIIRSLFDKDENDKAEKL-REMITRGL 542



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 159/358 (44%), Gaps = 72/358 (20%)

Query: 175 EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI------- 227
           +A  LF++ +    R N  P  I +  I+  L K    + V  L   M+  GI       
Sbjct: 59  DAFSLFSRLL----RQNPTPPAIEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPVLFHF 114

Query: 228 ---------YPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD 278
                    +P+   + +LI+  C        KG    AL  H+  V    +L      D
Sbjct: 115 QHPHQLMGYHPNTITFTTLIKGLCL-------KGQIHQALLFHDNVVAMGFQL------D 161

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
            + Y ++I+ LCK      A +L   +    + P+VV+YS++IDG C    ++DA  L+ 
Sbjct: 162 QVGYGTLIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYS 221

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398
            + S+G  P+  +Y+ LI+ +  + ++++A+ L+ +MI   ++PD               
Sbjct: 222 EMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPD--------------- 266

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
                  +  FN LVDG CK  +++    +F  + + G +PNVVTY  ++ G C+     
Sbjct: 267 -------VYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCL----- 314

Query: 459 KAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                       ++E  KA  +L+ M++R V PD  + +IL +   K +   E MNL 
Sbjct: 315 ------------VKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLF 360



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/213 (21%), Positives = 86/213 (40%), Gaps = 29/213 (13%)

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
           + + YSS+   +     + DA  LF  +  +   P    +N ++ S  K +     LSL 
Sbjct: 40  NFIPYSSISTTFHNNNDVVDAFSLFSRLLRQNPTPPAIEFNKILGSLVKSKHYHTVLSLS 99

Query: 373 GEMISMGVRPDNSCILEAAELFRTLHNTK---FELDLTVFNCLVDGLCKSWRLRSAWELF 429
            +M   G+ P          LF   H  +   +  +   F  L+ GLC   ++  A    
Sbjct: 100 QQMEFEGINP---------VLFHFQHPHQLMGYHPNTITFTTLIKGLCLKGQIHQALLFH 150

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYV 489
             +   G + + V Y  +I GLC                 K+ E   A++LL ++    V
Sbjct: 151 DNVVAMGFQLDQVGYGTLIHGLC-----------------KVGETRAALDLLRRVDGNLV 193

Query: 490 KPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
           +P+ +  S + + + KD++ ++  +L    +S+
Sbjct: 194 QPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSK 226


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 132/416 (31%), Positives = 209/416 (50%), Gaps = 52/416 (12%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGC---------LIRGL 167
           GL PD  + NIL+NC C +  V++   A+  I+R+ + PD+VT            LI  L
Sbjct: 5   GLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDIL 64

Query: 168 CMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI 227
           C +GK  EA+ L    +   C    I +++ Y+++I GLC +  +++   LF+ M+  G 
Sbjct: 65  CKEGKVIEANELLEVMIQRGC----ILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGC 120

Query: 228 YPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIIN 287
            PDA  Y +L++  C         GN + AL+LH+E +N  G  G+ C P ++SY  II+
Sbjct: 121 RPDAITYGTLMKGLC-------QTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIID 173

Query: 288 SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
            LCKD   D+A+ELF +MK++G++PDV+ Y+SLI G+C  G+ + A+ LF  +   G  P
Sbjct: 174 GLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQP 233

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLT 407
           D ++   LI+ + K  KV EA  L   M+  G      CI                LD+ 
Sbjct: 234 DVTTSGVLIDMFCKEGKVIEANELLEVMVHRG------CI----------------LDIV 271

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            ++ L+ GLC   R+  A +LF  + + G  P+ + Y  ++ GLC  G I  A  L  +M
Sbjct: 272 TYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEM 331

Query: 468 EEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
                +             + ++PD  T S+L ++L K+    E   LL   + R 
Sbjct: 332 LNDTSQ----------YGIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRG 377



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 134/439 (30%), Positives = 215/439 (48%), Gaps = 66/439 (15%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           ++A   F  M      P + S+ +L+        +    CL   +  +G+ PD  + ++L
Sbjct: 475 DEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVL 534

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           ++  CK   V +A   L  ++++    DVVT   L++GLCM+ + ++A+ LF K     C
Sbjct: 535 IDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGC 594

Query: 189 RPNVI-------------------------------------PNVICYASIIDGLCKDGF 211
            PNV+                                     PN I Y+ IIDGLCK G 
Sbjct: 595 MPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGR 654

Query: 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGEL 271
            ++ R LF +MK  G+ PD   Y SLI  +C +  W+DAK        L  E V+    +
Sbjct: 655 EDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAK-------YLFNEMVD----I 703

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
           GV   PDV ++  +I+ LCK+  V +A EL   M  RG IP+ V Y++L+ G C+  RI 
Sbjct: 704 GV--QPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRIS 761

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAA 391
           +A +LF+ ++  GC+PD  +Y TL+    +   ++ AL L+ +M+S           +  
Sbjct: 762 EATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLS-----------DTG 810

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
           +     + T F+ D+  ++ ++DGLCK  R   A ELFK++   G  PNV++YT +I G 
Sbjct: 811 Q-----YGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGF 865

Query: 452 CIEGGIEKAYDLLPDMEEK 470
           C  G +E A  L  +M ++
Sbjct: 866 CRSGKLEDAKHLFNEMVDQ 884



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 134/414 (32%), Positives = 206/414 (49%), Gaps = 44/414 (10%)

Query: 62  KSGEV-ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           K G+V E N+ L     M+H      + ++++L+  L  K        L   +  +G  P
Sbjct: 247 KEGKVIEANELL---EVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRP 303

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILR-------KVFSPDVVTLGCLIRGLCMQGKF 173
           D ++   LM   C+   ++ A      +L        K   PDV T   LI  LC +GK 
Sbjct: 304 DAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKV 363

Query: 174 TEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233
            EA+ L    +   C    I +++ Y+++I GLC +  +++   LF+ M+  G  PDA  
Sbjct: 364 IEANELLEVMIQRGC----ILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAIT 419

Query: 234 YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDV 293
           Y +L++  C         GN + AL+LH+E +N  G  G+ C P ++SY  II+ LCKD 
Sbjct: 420 YGTLMKGLC-------QTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDR 472

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353
             D+A+ELF +MK++GI+PDV+ Y++LI G+CL G+ + A+ LF  +   G  PD ++ +
Sbjct: 473 REDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSS 532

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLV 413
            LI+   K  KV EA  L   +I  G      CI                LD+     LV
Sbjct: 533 VLIDMLCKKGKVIEANKLLEVVIQRG------CI----------------LDVVTCTTLV 570

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            GLC   R+  A +LF K+ + G  PNVVT   ++ GLC  G I+ A +L  +M
Sbjct: 571 KGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNM 624



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 129/411 (31%), Positives = 206/411 (50%), Gaps = 32/411 (7%)

Query: 77  YMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMI 136
           Y I  +PT  + S++ ++  L   +       L E +   G++PD +S   L++ FC   
Sbjct: 450 YGIKCKPT--LISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSG 507

Query: 137 GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNV 196
               A      +L     PDV T   LI  LC +GK  EA+ L    +   C    I +V
Sbjct: 508 KWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGC----ILDV 563

Query: 197 ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSA 256
           +   +++ GLC    ++K   LFL M+  G  P+     +L++  C         GN   
Sbjct: 564 VTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLC-------QSGNIKI 616

Query: 257 ALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV 316
           ALELH+  ++     G+ C P+ +SY  II+ LCK    D+A+ELF +MK+ G+IPDV+ 
Sbjct: 617 ALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVIS 676

Query: 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
           Y+SLI G+C  G+  DA+ LF  +   G  PD ++++ LI+   K  KV EA  L   MI
Sbjct: 677 YTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMI 736

Query: 377 SMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLR 423
             G  P+             N  I EA +LF  +       D+  +  L+ GLC++  ++
Sbjct: 737 QRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIK 796

Query: 424 SAWELFKKL----PRYGP--EPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +A EL KK+     +YG   +P+V++Y+++I GLC  G  ++A +L  +M+
Sbjct: 797 TALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMK 847



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 87/261 (33%), Positives = 146/261 (55%), Gaps = 11/261 (4%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L + +  +G++PD +S   L++ FC+     DA      ++     PDV T   LI  LC
Sbjct: 661 LFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLC 720

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
            +GK  EA+ L    +   C    IPN + Y +++ GLC +  +++   LF+ M+  G  
Sbjct: 721 KEGKVIEANELLEVMIQRGC----IPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCL 776

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           PD   Y +L++  C         GN   ALELH++ ++  G+ G    PDV+SY  II+ 
Sbjct: 777 PDVVTYGTLMKGLC-------QTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDG 829

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           LCK    D+A+ELF +MK+ G+IP+V+ Y+SLI G+C  G+++DA+ LF  +  +G   +
Sbjct: 830 LCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLN 889

Query: 349 TSSYNTLINSYSKIEKVEEAL 369
             +Y+ +I+ + K  ++++AL
Sbjct: 890 AVTYSVMIHGFCKEGQIDKAL 910



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 142/302 (47%), Gaps = 37/302 (12%)

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
           M+  G++PD+F +N LI   C      +  G  + A  +   ++       +   PDV +
Sbjct: 1   MRLAGLFPDSFTFNILINCLCNVKRVNE--GLAAMAGIMRRGYIPDIVTYSI--RPDVTT 56

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
              +I+ LCK+  V +A EL   M  RG I D+V YS+LI G C+  RI +A  LF+S++
Sbjct: 57  SSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQ 116

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK 401
             GC PD  +Y TL+    +   +  AL L+ EM++   R                +  K
Sbjct: 117 KLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGR----------------YGIK 160

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
            +  L  ++ ++DGLCK  R   A ELFK++   G  P+V++YT +I G C  G  EKA 
Sbjct: 161 CKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKA- 219

Query: 462 DLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
                      +C     L ++M    ++PD  T  +L ++  K+    E   LL   + 
Sbjct: 220 -----------KC-----LFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVH 263

Query: 522 RN 523
           R 
Sbjct: 264 RG 265



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 124/276 (44%), Gaps = 52/276 (18%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           ++A   F  M  +   P + S+ SL+        + +   L   +  IG+ PD  + ++L
Sbjct: 656 DEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVL 715

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           ++  CK   V +A   L  ++++   P+ VT   L++GLCM  + +EA+ LF K     C
Sbjct: 716 IDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGC 775

Query: 189 RPNVI-------------------------------------PNVICYASIIDGLCKDGF 211
            P+V+                                     P+VI Y+ IIDGLCK G 
Sbjct: 776 LPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGR 835

Query: 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGEL 271
            ++ R LF +MK  G+ P+   Y SLI  +C +   EDAK        L  E V+   +L
Sbjct: 836 EDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAK-------HLFNEMVDQGVQL 888

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
                 + ++Y  +I+  CK+  +DKA  LF  M++
Sbjct: 889 ------NAVTYSVMIHGFCKEGQIDKA--LFQKMEA 916


>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 141/463 (30%), Positives = 239/463 (51%), Gaps = 38/463 (8%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +++DA+  FN ++   PTP    FN +LG+L   K+Y   + LS+++   G+ P+  + N
Sbjct: 66  DVDDAVSLFNRLLRQNPTPPAFEFNKILGSLVKSKHYHTVLSLSQKMEFRGIKPNLFNCN 125

Query: 127 ILMNCFCKM----IGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           IL+ CFC++      +  AF+   +++   F  D V+ G LI GLC  G+   A  L  +
Sbjct: 126 ILIYCFCQLGLIPCQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQR 185

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
               D +  V  N + Y ++I G+CKD  VN    L+ +M  +GI P+   Y++LI  + 
Sbjct: 186 V---DGKL-VQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFF 241

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
                +DA       ++L  + +  N        PD  ++  +++  CKD  + + K +F
Sbjct: 242 VVGKLKDA-------IDLFNKIILEN------IKPDGYTFNILVDGFCKDRKMKEGKTVF 288

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
             M  +GIIPDVV Y+SL+DGYCL+  ++ A+ +F ++   G  PD  SYN LIN + KI
Sbjct: 289 AMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKI 348

Query: 363 EKVEEALSLYGEMISMGVRPD----NSC---------ILEAAELFRTLHNTKFELDLTVF 409
           +KV++A++L+ EM    + P+    NS          I  A +L   +H+     ++  +
Sbjct: 349 KKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTY 408

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE---KAYDLLPD 466
           N ++D L K+ ++  A  L  K    G +P++ TYT++I GLC   G +     Y+++  
Sbjct: 409 NSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKVEGYDITVNTYNVMIH 468

Query: 467 MEEKIRECLKAIELLHKMAKRYVKPDEITVSI-LEELLNKDEN 508
              K     +A+ LL KM      P+ +T  I +  LL+ +EN
Sbjct: 469 GFCKKGLFDEALSLLSKMKDSSCIPNAVTYEITIRSLLDNNEN 511



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 110/354 (31%), Positives = 166/354 (46%), Gaps = 37/354 (10%)

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           V  N ++   CK   V+DAF     ++ K  SP+VVT   LI G  + GK  +A  LF K
Sbjct: 196 VMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNK 255

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
            +      N+ P+   +  ++DG CKD  + + + +F  M  +GI PD   YNSL+  YC
Sbjct: 256 IIL----ENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYC 311

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
                  AK              N   + GV  +PD+ SY  +IN  CK   VDKA  LF
Sbjct: 312 LVKEVNTAK-----------SIFNTMAQGGV--NPDIRSYNILINGFCKIKKVDKAMNLF 358

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
            +M  + IIP+VV Y+SLIDG    GRI  A +L   +   G  P+  +YN++I++  K 
Sbjct: 359 NEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKT 418

Query: 363 EKVEEALSLYGEMISMGVRP---------DNSCILEAAELFRTLHNTKFELDLTVFNCLV 413
            +V++A++L  +    G++P         D  C +E            +++ +  +N ++
Sbjct: 419 HQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKVEG-----------YDITVNTYNVMI 467

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            G CK      A  L  K+      PN VTY + I  L      +KA  L  +M
Sbjct: 468 HGFCKKGLFDEALSLLSKMKDSSCIPNAVTYEITIRSLLDNNENDKAEKLFREM 521



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 153/334 (45%), Gaps = 37/334 (11%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            +NDA   ++ M+    +P + ++++L+          + I L  ++    + PD  + N
Sbjct: 210 HVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFN 269

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           IL++ FCK   + +       ++++   PDVVT   L+ G C+  +   A  +F      
Sbjct: 270 ILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTM--- 326

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             +  V P++  Y  +I+G CK   V+K   LF +M  + I P+   YNSLI       +
Sbjct: 327 -AQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLI-------D 378

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G  S AL+L    V+   + GV   P++L+Y SII++L K   VDKA  L    K
Sbjct: 379 GLSKSGRISYALQL----VDQMHDRGV--PPNILTYNSIIDALFKTHQVDKAIALITKFK 432

Query: 307 SRGIIPDVVVYSSLIDG--------------------YCLMGRIDDARKLFVSIESEGCI 346
            +GI P +  Y+ LIDG                    +C  G  D+A  L   ++   CI
Sbjct: 433 DQGIQPSMYTYTILIDGLCKVEGYDITVNTYNVMIHGFCKKGLFDEALSLLSKMKDSSCI 492

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           P+  +Y   I S     + ++A  L+ EMI+ G+
Sbjct: 493 PNAVTYEITIRSLLDNNENDKAEKLFREMITRGL 526



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 153/349 (43%), Gaps = 52/349 (14%)

Query: 175 EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVY 234
           +A  LF + +    R N  P    +  I+  L K    + V  L   M+ RGI P+ F  
Sbjct: 69  DAVSLFNRLL----RQNPTPPAFEFNKILGSLVKSKHYHTVLSLSQKMEFRGIKPNLFNC 124

Query: 235 NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294
           N LI  +C                ++H+ F+  +  + +  H D +SY ++I+ LCK   
Sbjct: 125 NILIYCFCQL---------GLIPCQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGE 175

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
              A +L   +  + +  + V+Y+++I G C    ++DA  L+  + S+G  P+  +Y+ 
Sbjct: 176 TRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSA 235

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           LI+ +  + K+++A+ L+ ++I   ++PD                         FN LVD
Sbjct: 236 LISGFFVVGKLKDAIDLFNKIILENIKPDG----------------------YTFNILVD 273

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC 474
           G CK  +++    +F  + + G  P+VVTY  ++ G C+                 ++E 
Sbjct: 274 GFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCL-----------------VKEV 316

Query: 475 LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
             A  + + MA+  V PD  + +IL     K +   + MNL      +N
Sbjct: 317 NTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKN 365



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 131/301 (43%), Gaps = 27/301 (8%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L DA+  FN +I     P   +FN L+      +       +   +   G++PD V+ N
Sbjct: 245 KLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYN 304

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            LM+ +C +  V+ A      + +   +PD+ +   LI G C   K  +A  LF +    
Sbjct: 305 SLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEM--- 361

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI-------- 238
            C+ N+IPNV+ Y S+IDGL K G ++    L   M  RG+ P+   YNS+I        
Sbjct: 362 HCK-NIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQ 420

Query: 239 --RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD-----VLSYCSIINSLCK 291
             +       ++D       ++  +   ++G      +C  +     V +Y  +I+  CK
Sbjct: 421 VDKAIALITKFKDQ--GIQPSMYTYTILIDG------LCKVEGYDITVNTYNVMIHGFCK 472

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
             L D+A  L   MK    IP+ V Y   I         D A KLF  + + G +  ++S
Sbjct: 473 KGLFDEALSLLSKMKDSSCIPNAVTYEITIRSLLDNNENDKAEKLFREMITRGLLNRSAS 532

Query: 352 Y 352
           Y
Sbjct: 533 Y 533



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 95/234 (40%), Gaps = 35/234 (14%)

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
           + + YSS    +     +DDA  LF  +  +   P    +N ++ S  K +     LSL 
Sbjct: 50  NFISYSSTSTTFHSNNDVDDAVSLFNRLLRQNPTPPAFEFNKILGSLVKSKHYHTVLSLS 109

Query: 373 GEMISMGVRPD----------------NSCILEAAELFR-TLHNTKFELDLTVFNCLVDG 415
            +M   G++P+                  C +  A LF   L    F LD   +  L+ G
Sbjct: 110 QKMEFRGIKPNLFNCNILIYCFCQLGLIPCQIHQAFLFHDKLVALGFHLDQVSYGTLIHG 169

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK----- 470
           LCK    R+A +L +++     + N V Y  +I G+C +  +  A+DL  +M  K     
Sbjct: 170 LCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPN 229

Query: 471 -------------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHE 511
                        + +   AI+L +K+    +KPD  T +IL +   KD    E
Sbjct: 230 VVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKE 283


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score =  212 bits (539), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 154/519 (29%), Positives = 248/519 (47%), Gaps = 78/519 (15%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            ++ AL  F  MI  +  P +  FN +L + A  K+Y   + LS RL   G+ PD  +LN
Sbjct: 288 RVDKALNLFKEMILSRFPPII-QFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLN 346

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           IL+NCFC M  ++  F  L +IL++ + P  VTL  LI+GLC++G+  +A     K +A 
Sbjct: 347 ILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQ 406

Query: 187 DCRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKV 215
             + N +                               PNV  Y++IID LCK   V++ 
Sbjct: 407 GFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEA 466

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
             LF +M  +GI  D   Y++LI  +C         G    A+ L  E V     L  I 
Sbjct: 467 YGLFSEMTVKGISADVVTYSTLIYGFCIV-------GKLKEAIGLLNEMV-----LKTI- 513

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
           +PDV +Y  ++++L K+  V +AK +   M    + PDV  Y++L++GY L+  +  A+ 
Sbjct: 514 NPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQH 573

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---SCILEAA- 391
           +F ++   G  PD  +Y  LIN + K + V+EAL+L+ EM    + PD    S +++   
Sbjct: 574 VFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLC 633

Query: 392 ---------ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
                    +L   + +     D+  +N L+DGLCK+  L  A  LF K+   G  PN  
Sbjct: 634 KSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTF 693

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEEK----------------IRECL--KAIELLHKM 484
           T+T+++ GLC  G ++ A ++  D+  K                 ++ L  +A+ +L KM
Sbjct: 694 TFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKM 753

Query: 485 AKRYVKPDEITVS-ILEELLNKDENCHECMNLLPSFLSR 522
            +    P+ +T   I+  L  KDEN  +   LL   ++R
Sbjct: 754 EENGCIPNAVTFDIIINALFKKDEN-DKAEKLLRQMIAR 791



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 118/421 (28%), Positives = 197/421 (46%), Gaps = 75/421 (17%)

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI---------- 193
            L +IL++ + PD VTL  LI+GLC++G+  EA     K +A   + N +          
Sbjct: 50  VLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVC 109

Query: 194 ---------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
                                PNV  Y +IID LCK   V++   LF +M  +GI  +  
Sbjct: 110 RIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVV 169

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            Y++LI  +C     ++A G  +  +            L  I +P+V +Y  ++++LCK+
Sbjct: 170 TYSTLIYGFCIVGKLKEALGLLNVMV------------LKTI-NPNVCTYNILVDALCKE 216

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             V +AK +   M    +  +V+ YS+L+DGY L+  +  A+ +F ++   G  PD  SY
Sbjct: 217 GKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSY 276

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRP--DNSCILE----------AAELFRTLHNT 400
           N +IN + KI++V++AL+L+ EMI     P    + IL+          A  L   L   
Sbjct: 277 NIMINGFCKIKRVDKALNLFKEMILSRFPPIIQFNKILDSFAKMKHYSTAVSLSHRLELK 336

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
             + DL   N L++  C   ++   + +  K+ + G  P+ VT   +I GLC++G ++KA
Sbjct: 337 GIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKA 396

Query: 461 ------------------YDLLPDMEEKIRECLKAIELLHKMAKRYVKPD-EITVSILEE 501
                             Y  L +   KI +   AI+LL K+  R  KP+ E+  +I++ 
Sbjct: 397 LHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDA 456

Query: 502 L 502
           L
Sbjct: 457 L 457



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 111/449 (24%), Positives = 199/449 (44%), Gaps = 48/449 (10%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P +  +N+++ AL   +       L   +   G+  + V+ + L+  FC +  + +A   
Sbjct: 131 PNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGL 190

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           L  ++ K  +P+V T   L+  LC +GK  EA  +    +A   +  V  NVI Y++++D
Sbjct: 191 LNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSV----LAVMLKACVKSNVITYSTLMD 246

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           G      V K + +F  M   G+ PD   YN +I  +C              AL L +E 
Sbjct: 247 GYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFC-------KIKRVDKALNLFKEM 299

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           +           P ++ +  I++S  K      A  L   ++ +GI PD+   + LI+ +
Sbjct: 300 ILSR-------FPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCF 352

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           C MG+I     +   I   G  P T + NTLI       +V++AL  + ++++ G + + 
Sbjct: 353 CHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQ 412

Query: 385 SCILE-------------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
                             A +L R +     + ++ +++ ++D LCK   +  A+ LF +
Sbjct: 413 VSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSE 472

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKP 491
           +   G   +VVTY+ +I G CI G              K++E   AI LL++M  + + P
Sbjct: 473 MTVKGISADVVTYSTLIYGFCIVG--------------KLKE---AIGLLNEMVLKTINP 515

Query: 492 DEITVSILEELLNKDENCHECMNLLPSFL 520
           D  T +IL + L K+    E  ++L   L
Sbjct: 516 DVRTYTILVDALGKEGKVKEAKSVLAVML 544



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 158/320 (49%), Gaps = 29/320 (9%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL------P 120
           +L +A+   N M+     P + ++  L+ AL GK+  V      E  + + ++      P
Sbjct: 497 KLKEAIGLLNEMVLKTINPDVRTYTILVDAL-GKEGKV-----KEAKSVLAVMLKACVKP 550

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           D  + N LMN +  +  V  A      +     +PDV T   LI G C      EA  LF
Sbjct: 551 DVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLF 610

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            +      + N++P+ + Y+S++DGLCK G ++ V  L  +M+ RG   D   YNSLI  
Sbjct: 611 KEM----HQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDG 666

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
            C         G+   A+ L     N   + G+   P+  ++  +++ LCK   +  A+E
Sbjct: 667 LC-------KNGHLDKAIALF----NKMKDQGI--RPNTFTFTILLDGLCKGGRLKDAQE 713

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           +F D+ ++G   DV +Y+ +I G+C  G +++A  +   +E  GCIP+  +++ +IN+  
Sbjct: 714 VFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAVTFDIIINALF 773

Query: 361 KIEKVEEALSLYGEMISMGV 380
           K ++ ++A  L  +MI+ G+
Sbjct: 774 KKDENDKAEKLLRQMIARGL 793



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 143/641 (22%), Positives = 245/641 (38%), Gaps = 139/641 (21%)

Query: 9   SRTAFKVKPSSSLRNSKKPISLNSENEPSSLHSNSVSTVEEKTKL---LKYLSENSKSGE 65
           S+T+  +   ++ +NS+ P  L   + P      S+  V++   L    K L        
Sbjct: 4   SKTSSVISSPTTSQNSQSPTPLKDCDSPPFFLPPSIQNVDDAVSLSVLTKILKRGYPPDT 63

Query: 66  VELN-------------DALCFFNYMIHMQPTPFMPSFNSLLGA---LAGKKYYVNFICL 109
           V LN             +AL F + ++         S+ +L+     +   +  + F+  
Sbjct: 64  VTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGDTRAAIKFL-- 121

Query: 110 SERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCM 169
             +++     P+    N +++  CK   VS+A+     +  K  S +VVT   LI G C+
Sbjct: 122 -RKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCI 180

Query: 170 QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYP 229
            GK  EA GL    V       + PNV  Y  ++D LCK+G V + + +   M    +  
Sbjct: 181 VGKLKEALGLLNVMVL----KTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKS 236

Query: 230 DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSL 289
           +   Y++L+  Y      + A           +   N    +GV   PDV SY  +IN  
Sbjct: 237 NVITYSTLMDGYFLVYEVKKA-----------QHVFNAMSLMGVT--PDVHSYNIMINGF 283

Query: 290 CKDVLVDKAKELFLDM----------------------------------KSRGIIPDVV 315
           CK   VDKA  LF +M                                  + +GI PD+ 
Sbjct: 284 CKIKRVDKALNLFKEMILSRFPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLF 343

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
             + LI+ +C MG+I     +   I   G  P T + NTLI       +V++AL  + ++
Sbjct: 344 TLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKL 403

Query: 376 ISMGVRPDNSCILE-------------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRL 422
           ++ G + +                   A +L R +     + ++ +++ ++D LCK   +
Sbjct: 404 LAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLV 463

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM--------------- 467
             A+ LF ++   G   +VVTY+ +I G CI G +++A  LL +M               
Sbjct: 464 SEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTIL 523

Query: 468 ------EEKIRE-----------CLK---------------------AIELLHKMAKRYV 489
                 E K++E           C+K                     A  + + M+   V
Sbjct: 524 VDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGV 583

Query: 490 KPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
            PD  T +IL     K +   E +NL      +N     +T
Sbjct: 584 TPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVT 624



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 110/235 (46%), Gaps = 19/235 (8%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           ++ +G+ PD  +  IL+N FCK   V +A      + +K   PD VT   L+ GLC  G+
Sbjct: 578 MSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGR 637

Query: 173 FTEASGLFTKFVAFDCRPNVIP-NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
            +    L  +      R    P +VI Y S+IDGLCK+G ++K   LF  MK +GI P+ 
Sbjct: 638 ISYVWDLIDEM-----RDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNT 692

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
           F +  L+   C     +DA+       E+ ++ +          H DV  Y  +I   CK
Sbjct: 693 FTFTILLDGLCKGGRLKDAQ-------EVFQDLLTKG------YHLDVYIYNVMIYGHCK 739

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
             L+++A  +   M+  G IP+ V +  +I+        D A KL   + + G +
Sbjct: 740 QGLLEEALTMLSKMEENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIARGLL 794


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 149/541 (27%), Positives = 247/541 (45%), Gaps = 130/541 (24%)

Query: 66  VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
           ++ +DA+  F  MI  +P P +  FN L  A+A  K Y   + L +++ + G+     +L
Sbjct: 67  IKADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTL 126

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVV--------------------------- 158
           +I++NCFC+   +S AF  +G+I++  + PD V                           
Sbjct: 127 SIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVE 186

Query: 159 --------TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP-----NVIC------- 198
                   TL  L+ GLC+ GK ++A  L  + V    +PN +      NV+C       
Sbjct: 187 MGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTAL 246

Query: 199 -------------------YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
                              Y+ IIDGLCKDG ++    LF +M+ +G   D   YN+LI 
Sbjct: 247 AMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIG 306

Query: 240 VYCCAVNWEDA----------------------------KGNTSAALELHEEFVNGNGEL 271
            +C A  W+D                             +G    A +L +E +    + 
Sbjct: 307 GFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMM----QR 362

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
           G+   P+ ++Y S+I+  CK+  +++A ++   M S+G  PD++ ++ LI+GYC   RID
Sbjct: 363 GI--APNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRID 420

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP--------- 382
           D  +LF  +   G I +T +YNTL+  + +  K+E A  L+ EM+S  VRP         
Sbjct: 421 DGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILL 480

Query: 383 ----DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
               DN  + +A E+F  +  +K ELD+ ++  ++ G+C + ++  AW+LF  LP  G +
Sbjct: 481 DGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVK 540

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSI 498
            +   Y +MI  LC +  + KA D+                L  KM +    PDE+T +I
Sbjct: 541 LDARAYNIMISELCRKDSLSKA-DI----------------LFRKMTEEGHAPDELTYNI 583

Query: 499 L 499
           L
Sbjct: 584 L 584



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 136/319 (42%), Gaps = 17/319 (5%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           +D       MI  + +P + +F+ L+ +   +        L + +   G+ P+ ++ N L
Sbjct: 315 DDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSL 374

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           ++ FCK   + +A   +  ++ K   PD++T   LI G C   +  +   LF +      
Sbjct: 375 IDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSL--- 431

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
              VI N + Y +++ G C+ G +   + LF +M  R + PD   Y  L+   C      
Sbjct: 432 -RGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLC------ 484

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
              G    ALE+  +      EL      D+  Y  II+ +C    VD A +LF  +  +
Sbjct: 485 -DNGELEKALEIFGKIEKSKMEL------DIGIYMIIIHGMCNASKVDDAWDLFCSLPLK 537

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G+  D   Y+ +I   C    +  A  LF  +  EG  PD  +YN LI ++   +    A
Sbjct: 538 GVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTA 597

Query: 369 LSLYGEMISMGVRPDNSCI 387
             L  EM S G   D S +
Sbjct: 598 AELIEEMKSSGFPADVSTV 616



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 108/255 (42%), Gaps = 40/255 (15%)

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           LSY   ++S    +  D A +LF DM     +P V+ ++ L        + +    L   
Sbjct: 54  LSYRDKLSSGLVGIKADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQ 113

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN 399
           +ES+G      + + +IN + +  K+  A S  G+++ +G  PD                
Sbjct: 114 MESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDT--------------- 158

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
                   +FN L++GLC   R+  A EL  ++   G +P ++T   ++ GLC+ G +  
Sbjct: 159 -------VIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSD 211

Query: 460 AYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEE 501
           A  L+  M E                  K  +   A+ELL KM +R +K D +  SI+ +
Sbjct: 212 AVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIID 271

Query: 502 LLNKDENCHECMNLL 516
            L KD +     NL 
Sbjct: 272 GLCKDGSLDNAFNLF 286


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  211 bits (538), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 151/539 (28%), Positives = 244/539 (45%), Gaps = 116/539 (21%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DA+  FN ++ ++P P +  FN LLG+L  KK+Y   I L ++++   + P+  +L IL+
Sbjct: 52  DAVASFNQLLGIRPLPPVVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILI 111

Query: 130 NCFCK--MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           NC C      V  AF ALG++ +    P  VT G L+ GLC + K  +A  LF +     
Sbjct: 112 NCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMG 171

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
             P++I                               P+V+ Y ++ID LCKD   N+  
Sbjct: 172 FAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAM 231

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
             F +M  +GI P+   Y+S++  +C         G  + A  L ++ +  N        
Sbjct: 232 YFFSEMVDQGIPPNVVTYSSILHGFC-------NLGQLNEATSLFKQMIGRN------VM 278

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+ +++  +++ LCK+ ++ +A+ +F  M   G+ PD   YS+L+DGYCL  ++D+A+KL
Sbjct: 279 PNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKL 338

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS-------------------------- 370
           F  +  +G  P    YN LIN + K  ++ EA +                          
Sbjct: 339 FDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQ 398

Query: 371 ---------LYGEMISMGVRPDN---SCIL----------EAAELFRTLHNTKFELDLTV 408
                    L+ EM S G+ PD+   S +L          EA  L + +  +K E  + +
Sbjct: 399 AGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICI 458

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +N L+ G+C   +L +A ELF  L   G +P+VVTYTVMI GL  EG   +A ++   M 
Sbjct: 459 YNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKM- 517

Query: 469 EKIRECL--------------------KAIELLHKMAKRYVKPDEITVSILEELLNKDE 507
             +  CL                     A+ L+ +M  R    D  T  +L +L + DE
Sbjct: 518 -VVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLLDLESNDE 575



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 86/205 (41%), Gaps = 41/205 (20%)

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS--YSKIEKVEEA 368
           +P VVV++ L+              L   ++     P+  +   LIN   +S  + V  A
Sbjct: 66  LPPVVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHSNRDHVHFA 125

Query: 369 LSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
            S  G+M  +G++P +                        F  L++GLC   ++  A +L
Sbjct: 126 FSALGKMFKLGLQPTH----------------------VTFGTLLNGLCSKAKIIDAVKL 163

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRY 488
           F ++ + G  P+++TYT +I GLC                 KI     A++LL KM ++ 
Sbjct: 164 FDEIGKMGFAPSLITYTTIIKGLC-----------------KIGHTTNALQLLKKMEEKG 206

Query: 489 VKPDEITVSILEELLNKDENCHECM 513
            KPD +  + + + L KD   +E M
Sbjct: 207 CKPDVVAYNTVIDSLCKDRRANEAM 231


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 135/439 (30%), Positives = 216/439 (49%), Gaps = 66/439 (15%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           ++A   F  M      P + S+ +L+        +    CL   +  +G+ PD  + ++L
Sbjct: 319 DEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVL 378

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           ++  CK   V +A   L  ++++   PDVVT   L++GLCM+ + ++A+ LF K     C
Sbjct: 379 IDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGC 438

Query: 189 RPNVI-------------------------------------PNVICYASIIDGLCKDGF 211
            PNV+                                     PN I Y+ IIDGLCK G 
Sbjct: 439 MPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGR 498

Query: 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGEL 271
            ++ R LF +MK  G+ PD   Y SLI  +C +  W+DAK        L  E V+    +
Sbjct: 499 EDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAK-------YLFNEMVD----I 547

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
           GV   PDV ++  +I+ LCK+  V +A EL   M  RG IP+ V Y++L+ G C+  RI 
Sbjct: 548 GV--QPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRIS 605

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAA 391
           +A +LF+ ++  GC+PD  +Y TL+    +   ++ AL L+ +M+S           +  
Sbjct: 606 EATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLS-----------DTG 654

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
           +     + T F+ D+  ++ ++DGLCK  R   A ELFK++   G  PNV++YT +I G 
Sbjct: 655 Q-----YGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGF 709

Query: 452 CIEGGIEKAYDLLPDMEEK 470
           C  G +E A  L  +M ++
Sbjct: 710 CRSGKLEDAKHLFNEMVDQ 728



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 148/493 (30%), Positives = 240/493 (48%), Gaps = 53/493 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           LND      Y I  +PT  + S++ ++  L   +       L + +   G++PD +S   
Sbjct: 107 LNDT---SQYGIKCKPT--LVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTS 161

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++ FC+      A      +L      DV T   LI  LC +GK  EA+ L    +   
Sbjct: 162 LIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRG 221

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C    I +++ Y+++I GLC    +++   LF+ M+  G  PDA  Y +L++  C     
Sbjct: 222 C----ILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLC----- 272

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               GN + AL+LH+E +N  G  G+ C P ++SY  II+ LCKD   D+A+ELF +MK+
Sbjct: 273 --QTGNINTALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKA 330

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           +GI+PDV+ Y++LI G+CL G+ + A+ LF  +   G  PD ++ + LI+   K  KV E
Sbjct: 331 QGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIE 390

Query: 368 ALSLYGEMISMGVRPD-NSC------------ILEAAELFRTLHNTKFELDLTVFNCLVD 414
           A  L   +I  G  PD  +C            I +A +LF  +       ++     L+ 
Sbjct: 391 ANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMK 450

Query: 415 GLCKSWRLRSAWELFKKL----PRYGP--EPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           GLC+S  ++ A EL K +      YG   +PN ++Y+++I GLC  G  ++A +L  +M+
Sbjct: 451 GLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMK 510

Query: 469 E--KIRECLKAIELLH----------------KMAKRYVKPDEITVSILEELLNKDENCH 510
               I + +    L+H                +M    V+PD  T S+L ++L K+    
Sbjct: 511 ALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVI 570

Query: 511 ECMNLLPSFLSRN 523
           E   LL   + R 
Sbjct: 571 EANELLEVMIQRG 583



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 137/445 (30%), Positives = 211/445 (47%), Gaps = 83/445 (18%)

Query: 116 IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
           +G+ PD  +  +L++ FCK   V +A   L  ++++    D+VT   LI+GLCM+ + +E
Sbjct: 4   VGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISE 63

Query: 176 ASGLFTKFVAFDCRPNVI-------------------------------------PNVIC 198
           A+ LF       CRP+ I                                     P ++ 
Sbjct: 64  ATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVS 123

Query: 199 YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL 258
           Y+ IIDGLCKD   ++ R LF +MK +G+ PD   Y SLI  +C +  WE AK       
Sbjct: 124 YSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKC------ 177

Query: 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS 318
            L  E ++    +G+    DV +   +I+ LCK+  V +A EL   M  RG I D+V YS
Sbjct: 178 -LFNEMLD----VGI--RSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYS 230

Query: 319 SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
           +LI G C+  RI +A +LF+S++  GC PD  +Y TL+    +   +  AL L+ EM++ 
Sbjct: 231 TLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLND 290

Query: 379 GVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
             R                +  K +  L  ++ ++DGLCK  R   A ELFK++   G  
Sbjct: 291 TGR----------------YGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIM 334

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSI 498
           P+V++YT +I G C+ G  EKA            +C     L ++M    ++PD  T S+
Sbjct: 335 PDVISYTTLIHGFCLSGKWEKA------------KC-----LFNEMLDVGIQPDVTTSSV 377

Query: 499 LEELLNKDENCHECMNLLPSFLSRN 523
           L ++L K     E   LL   + R 
Sbjct: 378 LIDMLCKKGKVIEANKLLEVVIQRG 402



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 132/420 (31%), Positives = 210/420 (50%), Gaps = 35/420 (8%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           LND      Y I  +PT  + S++ ++  L   +       L + +   G++PD +S   
Sbjct: 288 LNDT---GRYGIKCKPT--LISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTT 342

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++ FC       A      +L     PDV T   LI  LC +GK  EA+ L    +   
Sbjct: 343 LIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRG 402

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C    IP+V+   +++ GLC    ++K   LFL M+  G  P+     +L++  C     
Sbjct: 403 C----IPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLC----- 453

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               GN   ALELH+  ++     G+ C P+ +SY  II+ LCK    D+A+ELF +MK+
Sbjct: 454 --QSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKA 511

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            G+IPDV+ Y+SLI G+C  G+  DA+ LF  +   G  PD ++++ LI+   K  KV E
Sbjct: 512 LGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIE 571

Query: 368 ALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           A  L   MI  G  P+             N  I EA +LF  +       D+  +  L+ 
Sbjct: 572 ANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMK 631

Query: 415 GLCKSWRLRSAWELFKKL----PRYGP--EPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           GLC++  +++A EL KK+     +YG   +P+V++Y+++I GLC  G  ++A +L  +M+
Sbjct: 632 GLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMK 691



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 87/261 (33%), Positives = 146/261 (55%), Gaps = 11/261 (4%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L + +  +G++PD +S   L++ FC+     DA      ++     PDV T   LI  LC
Sbjct: 505 LFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLC 564

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
            +GK  EA+ L    +   C    IPN + Y +++ GLC +  +++   LF+ M+  G  
Sbjct: 565 KEGKVIEANELLEVMIQRGC----IPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCL 620

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           PD   Y +L++  C         GN   ALELH++ ++  G+ G    PDV+SY  II+ 
Sbjct: 621 PDVVTYGTLMKGLC-------QTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDG 673

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           LCK    D+A+ELF +MK+ G+IP+V+ Y+SLI G+C  G+++DA+ LF  +  +G   +
Sbjct: 674 LCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLN 733

Query: 349 TSSYNTLINSYSKIEKVEEAL 369
             +Y+ +I+ + K  ++++AL
Sbjct: 734 AVTYSVMIHGFCKEGQIDKAL 754



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 125/253 (49%), Gaps = 33/253 (13%)

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
           L V   PDV +   +I+  CK+  V +A EL   M  RG I D+V YS+LI G C+  RI
Sbjct: 2   LHVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRI 61

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEA 390
            +A +LF+S++  GC PD  +Y TL+    +  K+  AL L+ EM++     D S     
Sbjct: 62  SEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLN-----DTS----- 111

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
                  +  K +  L  ++ ++DGLCK  R   A ELFK++   G  P+V++YT +I G
Sbjct: 112 ------QYGIKCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHG 165

Query: 451 LCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCH 510
            C  G  EKA            +C     L ++M    ++ D  T S+L ++L K+    
Sbjct: 166 FCRSGKWEKA------------KC-----LFNEMLDVGIRSDVTTSSMLIDILCKEGKVI 208

Query: 511 ECMNLLPSFLSRN 523
           E   LL   + R 
Sbjct: 209 EANELLEVMIQRG 221



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 124/276 (44%), Gaps = 52/276 (18%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           ++A   F  M  +   P + S+ SL+        + +   L   +  IG+ PD  + ++L
Sbjct: 500 DEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVL 559

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           ++  CK   V +A   L  ++++   P+ VT   L++GLCM  + +EA+ LF K     C
Sbjct: 560 IDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGC 619

Query: 189 RPNVI-------------------------------------PNVICYASIIDGLCKDGF 211
            P+V+                                     P+VI Y+ IIDGLCK G 
Sbjct: 620 LPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGR 679

Query: 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGEL 271
            ++ R LF +MK  G+ P+   Y SLI  +C +   EDAK        L  E V+   +L
Sbjct: 680 EDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAK-------HLFNEMVDQGVQL 732

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
                 + ++Y  +I+  CK+  +DKA  LF  M++
Sbjct: 733 ------NAVTYSVMIHGFCKEGQIDKA--LFQKMEA 760


>gi|356561416|ref|XP_003548977.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 456

 Score =  211 bits (537), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 138/446 (30%), Positives = 220/446 (49%), Gaps = 66/446 (14%)

Query: 56  YLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNT 115
           Y      S +  ++DA+  FN M+ M  TP +  F  +LG LA  K+Y   I LS+++  
Sbjct: 21  YFHSQPPSIDNVVDDAISQFNGMLLMHHTPPIVEFGEILGYLAKMKHYSTAISLSKQMEV 80

Query: 116 IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
            G+ P+ V+LNIL+NCFC +  +S +F  LG+IL+  + P+ +TL  L++GLC++G+  +
Sbjct: 81  KGIEPNLVTLNILINCFCHLGQMSFSFSVLGKILKLGYQPNTITLTTLMKGLCLKGEVQK 140

Query: 176 ASGLFTKFVAFDCRPNVIP-------------------------------NVICYASIID 204
           +     K VA   + N +                                NV+ Y +IID
Sbjct: 141 SVHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKFLRMIEDSSTGLNVVMYNTIID 200

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           GLCKD  VN+    + +M  RGI+P+   Y +LI  +C A       G  + A  L  E 
Sbjct: 201 GLCKDKLVNEAYDFYSEMNARGIFPNVITYTTLIGGFCLA-------GQLTGAFSLLNEM 253

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           +  N       +P+V +Y  +I++LCK+  V +AK L  +M  RG   DVV Y+SL+DG+
Sbjct: 254 ILKN------INPNVYTYAILIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGF 307

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           C    +D A  LF+ ++  G  P+  +Y  LI+   K  ++++A  L+ +++  G     
Sbjct: 308 CKNQNLDKATALFMKMKEWGIQPNKYTYTALIDGLCKGGRLKDAQKLFQDLLVKG----- 362

Query: 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
            CI                 D+  +N ++ GLCK   L  A  +  K+   G  PNVVT+
Sbjct: 363 CCI-----------------DVCTYNVMIGGLCKEGMLDEALAIKSKMEDNGCIPNVVTF 405

Query: 445 TVMICGLCIEGGIEKAYDLLPDMEEK 470
            ++I  L  +   +KA  LL +M  K
Sbjct: 406 EIIIRSLFKKDENDKAEKLLHEMIAK 431


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 134/415 (32%), Positives = 206/415 (49%), Gaps = 33/415 (7%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L DA+  F+ M+  +P P +  F  L+G +   +     I L +++    +  D  S NI
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNI 119

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+ CFC    +  A    G+I +    PDVVT   L+ GLC++ + +EA   F +     
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETT 179

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           CRPNV+     + ++++GLC++G + +   L   M   G+ P    Y +++   C     
Sbjct: 180 CRPNVVT----FTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMC----- 230

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICH--PDVLSYCSIINSLCKDVLVDKAKELFLDM 305
              KG+T +AL L  +          + H  P+V+ Y +II+SLCKD     A+ LF +M
Sbjct: 231 --KKGDTVSALNLLRKMEE-------VSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEM 281

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
           + +GI PD+  Y+S+I G+C  GR  DA +L   +      PD  +YN LIN++ K  K 
Sbjct: 282 QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKF 341

Query: 366 EEALSLYGEMISMGVRPD----NSCI--------LEAAE-LFRTLHNTKFELDLTVFNCL 412
            EA  LY EM+  G+ P+    NS I        L+AAE +F  +       D+  F  L
Sbjct: 342 FEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTL 401

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +DG C + R+    EL  ++PR G   N VTY  +I G C+ G +  A DL   M
Sbjct: 402 IDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQM 456



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 117/425 (27%), Positives = 188/425 (44%), Gaps = 98/425 (23%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ PD  + N ++  FC     SDA   L  +L +  SPDVVT   LI     +GKF EA
Sbjct: 285 GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEA 344

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
           + L+ + +       +IPN I Y S+IDG CK   ++    +F  M  +G  PD F + +
Sbjct: 345 AELYDEMLP----RGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTT 400

Query: 237 LIRVYCCAVNWEDAK----------------------------GNTSAALELHEEFVNG- 267
           LI  YC A   +D                              G+ +AAL+L ++ ++  
Sbjct: 401 LIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSG 460

Query: 268 -----------------NGEL------------------------GVICHPDVLSYCSII 286
                            NG+L                        GV   PDVL+Y  +I
Sbjct: 461 VCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGV--EPDVLTYNILI 518

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
             L  +    +A+EL+ +M  RGI+PD + YSS+IDG C   R+D+A ++FVS+ S+   
Sbjct: 519 CGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFS 578

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406
           P+  ++NTLIN Y K  +V++ L L+ EM   G+  D                       
Sbjct: 579 PNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADA---------------------- 616

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
            ++  L+ G  K   +  A ++F+++   G  P+ +T   M+ G   +  +E+A  +L D
Sbjct: 617 IIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLED 676

Query: 467 MEEKI 471
           ++  +
Sbjct: 677 LQMSV 681



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 142/286 (49%), Gaps = 28/286 (9%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           + T G  PD  +   L++ +C    + D    L  + R+    + VT   LI G C+ G 
Sbjct: 386 MATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGD 445

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG-------- 224
              A  L  + ++      V P+++   +++DGLC +G +     +F  M+         
Sbjct: 446 LNAALDLSQQMIS----SGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDAS 501

Query: 225 ---RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
               G+ PD   YN LI   C  +N    +G    A EL+EE  +     G++  PD ++
Sbjct: 502 HPFNGVEPDVLTYNILI---CGLIN----EGKFLEAEELYEEMPH----RGIV--PDTIT 548

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y S+I+ LCK   +D+A ++F+ M S+   P+VV +++LI+GYC  GR+DD  +LF  + 
Sbjct: 549 YSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMG 608

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
             G + D   Y TLI  + K+  +  AL ++ EMIS GV PD   I
Sbjct: 609 RRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITI 654



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 150/359 (41%), Gaps = 53/359 (14%)

Query: 167 LCMQGKFTEASGLFTKFVAFD--CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224
           L +Q  F E  GL      F    R   +P+V+ +  ++  + +    + V  L+  M+ 
Sbjct: 48  LKLQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMER 107

Query: 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCS 284
           + I  D + +N LI+ +C           + + L           +LG+  HPDV+++ +
Sbjct: 108 KQIRCDIYSFNILIKCFC-----------SCSKLPFALSTFGKITKLGL--HPDVVTFTT 154

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           +++ LC +  V +A + F  M      P+VV +++L++G C  GRI +A  L   +  +G
Sbjct: 155 LLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDG 214

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL 404
             P   +Y T+++   K      AL+L  +M                E+   + N     
Sbjct: 215 LQPTQITYGTIVDGMCKKGDTVSALNLLRKM---------------EEVSHIIPN----- 254

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            + +++ ++D LCK  R   A  LF ++   G  P++ TY  MI G C  G    A    
Sbjct: 255 -VVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAE--- 310

Query: 465 PDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
                         +LL +M +R + PD +T + L     K+    E   L    L R 
Sbjct: 311 --------------QLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRG 355


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 128/439 (29%), Positives = 213/439 (48%), Gaps = 39/439 (8%)

Query: 66  VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
           ++ NDAL  F  M+H +P P +  F  LL  +A    Y   I L E++  +G+ P   + 
Sbjct: 62  LQFNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTC 121

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           NI+M+C C       A   LG++++  F PD+VT   L+ G C   +  +A  LF + + 
Sbjct: 122 NIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILG 181

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
              +PNV+     Y ++I  LCK+  +N    LF  M   G  P+   YN+L+   C   
Sbjct: 182 MGFKPNVVT----YTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIG 237

Query: 246 NWEDA------------KGNTSAALELHEEFVN----------GNGELGVICHPDVLSYC 283
            W DA            + N      L + FV            N  + +  +PDV +Y 
Sbjct: 238 RWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYG 297

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
           S+IN LC   L+D+A+++F  M+  G  P+ V+Y++LI G+C   R++D  K+F  +  +
Sbjct: 298 SLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQK 357

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEA 390
           G + +T +Y  LI  Y  + + + A  ++ +M S    PD             N  + +A
Sbjct: 358 GVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKA 417

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
             +F  +   + ++++  +  ++ G+CK  ++  A++LF  L   G +PNV+TYT MI G
Sbjct: 418 LMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISG 477

Query: 451 LCIEGGIEKAYDLLPDMEE 469
            C  G I +A  L   M+E
Sbjct: 478 FCRRGLIHEADSLFKKMKE 496



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 168/343 (48%), Gaps = 30/343 (8%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            + DA+  F+ ++ M   P + ++ +L+  L   ++  + + L  ++ T G  P+ V+ N
Sbjct: 168 RIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYN 227

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+   C++    DA   L  ++++   P+V+T   LI      GK  EA  L+   +  
Sbjct: 228 ALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQM 287

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
               +V P+V  Y S+I+GLC  G +++ R +F  M+  G YP+  +Y +LI  +C +  
Sbjct: 288 ----SVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKR 343

Query: 247 WEDA---------KGNTSAAL---------------ELHEEFVNGNGELGVICHPDVLSY 282
            ED          KG  +  +               ++ +E  N          PD+ +Y
Sbjct: 344 VEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRA--PPDIRTY 401

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
             +++ LC +  V+KA  +F  M+ R +  ++V Y+ +I G C +G+++DA  LF S+ S
Sbjct: 402 NVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFS 461

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
           +G  P+  +Y T+I+ + +   + EA SL+ +M   G  P+ S
Sbjct: 462 KGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNES 504



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 105/250 (42%), Gaps = 31/250 (12%)

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
           SY  I+ +   ++  + A +LF  M     +P ++ ++ L+     M R D    LF  +
Sbjct: 50  SYRKILRNGLHNLQFNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQM 109

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---------NSC----I 387
           +  G  P   + N +++      +   A    G+M+ +G  PD           C    I
Sbjct: 110 QILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRI 169

Query: 388 LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
            +A  LF  +    F+ ++  +  L+  LCK+  L  A ELF ++   G  PNVVTY  +
Sbjct: 170 EDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNAL 229

Query: 448 ICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYV 489
           + GLC  G    A  LL DM +                  K+ + ++A EL + M +  V
Sbjct: 230 VTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSV 289

Query: 490 KPDEITVSIL 499
            PD  T   L
Sbjct: 290 YPDVFTYGSL 299


>gi|356497979|ref|XP_003517833.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 595

 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 148/515 (28%), Positives = 241/515 (46%), Gaps = 97/515 (18%)

Query: 34  NEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSL 93
           +  SS  S   S    + + L  L  N KS +V    AL F++ M+ M+P P +  FN L
Sbjct: 30  SHSSSTFSTYASINTSRAQFLDSL-RNVKSVDV----ALDFYHKMVTMKPFPCVKDFNLL 84

Query: 94  LGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVF 153
            G +A  K+Y   I L + ++ IG+ P+  + NI++NC C++      F  LG + +   
Sbjct: 85  FGIVAKMKHYTTAISLIKHMSYIGVKPNVPTHNIVINCLCRLNHTVFGFSVLGLMFKIGV 144

Query: 154 SPDVVTLGCLIRGLCMQGKFTEA-------------SGLFTKFVAFD--CR--------- 189
            P +VT   ++ GLC++G   +A             S  +T+    +  C+         
Sbjct: 145 EPSIVTFTTIVNGLCVEGNVAQAIRFVDHLKDMGYESDRYTRGAIINGLCKVGHSSAALS 204

Query: 190 -------PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
                   N   +V  Y +++DGLCKDG V +   LF  M G+GI PD F YN LI   C
Sbjct: 205 YLKKMEEQNCNLDVTAYNAVVDGLCKDGMVFEAWDLFSQMTGKGIQPDLFTYNCLIHGLC 264

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
               W++A    +  +             G++  PDV ++  I     K  ++ +AK +F
Sbjct: 265 NFDRWKEAAPLLANMMRK-----------GIM--PDVQTFNVIGGRFLKTGMISRAKSIF 311

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
             M   GI  DVV YSS+I  +C++ ++ DA ++F  +  +GC+P+  +Y +LI+ + +I
Sbjct: 312 SFMGHMGIEHDVVTYSSIIGVHCMLNQMKDAMEVFDLMIRKGCLPNIVTYTSLIHGWCEI 371

Query: 363 EKVEEALSLYGEMISMGVRPD------------------------------------NSC 386
           + + +A+   GEM++ G+ P+                                     +C
Sbjct: 372 KNMNKAMYFLGEMVNNGLDPNIVTWNTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTC 431

Query: 387 IL------------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
            +            EA  LFR L     +LD+ +++ +++G+C S +L  A ELF  L  
Sbjct: 432 AIILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSIILNGMCSSGKLNDALELFSYLSS 491

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
            G + +VVTY +MI GLC EG ++ A DLL  MEE
Sbjct: 492 KGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEE 526



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 174/363 (47%), Gaps = 30/363 (8%)

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           D  + N +++  CK   V +A+    ++  K   PD+ T  CLI GLC   ++ EA+ L 
Sbjct: 217 DVTAYNAVVDGLCKDGMVFEAWDLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLL 276

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
              +    R  ++P+V  +  I     K G +++ + +F  M   GI  D   Y+S+I V
Sbjct: 277 ANMM----RKGIMPDVQTFNVIGGRFLKTGMISRAKSIFSFMGHMGIEHDVVTYSSIIGV 332

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
           +C     +DA       +E+ +  +         C P++++Y S+I+  C+   ++KA  
Sbjct: 333 HCMLNQMKDA-------MEVFDLMIRKG------CLPNIVTYTSLIHGWCEIKNMNKAMY 379

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
              +M + G+ P++V +++LI G+C  G+   A++LF  +   G +PD  +   +++   
Sbjct: 380 FLGEMVNNGLDPNIVTWNTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIILDGLF 439

Query: 361 KIEKVEEALSLYGEMISMGVRPD---NSCIL----------EAAELFRTLHNTKFELDLT 407
           K     EA+SL+ E+  M    D    S IL          +A ELF  L +   ++D+ 
Sbjct: 440 KCHFHSEAMSLFRELEKMNSDLDIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKIDVV 499

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            +N +++GLCK   L  A +L  K+   G  P+  TY V + GL     I K+   L  M
Sbjct: 500 TYNIMINGLCKEGLLDDAEDLLMKMEENGCPPDECTYNVFVQGLLRRYEISKSTKYLMFM 559

Query: 468 EEK 470
           + K
Sbjct: 560 KGK 562



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 142/342 (41%), Gaps = 38/342 (11%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           +A   F+ M      P + ++N L+  L     +     L   +   G++PD  + N++ 
Sbjct: 236 EAWDLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIG 295

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
             F K   +S A      +       DVVT   +I   CM  +  +A  +F   +    R
Sbjct: 296 GRFLKTGMISRAKSIFSFMGHMGIEHDVVTYSSIIGVHCMLNQMKDAMEVFDLMI----R 351

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
              +PN++ Y S+I G C+   +NK      +M   G+ P+   +N+LI  +C A     
Sbjct: 352 KGCLPNIVTYTSLIHGWCEIKNMNKAMYFLGEMVNNGLDPNIVTWNTLIGGFCKAGKPVA 411

Query: 250 AK---------GN-------------------TSAALELHEEFVNGNGELGVICHPDVLS 281
           AK         G                     S A+ L  E    N +L      D++ 
Sbjct: 412 AKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDL------DIII 465

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y  I+N +C    ++ A ELF  + S+G+  DVV Y+ +I+G C  G +DDA  L + +E
Sbjct: 466 YSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKME 525

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
             GC PD  +YN  +    +  ++ ++      M   G R +
Sbjct: 526 ENGCPPDECTYNVFVQGLLRRYEISKSTKYLMFMKGKGFRAN 567



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 140/293 (47%), Gaps = 17/293 (5%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A   F++M HM     + +++S++G         + + + + +   G LP+ V+   
Sbjct: 304 ISRAKSIFSFMGHMGIEHDVVTYSSIIGVHCMLNQMKDAMEVFDLMIRKGCLPNIVTYTS 363

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++ +C++  ++ A   LG ++     P++VT   LI G C  GK   A  LF  FV   
Sbjct: 364 LIHGWCEIKNMNKAMYFLGEMVNNGLDPNIVTWNTLIGGFCKAGKPVAAKELF--FVMH- 420

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            +   +P++   A I+DGL K  F ++   LF +++      D  +Y+ ++   C     
Sbjct: 421 -KHGQLPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSIILNGMC----- 474

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
             + G  + ALEL     +   ++      DV++Y  +IN LCK+ L+D A++L + M+ 
Sbjct: 475 --SSGKLNDALELFSYLSSKGVKI------DVVTYNIMINGLCKEGLLDDAEDLLMKMEE 526

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
            G  PD   Y+  + G      I  + K  + ++ +G   + ++   LIN +S
Sbjct: 527 NGCPPDECTYNVFVQGLLRRYEISKSTKYLMFMKGKGFRANATTTKLLINYFS 579


>gi|356497981|ref|XP_003517834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 543

 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 140/490 (28%), Positives = 233/490 (47%), Gaps = 96/490 (19%)

Query: 59  ENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGL 118
            N KS +V    AL F++ M+ M+P P +  FN L G +A  K+Y   I L + ++ IG+
Sbjct: 2   RNVKSVDV----ALDFYHKMVTMKPFPCVKDFNLLFGIVAKMKHYTTAISLIKHMSYIGV 57

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA-- 176
            P+  + NI++NC C++      F  LG + +    P +VT   ++ GLC++G   +A  
Sbjct: 58  KPNVSTHNIVINCLCRLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIR 117

Query: 177 -----------SGLFTKFVAFD--CR----------------PNVIPNVICYASIIDGLC 207
                      S  +T+    +  C+                 N   +V  Y++++DGLC
Sbjct: 118 FVDHLKDMGYESDRYTRGAIINGLCKVGHSSAALSYLKKMEEQNCNLDVTAYSAVVDGLC 177

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
           KDG V +   LF  M G+GI P+ F YN LI   C    W++A    +  +         
Sbjct: 178 KDGMVFEALDLFSQMTGKGIQPNLFTYNCLIHGLCNFDRWKEAAPLLANMMRK------- 230

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
               G++  PDV ++  I     K  ++ +AK +F  M   GI  +VV Y+S+I  +C++
Sbjct: 231 ----GIM--PDVQTFNVIAGRFLKTGMISRAKSIFSFMGHMGIEHNVVTYNSIIGAHCML 284

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---- 383
            ++ DA ++F  +  +GC+P+  +YN+LI+ + + + + +A+   GEM++ G+ PD    
Sbjct: 285 NQMKDAMEVFDLMIRKGCLPNIVTYNSLIHGWCETKNMNKAMYFLGEMVNNGLDPDVVTW 344

Query: 384 --------------------------------NSCIL------------EAAELFRTLHN 399
                                            +C +            EA  LFR L  
Sbjct: 345 STLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFRELEK 404

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
              +LD+ +++ +++G+C S +L  A ELF  L   G + +VVTY +MI GLC EG ++ 
Sbjct: 405 MNSDLDIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDD 464

Query: 460 AYDLLPDMEE 469
           A DLL  MEE
Sbjct: 465 AEDLLMKMEE 474



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 172/363 (47%), Gaps = 30/363 (8%)

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           D  + + +++  CK   V +A     ++  K   P++ T  CLI GLC   ++ EA+ L 
Sbjct: 165 DVTAYSAVVDGLCKDGMVFEALDLFSQMTGKGIQPNLFTYNCLIHGLCNFDRWKEAAPLL 224

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
              +    R  ++P+V  +  I     K G +++ + +F  M   GI  +   YNS+I  
Sbjct: 225 ANMM----RKGIMPDVQTFNVIAGRFLKTGMISRAKSIFSFMGHMGIEHNVVTYNSIIGA 280

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
           +C     +DA       +E+ +  +         C P++++Y S+I+  C+   ++KA  
Sbjct: 281 HCMLNQMKDA-------MEVFDLMIRKG------CLPNIVTYNSLIHGWCETKNMNKAMY 327

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
              +M + G+ PDVV +S+LI G+C  G+   A++LF  +   G +PD  +   +++   
Sbjct: 328 FLGEMVNNGLDPDVVTWSTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIILDGLF 387

Query: 361 KIEKVEEALSLYGEMISMGVRPD---NSCIL----------EAAELFRTLHNTKFELDLT 407
           K     EA+SL+ E+  M    D    S IL          +A ELF  L +   ++D+ 
Sbjct: 388 KCHFHSEAMSLFRELEKMNSDLDIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKIDVV 447

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            +N +++GLCK   L  A +L  K+   G  P+  TY V + GL     I K+   L  M
Sbjct: 448 TYNIMINGLCKEGLLDDAEDLLMKMEENGCPPDECTYNVFVQGLLRRYEISKSTKYLMFM 507

Query: 468 EEK 470
           + K
Sbjct: 508 KGK 510



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 143/342 (41%), Gaps = 38/342 (11%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           +AL  F+ M      P + ++N L+  L     +     L   +   G++PD  + N++ 
Sbjct: 184 EALDLFSQMTGKGIQPNLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIA 243

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
             F K   +S A      +       +VVT   +I   CM  +  +A  +F   +    R
Sbjct: 244 GRFLKTGMISRAKSIFSFMGHMGIEHNVVTYNSIIGAHCMLNQMKDAMEVFDLMI----R 299

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
              +PN++ Y S+I G C+   +NK      +M   G+ PD   +++LI  +C A     
Sbjct: 300 KGCLPNIVTYNSLIHGWCETKNMNKAMYFLGEMVNNGLDPDVVTWSTLIGGFCKAGKPVA 359

Query: 250 AK---------GN-------------------TSAALELHEEFVNGNGELGVICHPDVLS 281
           AK         G                     S A+ L  E    N +L      D++ 
Sbjct: 360 AKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDL------DIII 413

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y  I+N +C    ++ A ELF  + S+G+  DVV Y+ +I+G C  G +DDA  L + +E
Sbjct: 414 YSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKME 473

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
             GC PD  +YN  +    +  ++ ++      M   G R +
Sbjct: 474 ENGCPPDECTYNVFVQGLLRRYEISKSTKYLMFMKGKGFRAN 515



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 142/293 (48%), Gaps = 17/293 (5%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A   F++M HM     + ++NS++GA        + + + + +   G LP+ V+ N 
Sbjct: 252 ISRAKSIFSFMGHMGIEHNVVTYNSIIGAHCMLNQMKDAMEVFDLMIRKGCLPNIVTYNS 311

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++ +C+   ++ A   LG ++     PDVVT   LI G C  GK   A  LF  FV   
Sbjct: 312 LIHGWCETKNMNKAMYFLGEMVNNGLDPDVVTWSTLIGGFCKAGKPVAAKELF--FVMH- 368

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            +   +P++   A I+DGL K  F ++   LF +++      D  +Y+ ++   C     
Sbjct: 369 -KHGQLPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSIILNGMC----- 422

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
             + G  + ALEL   +++  G        DV++Y  +IN LCK+ L+D A++L + M+ 
Sbjct: 423 --SSGKLNDALELFS-YLSSKG-----VKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEE 474

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
            G  PD   Y+  + G      I  + K  + ++ +G   + ++   LIN +S
Sbjct: 475 NGCPPDECTYNVFVQGLLRRYEISKSTKYLMFMKGKGFRANATTTKLLINYFS 527


>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 582

 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 152/509 (29%), Positives = 240/509 (47%), Gaps = 83/509 (16%)

Query: 67  ELNDALCFFNYMIHMQ-PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
           E N+ +  FN ++H + PTP +  FN +L +L   K++   + L +++   G++ DF + 
Sbjct: 49  EENNLISSFNSLLHHKNPTPPIIQFNKILSSLVKAKHHSTALSLHQQMELNGIVSDFFTF 108

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           NIL+NCF ++   S +F   G+IL+K F P+ +T   LI+GLC++G   +A     K VA
Sbjct: 109 NILINCFSQLGLNSLSFSVFGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVA 168

Query: 186 FD---------------CRPNVI----------------PNVICYASIIDGLCKDGFVNK 214
                            C+   I                PN + Y  IID +CK   VN 
Sbjct: 169 QGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVND 228

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
              L+  M  + I PD F  NSLI  +C     ++A G       LH+  +         
Sbjct: 229 AFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVG------LLHKMILEN------- 275

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
            +P + ++  ++++ CK+  V +AK +      + II DVV Y+SL+DGYCL+  I+ A+
Sbjct: 276 INPRMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAK 335

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---------- 384
            +F S+ S G I +  SY T+IN   KI+ V+EA++L+ EM    + P+           
Sbjct: 336 DIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGL 395

Query: 385 ------SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
                 SC+L   +L   +H+     ++  +N ++D LCK+  +  A  L   L   G  
Sbjct: 396 GKLGKISCVL---KLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIR 452

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE-------------CLK-----AIEL 480
           P++ TYTV+I GLC  G +E A  +  D+  K                C+K     A+ L
Sbjct: 453 PDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFDAALAL 512

Query: 481 LHKMAKRYVKPDEITVSI-LEELLNKDEN 508
           L KM      P+  T  I +  L  KDEN
Sbjct: 513 LSKMEDNGCIPNAKTYEIVILSLFEKDEN 541



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 113/265 (42%), Gaps = 40/265 (15%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P ++ +  I++SL K      A  L   M+  GI+ D   ++ LI+ +  +G    +  +
Sbjct: 68  PPIIQFNKILSSLVKAKHHSTALSLHQQMELNGIVSDFFTFNILINCFSQLGLNSLSFSV 127

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
           F  I  +G  P+  ++NTLI        + +AL+ + ++++ G                 
Sbjct: 128 FGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQG----------------- 170

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
                F LD   +  L++GLCK  R+ +A +L K++     +PN V Y ++I  +C    
Sbjct: 171 -----FHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKL 225

Query: 457 IEKAYDLLPDMEEK------------------IRECLKAIELLHKMAKRYVKPDEITVSI 498
           +  A+DL   M  K                  + +  +A+ LLHKM    + P   T SI
Sbjct: 226 VNDAFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSI 285

Query: 499 LEELLNKDENCHECMNLLPSFLSRN 523
           L +   K+    E   +L   + ++
Sbjct: 286 LVDAFCKEGKVKEAKMMLGVTMKKD 310


>gi|357442883|ref|XP_003591719.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|357501105|ref|XP_003620841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480767|gb|AES61970.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495856|gb|AES77059.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 524

 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 156/551 (28%), Positives = 243/551 (44%), Gaps = 113/551 (20%)

Query: 52  KLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICL 109
           + L Y      S  V+++DA+  F  M+ M P+P +  FN +LG+L  +    Y   I L
Sbjct: 11  RTLHYSHSKFNSNHVDVHDAISSFYRMLRMNPSPSIIEFNKILGSLVKSNNNNYPIAISL 70

Query: 110 SERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCM 169
             RL    + P  V+ N ++NC+C +  +  AF  L +IL+  + PD +TL  LI+GLC+
Sbjct: 71  YHRLQLNAITPSIVTFNTVINCYCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIKGLCL 130

Query: 170 QGKFTEASGLFTKFVAFDCRPN-------------------------------VIPNVIC 198
            GK  EA       +A   R N                               V  NV+ 
Sbjct: 131 NGKVHEALHFHDHVIARGFRLNEVSYGILINGLCKMGETRAALQVLRKIDGKLVNTNVVM 190

Query: 199 YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG------ 252
           Y++IID LCK+  V +   L+  M  + + PD   +++LI  +C    +++A G      
Sbjct: 191 YSTIIDSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMV 250

Query: 253 -------------------------NTSAALELHEEFVNGNGELGVICH--------PDV 279
                                     T   L +  + VN   +   + +        PDV
Sbjct: 251 LTNINPDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGKRRVTPDV 310

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
            SY  II  LCK  +VD+A  LF +M+ +GI PD V YSSLIDG C   RI  A +L   
Sbjct: 311 HSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQ 370

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN 399
           + + G   D  +Y + +++  K  +V++A++L  ++   G++P                 
Sbjct: 371 MHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQP----------------- 413

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
                ++  +N L+DGLCK  R  +A  +F+ L   G +  V TY +MI GLC+EG  ++
Sbjct: 414 -----NINTYNILIDGLCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDE 468

Query: 460 AYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITV-SILEELLNKDENCHECMNLLPS 518
           A  LL  ME+    C                PD +T  +I+  L   DEN H+   LL  
Sbjct: 469 AMTLLEKMED--NGC---------------TPDVVTYETIIRALFKNDEN-HKAEKLLRE 510

Query: 519 FLSRNQEESKL 529
            ++R   E K+
Sbjct: 511 MIARGLLEEKV 521



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 149/344 (43%), Gaps = 37/344 (10%)

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNK--VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           R N  P++I +  I+  L K    N      L+  ++   I P    +N++I  YC    
Sbjct: 39  RMNPSPSIIEFNKILGSLVKSNNNNYPIAISLYHRLQLNAITPSIVTFNTVINCYCHLGE 98

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            + A    +  L++               HPD ++  ++I  LC +  V +A      + 
Sbjct: 99  MDFAFSVLAKILKMGY-------------HPDTITLTTLIKGLCLNGKVHEALHFHDHVI 145

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           +RG   + V Y  LI+G C MG    A ++   I+ +    +   Y+T+I+S  K + V 
Sbjct: 146 ARGFRLNEVSYGILINGLCKMGETRAALQVLRKIDGKLVNTNVVMYSTIIDSLCKEKLVT 205

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           EA  LY +MI   V PD                      +  F+ L+ G C   + + A+
Sbjct: 206 EAYELYSQMIVKKVSPD----------------------VVTFSALIYGFCMVGQFKEAF 243

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAK 486
            LF ++      P+V T+ +++  LC EG  ++  ++L  M +++ +  KA  + + + K
Sbjct: 244 GLFHEMVLTNINPDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGK 303

Query: 487 RYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           R V PD  + +I+ + L K +   E ++L      +     K+T
Sbjct: 304 RRVTPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVT 347



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 93/417 (22%), Positives = 169/417 (40%), Gaps = 81/417 (19%)

Query: 136 IGVSDAFVALGRILRKVFSPDVV----TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
           + V DA  +  R+LR   SP ++     LG L++       +  A  L+ +      + N
Sbjct: 25  VDVHDAISSFYRMLRMNPSPSIIEFNKILGSLVKS--NNNNYPIAISLYHRL-----QLN 77

Query: 192 VI-PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
            I P+++ + ++I+  C  G ++    +   +   G +PD     +LI+  C        
Sbjct: 78  AITPSIVTFNTVINCYCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIKGLCL------- 130

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
            G    AL  H+  +     L  +      SY  +IN LCK      A ++   +  + +
Sbjct: 131 NGKVHEALHFHDHVIARGFRLNEV------SYGILINGLCKMGETRAALQVLRKIDGKLV 184

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
             +VV+YS++ID  C    + +A +L+  +  +   PD  +++ LI  +  + + +EA  
Sbjct: 185 NTNVVMYSTIIDSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFG 244

Query: 371 LYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW---------- 420
           L+ EM+   + P                      D+  FN LVD LCK            
Sbjct: 245 LFHEMVLTNINP----------------------DVCTFNILVDALCKEGSTKETKNVLA 282

Query: 421 -------RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
                  ++  A  +F  + +    P+V +YT++I  LC                 KI+ 
Sbjct: 283 VMMKEVNQVNKAKHVFNIIGKRRVTPDVHSYTIIIKRLC-----------------KIKM 325

Query: 474 CLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
             +A+ L ++M  + + PD++T S L + L K E       LL    +R Q    +T
Sbjct: 326 VDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQMHARGQPADVIT 382


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score =  208 bits (529), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 136/435 (31%), Positives = 206/435 (47%), Gaps = 66/435 (15%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++D L  FN M+   P P +  F+ LLGA+    +Y   I L  +L++ G+ P   +L I
Sbjct: 36  VDDTLLSFNRMLRKHPPPPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTI 95

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG----LFTKF 183
           L+NC+C    +S AF  LG IL+  F P++VT   LI G C+ G  ++A      L  K 
Sbjct: 96  LINCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKG 155

Query: 184 VAFD-----------CRPN----------------VIPNVICYASIIDGLCKDGFVNKVR 216
              D           C+                  V PN+I Y+++IDGLCKD  +    
Sbjct: 156 YPLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADAL 215

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            LF  +  RGI  D   YNSLI   C    W +A         L    V GN       +
Sbjct: 216 RLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREAT-------RLLTMMVRGN------IN 262

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PD  ++  ++++LCK+  + +A+ +F  M  RG  PD+V Y++L++G+CL   + +AR+L
Sbjct: 263 PDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEAREL 322

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
           F  +   G  PD  +YN LIN Y KI+ V+EA+ L+ E+    + P              
Sbjct: 323 FNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVP-------------- 368

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
                   +L  +N L+DGLCK  R+    EL  ++   G  P++VTY + +   C    
Sbjct: 369 --------NLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKP 420

Query: 457 IEKAYDLLPDMEEKI 471
            EKA  L   + + I
Sbjct: 421 YEKAISLFRQIVQGI 435



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 181/409 (44%), Gaps = 42/409 (10%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G+    DAL     M      P + ++++++  L   +   + + L   + + G+L D
Sbjct: 172 KNGQTR--DALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVD 229

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+ N L++  C +    +A   L  ++R   +PD  T   L+  LC +G+  EA G+F 
Sbjct: 230 VVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVF- 288

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
              A   +    P+++ Y ++++G C    V++ R LF  M  RG+ PD   YN LI  Y
Sbjct: 289 ---AVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGY 345

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
            C ++  D       A+ L +E    N        P++ +Y S+I+ LCK   +   +EL
Sbjct: 346 -CKIDMVD------EAMVLFKEIRCKN------LVPNLATYNSLIDGLCKLGRMSCVQEL 392

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
             +M  RG  PD+V Y+  +D +C     + A  LF  I  +G  PD   Y+ ++ ++ K
Sbjct: 393 VDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQI-VQGIWPDFYMYDVIVENFCK 451

Query: 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
            EK++ A      ++  G  P                      ++  +  +++ LCK   
Sbjct: 452 GEKLKIAEEALQHLLIHGCCP----------------------NVRTYTIMINALCKDCS 489

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
              A  L  K+      P+ VT+  +I  L      +KA  L  +M E+
Sbjct: 490 FDEAMTLLSKMDDNDCPPDAVTFETIIGALQERNETDKAEKLRLEMIER 538



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 143/319 (44%), Gaps = 18/319 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +  +A      M+     P   +FN L+ AL  +   V    +   +   G  PD V+ N
Sbjct: 245 QWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYN 304

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            LM  FC    VS+A     R++++   PDV+    LI G C      EA  LF +    
Sbjct: 305 ALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEI--- 361

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C+ N++PN+  Y S+IDGLCK G ++ V+ L  +M  RG  PD   YN  +  +C +  
Sbjct: 362 RCK-NLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKP 420

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
           +E        A+ L  + V G         PD   Y  I+ + CK   +  A+E    + 
Sbjct: 421 YE-------KAISLFRQIVQG-------IWPDFYMYDVIVENFCKGEKLKIAEEALQHLL 466

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
             G  P+V  Y+ +I+  C     D+A  L   ++   C PD  ++ T+I +  +  + +
Sbjct: 467 IHGCCPNVRTYTIMINALCKDCSFDEAMTLLSKMDDNDCPPDAVTFETIIGALQERNETD 526

Query: 367 EALSLYGEMISMGVRPDNS 385
           +A  L  EMI  G+  D +
Sbjct: 527 KAEKLRLEMIERGLVNDEA 545



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 70/170 (41%), Gaps = 24/170 (14%)

Query: 371 LYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
           L G ++ MG  P       A  LF  LH+      +     L++  C    L  A+ L  
Sbjct: 61  LLGAIVRMGHYP------TAISLFSQLHSKGITPSIATLTILINCYCHQAHLSFAFSLLG 114

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIR------------------ 472
            + + G +PN+VT+  +I G CI G + KA     D+  K                    
Sbjct: 115 TILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNG 174

Query: 473 ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
           +   A++LL KM +  V+P+ IT S + + L KD    + + L     SR
Sbjct: 175 QTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSR 224


>gi|357442837|ref|XP_003591696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480744|gb|AES61947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  208 bits (529), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 142/467 (30%), Positives = 217/467 (46%), Gaps = 77/467 (16%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            ++D +  F+ M+ + P P +  F  +L +L   K+Y   I L  +L   G+ P+ VSL+
Sbjct: 51  HVDDLVSSFHRMLLLNPAPSVIEFGKILSSLVKLKHYPTVISLFYQLEFNGIKPNIVSLS 110

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           IL+NC+C +  +  AF    +IL+  + P+ +TL  L++G C+  K  EA       +A 
Sbjct: 111 ILINCYCHLGQMRFAFSIFAKILKMGYHPNTITLTTLVKGFCLNHKVKEALHFHDHVLAL 170

Query: 187 DCRPN-------------------------------VIPNVICYASIIDGLCKDGFVNKV 215
               N                               V  +V+ Y++IIDGLCKD  VN  
Sbjct: 171 GFHFNQVSYGTLINGLCKIGETRAALQMLRQIEGKLVSTDVVMYSTIIDGLCKDKLVNDA 230

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
             L+ +M  + I P     NSLI  YC    +++A G       L  E V  N       
Sbjct: 231 YELYSEMITKRISPTVVTLNSLIYGYCIVGQFKEAFG-------LLREMVLKN------I 277

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR------ 329
           +PDV ++  ++++LCK+  + +AK     M   G++PDVV YSSL+DGYCL+        
Sbjct: 278 NPDVYTFNILVDALCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMDGYCLVNEVNKAKH 337

Query: 330 --------------IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
                         +D A  LF  +      PDT +YN+LI+   K  ++  A  L  EM
Sbjct: 338 VYSIVINGFCKIKMVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAWELVDEM 397

Query: 376 ISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRL 422
              G   D             N  + +A  L + + +   +LD+  +N L+DGLCK  RL
Sbjct: 398 RDSGQPADIITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDMYTYNILIDGLCKQGRL 457

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           + A  +F+ L   G    V TYT+MI GLC+EG + +A  LL  ME+
Sbjct: 458 KDAQVIFQDLLIKGYNLTVWTYTIMINGLCLEGLLNEAETLLSKMED 504



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/285 (32%), Positives = 136/285 (47%), Gaps = 39/285 (13%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA-SG 178
           P  V+LN L+  +C +    +AF  L  ++ K  +PDV T   L+  LC +GK  EA SG
Sbjct: 244 PTVVTLNSLIYGYCIVGQFKEAFGLLREMVLKNINPDVYTFNILVDALCKEGKIKEAKSG 303

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDG--------------------LCKDGFVNKVRVL 218
                +A   +  V+P+V+ Y+S++DG                     CK   V+K   L
Sbjct: 304 -----IAVMMKEGVMPDVVTYSSLMDGYCLVNEVNKAKHVYSIVINGFCKIKMVDKALSL 358

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD 278
           F +M+ R I PD   YNSLI   C         G  S A EL +E  +           D
Sbjct: 359 FYEMRCRRIAPDTVTYNSLIDGLC-------KSGRISYAWELVDEMRDSGQP------AD 405

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
           +++Y S+I++LCK+  VDKA  L   +K +GI  D+  Y+ LIDG C  GR+ DA+ +F 
Sbjct: 406 IITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDMYTYNILIDGLCKQGRLKDAQVIFQ 465

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            +  +G      +Y  +IN       + EA +L  +M   G  PD
Sbjct: 466 DLLIKGYNLTVWTYTIMINGLCLEGLLNEAETLLSKMEDNGCVPD 510



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 163/361 (45%), Gaps = 42/361 (11%)

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           V D   +  R+L    +P V+  G ++  L     +     LF + + F+    + PN++
Sbjct: 52  VDDLVSSFHRMLLLNPAPSVIEFGKILSSLVKLKHYPTVISLFYQ-LEFN---GIKPNIV 107

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
             + +I+  C  G +     +F  +   G +P+     +L++ +C              A
Sbjct: 108 SLSILINCYCHLGQMRFAFSIFAKILKMGYHPNTITLTTLVKGFCL-------NHKVKEA 160

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
           L  H+        L +  H + +SY ++IN LCK      A ++   ++ + +  DVV+Y
Sbjct: 161 LHFHDHV------LALGFHFNQVSYGTLINGLCKIGETRAALQMLRQIEGKLVSTDVVMY 214

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           S++IDG C    ++DA +L+  + ++   P   + N+LI  Y  + + +EA  L  EM+ 
Sbjct: 215 STIIDGLCKDKLVNDAYELYSEMITKRISPTVVTLNSLIYGYCIVGQFKEAFGLLREMVL 274

Query: 378 MGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
             + PD                      +  FN LVD LCK  +++ A      + + G 
Sbjct: 275 KNINPD----------------------VYTFNILVDALCKEGKIKEAKSGIAVMMKEGV 312

Query: 438 EPNVVTYTVMICGLCIEGGIEKA---YDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEI 494
            P+VVTY+ ++ G C+   + KA   Y ++ +   KI+   KA+ L ++M  R + PD +
Sbjct: 313 MPDVVTYSSLMDGYCLVNEVNKAKHVYSIVINGFCKIKMVDKALSLFYEMRCRRIAPDTV 372

Query: 495 T 495
           T
Sbjct: 373 T 373



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 138/317 (43%), Gaps = 38/317 (11%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +NDA   ++ MI  + +P + + NSL+        +     L   +    + PD  + NI
Sbjct: 227 VNDAYELYSEMITKRISPTVVTLNSLIYGYCIVGQFKEAFGLLREMVLKNINPDVYTFNI 286

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++  CK   + +A   +  ++++   PDVVT   L+ G C+  +  +A  +++  +   
Sbjct: 287 LVDALCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMDGYCLVNEVNKAKHVYSIVINGF 346

Query: 188 CRPNVI----------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
           C+  ++                P+ + Y S+IDGLCK G ++    L  +M+  G   D 
Sbjct: 347 CKIKMVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAWELVDEMRDSGQPADI 406

Query: 232 FVYNSLIRVYCCAVNWEDA----KGNTSAALEL----HEEFVNG---NGEL--GVICHPD 278
             YNSLI   C   + + A    K      ++L    +   ++G    G L    +   D
Sbjct: 407 ITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDMYTYNILIDGLCKQGRLKDAQVIFQD 466

Query: 279 VL---------SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
           +L         +Y  +IN LC + L+++A+ L   M+  G +PD V   ++I       +
Sbjct: 467 LLIKGYNLTVWTYTIMINGLCLEGLLNEAETLLSKMEDNGCVPDAVTCETIIRALFENDK 526

Query: 330 IDDARKLFVSIESEGCI 346
            + A KL   + + G +
Sbjct: 527 NERAEKLLREMIARGLL 543


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score =  207 bits (528), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 143/482 (29%), Positives = 223/482 (46%), Gaps = 93/482 (19%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+DA+  F+ M+ M+P P +  F+ L   +   K+Y   + L   +  +G+      LNI
Sbjct: 43  LDDAVSLFHRMVRMKPLPSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSILNI 102

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           + N +C    +  AF  L   L+     +VVT   L+ GL  + K T+A  LF K V   
Sbjct: 103 VTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREK 162

Query: 188 -CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKV 215
            C PN +                               P+V  Y+ +ID LCKD  ++  
Sbjct: 163 ICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAA 222

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
             L  +MK + I P+ F YNSLI   C    WE  K        L  E VN N       
Sbjct: 223 INLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVK-------TLLSEMVNLN------I 269

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
           +P+V ++  +I+ LCK+  V+ A E+   M  +G+ PD++ YS+++DGYCL G++D AR+
Sbjct: 270 NPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARR 329

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---SCIL---- 388
           +F  +  +G  P+  SY+ LIN Y K + + +A+ L+GE+   G++PD    S IL    
Sbjct: 330 VFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLI 389

Query: 389 -----------------------------------------EAAELFRTLHNTKFELDLT 407
                                                    EA  LF  L   + + +++
Sbjct: 390 EVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNIS 449

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            +  +++GLCK+ R+R A  +F+KLP  G  P+V TY VMI G C EG  ++   +L  M
Sbjct: 450 FYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKM 509

Query: 468 EE 469
           E+
Sbjct: 510 ED 511



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/438 (23%), Positives = 194/438 (44%), Gaps = 71/438 (16%)

Query: 64  GEVELNDALCFFNYMIHM---QPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
            E ++ DA+  F  ++     +P   M  + +++  L+ + +    + L   +      P
Sbjct: 144 AENKVTDAVVLFKKLVREKICEPNEVM--YGTVMNGLSKRGHTEKTLSLLRIMEQGNTKP 201

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           D  + +I+++  CK I +  A   L  + +K   P++ T   LI GLC  G++ +   L 
Sbjct: 202 DVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLL 261

Query: 181 TKFVAFDCRPNVI-------------------------------PNVICYASIIDGLCKD 209
           ++ V  +  PNV                                P++I Y++I+DG C  
Sbjct: 262 SEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLR 321

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
           G V++ R +F  ++ +GI P+ F Y+ LI  YC        K N + A++L  E ++  G
Sbjct: 322 GQVDRARRVFNVLRDKGIKPNIFSYSILINGYC-------KKKNLAKAMQLFGE-ISQKG 373

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
                  PD ++Y +I++ L +   +  AK++F +M   G  PD+ ++S+L+ GY   G 
Sbjct: 374 -----LKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGL 428

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE 389
           +++A  LF  +E      + S Y  +IN   K ++V EA +++ ++ S+G+ P       
Sbjct: 429 VEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIP------- 481

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
                          D+  +N ++ G C+         + +K+   G   N +TY V++ 
Sbjct: 482 ---------------DVRTYNVMITGFCREGLFDEVKGILRKMEDNGCPANNITYNVIMQ 526

Query: 450 GLCIEGGIEKAYDLLPDM 467
           G      I +    + +M
Sbjct: 527 GFFRSNKISEIVSFMKEM 544



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 153/341 (44%), Gaps = 26/341 (7%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           ++ L+ A+   N M      P + ++NSL+  L     +     L   +  + + P+  +
Sbjct: 216 DINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHT 275

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            +IL++  CK   V DA   +  ++ K   PD++T   ++ G C++G+   A  +F   V
Sbjct: 276 FSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFN--V 333

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
             D    + PN+  Y+ +I+G CK   + K   LF ++  +G+ PD   Y++++      
Sbjct: 334 LRD--KGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEV 391

Query: 245 VNWEDAKGNTSAALE--------LHEEFVNGNGELGVICHPDVLS--------------Y 282
               DAK      L         LH   + G  + G++    +L               Y
Sbjct: 392 GRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFY 451

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
             +IN LCK+  V +A  +F  + S G+IPDV  Y+ +I G+C  G  D+ + +   +E 
Sbjct: 452 TVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMED 511

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            GC  +  +YN ++  + +  K+ E +S   EM   G   D
Sbjct: 512 NGCPANNITYNVIMQGFFRSNKISEIVSFMKEMAGRGFSFD 552



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 117/244 (47%), Gaps = 40/244 (16%)

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
           IC P+ + Y +++N L K    +K   L   M+     PDV  YS +ID  C    +D A
Sbjct: 163 ICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAA 222

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAEL 393
             L   ++ +   P+  +YN+LI+   K+ + E+  +L  EM+++ + P+          
Sbjct: 223 INLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPN---------- 272

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
                       +  F+ L+DGLCK  ++  A E+ + +   G EP+++TY+ ++ G C+
Sbjct: 273 ------------VHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCL 320

Query: 454 EGGIEKA------------------YDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEIT 495
            G +++A                  Y +L +   K +   KA++L  +++++ +KPD +T
Sbjct: 321 RGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVT 380

Query: 496 VSIL 499
            S +
Sbjct: 381 YSTI 384



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 83/209 (39%), Gaps = 33/209 (15%)

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE 389
           +DDA  LF  +     +P    ++ L  +   ++     +SL+ EM  +G+ P +  IL 
Sbjct: 43  LDDAVSLFHRMVRMKPLPSVIDFSKLFKTMINMKHYSAVVSLFREMRILGI-PISDSILN 101

Query: 390 --------------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
                         A  +      T    ++  FN L+ GL    ++  A  LFKKL R 
Sbjct: 102 IVTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVRE 161

Query: 436 GP-EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEI 494
              EPN V Y  ++ GL   G  EK   LL  ME+                    KPD  
Sbjct: 162 KICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQG-----------------NTKPDVR 204

Query: 495 TVSILEELLNKDENCHECMNLLPSFLSRN 523
           T SI+ + L KD N    +NLL     +N
Sbjct: 205 TYSIVIDALCKDINLDAAINLLNEMKQKN 233


>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic-like [Glycine max]
          Length = 556

 Score =  207 bits (528), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 163/570 (28%), Positives = 255/570 (44%), Gaps = 113/570 (19%)

Query: 19  SSLRNSKKPISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYM 78
           S+LR    P SL+      SL   S S     + +L   S++  +   + NDA+  FN M
Sbjct: 4   STLRLRSAP-SLSVSLFRHSLLCYSQSACTRASAMLH--SQSHYNNHNDHNDAVALFNRM 60

Query: 79  IHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGV 138
           + M+P P    FN++L +L   + +   I LS+ L+  G+  D V+LNIL+NCFC +  +
Sbjct: 61  LLMRPPPPTFQFNNILSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNILINCFCHLGQI 120

Query: 139 SDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI----- 193
           + +F  L  IL++ + PDV+TL  LI+GLC++G+  +A       VA + + + I     
Sbjct: 121 TLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVALEFQLDRISYGTL 180

Query: 194 --------------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI 227
                                     P+V+ Y  IID LCK+  V +   L+ +M  + I
Sbjct: 181 INGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQI 240

Query: 228 YPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIIN 287
           YP+   Y +LI  +C         G    A+ L  E    N       +PDV ++  +I+
Sbjct: 241 YPNVVTYTTLIYGFCIM-------GCLIEAVALLNEMKLKN------INPDVYTFSILID 287

Query: 288 SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
           +L K+  +  AK +   M    + PDVV Y+SL+DGY L+  +  A+ +F S+   G  P
Sbjct: 288 ALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTP 347

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------------------ 383
              SY  +I+   K + V+EA+SL+ EM    V P+                        
Sbjct: 348 GVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLV 407

Query: 384 ------------------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
                                   N  + +A  LF+ +   + + D+  +  L+DGLCK 
Sbjct: 408 DKMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMYTYTILIDGLCKG 467

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIE 479
            RL+ A E+F+ L   G   ++ TYTVMI G C  G  ++A  LL  ME+    C+    
Sbjct: 468 GRLKIAQEVFQHLLIKGYHLDIRTYTVMISGFCKAGLFDEALALLSKMED--NGCI---- 521

Query: 480 LLHKMAKRYVKPDEITVSILE-ELLNKDEN 508
                      P+ IT  I+   L  KDEN
Sbjct: 522 -----------PNAITFDIIICALFEKDEN 540



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 115/414 (27%), Positives = 195/414 (47%), Gaps = 30/414 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E+  AL F + ++ ++      S+ +L+  L         I L   L    + PD V  N
Sbjct: 154 EVKKALKFHDDVVALEFQLDRISYGTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYN 213

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           I+++  CK   V +A      +  K   P+VVT   LI G C+ G   EA  L  +    
Sbjct: 214 IIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKL- 272

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
               N+ P+V  ++ +ID L K+G +   +++   M    + PD   YNSL+  Y     
Sbjct: 273 ---KNINPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNE 329

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            + AK              N   + GV   P V SY  +I+ LCK  +VD+A  LF +MK
Sbjct: 330 VKHAK-----------YVFNSMAQSGVT--PGVQSYTIMIDGLCKTKMVDEAISLFEEMK 376

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            + +IP+ + ++SLIDG C  GRI     L   +     + D  +Y++LI++  K   ++
Sbjct: 377 HKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKNCHLD 436

Query: 367 EALSLYGEMISMGVRPD---NSCILE----------AAELFRTLHNTKFELDLTVFNCLV 413
           +A++L+ +MI+  ++PD    + +++          A E+F+ L    + LD+  +  ++
Sbjct: 437 QAIALFKKMITQEIQPDMYTYTILIDGLCKGGRLKIAQEVFQHLLIKGYHLDIRTYTVMI 496

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            G CK+     A  L  K+   G  PN +T+ ++IC L  +   +KA  LL +M
Sbjct: 497 SGFCKAGLFDEALALLSKMEDNGCIPNAITFDIIICALFEKDENDKAEKLLREM 550



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 147/314 (46%), Gaps = 19/314 (6%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGK-KYYVNFICLSERLNTIGLLPDFVSLN 126
           L +A+   N M      P + +F+ L+ AL  + K     I L+  +    + PD V+ N
Sbjct: 260 LIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAY-VKPDVVTYN 318

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ +  +  V  A      + +   +P V +   +I GLC      EA  LF +    
Sbjct: 319 SLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMK-- 376

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
               NVIPN I + S+IDGLCK G +  V  L   M+ R    D   Y+SLI   C   +
Sbjct: 377 --HKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKNCH 434

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            + A       + L ++ +           PD+ +Y  +I+ LCK   +  A+E+F  + 
Sbjct: 435 LDQA-------IALFKKMITQE------IQPDMYTYTILIDGLCKGGRLKIAQEVFQHLL 481

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            +G   D+  Y+ +I G+C  G  D+A  L   +E  GCIP+  +++ +I +  + ++ +
Sbjct: 482 IKGYHLDIRTYTVMISGFCKAGLFDEALALLSKMEDNGCIPNAITFDIIICALFEKDEND 541

Query: 367 EALSLYGEMISMGV 380
           +A  L  EMI+ G+
Sbjct: 542 KAEKLLREMIARGL 555



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 117/287 (40%), Gaps = 31/287 (10%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGA------LAGKKYYVNFICLSERLNTIGL 118
           E ++  A      M+     P + ++NSL+        +   KY  N +  S      G+
Sbjct: 292 EGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQS------GV 345

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
            P   S  I+++  CK   V +A      +  K   P+ +T   LI GLC  G+      
Sbjct: 346 TPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWD 405

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           L  K        + + +VI Y+S+ID LCK+  +++   LF  M  + I PD + Y  LI
Sbjct: 406 LVDKMR----DRSQLADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMYTYTILI 461

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEF-VNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
              C         G    A E+ +   + G        H D+ +Y  +I+  CK  L D+
Sbjct: 462 DGLC-------KGGRLKIAQEVFQHLLIKGY-------HLDIRTYTVMISGFCKAGLFDE 507

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           A  L   M+  G IP+ + +  +I         D A KL   + + G
Sbjct: 508 ALALLSKMEDNGCIPNAITFDIIICALFEKDENDKAEKLLREMIARG 554


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  207 bits (528), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 140/482 (29%), Positives = 225/482 (46%), Gaps = 92/482 (19%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           LNDA+  FN M+ M+P P +  F  +LG+L   K+Y   I L +R+   G+  ++++LNI
Sbjct: 30  LNDAIDSFNRMLRMRPPPPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLNI 89

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N +C +  ++ AF    +IL+  + PD++T   LIRGLC+ G+  E+     + V+  
Sbjct: 90  LINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQG 149

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
            + + +                               P+V+ Y +IIDGLCKD  V    
Sbjct: 150 IKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAF 209

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            L+ +M  + ++P+   Y SLI  +C         G    A  L  E V  N       +
Sbjct: 210 DLYCEMFEKRVFPNVVTYTSLIYGFCIV-------GQLDKAFGLLNEMVLKN------VN 256

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL---------- 326
           P+V ++ ++++ LCK+  + +AK L   M   G+ PDV  Y++L+DGY L          
Sbjct: 257 PNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNV 316

Query: 327 -------------------------MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
                                    M  +D+A  LF  + +E  IPD  +Y++LI+   K
Sbjct: 317 FNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCK 376

Query: 362 IEKVEEALSLYGEMISMGVRP---------DNSC----ILEAAELFRTLHNTKFELDLTV 408
             ++  AL    EM   G  P         D  C    + +A  L + + +   + ++  
Sbjct: 377 SGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYT 436

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +N LVDGLCK  RL  A ++F+ L   G   +VVTY++MI GLC E   ++A  LL  ME
Sbjct: 437 YNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKESLFDEALTLLSKME 496

Query: 469 EK 470
           +K
Sbjct: 497 DK 498



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 113/361 (31%), Positives = 179/361 (49%), Gaps = 30/361 (8%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V  N +++  CK   V DAF     +  K   P+VVT   LI G C+ G+  +A GL
Sbjct: 187 PDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGL 246

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             + V      NV PNV  + +++DGLCK+G + + + L   M   G+ PD F YN+L+ 
Sbjct: 247 LNEMVL----KNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMD 302

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            Y        AK              N   ++GV C  DV SY  +I+ L K  ++D+A 
Sbjct: 303 GYFLVKEAGKAK-----------NVFNIMAQMGVTC--DVHSYSVMISGLSKMKMLDEAM 349

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           +LF  M++  +IPDVV YSSLIDG C  GRI+ A K    +   G  P+  +Y +LI++ 
Sbjct: 350 DLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDAL 409

Query: 360 SKIEKVEEALSLYGEMISMGVRP---------DNSC----ILEAAELFRTLHNTKFELDL 406
            K  +V++A++L  ++   G++          D  C    + +A ++F+ L      +D+
Sbjct: 410 CKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDV 469

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             ++ +++GLCK      A  L  K+   G  P+ + Y  +I     +   +KA  LL +
Sbjct: 470 VTYSIMINGLCKESLFDEALTLLSKMEDKGCVPDAIAYETIINAFFEKDMNDKAEKLLRE 529

Query: 467 M 467
           M
Sbjct: 530 M 530



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 149/321 (46%), Gaps = 21/321 (6%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L+ A    N M+     P + +FN+L+  L  +        L   +   G+ PD  + N
Sbjct: 239 QLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYN 298

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            LM+ +  +     A      + +   + DV +   +I GL       EA  LF      
Sbjct: 299 ALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMR-- 356

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
               NVIP+V+ Y+S+IDGLCK G +N       +M  RG  P+   Y SLI   C    
Sbjct: 357 --NENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALC---- 410

Query: 247 WEDAKGNTSAAL--ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
            +  + + + AL  ++ ++ +  N          + +Y  +++ LCKD  +  A+++F D
Sbjct: 411 -KSHQVDKAIALLKKIKDQGIQAN----------MYTYNILVDGLCKDGRLTDAQKVFQD 459

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           +  +G   DVV YS +I+G C     D+A  L   +E +GC+PD  +Y T+IN++ + + 
Sbjct: 460 LLMKGHNVDVVTYSIMINGLCKESLFDEALTLLSKMEDKGCVPDAIAYETIINAFFEKDM 519

Query: 365 VEEALSLYGEMISMGVRPDNS 385
            ++A  L  EMI      DN 
Sbjct: 520 NDKAEKLLREMIDCVDYKDNG 540


>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 525

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 138/456 (30%), Positives = 224/456 (49%), Gaps = 68/456 (14%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGL-LPDFVSLN 126
            +DA+  F+ M+H+ P P + S N LL ++   K+Y   + L   L++ G   P  V+L+
Sbjct: 36  FDDAVSTFHRMLHLHPPPSIVSLNKLLSSIMKTKHYPTVVSLCSHLDSKGTPKPSLVTLS 95

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF----TK 182
           I +N    +  +  AF  + +I+++ F  D  TL  L++GLC++G+  EA  L+    +K
Sbjct: 96  IFINSLTHLGQMGLAFSVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALNLYDHAVSK 155

Query: 183 FVAFD-----------CR----------------PNVIPNVICYASIIDGLCKDGFVNKV 215
             +FD           C+                  V PN+I Y  ++DGLCK+G V + 
Sbjct: 156 GFSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLCKEGLVTEA 215

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA---------KGNTSAALELHEEFVN 266
             L  +M G+GI  D F YNSLI  +C A  ++ A         K +    +      V+
Sbjct: 216 CGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNILVD 275

Query: 267 GNGELGVICH--------------PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
              +LG++                PDV+S  +++N  C    + +AKE+F  M  RG +P
Sbjct: 276 ALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKLP 335

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
           +V+ YS+LI+GYC +  +D+A +L   +     +PDT +YN L++  SK  +V     L 
Sbjct: 336 NVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWDLV 395

Query: 373 GEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
             M + G  PD               C+ +A  LF+ + +T    ++  +N L+DGLCK 
Sbjct: 396 EAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGISPNIRTYNILIDGLCKG 455

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            R+++A E+F+ L   G  PN+ TY +MI GL  EG
Sbjct: 456 GRMKAAKEIFQLLSVKGCRPNIRTYNIMINGLRREG 491



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 152/296 (51%), Gaps = 18/296 (6%)

Query: 89  SFNSLLGALAGKKYYVNFI-CLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGR 147
           ++NSL+    G   +   +  L+E +    + PD  + NIL++  CK+  V++A    G 
Sbjct: 233 TYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNILVDALCKLGMVAEARNVFGL 292

Query: 148 ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207
           ++++   PDVV+   L+ G C++G  +EA  +F + V        +PNVI Y+++I+G C
Sbjct: 293 MIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMV----ERGKLPNVISYSTLINGYC 348

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
           K   V++   L  +M  R + PD   YN       C ++     G      +L E  +  
Sbjct: 349 KVKMVDEALRLLTEMHQRNLVPDTVTYN-------CLLDGLSKSGRVLYEWDLVEA-MRA 400

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
           +G+      PD+++Y  +++   K   +DKA  LF  +   GI P++  Y+ LIDG C  
Sbjct: 401 SGQ-----APDLITYNVLLDDYLKRECLDKALALFQHIVDTGISPNIRTYNILIDGLCKG 455

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           GR+  A+++F  +  +GC P+  +YN +IN   +   ++EA +L  EM+  G  P+
Sbjct: 456 GRMKAAKEIFQLLSVKGCRPNIRTYNIMINGLRREGLLDEAEALLLEMVDDGFPPN 511



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 119/279 (42%), Gaps = 32/279 (11%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P +++    INSL     +  A  +   +  RG   D    ++L+ G CL GR  +A  L
Sbjct: 89  PSLVTLSIFINSLTHLGQMGLAFSVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALNL 148

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC- 386
           +    S+G   D   Y TLIN   K+ K  +A+ L  +M   GVRP         D  C 
Sbjct: 149 YDHAVSKGFSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLCK 208

Query: 387 ---ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP-RYGPEPNVV 442
              + EA  L   +      +D+  +N L+ G C + + + A  L  ++  +    P+V 
Sbjct: 209 EGLVTEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVY 268

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEEK-----------------IRECL-KAIELLHKM 484
           T+ +++  LC  G + +A ++   M ++                 +R C+ +A E+  +M
Sbjct: 269 TFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRM 328

Query: 485 AKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
            +R   P+ I+ S L     K +   E + LL     RN
Sbjct: 329 VERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRN 367


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 145/590 (24%), Positives = 266/590 (45%), Gaps = 148/590 (25%)

Query: 59  ENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGL 118
            N  S  ++++DA+  F  M+  +P P +  FN LL A+A    +   I L E++ T+G+
Sbjct: 55  RNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGI 114

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
             D  + +I +NCFC+   +S A   L ++++  + PD+VTL  L+ G C   + ++A  
Sbjct: 115 SHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVA 174

Query: 179 LFTKFVAFDCRPNVI-------------------------------PNVICYASIIDGLC 207
           L  + V    +P+                                 P+++ Y ++++GLC
Sbjct: 175 LVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLC 234

Query: 208 KDG-------FVNKVRV----------------------------LFLDMKGRGIYPDAF 232
           K G        +NK+                              LF +M+ +GI P+  
Sbjct: 235 KRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVV 294

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            YNSLI   C    W DA    S  LE                +P+V+++ ++I++  K+
Sbjct: 295 TYNSLINCLCNYGRWSDASRLLSNMLEKK-------------INPNVVTFNALIDAFFKE 341

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             + +A++L  +M  R I PD + Y+ LI+G+C+  R+D+A+++F  + S+ C+P+  +Y
Sbjct: 342 GKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTY 401

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDN---SCILE-------------------- 389
           NTLIN + K ++VE+ + L+ EM   G+  +    + I++                    
Sbjct: 402 NTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVS 461

Query: 390 -------------------------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
                                    A  +F+ L  ++ EL++ ++N +++G+CK+ ++  
Sbjct: 462 NRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGE 521

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE--------------- 469
           AW+LF  L     +P+VVTY  MI GLC +  +++A DL   M+E               
Sbjct: 522 AWDLFCSLS---IKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIR 578

Query: 470 -KIRECLKA--IELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
             +R+C +A   EL+ +M       D  T+S++  +L+        +N+L
Sbjct: 579 ANLRDCDRAASAELIKEMRSSGFVGDASTISLVTNMLHDGRLDKSFLNML 628


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 130/436 (29%), Positives = 215/436 (49%), Gaps = 68/436 (15%)

Query: 68  LNDALCFFNYMIHMQ-PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           L+DA+  FN+++HM   TP +  FN +L +L    ++   I  S+++   G+ P+  + N
Sbjct: 33  LDDAVSSFNHILHMNNHTPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFN 92

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA----SGLFTK 182
           IL+NCF  +  ++ AF  + +IL+  + PD VT+  L+RGLC+ GK  EA      +  K
Sbjct: 93  ILINCFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRK 152

Query: 183 FVAFD-----------CRPN-----------------VIPNVICYASIIDGLCKDGFVNK 214
               D           C+                   V P+VI Y +IID  CKD  V  
Sbjct: 153 RFHLDQVSYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVID 212

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
              L+ +M  + IYP+   +NSLI  +C     ++A G       L+E  +N        
Sbjct: 213 AYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVG------LLNEMSLNN------- 259

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
            +P+V ++  +I+ LCK+  V KA  +   M  +G+ P+VV Y+SL+DGY L+  ++ A+
Sbjct: 260 VNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAK 319

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
            +F +I   G  P+  SY+ +IN   K + V+EA+ L+ EM    + P+           
Sbjct: 320 HVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNT---------- 369

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
                         ++ L+DGLCKS R+   W+L  ++   G   N++TY  ++ GLC  
Sbjct: 370 ------------VTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKN 417

Query: 455 GGIEKAYDLLPDMEEK 470
             ++KA  LL  M+++
Sbjct: 418 HQVDKAIALLTKMKDE 433



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 139/460 (30%), Positives = 216/460 (46%), Gaps = 57/460 (12%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL-PDFVSL 125
           ++ +AL F +++I  +      S+ +L+  L         + L  ++  + L+ PD +  
Sbjct: 138 KVKEALNFHDHVIRKRFHLDQVSYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIMY 197

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
             +++ FCK   V DA+     ++ K   P+VVT   LI G C+ G+  EA GL  +   
Sbjct: 198 TAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEM-- 255

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
                NV PNV  +  +IDGLCK+G V K   +   M  +G+ P+   Y SL+  Y    
Sbjct: 256 --SLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVK 313

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
               AK              N     GV   P+V SY  +IN LCK+ +VD+A +LF +M
Sbjct: 314 EVNKAK-----------HVFNTISLRGVT--PNVHSYSVMINGLCKNKMVDEAVKLFKEM 360

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
             + + P+ V YSSLIDG C  GRI D   L   I + G   +  +YN+L+N   K  +V
Sbjct: 361 HLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQV 420

Query: 366 EEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
           ++A++L  +M   G++P                      D++ +  LVDGLCK+ RL+ A
Sbjct: 421 DKAIALLTKMKDEGIQP----------------------DMSTYTTLVDGLCKNGRLKDA 458

Query: 426 WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMA 485
             +++ L   G   N+  YTVMI GLC EG  ++A  LL  ME+    C+          
Sbjct: 459 QRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMED--NGCM---------- 506

Query: 486 KRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQE 525
                PD +T   L   L K+    + + LL   ++R  +
Sbjct: 507 -----PDAVTYETLISALFKNNKNGKAVKLLREMIARESD 541


>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 498

 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 141/472 (29%), Positives = 231/472 (48%), Gaps = 74/472 (15%)

Query: 75  FNYMIHMQ-PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
           FN ++H + PTP +  F  +LG+L     Y   I L  ++   G+  + V+LNIL+NCF 
Sbjct: 47  FNRLLHQKNPTPPIFEFGKILGSLVKINCYHTAISLHRQMELKGIASNLVTLNILINCFS 106

Query: 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG----------KFTEASGLFTKF 183
           ++     +F     IL+K + P+V+TL  LI+GLC++           K  +A       
Sbjct: 107 QLGQNPLSFSVFANILKKGYDPNVITLTTLIKGLCLKVSYGTLINGLCKVGQARAALQLL 166

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
              D +  V PNV+ Y +IID +CK   VN+   L+ +M   GI PD   Y++LI  +  
Sbjct: 167 RRVDGKL-VQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFFI 225

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
               +DA       ++L  + +  N        PDV ++  +++  CKD  + + K +F 
Sbjct: 226 VGKLKDA-------IDLFNKMILEN------IKPDVYTFNILVDGFCKDGKMKEGKTVFA 272

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            M  +GI P+VV Y SL+DGYCL+ +++ A  +F ++   G  PDT SYN +IN + KI+
Sbjct: 273 MMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIK 332

Query: 364 KVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLR 423
           KV+EA++L+ +M    + P                      ++  +  L+DGLCKS ++ 
Sbjct: 333 KVDEAMNLFKKMHCKNIIP----------------------NVVTYTSLIDGLCKSGKIS 370

Query: 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE---------- 473
            A +L  ++   G  P+++TY+ ++  LC    ++KA  LL  +++++ E          
Sbjct: 371 YALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLD 430

Query: 474 -----------CLK-----AIELLHKMAKRYVKPDEITVS-ILEELLNKDEN 508
                      C+K     A+ LL KM      PD  T   I+  L  KDEN
Sbjct: 431 VYAYTVMIQGFCVKGLFNEALALLSKMEDNGRIPDAKTYEIIILSLFKKDEN 482



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 155/336 (46%), Gaps = 48/336 (14%)

Query: 81  MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSD 140
           +QP   M  +N+++ ++   K       L   + + G+ PD V+ + L++ F  +  + D
Sbjct: 174 VQPNVVM--YNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKD 231

Query: 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200
           A     +++ +   PDV T   L+ G C  GK  E   +F    A   +  + PNV+ Y 
Sbjct: 232 AIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVF----AMMMKQGIKPNVVTYC 287

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA---------- 250
           S++DG C    VNK   +F  M   G+ PD   YN +I  +C     ++A          
Sbjct: 288 SLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCK 347

Query: 251 ------------------KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
                              G  S AL+L +E      + GV   PD+++Y SI+++LCK+
Sbjct: 348 NIIPNVVTYTSLIDGLCKSGKISYALKLVDEM----HDRGV--PPDIITYSSILDALCKN 401

Query: 293 VLVDKA--------KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
             VDKA         ++F D+  +G   DV  Y+ +I G+C+ G  ++A  L   +E  G
Sbjct: 402 HQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMIQGFCVKGLFNEALALLSKMEDNG 461

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
            IPD  +Y  +I S  K ++ + A  L  EMI+ G+
Sbjct: 462 RIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGL 497



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 118/244 (48%), Gaps = 39/244 (15%)

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           +SY ++IN LCK      A +L   +  + + P+VV+Y+++ID  C +  +++A  L+  
Sbjct: 144 VSYGTLINGLCKVGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSE 203

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN 399
           + SEG  PD  +Y+ LI+ +  + K+++A+ L+ +MI   ++PD                
Sbjct: 204 MVSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPD---------------- 247

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
                 +  FN LVDG CK  +++    +F  + + G +PNVVTY  ++ G C+      
Sbjct: 248 ------VYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCL------ 295

Query: 460 AYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519
                      +++  KA  + + MA+  V PD  + +I+     K +   E MNL    
Sbjct: 296 -----------VKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKM 344

Query: 520 LSRN 523
             +N
Sbjct: 345 HCKN 348



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 126/282 (44%), Gaps = 48/282 (17%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGAL-------AGKKYYVNFI------------ 107
           +L DA+  FN MI     P + +FN L+           GK  +   +            
Sbjct: 228 KLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYC 287

Query: 108 ------CLSERLNTI----------GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRK 151
                 CL +++N            G+ PD  S NI++N FCK+  V +A     ++  K
Sbjct: 288 SLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCK 347

Query: 152 VFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF 211
              P+VVT   LI GLC  GK + A     K V       V P++I Y+SI+D LCK+  
Sbjct: 348 NIIPNVVTYTSLIDGLCKSGKISYA----LKLVDEMHDRGVPPDIITYSSILDALCKNHQ 403

Query: 212 VNKVRVLFLDMKGRGIYPDAFV--YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
           V+K   L   +K + ++ D FV  YN  +  Y   +     KG  + AL L  + +  NG
Sbjct: 404 VDKAIALLTKLKDQ-VFEDLFVKGYNLDVYAYTVMIQGFCVKGLFNEALALLSK-MEDNG 461

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
            +     PD  +Y  II SL K    D A++L  +M +RG++
Sbjct: 462 RI-----PDAKTYEIIILSLFKKDENDMAEKLLREMIARGLL 498



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 104/248 (41%), Gaps = 52/248 (20%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P +  +  I+ SL K      A  L   M+ +GI  ++V  + LI+ +  +G+   +  +
Sbjct: 58  PPIFEFGKILGSLVKINCYHTAISLHRQMELKGIASNLVTLNILINCFSQLGQNPLSFSV 117

Query: 337 FVSIESEGCIPDT-------------SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           F +I  +G  P+               SY TLIN   K+ +   AL L   +    V+P+
Sbjct: 118 FANILKKGYDPNVITLTTLIKGLCLKVSYGTLINGLCKVGQARAALQLLRRVDGKLVQPN 177

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                                 + ++N ++D +CK   +  A++L+ ++   G  P+VVT
Sbjct: 178 ----------------------VVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVT 215

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELL 503
           Y+ +I G  I G ++ A                 I+L +KM    +KPD  T +IL +  
Sbjct: 216 YSALISGFFIVGKLKDA-----------------IDLFNKMILENIKPDVYTFNILVDGF 258

Query: 504 NKDENCHE 511
            KD    E
Sbjct: 259 CKDGKMKE 266


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 119/375 (31%), Positives = 190/375 (50%), Gaps = 41/375 (10%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G   + V+   LMN  C+   V  A   + R++ +   PD VT G ++ G+C  G    A
Sbjct: 5   GCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSA 64

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             +  K         +  NV+ Y++I+D LCKDG   K + +F +M  +GI+P+   YN 
Sbjct: 65  LNMLRKMD----ESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNC 120

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           +I  YC    W DA+       +L  + +  N        PDV+++ ++IN+  K+  V 
Sbjct: 121 MIDGYCSYGKWSDAE-------QLLRDMIERN------IDPDVVTFSALINAFVKEGKVS 167

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A+EL+ +M  R I P  + YSS+IDG+C   R++DA+ +F  + S+GC PD  + NTLI
Sbjct: 168 GAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLI 227

Query: 357 N-----------SYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAE 392
           +            + ++  V  A  L+ EMIS GV PD             N  + +A E
Sbjct: 228 DGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALE 287

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
           +F+    +K +LD    N +++G+CK  ++  AW+LF  LP  G E +VVTY ++I    
Sbjct: 288 MFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFV 347

Query: 453 IEGGIEKAYDLLPDM 467
            EG   +A D+  +M
Sbjct: 348 KEGNFLRAEDIYLEM 362



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 118/480 (24%), Positives = 208/480 (43%), Gaps = 97/480 (20%)

Query: 63  SGEVELNDALCFFNYMIHMQPTPFMPS---FNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           +G  +L D +   N +  M  +    +   +++++  L     ++    +   ++  G+ 
Sbjct: 53  NGMCKLGDTVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIF 112

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ ++ N +++ +C     SDA   L  ++ +   PDVVT   LI     +GK + A  L
Sbjct: 113 PNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEEL 172

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           + + +    R N+ P  I Y+S+IDG CK   +   + +F  M  +G  PD    N+LI 
Sbjct: 173 YREML----RRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLID 228

Query: 240 VYCCA----VNWEDAKGNTSAALELHEEFV-NGNGELGVICHPDVLSYCS---------- 284
             C A    ++     GN + A +L +E + NG     V C+  +   C           
Sbjct: 229 GCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEM 288

Query: 285 ------------------IINSLCKDVLVDKAKELF------------------------ 302
                             IIN +CK   VD+A +LF                        
Sbjct: 289 FKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVK 348

Query: 303 -----------LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
                      L+M  +GIIP  V Y+S++DG+C   R+++AR++  S+ SEGC PD  +
Sbjct: 349 EGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVT 408

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNC 411
           ++TLI  Y K  +V++ L L+ EM   G+  D                         +N 
Sbjct: 409 FSTLIKGYCKAGRVDDGLELFSEMCQRGLVADT----------------------ITYNA 446

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI 471
           L+ G CK   L  A ++F+++   G  P+ +T+  M+ GLC +  ++K   +L D+++ +
Sbjct: 447 LIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAGLCTKAELQKGLTMLEDLQKSV 506



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 100/390 (25%), Positives = 174/390 (44%), Gaps = 56/390 (14%)

Query: 56  YLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNT 115
           ++ E   SG  EL      +  M+     P   +++S++          +   + + + +
Sbjct: 160 FVKEGKVSGAEEL------YREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVS 213

Query: 116 IGLLPDFVSLNILMNC-----------FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLI 164
            G  PD ++LN L++            FC++  V+ A      ++    SPD+VT   L+
Sbjct: 214 KGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLL 273

Query: 165 RGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224
            GLC  GK  +A  +F  F     +  +  +      II+G+CK   V++   LF  +  
Sbjct: 274 AGLCENGKLEKALEMFKVFQ----KSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSLPV 329

Query: 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCS 284
            G+  D   YN LI V+         +GN   A +++ E +      G+I  P  ++Y S
Sbjct: 330 NGVETDVVTYNILIGVFV-------KEGNFLRAEDIYLEMLCK----GII--PSTVTYNS 376

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           +++  CK   +++A+++   M S G  PDVV +S+LI GYC  GR+DD  +LF  +   G
Sbjct: 377 MVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELFSEMCQRG 436

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL 404
            + DT +YN LI+ + K+  +  A  ++ EM+S GV PD                     
Sbjct: 437 LVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDT-------------------- 476

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
               F  ++ GLC    L+    + + L +
Sbjct: 477 --ITFRSMLAGLCTKAELQKGLTMLEDLQK 504



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 113/273 (41%), Gaps = 54/273 (19%)

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG------ 328
           C  +V+++ +++N LC++  V +A  L   M   G  PD V Y ++++G C +G      
Sbjct: 6   CPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSAL 65

Query: 329 ----RIDD-------------------------ARKLFVSIESEGCIPDTSSYNTLINSY 359
               ++D+                         A+ +F  +  +G  P+  +YN +I+ Y
Sbjct: 66  NMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDGY 125

Query: 360 SKIEKVEEALSLYGEMISMGVRPD--------NSCILE-----AAELFRTLHNTKFELDL 406
               K  +A  L  +MI   + PD        N+ + E     A EL+R +         
Sbjct: 126 CSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTT 185

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             ++ ++DG CK  RL  A  +F  +   G  P+++T   +I G C      +A   L  
Sbjct: 186 ITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCC------RAKRHLIH 239

Query: 467 MEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
              ++     A +L  +M    V PD +T + L
Sbjct: 240 GFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTL 272



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 90/219 (41%), Gaps = 39/219 (17%)

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M   G   +VV +++L++G C  GR+  A  L   +  EG  PD  +Y T++N   K+  
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKL-- 58

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
                   G+ +S            A  + R +  ++ + ++ +++ +VD LCK      
Sbjct: 59  --------GDTVS------------ALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIK 98

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKM 484
           A  +F ++   G  PNV+TY  MI G C  G    A  LL DM E               
Sbjct: 99  AQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIE--------------- 143

Query: 485 AKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
             R + PD +T S L     K+        L    L RN
Sbjct: 144 --RNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRN 180


>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 512

 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 130/454 (28%), Positives = 226/454 (49%), Gaps = 58/454 (12%)

Query: 59  ENSKSGEVELNDALCFFNYMIHMQ-PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIG 117
            NS +   +L++ +  FN+++H + PTP +  F  +LG+L    +Y   + L  ++   G
Sbjct: 40  SNSTTLYSQLHNLVSSFNHLLHQKNPTPSIIQFGKILGSLVKANHYSIVVSLHRQMEFNG 99

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           +  + V+L+IL+NCF ++   S +F     IL+K + PD +TL  LI+GLC++G   +A 
Sbjct: 100 IASNLVTLSILINCFSQLGHNSLSFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKAL 159

Query: 178 GLFTKFVAFDCRPNVIP-------------------------------NVICYASIIDGL 206
               K +A   + N +                                +V+ Y +IIDG+
Sbjct: 160 HFHDKVLALGFQLNQVSYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGV 219

Query: 207 CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266
           CKD  VN     + +M  + I P    YN+LI   C     +DA G       LH+  + 
Sbjct: 220 CKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIG------LLHKMILE 273

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
                    +P V ++  ++++ CK+  V +AK +F+ M  + + P++V Y+SL++GYCL
Sbjct: 274 N-------INPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCL 326

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--- 383
           +  ++ A  +F ++   G  PD  SY+ +I+ + KI+ V+EA+ L+ EM    + PD   
Sbjct: 327 VNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVT 386

Query: 384 -NSC---------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
            NS          I  A +L   +H+     ++  +N L+D LCK+  +  A EL  KL 
Sbjct: 387 YNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLK 446

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            +  +P+V TY ++I GLC  G ++ A  +  D+
Sbjct: 447 DHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDV 480



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/294 (30%), Positives = 151/294 (51%), Gaps = 17/294 (5%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +NDA  F++ M+  +  P + ++N+L+  L       + I L  ++    + P   + +I
Sbjct: 225 VNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSI 284

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++ FCK   V +A      +++K   P++VT   L+ G C+  +  +A  +F       
Sbjct: 285 LVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTM---- 340

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            +  V P+V  Y+ +I G CK   V++   LF +M  + I+PD   YNSLI   C     
Sbjct: 341 AQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLC----- 395

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               G  S AL+L  E ++  G+      P++++Y S++++LCK+  VDKA EL   +K 
Sbjct: 396 --KSGRISYALKLIGE-MHDRGQ-----PPNIITYNSLLDALCKNHHVDKAIELLTKLKD 447

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
             I P V  Y+ LI+G C  GR+ DA+K+F  +   G   D  +YNT+I  + K
Sbjct: 448 HNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFCK 501



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 152/320 (47%), Gaps = 48/320 (15%)

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           D V  N +++  CK   V+DAF     ++ K   P VVT   LI GLC+ G+  +A GL 
Sbjct: 208 DVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLL 267

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            K +      N+ P V  ++ ++D  CK+G V + + +F+ M  + + P+   YNSL+  
Sbjct: 268 HKMIL----ENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNG 323

Query: 241 YCCA--VNWEDAKGNTSAAL----ELHEE--FVNGNGELGVI--------------CHPD 278
           YC    VN  ++  NT A +    ++H     ++G  ++ ++                PD
Sbjct: 324 YCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPD 383

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
           V++Y S+I+ LCK   +  A +L  +M  RG  P+++ Y+SL+D  C    +D A +L  
Sbjct: 384 VVTYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLT 443

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398
            ++     P   +YN LIN   K  ++++A  ++ +++  G                   
Sbjct: 444 KLKDHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNG------------------- 484

Query: 399 NTKFELDLTVFNCLVDGLCK 418
              + +D+  +N ++ G CK
Sbjct: 485 ---YNIDVYTYNTMIKGFCK 501



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 100/231 (43%), Gaps = 39/231 (16%)

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            +F ++  +G  PD +  ++LI G CL G I  A      + + G   +  SY TLIN  
Sbjct: 125 SVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQVSYRTLINGL 184

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            K+ + + AL                      E+ R +      LD+ ++N ++DG+CK 
Sbjct: 185 CKVGQTKAAL----------------------EMLRRIDGKLVRLDVVMYNTIIDGVCKD 222

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIE 479
             +  A++ + ++      P VVTY  +ICGLCI G ++ A                 I 
Sbjct: 223 KLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDA-----------------IG 265

Query: 480 LLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           LLHKM    + P   T SIL +   K+    E  N+    + ++ + + +T
Sbjct: 266 LLHKMILENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVT 316



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 4/176 (2%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E+N A   FN M  +   P + S++ ++      K     + L E ++   + PD V+ N
Sbjct: 329 EVNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYN 388

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++  CK   +S A   +G +  +   P+++T   L+  LC      +A  L TK    
Sbjct: 389 SLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLK-- 446

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
               N+ P+V  Y  +I+GLCK G +   + +F D+   G   D + YN++I+ +C
Sbjct: 447 --DHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFC 500



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 8/147 (5%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIGLLPDFVSL 125
           +++A+  F  M   Q  P + ++NSL+  L  +G+  Y   + L   ++  G  P+ ++ 
Sbjct: 365 VDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYA--LKLIGEMHDRGQPPNIITY 422

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           N L++  CK   V  A   L ++      P V T   LI GLC  G+  +A  +F   + 
Sbjct: 423 NSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLV 482

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFV 212
                +V      Y ++I G CK GFV
Sbjct: 483 NGYNIDVYT----YNTMIKGFCKKGFV 505


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  205 bits (521), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 138/473 (29%), Positives = 235/473 (49%), Gaps = 49/473 (10%)

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
            +++  M   P + ++ +L+ A A  K     + L E +   G  P+ V+ N+L++  CK
Sbjct: 167 MDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCK 226

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
           +  V  A   + +++   F+P+V+T   L+ G C +G   +A  L    VA   R    P
Sbjct: 227 LSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMR----P 282

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           NV+ Y+++IDGLCK     + + +  +MK RG+ PDAF Y++LI   C A   E+A    
Sbjct: 283 NVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEA---- 338

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
               E     + G+G     C PDV+ Y SII++ CK   + +A++   +M+ +   PDV
Sbjct: 339 ----EQMLRRMAGSG-----CTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDV 389

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEG-CIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           V Y+++IDG C +G+I +A+ +   ++  G  +PD  +Y+T+IN   K + + EA  L  
Sbjct: 390 VTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLD 449

Query: 374 EMISMGVRPD----NSCI--------LEAAE-LFRTLHNTKFELDLTVFNCLVDGLCKSW 420
            M   G  PD     + I        LE AE L + +       ++  +  L+ GLCK+ 
Sbjct: 450 RMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKAR 509

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIEL 480
           ++  A  + +++   G  PN+VTY  M+ GLC+ G I++A  L+  M++   EC      
Sbjct: 510 KVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAEC------ 563

Query: 481 LHKMAKRYVKPDEITV-SILEELLNKD--ENCHECMNLLPSFLSRNQEESKLT 530
                     PD  T  +I+  L++ D  +   + +  + S  S  QE+  LT
Sbjct: 564 ---------SPDAATYRTIVNALMSSDLVQEAEQLLEQMKSTTSSQQEQGSLT 607



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 104/414 (25%), Positives = 176/414 (42%), Gaps = 87/414 (21%)

Query: 153 FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFV 212
           FS    +   L++ L    K  EA  LF   +   C P+V      Y  +I G C  G +
Sbjct: 73  FSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCS----YNIVISGFCNAGDL 128

Query: 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
           +    L  +MK  G  PDAF +  +I     A + + A  +  +              +G
Sbjct: 129 HAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRS--------------MG 174

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY--------------- 317
             C P+V++Y ++I +  +   +++A +L  +M+ RG  P++V Y               
Sbjct: 175 --CDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGA 232

Query: 318 --------------------SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
                               +SL+DG+C  G +DDARKL   + ++G  P+  +Y+ LI+
Sbjct: 233 AQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALID 292

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFEL 404
              K +K  EA  +  EM + GV PD                I EA ++ R +  +    
Sbjct: 293 GLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTP 352

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           D+ V++ ++   CKS +L  A +  +++ +    P+VVTY  +I GLC  G I +A  +L
Sbjct: 353 DVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVIL 412

Query: 465 PDMEE-------------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
             M+E                   K    ++A +LL +M K    PD +T + +
Sbjct: 413 EQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTI 466


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 121/369 (32%), Positives = 187/369 (50%), Gaps = 56/369 (15%)

Query: 148 ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207
           ++ + + PDV T   +I GLC  G+   A+GLF K     C+P+V+     Y++IID LC
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVT----YSTIIDSLC 56

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
           KD  VN+   +F  MK +GI P+ F YNSLI+  C    W +A    +  + L+      
Sbjct: 57  KDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLN------ 110

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
                    P+++++  +IN  CK+  V +A+ +   M   G+ P+VV YSSL++GY L 
Sbjct: 111 -------IMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQ 163

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
             + +ARKLF  + ++GC PD  SYN LIN Y K +++ EA  L+ EMI  G+ P     
Sbjct: 164 AEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTP----- 218

Query: 388 LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
                            D+  +N L+DGLC+  RLR A +LFK +   G  P++ TY+++
Sbjct: 219 -----------------DIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSIL 261

Query: 448 ICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDE 507
           + G C +G + KA+                  L   M   Y+KP+ +  +IL + + K  
Sbjct: 262 LDGFCKQGYLAKAF-----------------RLFRAMQSTYLKPNMVMYNILIDAMCKSR 304

Query: 508 NCHECMNLL 516
           N  E   L 
Sbjct: 305 NLKEARKLF 313



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 183/364 (50%), Gaps = 39/364 (10%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           M+     P + ++ +++  L      V    L +++   G  PD V+ + +++  CK   
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           V++A      +  K  SP++ T   LI+GLC   ++ EAS +  + ++     N++PN++
Sbjct: 61  VNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSL----NIMPNIV 116

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            ++ +I+  CK+G V + R +   M   G+ P+   Y+SL+  Y       +A+      
Sbjct: 117 TFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEAR------ 170

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
            +L +  +         C PDV SY  +IN  CK   + +AK+LF +M  +G+ PD+V Y
Sbjct: 171 -KLFDVMITKG------CKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSY 223

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           ++LIDG C +GR+ +A  LF ++ + G +PD  +Y+ L++ + K                
Sbjct: 224 NTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCK---------------- 267

Query: 378 MGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
                    + +A  LFR + +T  + ++ ++N L+D +CKS  L+ A +LF +L   G 
Sbjct: 268 ------QGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGL 321

Query: 438 EPNV 441
           +PN+
Sbjct: 322 QPNM 325



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 140/288 (48%), Gaps = 21/288 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            +N+AL  F+YM     +P + ++NSL+  L     +     +   + ++ ++P+ V+ +
Sbjct: 60  RVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFS 119

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +L+N FCK   V +A   L  +      P+VVT   L+ G  +Q +  EA  LF   +  
Sbjct: 120 LLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITK 179

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C+P+V      Y  +I+G CK   + + + LF +M  +G+ PD   YN+LI   C    
Sbjct: 180 GCKPDVFS----YNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLC---- 231

Query: 247 WEDAKGNTSAALELHEEFVN--GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                       E H+ F N   NG L     PD+ +Y  +++  CK   + KA  LF  
Sbjct: 232 ------QLGRLREAHDLFKNMLTNGNL-----PDLCTYSILLDGFCKQGYLAKAFRLFRA 280

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
           M+S  + P++V+Y+ LID  C    + +ARKLF  +  +G  P+   +
Sbjct: 281 MQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNMKHW 328



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 118/248 (47%), Gaps = 31/248 (12%)

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M +RG  PDV  Y+++I+G C +G    A  LF  +   GC PD  +Y+T+I+S  K  +
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60

Query: 365 VEEALSLYGEMISMGVRPD----NSCIL---------EAAELFRTLHNTKFELDLTVFNC 411
           V EAL ++  M + G+ P+    NS I          EA+ +   + +     ++  F+ 
Sbjct: 61  VNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSL 120

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA----------- 460
           L++  CK   +  A  + K +   G EPNVVTY+ ++ G  ++  + +A           
Sbjct: 121 LINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKG 180

Query: 461 -------YDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECM 513
                  Y++L +   K +   +A +L ++M  + + PD ++ + L + L +     E  
Sbjct: 181 CKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAH 240

Query: 514 NLLPSFLS 521
           +L  + L+
Sbjct: 241 DLFKNMLT 248


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  204 bits (519), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 140/500 (28%), Positives = 230/500 (46%), Gaps = 74/500 (14%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++DA+  FN M+ + P P    F+ LLGA+    +Y   I L  +L + G+ P   +  I
Sbjct: 36  VDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTI 95

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA----SGLFTKF 183
           L+NC+      + AF  L  IL+  + P++VT   +I G C+ G   +A      L  + 
Sbjct: 96  LINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQG 155

Query: 184 VAFDC---------------------------RPNVIPNVICYASIIDGLCKDGFVNKVR 216
             FD                            + +V PN++ Y+++IDGLCKDGFV+   
Sbjct: 156 YLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDAL 215

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            L   +  RGI  DA  YNSLI   C    W++         +L  + V  N +      
Sbjct: 216 GLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVT-------QLLTKMVRENVD------ 262

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PD  ++  +I++LCK+  + +A+ +   M  RG  PD+V Y++L++GYC    + +AR+L
Sbjct: 263 PDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEAREL 322

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC- 386
           F  +   G  PD  +YN LI+ Y K + V+EA+ L+ E+ +  + P         D  C 
Sbjct: 323 FNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCN 382

Query: 387 ---ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
              I    +L   +H +    D+  +N L+D LCK  R+  A  +   + + G +PN+VT
Sbjct: 383 SGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVT 442

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELL 503
           Y  M+ G C+   +  A D                 + ++M K  ++PD +  ++L    
Sbjct: 443 YNAMMDGYCLRNNVNVAKD-----------------IFNRMVKSGLEPDILNYNVLINGY 485

Query: 504 NKDENCHECMNLLPSFLSRN 523
            K E   E + L      +N
Sbjct: 486 CKTEMVDEAIVLFKEMRHKN 505



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 130/481 (27%), Positives = 218/481 (45%), Gaps = 75/481 (15%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           SK+G+++   AL     M      P +  +++L+  L    +  + + L  ++   G+L 
Sbjct: 171 SKNGQIKA--ALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILL 228

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           D V+ N L++  C +    +    L +++R+   PD  T   LI  LC +G+  EA G+ 
Sbjct: 229 DAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGV- 287

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
              +A   +    P+++ Y ++++G C    V++ R LF  M  RG+ PD   YN LI  
Sbjct: 288 ---LAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDG 344

Query: 241 YCCAVNWEDA--------KGNTSAALELHEEFVNGNGELGVICH--------------PD 278
           YC     ++A          N    +  +   ++G    G I H              PD
Sbjct: 345 YCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPD 404

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
           V++Y  +I++LCK+  + +A  + + M  +G+ P++V Y++++DGYCL   ++ A+ +F 
Sbjct: 405 VVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFN 464

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCILEAAELF 394
            +   G  PD  +YN LIN Y K E V+EA+ L+ EM    + PD    NS I     L 
Sbjct: 465 RMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLG 524

Query: 395 RTLH-----------------------------NTKFELDLTVF--------------NC 411
           R  H                                F+  +++F              + 
Sbjct: 525 RIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVEGIWPDFYTNHA 584

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI 471
           +VD LCK  +L+ A +  K L  +G  PNV TYT++I  LC +G   +A  LL  ME+  
Sbjct: 585 IVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDND 644

Query: 472 R 472
           R
Sbjct: 645 R 645



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 126/464 (27%), Positives = 217/464 (46%), Gaps = 48/464 (10%)

Query: 43  SVSTVEEKTKLL-KYLSENSKSGEVELN---DALCFFNYMIHMQPT----------PFMP 88
           SV   +E T+LL K + EN    +   N   DALC    ++  Q            P + 
Sbjct: 242 SVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIV 301

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N+L+     ++       L  R+   GL PD ++ N+L++ +CK   V +A V    +
Sbjct: 302 TYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKEL 361

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
             K   P + +   LI GLC  G+ +    L  +      +P   P+V+ Y  +ID LCK
Sbjct: 362 CNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHG-SAQP---PDVVTYNILIDALCK 417

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           +G + +   + + M  +G+ P+   YN+++  YC        + N + A ++    V   
Sbjct: 418 EGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCL-------RNNVNVAKDIFNRMVKSG 470

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
            E      PD+L+Y  +IN  CK  +VD+A  LF +M+ + +IPD+  Y+SLIDG C +G
Sbjct: 471 LE------PDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLG 524

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NS 385
           RI   ++L   +   G  PD  +YN L++++ K +  ++A+SL+ +++  G+ PD   N 
Sbjct: 525 RIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNH 583

Query: 386 CILE----------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
            I++          A +  + L       ++  +  L++ LCK      A  L  K+   
Sbjct: 584 AIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDN 643

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIE 479
              P+ +T+ ++I  L      +KA  L    EE I   L  IE
Sbjct: 644 DRPPDAITFEIIIGVLLQRNETDKAEKL---REEMIARGLVNIE 684



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 111/429 (25%), Positives = 176/429 (41%), Gaps = 75/429 (17%)

Query: 133 CKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNV 192
           C+   V DA     R++R    P       L+  +   G +  A  LFT+  +    P++
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 193 I-------------------------------PNVICYASIIDGLCKDGFVNKVRVLFLD 221
                                           PN++ + +II+G C +G + K      +
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN 150

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
           +  +G   D F Y +LI       N     G   AAL L +E    +        P+++ 
Sbjct: 151 LLAQGYLFDQFTYGTLI-------NGLSKNGQIKAALHLLQEMEKSS------VQPNLVM 197

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y ++I+ LCKD  V  A  L   +  RGI+ D V Y+SLIDG C +GR  +  +L   + 
Sbjct: 198 YSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMV 257

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCIL 388
            E   PD  ++N LI++  K  ++ EA  +   M   G +PD                + 
Sbjct: 258 RENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVH 317

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
           EA ELF  +     E D+  +N L+DG CK+  +  A  LFK+L      P + +Y  +I
Sbjct: 318 EARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLI 377

Query: 449 CGLCIEGGIEKAYDLLPDMEEKIR------------------ECLKAIELLHKMAKRYVK 490
            GLC  G I     LL +M    +                    L+A+ +L  M K+ VK
Sbjct: 378 DGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVK 437

Query: 491 PDEITVSIL 499
           P+ +T + +
Sbjct: 438 PNIVTYNAM 446



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 114/272 (41%), Gaps = 31/272 (11%)

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
           C+   VD A   F  M      P   V+  L+     MG    A  LF  ++S+G  P  
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRT 396
           +++  LIN Y        A SL   ++  G +P+             N  I +A +  + 
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN 150

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           L    +  D   +  L++GL K+ ++++A  L +++ +   +PN+V Y+ +I GLC +G 
Sbjct: 151 LLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGF 210

Query: 457 IEKAYDLLPDMEEK------------------IRECLKAIELLHKMAKRYVKPDEITVSI 498
           +  A  L   + E+                  +    +  +LL KM +  V PD+ T +I
Sbjct: 211 VSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNI 270

Query: 499 LEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           L + L K+    E   +L     R ++   +T
Sbjct: 271 LIDALCKEGRILEAQGVLAMMSKRGEKPDIVT 302


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 147/513 (28%), Positives = 244/513 (47%), Gaps = 78/513 (15%)

Query: 68  LNDALCFFNYMIHMQPTPFMP--SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
           ++DA+  FN+++HM+  P  P   FN +L +L    ++   I  S+++    + PD  + 
Sbjct: 44  VDDAVSSFNHILHMR-NPVQPIFEFNKILSSLVKLNHFHTAISFSKQMELKQIQPDLFTF 102

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE---------A 176
           NIL+NCFC +  ++ AF  L +I +  F PD VT+  LI+GLC+ GK  E         A
Sbjct: 103 NILINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVIA 162

Query: 177 SGLFTKFVAFDCRPN----------------------VIPNVICYASIIDGLCKDGFVNK 214
            G     V++    N                      V PNV+ Y +IID LCKD  V  
Sbjct: 163 KGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIH 222

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
              L  +M  + I+PD   Y +LI  Y C +      G    A+ L  + +  N      
Sbjct: 223 ASDLCSEMIVKRIFPDVVTYTTLI--YGCLI-----VGRLKEAVGLFNQMLLKN------ 269

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
             PDV ++  +++ LCK+  + KA+ +   M  +G+  ++V Y+SL+DGY L+ + + A 
Sbjct: 270 IKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKAT 329

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC-------- 386
            +F ++   G  PD  SY+ +IN   K + V+EA++L+ EM S  + P+           
Sbjct: 330 FVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGL 389

Query: 387 -----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
                I +A +L   +HN     D+  ++ L+D LCK+ ++  A  L  K+   G +PN+
Sbjct: 390 LKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNI 449

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDMEEK----------------IRECL--KAIELLHK 483
            TYT+++ GLC  G ++ A  +  D+  K                 +E L  +A+ L+ K
Sbjct: 450 YTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSK 509

Query: 484 MAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           M      PD +T   L   L +++   + + LL
Sbjct: 510 MEDNGCIPDAVTYETLVRALFENDKNDKAVKLL 542



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 144/316 (45%), Gaps = 59/316 (18%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD  + NIL++  CK   +  A   L  ++++    ++VT   L+ G  +  +  +A+ +
Sbjct: 272 PDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFV 331

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F        R  V P+V  Y+ +I+GLCK   V++   LF +M  + + P+   YNSLI 
Sbjct: 332 FNTM----ARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLI- 386

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
                 +     G  S A +L  E  N           DV++Y S++++LCK+  VDKA 
Sbjct: 387 ------DGLLKYGRISDAWDLVNEMHNRGQP------ADVITYSSLLDALCKNHQVDKAI 434

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI------------------- 340
            L   +K +GI P++  Y+ L+DG C  GR+ DA+ ++  +                   
Sbjct: 435 TLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGL 494

Query: 341 ----------------ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
                           E  GCIPD  +Y TL+ +  + +K ++A+ L  EMI  G    +
Sbjct: 495 CKEGLFDEALSLVSKMEDNGCIPDAVTYETLVRALFENDKNDKAVKLLREMIVQGSAVGS 554

Query: 385 S-------CILEAAEL 393
           +       C+ +AA L
Sbjct: 555 NISSNSMLCVYQAAPL 570



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 144/322 (44%), Gaps = 43/322 (13%)

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
           M+ + I PD F +N LI  +C         G+ + A  +  +      +LG   HPD ++
Sbjct: 90  MELKQIQPDLFTFNILINCFCHL-------GHLNFAFSVLAKIF----KLGF--HPDTVT 136

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
             ++I  LC +  V +A     D+ ++G   D V Y +LI+G C  G    A ++   I+
Sbjct: 137 ITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTGETRAALQVLRKID 196

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------NSCIL----- 388
                P+   YNT+I+S  K + V  A  L  EMI   + PD          C++     
Sbjct: 197 GLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLK 256

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
           EA  LF  +     + D+  FN LVDGLCK   ++ A  +   + + G + N+VTY  ++
Sbjct: 257 EAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLM 316

Query: 449 CGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDEN 508
            G  +                 +++  KA  + + MA+R V PD  + SI+   L K + 
Sbjct: 317 DGYFL-----------------VKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKM 359

Query: 509 CHECMNLLPSFLSRNQEESKLT 530
             E +NL     S++   + +T
Sbjct: 360 VDEAVNLFKEMHSKSMAPNTVT 381


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 140/500 (28%), Positives = 230/500 (46%), Gaps = 74/500 (14%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++DA+  FN M+ + P P    F+ LLGA+    +Y   I L  +L + G+ P   +  I
Sbjct: 36  VDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTI 95

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA----SGLFTKF 183
           L+NC+      + AF  L  IL+  + P++VT   +I G C+ G   +A      L  + 
Sbjct: 96  LINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQG 155

Query: 184 VAFDC---------------------------RPNVIPNVICYASIIDGLCKDGFVNKVR 216
             FD                            + +V PN++ Y+++IDGLCKDGFV+   
Sbjct: 156 YLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDAL 215

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            L   +  RGI  DA  YNSLI   C    W++         +L  + V  N +      
Sbjct: 216 GLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVT-------QLLTKMVRENVD------ 262

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PD  ++  +I++LCK+  + +A+ +   M  RG  PD+V Y++L++GYC    + +AR+L
Sbjct: 263 PDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEAREL 322

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC- 386
           F  +   G  PD  +YN LI+ Y K + V+EA+ L+ E+ +  + P         D  C 
Sbjct: 323 FNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCN 382

Query: 387 ---ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
              I    +L   +H +    D+  +N L+D LCK  R+  A  +   + + G +PN+VT
Sbjct: 383 SGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVT 442

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELL 503
           Y  M+ G C+   +  A D                 + ++M K  ++PD +  ++L    
Sbjct: 443 YNAMMDGYCLRNNVNVAKD-----------------IFNRMVKSGLEPDILNYNVLINGY 485

Query: 504 NKDENCHECMNLLPSFLSRN 523
            K E   E + L      +N
Sbjct: 486 CKTEMVDEAIVLFKEMRHKN 505



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 130/481 (27%), Positives = 218/481 (45%), Gaps = 75/481 (15%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           SK+G+++   AL     M      P +  +++L+  L    +  + + L  ++   G+L 
Sbjct: 171 SKNGQIKA--ALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILL 228

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           D V+ N L++  C +    +    L +++R+   PD  T   LI  LC +G+  EA G+ 
Sbjct: 229 DAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGV- 287

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
              +A   +    P+++ Y ++++G C    V++ R LF  M  RG+ PD   YN LI  
Sbjct: 288 ---LAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDG 344

Query: 241 YCCAVNWEDA--------KGNTSAALELHEEFVNGNGELGVICH--------------PD 278
           YC     ++A          N    +  +   ++G    G I H              PD
Sbjct: 345 YCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPD 404

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
           V++Y  +I++LCK+  + +A  + + M  +G+ P++V Y++++DGYCL   ++ A+ +F 
Sbjct: 405 VVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFN 464

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCILEAAELF 394
            +   G  PD  +YN LIN Y K E V+EA+ L+ EM    + PD    NS I     L 
Sbjct: 465 RMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLG 524

Query: 395 RTLH-----------------------------NTKFELDLTVF--------------NC 411
           R  H                                F+  +++F              + 
Sbjct: 525 RIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVEGIWPDFYTNHA 584

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI 471
           +VD LCK  +L+ A +  K L  +G  PNV TYT++I  LC +G   +A  LL  ME+  
Sbjct: 585 IVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDND 644

Query: 472 R 472
           R
Sbjct: 645 R 645



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 126/464 (27%), Positives = 217/464 (46%), Gaps = 48/464 (10%)

Query: 43  SVSTVEEKTKLL-KYLSENSKSGEVELN---DALCFFNYMIHMQPT----------PFMP 88
           SV   +E T+LL K + EN    +   N   DALC    ++  Q            P + 
Sbjct: 242 SVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIV 301

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N+L+     ++       L  R+   GL PD ++ N+L++ +CK   V +A V    +
Sbjct: 302 TYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKEL 361

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
             K   P + +   LI GLC  G+ +    L  +      +P   P+V+ Y  +ID LCK
Sbjct: 362 CNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHG-SAQP---PDVVTYNILIDALCK 417

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           +G + +   + + M  +G+ P+   YN+++  YC        + N + A ++    V   
Sbjct: 418 EGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCL-------RNNVNVAKDIFNRMVKSG 470

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
            E      PD+L+Y  +IN  CK  +VD+A  LF +M+ + +IPD+  Y+SLIDG C +G
Sbjct: 471 LE------PDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLG 524

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NS 385
           RI   ++L   +   G  PD  +YN L++++ K +  ++A+SL+ +++  G+ PD   N 
Sbjct: 525 RIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNH 583

Query: 386 CILE----------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
            I++          A +  + L       ++  +  L++ LCK      A  L  K+   
Sbjct: 584 AIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDN 643

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIE 479
              P+ +T+ ++I  L      +KA  L    EE I   L  IE
Sbjct: 644 DRPPDAITFEIIIGVLLQRNETDKAEKL---REEMIARGLVNIE 684



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 111/429 (25%), Positives = 176/429 (41%), Gaps = 75/429 (17%)

Query: 133 CKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNV 192
           C+   V DA     R++R    P       L+  +   G +  A  LFT+  +    P++
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 193 I-------------------------------PNVICYASIIDGLCKDGFVNKVRVLFLD 221
                                           PN++ + +II+G C +G + K      +
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN 150

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
           +  +G   D F Y +LI       N     G   AAL L +E    +        P+++ 
Sbjct: 151 LLAQGYLFDQFTYGTLI-------NGLSKNGQIKAALHLLQEMEKSS------VQPNLVM 197

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y ++I+ LCKD  V  A  L   +  RGI+ D V Y+SLIDG C +GR  +  +L   + 
Sbjct: 198 YSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMV 257

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCIL 388
            E   PD  ++N LI++  K  ++ EA  +   M   G +PD                + 
Sbjct: 258 RENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVH 317

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
           EA ELF  +     E D+  +N L+DG CK+  +  A  LFK+L      P + +Y  +I
Sbjct: 318 EARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLI 377

Query: 449 CGLCIEGGIEKAYDLLPDMEEKIR------------------ECLKAIELLHKMAKRYVK 490
            GLC  G I     LL +M    +                    L+A+ +L  M K+ VK
Sbjct: 378 DGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVK 437

Query: 491 PDEITVSIL 499
           P+ +T + +
Sbjct: 438 PNIVTYNAM 446



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 114/272 (41%), Gaps = 31/272 (11%)

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
           C+   VD A   F  M      P   V+  L+     MG    A  LF  ++S+G  P  
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRT 396
           +++  LIN Y        A SL   ++  G +P+             N  I +A +  + 
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN 150

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           L    +  D   +  L++GL K+ ++++A  L +++ +   +PN+V Y+ +I GLC +G 
Sbjct: 151 LLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGF 210

Query: 457 IEKAYDLLPDMEEK------------------IRECLKAIELLHKMAKRYVKPDEITVSI 498
           +  A  L   + E+                  +    +  +LL KM +  V PD+ T +I
Sbjct: 211 VSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNI 270

Query: 499 LEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           L + L K+    E   +L     R ++   +T
Sbjct: 271 LIDALCKEGRILEAQGVLAMMSKRGEKPDIVT 302


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 134/424 (31%), Positives = 210/424 (49%), Gaps = 40/424 (9%)

Query: 62  KSGEVE---LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGL 118
           +SG  E   L DA+  F+ M+  +P P +  FN L+GA+   +     I L +++    +
Sbjct: 53  RSGSYEIKGLEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQI 112

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
             D  S  IL+ CFC    +  A    G++ +    PDVVT   L+ GLC+  + +EA  
Sbjct: 113 RCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALD 172

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           LF +     CRP+V+     + ++++GLC++G V +   L   M   G+ PD   Y + +
Sbjct: 173 LFHQI----CRPDVLT----FTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFV 224

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH--PDVLSYCSIINSLCKDVLVD 296
              C         G+T +AL L  +          I H  P+V+ Y +II+ LCKD    
Sbjct: 225 DGMC-------KMGDTVSALNLLRKMEE-------ISHIKPNVVIYSAIIDGLCKDGRHS 270

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            +  LF++M+ +GI P++V Y+ +I G+C+ GR   A++L   +      P+  +YN LI
Sbjct: 271 DSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALI 330

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD----NSCI--------LEAAE-LFRTLHNTKFE 403
           N++ K  K  EA  LY EM+  G+ P+    NS I        L+AAE +F  +      
Sbjct: 331 NAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCS 390

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D+  F  L+DG C + R+    EL  ++PR G   N VTY  +I G C+ G +  A DL
Sbjct: 391 PDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDL 450

Query: 464 LPDM 467
              M
Sbjct: 451 SQQM 454



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 115/422 (27%), Positives = 187/422 (44%), Gaps = 98/422 (23%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ P+ V+ N ++  FC     S A   L  +L +  SP+VVT   LI     +GKF EA
Sbjct: 283 GIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEA 342

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
           + L+ + +       +IPN I Y S+IDG CK   ++    +F  M  +G  PD F + +
Sbjct: 343 AELYDEMLP----RGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTT 398

Query: 237 LIRVYCCAVNWEDAK----------------------------GNTSAALELHEEFVNG- 267
           LI  YC A   +D                              G+ +AAL+L ++ ++  
Sbjct: 399 LIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSG 458

Query: 268 -----------------NGEL------------------------GVICHPDVLSYCSII 286
                            NG+L                        GV   PDVL+Y  +I
Sbjct: 459 VCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGV--EPDVLTYNILI 516

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
             L  +    +A+EL+ +M  RGI+PD + YSS+IDG C   R+D+A ++FVS+ S+   
Sbjct: 517 CGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFS 576

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406
           P+  ++NTLIN Y K  +V++ L L+ EM   G+  D                       
Sbjct: 577 PNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADA---------------------- 614

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
            ++  L+ G  K   +  A ++F+++   G  P+ +T   M+ G   +  +E+A  +L D
Sbjct: 615 IIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLED 674

Query: 467 ME 468
           ++
Sbjct: 675 LQ 676



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 142/286 (49%), Gaps = 28/286 (9%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           + T G  PD  +   L++ +C    + D    L  + R+    + VT   LI G C+ G 
Sbjct: 384 MATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGD 443

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG-------- 224
              A  L  + ++      V P+++   +++DGLC +G +     +F  M+         
Sbjct: 444 LNAALDLSQQMIS----SGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDAS 499

Query: 225 ---RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
               G+ PD   YN LI   C  +N    +G    A EL+EE  +     G++  PD ++
Sbjct: 500 HPFNGVEPDVLTYNILI---CGLIN----EGKFLEAEELYEEMPH----RGIV--PDTIT 546

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y S+I+ LCK   +D+A ++F+ M S+   P+VV +++LI+GYC  GR+DD  +LF  + 
Sbjct: 547 YSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMG 606

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
             G + D   Y TLI  + K+  +  AL ++ EMIS GV PD   I
Sbjct: 607 RRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITI 652



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 116/250 (46%), Gaps = 36/250 (14%)

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           D+ S+  +I   C    +  A   F  +   G+ PDVV +++L+ G CL  R+ +A  LF
Sbjct: 115 DIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLF 174

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN------------- 384
             I    C PD  ++ TL+N   +  +V EA++L   M+  G++PD              
Sbjct: 175 HQI----CRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKM 230

Query: 385 SCILEAAELFRTLHN-TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
              + A  L R +   +  + ++ +++ ++DGLCK  R   +  LF ++   G  PN+VT
Sbjct: 231 GDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVT 290

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEK----------------IREC--LKAIELLHKMA 485
           Y  MI G CI G    A  LL +M E+                ++E    +A EL  +M 
Sbjct: 291 YNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEML 350

Query: 486 KRYVKPDEIT 495
            R + P+ IT
Sbjct: 351 PRGIIPNTIT 360


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 134/424 (31%), Positives = 210/424 (49%), Gaps = 40/424 (9%)

Query: 62  KSGEVE---LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGL 118
           +SG  E   L DA+  F+ M+  +P P +  FN L+GA+   +     I L +++    +
Sbjct: 53  RSGSYEIKGLEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQI 112

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
             D  S  IL+ CFC    +  A    G++ +    PDVVT   L+ GLC+  + +EA  
Sbjct: 113 RCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALD 172

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           LF +     CRP+V+     + ++++GLC++G V +   L   M   G+ PD   Y + +
Sbjct: 173 LFHQI----CRPDVLT----FTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFV 224

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH--PDVLSYCSIINSLCKDVLVD 296
              C         G+T +AL L  +          I H  P+V+ Y +II+ LCKD    
Sbjct: 225 DGMC-------KMGDTVSALNLLRKMEE-------ISHIKPNVVIYSAIIDGLCKDGRHS 270

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            +  LF++M+ +GI P++V Y+ +I G+C+ GR   A++L   +      P+  +YN LI
Sbjct: 271 DSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALI 330

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD----NSCI--------LEAAE-LFRTLHNTKFE 403
           N++ K  K  EA  LY EM+  G+ P+    NS I        L+AAE +F  +      
Sbjct: 331 NAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCS 390

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D+  F  L+DG C + R+    EL  ++PR G   N VTY  +I G C+ G +  A DL
Sbjct: 391 PDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDL 450

Query: 464 LPDM 467
              M
Sbjct: 451 SQQM 454



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 115/425 (27%), Positives = 188/425 (44%), Gaps = 98/425 (23%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ P+ V+ N ++  FC     S A   L  +L +  SP+VVT   LI     +GKF EA
Sbjct: 283 GIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEA 342

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
           + L+ + +       +IPN I Y S+IDG CK   ++    +F  M  +G  PD F + +
Sbjct: 343 AELYDEMLP----RGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTT 398

Query: 237 LIRVYCCAVNWEDAK----------------------------GNTSAALELHEEFVNG- 267
           LI  YC A   +D                              G+ +AAL+L ++ ++  
Sbjct: 399 LIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSG 458

Query: 268 -----------------NGEL------------------------GVICHPDVLSYCSII 286
                            NG+L                        GV   PDVL+Y  +I
Sbjct: 459 VCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGV--EPDVLTYNILI 516

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
             L  +    +A+EL+ +M  RGI+PD + YSS+IDG C   R+D+A ++FVS+ S+   
Sbjct: 517 CGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFS 576

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406
           P+  ++NTLIN Y K  +V++ L L+ EM   G+  D                       
Sbjct: 577 PNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADA---------------------- 614

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
            ++  L+ G  K   +  A ++F+++   G  P+ +T   M+ G   +  +E+A  +L D
Sbjct: 615 IIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLED 674

Query: 467 MEEKI 471
           ++  +
Sbjct: 675 LQMSV 679



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 142/286 (49%), Gaps = 28/286 (9%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           + T G  PD  +   L++ +C    + D    L  + R+    + VT   LI G C+ G 
Sbjct: 384 MATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGD 443

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG-------- 224
              A  L  + ++      V P+++   +++DGLC +G +     +F  M+         
Sbjct: 444 LNAALDLSQQMIS----SGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDAS 499

Query: 225 ---RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
               G+ PD   YN LI   C  +N    +G    A EL+EE  +     G++  PD ++
Sbjct: 500 HPFNGVEPDVLTYNILI---CGLIN----EGKFLEAEELYEEMPH----RGIV--PDTIT 546

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y S+I+ LCK   +D+A ++F+ M S+   P+VV +++LI+GYC  GR+DD  +LF  + 
Sbjct: 547 YSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMG 606

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
             G + D   Y TLI  + K+  +  AL ++ EMIS GV PD   I
Sbjct: 607 RRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITI 652



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 116/250 (46%), Gaps = 36/250 (14%)

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           D+ S+  +I   C    +  A   F  +   G+ PDVV +++L+ G CL  R+ +A  LF
Sbjct: 115 DIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLF 174

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC----------- 386
             I    C PD  ++ TL+N   +  +V EA++L   M+  G++PD              
Sbjct: 175 HQI----CRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKM 230

Query: 387 --ILEAAELFRTLHN-TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
              + A  L R +   +  + ++ +++ ++DGLCK  R   +  LF ++   G  PN+VT
Sbjct: 231 GDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVT 290

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEK----------------IREC--LKAIELLHKMA 485
           Y  MI G CI G    A  LL +M E+                ++E    +A EL  +M 
Sbjct: 291 YNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEML 350

Query: 486 KRYVKPDEIT 495
            R + P+ IT
Sbjct: 351 PRGIIPNTIT 360


>gi|356529509|ref|XP_003533333.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12300, mitochondrial-like [Glycine max]
          Length = 450

 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 126/402 (31%), Positives = 200/402 (49%), Gaps = 41/402 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++DA+  FN M+ M+ TP +  FN +L + A  K+Y   + LS RL   G+ PDF +LNI
Sbjct: 51  VDDAVSQFNSMLCMRHTPPVIQFNKILDSFAXMKHYSTAVSLSHRLELKGIQPDFFTLNI 110

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           LMNCFC M  ++  F  L +IL++ + P  +T   LI+GLC++G+  +A     K +A  
Sbjct: 111 LMNCFCHMGQINFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLA-- 168

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               +  + + Y ++I+G+CK G       L   + GR   P+  +YN++I   C     
Sbjct: 169 --QGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLV 226

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
            +A G  S   E+  + ++ N          V+SY  +I   CK  +VD+A  LF +M  
Sbjct: 227 SEAYGLFS---EMTAKGISAN----------VVSYNIMIKGFCKSKMVDEALNLFKEMHQ 273

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           + ++P +V Y SL+DG C  GRI    +L   +   G   D  +YN+LI+   K   ++ 
Sbjct: 274 KNMVPTIVTYGSLMDGLCKSGRISYVWELIDEMHDRGIPADVITYNSLIDGLCKNGHLDR 333

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           A++L+ +M                             D   F  L+DGLCK  RL+ A E
Sbjct: 334 AIALFNKM------------------------KDXRFDRLTFTILLDGLCKGGRLKDAQE 369

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           +F+ L     + +V  Y VMI G C +G +E+A  +   ME+
Sbjct: 370 VFQDLLTKEYDLDVYPYNVMINGYCKQGLLEEALTMRSKMED 411



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 151/314 (48%), Gaps = 19/314 (6%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++N AL F + ++         S+ +L+  +         I L  +++     P+    N
Sbjct: 155 QVNKALHFHDKLLAQGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYN 214

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            +++  CK   VS+A+     +  K  S +VV+   +I+G C      EA  LF +    
Sbjct: 215 TIIDALCKYQLVSEAYGLFSEMTAKGISANVVSYNIMIKGFCKSKMVDEALNLFKEM--- 271

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             + N++P ++ Y S++DGLCK G ++ V  L  +M  RGI  D   YNSLI   C    
Sbjct: 272 -HQKNMVPTIVTYGSLMDGLCKSGRISYVWELIDEMHDRGIPADVITYNSLIDGLC---- 326

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G+   A+ L  +  +           D L++  +++ LCK   +  A+E+F D+ 
Sbjct: 327 ---KNGHLDRAIALFNKMKDXRF--------DRLTFTILLDGLCKGGRLKDAQEVFQDLL 375

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           ++    DV  Y+ +I+GYC  G +++A  +   +E  GCIP   ++  +IN+  + ++ +
Sbjct: 376 TKEYDLDVYPYNVMINGYCKQGLLEEALTMRSKMEDNGCIPSAVTFEIIINALFEKDEND 435

Query: 367 EALSLYGEMISMGV 380
           +A  L  EMI+ G+
Sbjct: 436 KAEKLLHEMIARGL 449


>gi|356529360|ref|XP_003533262.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  201 bits (512), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 145/519 (27%), Positives = 241/519 (46%), Gaps = 98/519 (18%)

Query: 34  NEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSL 93
           + P S     +S    +T LL  +     +  V   D   FF+ M+ + P P +  FN L
Sbjct: 24  SHPFSTSPPPISDAAHRTLLLNSIRTLETADAVVAVD---FFHRMLTLTPFPCIQDFNLL 80

Query: 94  LGALAGKKYYVNFICLSERLNTIG-LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKV 152
            G +A  ++Y   I L + L+++G    D  +LNI +NC C M   +  F  LG + +  
Sbjct: 81  FGLVAKSQHYATAISLIKILHSLGDGSADVCTLNIAINCLCHMRKTTLGFAVLGLMTKIG 140

Query: 153 FSPDVVTLGCLIRGLCMQGKFTEASGLFTKF--VAFDC---------------------- 188
             P +VTL  ++ GLC++G    A  L  K   + + C                      
Sbjct: 141 LEPTLVTLNTIVNGLCIEGDVNHALWLVEKMENLGYHCNARTYGALVNGLCKIGDTSGAL 200

Query: 189 -------RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
                  + N+ PNV+ Y +I+DGLCK G V +   L  +M    + P+   YN LI+  
Sbjct: 201 ECLKKMVKRNLGPNVVVYNAILDGLCKRGLVGEALGLLHEMGVVNVEPNVVTYNCLIQGL 260

Query: 242 CCAV-NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
           C     W +  G       L  E V    E G++  PDV ++  +++  CK+ L+ +A+ 
Sbjct: 261 CGEFGGWREGVG-------LFNEMV---AEKGIV--PDVQTFSILVDGFCKEGLLLRAES 308

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF--VSIESEGCIPDTSSYNTLINS 358
           +   M   G+ P+VV Y+SLI GYCL  ++++A ++F  +  E EGC+P   ++N+LI+ 
Sbjct: 309 VVGFMVRIGVEPNVVTYNSLIAGYCLRSQMEEAMRVFGLMVREGEGCLPSVVTHNSLIHG 368

Query: 359 YSKIEKVEEALSLYGEMISMGVRPD----------------------------------- 383
           + K+++V++A+SL  EM+  G+ PD                                   
Sbjct: 369 WCKVKEVDKAMSLLSEMVGKGLDPDVFTWTSLIGGFCEVKKPLAARELFFTMKEHGQVPN 428

Query: 384 -NSCIL------------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
             +C +            EA  LFR +  +  +LD+ ++N ++DG+CK  +L  A +L  
Sbjct: 429 LQTCAVVLDGLLKCWLDSEAVTLFRAMMKSGLDLDIVIYNIMLDGMCKMGKLNDARKLLS 488

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
            +   G + +  TY +MI GLC EG ++ A +LL  M+E
Sbjct: 489 CVLVKGLKIDSYTYNIMIKGLCREGLLDDAEELLRKMKE 527



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 156/321 (48%), Gaps = 18/321 (5%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGK--KYYVNFICLSERLNTIGLLPDFVSL 125
           + +AL   + M  +   P + ++N L+  L G+   +       +E +   G++PD  + 
Sbjct: 231 VGEALGLLHEMGVVNVEPNVVTYNCLIQGLCGEFGGWREGVGLFNEMVAEKGIVPDVQTF 290

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           +IL++ FCK   +  A   +G ++R    P+VVT   LI G C++ +  EA  +F   V 
Sbjct: 291 SILVDGFCKEGLLLRAESVVGFMVRIGVEPNVVTYNSLIAGYCLRSQMEEAMRVFGLMVR 350

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
                  +P+V+ + S+I G CK   V+K   L  +M G+G+ PD F + SLI  +C   
Sbjct: 351 EG--EGCLPSVVTHNSLIHGWCKVKEVDKAMSLLSEMVGKGLDPDVFTWTSLIGGFC--- 405

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
                       L   E F     E G +  P++ +   +++ L K  L  +A  LF  M
Sbjct: 406 -------EVKKPLAARELFFTMK-EHGQV--PNLQTCAVVLDGLLKCWLDSEAVTLFRAM 455

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
              G+  D+V+Y+ ++DG C MG+++DARKL   +  +G   D+ +YN +I    +   +
Sbjct: 456 MKSGLDLDIVIYNIMLDGMCKMGKLNDARKLLSCVLVKGLKIDSYTYNIMIKGLCREGLL 515

Query: 366 EEALSLYGEMISMGVRPDNSC 386
           ++A  L  +M   G  P N C
Sbjct: 516 DDAEELLRKMKENGC-PPNKC 535



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 87/219 (39%), Gaps = 34/219 (15%)

Query: 346 IPDTSSYNTLINSYSKIEKVEE--ALSLYGEMISM-------------GVRPDNSCILEA 390
           I D +    L+NS   +E  +   A+  +  M+++             G+   +     A
Sbjct: 34  ISDAAHRTLLLNSIRTLETADAVVAVDFFHRMLTLTPFPCIQDFNLLFGLVAKSQHYATA 93

Query: 391 AELFRTLHN-TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
             L + LH+      D+   N  ++ LC   +    + +   + + G EP +VT   ++ 
Sbjct: 94  ISLIKILHSLGDGSADVCTLNIAINCLCHMRKTTLGFAVLGLMTKIGLEPTLVTLNTIVN 153

Query: 450 GLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKP 491
           GLCIEG +  A  L+  ME                   KI +   A+E L KM KR + P
Sbjct: 154 GLCIEGDVNHALWLVEKMENLGYHCNARTYGALVNGLCKIGDTSGALECLKKMVKRNLGP 213

Query: 492 DEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           + +  + + + L K     E + LL      N E + +T
Sbjct: 214 NVVVYNAILDGLCKRGLVGEALGLLHEMGVVNVEPNVVT 252


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 120/365 (32%), Positives = 190/365 (52%), Gaps = 30/365 (8%)

Query: 116 IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
           +GL P  V+ N L++  C    + DA      +++    PDV+T   +I GLC  G  T 
Sbjct: 4   LGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTM 63

Query: 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
           A  L  K     C+PNV+     Y +IID LCKD  V +    F +M   GI PD F Y+
Sbjct: 64  ALQLLKKMEEKGCKPNVV----AYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYS 119

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           S++  +C         G  + A  L ++ V  N    VI  P+ +++  +I+ LCK  ++
Sbjct: 120 SILHGFC-------NLGRVNEATSLFKQMVERN----VI--PNKVTFTILIDGLCKKRMI 166

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
            +A  +F  M  +G+ PDV  Y++L+DGYC   ++D+A+KLF  ++ +GC P+  SYN L
Sbjct: 167 SEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNIL 226

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPD---NSCIL----------EAAELFRTLHNTKF 402
           IN + K  +++EA  L  EM    + PD    S ++          EA EL + + +   
Sbjct: 227 INGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGL 286

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
             +L  ++ ++DGLCK   L  A+EL K +     EPN+  YT++I G+C  G +E A +
Sbjct: 287 LPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARE 346

Query: 463 LLPDM 467
           L  ++
Sbjct: 347 LFSNL 351



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 161/319 (50%), Gaps = 18/319 (5%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           + +A+ FF+ M+     P + +++S+L              L +++    ++P+ V+  I
Sbjct: 96  VTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTI 155

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++  CK   +S+A++    +  K   PDV T   L+ G C + +  EA  LF      D
Sbjct: 156 LIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFN---IMD 212

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            R    PNV  Y  +I+G CK G +++ + L  +M  + + PD F Y++L+R +C     
Sbjct: 213 -RKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQV--- 268

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               G    A EL +E  +     G++  P++++Y  +++ LCK   +D+A EL   M+ 
Sbjct: 269 ----GRPQEAQELLKEMCS----YGLL--PNLITYSIVLDGLCKHGHLDEAFELLKAMQE 318

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
             I P++ +Y+ LI+G C  G+++ AR+LF ++  +G  P   +Y  +I+   K     E
Sbjct: 319 SKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNE 378

Query: 368 ALSLYGEMISMGVRPDNSC 386
           A  L+ EM   G  P NSC
Sbjct: 379 ACELFREMAVNGCLP-NSC 396



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 17/111 (15%)

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
           L  FN L+ GLC   ++  A +LF ++ + G EP+V+TY+ +I GLC             
Sbjct: 10  LVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLC------------- 56

Query: 466 DMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
               K+     A++LL KM ++  KP+ +  + + + L KD    E M+  
Sbjct: 57  ----KMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFF 103


>gi|297848938|ref|XP_002892350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338192|gb|EFH68609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 493

 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 137/465 (29%), Positives = 217/465 (46%), Gaps = 58/465 (12%)

Query: 59  ENSKSG--EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           E  +SG   ++ NDAL  F  M   +P P +  F+ LL A+A  K Y   I L   +  +
Sbjct: 43  ERLRSGLHSIKFNDALTLFCDMAESRPLPSIVDFSRLLVAIAKLKKYEAVISLFRHIEIL 102

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+  D  S + L++CFC+   +S A   LG++++  F P +VT G L+ G C   +  EA
Sbjct: 103 GISHDLYSFSTLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEA 162

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L  + V         PNV+ Y +IID LC++  V+    +   M+  GI PD   YNS
Sbjct: 163 MSLVDQIVGLGYE----PNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNS 218

Query: 237 LIRVYCCAVNWEDAKGNTSAALEL--HEEFVNGNGELGVI-------------------- 274
           LI     +  W  +    S  + +  H + +  +  + V                     
Sbjct: 219 LITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRS 278

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
             P++++Y S+IN LC   L+D+AK++   M S+G  P+ V Y++L++GYC   R+DDA 
Sbjct: 279 VDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAM 338

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----------- 383
           K+   +  +G   DT +YNTL   Y +  +   A  +   M+S GV PD           
Sbjct: 339 KILCVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGL 398

Query: 384 --NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
             +  I +A      L  ++  + +  +N ++ G+CK+ ++  AW LF  L   G  P+V
Sbjct: 399 CEHGKIEKALVKLEDLQKSETVVGIITYNIIIKGMCKANKVEDAWYLFCSLALKGVSPDV 458

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAK 486
           +TYT M+ GL                  + R  L+A EL  KM K
Sbjct: 459 ITYTTMMIGL-----------------RRKRLWLEAHELYRKMKK 486



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 126/305 (41%), Gaps = 64/305 (20%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGAL-AGKKYYVNFICLSERLNTIGLLPDFVSL 125
           +++ AL   N+M  M   P + ++NSL+  L    K+ V+   LS+ +  +G+ PD ++ 
Sbjct: 193 QVDTALDVLNHMEKMGIRPDVITYNSLITRLFHSGKWGVSARILSDMMR-MGIHPDVITF 251

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           + +++ F K   + +A      ++++   P++VT   LI GLC+ G   EA     K + 
Sbjct: 252 SAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSLINGLCIHGLLDEAK----KVLN 307

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
           F       PN + Y ++++G CK   V+    +   M   G+  D F YN+L + YC A 
Sbjct: 308 FMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDGVDGDTFTYNTLYQGYCQAG 367

Query: 246 NWEDAK----------------------------GNTSAALELHEEFVNGNGELGVICH- 276
            +  A+                            G    AL   E+       +G+I + 
Sbjct: 368 QFNAAEKVLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKALVKLEDLQKSETVVGIITYN 427

Query: 277 ----------------------------PDVLSYCSIINSLCKDVLVDKAKELFLDM-KS 307
                                       PDV++Y +++  L +  L  +A EL+  M K 
Sbjct: 428 IIIKGMCKANKVEDAWYLFCSLALKGVSPDVITYTTMMIGLRRKRLWLEAHELYRKMKKD 487

Query: 308 RGIIP 312
            G++P
Sbjct: 488 DGLMP 492



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 106/253 (41%), Gaps = 40/253 (15%)

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           + A  LF DM     +P +V +S L+     + + +    LF  IE  G   D  S++TL
Sbjct: 55  NDALTLFCDMAESRPLPSIVDFSRLLVAIAKLKKYEAVISLFRHIEILGISHDLYSFSTL 114

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDG 415
           I+ + +  ++  ALS  G+M+ +G                      FE  +  F  LV+G
Sbjct: 115 IDCFCRCSRLSLALSCLGKMMKLG----------------------FEPSIVTFGSLVNG 152

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE-KIR-- 472
            C   R++ A  L  ++   G EPNVV Y  +I  LC    ++ A D+L  ME+  IR  
Sbjct: 153 FCHVNRIQEAMSLVDQIVGLGYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPD 212

Query: 473 ---------------ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLP 517
                          +   +  +L  M +  + PD IT S + ++  K+    E      
Sbjct: 213 VITYNSLITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYD 272

Query: 518 SFLSRNQEESKLT 530
             + R+ + + +T
Sbjct: 273 EMIQRSVDPNIVT 285


>gi|356497996|ref|XP_003517841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 600

 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 164/595 (27%), Positives = 273/595 (45%), Gaps = 122/595 (20%)

Query: 31  NSENEPSSLH-SNSVSTV----EEKTKLLKYLS--ENSKSGEVELNDALCFFNYMIHMQP 83
           +S ++P  LH S+S ST     +  T   ++L    N+KS +V L+    F++ M+ M+P
Sbjct: 24  SSNSKPFLLHPSHSSSTFSFVSDSDTSRAQFLDSMRNAKSVDVALD----FYHKMVTMKP 79

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
            P +  FN L   +A  K+Y   I L + ++ IG+ P   +LNI++NC C++      F 
Sbjct: 80  FPCVKDFNLLFSIVAKMKHYTTAISLIKHMSYIGVKPTVHTLNIVINCLCRLSHAVFGFS 139

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV-----------AFDC---- 188
            LG + +    P +VT   ++ GLC++G   +A     +FV           ++ C    
Sbjct: 140 VLGLMFKIGVEPSIVTFNTIVNGLCVEGNVAQA----IRFVDHLKDMGYESDSYTCGAIT 195

Query: 189 --------------------RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
                                 N   +V  Y+ ++DGLCKDG V +   LF  M G+GI 
Sbjct: 196 NGLCKVGHSSAALSYLKKMEEKNCNLDVTAYSGVVDGLCKDGMVFEALNLFSQMTGKGIQ 255

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           PD F YN LI   C    W++A    +  +             G++  PDV ++  I   
Sbjct: 256 PDLFTYNCLIHGLCNFDRWKEAAPLLANMMRK-----------GIM--PDVQTFNVIAGR 302

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
             K  ++ +AK +F  M   GI  DVV Y+S+I  +C++ ++ DA ++F  + S+GC+P+
Sbjct: 303 FFKTGMISRAKSIFSFMVHMGIEHDVVTYTSIIGAHCMLNQMKDAMEVFDLMISKGCLPN 362

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------------------- 383
             +Y +LI+ + + + + +A+   GEM++ G+ P+                         
Sbjct: 363 IVTYTSLIHGWCETKNMNKAMYFLGEMVNNGLDPNVVTWSTLIGGVCKAGKPVAAKELFL 422

Query: 384 -----------NSCIL------------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
                       +C +            EA  LFR L    ++L++ ++N ++DG+C S 
Sbjct: 423 VMHKHGQLPNLQTCAIILDGLFKCNFHSEAMSLFRELEKMNWDLNIIIYNIILDGMCSSG 482

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK---IRECLKA 477
           +L  A ELF  L   G + +VVTY +MI GLC EG ++ A DLL  MEE      EC   
Sbjct: 483 KLNDALELFSYLSSKGVKIDVVTYNIMIKGLCKEGLLDDAEDLLMKMEENGCPPNECTYN 542

Query: 478 IELLHKMAKRYVKPDEITVSILEELLNKDENCHE---CMNLLPSFLSRNQEESKL 529
           +  +  + +RY    +I+ S    +  KD+           L ++ S N+E   L
Sbjct: 543 V-FVQGLLRRY----QISKSTKYLMFMKDKGFQADATTTKFLINYFSANKENRAL 592



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 145/305 (47%), Gaps = 18/305 (5%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A   F++M+HM     + ++ S++GA        + + + + + + G LP+ V+   
Sbjct: 309 ISRAKSIFSFMVHMGIEHDVVTYTSIIGAHCMLNQMKDAMEVFDLMISKGCLPNIVTYTS 368

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++ +C+   ++ A   LG ++     P+VVT   LI G+C  GK   A  LF       
Sbjct: 369 LIHGWCETKNMNKAMYFLGEMVNNGLDPNVVTWSTLIGGVCKAGKPVAAKELFLVMH--- 425

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            +   +PN+   A I+DGL K  F ++   LF +++      +  +YN ++   C     
Sbjct: 426 -KHGQLPNLQTCAIILDGLFKCNFHSEAMSLFRELEKMNWDLNIIIYNIILDGMC----- 479

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
             + G  + ALEL     +   ++      DV++Y  +I  LCK+ L+D A++L + M+ 
Sbjct: 480 --SSGKLNDALELFSYLSSKGVKI------DVVTYNIMIKGLCKEGLLDDAEDLLMKMEE 531

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            G  P+   Y+  + G     +I  + K  + ++ +G   D ++   LIN +S   K   
Sbjct: 532 NGCPPNECTYNVFVQGLLRRYQISKSTKYLMFMKDKGFQADATTTKFLINYFSA-NKENR 590

Query: 368 ALSLY 372
           AL ++
Sbjct: 591 ALEVF 595


>gi|22128587|gb|AAM52339.1| fertility restorer [Petunia x hybrida]
          Length = 592

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 143/547 (26%), Positives = 254/547 (46%), Gaps = 96/547 (17%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+DA   F  M+  +P P   SF+ LL AL   K+Y + + +   ++ + +  D  +L+ 
Sbjct: 53  LDDAFSLFRQMVTTKPLPSAVSFSKLLKALVHMKHYSSVVSIFREIHKLRIPVDAFALST 112

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++N  C M      F  L    +K    + VT   LIRGL  + K  +A  LF K V   
Sbjct: 113 VVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLV--- 169

Query: 188 CRPNVI-PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC---- 242
            R N+  P+ + Y +++DGLCK G   K   L   M+     PD  +YN +I  +C    
Sbjct: 170 -RENICEPDEVMYGTVMDGLCKKGHTQKAFDLLRLMEQGITKPDTCIYNIVIDAFCKDGM 228

Query: 243 ----CAVNWEDAKGNTSAALELHEEFVNGNGELG--------------VICHPDVLSYCS 284
                ++  E  + N    +  +   ++G G+L               +  +PDV ++ S
Sbjct: 229 LDGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTFNS 288

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           +I+ LCK+  V+ A+E+   M  +G+ P+ + Y+ ++DGYCL G++  AR++F S+  +G
Sbjct: 289 VIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSMIDKG 348

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------------------- 383
             PD  SY  LIN Y + +K+++A+ L+ E+   G++P                      
Sbjct: 349 IEPDIISYTALINGYVEKKKMDKAMQLFREISQNGLKPSIVTCSVLLRGLFEVGRTECAK 408

Query: 384 ---------------------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
                                      N  + EA   F  L   + + ++ ++  +++GL
Sbjct: 409 IFFDEMQAAGHIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVINGL 468

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK------ 470
           CK+ +L  A   F+KLP  G  P+V+TYT MI G C EG +++A D+L  ME+       
Sbjct: 469 CKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLPDN 528

Query: 471 ------IRECLKAIEL------LHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPS 518
                 +R   ++ ++      L ++A +    +  TV +L +++ +D +    +N++P 
Sbjct: 529 RTYNVIVRGFFRSSKVSEMKAFLKEIAGKSFSFEAATVELLMDIIAEDPS---LLNMIPE 585

Query: 519 FLSRNQE 525
           F   N++
Sbjct: 586 FHRDNKK 592


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 131/485 (27%), Positives = 228/485 (47%), Gaps = 93/485 (19%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALA-----------GKKY----------- 102
           +++L+DA+  F  M+  +P P +  F+ LL A+A           G++            
Sbjct: 53  DLKLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYT 112

Query: 103 ---YVNFICLSERLN----------TIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149
              ++N+ C   +L+           +G  P  V+LN L+N FC    +S+A   + +++
Sbjct: 113 YSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMV 172

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI---------------- 193
              + PD VT   L+ GL    K +EA  L  + V   C+P+++                
Sbjct: 173 EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPD 232

Query: 194 ---------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
                           +V+ Y +IIDGLCK   ++    LF  M+ +GI PD F YN LI
Sbjct: 233 LALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLI 292

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
              C    W DA    S  LE +              +PD++ + ++I++  K+  + +A
Sbjct: 293 SCLCNYGRWSDASRLLSDMLEKN-------------INPDLVFFNALIDAFVKEGKLVEA 339

Query: 299 KELFLDM-KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           ++L+ +M KS+   PDVV Y++LI G+C   R+++  ++F  +   G + +T +Y TLI+
Sbjct: 340 EKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIH 399

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFEL 404
            + +    + A  ++ +M+S GV PD             N  +  A  +F  +     +L
Sbjct: 400 GFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKL 459

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           D+  +  +++ LCK+ ++   W+LF  L   G +PNVVTYT M+ G C +G  E+A  L 
Sbjct: 460 DIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALF 519

Query: 465 PDMEE 469
            +M+E
Sbjct: 520 VEMKE 524



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 170/348 (48%), Gaps = 31/348 (8%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K GE +L  AL   N M   +    +  +N+++  L   K+  +   L  ++ T G+ PD
Sbjct: 227 KRGEPDL--ALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPD 284

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             + N L++C C     SDA   L  +L K  +PD+V    LI     +GK  EA  L+ 
Sbjct: 285 VFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYD 344

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           + V      +  P+V+ Y ++I G CK   V +   +F +M  RG+  +   Y +LI  +
Sbjct: 345 EMVK---SKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGF 401

Query: 242 CCAVNWEDAKGNTSAALE--LHEEFV-----------NGNGELGVICHP---------DV 279
             A + ++A+      +   +H + +           NGN E  ++            D+
Sbjct: 402 FQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDI 461

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           ++Y ++I +LCK   V+   +LF  +  +G+ P+VV Y++++ G+C  G  ++A  LFV 
Sbjct: 462 VTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVE 521

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALS--LYGEMISMGVRPDNS 385
           ++ +G +P++ +YNTLI   +++   +EA S  L  EM S G   D S
Sbjct: 522 MKEDGPLPNSGTYNTLIR--ARLRDGDEAASAELIKEMRSCGFAGDAS 567



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 139/358 (38%), Gaps = 71/358 (19%)

Query: 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
           LC +  F  AS       + DCR N+   V+    + D +           LF DM    
Sbjct: 28  LCWERSFAGAS-------SDDCRENLSRKVLQDLKLDDAIG----------LFGDMVKSR 70

Query: 227 IYPDAFVYNSLIRVYCCAVNWEDAKGNT-SAALELHEEFVNGNGELGVICHPDVLSYCSI 285
            +P    ++ L+           AK N     + L E+  N    LG I H ++ +Y   
Sbjct: 71  PFPSIVEFSKLLSAI--------AKMNKFDLVISLGEQMQN----LG-ISH-NLYTYSIF 116

Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
           IN  C+   +  A  +   M   G  P +V  +SL++G+C   RI +A  L   +   G 
Sbjct: 117 INYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGY 176

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELD 405
            PDT ++ TL++   +  K  EA++L   M+  G +PD                      
Sbjct: 177 QPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPD---------------------- 214

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
           L  +  +++GLCK      A  L  K+ +   E +VV Y  +I GLC    ++ A+DL  
Sbjct: 215 LVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFN 274

Query: 466 DMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
            ME K                  +KPD  T + L   L       +   LL   L +N
Sbjct: 275 KMETK-----------------GIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKN 315


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 130/446 (29%), Positives = 216/446 (48%), Gaps = 58/446 (13%)

Query: 67  ELNDALCFFNYMI-HMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
           E N+ +  FN+++ H  PTP    FN +L +L   K++   + L +++   G+  DF + 
Sbjct: 40  EENNLISSFNHLLLHKNPTPPTFQFNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTF 99

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           NIL+NCF ++   S +F    +IL+K + P  +T   LI+GLC++G   +A     K VA
Sbjct: 100 NILINCFSQLGLNSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVA 159

Query: 186 FD---------------CRPNVI----------------PNVICYASIIDGLCKDGFVNK 214
                            C+   I                PN + Y  IID +CK   VN 
Sbjct: 160 QGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVND 219

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
              L+  M  + I PD F YN+LI  +        A    + A++L  +    N      
Sbjct: 220 AFDLYSQMVAKRICPDVFTYNALISGFS-------AVSKLNYAIDLFNKMKKEN------ 266

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
            +P+V ++  +++  CK+  V+ AK +   M    I PDVV Y+SL+DGYC + +++ A+
Sbjct: 267 INPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAK 326

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNS 385
            +F S+ S G I +   Y T++N + KI+ V+EA++L+ EM    + P         D  
Sbjct: 327 DIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGL 386

Query: 386 C----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
           C    I  A +L   +H+     ++  ++ ++D LCK+  +  A  L   L   G  P++
Sbjct: 387 CKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDM 446

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDM 467
            TYT++I GLC  G +E A ++  D+
Sbjct: 447 YTYTILIKGLCQSGRLEDAQNVFEDL 472



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 122/381 (32%), Positives = 188/381 (49%), Gaps = 39/381 (10%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           S+ +L+  L         + L +R++   + P+ V  N++++  CK   V+DAF    ++
Sbjct: 168 SYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQM 227

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
           + K   PDV T   LI G     K   A  LF K      + N+ PNV  +  ++DG CK
Sbjct: 228 VAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMK----KENINPNVYTFNILVDGFCK 283

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           +G VN  +V+   M    I PD   YNSL+  YC       AK       ++ +   +G 
Sbjct: 284 EGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAK-------DIFDSMASG- 335

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
              GVI +  +  Y +++N  CK  +VD+A  LF +M+ R IIP+VV YSSLIDG C +G
Sbjct: 336 ---GVIANVQI--YTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLG 390

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL 388
           RI  A KL   +   G  P+  +Y++++++  K   V++A++L   +   G+RP      
Sbjct: 391 RIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRP------ 444

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
                           D+  +  L+ GLC+S RL  A  +F+ L   G   +V  YTVMI
Sbjct: 445 ----------------DMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMI 488

Query: 449 CGLCIEGGIEKAYDLLPDMEE 469
            G C +G  +KA  LL  ME+
Sbjct: 489 QGFCDKGFFDKALALLSKMED 509



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 98/323 (30%), Positives = 165/323 (51%), Gaps = 23/323 (7%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +NDA   ++ M+  +  P + ++N+L+   +        I L  ++    + P+  + NI
Sbjct: 217 VNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNI 276

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++ FCK   V+DA V L  +++    PDVVT   L+ G C   K  +A  +F    +  
Sbjct: 277 LVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMAS-- 334

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               VI NV  Y ++++G CK   V++   LF +M+ R I P+   Y+SLI   C     
Sbjct: 335 --GGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLC----- 387

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               G    AL+L +E ++  G+      P++++Y SI+++LCK+  VDKA  L  ++K 
Sbjct: 388 --KLGRIFYALKLVDE-MHDRGQ-----PPNIVTYSSILDALCKNHHVDKAIALLTNLKD 439

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           +GI PD+  Y+ LI G C  GR++DA+ +F  +  +G   D  +Y  +I  +      ++
Sbjct: 440 QGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDK 499

Query: 368 ALSLYGEMISMGVRPDNSCILEA 390
           AL+L  +M       DN CI  A
Sbjct: 500 ALALLSKM------EDNGCIPNA 516


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 125/414 (30%), Positives = 213/414 (51%), Gaps = 31/414 (7%)

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
            +++  M   P + ++ +L+ A A  K     + L E +   G  P+ V+ N+L++  CK
Sbjct: 45  MDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCK 104

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
           +  V  A   + +++   F+P+V+T   L+ G C +G   +A  L    VA   RPNV+ 
Sbjct: 105 LSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVT 164

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
               Y+++IDGLCK     + + +  +MK  G+ PDAF Y++LI   C A   E+A    
Sbjct: 165 ----YSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEA---- 216

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
               E     + G+G     C PDV+ Y SII++ CK   + +A++   +M+ +   PDV
Sbjct: 217 ----EQMLRRMAGSG-----CTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDV 267

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEG-CIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           V Y+++IDG C +G+I +A+ +   ++  G  +PD  +Y+T+IN   K + + EA  L  
Sbjct: 268 VTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLD 327

Query: 374 EMISMGVRPD----NSCI--------LEAAE-LFRTLHNTKFELDLTVFNCLVDGLCKSW 420
            M   G  PD     + I        LE AE L + +       ++  +  L+ GLCK+ 
Sbjct: 328 RMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKAR 387

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC 474
           ++  A  + +++   G  PN+VTY  M+ GLC+ G I++A  L+  M++   EC
Sbjct: 388 KVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAEC 441



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 121/426 (28%), Positives = 198/426 (46%), Gaps = 51/426 (11%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L +A+     M      P + ++N L+ AL           + +++   G  P+ ++ N
Sbjct: 72  KLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFN 131

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ FCK   V DA   LG ++ K   P+VVT   LI GLC   KF EA  +  +  A 
Sbjct: 132 SLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKA- 190

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                V P+   Y+++I GLCK   + +   +   M G G  PD  VY+S+I  +C +  
Sbjct: 191 ---SGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGK 247

Query: 247 WEDA--------KGNTSAALELHEEFVNGNGELGVICH---------------PDVLSYC 283
             +A        K   S  +  +   ++G  +LG I                 PDV++Y 
Sbjct: 248 LLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYS 307

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
           ++IN LCK  ++ +A++L   M   G  PDVV Y+++IDG C  GR+++A  L   ++  
Sbjct: 308 TVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRA 367

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFE 403
           GC P+  +Y TLI+   K  KV+EA  +  EM + G  P                     
Sbjct: 368 GCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPP--------------------- 406

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLP--RYGPEPNVVTYTVMICGLCIEGGIEKAY 461
            +L  +N +V+GLC S R++ A +L +++   R    P+  TY  ++  L     +++A 
Sbjct: 407 -NLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAE 465

Query: 462 DLLPDM 467
            LL  M
Sbjct: 466 QLLEQM 471



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 113/404 (27%), Positives = 181/404 (44%), Gaps = 61/404 (15%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L E + + G  PD  +   ++     M    D   A+  +      P+VVT   LI    
Sbjct: 12  LLEEMKSAGFAPDAFTHTPIITA---MANAGDLDGAMDHLRSMGCDPNVVTYTALIAAFA 68

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVI-------------------------------PNVI 197
              K  EA  L  +     C PN++                               PNV+
Sbjct: 69  RAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVM 128

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            + S++DG CK G V+  R L   M  +G+ P+   Y++LI   C +  + +AK      
Sbjct: 129 TFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAK------ 182

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
            E+ EE        GV   PD  +Y ++I+ LCK   +++A+++   M   G  PDVVVY
Sbjct: 183 -EVLEEMKAS----GVT--PDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVY 235

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           SS+I  +C  G++ +A+K    +  +   PD  +YNT+I+   K+ K+ EA  +  +M  
Sbjct: 236 SSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQE 295

Query: 378 MG-VRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLR 423
            G V PD             +  ++EA +L   +       D+  +  ++DGLCK  RL 
Sbjct: 296 SGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLE 355

Query: 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            A  L + + R G  PNVVTYT +I GLC    +++A  ++ +M
Sbjct: 356 EAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEM 399



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 155/360 (43%), Gaps = 83/360 (23%)

Query: 207 CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266
           C  G ++    L  +MK  G  PDAF +  +I     A + + A  +  +          
Sbjct: 1   CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRS---------- 50

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY--------- 317
               +G  C P+V++Y ++I +  +   +++A +L  +M+ RG  P++V Y         
Sbjct: 51  ----MG--CDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCK 104

Query: 318 --------------------------SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
                                     +SL+DG+C  G +DDARKL   + ++G  P+  +
Sbjct: 105 LSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVT 164

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLH 398
           Y+ LI+   K +K  EA  +  EM + GV PD                I EA ++ R + 
Sbjct: 165 YSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMA 224

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
            +    D+ V++ ++   CKS +L  A +  +++ +    P+VVTY  +I GLC  G I 
Sbjct: 225 GSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIA 284

Query: 459 KAYDLLPDMEE-------------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           +A  +L  M+E                   K    ++A +LL +M K    PD +T + +
Sbjct: 285 EAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTI 344


>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
 gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
 gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 121/418 (28%), Positives = 217/418 (51%), Gaps = 30/418 (7%)

Query: 66  VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
           ++ +DA   F  M+  +P P +  F  +L  +A    +   I L  ++  +G+  D  S 
Sbjct: 58  IKFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSF 117

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
            IL++CFC+   +S A   LG++++  F P +VTLG L+ G C   +F EA  L      
Sbjct: 118 TILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDG 177

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
           F      +PNV+ Y ++I+GLCK+  +N    +F  M+ +GI  DA  YN+LI     + 
Sbjct: 178 F----GFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSG 233

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
            W DA         L  + V    +      P+V+ + ++I++  K+  + +A+ L+ +M
Sbjct: 234 RWTDAA-------RLLRDMVKRKID------PNVIFFTALIDTFVKEGNLLEARNLYKEM 280

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
             R ++P+V  Y+SLI+G+C+ G + DA+ +F  + S+GC PD  +YNTLI  + K ++V
Sbjct: 281 IRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRV 340

Query: 366 EEALSLYGEMISMGVRPD----NSCILE---------AAELFRTLHNTKFELDLTVFNCL 412
           E+ + L+ EM   G+  D    N+ I           A ++F  + +     D+  +N L
Sbjct: 341 EDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNIL 400

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           +D LC + ++  A  + + L +   + +++TY ++I GLC    +++A+ L   +  K
Sbjct: 401 LDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRK 458



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 153/341 (44%), Gaps = 26/341 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +LN+AL  F  M          ++N+L+  L+    + +   L   +    + P+ +   
Sbjct: 199 DLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFT 258

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ F K   + +A      ++R+   P+V T   LI G C+ G   +A  +F   V+ 
Sbjct: 259 ALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSK 318

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C     P+V+ Y ++I G CK   V     LF +M  +G+  DAF YN+LI  YC A  
Sbjct: 319 GC----FPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQA-- 372

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                      L + ++  N   + GV   PD+++Y  +++ LC +  ++KA  +  D++
Sbjct: 373 ---------GKLNVAQKVFNRMVDCGV--SPDIVTYNILLDCLCNNGKIEKALVMVEDLQ 421

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
              +  D++ Y+ +I G C   ++ +A  LF S+  +G  PD  +Y T+I+   +     
Sbjct: 422 KSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQR 481

Query: 367 EALSLYGEMISMGVRPDNSCILE---------AAELFRTLH 398
           EA  L   M   G  P      E         +AEL +  H
Sbjct: 482 EADKLCRRMKEDGFMPSERIYDETLRDHYTSLSAELIKAAH 522



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 106/241 (43%), Gaps = 30/241 (12%)

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           D A  LF +M     IP +V ++ ++     M + D    L+  +E+ G   D  S+  L
Sbjct: 61  DDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTIL 120

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRP-------------DNSCILEAAELFRTLHNTKF 402
           I+ + +  ++  AL+L G+M+ +G RP               +   EA  L  ++    F
Sbjct: 121 IHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGF 180

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
             ++ ++N +++GLCK+  L +A E+F  + + G   + VTY  +I GL   G    A  
Sbjct: 181 VPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAAR 240

Query: 463 LLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
           LL D                 M KR + P+ I  + L +   K+ N  E  NL    + R
Sbjct: 241 LLRD-----------------MVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRR 283

Query: 523 N 523
           +
Sbjct: 284 S 284


>gi|356561401|ref|XP_003548970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 129/434 (29%), Positives = 211/434 (48%), Gaps = 66/434 (15%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++D +  FN ++ ++ TP +  F  +LG L   K+Y   I LS ++   G+ P+ V+LNI
Sbjct: 46  VDDTVSQFNRLLLVRHTPPIIEFGKILGYLVKMKHYPTAISLSRQMEVKGIEPNLVTLNI 105

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+NCFC +  ++ +F  LG+IL+  + PD +TL  L++GLC++G+   +     K VA  
Sbjct: 106 LINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQG 165

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
            + N +                               P+V+ Y++IIDGLCKD  VN+  
Sbjct: 166 FQMNQVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAY 225

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
             F +M  RGI+P+   Y++LI  +C A       G    A  L  E +  N       +
Sbjct: 226 DFFSEMNARGIFPNVITYSTLIWGFCLA-------GQLMGAFSLLNEMILKN------IN 272

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+V +Y  +I++LCK+  V +AK+L  +M  +G   DVV Y+S++DG C    +D A  L
Sbjct: 273 PNVYTYNILIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATAL 332

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
           F+ ++  G  P+  +Y  LI+   K  +++ A  L+  ++  G      CI         
Sbjct: 333 FMKMKKWGIQPNKYTYTALIDGLCKGGRLKNAQKLFQHLLVKG-----CCI--------- 378

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
                   D+  +N ++ GLCK      A  +  K+   G  PN VT+ ++I  L  +  
Sbjct: 379 --------DVRTYNVMISGLCKEGMFDKALAMKSKMEDNGCIPNAVTFDIIIRSLFEKDE 430

Query: 457 IEKAYDLLPDMEEK 470
            +KA  LL  M  K
Sbjct: 431 NDKAEKLLHGMIAK 444



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 19/233 (8%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +N  G+ P+ ++ + L+  FC    +  AF  L  ++ K  +P+V T   LI  LC +GK
Sbjct: 231 MNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGK 290

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
             EA  L  + +    +P    +V+ Y S++DGLCK   ++K   LF+ MK  GI P+ +
Sbjct: 291 VKEAKKLLAE-MHHKGQP---ADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNKY 346

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEF-VNGNGELGVICHPDVLSYCSIINSLCK 291
            Y +LI   C         G    A +L +   V G       C  DV +Y  +I+ LCK
Sbjct: 347 TYTALIDGLC-------KGGRLKNAQKLFQHLLVKG-------CCIDVRTYNVMISGLCK 392

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           + + DKA  +   M+  G IP+ V +  +I         D A KL   + ++G
Sbjct: 393 EGMFDKALAMKSKMEDNGCIPNAVTFDIIIRSLFEKDENDKAEKLLHGMIAKG 445



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 84/211 (39%), Gaps = 39/211 (18%)

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           P ++ +  ++     M     A  L   +E +G  P+  + N LIN +  + ++  + S+
Sbjct: 63  PPIIEFGKILGYLVKMKHYPTAISLSRQMEVKGIEPNLVTLNILINCFCHLGQMAFSFSV 122

Query: 372 YGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
            G+++ +G +PD                          N L+ GLC    ++ +     K
Sbjct: 123 LGKILKLGYQPDT----------------------ITLNTLMKGLCLKGEVKRSLHFHDK 160

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKP 491
           +   G + N V+Y  ++ GLC                 KI E   A++LL  +  R  +P
Sbjct: 161 VVAQGFQMNQVSYGTLLNGLC-----------------KIGETRCAVKLLRMIEDRSTRP 203

Query: 492 DEITVSILEELLNKDENCHECMNLLPSFLSR 522
           D +  S + + L KD+  ++  +      +R
Sbjct: 204 DVVMYSTIIDGLCKDKIVNQAYDFFSEMNAR 234



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 6/166 (3%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G+V+  +A      M H      + ++NS+L  L   +       L  ++   G+ P+
Sbjct: 287 KEGKVK--EAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPN 344

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             +   L++  CK   + +A      +L K    DV T   +I GLC +G F +A  + +
Sbjct: 345 KYTYTALIDGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMISGLCKEGMFDKALAMKS 404

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI 227
           K     C    IPN + +  II  L +    +K   L   M  +G+
Sbjct: 405 KMEDNGC----IPNAVTFDIIIRSLFEKDENDKAEKLLHGMIAKGL 446


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 126/401 (31%), Positives = 196/401 (48%), Gaps = 57/401 (14%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  PD  + N+L+N   K   V  A   +  +LR+ F PD+ T   LI GLC  G+  EA
Sbjct: 296 GFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEA 355

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             +  + +  DC PN +     Y +II  LCK+  V +   L L + G+GI PD   YNS
Sbjct: 356 VKVLNQMIERDCSPNTV----TYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNS 411

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI+  C + N        + A+EL++E           CHPD  +Y  +I+SLC    + 
Sbjct: 412 LIQGLCLSRNH-------TVAMELYKEMKTKG------CHPDEFTYNMLIDSLCFRGKLQ 458

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A  L  +M+  G   +V+ Y++LIDG+C   RI +A ++F  +E +G   ++ +YNTLI
Sbjct: 459 EALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLI 518

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           +   K E+VEEA  L  +MI  G+RPD                 KF      +N L+   
Sbjct: 519 DGLCKSERVEEASQLMDQMIMEGLRPD-----------------KF-----TYNSLLTYF 556

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK------ 470
           CK+  ++ A ++ + +   G EP++VTY  +I GLC  G +E A  LL  ++ K      
Sbjct: 557 CKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTP 616

Query: 471 ------------IRECLKAIELLHKMAKRYVKPDEITVSIL 499
                        +   +A+ L  +M ++   PD +T  I+
Sbjct: 617 HAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIV 657



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 123/427 (28%), Positives = 208/427 (48%), Gaps = 40/427 (9%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMP---SFNSLLGALAGKKYYVNFICLSERLNTIGL 118
           K G +E  +AL F   M   +   F P   +FN L+  L+   +  + + + + +   G 
Sbjct: 277 KEGRIE--EALRFIEEMSLREG--FFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGF 332

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
            PD  + N L++  CK+  V +A   L +++ +  SP+ VT   +I  LC + +  EA  
Sbjct: 333 DPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEA-- 390

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
             TK         ++P+V  Y S+I GLC          L+ +MK +G +PD F YN LI
Sbjct: 391 --TKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLI 448

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEF-VNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
              C        +G    AL L +E  V+G       C  +V++Y ++I+  CK+  + +
Sbjct: 449 DSLCF-------RGKLQEALNLLKEMEVSG-------CARNVITYNTLIDGFCKNKRIAE 494

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A+E+F  M+ +G+  + V Y++LIDG C   R+++A +L   +  EG  PD  +YN+L+ 
Sbjct: 495 AEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLT 554

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPD------------NSCILEAA-ELFRTLHNTKFEL 404
            + K   +++A  +   M S G  PD             +  +EAA +L RT+      L
Sbjct: 555 YFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINL 614

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG-IEKAYDL 463
               +N ++  L +  R + A  LF+++      P+ VTY ++  GLC  GG I +A D 
Sbjct: 615 TPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRGLCQGGGPIGEAVDF 674

Query: 464 LPDMEEK 470
           + +M E+
Sbjct: 675 VMEMLER 681



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 103/433 (23%), Positives = 166/433 (38%), Gaps = 102/433 (23%)

Query: 178 GLFTKFVAF----DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233
           GL+ + + F    +    V+ N   Y  +++ L     +  V +   +M  RGI PD   
Sbjct: 138 GLYNEILQFVDAMEVEFGVVANTHFYNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPDVST 197

Query: 234 YNSLIRVYCCAVNWEDA----------------------------KGNTSAALELHEEFV 265
           +N LI+  C A     A                            +GN   A+ + E+ V
Sbjct: 198 FNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMV 257

Query: 266 N---------------GNGELGVI---------------CHPDVLSYCSIINSLCKDVLV 295
                           G  + G I                 PD  ++  ++N L K   V
Sbjct: 258 EAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHV 317

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
             A E+   M   G  PD+  Y+SLI G C +G +D+A K+   +    C P+T +YNT+
Sbjct: 318 KHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTI 377

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDG 415
           I++  K  +VEEA  L   +   G+ P                      D+  +N L+ G
Sbjct: 378 ISTLCKENQVEEATKLALVLTGKGILP----------------------DVCTYNSLIQG 415

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------ 469
           LC S     A EL+K++   G  P+  TY ++I  LC  G +++A +LL +ME       
Sbjct: 416 LCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARN 475

Query: 470 ------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLP 517
                       K +   +A E+  +M  + V  + +T + L + L K E   E   L+ 
Sbjct: 476 VITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMD 535

Query: 518 SFLSRNQEESKLT 530
             +       K T
Sbjct: 536 QMIMEGLRPDKFT 548



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/289 (20%), Positives = 122/289 (42%), Gaps = 20/289 (6%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N+L+      K       + +++   G+  + V+ N L++  CK   V +A   + ++
Sbjct: 478 TYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQM 537

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
           + +   PD  T   L+   C  G   +A+ +     +  C P+++     Y ++I GLCK
Sbjct: 538 IMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIV----TYGTLIAGLCK 593

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
            G V     L   ++ +GI      YN +I+           +  +  A+ L  E +   
Sbjct: 594 AGRVEAATKLLRTIQMKGINLTPHAYNPVIQALF-------RRKRSKEAVRLFREMIEKA 646

Query: 269 GELGVICHPDVLSYCSIINSLCKDV-LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
                   PD ++Y  +   LC+    + +A +  ++M  RG +P+   +  L +G   +
Sbjct: 647 EA------PDAVTYKIVFRGLCQGGGPIGEAVDFVMEMLERGYVPEFSSFYMLAEGLFSL 700

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
             +    KL   +  +    D     T+I  + KI K ++AL+  G ++
Sbjct: 701 AMVGTLIKLIDMVMEKAKFSDNEV--TMIRGFLKISKYQDALATLGGIL 747


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 139/452 (30%), Positives = 224/452 (49%), Gaps = 56/452 (12%)

Query: 81  MQPTPFMP---SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           M+   F P   ++N+LL  L       +   L ER+   G  PD V+ N L++ FCK+  
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           + +A       +++ F PDVVT   LI G C   K  EA  +  + V+     N++P+V+
Sbjct: 61  LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVS----ENLVPDVV 116

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            Y S+++GLCK+G V++ R+L +D   +G  P+   Y++LI   C      + +G  S A
Sbjct: 117 TYNSLVNGLCKNGRVDEARMLIVD---KGFSPNVITYSTLISGLC-----RELRG-VSEA 167

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
           L+L    +    E      P+V +Y  +I+ L K+  V++A ELF  +   G+ PD + Y
Sbjct: 168 LKLFGSVLKQGYE------PEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITY 221

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           +  IDG C  GR++DA  +   ++ +GC+PD  S+N +IN   K ++V+EA  L   M +
Sbjct: 222 TVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEA 281

Query: 378 MGVRPD----NSCIL---------EAAELFRTLHNTKFELDLTVFNCLVDGLCKS---WR 421
            G  P+    N+ I          +A   F+ +     +  +  +N LVDGLCK+    R
Sbjct: 282 KGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGR 341

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK----------- 470
           ++ A  LF  +   G  P+VVTY+ +I GL   G ++ A  LL  ME K           
Sbjct: 342 IKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNS 401

Query: 471 -------IRECLKAIELLHKMAKRYVKPDEIT 495
                  + +  +A+EL   M ++   PD IT
Sbjct: 402 LISGLCGLEKVDEALELFVAMVEKGCVPDTIT 433



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 107/360 (29%), Positives = 176/360 (48%), Gaps = 65/360 (18%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI-------GLL 119
           +L++A      M+     P + ++NSL          VN +C + R++         G  
Sbjct: 95  KLDEAQRILQRMVSENLVPDVVTYNSL----------VNGLCKNGRVDEARMLIVDKGFS 144

Query: 120 PDFVSLNILMNCFCKMI-GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
           P+ ++ + L++  C+ + GVS+A    G +L++ + P+V T   LI GL  + +  EA  
Sbjct: 145 PNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFE 204

Query: 179 LFTKFVAFDCRPNVI-------------------------------PNVICYASIIDGLC 207
           LF+  V     P+ I                               P+V+ + ++I+GLC
Sbjct: 205 LFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLC 264

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
           K+  V++  VL   M+ +G  P+A  +N+LI   C A  W+ A       L+        
Sbjct: 265 KEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKR------- 317

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKE---LFLDMKSRGIIPDVVVYSSLIDGY 324
               GV   P V++Y  +++ LCK     + KE   LF  M  +G +PDVV YS+LIDG 
Sbjct: 318 ----GV--KPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGL 371

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
              G++DDAR+L  ++E++GCIP+  +YN+LI+    +EKV+EAL L+  M+  G  PD 
Sbjct: 372 GKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDT 431



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 150/291 (51%), Gaps = 14/291 (4%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +++AL  F  ++     P +P++N L+  L  +        L   L   GL PD ++  +
Sbjct: 164 VSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTV 223

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
            ++  CK   V DA + L  +  K   PDVV+   +I GLC + +  EA  L +   A  
Sbjct: 224 FIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKG 283

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C PN I     + ++I G C+ G   K    F +M  RG+ P    YN L+   C A   
Sbjct: 284 CSPNAIS----FNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQ- 338

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
              +G    A+ L +  +    E G +  PDV++Y ++I+ L K   +D A+ L   M++
Sbjct: 339 ---EGRIKEAITLFDAMI----EKGRV--PDVVTYSALIDGLGKAGKLDDARRLLGAMEA 389

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
           +G IP+V  Y+SLI G C + ++D+A +LFV++  +GC+PDT +Y T+I++
Sbjct: 390 KGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITYGTIISA 440



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 124/260 (47%), Gaps = 20/260 (7%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  +N+A   F+ ++     P   ++   +  L       + + + + ++  G +PD VS
Sbjct: 196 EDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVS 255

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N ++N  CK   V +A V L  +  K  SP+ ++   LI G C  GK+ +A   F + +
Sbjct: 256 HNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEML 315

Query: 185 AFDCRPNVIPNVICYASIIDGLCK---DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
               +  V P V+ Y  ++DGLCK   +G + +   LF  M  +G  PD   Y++LI   
Sbjct: 316 ----KRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGL 371

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
             A   +DA+     A+E               C P+V +Y S+I+ LC    VD+A EL
Sbjct: 372 GKAGKLDDAR-RLLGAMEAKG------------CIPNVYTYNSLISGLCGLEKVDEALEL 418

Query: 302 FLDMKSRGIIPDVVVYSSLI 321
           F+ M  +G +PD + Y ++I
Sbjct: 419 FVAMVEKGCVPDTITYGTII 438


>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 135/417 (32%), Positives = 199/417 (47%), Gaps = 42/417 (10%)

Query: 57  LSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           L   S S     + A+  FN M+ M+P P    FN++L +L   K Y   I L ++    
Sbjct: 28  LHYQSHSQPHYHHHAVASFNLMLLMRPPPPTFLFNNILSSLVKNKRYPTVISLFKQFEPN 87

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ PD  +L+IL+NCFC    ++ AF     IL++ F PD +TL  LI+GLC +G+  + 
Sbjct: 88  GITPDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPDAITLNTLIKGLCFRGEIKKT 147

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
                + VA   +     + + Y ++I+GLCK G    V  L   ++G  + PD  +YN+
Sbjct: 148 LYFHDQVVAQGFQ----LDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNT 203

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           +I   C      DA    S      E  V G         PDV++Y ++I+  C    + 
Sbjct: 204 IINSLCKNKLLGDACDVYS------EMIVKG-------ISPDVVTYTTLIHGFCIMGKMK 250

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR---IDDARKLFVSIESEGCIPDTSSYN 353
           +A  L  +MK + I PDV  +S LID     G+   +D+A  LF  ++ +  IPD  +YN
Sbjct: 251 EAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYN 310

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLV 413
           +LI+   K   +E A++L  EM   G++P                      D+  +  L+
Sbjct: 311 SLIDGLCKNHHLERAIALLKEMKEHGIQP----------------------DVYSYTILL 348

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           DGLCK  RL  A E F+ L   G   NV  Y VMI GLC  G   +A DL   ME K
Sbjct: 349 DGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEGK 405



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/275 (30%), Positives = 137/275 (49%), Gaps = 20/275 (7%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L  +L    + PD V  N ++N  CK   + DA      ++ K  SPDVVT   LI G C
Sbjct: 185 LLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFC 244

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDG---FVNKVRVLFLDMKGR 225
           + GK  EA  L  +        N+ P+V  ++ +ID L K+G    V++   LF +MK +
Sbjct: 245 IMGKMKEAFSLLNEMKL----KNINPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHK 300

Query: 226 GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSI 285
            + PD   YNSLI   C   + E A    +   E+ E  +           PDV SY  +
Sbjct: 301 NMIPDIVTYNSLIDGLCKNHHLERA---IALLKEMKEHGIQ----------PDVYSYTIL 347

Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
           ++ LCK   ++ AKE F  +  +G   +V  Y+ +I+G C  G   +A  L   +E +GC
Sbjct: 348 LDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEGKGC 407

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           +P+  ++ T+I + S+ ++ ++A  +  EMI+ G+
Sbjct: 408 MPNAITFRTIICALSEKDENDKAEKILREMIARGL 442



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 124/262 (47%), Gaps = 20/262 (7%)

Query: 90  FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149
           +N+++ +L   K   +   +   +   G+ PD V+   L++ FC M  + +AF  L  + 
Sbjct: 201 YNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMK 260

Query: 150 RKVFSPDVVTLGCLIRGLCMQGK---FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGL 206
            K  +PDV T   LI  L  +GK     EA  LF +        N+IP+++ Y S+IDGL
Sbjct: 261 LKNINPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMK----HKNMIPDIVTYNSLIDGL 316

Query: 207 CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266
           CK+  + +   L  +MK  GI PD + Y  L+   C        KG     LE+ +EF  
Sbjct: 317 CKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLC--------KG---GRLEIAKEFFQ 365

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
                G  CH +V  Y  +IN LCK  L  +A +L   M+ +G +P+ + + ++I     
Sbjct: 366 HLLVKG--CHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEGKGCMPNAITFRTIICALSE 423

Query: 327 MGRIDDARKLFVSIESEGCIPD 348
               D A K+   + + G + +
Sbjct: 424 KDENDKAEKILREMIARGLLKE 445



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 123/274 (44%), Gaps = 34/274 (12%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P    + +I++SL K+        LF   +  GI PD+   S LI+ +C    I  A  +
Sbjct: 56  PPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSV 115

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC---------- 386
           F +I   G  PD  + NTLI       ++++ L  + ++++ G + D             
Sbjct: 116 FANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSYGTLINGLCK 175

Query: 387 ---ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                  A L R L     + D+ ++N +++ LCK+  L  A +++ ++   G  P+VVT
Sbjct: 176 AGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVT 235

Query: 444 YTVMICGLCIEGGIEKAYDLLPDM---------------------EEKIRECLKAIELLH 482
           YT +I G CI G +++A+ LL +M                     E K +   +A+ L  
Sbjct: 236 YTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAMSLFE 295

Query: 483 KMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           +M  + + PD +T + L + L K+ +    + LL
Sbjct: 296 EMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALL 329



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 74/168 (44%), Gaps = 5/168 (2%)

Query: 61  SKSGEVELND-ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
            K G+ ++ D A+  F  M H    P + ++NSL+  L    +    I L + +   G+ 
Sbjct: 279 GKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQ 338

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD  S  IL++  CK   +  A      +L K    +V     +I GLC  G F EA  L
Sbjct: 339 PDVYSYTILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLFGEAMDL 398

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI 227
            +K     C    +PN I + +II  L +    +K   +  +M  RG+
Sbjct: 399 KSKMEGKGC----MPNAITFRTIICALSEKDENDKAEKILREMIARGL 442


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 139/455 (30%), Positives = 216/455 (47%), Gaps = 58/455 (12%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           ++G++E   AL FF  M   + +P + +++ L+  L         + L E +   G  PD
Sbjct: 91  RAGKIET--ALEFFRKMDD-RCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPD 147

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            ++  IL++  CK   V+ A+  L  +L     P++VT   L+ GLC   + ++A  L  
Sbjct: 148 VITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMR 207

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
                 C PNV+     Y ++IDGLCK G V     +  DM  +G  PD  +YN LI   
Sbjct: 208 DMTCRGCTPNVVT----YGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGL 263

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C A   +++       + L    V+G         PDV++Y S+I  LC+   +D+A  L
Sbjct: 264 CKADQVDES-------IALLRRAVSGG------IKPDVVTYSSVIYGLCRSNRLDEACRL 310

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
            L +KSRG  PDV++YS+LIDG C  G++D+A  L+  +  +GC  D  +Y+TLI+   K
Sbjct: 311 LLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCK 370

Query: 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
             +V+EA  L   M+ MG  P                          +N L+ GLC    
Sbjct: 371 AGRVDEAHLLLARMVRMGTPPST----------------------MTYNSLIKGLCDLNH 408

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELL 481
           L  A EL +++ R    P+ VTY ++I G+C    ++ A                A++  
Sbjct: 409 LDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSA----------------ALDYF 452

Query: 482 HKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
            +M    V PD IT SIL E L K ++ HE  +L+
Sbjct: 453 QEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLV 487



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 119/432 (27%), Positives = 193/432 (44%), Gaps = 92/432 (21%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
           P+VVT   LI GLC   +   A  LF    + +C P+++     Y +++DGL + G + +
Sbjct: 8   PNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVT----YNTLLDGLFRTGKLER 63

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA------------------------ 250
              LF +M  R  + D   +N L+   C A   E A                        
Sbjct: 64  AMALFQEMLDRRSH-DVISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVITYSVLIDG 122

Query: 251 --KGN-TSAALELHEE---------------FVNG--------------NGELGVICHPD 278
             K N  S A+EL E                 V+G                 L   C P+
Sbjct: 123 LCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPN 182

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
           +++Y S+++ LC+   V  A  L  DM  RG  P+VV Y +LIDG C +GR+ DA  +  
Sbjct: 183 LVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLA 242

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCIL------ 388
            +  +G  PD   YN LIN   K ++V+E+++L    +S G++PD    +S I       
Sbjct: 243 DMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSN 302

Query: 389 ---EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
              EA  L   + +     D+ +++ L+DGLCK+ ++  A++L++ +   G + +VVTY+
Sbjct: 303 RLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYS 362

Query: 446 VMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKR 487
            +I GLC  G +++A+ LL  M                     +    +AIEL+ +M + 
Sbjct: 363 TLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERS 422

Query: 488 YVKPDEITVSIL 499
              P  +T +IL
Sbjct: 423 NCAPSAVTYNIL 434



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 108/205 (52%), Gaps = 13/205 (6%)

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
           C P+V++Y S+I+ LCK+   D+A+ELF  MKS    P +V Y++L+DG    G+++ A 
Sbjct: 6   CEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAM 65

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM--------ISMGVRPDNSC 386
            LF  +       D  S+N L+    +  K+E AL  + +M        I+  V  D  C
Sbjct: 66  ALFQEMLDRRS-HDVISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVITYSVLIDGLC 124

Query: 387 ----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
               + +A EL  ++       D+  +  LVDGLCK  ++ +AWE+ +++   G  PN+V
Sbjct: 125 KANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLV 184

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDM 467
           TY  ++ GLC    +  A  L+ DM
Sbjct: 185 TYNSLLHGLCRARRVSDALALMRDM 209



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 115/231 (49%), Gaps = 31/231 (13%)

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M+  G  P+VV Y+SLIDG C     D A++LF  ++S  C P   +YNTL++   +  K
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 365 VEEALSLYGEM--------ISMGVRPDNSC----ILEAAELFRTLHNTKFELDLTVFNCL 412
           +E A++L+ EM        IS  +     C    I  A E FR + + +   ++  ++ L
Sbjct: 61  LERAMALFQEMLDRRSHDVISFNILVTGLCRAGKIETALEFFRKMDD-RCSPNVITYSVL 119

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE--- 469
           +DGLCK+ R+  A EL + +   G  P+V+TYT+++ GLC E  +  A+++L +M +   
Sbjct: 120 IDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGC 179

Query: 470 ---------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505
                          + R    A+ L+  M  R   P+ +T   L + L K
Sbjct: 180 VPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCK 230



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 32/145 (22%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L E +   G   D V+ + L++  CK   V +A + L R++R    P  +T   LI+GLC
Sbjct: 345 LYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLC 404

Query: 169 MQGKFTEASGLFTKFVAFDCRPN--------------------------------VIPNV 196
                 EA  L  +    +C P+                                VIP+ 
Sbjct: 405 DLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAALDYFQEMIDNGVIPDH 464

Query: 197 ICYASIIDGLCKDGFVNKVRVLFLD 221
           I Y+ +++GL K   ++++R L LD
Sbjct: 465 ITYSILLEGLKKSKDLHELRHLVLD 489


>gi|296087920|emb|CBI35203.3| unnamed protein product [Vitis vinifera]
          Length = 394

 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 131/413 (31%), Positives = 199/413 (48%), Gaps = 84/413 (20%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+DAL  F+ M+HM P P +  F  LL ++A  K+Y   + LS+++++ G+ PD  +L I
Sbjct: 46  LDDALSSFHRMLHMHPPPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTI 105

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++N FC +  V  A   L +IL+    PD  T   L+RGLC+ GK  EA  +F K V   
Sbjct: 106 VINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEG 165

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            +PN  PN+I                        M  +GI PD F YNSLI   C    W
Sbjct: 166 FQPN--PNLI------------------------MIAKGISPDIFTYNSLIHALCNLCEW 199

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           +           L  E V           P+V+S   ++++LCK+  V +A ++   M  
Sbjct: 200 KHVT-------TLLNEMVKSK------IMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQ 246

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            G+ PDVV Y++L+DG+CL   +D+A K+F  +   GC+ +  SYNTLIN          
Sbjct: 247 GGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLIN---------- 296

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLR---- 423
             +L+ EM++ G  P                      +L  ++ L+D LCK+ RL     
Sbjct: 297 --ALFNEMVACGQIP----------------------NLVTYSILLDYLCKNHRLAEAMA 332

Query: 424 -------SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
                  +A +LF  L   G +P+V T+ +MI GLC  G +++A  L  +M+E
Sbjct: 333 LLKAIEGTARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDE 385



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 119/272 (43%), Gaps = 32/272 (11%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P +  +  ++ S+ K         L   M S GI PDV   + +I+ +C + R+D A  +
Sbjct: 63  PPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTIVINSFCHLNRVDFALSV 122

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEA------ 390
              I   G  PDT+++ TL+     + K+ EAL ++ +M+  G +P+ + I+ A      
Sbjct: 123 LAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNPNLIMIAKGISPD 182

Query: 391 --------------------AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
                                 L   +  +K   ++   N +VD LCK  ++  A ++  
Sbjct: 183 IFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVD 242

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC--LKAIELLHKMAKRY 488
            + + G EP+VVTY  ++ G C+   +++A  +   M      C  +    L++ +    
Sbjct: 243 MMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINALFNEM 302

Query: 489 VK----PDEITVSILEELLNKDENCHECMNLL 516
           V     P+ +T SIL + L K+    E M LL
Sbjct: 303 VACGQIPNLVTYSILLDYLCKNHRLAEAMALL 334



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 78/369 (21%), Positives = 151/369 (40%), Gaps = 58/369 (15%)

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           + DA  +  R+L     P +     L+  +     ++    L  K  +F     + P+V 
Sbjct: 46  LDDALSSFHRMLHMHPPPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSF----GIPPDVY 101

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
               +I+  C    V+    +   +   G  PD   + +L+R  C         G    A
Sbjct: 102 TLTIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVV-------GKIGEA 154

Query: 258 LELHEEFV----NGNGELGVICH---PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
           L++ ++ V      N  L +I     PD+ +Y S+I++LC          L  +M    I
Sbjct: 155 LDVFDKMVGEGFQPNPNLIMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKI 214

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
           +P+VV  + ++D  C  G++ +A  +   +   G  PD  +Y  L++ +    +++EA+ 
Sbjct: 215 MPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVK 274

Query: 371 LYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
           ++  M+       N C+                 ++  +N L++ L            F 
Sbjct: 275 VFDMMVR------NGCVC----------------NVVSYNTLINAL------------FN 300

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVK 490
           ++   G  PN+VTY++++  LC    + +A  LL  +E   R      +L   +A R ++
Sbjct: 301 EMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGTAR------DLFSNLAPRGLQ 354

Query: 491 PDEITVSIL 499
           PD  T +I+
Sbjct: 355 PDVWTHNIM 363


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 134/419 (31%), Positives = 202/419 (48%), Gaps = 66/419 (15%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL P+  +LNIL+NCFC++  V   F  L + ++    P +VT   LI GL   GKF +A
Sbjct: 5   GLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQA 64

Query: 177 SGLFTKFVAFDCRPNVIP-------------------------------NVICYASIIDG 205
             LF   VA  C+P+                                  NV+ Y+++I  
Sbjct: 65  VELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHS 124

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG--NTSAALELHEE 263
           LCK   VN+   +F  MK + I P  F Y SLI+  C    W++A    N   +L +   
Sbjct: 125 LCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPN 184

Query: 264 FVNGNGELGVIC--------------------HPDVLSYCSIINSLCKDVLVDKAKELFL 303
            V  N  +   C                     PDV++Y S++        V +A++LF 
Sbjct: 185 VVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFD 244

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            M ++G  PDV  YS LI+GYC   RID+A++LF  +  +G  P+  SYNTLI+   ++ 
Sbjct: 245 VMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLG 304

Query: 364 KVEEALSLYGEMISMGVRP---------DNSC----ILEAAELFRTLHNTKFELDLTVFN 410
           ++ EA  L+  M + G  P         D  C    + +A  LFR + +T  + +L ++N
Sbjct: 305 RLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYN 364

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
            LV+ +CKS  L+ A ELF +L   G +PNV  YT +I GLC EG +++A +   +ME+
Sbjct: 365 ILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMED 423



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 165/340 (48%), Gaps = 28/340 (8%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            +N+AL  F+YM     +P + ++ SL+  L     +     L   + ++ ++P+ V+ N
Sbjct: 130 RVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFN 189

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +L++ FCK   V  A   L  +      PDVVT   L+ G  M  +  EA  LF   +  
Sbjct: 190 VLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITK 249

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C+P+V      Y+ +I+G CK   +++ + LF +M  +G  P+   YN+LI   C    
Sbjct: 250 GCKPDVFS----YSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGR 305

Query: 247 WEDAK---------GNTSAALELHEEFVNG---NGELG-----------VICHPDVLSYC 283
             +A+         GN    L  +   ++G    G LG               P+++ Y 
Sbjct: 306 LREAQDLFKNMHTNGNL-PNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYN 364

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
            ++N++CK   +  A+ELF ++   G+ P+V +Y+++I+G C  G +D+A + F ++E +
Sbjct: 365 ILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDD 424

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           GC PD  SYN +I  + + +    A+ L GEM   G   D
Sbjct: 425 GCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRGFITD 464



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 129/275 (46%), Gaps = 19/275 (6%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           M  M   P + ++NSL+   +     V    L + + T G  PD  S +IL+N +CK   
Sbjct: 211 MTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKR 270

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           + +A      ++ +  +P+ V+   LI GLC  G+  EA  LF            +PN+ 
Sbjct: 271 IDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHT----NGNLPNLY 326

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            YA ++DG CK G++ K   LF  M+   + P+  +YN L+   C + N +DA+      
Sbjct: 327 TYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDAR------ 380

Query: 258 LELHEE-FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV 316
            EL  E FV G         P+V  Y +IIN LCK+ L+D+A E F +M+  G  PD   
Sbjct: 381 -ELFSELFVIG-------LQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFS 432

Query: 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
           Y+ +I G+        A  L   +   G I D  +
Sbjct: 433 YNVIIRGFLQHKDESRAVHLIGEMRDRGFITDAGT 467



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 94/220 (42%), Gaps = 40/220 (18%)

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M+  G+ P+    + LI+ +C + R+D    +       G  P   ++ TLIN   K+ K
Sbjct: 1   MELAGLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGK 60

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
             +A+ L+ +M++ G +PD+                        +  +++GLCK      
Sbjct: 61  FAQAVELFDDMVARGCQPDDY----------------------TYTTIINGLCKIGETAL 98

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-------------- 470
           A  LFKK+   G + NVVTY+ +I  LC    + +A D+   M+ K              
Sbjct: 99  AAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQ 158

Query: 471 ----IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
                    +A  LL++M    + P+ +T ++L +   K+
Sbjct: 159 GLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKE 198


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 121/401 (30%), Positives = 197/401 (49%), Gaps = 39/401 (9%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           +DAL  F  M+  +P P +  F+ L  ++    +Y   + LS+ +  +G+  D  SL+IL
Sbjct: 44  DDALASFRLMLLRKPLPCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSIL 103

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           +NCFC +  V      L +IL+    P +VT   L+ GLCM+GK  +   L+   +    
Sbjct: 104 INCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGL 163

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
           +PNV      Y  II+ L K G  N+       M+  G  P+   Y++LI  YC      
Sbjct: 164 QPNVYT----YNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYC------ 213

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
             +G    A  + +  V+        C P+V +Y S++N  CK   +++A +L  +   +
Sbjct: 214 -LRGQMDEARSVFDLMVSKG------CTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRK 266

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G++PD+V ++++I G C  GR   A++LF  I + G  P+  +Y  L++   K   +EEA
Sbjct: 267 GLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEA 326

Query: 369 LSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
            +L+ EM    V+P                      +L ++  L+D LCK  +++   EL
Sbjct: 327 FALFQEMQRSTVKP----------------------NLVIYTILIDSLCKCGKIKDGKEL 364

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           F +L   G +PNV TYT ++  LC EG I +A+ L   MEE
Sbjct: 365 FSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEE 405



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 144/332 (43%), Gaps = 44/332 (13%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + +F +LL  L  +      + L + +   GL P+  + N+++N   K    ++A   
Sbjct: 130 PSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGF 189

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNV------------ 192
           L ++ +    P+VV    LI G C++G+  EA  +F   V+  C PNV            
Sbjct: 190 LKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCK 249

Query: 193 -------------------IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233
                              +P+++ + +II GLC+ G     + LF  +   G  P+   
Sbjct: 250 IERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMT 309

Query: 234 YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDV 293
           Y  L+   C         GN   A  L +E             P+++ Y  +I+SLCK  
Sbjct: 310 YGVLLDGLC-------KHGNLEEAFALFQEMQRST------VKPNLVIYTILIDSLCKCG 356

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353
            +   KELF  +   G+ P+V  Y++L+   C  G I +A KLF  +E +GC PD  +YN
Sbjct: 357 KIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYN 416

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
            +I  + + +    A  L  EM++ G   D +
Sbjct: 417 VIIQGFLQHKDPSMARQLVEEMVNRGFSADAA 448



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 140/299 (46%), Gaps = 20/299 (6%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           SKSG+   N+AL F   M  +   P + ++++L+     +        + + + + G  P
Sbjct: 178 SKSGKA--NEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTP 235

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           +  +   LMN +CK+  + +A   L   LRK   PD+VT   +I GLC  G+   A  LF
Sbjct: 236 NVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLF 295

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
                + C     PN++ Y  ++DGLCK G + +   LF +M+   + P+  +Y  LI  
Sbjct: 296 R----YICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDS 351

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
            C     +D K       EL    ++          P+V +Y +++ +LCK+ L+ +A +
Sbjct: 352 LCKCGKIKDGK-------ELFSRLIDEG------LKPNVYTYTALVGALCKEGLIIEAHK 398

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           LF  M+  G  PD   Y+ +I G+        AR+L   + + G   D ++   L+N +
Sbjct: 399 LFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEMVNRGFSADAAT-RALLNDF 456



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 110/241 (45%), Gaps = 40/241 (16%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P ++ +  + +S+ +    +    L  +++  GI  D+   S LI+ +C + R+D    +
Sbjct: 60  PCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSILINCFCHLHRVDFGLSV 119

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
              I   G  P   ++ TL+N      K+++ + LY +M+  G++P+             
Sbjct: 120 LSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPN------------- 166

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
                    +  +N +++ L KS +   A    K++ + G  PNVV Y+ +I G C+ G 
Sbjct: 167 ---------VYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQ 217

Query: 457 IEKA---YDLL------PDMEE---------KIRECLKAIELLHKMAKRYVKPDEITVSI 498
           +++A   +DL+      P++           KI    +A++LL +  ++ + PD +T + 
Sbjct: 218 MDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTT 277

Query: 499 L 499
           +
Sbjct: 278 I 278


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 136/476 (28%), Positives = 221/476 (46%), Gaps = 46/476 (9%)

Query: 81  MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSD 140
           M  +P M +F  ++  L  +K       + ER    G  PD+V+ N+ ++  CK   V D
Sbjct: 1   MPCSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDD 60

Query: 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200
           AF  L ++  K   P  VT   L+ GL   G+  EA  +  + V         P +  Y 
Sbjct: 61  AFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMV----EKGNSPTLKTYT 116

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL 260
            +IDGL K G V + R +F+DM G G  PDAFVY +LI+  C         G    A  L
Sbjct: 117 VVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLC-------KSGKPEEAYAL 169

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK-SRGIIPDVVVYSS 319
           ++E          +  PDV++Y S+I+ LCK   + +A+++F D    RG IPD V Y+S
Sbjct: 170 YKEANARKHHATAV--PDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTS 227

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           +IDG C +GR+++  + F  + + G  PD  +Y  LI+ + K + + +A  +Y +M+  G
Sbjct: 228 IIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSG 287

Query: 380 ---------VRPDNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
                    +  D  C    + EA   F  +        +  ++ L+DG C    + +A 
Sbjct: 288 TVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAV 347

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY---------DLLPDME--------- 468
           ELF+++   G EPN+V+Y ++I GLC  G + KAY          L PD+          
Sbjct: 348 ELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGL 407

Query: 469 -EKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
            +++      +EL   M  +   P+  + SIL + + +       + +    +SR 
Sbjct: 408 CQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRG 463



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 136/268 (50%), Gaps = 17/268 (6%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G +   V+ NI+++  CK   V++A+     +  +     VVT   L+ G C +G  + A
Sbjct: 287 GTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAA 346

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             LF + +   C PN++     Y  II GLC+ G + K    F  +  R + PD + +N+
Sbjct: 347 VELFRRMLDRGCEPNLVS----YNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNA 402

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
            +   C  ++        S  +EL E  V+          P++ SY  +++ +C+   ++
Sbjct: 403 FLHGLCQRLD------TVSDGVELFESMVSQG------TSPNLHSYSILMDGICRAGGLE 450

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A E+F +M SRG+ PDVVV+++LI   C+ GR+D+A ++F  +E     PD  SY +L+
Sbjct: 451 VALEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRSA-PDAWSYWSLL 509

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDN 384
           +  S+ E++EEA  L   M   G  P +
Sbjct: 510 DGLSRCERMEEARLLSFHMKLQGCAPRH 537


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 136/417 (32%), Positives = 206/417 (49%), Gaps = 41/417 (9%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ PD    N +++C  K   + +A   L  I  +   PD VT G  I G    GK TEA
Sbjct: 215 GVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEA 274

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD-----A 231
           +  F + +       ++PN   Y  +I+G  K G + +   +F  +   G+ PD     A
Sbjct: 275 AKYFDEMLDH----GLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSA 330

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
           F++  L              G    AL++  E      E G++  PDV +Y S+I+  CK
Sbjct: 331 FIHGLL------------KNGRVQEALKVFSEL----KEKGLV--PDVFTYSSLISGFCK 372

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
              V+KA EL  +M  +GI P++ +Y++L+DG C  G I  ARKLF  +  +G  PD+ +
Sbjct: 373 QGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVT 432

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------NSCILE-----AAELFRTLH 398
           Y+T+I+ Y K E V EA SL+ EM S GV+P         + C  E     A  LFR + 
Sbjct: 433 YSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREML 492

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
              F   L+ FN L+DG CKS +++ A +LF+++      P+ VTYT +I   C  G +E
Sbjct: 493 QKGFATTLS-FNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKME 551

Query: 459 KAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
           +A  L  +M+E+         L  KM  + VKPDE+T  ++     K++N  E   L
Sbjct: 552 EANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKL 608



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 131/480 (27%), Positives = 201/480 (41%), Gaps = 97/480 (20%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL+P+  +  I+    C+   +++A +    + +    PD      LI G   +G   E 
Sbjct: 5   GLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEV 64

Query: 177 SGLFTKFVAFDCRPNVIP-NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
             L  K V   C    IP N+I Y  +I GLCK G + K   +   M   G  P++  + 
Sbjct: 65  --LRIKDVMVSCG---IPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFC 119

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
            LI  YC        + N   ALEL +E    N        P  +SY ++IN LC    +
Sbjct: 120 LLIEGYC-------REHNMGRALELLDEMEKRN------LVPSAVSYGAMINGLCHCKDL 166

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
             A +L   M   G+ P+VVVYS+LI GY   GRI++AR+L   +   G  PD   YN +
Sbjct: 167 SLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAI 226

Query: 356 IN-----------------------------------SYSKIEKVEEALSLYGEMISMGV 380
           I+                                    YSK  K+ EA   + EM+  G+
Sbjct: 227 ISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGL 286

Query: 381 RPDN-------------SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
            P+N               ++EA  +FR LH      D+   +  + GL K+ R++ A +
Sbjct: 287 MPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALK 346

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAI--------- 478
           +F +L   G  P+V TY+ +I G C +G +EKA++L  +M      CLK I         
Sbjct: 347 VFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEM------CLKGIAPNIFIYNA 400

Query: 479 ---------------ELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
                          +L   M ++ ++PD +T S + +   K EN  E  +L     S+ 
Sbjct: 401 LVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKG 460



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 113/436 (25%), Positives = 198/436 (45%), Gaps = 26/436 (5%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           SK+G+  + +A  +F+ M+     P  P +  L+         +  + +   L+ +G+LP
Sbjct: 266 SKTGK--MTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLP 323

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           D  + +  ++   K   V +A      +  K   PDV T   LI G C QG+  +A  L 
Sbjct: 324 DVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELH 383

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            +     C   + PN+  Y +++DGLCK G + + R LF  M  +G+ PD+  Y+++I  
Sbjct: 384 DEM----CLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDG 439

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
           YC          N + A  L  E  +          P    Y ++++  CK+  ++KA  
Sbjct: 440 YC-------KSENVAEAFSLFHEMPSKG------VQPHSFVYNALVHGCCKEGDMEKAMN 486

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           LF +M  +G     + +++LIDGYC   +I +A +LF  + ++  +PD  +Y T+I+ + 
Sbjct: 487 LFREMLQKG-FATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHC 545

Query: 361 KIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           K  K+EEA  L+ EM     +  N  +     LF  +     + D   +  ++   CK  
Sbjct: 546 KAGKMEEANLLFKEM-----QERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKED 600

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE-KIRECLKAIE 479
            L  A++L  ++   G       + ++I  LC    + +A  LL +M E  ++  L A  
Sbjct: 601 NLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACS 660

Query: 480 LLHKMAKRYVKPDEIT 495
            L +      K DE T
Sbjct: 661 TLVRSFHEAGKMDEAT 676



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 152/336 (45%), Gaps = 19/336 (5%)

Query: 62  KSGEVE----LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIG 117
           K GEVE    L+D +C       + P  F+  +N+L+  L           L + +   G
Sbjct: 372 KQGEVEKAFELHDEMCLKG----IAPNIFI--YNALVDGLCKSGDIQRARKLFDGMPEKG 425

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           L PD V+ + +++ +CK   V++AF     +  K   P       L+ G C +G   +A 
Sbjct: 426 LEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAM 485

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            LF + +            + + ++IDG CK   + +   LF +M  + I PD   Y ++
Sbjct: 486 NLFREML-----QKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTV 540

Query: 238 IRVYCCAVNWEDA----KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDV 293
           I  +C A   E+A    K      L +   F      +     PD ++Y  +I + CK+ 
Sbjct: 541 IDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKED 600

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353
            + +A +L  ++  +G++    ++  LI   C    + +A KL   +   G  P  ++ +
Sbjct: 601 NLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACS 660

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE 389
           TL+ S+ +  K++EA  ++  + S+G+ PD + +++
Sbjct: 661 TLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLID 696



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 150/332 (45%), Gaps = 37/332 (11%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           KSG+++    L  F+ M      P   ++++++      +       L   + + G+ P 
Sbjct: 407 KSGDIQRARKL--FDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPH 464

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
               N L++  CK   +  A      +L+K F+   ++   LI G C   K  EAS LF 
Sbjct: 465 SFVYNALVHGCCKEGDMEKAMNLFREMLQKGFAT-TLSFNTLIDGYCKSCKIQEASQLFQ 523

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR---------------- 225
           + +A      ++P+ + Y ++ID  CK G + +  +LF +M+ R                
Sbjct: 524 EMIA----KQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVA 579

Query: 226 -GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCS 284
            G+ PD   Y  +I  +C     ED   N   A +L +E V G G L      D+L    
Sbjct: 580 KGVKPDEVTYGLVIYAHC----KED---NLVEAFKLRDEVV-GKGMLTKGTIHDLL---- 627

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
            I +LCK   + +A +L  +M   G+ P +   S+L+  +   G++D+A ++F  ++S G
Sbjct: 628 -ITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLG 686

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
            +PDT++   L+N        E+A +L  +++
Sbjct: 687 LVPDTTTLIDLVNGNLNDTDSEDARNLIKQLV 718



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 83/166 (50%), Gaps = 22/166 (13%)

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M  +G++P+   Y+ +  G C   R+++A+  F  ++  G  PD ++ + LI+ + +   
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
           ++E L +   M+S G+                       ++L  +N L+ GLCK  ++  
Sbjct: 61  IDEVLRIKDVMVSCGI----------------------PINLITYNVLIHGLCKFGKMEK 98

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           A E+ K +   G +PN  T+ ++I G C E  + +A +LL +ME++
Sbjct: 99  AAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKR 144


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 123/407 (30%), Positives = 208/407 (51%), Gaps = 41/407 (10%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           M+ + PTP +  FN +L +L    +Y   I L  +L   G+ P  V+L ILMNC+C   G
Sbjct: 1   MLQISPTPPILQFNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGG 60

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           ++  F  L +IL+  + P+ +T   LI+G+C+ G+  EA       VA   + + +    
Sbjct: 61  ITFLFSILTKILKMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVS--- 117

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN-TSA 256
            YA +++GLCK G   + R     ++   +  D  +Y+++I   C        KG   + 
Sbjct: 118 -YAILMNGLCKMG---ETRAAMQMLRKTWVNADVVMYSTIIDSLC--------KGKFVTD 165

Query: 257 ALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV 316
           A  L+ E +      G+   P+V ++  ++++LCKD    +A  L   M  +G+ P+VV 
Sbjct: 166 AYRLYSEMIAK----GIF--PNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVT 219

Query: 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
           Y +++DGYCL+ +++ A  +F  +  EG  P+   YN +IN   K ++V+EA++L+ EM 
Sbjct: 220 YGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMH 279

Query: 377 SMGVRPDN----------------SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
              + PD                 S  LE  +  R++  T   +D+  +N L+  LCK+ 
Sbjct: 280 WKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKT---VDIITYNSLLHALCKNH 336

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            L  A  L K++   G +PNV TYT +I GLC +G +E AY +  ++
Sbjct: 337 HLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEI 383



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 156/302 (51%), Gaps = 23/302 (7%)

Query: 90  FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149
           +++++ +L   K+  +   L   +   G+ P+  + +IL++  CK      A   L  ++
Sbjct: 150 YSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMM 209

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD 209
           +K   P+VVT G ++ G C+  +  +A  +F   V    +  V PNV CY  II+GLCK 
Sbjct: 210 KKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMV----QEGVEPNVWCYNIIINGLCKK 265

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
             V++   LF +M  + I PD   YN LI   C         G  S +LEL +E  +   
Sbjct: 266 KRVDEAMNLFKEMHWKKINPDVVTYNILIDGLC-------KLGKISTSLELVDEMRSIGK 318

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
            +      D+++Y S++++LCK+  +D+A  L  ++K +GI P+V  Y++LIDG C  GR
Sbjct: 319 TV------DIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGR 372

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE 389
           ++DA  +F  I +EG      +YN +IN   K    +EAL+L   M       DN+CI +
Sbjct: 373 LEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEALALLSRM------EDNACIPD 426

Query: 390 AA 391
           A 
Sbjct: 427 AV 428



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 108/244 (44%), Gaps = 17/244 (6%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++N AL  FN M+     P +  +N ++  L  KK     + L + ++   + PD V+ N
Sbjct: 232 QVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYN 291

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           IL++  CK+  +S +   +  +     + D++T   L+  LC      +A  L  +    
Sbjct: 292 ILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIK-- 349

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                + PNV  Y ++IDGLCKDG +    V+F ++   G +   + YN +I   C    
Sbjct: 350 --DQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLC---- 403

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
               KG    AL L     +        C PD +SY +II +L +     K  +L   M 
Sbjct: 404 ---KKGLFDEALALLSRMEDN------ACIPDAVSYETIIYALSEKGETVKTNKLLCAMI 454

Query: 307 SRGI 310
            RG+
Sbjct: 455 VRGL 458



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 118/268 (44%), Gaps = 28/268 (10%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P +L +  I+ SL K      A  LF  ++  GI P +V  + L++ YC  G I     +
Sbjct: 8   PPILQFNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGGITFLFSI 67

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS--CIL------ 388
              I   G  P++ ++ TLI       +  EAL  +  +++ G + D     IL      
Sbjct: 68  LTKILKMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAILMNGLCK 127

Query: 389 --EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTV 446
             E     + L  T    D+ +++ ++D LCK   +  A+ L+ ++   G  PNV T+++
Sbjct: 128 MGETRAAMQMLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSI 187

Query: 447 MICGLCIEGGIEKAYDLLPDMEEK------------------IRECLKAIELLHKMAKRY 488
           ++  LC +   ++A +LL  M +K                  + +  KA+ + + M +  
Sbjct: 188 LVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEG 247

Query: 489 VKPDEITVSILEELLNKDENCHECMNLL 516
           V+P+    +I+   L K +   E MNL 
Sbjct: 248 VEPNVWCYNIIINGLCKKKRVDEAMNLF 275


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 146/543 (26%), Positives = 233/543 (42%), Gaps = 117/543 (21%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+DA+  F YM+  +P P +  F  LLG +   +     I L  ++    +  +  S  I
Sbjct: 57  LDDAIDLFGYMVRSRPLPCVIDFCKLLGVVVRMERPDVVISLHRKMEMRRIPCNIYSFTI 116

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ----------------- 170
           L+ CFC    +  A    G+I +  F P +VT   L+ GLC++                 
Sbjct: 117 LIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQICKPN 176

Query: 171 --------------GKFTEASGLFTKFVAFDCRPNVI----------------------- 193
                         G+  EA  L  + V    +PN I                       
Sbjct: 177 VIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLR 236

Query: 194 ---------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
                    PNV+ Y++IIDGL KDG     + LF +M+ +GI P+ F YN +I  +C +
Sbjct: 237 KMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSS 296

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
             W +A+       E+ E  ++          PDV+++  +IN+L K+    +A+EL+ +
Sbjct: 297 GRWSEAQ---RLLREMFERKMS----------PDVVTFSVLINALVKEGKFFEAEELYNE 343

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M  RGIIP+ + Y+S+IDG+    R+D A ++F  + ++GC PD  +++ LI+ Y   ++
Sbjct: 344 MLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKR 403

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL-------------TVFNC 411
           V++ + L  EM   G+  +          F  L N    LDL                N 
Sbjct: 404 VDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNT 463

Query: 412 LVDGLCKSWRLRSAWELFKKL-----------PRYGPEPNVVTYTVMICGLCIEGGIEKA 460
           L+DGLC + +L+ A E+FK +           P    EP+V TY ++ICGL  EG   +A
Sbjct: 464 LLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEA 523

Query: 461 YDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
                             EL  +M  R + PD IT + + + L K     E   +  S  
Sbjct: 524 E-----------------ELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMG 566

Query: 521 SRN 523
           S+ 
Sbjct: 567 SKG 569



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 127/473 (26%), Positives = 207/473 (43%), Gaps = 63/473 (13%)

Query: 64  GEVELNDALCFFNYMIHMQPT----PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           G  ++ D +   N +  M+      P +  +++++  L       +   L   +   G+ 
Sbjct: 221 GMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGIS 280

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+  + N ++N FC     S+A   L  +  +  SPDVVT   LI  L  +GKF EA  L
Sbjct: 281 PNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEEL 340

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           + + +       +IPN I Y S+IDG  K   ++    +F  M  +G  PD   ++ LI 
Sbjct: 341 YNEMLP----RGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILID 396

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            YC A   +D          LHE    G          + ++Y ++I+  C+   ++ A 
Sbjct: 397 GYCGAKRVDDGMK------LLHEMSRRG-------LVANTITYTTLIHGFCQLGNLNAAL 443

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE-----------GCIPD 348
           +L  +M S G+ P+VV  ++L+DG C  G++ DA ++F  ++                PD
Sbjct: 444 DLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPD 503

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFR 395
             +YN LI       K  EA  LY EM   G+ PD              S + EA ++F 
Sbjct: 504 VQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFD 563

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
           ++ +  F  D+  F  L++G CK  R+    E+F ++ R G   N +TY  +I G C  G
Sbjct: 564 SMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVG 623

Query: 456 GIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITV-SILEELLNKDE 507
            I  A D                 +  +M    V PD IT+ ++L  L +K+E
Sbjct: 624 NINGALD-----------------IFQEMISSGVYPDTITIRNMLTGLWSKEE 659



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 149/315 (47%), Gaps = 20/315 (6%)

Query: 63  SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF 122
           S +  L+ A   F  M     +P + +F+ L+    G K   + + L   ++  GL+ + 
Sbjct: 364 SKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANT 423

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF-- 180
           ++   L++ FC++  ++ A   L  ++     P+VVT   L+ GLC  GK  +A  +F  
Sbjct: 424 ITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKV 483

Query: 181 ---TKFVAFDCRP--NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
              +K       P  +V P+V  Y  +I GL  +G  ++   L+ +M  RG+ PD   YN
Sbjct: 484 MQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYN 543

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           S+I   C     ++A            +  +  G  G    PDV+++ ++IN  CK   V
Sbjct: 544 SVIDGLCKQSRLDEAT-----------QMFDSMGSKGF--SPDVVTFTTLINGYCKVGRV 590

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
               E+F +M  RGI+ + + Y +LI G+C +G I+ A  +F  + S G  PDT +   +
Sbjct: 591 GDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITIRNM 650

Query: 356 INSYSKIEKVEEALS 370
           +      E+++ A+ 
Sbjct: 651 LTGLWSKEELKRAVQ 665


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/351 (34%), Positives = 179/351 (50%), Gaps = 41/351 (11%)

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           DFV+   L+   CK+  +  A + LG+++ K F PDV T   +I  LC++ +  EA    
Sbjct: 10  DFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEAR--- 66

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            KF+      N+ PNV+ Y  +IDGLCK G V++   L   M+ + + P A  YNSLI  
Sbjct: 67  -KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISG 124

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
            C A          S A +L EE V         C PD+ +Y ++I   CK    D A  
Sbjct: 125 LCKA-------ERASEAYDLLEEMVYSG------CIPDIFTYTTLITGFCKSKKSDDALR 171

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS-IESEGCIPDTSSYNTLINSY 359
           +F  + +RG  PDVV YS LIDG C  GR+ +A  LF   I+S  C+P+T +YN+LI+ +
Sbjct: 172 VFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGF 231

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            ++ K++EA++L   M   G  P                      D+  +  L++G CK 
Sbjct: 232 CRMGKMDEAMNLLERMAETGSSP----------------------DVVTYTTLMNGFCKL 269

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            RL  A++L  ++ R G  P+VVT+T ++ GLC E  +  A  +L +M  K
Sbjct: 270 ARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRK 320



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 128/450 (28%), Positives = 208/450 (46%), Gaps = 45/450 (10%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  L++A  F   M +   TP + ++  L+  L         + L  ++     +P  V+
Sbjct: 59  ENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRK-KCVPTAVT 117

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N L++  CK    S+A+  L  ++     PD+ T   LI G C   K  +A  +F + V
Sbjct: 118 YNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLV 177

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM-KGRGIYPDAFVYNSLIRVYCC 243
           A   RP+V+     Y+ +IDGLCK+G + +   LF  M K     P+   YNSLI  +C 
Sbjct: 178 ARGFRPDVVT----YSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFC- 232

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                   G    A+ L E       E G    PDV++Y +++N  CK   +D A +L  
Sbjct: 233 ------RMGKMDEAMNLLERM----AETG--SSPDVVTYTTLMNGFCKLARLDDAYDLLN 280

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            M  +G+ PDVV ++SL+DG C   R+ DA  +   +  + C P   +YNT+++ Y +  
Sbjct: 281 QMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRAN 340

Query: 364 KVEEALSLYGE-------MISMGVRPDNSCIL----EAAELFRTLHNTKFELDLTVFNCL 412
           ++EEA     E       ++S  +     C +    EA EL       +   D+ ++  +
Sbjct: 341 QLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTV 400

Query: 413 VDGLCKSWRLRSAWELFKK-LPRYGPEPNVVTYTVMICGLCIEGGIEKA----------- 460
           +DGLC+  ++  A  +++K L   G  PN +TY+ ++ GLC  G +++A           
Sbjct: 401 IDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRARGYIEKGCVPN 460

Query: 461 ---YDLLPDMEEKIRECLKAIELLHKMAKR 487
              Y+LL D   K      A ELL  M +R
Sbjct: 461 IGTYNLLIDAFRKANRDEDARELLDDMVQR 490



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 118/442 (26%), Positives = 200/442 (45%), Gaps = 61/442 (13%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++ SL+  L   K     +    ++ + G  PD  +   +++  C    + +A   L  +
Sbjct: 13  TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
             +  +P+VVT   LI GLC  G+  EA  L +K      R   +P  + Y S+I GLCK
Sbjct: 73  ANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM-----RKKCVPTAVTYNSLISGLCK 127

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
               ++   L  +M   G  PD F Y +LI  +C +   +D       AL + E+ V   
Sbjct: 128 AERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDD-------ALRVFEQLVARG 180

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM-KSRGIIPDVVVYSSLIDGYCLM 327
                   PDV++Y  +I+ LCK+  + +A +LF  M KS   +P+ V Y+SLI G+C M
Sbjct: 181 ------FRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRM 234

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
           G++D+A  L   +   G  PD  +Y TL+N + K+ ++++A  L  +M   G+ P     
Sbjct: 235 GKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTP----- 289

Query: 388 LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
                            D+  F  L+DGLC+  RL  A  +  ++ R    P V TY  +
Sbjct: 290 -----------------DVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTI 332

Query: 448 ICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYV 489
           + G C    +E+A   +  +EE                  K+    +A+EL+ +  +R  
Sbjct: 333 LDGYCRANQLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRC 390

Query: 490 KPDEITVSILEELLNKDENCHE 511
            PD +  + + + L +++   E
Sbjct: 391 NPDVVMYTTVIDGLCREKKVDE 412



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 157/317 (49%), Gaps = 25/317 (7%)

Query: 65  EVELNDALCFFNYMIHMQP-TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV 123
           E  L +A+  F  MI      P   ++NSL+            + L ER+   G  PD V
Sbjct: 198 EGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVV 257

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           +   LMN FCK+  + DA+  L ++ RK  +PDVVT   L+ GLC + + ++A  +  + 
Sbjct: 258 TYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEM 317

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
               C P V      Y +I+DG C+   + + R   L+       P+   +N +IR   C
Sbjct: 318 RRKSCSPTVYT----YNTILDGYCRANQLEEARKFMLEEM--DCPPNVVSFNIMIRGL-C 370

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
            VN       +S A+EL EE           C+PDV+ Y ++I+ LC++  VD+A  ++ 
Sbjct: 371 KVN------RSSEAMELVEEARRRR------CNPDVVMYTTVIDGLCREKKVDEACRVYR 418

Query: 304 DM-KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
            M +  G +P+ + YS+L+ G C  G +D AR        +GC+P+  +YN LI+++ K 
Sbjct: 419 KMLEEPGCLPNSITYSTLVTGLCNAGMLDRARGYI----EKGCVPNIGTYNLLIDAFRKA 474

Query: 363 EKVEEALSLYGEMISMG 379
            + E+A  L  +M+  G
Sbjct: 475 NRDEDARELLDDMVQRG 491



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 142/309 (45%), Gaps = 68/309 (22%)

Query: 275 CHPDVLSYCSIINSLCK---------------------DVL--------------VDKAK 299
           C  D ++Y S+I  LCK                     DV               + +A+
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEAR 66

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           +   +M +R + P+VV Y+ LIDG C  GR+D+A  L   +  + C+P   +YN+LI+  
Sbjct: 67  KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK-CVPTAVTYNSLISGL 125

Query: 360 SKIEKVEEALSLYGEMISMGVRPD----NSCIL---------EAAELFRTLHNTKFELDL 406
            K E+  EA  L  EM+  G  PD     + I          +A  +F  L    F  D+
Sbjct: 126 CKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDV 185

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGP-EPNVVTYTVMICGLCIEGGIEKAYDLLP 465
             ++CL+DGLCK  RL+ A +LF ++ + G   PN VTY  +I G C  G +++A +LL 
Sbjct: 186 VTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLE 245

Query: 466 DMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDE 507
            M E                  K+     A +LL++M ++ + PD +T + L + L ++ 
Sbjct: 246 RMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCREN 305

Query: 508 NCHECMNLL 516
              + +++L
Sbjct: 306 RLSDAVHIL 314



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 92/212 (43%), Gaps = 32/212 (15%)

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSC 386
           + +  C  D  +Y +LI    K++++E+AL   G+M+S G  PD              + 
Sbjct: 2   VATNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENR 61

Query: 387 ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTV 446
           + EA +    + N     ++  +  L+DGLCK  R+  A  L  K+ R    P  VTY  
Sbjct: 62  LHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM-RKKCVPTAVTYNS 120

Query: 447 MICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRY 488
           +I GLC      +AYDLL +M                    K ++   A+ +  ++  R 
Sbjct: 121 LISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARG 180

Query: 489 VKPDEITVSILEELLNKDENCHECMNLLPSFL 520
            +PD +T S L + L K+    E ++L    +
Sbjct: 181 FRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMI 212


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/403 (30%), Positives = 203/403 (50%), Gaps = 47/403 (11%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           ++   G +P+  + N+L+N FCK+  V  A++ L  +     +P+VVT   +I G C Q 
Sbjct: 32  KMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQT 91

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
           K   A  LF + V   C    +PN++ Y +++ GLC++G +++   L  +M+ RG+ PD 
Sbjct: 92  KVDTAYKLFRQMVENGC----MPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDK 147

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
           F Y++L+   C         G    AL++ E+  NG+      C PDV++Y ++I  LCK
Sbjct: 148 FSYDTLMAGLC-------KTGKIDMALKVFEDNSNGD------CPPDVVAYSTLIAGLCK 194

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
              +D+A +LF  M+     PDVV +++L+DG C   R+ +A+++  ++E   C P+  +
Sbjct: 195 TGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVIT 254

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NS-----CILEAAE----LFRTLH 398
           Y++LI+   K  +V +A  ++  MI  G+ P+    NS     C+    +    L   + 
Sbjct: 255 YSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMT 314

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
            T    D+  +N L+DGLCK+ R   A  LF  +      P+V+TY+ +I G C    I+
Sbjct: 315 ATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERID 374

Query: 459 KAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEE 501
            A  L  D                 M K+ V PD +T S L E
Sbjct: 375 MARTLFDD-----------------MLKQAVLPDVVTFSTLVE 400



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 126/460 (27%), Positives = 198/460 (43%), Gaps = 81/460 (17%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           + +++ A   F  M+     P + ++N+LL  L           L + +   GL PD  S
Sbjct: 90  QTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFS 149

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            + LM   CK   +  A             PDVV    LI GLC  G+  EA  LF K  
Sbjct: 150 YDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMR 209

Query: 185 AFDCRPNVI-------------------------------PNVICYASIIDGLCKDGFVN 213
              C P+V+                               PNVI Y+S+IDGLCK G V 
Sbjct: 210 ENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVR 269

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE------------------------- 248
             + +F  M  RGI P+   YNSLI  +C     +                         
Sbjct: 270 DAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLI 329

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
           D    T  A E +  F +   +    C+PDV++Y  +I   CK   +D A+ LF DM  +
Sbjct: 330 DGLCKTGRAPEANRLFGDMKAKF---CNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQ 386

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
            ++PDVV +S+L++GYC  G +DDA +L   + +  C PD  +Y +L++ + K+ ++ EA
Sbjct: 387 AVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEA 446

Query: 369 LSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
             +   M   G +P                      ++  +  L+D  C++ +   A++L
Sbjct: 447 RRVLKRMAKRGCQP----------------------NVVTYTALIDAFCRAGKPTVAYKL 484

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
            +++   G +PNV+TY  +I G C  G +E+A  +L  +E
Sbjct: 485 LEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLE 524



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 131/480 (27%), Positives = 210/480 (43%), Gaps = 94/480 (19%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLL-GALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           L +A  +F  M      P   ++N L+ G     K +  ++ L E +   GL P+ V+ +
Sbjct: 23  LPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKE-MKESGLAPNVVTYS 81

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA---------S 177
            +++ FC+   V  A+    +++     P++VT   L+ GLC  G   EA          
Sbjct: 82  TVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRER 141

Query: 178 GLFTKFVAFD------CRPNVI----------------PNVICYASIIDGLCKDGFVNKV 215
           GL     ++D      C+   I                P+V+ Y+++I GLCK G +++ 
Sbjct: 142 GLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEA 201

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
             LF  M+     PD   + +L+   C     ++A+       ++ E   + N      C
Sbjct: 202 CKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQ-------QVLETMEDRN------C 248

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
            P+V++Y S+I+ LCK   V  A+E+F  M  RGI P+VV Y+SLI G+C+   +D A  
Sbjct: 249 TPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALL 308

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---------NSC 386
           L   + + GC+PD  +YNTLI+   K  +  EA  L+G+M +    PD           C
Sbjct: 309 LMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFC 368

Query: 387 ILEAAELFRTLHNTKFEL---------------------------------------DLT 407
            LE  ++ RTL +   +                                        D+ 
Sbjct: 369 KLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVY 428

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            +  LVDG CK  R+  A  + K++ + G +PNVVTYT +I   C  G    AY LL +M
Sbjct: 429 TYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEM 488



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 183/375 (48%), Gaps = 48/375 (12%)

Query: 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV 215
           +V+T   +I GLC   +  EA+  F K      +   +PN   Y  +I+G CK   V++ 
Sbjct: 6   NVITWTIMIDGLCKANRLPEATTYFAKMK----KKGTVPNEWTYNVLINGFCKVHKVHRA 61

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
            +L  +MK  G+ P+   Y+++I  +C        +     A +L  + V  NG     C
Sbjct: 62  YLLLKEMKESGLAPNVVTYSTVIHGFC-------RQTKVDTAYKLFRQMVE-NG-----C 108

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
            P++++Y ++++ LC++ L+D+A EL  +M+ RG+ PD   Y +L+ G C  G+ID A K
Sbjct: 109 MPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALK 168

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------ 383
           +F    +  C PD  +Y+TLI    K  +++EA  L+ +M      PD            
Sbjct: 169 VFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLC 228

Query: 384 -NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
               + EA ++  T+ +     ++  ++ L+DGLCK+ ++R A E+FK++   G EPNVV
Sbjct: 229 KGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVV 288

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKM 484
           TY  +I G C+  G++ A  L+ +M                    K     +A  L   M
Sbjct: 289 TYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDM 348

Query: 485 AKRYVKPDEITVSIL 499
             ++  PD IT S L
Sbjct: 349 KAKFCNPDVITYSCL 363



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 117/459 (25%), Positives = 205/459 (44%), Gaps = 64/459 (13%)

Query: 47  VEEKTKLLKYLSENSKSGEV----ELNDALCFFNYMIHMQP----------TPFMPSFNS 92
           ++E  KL + + ENS   +V     L D LC  + +   Q           TP + +++S
Sbjct: 198 LDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSS 257

Query: 93  LLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKV 152
           L+  L       +   + +R+   G+ P+ V+ N L++ FC   GV  A + +  +    
Sbjct: 258 LIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATG 317

Query: 153 FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFV 212
             PD++T   LI GLC  G+  EA+ LF    A  C P+VI     Y+ +I G CK   +
Sbjct: 318 CLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVIT----YSCLIGGFCKLERI 373

Query: 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK--------GNTSAALELHEEF 264
           +  R LF DM  + + PD   +++L+  YC A   +DA+         + S  +  +   
Sbjct: 374 DMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSL 433

Query: 265 VNGNGELGVI--------------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
           V+G  ++G +              C P+V++Y ++I++ C+      A +L  +M   G+
Sbjct: 434 VDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGV 493

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIE-SEGCIPDTSSYNTLINSYSKIEKVEEAL 369
            P+V+ Y SLI G+C  G +++ARK+   +E  E C  D  +Y  +++   +  ++  AL
Sbjct: 494 QPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAAL 553

Query: 370 SLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
            L   +   G  P +                       ++  L+ GLC+   L  A E+ 
Sbjct: 554 ELLEAIKQSGTPPRHD----------------------IYVALIRGLCQGKELGKAMEVL 591

Query: 430 KKLP-RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +++       PN   Y  +I  L  EG  E+A  L  ++
Sbjct: 592 EEMTLSRKSRPNAEAYEAVIQELAREGRHEEANALADEL 630



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 125/262 (47%), Gaps = 30/262 (11%)

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
           C  +V+++  +I+ LCK   + +A   F  MK +G +P+   Y+ LI+G+C + ++  A 
Sbjct: 3   CEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAY 62

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----------- 383
            L   ++  G  P+  +Y+T+I+ + +  KV+ A  L+ +M+  G  P+           
Sbjct: 63  LLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGL 122

Query: 384 --NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
             N  + EA EL   +     + D   ++ L+ GLCK+ ++  A ++F+        P+V
Sbjct: 123 CRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDV 182

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEE 501
           V Y+ +I GLC  G ++                 +A +L  KM +   +PD +T + L +
Sbjct: 183 VAYSTLIAGLCKTGRLD-----------------EACKLFEKMRENSCEPDVVTFTALMD 225

Query: 502 LLNKDENCHECMNLLPSFLSRN 523
            L K +   E   +L +   RN
Sbjct: 226 GLCKGDRLQEAQQVLETMEDRN 247


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 146/523 (27%), Positives = 239/523 (45%), Gaps = 88/523 (16%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            + DA   F+ M      P   ++N+LL  L       +   L ER+   G  PD V+ N
Sbjct: 65  RIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYN 124

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ FCK+  + +A       +++ F PDVVT   LI G C   K  EA  +  + V+ 
Sbjct: 125 TLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVS- 183

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
               +++P+V+ Y S+++GLCK+G V++ R+L +D   +G  P+   Y++LI   C    
Sbjct: 184 ---ESLVPDVVTYNSLVNGLCKNGRVDEARMLIVD---KGFSPNVITYSTLISGLC---- 233

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD-------------- 292
             + +   SA   L +  +NG       C PD++SY ++I+ L ++              
Sbjct: 234 -RELRRLESARQLLEKMVLNG-------CKPDIVSYNALIHGLAREQGVSEALKLFGSVL 285

Query: 293 ------------VLVD---------KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
                       +L+D         +A ELF  +   G+ PD + Y+  IDG C  GR++
Sbjct: 286 RQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVE 345

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCI 387
           DA  +   ++ +GC+PD  S+N +IN   K ++V+EA  L   M + G  P+    N+ I
Sbjct: 346 DALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLI 405

Query: 388 L---------EAAELFRTLHNTKFELDLTVFNCLVDGLCKS---WRLRSAWELFKKLPRY 435
                     +A   F+ +     +  +  +N LVDGLCK+    R++ A  LF  +   
Sbjct: 406 CGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEK 465

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK------------------IRECLKA 477
           G  P+VVTY+ +I GL   G ++ A  LL  ME K                  + +  +A
Sbjct: 466 GRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEA 525

Query: 478 IELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
           +EL   M ++   PD IT   +   L K E   + + L    L
Sbjct: 526 LELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSL 568



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/353 (32%), Positives = 182/353 (51%), Gaps = 43/353 (12%)

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
           L D  + NI ++  C+   + DA      + +  F P+ +T   L+ GLC  G+ ++A  
Sbjct: 47  LCDISTFNIYISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQA 106

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           L+ + +    +    P+V+ Y +++ G CK G +++   +F     RG  PD   YN+LI
Sbjct: 107 LYERMI----KAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALI 162

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
             +C A   ++A+      +   E  V           PDV++Y S++N LCK+  VD+A
Sbjct: 163 NGFCKADKLDEAQRILQRMVS--ESLV-----------PDVVTYNSLVNGLCKNGRVDEA 209

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCL-MGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           + L +D   +G  P+V+ YS+LI G C  + R++ AR+L   +   GC PD  SYN LI+
Sbjct: 210 RMLIVD---KGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIH 266

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
             ++ + V EAL L+G ++  G  P                      ++  +N L+DGL 
Sbjct: 267 GLAREQGVSEALKLFGSVLRQGYEP----------------------EVPTYNILIDGLL 304

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           K  R+  A+ELF  L ++G EP+ +TYTV I GLC  G +E A  +L DM+EK
Sbjct: 305 KEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEK 357



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 117/390 (30%), Positives = 180/390 (46%), Gaps = 69/390 (17%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L E++   G  PD VS N L++   +  GVS+A    G +LR+ + P+V T   LI GL 
Sbjct: 245 LLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLL 304

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVI-------------------------------PNVI 197
            + +  EA  LF+  V     P+ I                               P+V+
Sbjct: 305 KEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVV 364

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            + ++I+GLCK+  V++  VL   M+ +G  P+A  +N+LI   C A  W+ A       
Sbjct: 365 SHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEM 424

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE---LFLDMKSRGIIPDV 314
           L+            GV   P V++Y  +++ LCK     + KE   LF  M  +G +PDV
Sbjct: 425 LKR-----------GV--KPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDV 471

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           V YS+LIDG    G++DDAR+L  ++E++GCIP+  +YN+LI+    ++KV+EAL L+  
Sbjct: 472 VTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVA 531

Query: 375 MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
           M+  G  PD                         +  ++  LCK   +  A  LF     
Sbjct: 532 MVEKGCVPDT----------------------ITYGTIISALCKQEMVDKALALFDGSLE 569

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            G  P    Y  +I GLC    +++A  LL
Sbjct: 570 AGVVPTSGMYFSLIDGLCAVARVDEALKLL 599



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 109/366 (29%), Positives = 180/366 (49%), Gaps = 36/366 (9%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  +++AL  F  ++     P +P++N L+  L  +        L   L   GL PD ++
Sbjct: 271 EQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAIT 330

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
             + ++  CK   V DA + L  +  K   PDVV+   +I GLC + +  EA  L +   
Sbjct: 331 YTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGME 390

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
           A  C PN I     + ++I G C+ G   K    F +M  RG+ P    YN L+   C A
Sbjct: 391 AKGCSPNAIS----FNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKA 446

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                 +G    A+ L +  +    E G +  PDV++Y ++I+ L K   +D A+ L   
Sbjct: 447 RQ----EGRIKEAITLFDAMI----EKGRV--PDVVTYSALIDGLGKAGKLDDARRLLGA 496

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M+++G IP+V  Y+SLI G C + ++D+A +LFV++  +GC+PDT +Y T+I++  K E 
Sbjct: 497 MEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEM 556

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
           V++AL+L+   +  GV P +                       ++  L+DGLC   R+  
Sbjct: 557 VDKALALFDGSLEAGVVPTSG----------------------MYFSLIDGLCAVARVDE 594

Query: 425 AWELFK 430
           A +L +
Sbjct: 595 ALKLLQ 600



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 144/309 (46%), Gaps = 38/309 (12%)

Query: 233 VYNSLIRVY---CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSL 289
           VY+ L+R+Y      V         S  +E    FV    +L V    D+ ++   I+ L
Sbjct: 4   VYDKLVRIYSPDAYTVGILLRSLLKSGKIEKAHRFVE---QLLVKGLCDISTFNIYISGL 60

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
           C+   +  A+ +F  M+  G  P+ + Y++L+ G C  GR+ DA+ L+  +   G  PD 
Sbjct: 61  CRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDV 120

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCI---------LEAAELFRT 396
            +YNTL++ + K+ K++EAL ++   +  G  PD    N+ I          EA  + + 
Sbjct: 121 VTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQR 180

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           + +     D+  +N LV+GLCK+ R+  A  L   +   G  PNV+TY+ +I GLC E  
Sbjct: 181 MVSESLVPDVVTYNSLVNGLCKNGRVDEARML---IVDKGFSPNVITYSTLISGLCRE-- 235

Query: 457 IEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                         +R    A +LL KM     KPD ++ + L   L +++   E + L 
Sbjct: 236 --------------LRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLF 281

Query: 517 PSFLSRNQE 525
            S L +  E
Sbjct: 282 GSVLRQGYE 290


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/351 (34%), Positives = 179/351 (50%), Gaps = 41/351 (11%)

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           DFV+   L+   CK+  +  A + LG+++ K F PDV T   +I  LC++ +  EA    
Sbjct: 10  DFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEAR--- 66

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            KF+      N+ PNV+ Y  +IDGLCK G V++   L   M+ + + P A  YNSLI  
Sbjct: 67  -KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISG 124

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
            C A          S A +L EE V         C PD+ +Y ++I   CK    D A  
Sbjct: 125 LCKA-------ERASEAYDLLEEMVYSG------CIPDIFTYTTLITGFCKSKKSDDALR 171

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS-IESEGCIPDTSSYNTLINSY 359
           +F  + +RG  PDVV YS LIDG C  GR+ +A  LF   I+S  C+P+T +YN+LI+ +
Sbjct: 172 VFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGF 231

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            ++ K++EA++L   M   G  P                      D+  +  L++G CK 
Sbjct: 232 CRMGKMDEAMNLLERMAETGSSP----------------------DVVTYTTLMNGFCKL 269

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            RL  A++L  ++ R G  P+VVT+T ++ GLC E  +  A  +L +M  K
Sbjct: 270 ARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRK 320



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 129/450 (28%), Positives = 208/450 (46%), Gaps = 45/450 (10%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  L++A  F   M +   TP + ++  L+  L         + L  ++     +P  V+
Sbjct: 59  ENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRK-KCVPTAVT 117

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N L++  CK    S+A+  L  ++     PD+ T   LI G C   K  +A  +F + V
Sbjct: 118 YNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLV 177

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM-KGRGIYPDAFVYNSLIRVYCC 243
           A   RP+V+     Y+ +IDGLCK+G + +   LF  M K     P+   YNSLI  +C 
Sbjct: 178 ARGFRPDVVT----YSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFC- 232

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                   G    A+ L E       E G    PDV++Y +++N  CK   +D A +L  
Sbjct: 233 ------RMGKMDEAMNLLERM----AETG--SSPDVVTYTTLMNGFCKLARLDDAYDLLN 280

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            M  +G+ PDVV ++SL+DG C   R+ DA  +   +  + C P   +YNT+++ Y +  
Sbjct: 281 QMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRAN 340

Query: 364 KVEEALSLYGE-------MISMGVRPDNSCIL----EAAELFRTLHNTKFELDLTVFNCL 412
           ++EEA     E       ++S  +     C +    EA EL       +   D+ ++  +
Sbjct: 341 QLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTV 400

Query: 413 VDGLCKSWRLRSAWELFKK-LPRYGPEPNVVTYTVMICGLCIEGGIEKA----------- 460
           +DGLC+  ++  A  +++K L   G  PN +TY+ +I GLC  G +++A           
Sbjct: 401 IDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLDRARGYIEKGCVPN 460

Query: 461 ---YDLLPDMEEKIRECLKAIELLHKMAKR 487
              Y+LL D   K      A ELL  M +R
Sbjct: 461 IGTYNLLIDAFRKANRDEDARELLDDMVQR 490



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 118/442 (26%), Positives = 200/442 (45%), Gaps = 61/442 (13%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++ SL+  L   K     +    ++ + G  PD  +   +++  C    + +A   L  +
Sbjct: 13  TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
             +  +P+VVT   LI GLC  G+  EA  L +K      R   +P  + Y S+I GLCK
Sbjct: 73  ANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM-----RKKCVPTAVTYNSLISGLCK 127

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
               ++   L  +M   G  PD F Y +LI  +C +   +D       AL + E+ V   
Sbjct: 128 AERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDD-------ALRVFEQLVARG 180

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM-KSRGIIPDVVVYSSLIDGYCLM 327
                   PDV++Y  +I+ LCK+  + +A +LF  M KS   +P+ V Y+SLI G+C M
Sbjct: 181 ------FRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRM 234

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
           G++D+A  L   +   G  PD  +Y TL+N + K+ ++++A  L  +M   G+ P     
Sbjct: 235 GKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTP----- 289

Query: 388 LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
                            D+  F  L+DGLC+  RL  A  +  ++ R    P V TY  +
Sbjct: 290 -----------------DVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTI 332

Query: 448 ICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYV 489
           + G C    +E+A   +  +EE                  K+    +A+EL+ +  +R  
Sbjct: 333 LDGYCRANQLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRC 390

Query: 490 KPDEITVSILEELLNKDENCHE 511
            PD +  + + + L +++   E
Sbjct: 391 NPDVVMYTTVIDGLCREKKVDE 412



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 157/317 (49%), Gaps = 25/317 (7%)

Query: 65  EVELNDALCFFNYMIHMQP-TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV 123
           E  L +A+  F  MI      P   ++NSL+            + L ER+   G  PD V
Sbjct: 198 EGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVV 257

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           +   LMN FCK+  + DA+  L ++ RK  +PDVVT   L+ GLC + + ++A  +  + 
Sbjct: 258 TYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEM 317

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
               C P V      Y +I+DG C+   + + R   L+       P+   +N +IR   C
Sbjct: 318 RRKSCSPTVYT----YNTILDGYCRANQLEEARKFMLEEM--DCPPNVVSFNIMIRGL-C 370

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
            VN       +S A+EL EE           C+PDV+ Y ++I+ LC++  VD+A  ++ 
Sbjct: 371 KVN------RSSEAMELVEEARRRR------CNPDVVMYTTVIDGLCREKKVDEACRVYR 418

Query: 304 DM-KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
            M +  G +P+ + YS+LI G C  G +D AR        +GC+P+  +YN LI+++ K 
Sbjct: 419 KMLEEPGCLPNSITYSTLITGLCNAGMLDRARGYI----EKGCVPNIGTYNLLIDAFRKA 474

Query: 363 EKVEEALSLYGEMISMG 379
            + E+A  L  +M+  G
Sbjct: 475 NRDEDARELLDDMVQRG 491



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 142/309 (45%), Gaps = 68/309 (22%)

Query: 275 CHPDVLSYCSIINSLCK---------------------DVL--------------VDKAK 299
           C  D ++Y S+I  LCK                     DV               + +A+
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEAR 66

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           +   +M +R + P+VV Y+ LIDG C  GR+D+A  L   +  + C+P   +YN+LI+  
Sbjct: 67  KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK-CVPTAVTYNSLISGL 125

Query: 360 SKIEKVEEALSLYGEMISMGVRPD----NSCIL---------EAAELFRTLHNTKFELDL 406
            K E+  EA  L  EM+  G  PD     + I          +A  +F  L    F  D+
Sbjct: 126 CKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDV 185

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGP-EPNVVTYTVMICGLCIEGGIEKAYDLLP 465
             ++CL+DGLCK  RL+ A +LF ++ + G   PN VTY  +I G C  G +++A +LL 
Sbjct: 186 VTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLE 245

Query: 466 DMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDE 507
            M E                  K+     A +LL++M ++ + PD +T + L + L ++ 
Sbjct: 246 RMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCREN 305

Query: 508 NCHECMNLL 516
              + +++L
Sbjct: 306 RLSDAVHIL 314



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 92/212 (43%), Gaps = 32/212 (15%)

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSC 386
           + +  C  D  +Y +LI    K++++E+AL   G+M+S G  PD              + 
Sbjct: 2   VATNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENR 61

Query: 387 ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTV 446
           + EA +    + N     ++  +  L+DGLCK  R+  A  L  K+ R    P  VTY  
Sbjct: 62  LHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM-RKKCVPTAVTYNS 120

Query: 447 MICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRY 488
           +I GLC      +AYDLL +M                    K ++   A+ +  ++  R 
Sbjct: 121 LISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARG 180

Query: 489 VKPDEITVSILEELLNKDENCHECMNLLPSFL 520
            +PD +T S L + L K+    E ++L    +
Sbjct: 181 FRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMI 212


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 142/548 (25%), Positives = 243/548 (44%), Gaps = 110/548 (20%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A  F   M++ +  P   ++N+L+   +    +   + + + +    +LPD V+L++
Sbjct: 283 MDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSM 342

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           LM   CK   + +A      +  K  +PDV +   ++ G   +G   + + LF   +   
Sbjct: 343 LMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDG 402

Query: 188 CRPN-------------------------------VIPNVICYASIIDGLCKDGFVNKVR 216
             P+                               V P+V+ Y ++I  LC+ G ++   
Sbjct: 403 IAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAM 462

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
             F  M  +G+ PD + YN LI+ +C         G+   A EL  E +N NG      H
Sbjct: 463 EKFNQMIDQGVAPDKYAYNCLIQGFC-------THGSLLKAKELISEIMN-NG-----MH 509

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
            D++ + SIIN+LCK   V  A+ +F    + G+ PD VVYS L+DGYCL+G+++ A ++
Sbjct: 510 LDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRV 569

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------- 383
           F ++ S G  P+   Y TL+N Y KI +++E LSL+ EM+  G++P              
Sbjct: 570 FDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQ 629

Query: 384 -----------------------------------NSCILEAAELFRTLHNTKFELDLTV 408
                                              N C  EA  LF+ L     ++++  
Sbjct: 630 AGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIIT 689

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
            N ++DG+ ++ R+  A +LF  + R    PNVVTY++MI  L  EG +E+A D+   M+
Sbjct: 690 LNTMIDGMFQTRRVEEAKDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQ 749

Query: 469 EK------------IRECLKAIEL------LHKMAKRYVKPDEITVSILEELLNKDENCH 510
                         +RE LK  E+      L K+ +R    + +T  +L +L +    C 
Sbjct: 750 NAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLFSSKGTCR 809

Query: 511 ECMNLLPS 518
           E +  LP+
Sbjct: 810 EQIRFLPA 817



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 123/478 (25%), Positives = 199/478 (41%), Gaps = 103/478 (21%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAF-VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
           GL  + +  N L+  FC+     +A  + L R       PDV +   L++ LC QGK  +
Sbjct: 154 GLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQ 213

Query: 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
           A  L       +      PNV+ Y ++IDG  K+G VNK   LF +M  RGI PD   YN
Sbjct: 214 ADDLLRMMA--EGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYN 271

Query: 236 SLIRVYCCAV--------------------NWE--------DAKGNTSAALELHEEFVNG 267
           S++   C A                     NW          + G    A+ + +E    
Sbjct: 272 SVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRH 331

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY--- 324
           +        PDV++   ++ SLCK   + +A+++F  M  +G  PDV  Y+ +++GY   
Sbjct: 332 S------ILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATK 385

Query: 325 -CLM-------------------------------GRIDDARKLFVSIESEGCIPDTSSY 352
            CL+                               G +D A  +F  +   G  PD  +Y
Sbjct: 386 GCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTY 445

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHN 399
            T+I +  +I K+++A+  + +MI  GV PD             +  +L+A EL   + N
Sbjct: 446 RTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMN 505

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
               LD+  F+ +++ LCK  R+  A  +F      G  P+ V Y++++ G C+ G +EK
Sbjct: 506 NGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEK 565

Query: 460 AYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           A  +   M                    KI    + + L  +M +R +KP  I  SI+
Sbjct: 566 ALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSII 623



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 107/248 (43%), Gaps = 51/248 (20%)

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
           +  P   +Y  +++   +    + A   F  +   G+  ++++ + L++G+C   R D+A
Sbjct: 119 VLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEA 178

Query: 334 RKLFVSIESE-GCIPDTSS-------------------------------------YNTL 355
             + +    E GC+PD  S                                     YNT+
Sbjct: 179 LDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTV 238

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPD----NSCI--------LEAAELF-RTLHNTKF 402
           I+ + K   V +A  L+ EM+  G+ PD    NS +        ++ AE F R + N + 
Sbjct: 239 IDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRV 298

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
             +   +N L+ G   + + + A  +FK++ R+   P+VVT ++++  LC  G I++A D
Sbjct: 299 LPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARD 358

Query: 463 LLPDMEEK 470
           +   M  K
Sbjct: 359 VFDTMAMK 366



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 43/170 (25%)

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406
           P + +Y  L++  ++  + E AL+ +G+++  G+R                      +++
Sbjct: 122 PTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLR----------------------VNI 159

Query: 407 TVFNCLVDGLCKSWRLRSAWE-LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
            + N L++G C++ R   A + L  + P  G  P+V +Y++++  LC +G   +A DLL 
Sbjct: 160 IIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLR 219

Query: 466 DMEEKIRECL--------------------KAIELLHKMAKRYVKPDEIT 495
            M E    C                     KA +L  +M +R + PD +T
Sbjct: 220 MMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVT 269


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 141/480 (29%), Positives = 230/480 (47%), Gaps = 53/480 (11%)

Query: 4   SSPATSRTAFKVKPSSSLRNSKKPISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSKS 63
           SSPA S  A ++  + S+R++    S + E++ +     S             L   S  
Sbjct: 12  SSPAVS--AARLFCTRSIRDTLAKKSRDGESDEAGFGGES-------------LKLQSGF 56

Query: 64  GEVE-LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF 122
            E++ L+DA+  F YM+  +P P +  F  L+G +         I L +++  + +  + 
Sbjct: 57  HEIKGLDDAIDLFGYMVRSRPLPSVIDFCKLMGVVVRMGRPDVVISLHKKMEMLRMPCNA 116

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
            S  ILM CFC    +  A    G+I +  F P VVT   L+ GLC++ + +EA  LF +
Sbjct: 117 YSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQ 176

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
                C+PNV+     + ++++GLC++G V +   L   M   G+ P+   Y +++   C
Sbjct: 177 M----CKPNVVT----FTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMC 228

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICH--PDVLSYCSIINSLCKDVLVDKAKE 300
                    G+T +AL L  +          + H  P+V+ Y +II+ L KD     A  
Sbjct: 229 -------KMGDTVSALNLLRKMEE-------VSHIIPNVVIYNTIIDGLWKDGRHSDAHN 274

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           LF++M+ + I PD+V Y+ +I+G+C+ GR  DA +L   +      PD  +++ LIN++ 
Sbjct: 275 LFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFV 334

Query: 361 KIEKVEEALSLYGEMISMGVRP---------DNSCI---LEAAELFRTLHNTKF-ELDLT 407
           K  K  EA  LY EM+   + P         D  C    L+AAE    L  TK    D+ 
Sbjct: 335 KEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDII 394

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            FN L+ G C++ R+    +L  ++   G   N +TYT +I G C  G +  A DLL +M
Sbjct: 395 TFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEM 454



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 123/482 (25%), Positives = 207/482 (42%), Gaps = 102/482 (21%)

Query: 64  GEVELNDALCFFNYMIHMQPT----PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           G  ++ D +   N +  M+      P +  +N+++  L     + +   L   +    + 
Sbjct: 226 GMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIF 285

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V+ N ++N FC     SDA   L  +L +  +PDVVT   LI     +GKF EA  L
Sbjct: 286 PDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEEL 345

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           + + +      ++IP+ + Y+S+IDG CK   ++    +F     +G  PD   +N+LI 
Sbjct: 346 YDEMLP----RSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIA 401

Query: 240 VYCCAVNWEDA----------------------------KGNTSAALELHEEFVNG---- 267
            YC A   +D                              G+ +AA +L +E ++     
Sbjct: 402 GYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCP 461

Query: 268 --------------NGEL------------------------GVICHPDVLSYCSIINSL 289
                         NG+L                        GV   PDV +Y  +I  L
Sbjct: 462 NVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGV--EPDVQTYNILICGL 519

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
             +    +A+EL+ +M  RGI+PD + YSS+IDG C   R+D+A ++F S+ S+   PD 
Sbjct: 520 INEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDV 579

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVF 409
            ++NTLI  Y K   V++ L L+ EM   G+  D    +     FR + N          
Sbjct: 580 VTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDN---------- 629

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
              +DG         A ++F+++   G  P+ +T   M+ GL  +  +E+A  +L D++ 
Sbjct: 630 ---IDG---------ALDIFQEMISSGVYPDTITIRNMLTGLWSKEELERAVAMLEDLQM 677

Query: 470 KI 471
            +
Sbjct: 678 SV 679



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 155/366 (42%), Gaps = 57/366 (15%)

Query: 167 LCMQGKFTEASGL--FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224
           L +Q  F E  GL        +  R   +P+VI +  ++  + + G  + V  L   M+ 
Sbjct: 50  LKLQSGFHEIKGLDDAIDLFGYMVRSRPLPSVIDFCKLMGVVVRMGRPDVVISLHKKMEM 109

Query: 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCS 284
             +  +A+ +  L++ +C           + + L           +LG   HP V+++ +
Sbjct: 110 LRMPCNAYSFTILMKCFC-----------SCSKLPFALSTFGKITKLGF--HPTVVTFNT 156

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           +++ LC +  + +A +LF  M      P+VV +++L++G C  GR+ +A  L   +  +G
Sbjct: 157 LLHGLCVEDRISEALDLFHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMLEDG 212

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL 404
             P+  +Y T+++   K+     AL+L  +M                E+   + N     
Sbjct: 213 LQPNQITYGTIVDGMCKMGDTVSALNLLRKM---------------EEVSHIIPN----- 252

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            + ++N ++DGL K  R   A  LF ++      P++VTY  MI G CI G    A    
Sbjct: 253 -VVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAE--- 308

Query: 465 PDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQ 524
                         +LL +M +R + PD +T S L     K+    E   L    L R+ 
Sbjct: 309 --------------QLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSI 354

Query: 525 EESKLT 530
             S +T
Sbjct: 355 IPSTVT 360


>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
 gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 126/441 (28%), Positives = 214/441 (48%), Gaps = 56/441 (12%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+DAL  FN M+   P P +  FN LL ++   K Y   + L + +   G+  +  +L+I
Sbjct: 21  LDDALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLSI 80

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+NCFC +  V   F   G+ L++ F PDVV    LI G+C  GK   A+GL  +     
Sbjct: 81  LINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVG 140

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C    +P+V+   S++ G C  G ++KVR +F  M  +G+ PD + Y+  I  YC     
Sbjct: 141 C----VPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKI 196

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           ++       A+EL +E        GV+  P+ ++Y ++I +LC+ +    A+ LF  M +
Sbjct: 197 DE-------AMELFDEM----SHRGVV--PNAVTYNTLIKALCQALRPRDAQVLFRKMCA 243

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            G+ PD++ YS+L+DG+C  G +D+   LF  ++     PD   Y  +IN   +  KV++
Sbjct: 244 CGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKD 303

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           A  +   +I  G++P                      D+  +  LVDGLC+   +  A  
Sbjct: 304 AKEVLSRLIVEGLKP----------------------DVHTYTALVDGLCREGSIIEALR 341

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKR 487
           LF+K+   G  P   +Y V++ G C++                  +    ++L+H+MA R
Sbjct: 342 LFRKMEEDGCMPGSCSYNVLLQG-CLQHN----------------DTSTVVQLIHEMADR 384

Query: 488 YVKPDEITVSILEELLNKDEN 508
               D +T + L++ L  +++
Sbjct: 385 GFYADAVTRTFLKDFLPGNDS 405



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 88/173 (50%), Gaps = 4/173 (2%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++++A+  F+ M H    P   ++N+L+ AL       +   L  ++   GL PD ++ +
Sbjct: 195 KIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYS 254

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ FCK   + +  V    + R++  PD+V    +I G+C   K  +A  + ++ +  
Sbjct: 255 TLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIV- 313

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
                + P+V  Y +++DGLC++G + +   LF  M+  G  P +  YN L++
Sbjct: 314 ---EGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQ 363



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 33/208 (15%)

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
           G +DDA   F  +      P    +N L++S  +++K E  +SL+ EM   G++  N C 
Sbjct: 19  GNLDDALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKY-NVCT 77

Query: 388 LEA-AELFRTLHNTK-------------FELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
           L      F  LH+               F+ D+ +F  L+DG+C+  +   A  L K++ 
Sbjct: 78  LSILINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMG 137

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLL---------PDMEE---------KIRECL 475
             G  P+VVT   ++ G C +G I+K   +          PD+           K+ +  
Sbjct: 138 LVGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKID 197

Query: 476 KAIELLHKMAKRYVKPDEITVSILEELL 503
           +A+EL  +M+ R V P+ +T + L + L
Sbjct: 198 EAMELFDEMSHRGVVPNAVTYNTLIKAL 225


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 142/480 (29%), Positives = 217/480 (45%), Gaps = 69/480 (14%)

Query: 67  ELNDALCFFNYMIHMQP-------TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           +L  A+  F  M+  +        +P + +++ L+  L         + L E +   G  
Sbjct: 164 KLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCS 223

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD ++  IL++  CK   V+ A+  L  +L     P++VT   L+ GLC   + ++A  L
Sbjct: 224 PDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALAL 283

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
                   C PNV+     Y ++IDGLCK G V     +  DM  +G  PD  +YN LI 
Sbjct: 284 MRDMTCRGCTPNVVT----YGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLIN 339

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C A   +++       + L    V+G         PDV++Y S+I  LC+   +D+A 
Sbjct: 340 GLCKADQVDES-------IALLRRAVSGG------IKPDVVTYSSVIYGLCRSNRLDEAC 386

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            L L +KSRG  PDV++YS+LIDG C  G++D+A  L+  +  +GC  D  +Y+TLI+  
Sbjct: 387 RLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGL 446

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            K  +V+EA  L   M+ MG  P                          +N L+ GLC  
Sbjct: 447 CKAGRVDEAHLLLARMVRMGTPPST----------------------MTYNSLIKGLCDL 484

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC--------------------IEGGIEK 459
             L  A EL +++ R    P+ VTY ++I G+C                      GG   
Sbjct: 485 NHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTAL 544

Query: 460 ---AYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
              AY  L D   K     +A++   +M    V PD IT SIL E L K ++ HE  +L+
Sbjct: 545 DTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLV 604



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 140/527 (26%), Positives = 233/527 (44%), Gaps = 86/527 (16%)

Query: 67  ELNDALCFFNYM--IHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E++ A   F+ M   ++ P  F+ S   L+  L   K  ++ +     +   G++ D V 
Sbjct: 24  EIDQAQRCFDEMRSKNLVPNVFLCSI--LIDGLCKAKRSIDALRCFRAMQGSGIVADTVI 81

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
              L++   K   +  A   L  +      P+VVT   LI GLC   +   A  LF    
Sbjct: 82  YTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMK 141

Query: 185 AFDCRPNVI--------------------------------------PNVICYASIIDGL 206
           + +C P+++                                      PNVI Y+ +IDGL
Sbjct: 142 SVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGL 201

Query: 207 CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266
           CK   V++   L   MK RG  PD   Y  L+   C        +   +AA E+  E ++
Sbjct: 202 CKANRVSQAVELLESMKARGCSPDVITYTILVDGLC-------KESKVAAAWEVLREMLD 254

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
                   C P++++Y S+++ LC+   V  A  L  DM  RG  P+VV Y +LIDG C 
Sbjct: 255 AG------CVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCK 308

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--- 383
           +GR+ DA  +   +  +G  PD   YN LIN   K ++V+E+++L    +S G++PD   
Sbjct: 309 VGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVT 368

Query: 384 -NSCIL---------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
            +S I          EA  L   + +     D+ +++ L+DGLCK+ ++  A++L++ + 
Sbjct: 369 YSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMA 428

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECL 475
             G + +VVTY+ +I GLC  G +++A+ LL  M                     +    
Sbjct: 429 GDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLD 488

Query: 476 KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
           +AIEL+ +M +    P  +T +IL   + + E     + LL    +R
Sbjct: 489 EAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKAR 535



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 119/410 (29%), Positives = 190/410 (46%), Gaps = 55/410 (13%)

Query: 152 VFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF 211
           +  PDV T   L+RG C  G+  +A   F +  +     N++PNV   + +IDGLCK   
Sbjct: 4   ICQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRS----KNLVPNVFLCSILIDGLCKAKR 59

Query: 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGEL 271
                  F  M+G GI  D  +Y +L+        W++ + + + A+ LHE   +G    
Sbjct: 60  SIDALRCFRAMQGSGIVADTVIYTALLSGL-----WKEKRLDQALAI-LHEMRDHG---- 109

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
              C P+V++Y S+I+ LCK+   D+A+ELF  MKS    P +V Y++L+DG    G+++
Sbjct: 110 ---CEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLE 166

Query: 332 DARKLFVSI-------ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD- 383
            A  LF  +         + C P+  +Y+ LI+   K  +V +A+ L   M + G  PD 
Sbjct: 167 RAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDV 226

Query: 384 ------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
                        S +  A E+ R + +     +L  +N L+ GLC++ R+  A  L + 
Sbjct: 227 ITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRD 286

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRE 473
           +   G  PNVVTY  +I GLC  G ++ A  +L DM +                  K  +
Sbjct: 287 MTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQ 346

Query: 474 CLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
             ++I LL +     +KPD +T S +   L +     E   LL    SR 
Sbjct: 347 VDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRG 396



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 101/326 (30%), Positives = 148/326 (45%), Gaps = 25/326 (7%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G V+  DA      MI    TP +  +N L+  L         I L  R  + G+ PD
Sbjct: 308 KVGRVK--DACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPD 365

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+ + ++   C+   + +A   L  +  +   PDV+    LI GLC  GK  EA  L+ 
Sbjct: 366 VVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYE 425

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
                 C  +V+     Y+++IDGLCK G V++  +L   M   G  P    YNSLI+  
Sbjct: 426 VMAGDGCDADVVT----YSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGL 481

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
            C +N  D       A+EL EE    N      C P  ++Y  +I+ +C+   VD A  L
Sbjct: 482 -CDLNHLD------EAIELVEEMERSN------CAPSAVTYNILIHGMCRMERVDSAVVL 528

Query: 302 FLDMKSR-----GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
               K+R     G   D + YSSLIDG C  GR+ +A   F  +   G IPD  +Y+ L+
Sbjct: 529 LEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPDHITYSILL 588

Query: 357 NSYSKIEKVEEALSL-YGEMISMGVR 381
               K + + E   L   +M+ +G R
Sbjct: 589 EGLKKSKDLHELRHLVLDQMVQLGYR 614


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 140/548 (25%), Positives = 243/548 (44%), Gaps = 110/548 (20%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A  F   M++ +  P   ++N+L+   +    +   + + + +    +LPD V+L++
Sbjct: 273 MDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSM 332

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           LM   CK   + +A      +  K  +PDV +   ++ G   +G   + + LF   +   
Sbjct: 333 LMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDG 392

Query: 188 CRPN-------------------------------VIPNVICYASIIDGLCKDGFVNKVR 216
             P+                               V P+V+ Y ++I  LC+ G ++   
Sbjct: 393 IAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAM 452

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
             F  M  +G+ PD + YN LI+ +C         G+   A EL  E +N NG      H
Sbjct: 453 EKFNQMIDQGVAPDKYAYNCLIQGFC-------THGSLLKAKELISEIMN-NG-----MH 499

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
            D++ + SIIN+LCK   V  A+ +F    + G+ PD VVY+ L+DGYCL+G+++ A ++
Sbjct: 500 LDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRV 559

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------- 383
           F ++ S G  P+   Y TL+N Y KI +++E LSL+ EM+  G++P              
Sbjct: 560 FDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFE 619

Query: 384 -----------------------------------NSCILEAAELFRTLHNTKFELDLTV 408
                                              N C  EA  LF+ L     ++++  
Sbjct: 620 AGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIIT 679

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
            N ++DG+ ++ R+  A +LF  + R    P+VVTY++MI  L  EG +E+A D+   M+
Sbjct: 680 LNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQ 739

Query: 469 EK------------IRECLKAIEL------LHKMAKRYVKPDEITVSILEELLNKDENCH 510
                         +RE LK  E+      L K+ +R    + +T  +L +L +    C 
Sbjct: 740 NAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLFSSKGTCR 799

Query: 511 ECMNLLPS 518
           E +  LP+
Sbjct: 800 EQIRFLPA 807



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 123/478 (25%), Positives = 198/478 (41%), Gaps = 103/478 (21%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAF-VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
           GL  + +  N L+  FC+     +A  + L R       PDV +   L++ LC QGK  +
Sbjct: 144 GLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQ 203

Query: 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
           A  L       +      PNV+ Y ++IDG  K+G VNK   LF +M  RGI PD   YN
Sbjct: 204 ADDLLRMMA--EGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYN 261

Query: 236 SLIRVYCCAV--------------------NWE--------DAKGNTSAALELHEEFVNG 267
           S++   C A                     NW          + G    A+ + +E    
Sbjct: 262 SVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRH 321

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY--- 324
           +        PDV++   ++ SLCK   + +A+++F  M  +G  PDV  Y+ +++GY   
Sbjct: 322 S------ILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATK 375

Query: 325 -CLM-------------------------------GRIDDARKLFVSIESEGCIPDTSSY 352
            CL+                               G +D A  +F  +   G  PD  +Y
Sbjct: 376 GCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTY 435

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHN 399
            T+I +  +I K+++A+  + +MI  GV PD             +  +L+A EL   + N
Sbjct: 436 RTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMN 495

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
               LD+  F+ +++ LCK  R+  A  +F      G  P+ V Y +++ G C+ G +EK
Sbjct: 496 NGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEK 555

Query: 460 AYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           A  +   M                    KI    + + L  +M +R +KP  I  SI+
Sbjct: 556 ALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSII 613



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 107/248 (43%), Gaps = 51/248 (20%)

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
           +  P   +Y  +++   +    + A   F  +   G+  ++++ + L++G+C   R D+A
Sbjct: 109 VLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEA 168

Query: 334 RKLFVSIESE-GCIPDTSS-------------------------------------YNTL 355
             + +    E GC+PD  S                                     YNT+
Sbjct: 169 LDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTV 228

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPD----NSCI--------LEAAELF-RTLHNTKF 402
           I+ + K   V +A  L+ EM+  G+ PD    NS +        ++ AE F R + N + 
Sbjct: 229 IDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRV 288

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
             +   +N L+ G   + + + A  +FK++ R+   P+VVT ++++  LC  G I++A D
Sbjct: 289 LPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARD 348

Query: 463 LLPDMEEK 470
           +   M  K
Sbjct: 349 VFDTMAMK 356



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 43/170 (25%)

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406
           P + +Y  L++  ++  + E AL+ +G+++  G+R                      +++
Sbjct: 112 PTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLR----------------------VNI 149

Query: 407 TVFNCLVDGLCKSWRLRSAWE-LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
            + N L++G C++ R   A + L  + P  G  P+V +Y++++  LC +G   +A DLL 
Sbjct: 150 IIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLR 209

Query: 466 DMEEKIRECL--------------------KAIELLHKMAKRYVKPDEIT 495
            M E    C                     KA +L  +M +R + PD +T
Sbjct: 210 MMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVT 259


>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62914, mitochondrial; Flags: Precursor
 gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats. EST gb|AA728420 comes from this gene
           [Arabidopsis thaliana]
 gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 528

 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 119/470 (25%), Positives = 223/470 (47%), Gaps = 92/470 (19%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           ++EL+DA+  F  M   +P P +  F+ LL A+A    +   I   E++  +G+  +  +
Sbjct: 56  DIELDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYT 115

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            NIL+NCFC+   +S A   LG++++  + PD+VTL  L+ G C   + ++A  L  + V
Sbjct: 116 YNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMV 175

Query: 185 AFDCRPNVI-------------------------------PNVICYASIIDGLCKDG--- 210
               +P+ +                               P+++ Y ++++GLCK G   
Sbjct: 176 EMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTD 235

Query: 211 ----FVNKVRV----------------------------LFLDMKGRGIYPDAFVYNSLI 238
                +NK+                              LF +M+ +G+ P+   Y+SLI
Sbjct: 236 LALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLI 295

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
              C    W DA    S  +E                +P+++++ ++I++  K   + KA
Sbjct: 296 SCLCNYGRWSDASRLLSDMIERK-------------INPNLVTFSALIDAFVKKGKLVKA 342

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
           ++L+ +M  R I P++  YSSLI+G+C++ R+ +A+++   +  + C+P+  +YNTLIN 
Sbjct: 343 EKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLING 402

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSCIL-------------EAAELFRTLHNTKFELD 405
           + K ++V++ + L+ EM   G+  +                   A  +F+ + +     +
Sbjct: 403 FCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPN 462

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
           +  +N L+DGLCK+ +L  A  +F+ L R   EP++ TY +MI G+C  G
Sbjct: 463 ILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAG 512



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 106/249 (42%), Gaps = 31/249 (12%)

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y  ++ +   D+ +D A  LF  M      P ++ +S L+     M + D        +E
Sbjct: 46  YREVLRTGLSDIELDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKME 105

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSC---------IL 388
             G   +  +YN LIN + +  ++  AL+L G+M+ +G  PD    NS          I 
Sbjct: 106 ILGISHNLYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRIS 165

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
           +A  L   +    ++ D   F  L+ GL    +   A  L  ++ + G +P++VTY  ++
Sbjct: 166 DAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVV 225

Query: 449 CGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVK 490
            GLC  G  + A +LL  ME                   K R    A+ L  +M  + V+
Sbjct: 226 NGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVR 285

Query: 491 PDEITVSIL 499
           P+ IT S L
Sbjct: 286 PNVITYSSL 294


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 120/415 (28%), Positives = 209/415 (50%), Gaps = 31/415 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L D    F  M+    +P    +N L+   A K        L E + ++GL P   + N
Sbjct: 23  KLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYN 82

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA-SGLFTKFVA 185
            L+N FCK   + +A      +  K F PDVVT   +I GLC  GK TEA   LF K + 
Sbjct: 83  SLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIE 142

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
             C      N + Y ++I+GLCKD  + +   L  +M  +G  PD   YN+++   C   
Sbjct: 143 RGCS----ANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMG 198

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
              +AK           +F +     G    PDV++Y  ++++L K+   D+A +LF D+
Sbjct: 199 KVSEAK-----------QFFDSMPSRGY--SPDVVAYNGLLDALYKEGKTDEAMKLFKDV 245

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
            ++G +PD V Y+S++ G      +D+A ++F  + + GC P+ ++Y+ +++ + + +KV
Sbjct: 246 IAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKV 305

Query: 366 EEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCL 412
           ++A  +  EM  +G  PD              + + +A ELF T+ +     D+  ++ +
Sbjct: 306 DDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVV 365

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           ++GLCK+ ++  A  LF ++      P+VVT+ +++ GLC  G +++A DLL  M
Sbjct: 366 LNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQM 420



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/430 (26%), Positives = 216/430 (50%), Gaps = 51/430 (11%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+  +  +++  FCK   + D +    ++L    SPD +    LI G   +G+  EA+ L
Sbjct: 6   PNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRL 65

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           + + V+      + P++  Y S+++  CK+  + +   LF  M  +G  PD   Y+++I 
Sbjct: 66  YEEMVSV----GLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIIS 121

Query: 240 VYCCAVNWEDAKGNTSAALEL--HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
             C         G  + ALE+  H+    G       C  + ++Y ++IN LCKD  +++
Sbjct: 122 GLC-------KTGKVTEALEMLFHKMIERG-------CSANTVAYNALINGLCKDENIER 167

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A +L  +M S+G +PD + Y++++ G C MG++ +A++ F S+ S G  PD  +YN L++
Sbjct: 168 AYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLD 227

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPD----NSCIL---------EAAELFRTLHNTKFEL 404
           +  K  K +EA+ L+ ++I+ G  PD    NS +L         EA E+F+ +  +    
Sbjct: 228 ALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAP 287

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           +   ++ ++ G C++ ++  A ++ +++ + G  P+VVTY +++ GLC    ++KA++L 
Sbjct: 288 NGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELF 347

Query: 465 PDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
             M +                  K  +   A  L  +M +R + PD +T +IL + L K 
Sbjct: 348 STMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKA 407

Query: 507 ENCHECMNLL 516
               E  +LL
Sbjct: 408 GKLDEAKDLL 417



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 168/363 (46%), Gaps = 39/363 (10%)

Query: 74  FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
            F+ MI    +    ++N+L+  L   +       L E + + G +PD ++ N +++  C
Sbjct: 136 LFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLC 195

Query: 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
           +M  VS+A      +  + +SPDVV    L+  L  +GK  EA  LF   +A       +
Sbjct: 196 RMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIA----KGYM 251

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P+ + Y SI+ GL +   +++   +F  M   G  P+   Y+ ++  +C A   +DA   
Sbjct: 252 PDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAH-- 309

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
                ++ EE      ++G +  PDV++Y  +++ LCK  LVDKA ELF  M   G  PD
Sbjct: 310 -----KVLEEM----SKIGAV--PDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPD 358

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           +V YS +++G C   ++ DAR LF  +     +PD  ++N L++   K  K++EA  L  
Sbjct: 359 IVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLD 418

Query: 374 EMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
           +M   G  P                      D   +N L++GL K  R   A  L + + 
Sbjct: 419 QMTCSGCAP----------------------DYVAYNTLMNGLRKQGRHIQADRLTQAMK 456

Query: 434 RYG 436
             G
Sbjct: 457 EKG 459



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 125/267 (46%), Gaps = 41/267 (15%)

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
           C P+  ++  ++ S CK   +    +LF  M   GI PD + Y+ LIDGY   GR+D+A 
Sbjct: 4   CSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEAN 63

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
           +L+  + S G  P   +YN+L+N++ K  K++EA+                      ELF
Sbjct: 64  RLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAM----------------------ELF 101

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE-LFKKLPRYGPEPNVVTYTVMICGLCI 453
           +T+    FE D+  ++ ++ GLCK+ ++  A E LF K+   G   N V Y  +I GLC 
Sbjct: 102 KTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCK 161

Query: 454 EGGIEKAYDLLPDMEEK------------------IRECLKAIELLHKMAKRYVKPDEIT 495
           +  IE+AY LL +M  K                  + +  +A +    M  R   PD + 
Sbjct: 162 DENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVA 221

Query: 496 VSILEELLNKDENCHECMNLLPSFLSR 522
            + L + L K+    E M L    +++
Sbjct: 222 YNGLLDALYKEGKTDEAMKLFKDVIAK 248



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 112/263 (42%), Gaps = 44/263 (16%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  PD V+ N L++   K     +A      ++ K + PD VT   ++ GL  +    EA
Sbjct: 214 GYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEA 273

Query: 177 SGLFTKFVAFDCRPN-------------------------------VIPNVICYASIIDG 205
             +F K VA  C PN                                +P+V+ Y  ++DG
Sbjct: 274 EEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDG 333

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
           LCK   V+K   LF  M   G  PD   Y+ ++   C      DA+      +E   + V
Sbjct: 334 LCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIE--RKLV 391

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
                      PDV+++  +++ LCK   +D+AK+L   M   G  PD V Y++L++G  
Sbjct: 392 -----------PDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLR 440

Query: 326 LMGRIDDARKLFVSIESEGCIPD 348
             GR   A +L  +++ +G + D
Sbjct: 441 KQGRHIQADRLTQAMKEKGFLSD 463


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 128/468 (27%), Positives = 222/468 (47%), Gaps = 61/468 (13%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N  S + ++ DA+  F+ M+ M   P + ++++++  L         I L +++   G  
Sbjct: 55  NGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCK 114

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ V  + +++  CK   +++A   L  ++ +  SP+VVT   ++ G C  G+  EA+ L
Sbjct: 115 PNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSL 174

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F + V      NV+P+ + +  ++DGL K+G + + + +F  M  +G+ P+   YN+L+ 
Sbjct: 175 FKQMV----ERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMD 230

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            YC     ++A+       +L    V         C P V SY  +I   CK   +D+AK
Sbjct: 231 GYCSQSQMDEAQ-------KLFNIMVRKG------CAPSVRSYNILIKGHCKSGRIDEAK 277

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            L  +M  + + PD V YS+L+ G+C  GR  DA+KL   + S G +PD  +Y+ +++  
Sbjct: 278 GLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGL 337

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            K   ++EA                       EL + +  +K E ++ ++  L+ G+C  
Sbjct: 338 CKQGHLDEAF----------------------ELLKAMQESKIEPNIFIYTILIQGMCNF 375

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL---- 475
            +L +A ELF  L   G +P+VVTYTVMI GL   G   +A +L  DM   +  CL    
Sbjct: 376 GKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDM--AVHGCLPNSC 433

Query: 476 ----------------KAIELLHKMAKRYVKPDEITVSILEELLNKDE 507
                            A  L+ +M  R    D  T  +L +L ++DE
Sbjct: 434 TYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTFQMLSDLESRDE 481



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 110/365 (30%), Positives = 187/365 (51%), Gaps = 30/365 (8%)

Query: 116 IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
           +GL P+ V+ + L+N       + DA      +++  + PDV+T   +I GLC  G  T 
Sbjct: 41  LGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTM 100

Query: 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
           A  L  K     C+    PNV+ Y++IID LCKD  + +      +M  RGI P+   Y+
Sbjct: 101 AIQLLKKMEEKGCK----PNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYS 156

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           S++  +C         G ++ A  L ++ V  N        PD +++  +++ L K+ ++
Sbjct: 157 SILHGFC-------NLGRSNEATSLFKQMVERN------VMPDTVTFNILVDGLSKEGMI 203

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
            +A+ +F  M  +G+ P+V  Y++L+DGYC   ++D+A+KLF  +  +GC P   SYN L
Sbjct: 204 LEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNIL 263

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDN---SCIL----------EAAELFRTLHNTKF 402
           I  + K  +++EA  L  EM    + PD    S ++          +A +L   + +   
Sbjct: 264 IKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGL 323

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
             DL  ++ ++DGLCK   L  A+EL K +     EPN+  YT++I G+C  G +E A +
Sbjct: 324 LPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARE 383

Query: 463 LLPDM 467
           L  ++
Sbjct: 384 LFSNL 388



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 115/395 (29%), Positives = 185/395 (46%), Gaps = 64/395 (16%)

Query: 155 PDVVTLGCLIRGLCM--QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFV 212
           PDV TL  LI   C      F  A  +         +PN +     ++++++GL     +
Sbjct: 8   PDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVT----FSTLLNGLSSKAKI 63

Query: 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
                LF +M   G  PD   Y+++I   C         G+T+ A++L ++      E G
Sbjct: 64  IDAVKLFDEMVKMGYEPDVITYSTIINGLC-------KMGSTTMAIQLLKKM----EEKG 112

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
             C P+V+ Y +II+SLCKD L+ +A E   +M +RGI P+VV YSS++ G+C +GR ++
Sbjct: 113 --CKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNE 170

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392
           A  LF  +     +PDT ++N L++  SK   + EA  ++  MI  GV P          
Sbjct: 171 ATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEP---------- 220

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
                       ++  +N L+DG C   ++  A +LF  + R G  P+V +Y ++I G C
Sbjct: 221 ------------NVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHC 268

Query: 453 IEGGIEKAYDLLPDMEEKI--------RECLK----------AIELLHKMAKRYVKPDEI 494
             G I++A  LL +M  K            +K          A +LL +M    + PD +
Sbjct: 269 KSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLM 328

Query: 495 TVSILEELLNKDENCHECMNLLPSFLSRNQEESKL 529
           T SI+ + L K  +  E   LL +      +ESK+
Sbjct: 329 TYSIVLDGLCKQGHLDEAFELLKAM-----QESKI 358


>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 539

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 148/480 (30%), Positives = 230/480 (47%), Gaps = 92/480 (19%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL-PDFVSLN 126
            ND +  F++++H  P P +  FN LL  L   K Y   + L   L +   + P  ++ +
Sbjct: 50  FNDTVSSFHHILHHHPPPPIQHFNKLLSTLIKLKRYNAVVSLYTILQSKPTIKPSLITFS 109

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV-- 184
           IL+N F ++  +  AF  LG IL+  F  DV  L  L++GLC++G+  EA  L  ++V  
Sbjct: 110 ILINAFAQLGQMGFAFSLLGNILKMGFQIDVRILTTLMKGLCLKGRVLEAVSLLHEYVDR 169

Query: 185 --AFD--CRPNVI-------------------------PNVICYASIIDGLCKDGFVNKV 215
              FD  C   +I                         PN+I Y ++IDGLCK G V++ 
Sbjct: 170 GFRFDEVCYGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEA 229

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
             L  +M   GI  D + YNS+I  +C         G   AA++L +E V   G++    
Sbjct: 230 CGLCTEMVENGIELDVYSYNSMIHGFCSV-------GRFQAAVKLLDEMVV-RGKV---- 277

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
           +PDV ++  +I+ LCK   V +A  +   M  RG  PD+V Y++L++GYCL G + +A++
Sbjct: 278 YPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQ 337

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---SCILE--- 389
           +F  +     +P+  SY TLIN Y K+  V+EA+ L  EM +  + PD    +C+L+   
Sbjct: 338 VFDKMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLS 397

Query: 390 ------------------------------------------AAELFRTLHNTKFELDLT 407
                                                     A  LF+ +       ++ 
Sbjct: 398 KSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIR 457

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            +N L+DGLCKS RL+ A E+F+ L   G +PN+ TY +MI GLC EG +++A  LL  M
Sbjct: 458 TYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEALLYKM 517



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 152/296 (51%), Gaps = 18/296 (6%)

Query: 89  SFNSLL-GALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGR 147
           S+NS++ G  +  ++      L E +    + PD  + NIL++  CK+  VS+A+  +  
Sbjct: 247 SYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAV 306

Query: 148 ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207
           ++++ + PD+V+   L+ G C+ G   EA  +F K V        +PNVI Y ++I+G C
Sbjct: 307 MIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMV----ERTALPNVISYCTLINGYC 362

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
           K   V++  VL  +M  + + PD   YN       C ++     G +    +L E  +  
Sbjct: 363 KVRMVDEAMVLLTEMHNKNLVPDTVTYN-------CLLDGLSKSGRSLYEWDLVEA-MRA 414

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
           +G+       D+++Y  +++   K    DKA  LF  +   GI P++  Y+ L+DG C  
Sbjct: 415 SGQ-----PADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGLCKS 469

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           GR+  A+++F  + ++GC P+  +YN +I+   K   ++EA +L  +M++    P+
Sbjct: 470 GRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEALLYKMVNNNYLPN 525



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 158/352 (44%), Gaps = 52/352 (14%)

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
           K    + + + +     +P + P++I ++ +I+   + G +     L  ++   G   D 
Sbjct: 81  KLKRYNAVVSLYTILQSKPTIKPSLITFSILINAFAQLGQMGFAFSLLGNILKMGFQIDV 140

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
            +  +L++  C        KG    A+ L  E+V+       +C      Y +IIN LCK
Sbjct: 141 RILTTLMKGLCL-------KGRVLEAVSLLHEYVDRGFRFDEVC------YGTIINGLCK 187

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
                 A ++F  MK   + P++++Y+++IDG C  G +D+A  L   +   G   D  S
Sbjct: 188 IGKTRDAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYS 247

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNC 411
           YN++I+ +  + + + A+ L  EM+  G                     K   D+  FN 
Sbjct: 248 YNSMIHGFCSVGRFQAAVKLLDEMVVRG---------------------KVYPDVYTFNI 286

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE-- 469
           L+DGLCK  R+  A+ +   + + G +P++V+Y  ++ G C+ G + +A  +   M E  
Sbjct: 287 LIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERT 346

Query: 470 ----------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505
                           K+R   +A+ LL +M  + + PD +T + L + L+K
Sbjct: 347 ALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSK 398


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 141/548 (25%), Positives = 243/548 (44%), Gaps = 110/548 (20%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A  F   M++ +  P   ++N+L+   +    +   + + + +    +LPD V+L++
Sbjct: 270 MDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSM 329

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           LM   CK   + +A      +  K  +PDV +   ++ G   +G   + + LF   +   
Sbjct: 330 LMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDG 389

Query: 188 CRPN-------------------------------VIPNVICYASIIDGLCKDGFVNKVR 216
             P+                               V P+V+ Y ++I  LC+ G ++   
Sbjct: 390 IAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAM 449

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
             F  M  +G+ PD + YN LI+ +C         G+   A EL  E +N NG      H
Sbjct: 450 EKFNQMIDQGVAPDKYAYNCLIQGFC-------THGSLLKAKELISEIMN-NG-----MH 496

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
            D++ + SIIN+LCK   V  A+ +F    + G+ PD VVYS L+DGYCL+G+++ A ++
Sbjct: 497 LDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRV 556

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------- 383
           F ++ S G  P+   Y TL+N Y KI +++E LSL+ EM+  G++P              
Sbjct: 557 FDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQ 616

Query: 384 -----------------------------------NSCILEAAELFRTLHNTKFELDLTV 408
                                              N C  EA  LF+ L     ++++  
Sbjct: 617 AGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIIT 676

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
            N ++DG+ ++ R+  A +LF  + R    P+VVTY++MI  L  EG +E+A D+   M+
Sbjct: 677 LNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQ 736

Query: 469 EK------------IRECLKAIEL------LHKMAKRYVKPDEITVSILEELLNKDENCH 510
                         +RE LK  E+      L K+ +R    + +T  +L +L +    C 
Sbjct: 737 NAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVDLFSSKGTCR 796

Query: 511 ECMNLLPS 518
           E +  LP+
Sbjct: 797 EHIRFLPA 804



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 123/478 (25%), Positives = 199/478 (41%), Gaps = 103/478 (21%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAF-VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
           GL  + +  N L+  FC+     +A  + L R       PDV +   L++ LC QGK  +
Sbjct: 141 GLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQ 200

Query: 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
           A  L       +      PNV+ Y ++IDG  K+G VNK   LF +M  RGI PD   YN
Sbjct: 201 ADDLLRMMA--EGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYN 258

Query: 236 SLIRVYCCAV--------------------NWE--------DAKGNTSAALELHEEFVNG 267
           S++   C A                     NW          + G    A+ + +E    
Sbjct: 259 SVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRH 318

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY--- 324
           +        PDV++   ++ SLCK   + +A+++F  M  +G  PDV  Y+ +++GY   
Sbjct: 319 S------ILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATK 372

Query: 325 -CLM-------------------------------GRIDDARKLFVSIESEGCIPDTSSY 352
            CL+                               G +D A  +F  +   G  PD  +Y
Sbjct: 373 GCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTY 432

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHN 399
            T+I +  +I K+++A+  + +MI  GV PD             +  +L+A EL   + N
Sbjct: 433 RTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMN 492

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
               LD+  F+ +++ LCK  R+  A  +F      G  P+ V Y++++ G C+ G +EK
Sbjct: 493 NGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEK 552

Query: 460 AYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           A  +   M                    KI    + + L  +M +R +KP  I  SI+
Sbjct: 553 ALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSII 610



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 51/224 (22%)

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE-GCIPDTSS----- 351
           A   F  +   G+  ++++ + L++G+C   R D+A  + +    E GC+PD  S     
Sbjct: 130 ALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILL 189

Query: 352 --------------------------------YNTLINSYSKIEKVEEALSLYGEMISMG 379
                                           YNT+I+ + K   V +A  L+ EM+  G
Sbjct: 190 KSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRG 249

Query: 380 VRPD----NSCI--------LEAAELF-RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           + PD    NS +        ++ AE F R + N +   +   +N L+ G   + + + A 
Sbjct: 250 IPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAV 309

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            +FK++ R+   P+VVT ++++  LC  G I++A D+   M  K
Sbjct: 310 RVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMK 353



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 43/170 (25%)

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406
           P + +Y  L++  ++  + E AL+ +G+++  G+R                      +++
Sbjct: 109 PTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLR----------------------VNI 146

Query: 407 TVFNCLVDGLCKSWRLRSAWE-LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
            + N L++G C++ R   A + L  + P  G  P+V +Y++++  LC +G   +A DLL 
Sbjct: 147 IIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLR 206

Query: 466 DMEEKIRECL--------------------KAIELLHKMAKRYVKPDEIT 495
            M E    C                     KA +L  +M +R + PD +T
Sbjct: 207 MMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVT 256


>gi|356502394|ref|XP_003520004.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 525

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 129/469 (27%), Positives = 208/469 (44%), Gaps = 93/469 (19%)

Query: 81  MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSD 140
           M P P    F +L G +   K+Y   I L +   ++G+ PD  +L I++NC C +     
Sbjct: 1   MNPLPPDKDFATLFGVIVKMKHYATAISLIKHTYSLGVKPDVHTLTIVINCLCHLKHTVF 60

Query: 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQG----------------------------- 171
            F  LG + +    P VVT   LI GLC +G                             
Sbjct: 61  GFSVLGAMFKIGVEPTVVTFATLINGLCAEGNVGAAARFADSLEDMGYESNSYTHGTIIN 120

Query: 172 ---KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
              K  + +G  +     + R      +I Y++I+D LCKDG +      F  M  +GI 
Sbjct: 121 GLCKVGDTAGAISYLEKIEGRNRGFDLLIAYSTIMDSLCKDGMLCLALNFFSGMTCKGIQ 180

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           PD   YNSLI   C    W +A              +      G++  P+V ++  ++++
Sbjct: 181 PDLVAYNSLIHGLCSFGRWNEAT-----------TLLGNMMRKGIM--PNVQTFNVLVDN 227

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
            CK+  + +AK +   M   G+ PDVV Y+S+I G+CL+ +++DA K+F  +  +G +P+
Sbjct: 228 FCKEGKISRAKTIMCFMVHVGVEPDVVTYNSVISGHCLLSQMNDAVKVFELMIHKGLLPN 287

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGV------------------RPD------- 383
             +Y++LI+ + K   + +A+ +  EM++ G+                  RP+       
Sbjct: 288 VVTYSSLIHGWCKTRNINKAIFVLDEMVNNGLNLDVVTWSTLIGGFCKAGRPEAAIELFC 347

Query: 384 -----------NSCIL------------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
                       +C +            EA  LFR +     EL++  +N ++DG+C   
Sbjct: 348 TMHEHHQLPNLQTCAIILDGLFKCQFHSEAISLFRKMEKMNLELNIVTYNIVLDGMCSFG 407

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           +   A ELF  LP  G + +VV YT MI GLC EG ++ A DLL  MEE
Sbjct: 408 KFNDARELFSCLPSKGIQIDVVAYTTMIKGLCKEGLLDDAEDLLMKMEE 456



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 132/308 (42%), Gaps = 57/308 (18%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++NDA+  F  MIH                                    GLLP+ V+ +
Sbjct: 268 QMNDAVKVFELMIHK-----------------------------------GLLPNVVTYS 292

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ +CK   ++ A   L  ++    + DVVT   LI G C  G+   A  LF      
Sbjct: 293 SLIHGWCKTRNINKAIFVLDEMVNNGLNLDVVTWSTLIGGFCKAGRPEAAIELFCTM--- 349

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
               + +PN+   A I+DGL K  F ++   LF  M+   +  +   YN ++   C    
Sbjct: 350 -HEHHQLPNLQTCAIILDGLFKCQFHSEAISLFRKMEKMNLELNIVTYNIVLDGMCSFGK 408

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
           + DA+       EL     +   ++ V+      +Y ++I  LCK+ L+D A++L + M+
Sbjct: 409 FNDAR-------ELFSCLPSKGIQIDVV------AYTTMIKGLCKEGLLDDAEDLLMKME 455

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDAR--KLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
             G  P+   Y+ L+ G  L+ R D +R  K  + ++ +G   D ++   LI SY    K
Sbjct: 456 ENGCPPNEFTYNVLVRG--LLQRYDISRSTKYLMLMKGKGLSADATTTELLI-SYFSANK 512

Query: 365 VEEALSLY 372
              AL ++
Sbjct: 513 ENSALQVF 520



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 6/180 (3%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G  E   A+  F  M      P + +   +L  L   +++   I L  ++  + L  +
Sbjct: 335 KAGRPE--AAIELFCTMHEHHQLPNLQTCAIILDGLFKCQFHSEAISLFRKMEKMNLELN 392

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+ NI+++  C     +DA      +  K    DVV    +I+GLC +G   +A  L  
Sbjct: 393 IVTYNIVLDGMCSFGKFNDARELFSCLPSKGIQIDVVAYTTMIKGLCKEGLLDDAEDLLM 452

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           K     C PN       Y  ++ GL +   +++     + MKG+G+  DA     LI  +
Sbjct: 453 KMEENGCPPNEFT----YNVLVRGLLQRYDISRSTKYLMLMKGKGLSADATTTELLISYF 508


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 137/435 (31%), Positives = 209/435 (48%), Gaps = 59/435 (13%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ PD    N +++C  K   + +A   L  I  +   PD VT G  I G    GK TEA
Sbjct: 414 GVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEA 473

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD-----A 231
           +  F + +       ++PN   Y  +I+G  K G + +   +F  +   G+ PD     A
Sbjct: 474 AKYFDEMLDH----GLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSA 529

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
           F++  L              G    AL++  E      E G++  PDV +Y S+I+  CK
Sbjct: 530 FIHGLL------------KNGRVQEALKVFSEL----KEKGLV--PDVFTYSSLISGFCK 571

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
              V+KA EL  +M  +GI P++ +Y++L+DG C  G I  ARKLF  +  +G  PD+ +
Sbjct: 572 QGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVT 631

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------NSCILE-----AAELFRTLH 398
           Y+T+I+ Y K E V EA SL+ EM S GV+P         + C  E     A  LFR + 
Sbjct: 632 YSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREML 691

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
              F   L+ FN L+DG CKS +++ A +LF+++      P+ VTYT +I   C  G +E
Sbjct: 692 QKGFATTLS-FNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKME 750

Query: 459 KAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILE 500
           +A  L  +M+E                  K+ +  +   L  KM  + VKPDE+T  ++ 
Sbjct: 751 EANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVI 810

Query: 501 ELLNKDENCHECMNL 515
               K++N  E   L
Sbjct: 811 YAHCKEDNLVEAFKL 825



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/441 (24%), Positives = 202/441 (45%), Gaps = 54/441 (12%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           SK+G+  + +A  +F+ M+     P  P +  L+         +  + +   L+ +G+LP
Sbjct: 465 SKTGK--MTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLP 522

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           D  + +  ++   K   V +A      +  K   PDV T   LI G C QG+  +A  L 
Sbjct: 523 DVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELH 582

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            +     C   + PN+  Y +++DGLCK G + + R LF  M  +G+ PD+  Y+++I  
Sbjct: 583 DEM----CLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDG 638

Query: 241 YCCAVNWEDA----------------------------KGNTSAALELHEEFVNGNGELG 272
           YC + N  +A                            +G+   A+ L  E +       
Sbjct: 639 YCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG---- 694

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
                  LS+ ++I+  CK   + +A +LF +M ++ I+PD V Y+++ID +C  G++++
Sbjct: 695 ---FATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEE 751

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC------ 386
           A  LF  ++    I DT +Y +L+  Y+K+ +  E  +L+ +M++ GV+PD         
Sbjct: 752 ANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIY 811

Query: 387 -------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
                  ++EA +L   +         T+ + L+  LCK   L  A +L  ++   G +P
Sbjct: 812 AHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKP 871

Query: 440 NVVTYTVMICGLCIEGGIEKA 460
           ++   + ++      G +++A
Sbjct: 872 SLAACSTLVRSFHEAGKMDEA 892



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 131/480 (27%), Positives = 201/480 (41%), Gaps = 97/480 (20%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL+P+  +  I+    C+   +++A +    + +    PD      LI G   +G   E 
Sbjct: 204 GLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEV 263

Query: 177 SGLFTKFVAFDCRPNVIP-NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
             L  K V   C    IP N+I Y  +I GLCK G + K   +   M   G  P++  + 
Sbjct: 264 --LRIKDVMVSCG---IPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFC 318

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
            LI  YC        + N   ALEL +E    N        P  +SY ++IN LC    +
Sbjct: 319 LLIEGYC-------REHNMGRALELLDEMEKRN------LVPSAVSYGAMINGLCHCKDL 365

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
             A +L   M   G+ P+VVVYS+LI GY   GRI++AR+L   +   G  PD   YN +
Sbjct: 366 SLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAI 425

Query: 356 IN-----------------------------------SYSKIEKVEEALSLYGEMISMGV 380
           I+                                    YSK  K+ EA   + EM+  G+
Sbjct: 426 ISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGL 485

Query: 381 RPDNSC-------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
            P+N               ++EA  +FR LH      D+   +  + GL K+ R++ A +
Sbjct: 486 MPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALK 545

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAI--------- 478
           +F +L   G  P+V TY+ +I G C +G +EKA++L  +M      CLK I         
Sbjct: 546 VFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEM------CLKGIAPNIFIYNA 599

Query: 479 ---------------ELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
                          +L   M ++ ++PD +T S + +   K EN  E  +L     S+ 
Sbjct: 600 LVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKG 659



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 152/328 (46%), Gaps = 20/328 (6%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           KSG+++   A   F+ M      P   ++++++      +       L   + + G+ P 
Sbjct: 606 KSGDIQ--RARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPH 663

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
               N L++  CK   +  A      +L+K F+   ++   LI G C   K  EAS LF 
Sbjct: 664 SFVYNALVHGCCKEGDMEKAMNLFREMLQKGFAT-TLSFNTLIDGYCKSCKIQEASQLFQ 722

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           + +A      ++P+ + Y ++ID  CK G + +  +LF +M+ R +  D   Y SL+  Y
Sbjct: 723 EMIA----KQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGY 778

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
                  +  G +S    L E+ V           PD ++Y  +I + CK+  + +A +L
Sbjct: 779 -------NKLGQSSEVFALFEKMVAKG------VKPDEVTYGLVIYAHCKEDNLVEAFKL 825

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
             ++  +G++    ++  LI   C    + +A KL   +   G  P  ++ +TL+ S+ +
Sbjct: 826 RDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHE 885

Query: 362 IEKVEEALSLYGEMISMGVRPDNSCILE 389
             K++EA  ++  + S+G+ PD + +++
Sbjct: 886 AGKMDEATRVFEGVKSLGLVPDTTTLID 913



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 123/254 (48%), Gaps = 17/254 (6%)

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           +S N L++ +CK   + +A      ++ K   PD VT   +I   C  GK  EA+ LF +
Sbjct: 699 LSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKE 758

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
                   N+I + + Y S++ G  K G  ++V  LF  M  +G+ PD   Y  +I  +C
Sbjct: 759 MQ----ERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHC 814

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
                   + N   A +L +E V G G L      D+L     I +LCK   + +A +L 
Sbjct: 815 -------KEDNLVEAFKLRDEVV-GKGMLTKGTIHDLL-----ITALCKREDLTEASKLL 861

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
            +M   G+ P +   S+L+  +   G++D+A ++F  ++S G +PDT++   L+N     
Sbjct: 862 DEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLND 921

Query: 363 EKVEEALSLYGEMI 376
              E+A +L  +++
Sbjct: 922 TDSEDARNLIKQLV 935



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 83/166 (50%), Gaps = 22/166 (13%)

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M  +G++P+   Y+ +  G C   R+++A+  F  ++  G  PD ++ + LI+ + +   
Sbjct: 200 MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 259

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
           ++E L +   M+S G+                       ++L  +N L+ GLCK  ++  
Sbjct: 260 IDEVLRIKDVMVSCGI----------------------PINLITYNVLIHGLCKFGKMEK 297

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           A E+ K +   G +PN  T+ ++I G C E  + +A +LL +ME++
Sbjct: 298 AAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKR 343


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 138/514 (26%), Positives = 231/514 (44%), Gaps = 88/514 (17%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L DA+  F  M+  +P P +  F  L+G +         I L  ++    +  +  S  I
Sbjct: 59  LEDAIDLFGDMVRSRPLPSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRRVPCNAYSFTI 118

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           LM CFC    +  A    G+I +  F P VVT   L+ GLC++ + +EA  LF +     
Sbjct: 119 LMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDLFHQM---- 174

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC----- 242
           C+PNV+     + ++++GLC++G V +   L   M   G+ P+   Y +++   C     
Sbjct: 175 CKPNVVT----FTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDT 230

Query: 243 -----------------------------CAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
                                        C +N   + G  S A +L +E +        
Sbjct: 231 VSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKK---- 286

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
              PDV++Y ++IN+  K+    +A+EL+ +M  RGIIP  + YSS+IDG+C   R+D A
Sbjct: 287 -ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAA 345

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC------- 386
             +F  + ++GC PD  ++NTLI  Y + ++V++ + L  EM   G+  +          
Sbjct: 346 EHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHG 405

Query: 387 ------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL-------- 432
                 +  A +L + + ++    ++   N L+DGLC + +L+ A E+FK +        
Sbjct: 406 FCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDID 465

Query: 433 ---PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYV 489
              P  G EP+V TY ++I GL  EG                 + L+A EL  +M  R +
Sbjct: 466 ASHPFNGVEPDVQTYNILISGLINEG-----------------KFLEAEELYEEMPHRGI 508

Query: 490 KPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
            PD IT + +   L K     E   +  S  S++
Sbjct: 509 VPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKS 542



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 124/519 (23%), Positives = 210/519 (40%), Gaps = 144/519 (27%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  +++AL  F    H    P + +F +L+  L  +   V  + L +R+   GL P+ ++
Sbjct: 161 EDRISEALDLF----HQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQIT 216

Query: 125 LNILMNCFCKMIGVSDA-------------------------------FVALGR------ 147
              +++  CKM     A                               F + GR      
Sbjct: 217 YGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQ 276

Query: 148 -----ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202
                + RK  SPDVVT   LI     +GKF EA  L+ + +       +IP+ I Y+S+
Sbjct: 277 LLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLP----RGIIPSTITYSSM 332

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA------------ 250
           IDG CK   ++    +F  M  +G  PD   +N+LI  YC A   +D             
Sbjct: 333 IDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGL 392

Query: 251 ----------------KGNTSAALELHEEFVNG------------------NGEL----- 271
                            G+ +AA +L +E V+                   NG+L     
Sbjct: 393 VANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALE 452

Query: 272 -------------------GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
                              GV   PDV +Y  +I+ L  +    +A+EL+ +M  RGI+P
Sbjct: 453 MFKAMQKSKMDIDASHPFNGV--EPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVP 510

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
           D + Y+S+I G C   R+D+A ++F S+ S+   P+  ++ TLIN Y K  +V++ L L+
Sbjct: 511 DTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELF 570

Query: 373 GEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
            EM   G+  +                         +  L+ G  K   +  A ++F+++
Sbjct: 571 CEMGRRGIVANA----------------------ITYITLIHGFRKVGNINGALDIFQEM 608

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI 471
              G  P+ +T   M+ GL  +  +++A  +L D++  +
Sbjct: 609 MASGVYPDTITIRNMLTGLWSKEELKRAVAMLEDLQMSV 647



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 33/192 (17%)

Query: 355 LINSYSKIEKVEEALSLYGEMIS-------------MGVRPDNSCILEAAELFRTLHNTK 401
           L + + +I+ +E+A+ L+G+M+              MGV      +     L R +   +
Sbjct: 49  LRSGFHEIKGLEDAIDLFGDMVRSRPLPSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRR 108

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
              +   F  L+   C   +L  A   F K+ + G  P VVT++ ++ GLC+E  I +A 
Sbjct: 109 VPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEAL 168

Query: 462 DLLPDM-----------------EEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLN 504
           DL   M                 E ++ E   A+ LL +M +  ++P++IT   + + + 
Sbjct: 169 DLFHQMCKPNVVTFTTLMNGLCREGRVVE---AVALLDRMLEDGLQPNQITYGTIVDGMC 225

Query: 505 KDENCHECMNLL 516
           K  +    +NLL
Sbjct: 226 KMGDTVSALNLL 237


>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 477

 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 133/439 (30%), Positives = 207/439 (47%), Gaps = 57/439 (12%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           A+  FN M+ M+P P    F+++L +L   K+Y+  I L ++  + G+ P+  +LNIL+N
Sbjct: 77  AVASFNRMLLMRPPPPTFHFDNILSSLVKNKHYLTVISLFKQFQSNGVTPNLCTLNILIN 136

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
           CFC +  ++ AF     IL++ + PD +TL  LI+GLC  G+   A     K VA     
Sbjct: 137 CFCHLAHITFAFSVFANILKRGYHPDAITLNTLIKGLCFCGEIKRALYFHDKVVA----Q 192

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
               + + Y ++I+GLCK G    V  L   ++G  + PD  +Y ++I   C        
Sbjct: 193 GFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLC-------K 245

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
                 A +L+ E +      G+   P+V +Y ++I   C    + +A  L  +MK + I
Sbjct: 246 NKRVGDACDLYSEMIVK----GI--SPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNI 299

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
            PDV  ++ LID     G+ID+A  LF  ++ +   P+  +Y +LI+   K   +E A++
Sbjct: 300 NPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIA 359

Query: 371 LYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
           L  +M   G++P                      D+  +  L+D LCK  RL +A + F+
Sbjct: 360 LCKKMKEQGIQP----------------------DVYSYTILLDALCKGGRLENAKQFFQ 397

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVK 490
            L   G   NV TY VMI GLC  G      DL   ME K   C+               
Sbjct: 398 HLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGK--GCM--------------- 440

Query: 491 PDEITV-SILEELLNKDEN 508
           PD IT  +I+  L  KDEN
Sbjct: 441 PDAITFKTIICALFEKDEN 459



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 104/228 (45%), Gaps = 17/228 (7%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ P+  + N L+  FC M  + +AF  L  +  K  +PDV T   LI  L  +GK  EA
Sbjct: 263 GISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEA 322

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             LF +        N+ PN++ Y S+IDGLCK+  + +   L   MK +GI PD + Y  
Sbjct: 323 ISLFEEMK----HKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTI 378

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           L+   C     E+AK      L      V G        H +V +Y  +IN LCK  L  
Sbjct: 379 LLDALCKGGRLENAKQFFQHLL------VKGY-------HLNVRTYNVMINGLCKAGLFG 425

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
              +L   M+ +G +PD + + ++I         D A K    + + G
Sbjct: 426 DVMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKFLREMIARG 473



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 4/163 (2%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E ++++A+  F  M H    P + ++ SL+  L    +    I L +++   G+ PD  S
Sbjct: 316 EGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYS 375

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
             IL++  CK   + +A      +L K +  +V T   +I GLC  G F +   L +K  
Sbjct: 376 YTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKME 435

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI 227
              C    +P+ I + +II  L +    +K      +M  RG+
Sbjct: 436 GKGC----MPDAITFKTIICALFEKDENDKAEKFLREMIARGL 474


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 141/494 (28%), Positives = 216/494 (43%), Gaps = 75/494 (15%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
            P + ++  L+ AL       +   + E +   G  P+ V+ N L+N FCK+  + +A V
Sbjct: 233 APSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVV 292

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI---------- 193
              ++L    SPDV T   LI G C Q +  + + L  + V + C PN I          
Sbjct: 293 LFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLV 352

Query: 194 ---------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
                                P+   +  +ID  CK G ++    LF  M  RG  PD +
Sbjct: 353 KSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIY 412

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            YN +I   C A   +DA+       +L E            C PDV++Y SI++ LCK 
Sbjct: 413 TYNIMISGACRANRIDDAR-------QLLERMTEAG------CPPDVVTYNSIVSGLCKA 459

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             VD+A E++  +++ G   DVV  S+LIDG C   R+DDA KL   +E  G  PD  +Y
Sbjct: 460 SQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAY 519

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC----ILEAAELFRTLHN 399
             LI+ + K ++++++L+ + EM+  G  P         D  C    + +   L +T+  
Sbjct: 520 TILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLE 579

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
                D  V+  ++DGLCKS     A+EL+K + + G  P VVTY V++  LC    +++
Sbjct: 580 RGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDE 639

Query: 460 AYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEE 501
           A  LL  ME                   K  E  KA  L   M  R   P     S+L  
Sbjct: 640 AIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLT 699

Query: 502 LLNKDENCHECMNL 515
            L  +E   + M +
Sbjct: 700 KLVAEEKMDQAMEI 713



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 134/517 (25%), Positives = 218/517 (42%), Gaps = 87/517 (16%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSF--NSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           +L+ A+ FF++    QP      F  N LL A   KK       L +        PD ++
Sbjct: 111 DLDKAVKFFDWCTG-QPGYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSIT 169

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            + L+N FCK      A+  L  + ++   P       +I+GLC  G+   A   +    
Sbjct: 170 YSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYR--- 226

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
             D + N  P+VI Y  ++D LCK   ++   ++  DM   G  P+   YN+LI  +C  
Sbjct: 227 --DMQRNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFC-- 282

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                  GN   A+ L  + +  +      C PDV +Y  +I+  CK        +L  +
Sbjct: 283 -----KLGNMDEAVVLFNQMLENS------CSPDVFTYNILIDGYCKQERPQDGAKLLQE 331

Query: 305 MKSRGIIPDVVVYSSL-----------------------------------IDGYCLMGR 329
           M   G  P+ + Y++L                                   ID +C +G+
Sbjct: 332 MVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQ 391

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------ 383
           +D A +LF  +   GC+PD  +YN +I+   +  ++++A  L   M   G  PD      
Sbjct: 392 LDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNS 451

Query: 384 -------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
                   S + EA E++  L N  + LD+   + L+DGLCKS RL  A +L +++ R G
Sbjct: 452 IVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNG 511

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK------------IRECLKAIE----- 479
             P+VV YT++I G C    ++K+     +M +K            I +  K+       
Sbjct: 512 SAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGC 571

Query: 480 -LLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
            LL  M +R V PD I  + + + L K ++  E   L
Sbjct: 572 MLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYEL 608



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 157/335 (46%), Gaps = 24/335 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            ++DA      M      P + ++NS++  L           + E L   G   D V+ +
Sbjct: 426 RIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCS 485

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++  CK   + DA   L  + R   +PDVV    LI G C   +  ++   F++ +  
Sbjct: 486 TLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDK 545

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C    +P VI Y+ +ID LCK   V    +L   M  RG+ PDA VY S+I   C + +
Sbjct: 546 GC----VPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDS 601

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
           +++A        EL++  +   G     C P V++Y  +++ LCK   +D+A  L   M+
Sbjct: 602 YDEA-------YELYK-LMKQTG-----CAPTVVTYNVLVDKLCKVSRLDEAIHLLEVME 648

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           S G +PD V Y+S+ DG+      D A +LF +++S GC P    Y+ L+      EK++
Sbjct: 649 SDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKLVAEEKMD 708

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK 401
           +A+ ++ E +  G   D        E+ RTL   K
Sbjct: 709 QAMEIWEEALEAGADVD-------PEISRTLQQNK 736


>gi|356529499|ref|XP_003533328.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 127/438 (28%), Positives = 213/438 (48%), Gaps = 74/438 (16%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++DA+  FN M+ M+ TP +  FN +L + A  K+Y + + LS RL   G+ PD  +LNI
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHY-STVSLSHRLELKGIQPDLFTLNI 98

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+NCFC M  ++  F  L +IL++ + P  VTL  LI+GLC++G+  +A     K +A  
Sbjct: 99  LINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 158

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
            + N +                               P+V+ Y++IID LCK   V++  
Sbjct: 159 FQLNQVGYGTLINGVCKIGDTRAAIKLLKKIDGRLTKPDVVMYSTIIDALCKYQLVSEAY 218

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            LF +M  +GI  D   YN+LI  +C     ++A G  +  +            L  I +
Sbjct: 219 GLFSEMTVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNVMV------------LKTI-N 265

Query: 277 PDVLSYCSIINSLCKDVLVDKAK-------ELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
           PDV +Y  ++++LCK+  V +AK       +L  +M+ RG   DV+ YSSLIDG C  G 
Sbjct: 266 PDVYTYTILVDALCKEGKVKEAKRRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGH 325

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE 389
           +D A  LF  ++ +G  P+  ++  L++   K  ++++A  ++ ++++ G          
Sbjct: 326 LDRAIALFNKMKDQGIRPNMFTFTILLDGLWKGGRLKDAQEVFQDLLTKG---------- 375

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
                       + L++  +N +++G CK   L  A  +  K+   G  PN  T+  +I 
Sbjct: 376 ------------YHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIII 423

Query: 450 GLCIEGGIEKAYDLLPDM 467
            L  +   +KA  LL  M
Sbjct: 424 ALFKKDENDKAEKLLRQM 441



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 122/265 (46%), Gaps = 16/265 (6%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P +  +++++ AL   +       L   +   G+  D V+ N L+  FC +  + +A   
Sbjct: 196 PDVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYNTLIYGFCIVGKLKEAIGL 255

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF--DCRPNVIP-NVICYAS 201
           L  ++ K  +PDV T   L+  LC +GK  EA    +       + R    P +VI Y+S
Sbjct: 256 LNVMVLKTINPDVYTYTILVDALCKEGKVKEAKRRISYVWDLIDEMRDRGQPADVITYSS 315

Query: 202 IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261
           +IDGLCK+G +++   LF  MK +GI P+ F +  L+        W+   G    A E+ 
Sbjct: 316 LIDGLCKNGHLDRAIALFNKMKDQGIRPNMFTFTILLDGL-----WKG--GRLKDAQEVF 368

Query: 262 EEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
           ++ +          H +V +Y  +IN  CK  L+++A  +   M+  G IP+   + ++I
Sbjct: 369 QDLLTKG------YHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETII 422

Query: 322 DGYCLMGRIDDARKLFVSIESEGCI 346
                    D A KL   + + G +
Sbjct: 423 IALFKKDENDKAEKLLRQMIARGLL 447


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 160/620 (25%), Positives = 268/620 (43%), Gaps = 122/620 (19%)

Query: 3   SSSPATSRTAFKVKPSSSLRNSKKPISLNSENEPSSLHSNSVSTV------------EEK 50
           SS+P   + A +   SSSL ++  P S   +   S  H   V +             E  
Sbjct: 4   SSAPRLPKPALRAASSSSL-HTPNPRS-RRQRATSEQHDQHVDSKWRRQPRAPPRRGEGP 61

Query: 51  TKLLKYLSENSKSGEVELNDALCFFNYMIHMQ------PTPFMPSFNSLLGALAGKKYYV 104
            + L+ L +       E++DAL   + +          P P +P  N L+  L       
Sbjct: 62  KRRLRSLIQRE-----EIDDALALVDSIASGGGSGKCLPLPVVPC-NILIKRLCSGGRVA 115

Query: 105 NFICLSERL-NTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKV-FSPDVVTLGC 162
           +    +ER+  T+G     V+ N ++N +C+   + DA     R++  + F PD  T   
Sbjct: 116 D----AERVFATLGASATVVTYNTMVNGYCRAGRIEDAR----RLISGMPFPPDTFTFNP 167

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVI----------------------------- 193
           LIR LC++G+  +A  +F   +   C P+V+                             
Sbjct: 168 LIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKG 227

Query: 194 --PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
             P+++ Y  +I+ +C +G V++   +  D+   G  PDA  Y  +++  C +  W++ +
Sbjct: 228 CEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVE 287

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
                  EL  E  +        C PD +++ +I+ SLC+  LVD+A ++   M   G I
Sbjct: 288 -------ELFAEMASNK------CAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCI 334

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           PD+V YSS++DG C +GR+DDA +L   ++S GC PDT +Y T++     IE+ E A  L
Sbjct: 335 PDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEEL 394

Query: 372 YGEMISMGVRPD----NSCIL---------EAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
             EM+     PD    N+ I           A ++   +       D+  +N ++DGLC 
Sbjct: 395 MAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCN 454

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC---- 474
              +  A EL   L  YG +P++VT+  ++ GLC     E A  L+ +M     +C    
Sbjct: 455 ERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHS--DCPPDA 512

Query: 475 ----------------LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL-- 516
                           L+AIE L  MA+    P++ T +I+ + L K     E + LL  
Sbjct: 513 TTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSG 572

Query: 517 -----PSFLSRNQEESKLTR 531
                P  ++ N   S +T+
Sbjct: 573 MTNGTPDLITYNTVISNITK 592



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 120/439 (27%), Positives = 201/439 (45%), Gaps = 59/439 (13%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DAL  F+ M+H   +P + +++ LL A      Y   + L + +   G  PD V+ N+L+
Sbjct: 180 DALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLI 239

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           N  C    V +A   L  +      PD VT   +++ LC   ++ E   LF +  +  C 
Sbjct: 240 NAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCA 299

Query: 190 PN-------------------------------VIPNVICYASIIDGLCKDGFVNKVRVL 218
           P+                                IP+++ Y+SI+DGLC  G V+    L
Sbjct: 300 PDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVEL 359

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD 278
              +K  G  PD   Y ++++  C    WE A+       EL  E V  +      C PD
Sbjct: 360 LSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAE-------ELMAEMVCSD------CPPD 406

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
            +++ ++I SLC+  LVD+A ++   M   G  PD+V Y+S+IDG C    IDDA +L  
Sbjct: 407 EVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLS 466

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC------------ 386
           +++S GC PD  ++NTL+     +++ E+A  L   M+     PD +             
Sbjct: 467 NLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKG 526

Query: 387 -ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
            +L+A E  + +       + + +N +VD L K+ + + A +L   +      P+++TY 
Sbjct: 527 LLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGM--TNGTPDLITYN 584

Query: 446 VMICGLCIEGGIEKAYDLL 464
            +I  +   G +E+A DLL
Sbjct: 585 TVISNITKAGKMEEALDLL 603



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/421 (24%), Positives = 200/421 (47%), Gaps = 28/421 (6%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N+   E ++++AL   + +      P   ++  +L +L G + +     L   + +    
Sbjct: 240 NAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCA 299

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V+ N ++   C+   V  A   +  +      PD+VT   ++ GLC  G+  +A  L
Sbjct: 300 PDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVEL 359

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
            ++  ++ C+P+ I     Y +++ GLC          L  +M      PD   +N++I 
Sbjct: 360 LSRLKSYGCKPDTIA----YTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIA 415

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C        KG    A+++ E+  + NG     C+PD+++Y SII+ LC +  +D A 
Sbjct: 416 SLC-------QKGLVDRAIKVVEQM-SENG-----CNPDIVTYNSIIDGLCNERCIDDAM 462

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           EL  +++S G  PD+V +++L+ G C + R +DA +L V++    C PD +++NT+I S 
Sbjct: 463 ELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSL 522

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNS-------CILEAAELFRTLH----NTKFELDLTV 408
            +   + +A+     M   G  P+ S        +L+A +    L      T    DL  
Sbjct: 523 CQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNGTPDLIT 582

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +N ++  + K+ ++  A +L + +   G  P+ +TY  +  G+C E G ++A  +L  ++
Sbjct: 583 YNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQ 642

Query: 469 E 469
           +
Sbjct: 643 D 643



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 138/301 (45%), Gaps = 19/301 (6%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P   +FN+++ +L  K      I + E+++  G  PD V+ N +++  C    + DA   
Sbjct: 405 PDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMEL 464

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           L  +      PD+VT   L++GLC   ++ +A  L    +  DC P+       + ++I 
Sbjct: 465 LSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATT----FNTVIT 520

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
            LC+ G + +       M   G  P+   YN ++     A       G T  AL+L    
Sbjct: 521 SLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKA-------GKTQEALKLLSGM 573

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
            NG         PD+++Y ++I+++ K   +++A +L   M S G+ PD + Y SL  G 
Sbjct: 574 TNGT--------PDLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSLAYGI 625

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           C     D A ++   ++  G  PD + YN ++  + +  + + A+  +  M+S G  PD 
Sbjct: 626 CREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWRTDIAIDCFAHMVSSGCMPDE 685

Query: 385 S 385
           S
Sbjct: 686 S 686


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 137/435 (31%), Positives = 209/435 (48%), Gaps = 59/435 (13%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ PD    N +++C  K   + +A   L  I  +   PD VT G  I G    GK TEA
Sbjct: 503 GVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEA 562

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD-----A 231
           +  F + +       ++PN   Y  +I+G  K G + +   +F  +   G+ PD     A
Sbjct: 563 AKYFDEMLDH----GLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSA 618

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
           F++  L              G    AL++  E      E G++  PDV +Y S+I+  CK
Sbjct: 619 FIHGLL------------KNGRVQEALKVFSEL----KEKGLV--PDVFTYSSLISGFCK 660

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
              V+KA EL  +M  +GI P++ +Y++L+DG C  G I  ARKLF  +  +G  PD+ +
Sbjct: 661 QGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVT 720

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------NSCILE-----AAELFRTLH 398
           Y+T+I+ Y K E V EA SL+ EM S GV+P         + C  E     A  LFR + 
Sbjct: 721 YSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREML 780

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
              F   L+ FN L+DG CKS +++ A +LF+++      P+ VTYT +I   C  G +E
Sbjct: 781 QKGFATTLS-FNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKME 839

Query: 459 KAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILE 500
           +A  L  +M+E                  K+ +  +   L  KM  + VKPDE+T  ++ 
Sbjct: 840 EANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVI 899

Query: 501 ELLNKDENCHECMNL 515
               K++N  E   L
Sbjct: 900 YAHCKEDNLVEAFKL 914



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 108/441 (24%), Positives = 202/441 (45%), Gaps = 54/441 (12%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           SK+G+  + +A  +F+ M+     P  P +  L+         +  + +  RL+ +G+LP
Sbjct: 554 SKTGK--MTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLP 611

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           D  + +  ++   K   V +A      +  K   PDV T   LI G C QG+  +A  L 
Sbjct: 612 DVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELH 671

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            +     C   + PN+  Y +++DGLCK G + + R LF  M  +G+ PD+  Y+++I  
Sbjct: 672 DEM----CLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDG 727

Query: 241 YCCAVNWEDA----------------------------KGNTSAALELHEEFVNGNGELG 272
           YC + N  +A                            +G+   A+ L  E +       
Sbjct: 728 YCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG---- 783

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
                  LS+ ++I+  CK   + +A +LF +M ++ I+PD V Y+++ID +C  G++++
Sbjct: 784 ---FATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEE 840

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC------ 386
           A  LF  ++    I DT +Y +L+  Y+K+ +  E  +L+ +M++ GV+PD         
Sbjct: 841 ANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIY 900

Query: 387 -------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
                  ++EA +L   +         T+ + L+  LCK   L  A +L  ++   G +P
Sbjct: 901 AHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKP 960

Query: 440 NVVTYTVMICGLCIEGGIEKA 460
           ++     ++      G +++A
Sbjct: 961 SLAACNTLVRSFHEAGKMDEA 981



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 119/481 (24%), Positives = 203/481 (42%), Gaps = 87/481 (18%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCK------MIGVSDAFVALGRILRKVFSPDVVTLGCLI 164
           E +   GL PD+ + + L++ F +      ++ + D  V+ G         +++T   LI
Sbjct: 322 EEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCG------IPINLITYNVLI 375

Query: 165 RGLCMQGKFTEASGLFTKFVAFDCRPN-------------------------------VI 193
            GLC  GK  +A+ +    V   C+PN                               ++
Sbjct: 376 HGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLV 435

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P+ + Y ++I+GLC    ++    L   M   G+ P+  VY+ LI  Y      E+A+  
Sbjct: 436 PSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEAR-- 493

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
                      ++G    GV   PD+  Y +II+ L K   +++A    L+++ RG+ PD
Sbjct: 494 ---------RLLDGMSCSGVA--PDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPD 542

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
            V + + I GY   G++ +A K F  +   G +P+   Y  LIN + K   + EALS++ 
Sbjct: 543 AVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFR 602

Query: 374 EMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
            + ++GV PD             N  + EA ++F  L       D+  ++ L+ G CK  
Sbjct: 603 RLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQG 662

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE------- 473
            +  A+EL  ++   G  PN+  Y  ++ GLC  G I++A  L   M EK  E       
Sbjct: 663 EVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYS 722

Query: 474 -----------CLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
                        +A  L H+M  + V+P     + L     K+ +  + MNL    L +
Sbjct: 723 TMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQK 782

Query: 523 N 523
            
Sbjct: 783 G 783



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 131/488 (26%), Positives = 201/488 (41%), Gaps = 97/488 (19%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L   +   GL+P+  +  I+    C+   +++A +    + +    PD      LI G  
Sbjct: 285 LKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFM 344

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIP-NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI 227
            +G   E   L  K V   C    IP N+I Y  +I GLCK G + K   +   M   G 
Sbjct: 345 REGDIDEV--LRIKDVMVSCG---IPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGC 399

Query: 228 YPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIIN 287
            P++  +  LI  YC        + N   ALEL +E    N        P  +SY ++IN
Sbjct: 400 KPNSRTFCLLIEGYC-------REHNMGRALELLDEMEKRN------LVPSAVSYGAMIN 446

Query: 288 SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
            LC    +  A +L   M   G+ P+VVVYS LI  Y   GRI++AR+L   +   G  P
Sbjct: 447 GLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAP 506

Query: 348 DTSSYNTLIN-----------------------------------SYSKIEKVEEALSLY 372
           D   YN +I+                                    YSK  K+ EA   +
Sbjct: 507 DIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYF 566

Query: 373 GEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            EM+  G+ P+N               ++EA  +FR LH      D+   +  + GL K+
Sbjct: 567 DEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKN 626

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAI- 478
            R++ A ++F +L   G  P+V TY+ +I G C +G +EKA++L  +M      CLK I 
Sbjct: 627 GRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEM------CLKGIA 680

Query: 479 -----------------------ELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
                                  +L   M ++ ++PD +T S + +   K EN  E  +L
Sbjct: 681 PNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSL 740

Query: 516 LPSFLSRN 523
                S+ 
Sbjct: 741 FHEMPSKG 748



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 131/263 (49%), Gaps = 31/263 (11%)

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
           NG L      DV +Y  ++ +LCK   +  AK + ++M  +G+ P+  +YS +I+G C +
Sbjct: 217 NGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQV 276

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-NSC 386
           G ID+A +L  S+  +G +P+T +Y  +     + +++ EA   + EM   G++PD N+C
Sbjct: 277 GDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNAC 336

Query: 387 ------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
                       I E   +   + +    ++L  +N L+ GLCK  ++  A E+ K +  
Sbjct: 337 SALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVT 396

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK------------------IRECLK 476
            G +PN  T+ ++I G C E  + +A +LL +ME++                   ++   
Sbjct: 397 LGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSL 456

Query: 477 AIELLHKMAKRYVKPDEITVSIL 499
           A +LL KM    +KP+ +  SIL
Sbjct: 457 ANKLLEKMTFSGLKPNVVVYSIL 479



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 123/254 (48%), Gaps = 17/254 (6%)

Query: 123  VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
            +S N L++ +CK   + +A      ++ K   PD VT   +I   C  GK  EA+ LF +
Sbjct: 788  LSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKE 847

Query: 183  FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
                    N+I + + Y S++ G  K G  ++V  LF  M  +G+ PD   Y  +I  +C
Sbjct: 848  MQ----ERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHC 903

Query: 243  CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
                    + N   A +L +E V G G L      D+L     I +LCK   + +A +L 
Sbjct: 904  -------KEDNLVEAFKLRDEVV-GKGMLTKGTIHDLL-----ITALCKREDLTEASKLL 950

Query: 303  LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
             +M   G+ P +   ++L+  +   G++D+A ++F  ++S G +PDT++   L+N     
Sbjct: 951  DEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLND 1010

Query: 363  EKVEEALSLYGEMI 376
               E+A +L  +++
Sbjct: 1011 TDSEDARNLIKQLV 1024



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 22/156 (14%)

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           VV+  LID Y  MG +D+A  +F   +++  +      N+L+    K   +E    +Y  
Sbjct: 159 VVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLLKDLLKCGMMELFWKVYNG 218

Query: 375 MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
           M+                      + K   D+  +  LV  LCK+  LR A  +  ++  
Sbjct: 219 ML----------------------DAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDE 256

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            G  PN   Y+++I G+C  G I++A +L   M EK
Sbjct: 257 KGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEK 292


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 140/440 (31%), Positives = 215/440 (48%), Gaps = 48/440 (10%)

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           D V+LN ++   C   GV  A      I+   FS + V+ G LI GLC  G+  EA  L 
Sbjct: 106 DTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSYGILINGLCENGRVNEAVNLL 165

Query: 181 TKFVAFDCRPN----VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
                   +      V  NV+ Y+ +ID LC++GFV++    + +M G G+ P+ F Y S
Sbjct: 166 RMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGFEFYNEMMGNGVCPNEFTYGS 225

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LIR  C         G       L +E +    ++       V  +  +I+ LCK+ ++ 
Sbjct: 226 LIRGLC-------GVGKFLEGFGLVDEMIRRGLDV------SVYVFTVLIDGLCKNGMLV 272

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A+E+F +M +RG  P++V  ++L+ GYCL G +D AR+LF +I   G   D  +YN  I
Sbjct: 273 EAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFI 332

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD----NS---CILEAA------ELFRTLHNTKFE 403
           + Y K+ +V +A+ ++ EM   GV P+    NS   C+ +A       E+ +T+H +   
Sbjct: 333 HGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLT 392

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D+     L+DGLCKS RL  A  LF +L   G  P+V +YT++I G C    + +A +L
Sbjct: 393 PDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNL 452

Query: 464 LPDMEEK-------IRECL-----------KAIELLHKMAKRYVKPDEITVSILEELLNK 505
           L DM  K          CL            A  LL++M  +   PD IT SIL + L K
Sbjct: 453 LRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWK 512

Query: 506 DENCHECMNLLPSFLSRNQE 525
            ++  E + L    + R  E
Sbjct: 513 KQHLDEAVFLFNQMIKRGLE 532



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 185/398 (46%), Gaps = 65/398 (16%)

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           + V  +I+++C C+   V + F     ++     P+  T G LIRGLC  GKF E  GL 
Sbjct: 184 NVVMYSIVIDCLCRNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLV 243

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            + +    R  +  +V  +  +IDGLCK+G + + R +F +M  RG  P+     +L+  
Sbjct: 244 DEMI----RRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGG 299

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
           YC        KGN   A EL +      GE G     DV +Y   I+  CK   V  A  
Sbjct: 300 YC-------LKGNVDMARELFDAI----GEWGF--KRDVWTYNVFIHGYCKVGRVRDAVR 346

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           +F +M   G++P++V Y+SLID  C  G +  A ++  ++   G  PD  +   L++   
Sbjct: 347 VFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLC 406

Query: 361 KIEKVEEALSLYGEMISMGVRPD--------NSC-----ILEAAELFRTLHNTKFELDLT 407
           K +++++A+ L+ +++  G+ PD        + C     + EA  L R +H       + 
Sbjct: 407 KSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIV 466

Query: 408 VFNCLVDGLCKSWRLRSAWEL-----------------------------------FKKL 432
            ++CL+DGLC+S R+ +AW L                                   F ++
Sbjct: 467 TYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQM 526

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            + G EP+V+ YT+MI G C    I++A +L  +M  K
Sbjct: 527 IKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMK 564



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 156/347 (44%), Gaps = 32/347 (9%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  P+ V+   LM  +C    V  A      I    F  DV T    I G C  G+  +A
Sbjct: 285 GYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDA 344

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             +F +     CR  V+PN++ Y S+ID LCK G V+    +   M   G+ PD      
Sbjct: 345 VRVFDEM----CREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDI----- 395

Query: 237 LIRVYCCAVNWEDAKGNT-SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
              V CC +     K      A+ L  + V    E G+   PDV SY  +I+  C    +
Sbjct: 396 ---VTCCILLDGLCKSKRLDQAILLFNQLV----ESGLT--PDVWSYTILIHGCCTSRRM 446

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
            +A  L  DM  + ++P +V YS LIDG C  GRI +A +L   +  +G +PDT +Y+ L
Sbjct: 447 GEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSIL 506

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKF 402
           +++  K + ++EA+ L+ +MI  G+ PD  C             I EA  LFR +H    
Sbjct: 507 LDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNL 566

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
             D+  +  L + + KS      W+    +    P P V+ Y   +C
Sbjct: 567 VPDIVTYTILFNAVFKSGSNSYEWKFVNVIRDINPPPRVLKYLAALC 613



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 99/262 (37%), Gaps = 54/262 (20%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+GEV  + A      M     TP + +   LL  L   K     I L  +L   GL PD
Sbjct: 372 KAGEV--SGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPD 429

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             S  IL++  C    + +A   L  +  K   P +VT  CLI GLC  G+ + A  L  
Sbjct: 430 VWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLN 489

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           +          +P+ I Y+ ++D L K   +++   LF  M  RG+ PD   Y  +I  Y
Sbjct: 490 EMHV----KGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGY 545

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C                                                K   +D+A  L
Sbjct: 546 C------------------------------------------------KSERIDEAINL 557

Query: 302 FLDMKSRGIIPDVVVYSSLIDG 323
           F +M  + ++PD+V Y+ L + 
Sbjct: 558 FREMHMKNLVPDIVTYTILFNA 579



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 64/140 (45%), Gaps = 11/140 (7%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
            P + +++ L+  L       N   L   ++  G LPD ++ +IL++   K   + +A  
Sbjct: 462 VPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVF 521

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
              +++++   PDV+    +I G C   +  EA  LF +        N++P+++ Y  + 
Sbjct: 522 LFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHM----KNLVPDIVTYTILF 577

Query: 204 DGLCKDG-------FVNKVR 216
           + + K G       FVN +R
Sbjct: 578 NAVFKSGSNSYEWKFVNVIR 597


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 136/454 (29%), Positives = 215/454 (47%), Gaps = 54/454 (11%)

Query: 82  QPTPFMP---SFNSLLGALAGKKYYVNFIC--LSERLNTIGLLPDFVSLNILMNCFCKMI 136
           + + FMP   S+NS+L A+   +  V      +   +    + P+  + NIL+  FC + 
Sbjct: 169 KSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVG 228

Query: 137 GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNV 196
            +       G + R    P+VVT   LI   C  G+  EA GL     +      + PN+
Sbjct: 229 ELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSS----KGMQPNL 284

Query: 197 ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSA 256
           I Y  II+GLC++G + +   +  +M  +G  PD   YN+L+  YC        +GN   
Sbjct: 285 ISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYC-------KEGNFHQ 337

Query: 257 ALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV 316
           AL +H E V  NG       P V++Y ++INS+CK   +++A E F  M+ RG+ P+   
Sbjct: 338 ALVIHAEMVR-NG-----VSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERT 391

Query: 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
           Y++LIDG+   G +++A ++   +   G  P   +YN  I+ +  +E++EEAL +  EM+
Sbjct: 392 YTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMV 451

Query: 377 SMGVRPD---NSCILEA----AELFRTLHNTKFEL-------DLTVFNCLVDGLCKSWRL 422
             G+ PD    S I+       EL R     K E+       D   ++ L+ GLC+  RL
Sbjct: 452 EKGLAPDVVSYSTIISGFCRKGELDRAFQ-MKQEMVEKGVSPDAVTYSSLIQGLCEMRRL 510

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLH 482
             A +L +++   G  P+  TYT +I   C+EG + KA  L  +M             +H
Sbjct: 511 TEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEM-------------IH 557

Query: 483 KMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           K       PD +T S+L   LNK     E   LL
Sbjct: 558 KG----FLPDAVTYSVLINGLNKQARTREAKRLL 587



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 123/451 (27%), Positives = 207/451 (45%), Gaps = 54/451 (11%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           EL   L  F  M      P + ++N+L+ A            L + +++ G+ P+ +S N
Sbjct: 229 ELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYN 288

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +++N  C+   + +A+  L  +  K F+PD VT   L+ G C +G F +A  +  + V  
Sbjct: 289 VIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMV-- 346

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY----- 241
             R  V P+V+ Y ++I+ +CK   +N+    F  M+ RG+ P+   Y +LI  +     
Sbjct: 347 --RNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGL 404

Query: 242 ---CCAVNWEDAKGNTSAALELHEEFVNGN-------GELGVICH-------PDVLSYCS 284
                 +  E  +   S ++  +  F++G+         LGV+         PDV+SY +
Sbjct: 405 LNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYST 464

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           II+  C+   +D+A ++  +M  +G+ PD V YSSLI G C M R+ +A  L   +   G
Sbjct: 465 IISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMG 524

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAA 391
             PD  +Y TLIN+Y     + +AL L+ EMI  G  PD              +   EA 
Sbjct: 525 LPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAK 584

Query: 392 E-LFRTLHNTKFELDLT----VFNC----------LVDGLCKSWRLRSAWELFKKLPRYG 436
             LF+ ++      D+T    + NC          L+ G C    +  A  +F+ +    
Sbjct: 585 RLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERN 644

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            +P    Y V+I G C  G + KA++L  +M
Sbjct: 645 HKPGEAVYNVIIHGHCRGGNLPKAFNLYKEM 675



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 104/410 (25%), Positives = 198/410 (48%), Gaps = 27/410 (6%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E   + AL     M+    +P + ++ +L+ ++   +     +   +++   GL P+  +
Sbjct: 332 EGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERT 391

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
              L++ F +   +++A+  L  +    FSP VVT    I G C+  +  EA G+  + V
Sbjct: 392 YTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMV 451

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
                  + P+V+ Y++II G C+ G +++   +  +M  +G+ PDA  Y+SLI+  C  
Sbjct: 452 ----EKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLC-- 505

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                     + A +L +E +    ++G+   PD  +Y ++IN+ C +  ++KA  L  +
Sbjct: 506 -----EMRRLTEACDLSQEML----DMGLP--PDEFTYTTLINAYCVEGDLNKALHLHDE 554

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M  +G +PD V YS LI+G     R  +A++L   +  E  +P   +Y+TLI + S IE 
Sbjct: 555 MIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIE- 613

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
            +  ++L       G+      + EA  +F ++     +    V+N ++ G C+   L  
Sbjct: 614 FKSVVALIKGFCMKGL------MHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPK 667

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC 474
           A+ L+K++   G  P+ VT   +I  L  EG  E+  +++ D    +R C
Sbjct: 668 AFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGD---TLRSC 714



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 150/339 (44%), Gaps = 27/339 (7%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           LN+A    N M     +P + ++N+ +      +     + + + +   GL PD VS + 
Sbjct: 405 LNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYST 464

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           +++ FC+   +  AF     ++ K  SPD VT   LI+GLC   + TEA  L  + +   
Sbjct: 465 IISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDM- 523

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               + P+   Y ++I+  C +G +NK   L  +M  +G  PDA  Y+ LI       N 
Sbjct: 524 ---GLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLI-------NG 573

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCS---------IINSLCKDVLVDKA 298
            + +  T  A  L  + +        + +  ++  CS         +I   C   L+ +A
Sbjct: 574 LNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEA 633

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
             +F  M  R   P   VY+ +I G+C  G +  A  L+  +   G +P T +  TLI +
Sbjct: 634 DRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKA 693

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397
             K E + E +S   E+I   +R   SC L  AEL + L
Sbjct: 694 LFK-EGMNEEMS---EVIGDTLR---SCRLNEAELAKVL 725



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 109/261 (41%), Gaps = 77/261 (29%)

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLID------------------------------- 322
           ++D+A       KS G +P V+ Y+S++D                               
Sbjct: 157 MIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYT 216

Query: 323 ------GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
                 G+C +G +      F  +E  GC+P+  +YNTLI++Y K+ +++EA  L   M 
Sbjct: 217 YNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMS 276

Query: 377 SMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
           S G++P                      +L  +N +++GLC+   ++ AWE+ +++   G
Sbjct: 277 SKGMQP----------------------NLISYNVIINGLCREGSMKEAWEILEEMGYKG 314

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAI 478
             P+ VTY  ++ G C EG   +A  +  +M                    K R   +A+
Sbjct: 315 FTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAM 374

Query: 479 ELLHKMAKRYVKPDEITVSIL 499
           E   +M  R ++P+E T + L
Sbjct: 375 EFFDQMRIRGLRPNERTYTTL 395


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 132/424 (31%), Positives = 201/424 (47%), Gaps = 49/424 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  PD ++L   +  FC    +  A     +++   F  D V+ G LI GLC  G+   A
Sbjct: 258 GYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKAA 317

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L  +    +    V P+V+ Y +IIDG+CKD  VN    L+ +   + I+PD F YN+
Sbjct: 318 LELLRR----NDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNA 373

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI  +C         G    A++L  +  + N    +I  PDV ++  +++  CKD  + 
Sbjct: 374 LISGFCIV-------GKLKDAIDLFNKMTSKN----II--PDVYTFSILVDGFCKDGNIK 420

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +AK +   M  + I PDVV YSSL+DGYCL+  ++ A  +F ++   G   +  SYN +I
Sbjct: 421 EAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMI 480

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFE 403
           N + KI+ V+EA+ L+ EM    + PD             +  I  A EL   +H    +
Sbjct: 481 NGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQ 540

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D+  +N ++D LCK   +  A  L  KL   G  P++ TYT+++ GLC  G +E A  +
Sbjct: 541 PDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKV 600

Query: 464 LPDMEEKIRE-------------CLK-----AIELLHKMAKRYVKPDEITVS-ILEELLN 504
             D+  K                C K     A+ LL KM +    PD  T   I+  L  
Sbjct: 601 FEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIIILSLFE 660

Query: 505 KDEN 508
           KDEN
Sbjct: 661 KDEN 664



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 120/396 (30%), Positives = 178/396 (44%), Gaps = 74/396 (18%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKM--------------------------------- 135
             +++  +G   D VS   L+N  CK+                                 
Sbjct: 285 FHDKVIAMGFHLDQVSYGTLINGLCKVGETKAALELLRRNDGKLVQPDVVMYNTIIDGMC 344

Query: 136 --IGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
               V+DAF      + K   PDV T   LI G C+ GK  +A  LF K  +     N+I
Sbjct: 345 KDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTS----KNII 400

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P+V  ++ ++DG CKDG + + + +   M  + I PD   Y+SL+  YC       A   
Sbjct: 401 PDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKA--- 457

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
                   E   N     GV    +V SY  +IN  CK  +VD+A +LF +M  + I PD
Sbjct: 458 --------ESIFNTMSHRGVT--ANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPD 507

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           V+ YSSLIDG C  GRI  A +L   +   G  PD  +YN+++++  K   V++A++L  
Sbjct: 508 VITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLT 567

Query: 374 EMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
           ++   G+RP                      D+  +  LV GLC+S +L  A ++F+ L 
Sbjct: 568 KLKGQGIRP----------------------DMNTYTILVKGLCQSGKLEDARKVFEDLL 605

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
             G   +V  YTVMI G C +G  ++A  LL  MEE
Sbjct: 606 VKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEE 641



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 136/506 (26%), Positives = 234/506 (46%), Gaps = 88/506 (17%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           NDA+  F  ++   PTP    F  +LG+L   K+Y   + LS+++   G+  +F++ NIL
Sbjct: 92  NDAVSLFYRLLRQNPTPPDIEFGKILGSLVKSKHYHTVLSLSQKMEFKGIKLNFLNCNIL 151

Query: 129 MNCFCKMIGVSDAFVALGR------ILRKVFS----PDVVTLGCLIRGLC---------- 168
           +N FC++  +  AF  L R      IL+  F      D   L  ++  L           
Sbjct: 152 INSFCQLGLIPFAFSVLTRGVYWIEILKDCFDRKNLEDFKRLCWIVLILWDFKRLFLKDF 211

Query: 169 MQGK-----------------FTEASGLFTKF-VAFDCRPNVI------PNVICYASIID 204
           +Q +                 F +   L   F ++ +  P  I      P+ I   + I 
Sbjct: 212 LQSRLFNVLHSFKILIEYHKTFIKQKCLLKSFEISIEYTPPKILKNGYEPDTITLTTFIK 271

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           G C  G +++       +   G + D   Y +LI   C         G T AALEL    
Sbjct: 272 GFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLC-------KVGETKAALELLRR- 323

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
              +G+L     PDV+ Y +II+ +CKD  V+ A +L+ +  S+ I PDV  Y++LI G+
Sbjct: 324 --NDGKL---VQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGF 378

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP-- 382
           C++G++ DA  LF  + S+  IPD  +++ L++ + K   ++EA ++   M+   ++P  
Sbjct: 379 CIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDV 438

Query: 383 -------DNSCIL----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
                  D  C++    +A  +F T+ +     ++  +N +++G CK   +  A +LFK+
Sbjct: 439 VTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKE 498

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-----------IRECL----- 475
           +      P+V+TY+ +I GLC  G I  A +L+ +M  +           I + L     
Sbjct: 499 MHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHH 558

Query: 476 --KAIELLHKMAKRYVKPDEITVSIL 499
             KAI LL K+  + ++PD  T +IL
Sbjct: 559 VDKAITLLTKLKGQGIRPDMNTYTIL 584



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 161/317 (50%), Gaps = 17/317 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            +NDA   ++  +  +  P + ++N+L+          + I L  ++ +  ++PD  + +
Sbjct: 348 HVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFS 407

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           IL++ FCK   + +A   L  ++++   PDVVT   L+ G C+  +  +A  +F      
Sbjct: 408 ILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTM--- 464

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                V  NV  Y  +I+G CK   V++   LF +M  + I+PD   Y+SLI   C    
Sbjct: 465 -SHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLC---- 519

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G  S ALEL +E ++  G+      PD+++Y SI+++LCK   VDKA  L   +K
Sbjct: 520 ---KSGRISYALELVDE-MHYRGQ-----QPDIITYNSILDALCKKHHVDKAITLLTKLK 570

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            +GI PD+  Y+ L+ G C  G+++DARK+F  +  +G   D  +Y  +I  +      +
Sbjct: 571 GQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFD 630

Query: 367 EALSLYGEMISMGVRPD 383
           EAL+L  +M   G  PD
Sbjct: 631 EALALLSKMEENGCIPD 647



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/389 (25%), Positives = 178/389 (45%), Gaps = 45/389 (11%)

Query: 81  MQPTPFMPSFNSLLGALAGKKYYVN--FICLSERLNTIGLLPDFVSLNILMNCFCKMIGV 138
           +QP   M  +N+++  +   K+ VN  F   SE+++   + PD  + N L++ FC +  +
Sbjct: 329 VQPDVVM--YNTIIDGMCKDKH-VNDAFDLYSEKVSK-RIFPDVFTYNALISGFCIVGKL 384

Query: 139 SDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVIC 198
            DA     ++  K   PDV T   L+ G C  G   EA  +    +A   + ++ P+V+ 
Sbjct: 385 KDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNV----LAMMMKQSIKPDVVT 440

Query: 199 YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL 258
           Y+S++DG C    VNK   +F  M  RG+  +   YN +I  +C     ++A        
Sbjct: 441 YSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEA---MKLFK 497

Query: 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS 318
           E+H + +           PDV++Y S+I+ LCK   +  A EL  +M  RG  PD++ Y+
Sbjct: 498 EMHHKQI----------FPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYN 547

Query: 319 SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
           S++D  C    +D A  L   ++ +G  PD ++Y  L+    +  K+E+A  ++ +++  
Sbjct: 548 SILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVK 607

Query: 379 GVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
           G                      + LD+  +  ++ G C       A  L  K+   G  
Sbjct: 608 G----------------------YNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCI 645

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           P+  TY ++I  L  +   + A  LL +M
Sbjct: 646 PDAKTYEIIILSLFEKDENDMAEKLLREM 674



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 93/215 (43%), Gaps = 39/215 (18%)

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G  PD +  ++ I G+CL G+I  A      + + G   D  SY TLIN   K+ + + A
Sbjct: 258 GYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKAA 317

Query: 369 LSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
           L L        V+PD                      + ++N ++DG+CK   +  A++L
Sbjct: 318 LELLRRNDGKLVQPD----------------------VVMYNTIIDGMCKDKHVNDAFDL 355

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRY 488
           + +       P+V TY  +I G CI G ++ A                 I+L +KM  + 
Sbjct: 356 YSEKVSKRIFPDVFTYNALISGFCIVGKLKDA-----------------IDLFNKMTSKN 398

Query: 489 VKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
           + PD  T SIL +   KD N  E  N+L   + ++
Sbjct: 399 IIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQS 433


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 141/548 (25%), Positives = 238/548 (43%), Gaps = 110/548 (20%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A  F   M++    P   ++N+L+   +    +   + + + +    +LPD V+ N+
Sbjct: 270 MDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNM 329

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           LM   CK   + +A      +  K  +PDV +   ++ G   +G   + + LF   +   
Sbjct: 330 LMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDG 389

Query: 188 CRP-------------------------------NVIPNVICYASIIDGLCKDGFVNKVR 216
             P                                V PNV+ Y ++I  LC+ G ++   
Sbjct: 390 IAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAM 449

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
             F  M  +G+ PD + Y+ LI+ +C         G+   A EL  E +N NG      H
Sbjct: 450 EKFNQMIDQGVAPDKYAYHCLIQGFC-------THGSLLKAKELISEIMN-NG-----MH 496

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
            D++ + SIIN+LCK   V  A+ +F    + G+ P  VVYS L+DGYCL+G+++ A ++
Sbjct: 497 LDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRV 556

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------- 383
           F ++ S G  P+   Y TL+N Y KI +++E LSL+ EM+  G++P              
Sbjct: 557 FDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFE 616

Query: 384 -----------------------------------NSCILEAAELFRTLHNTKFELDLTV 408
                                              N C  EA  LF+ L     ++D+  
Sbjct: 617 AGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIIT 676

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
            N ++ G+ ++ R+  A +LF  + R G  P VVTY++MI  L  EG +E+A D+   M+
Sbjct: 677 LNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQ 736

Query: 469 EK------------IRECLKAIEL------LHKMAKRYVKPDEITVSILEELLNKDENCH 510
                         +RE LK  E+      L K+ +R    + +T  +L +L +    C 
Sbjct: 737 NAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVDLFSSKGTCR 796

Query: 511 ECMNLLPS 518
           E +  LP+
Sbjct: 797 EHIRFLPA 804



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 171/365 (46%), Gaps = 29/365 (7%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAF-VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
           GL  D +  N L+  FC+     +A  + L R       PDV +   L++ LC QGK  +
Sbjct: 141 GLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQ 200

Query: 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
           A  L       +      P+V+ Y ++IDG  K+G VNK   LF +M  RGI PD   Y+
Sbjct: 201 ADDLLRMMA--EGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYS 258

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           S++   C A            A++  E F+      GV+  P+  +Y ++I         
Sbjct: 259 SVVHALCKA-----------RAMDKAEAFLRQMVNKGVL--PNNWTYNNLIYGYSSTGQW 305

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
            +A  +F +M+ + I+PDVV ++ L+   C  G+I +AR +F ++  +G  PD  SYN +
Sbjct: 306 KEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIM 365

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRP------------DNSCILEAAE-LFRTLHNTKF 402
           +N Y+    + +   L+  M+  G+ P             N  +L+ A  +F  + +   
Sbjct: 366 LNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGV 425

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
           + ++  +  ++  LC+  ++  A E F ++   G  P+   Y  +I G C  G + KA +
Sbjct: 426 KPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKE 485

Query: 463 LLPDM 467
           L+ ++
Sbjct: 486 LISEI 490



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 169/369 (45%), Gaps = 33/369 (8%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           L P   +  ILM+C  +      A    G++LR     D++    L++G C   +  EA 
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEAL 166

Query: 178 G-LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY--PDAFVY 234
             L  +     C    +P+V  Y+ ++  LC  G   +   L   M   G    PD   Y
Sbjct: 167 DILLHRTPELGC----VPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAY 222

Query: 235 NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294
           N++I  +         +G+ + A +L +E V    + G+   PD ++Y S++++LCK   
Sbjct: 223 NTVIDGFF-------KEGDVNKACDLFKEMV----QRGI--PPDFVTYSSVVHALCKARA 269

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           +DKA+     M ++G++P+   Y++LI GY   G+  +A ++F  +  +  +PD  ++N 
Sbjct: 270 MDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNM 329

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTK 401
           L+ S  K  K++EA  ++  M   G  PD               C+++  +LF  +    
Sbjct: 330 LMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDG 389

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
               +  FN L+        L  A  +F ++  +G +PNV+TYT +I  LC  G ++ A 
Sbjct: 390 IAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAM 449

Query: 462 DLLPDMEEK 470
           +    M ++
Sbjct: 450 EKFNQMIDQ 458



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 101/246 (41%), Gaps = 39/246 (15%)

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE-GCIPDTSSYNTLI 356
           A   F  +   G+  D+++ + L+ G+C   R D+A  + +    E GC+PD  SY+ L+
Sbjct: 130 ALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILL 189

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
            S     K  +A  L   M   G      C                  D+  +N ++DG 
Sbjct: 190 KSLCDQGKSGQADDLLRMMAEGGA----VC----------------SPDVVAYNTVIDGF 229

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK------ 470
            K   +  A +LFK++ + G  P+ VTY+ ++  LC    ++KA   L  M  K      
Sbjct: 230 FKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNN 289

Query: 471 ------------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPS 518
                         +  +A+ +  +M ++ + PD +T ++L   L K     E  ++  +
Sbjct: 290 WTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDT 349

Query: 519 FLSRNQ 524
              + Q
Sbjct: 350 MAMKGQ 355


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 128/452 (28%), Positives = 212/452 (46%), Gaps = 56/452 (12%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           +  L  A  FF+ M+     P + ++N L+ AL G+ +    + +   +   G  P+ V+
Sbjct: 128 DASLTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVT 187

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N L+  F +   V  A   +G +L     P++VT   ++ G+C  GK  +A  +F + +
Sbjct: 188 YNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMM 247

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
               R  + P+ + Y +++ G CK G  ++   +F +M  +GI PD   + SLI V C A
Sbjct: 248 ----REGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKA 303

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
            N E A    +   ++ E  +  N           +++ ++I+  CK   +D A      
Sbjct: 304 GNLEWA---VTLVRQMRERGLQMNE----------VTFTALIDGFCKKGFLDDALLAVRG 350

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M+   I P VV Y++LI+GYC++GR+D+AR+L   +E++G  PD  +Y+T+I++Y K   
Sbjct: 351 MRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCD 410

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
              A  L  +M+  GV PD                         ++ L+  LC+  RL  
Sbjct: 411 THSAFELNQQMLEKGVLPDA----------------------ITYSSLIRVLCEEKRLSD 448

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKM 484
           A  LFK + + G +P+  TYT +I G C EG +E                 +A+ L  KM
Sbjct: 449 AHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVE-----------------RALSLHDKM 491

Query: 485 AKRYVKPDEITVSILEELLNKDENCHECMNLL 516
            K  V PD +T S+L   L+K     E   LL
Sbjct: 492 VKAGVLPDVVTYSVLINGLSKSARAMEAQQLL 523



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/434 (25%), Positives = 205/434 (47%), Gaps = 47/434 (10%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G++E  DA   F+ M+     P   S+N+L+G           + +   +   G++PD
Sbjct: 232 KAGKME--DARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPD 289

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+   L++  CK   +  A   + ++  +    + VT   LI G C +G   +A  L  
Sbjct: 290 VVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDA--LLA 347

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
                 CR  + P+V+CY ++I+G C  G +++ R L  +M+ +G+ PD   Y+++I  Y
Sbjct: 348 VRGMRQCR--IKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAY 405

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C          +T +A EL+++ +    E GV+  PD ++Y S+I  LC++  +  A  L
Sbjct: 406 C-------KNCDTHSAFELNQQML----EKGVL--PDAITYSSLIRVLCEEKRLSDAHVL 452

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F +M   G+ PD   Y+SLIDG+C  G ++ A  L   +   G +PD  +Y+ LIN  SK
Sbjct: 453 FKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSK 512

Query: 362 IEKVEEALSLYGEMISMGVRPDNS----------------------------CILEAAEL 393
             +  EA  L  ++      P N+                             + EA ++
Sbjct: 513 SARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKV 572

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
           ++++ +  + LD +V++ L+ G C++  +  A    K++ + G  PN  +   +I GL  
Sbjct: 573 YQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTISLIRGLFE 632

Query: 454 EGGIEKAYDLLPDM 467
            G + +A  ++  +
Sbjct: 633 NGMVVEADQVIQQL 646



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 195/437 (44%), Gaps = 47/437 (10%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           ++GEV+  + L     M+     P + +FNS++  +       +   + + +   GL PD
Sbjct: 197 RAGEVDGAERL--VGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPD 254

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            VS N L+  +CK     +A      + +K   PDVVT   LI  +C  G    A  L  
Sbjct: 255 GVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVR 314

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           +         +  N + + ++IDG CK GF++   +    M+   I P    YN+LI  Y
Sbjct: 315 QMR----ERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGY 370

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C     ++A+        LHE    G         PDV++Y +II++ CK+     A EL
Sbjct: 371 CMVGRMDEARE------LLHEMEAKG-------LKPDVVTYSTIISAYCKNCDTHSAFEL 417

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
              M  +G++PD + YSSLI   C   R+ DA  LF ++   G  PD  +Y +LI+ + K
Sbjct: 418 NQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCK 477

Query: 362 IEKVEEALSLYGEMISMGVRPD-------------NSCILEAAE-LFRTLH------NTK 401
              VE ALSL+ +M+  GV PD             ++  +EA + LF+  H      NTK
Sbjct: 478 EGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTK 537

Query: 402 FE--------LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
           ++         +L     L+ G C    +  A ++++ +       +   Y+V+I G C 
Sbjct: 538 YDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCR 597

Query: 454 EGGIEKAYDLLPDMEEK 470
            G + KA      M ++
Sbjct: 598 AGNVMKALSFHKQMLQR 614



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 175/369 (47%), Gaps = 45/369 (12%)

Query: 193 IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252
           +P+V+ Y +++  L  D  +   R  F  M   G+ P+ + YN LIR  C        +G
Sbjct: 113 VPSVLAYNAVLLAL-SDASLTSARRFFDSMLSDGVAPNVYTYNILIRALC-------GRG 164

Query: 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
           +   AL +  +        G  C P+V++Y +++ +  +   VD A+ L   M   G+ P
Sbjct: 165 HRKEALSILRDM------RGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKP 218

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
           ++V ++S+++G C  G+++DARK+F  +  EG  PD  SYNTL+  Y K     EALS++
Sbjct: 219 NLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVF 278

Query: 373 GEMISMGVRPD----NSCI--------LE-AAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            EM   G+ PD     S I        LE A  L R +     +++   F  L+DG CK 
Sbjct: 279 AEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKK 338

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK--------- 470
             L  A    + + +   +P+VV Y  +I G C+ G +++A +LL +ME K         
Sbjct: 339 GFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTY 398

Query: 471 -------IREC--LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
                   + C    A EL  +M ++ V PD IT S L  +L +++   +   L  + + 
Sbjct: 399 STIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIK 458

Query: 522 RNQEESKLT 530
              +  + T
Sbjct: 459 LGLQPDEFT 467



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 143/339 (42%), Gaps = 27/339 (7%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+DAL     M   +  P +  +N+L+              L   +   GL PD V+ + 
Sbjct: 341 LDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYST 400

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           +++ +CK      AF    ++L K   PD +T   LIR LC + + ++A  LF   +   
Sbjct: 401 IISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLG 460

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            +P+       Y S+IDG CK+G V +   L   M   G+ PD   Y+ LI       N 
Sbjct: 461 LQPDEF----TYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLI-------NG 509

Query: 248 EDAKGNTSAALEL-----HEEFVNGNGELGVICH----PDVLSYCSIINSLCKDVLVDKA 298
                    A +L     HEE +  N +   + H     ++ S  +++   C   L+++A
Sbjct: 510 LSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEA 569

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
            +++  M  R    D  VYS LI G+C  G +  A      +   G  P+++S  +LI  
Sbjct: 570 DKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTISLIRG 629

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397
             +   V EA  +  +++       N C L  AE  + L
Sbjct: 630 LFENGMVVEADQVIQQLL-------NCCSLADAEASKAL 661


>gi|356561683|ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 133/440 (30%), Positives = 207/440 (47%), Gaps = 57/440 (12%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DA+  FN M+ M+P P    FN++L +L   K Y   I L ++    G+ PD  +L+IL+
Sbjct: 44  DAVASFNRMLLMRPPPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILI 103

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           NCFC +  ++ AF     IL++ + P+ +TL  LI+GLC  G+   A     K VA   +
Sbjct: 104 NCFCHLTHITFAFSVFANILKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQ 163

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
            + +     Y ++I+GLCK G    V  L   ++G  + PD  +Y ++I   C      D
Sbjct: 164 LDQVS----YGTLINGLCKAGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGD 219

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
                  A +L+ E +           P+V +Y ++I+  C    + +A  L  +MK + 
Sbjct: 220 -------ACDLYSEMIVKG------ISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKN 266

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
           I PDV  ++ LID     G+ID+A  LF  ++ +   P+  +Y +LI+   K   +E A+
Sbjct: 267 INPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAI 326

Query: 370 SLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
           +L  +M   G++P                      ++  +  L+D LCK  RL +A + F
Sbjct: 327 ALCKKMKEQGIQP----------------------NVYSYTILLDALCKGGRLENAKQFF 364

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYV 489
           + L   G   NV TY VMI GLC  G      DL   ME K   C+              
Sbjct: 365 QHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGK--GCM-------------- 408

Query: 490 KPDEITV-SILEELLNKDEN 508
            P+ IT  +I+  LL KDEN
Sbjct: 409 -PNAITFKTIICALLEKDEN 427



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 104/228 (45%), Gaps = 17/228 (7%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ P+  +   L++ FC M  + +AF  L  +  K  +PDV T   LI  L  +GK  EA
Sbjct: 231 GISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGKIDEA 290

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             LF +        N+ PN++ Y S+IDGLCK+  + +   L   MK +GI P+ + Y  
Sbjct: 291 MSLFEEMK----HKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPNVYSYTI 346

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           L+   C     E+AK      L      V G        H +V +Y  +IN LCK  L  
Sbjct: 347 LLDALCKGGRLENAKQFFQHLL------VKGY-------HLNVRTYNVMINGLCKAGLFG 393

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
              +L   M+ +G +P+ + + ++I         D A K    + + G
Sbjct: 394 DVMDLKSKMEGKGCMPNAITFKTIICALLEKDENDKAEKFLREMIARG 441



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 115/260 (44%), Gaps = 30/260 (11%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P    + +I++SL K+        LF   +  GI PD+   S LI+ +C +  I  A  +
Sbjct: 59  PPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHLTHITFAFSV 118

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC---------- 386
           F +I   G  P+  + NTLI       +++ AL  + ++++ G + D             
Sbjct: 119 FANILKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLDQVSYGTLINGLCK 178

Query: 387 ---ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                  A L R L     + DL ++  ++  LCK+  L  A +L+ ++   G  PNV T
Sbjct: 179 AGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPNVFT 238

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELL 503
           YT +I G CI G +++A+ LL +M+ K                  + PD  T +IL + L
Sbjct: 239 YTTLIHGFCIMGNLKEAFSLLNEMKLK-----------------NINPDVYTFNILIDAL 281

Query: 504 NKDENCHECMNLLPSFLSRN 523
            K+    E M+L      +N
Sbjct: 282 AKEGKIDEAMSLFEEMKHKN 301



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 4/165 (2%)

Query: 63  SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF 122
           + E ++++A+  F  M H    P + ++ SL+  L    +    I L +++   G+ P+ 
Sbjct: 282 AKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPNV 341

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
            S  IL++  CK   + +A      +L K +  +V T   +I GLC  G F +   L +K
Sbjct: 342 YSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSK 401

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI 227
                C    +PN I + +II  L +    +K      +M  RG+
Sbjct: 402 MEGKGC----MPNAITFKTIICALLEKDENDKAEKFLREMIARGL 442


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 129/452 (28%), Positives = 209/452 (46%), Gaps = 56/452 (12%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           +  L  A  FF+ M+     P + ++N L+ AL G+ +    + +   +   G  P+ V+
Sbjct: 168 DASLTSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVT 227

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N L+  F +   V  A   +G +      P++VT   ++ G+C  GK  +A  +F + V
Sbjct: 228 YNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMV 287

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
               R  + P+ + Y +++ G CK G  ++   +F +M  +GI PD   + SLI V C A
Sbjct: 288 ----REGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKA 343

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
            N E A    +   ++ E  +  N           +++ ++I+  CK   +D A      
Sbjct: 344 GNLERA---VTLVRQMRERGLQMNE----------VTFTALIDGFCKKGFLDDALLAVRG 390

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           MK   I P VV Y++LI+GYC++GR+D+AR+L   +E++G  PD  +Y+T+I++Y K   
Sbjct: 391 MKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCD 450

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
              A  L  +M+  GV PD                         ++ L+  LC   RL  
Sbjct: 451 THSAFELNQQMLEKGVLPDA----------------------ITYSSLIRVLCGEKRLSD 488

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKM 484
           A  LFK + + G +P+  TYT +I G C EG +E A                 + L  KM
Sbjct: 489 AHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESA-----------------LSLHDKM 531

Query: 485 AKRYVKPDEITVSILEELLNKDENCHECMNLL 516
            K  V PD +T S+L   L+K     E   LL
Sbjct: 532 VKAGVLPDVVTYSVLINGLSKSARAMEAQQLL 563



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/434 (25%), Positives = 204/434 (47%), Gaps = 47/434 (10%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G++E  DA   F+ M+     P   S+N+L+G           + +   +   G++PD
Sbjct: 272 KAGKME--DARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPD 329

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+   L++  CK   +  A   + ++  +    + VT   LI G C +G   +A  L  
Sbjct: 330 VVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDA--LLA 387

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
                 CR  + P+V+CY ++I+G C  G +++ R L  +M+ +G+ PD   Y+++I  Y
Sbjct: 388 VRGMKQCR--IKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAY 445

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C          +T +A EL+++ +    E GV+  PD ++Y S+I  LC +  +  A  L
Sbjct: 446 C-------KNCDTHSAFELNQQML----EKGVL--PDAITYSSLIRVLCGEKRLSDAHVL 492

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F +M   G+ PD   Y+SLIDG+C  G ++ A  L   +   G +PD  +Y+ LIN  SK
Sbjct: 493 FKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSK 552

Query: 362 IEKVEEALSLYGEMISMGVRPDNS----------------------------CILEAAEL 393
             +  EA  L  ++      P N+                             + EA ++
Sbjct: 553 SARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKV 612

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
           ++++ +  + LD +V++ L+ G C++  +  A    K++ + G  PN  +   +I GL  
Sbjct: 613 YQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTISLIRGLFE 672

Query: 454 EGGIEKAYDLLPDM 467
            G + +A  ++  +
Sbjct: 673 NGMVVEADQVIQQL 686



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 163/342 (47%), Gaps = 45/342 (13%)

Query: 193 IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252
           +P+V+ Y +++  L  D  +   R  F  M   G+ P+ + YN L+R  C        +G
Sbjct: 153 VPSVLAYNAVLLAL-SDASLTSARRFFDSMLSDGVAPNVYTYNILVRALC-------GRG 204

Query: 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
           +   AL +  +        G  C P+V++Y +++ +  +   VD A+ L   M+  G+ P
Sbjct: 205 HRKEALSILRDM------RGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKP 258

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
           ++V ++S+++G C  G+++DARK+F  +  EG  PD  SYNTL+  Y K     EALS++
Sbjct: 259 NLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVF 318

Query: 373 GEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            EM   G+ PD                +  A  L R +     +++   F  L+DG CK 
Sbjct: 319 AEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKK 378

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK--------- 470
             L  A    + + +   +P+VV Y  +I G C+ G +++A +LL +ME K         
Sbjct: 379 GFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTY 438

Query: 471 -------IREC--LKAIELLHKMAKRYVKPDEITVSILEELL 503
                   + C    A EL  +M ++ V PD IT S L  +L
Sbjct: 439 STIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVL 480



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 172/387 (44%), Gaps = 41/387 (10%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           ++GEV+  + L     M      P + +FNS++  +       +   + + +   GL PD
Sbjct: 237 RAGEVDGAERL--VGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPD 294

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            VS N L+  +CK     +A      + +K   PDVVT   LI  +C  G    A  L  
Sbjct: 295 GVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVR 354

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           +         +  N + + ++IDG CK GF++   +    MK   I P    YN+LI  Y
Sbjct: 355 QMR----ERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGY 410

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C     ++A+        LHE    G         PDV++Y +II++ CK+     A EL
Sbjct: 411 CMVGRMDEARE------LLHEMEAKG-------LKPDVVTYSTIISAYCKNCDTHSAFEL 457

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
              M  +G++PD + YSSLI   C   R+ DA  LF ++   G  PD  +Y +LI+ + K
Sbjct: 458 NQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCK 517

Query: 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
              VE ALSL+ +M+  GV P                      D+  ++ L++GL KS R
Sbjct: 518 EGNVESALSLHDKMVKAGVLP----------------------DVVTYSVLINGLSKSAR 555

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMI 448
              A +L  KL    P P    Y  ++
Sbjct: 556 AMEAQQLLFKLYHEDPIPANTKYDALM 582



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 156/410 (38%), Gaps = 101/410 (24%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           ++AL  F  M      P + +F SL+  +         + L  ++   GL  + V+   L
Sbjct: 312 HEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTAL 371

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           ++ FCK   + DA +A+  + +    P VV    LI G CM G+  EA  L  +  A   
Sbjct: 372 IDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGL 431

Query: 189 RPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVRV 217
           +P+V+                               P+ I Y+S+I  LC +  ++   V
Sbjct: 432 KPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHV 491

Query: 218 LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277
           LF +M   G+ PD F Y SLI  +C        +GN  +AL LH++ V      GV+  P
Sbjct: 492 LFKNMIKLGLQPDEFTYTSLIDGHC-------KEGNVESALSLHDKMVKA----GVL--P 538

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP------------------------- 312
           DV++Y  +IN L K     +A++L   +     IP                         
Sbjct: 539 DVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLK 598

Query: 313 -------------------------DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
                                    D  VYS LI G+C  G +  A      +   G  P
Sbjct: 599 GFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFAP 658

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397
           +++S  +LI    +   V EA  +  +++       N C L  AE  + L
Sbjct: 659 NSTSTISLIRGLFENGMVVEADQVIQQLL-------NYCSLADAEASKAL 701


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/414 (30%), Positives = 201/414 (48%), Gaps = 30/414 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           + +DA+  F  M    P P   ++N+++  L+      + I L E +   G  P+  S N
Sbjct: 25  QCSDAVLHFREMSKTCP-PDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYN 83

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            +++ FCK   V +A   L +++ +   PDVV+   +I GLC   +  EA  +  K +  
Sbjct: 84  TVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQR 143

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C+PNVI     Y +++DG C+ G ++    L   M  RG  P+A  YN+++   C    
Sbjct: 144 GCQPNVIT----YGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRK 199

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            +       +AL+L +E      E    C PDV +Y +I++SL K   VD A  L   M 
Sbjct: 200 LD-------SALQLFKEM-----EESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMV 247

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           S+G  P+VV YSSL+ G C  G++D+A  L   +   GC P+  +YNT+I+ + K+ +++
Sbjct: 248 SKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRID 307

Query: 367 EALSLYGEMISMGVRP---------DNSCILEAAE----LFRTLHNTKFELDLTVFNCLV 413
           EA  L  EM+  G +P         D  C    AE    L   +    +  +L  +N L+
Sbjct: 308 EAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLL 367

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           D  CK   +  A +L   + + G  PNVV+Y  +I GLC    + +   LL  M
Sbjct: 368 DMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQM 421



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 133/475 (28%), Positives = 217/475 (45%), Gaps = 61/475 (12%)

Query: 67  ELNDALCFFNYMIHMQPTP-FMPSFNSLLGALAGKKYYVNFIC-LSERLNTIGLLPDFVS 124
           +L+ AL  F  M      P  + ++++++ +L  K   V+  C L E + + G  P+ V+
Sbjct: 199 KLDSALQLFKEMEESGSCPPDVFTYSTIVDSLV-KSGKVDDACRLVEAMVSKGCSPNVVT 257

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            + L++  CK   + +A   L R+ R   SP++VT   +I G C  G+  EA  L  + V
Sbjct: 258 YSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMV 317

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
              C+PNV+     Y  ++D  CK G       L   M  +G  P+ F YNSL+ ++C  
Sbjct: 318 DGGCQPNVVT----YTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFC-- 371

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                 K     A +L    +         C P+V+SY ++I  LCK   V +   L   
Sbjct: 372 -----KKDEVERACQLLSSMIQKG------CVPNVVSYNTVIAGLCKATKVHEGVLLLEQ 420

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M S   +PD+V ++++ID  C   R+D A +LF  I+  GC P+  +YN+L++   K  +
Sbjct: 421 MLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRR 480

Query: 365 VEEALSLYGEMI-SMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLR 423
            ++A  L  EM    G  PD                      +  +N ++DGLCKS R+ 
Sbjct: 481 FDQAEYLLREMTRKQGCSPD----------------------IITYNTVIDGLCKSKRVD 518

Query: 424 SAWELFKKLPRYGPEPNVVTYTVMICGLC---------------IEGGIEKA---YDLLP 465
            A++LF ++   G  P+ VTY+++I  LC               ++ G +     Y  L 
Sbjct: 519 RAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLI 578

Query: 466 DMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
           D   K     KA+E+L  +  +   PD +T SI  + L+K     +   LL + L
Sbjct: 579 DGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETML 633



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 115/408 (28%), Positives = 188/408 (46%), Gaps = 42/408 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            +++A      M+     P + ++  LL A        + I L E +   G +P+  + N
Sbjct: 305 RIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYN 364

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ FCK   V  A   L  +++K   P+VV+   +I GLC   K  E   L  + ++ 
Sbjct: 365 SLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSN 424

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           +C    +P+++ + +IID +CK   V+    LF  ++  G  P+   YNSL+   C +  
Sbjct: 425 NC----VPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRR 480

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
           ++ A+        L  E     G     C PD+++Y ++I+ LCK   VD+A +LFL M 
Sbjct: 481 FDQAE-------YLLREMTRKQG-----CSPDIITYNTVIDGLCKSKRVDRAYKLFLQML 528

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           S G+ PD V YS +I   C    +D+A  +   +   G  P   +Y TLI+ + K   ++
Sbjct: 529 SDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLD 588

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           +AL +   ++S G  P                      D+  F+  +D L K  RLR A 
Sbjct: 589 KALEILQLLLSKGSYP----------------------DVVTFSIFIDWLSKRGRLRQAG 626

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC 474
           EL + + R G  P+ VTY  ++ G C     E A DL     E +R+C
Sbjct: 627 ELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLF----EVMRQC 670



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 150/320 (46%), Gaps = 18/320 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E+  A    + MI     P + S+N+++  L         + L E++ +   +PD V+ N
Sbjct: 375 EVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFN 434

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            +++  CK   V  A+     I     +P++VT   L+ GLC   +F +A  L  +    
Sbjct: 435 TIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTR- 493

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             +    P++I Y ++IDGLCK   V++   LFL M   G+ PD   Y+ +I   C    
Sbjct: 494 --KQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLC---K 548

Query: 247 WEDA-KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
           W    + N    L L   F            P  ++Y ++I+  CK   +DKA E+   +
Sbjct: 549 WRFMDEANNVLELMLKNGF-----------DPGAITYGTLIDGFCKTGNLDKALEILQLL 597

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
            S+G  PDVV +S  ID     GR+  A +L  ++   G +PDT +YNTL+  +    + 
Sbjct: 598 LSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRT 657

Query: 366 EEALSLYGEMISMGVRPDNS 385
           E+A+ L+  M   G  PDN+
Sbjct: 658 EDAVDLFEVMRQCGCEPDNA 677


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/460 (27%), Positives = 197/460 (42%), Gaps = 81/460 (17%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           + +++ A   F  M+     P + ++N+LL  L           L + +   GL PD  S
Sbjct: 209 QTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFS 268

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            + LM   CK   +  A             PDVV    LI GLC  G+  EA  LF K  
Sbjct: 269 YDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMR 328

Query: 185 AFDCRPNVI-------------------------------PNVICYASIIDGLCKDGFVN 213
              C P+V+                               PNVI Y+S+IDGLCK G V 
Sbjct: 329 ENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVR 388

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE------------------------- 248
             + +F  M  RGI P+   YNSLI  +C     +                         
Sbjct: 389 DAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLI 448

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
           D    T  A E +  F +   +    C+PDV++Y  +I   CK   +D A+ LF DM  +
Sbjct: 449 DGLCKTGRAPEANRLFGDMKAKF---CNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQ 505

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
            ++PDVV +S+L++GYC  G +DDA +L   + +  C PD  +Y +L++ + K+ ++ EA
Sbjct: 506 AVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEA 565

Query: 369 LSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
             +   M   G +P                      ++  +  L+D  C++ +   A+ L
Sbjct: 566 RRVLKRMAKRGCQP----------------------NVVTYTALIDAFCRAGKPTVAYRL 603

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
            +++   G +PNV+TY  +I G C  G +E+A  +L  +E
Sbjct: 604 LEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLE 643



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 119/422 (28%), Positives = 199/422 (47%), Gaps = 51/422 (12%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L E +   G +PD    N +++  CK     +   AL          +V+T   +I GLC
Sbjct: 81  LLEEMRESGPVPDAAIYNFVIHALCK---ARNTAKALDYFRSMECEKNVITWTIMIDGLC 137

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
              +  EA+  F K      +   +PN   Y  +I+G CK   V++  +L  +MK  G+ 
Sbjct: 138 KANRLPEATTYFAKMK----KKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLA 193

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           P+   Y+++I  +C        +     A +L  + V  NG     C P++++Y ++++ 
Sbjct: 194 PNVVTYSTVIHGFC-------RQTKVDTAYKLFRQMVE-NG-----CMPNLVTYNTLLSG 240

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           LC++ L+D+A EL  +M+ RG+ PD   Y +L+ G C  G+ID A K+F    +  C PD
Sbjct: 241 LCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPD 300

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFR 395
             +Y+TLI    K  +++EA  L+ +M      PD                + EA ++  
Sbjct: 301 VVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLE 360

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
           T+ +     ++  ++ L+DGLCK+ ++R A E+FK++   G EPNVVTY  +I G C+  
Sbjct: 361 TMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTN 420

Query: 456 GIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVS 497
           G++ A  L+ +M                    K     +A  L   M  ++  PD IT S
Sbjct: 421 GVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYS 480

Query: 498 IL 499
            L
Sbjct: 481 CL 482



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 126/464 (27%), Positives = 217/464 (46%), Gaps = 50/464 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLL-GALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           L +A  +F  M      P   ++N L+ G     K +  ++ L E +   GL P+ V+ +
Sbjct: 142 LPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKE-MKESGLAPNVVTYS 200

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            +++ FC+   V  A+    +++     P++VT   L+ GLC  G   EA  L  +    
Sbjct: 201 TVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMR-- 258

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                + P+   Y +++ GLCK G ++    +F D       PD   Y++LI   C A  
Sbjct: 259 --ERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKA-- 314

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G    A +L E+    +      C PDV+++ ++++ LCK   + +A+++   M+
Sbjct: 315 -----GRLDEACKLFEKMRENS------CEPDVVTFTALMDGLCKGDRLQEAQQVLETME 363

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            R   P+V+ YSSLIDG C  G++ DA+++F  +   G  P+  +YN+LI+ +     V+
Sbjct: 364 DRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVD 423

Query: 367 EALSLYGEMISMGVRPD----NSCI---------LEAAELFRTLHNTKFELDLTVFNCLV 413
            AL L  EM + G  PD    N+ I          EA  LF  +       D+  ++CL+
Sbjct: 424 SALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLI 483

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE---- 469
            G CK  R+  A  LF  + +    P+VVT++ ++ G C  G ++ A  LL +M      
Sbjct: 484 GGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCS 543

Query: 470 --------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                         K+   ++A  +L +MAKR  +P+ +T + L
Sbjct: 544 PDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTAL 587



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 170/361 (47%), Gaps = 52/361 (14%)

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
           P + PNV  YA +I GLCK G ++K   L  +M+  G  PDA +YN +I   C A N   
Sbjct: 53  PGITPNVFTYAVVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAK 112

Query: 250 AKGNTSAALELHEEFVNGNGELGVICH--------------------PDVLSYCSIINSL 289
           A  +   ++E  +  +     +  +C                     P+  +Y  +IN  
Sbjct: 113 AL-DYFRSMECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGF 171

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
           CK   V +A  L  +MK  G+ P+VV YS++I G+C   ++D A KLF  +   GC+P+ 
Sbjct: 172 CKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNL 231

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRT 396
            +YNTL++   +   ++EA  L  EM   G++PD                I  A ++F  
Sbjct: 232 VTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFED 291

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
             N     D+  ++ L+ GLCK+ RL  A +LF+K+     EP+VVT+T ++ GLC    
Sbjct: 292 NSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDR 351

Query: 457 IEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSI 498
           +++A  +L  ME+                  K  +   A E+  +M  R ++P+ +T + 
Sbjct: 352 LQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNS 411

Query: 499 L 499
           L
Sbjct: 412 L 412



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 117/459 (25%), Positives = 204/459 (44%), Gaps = 64/459 (13%)

Query: 47  VEEKTKLLKYLSENSKSGEV----ELNDALCFFNYMIHMQP----------TPFMPSFNS 92
           ++E  KL + + ENS   +V     L D LC  + +   Q           TP + +++S
Sbjct: 317 LDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSS 376

Query: 93  LLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKV 152
           L+  L       +   + +R+   G+ P+ V+ N L++ FC   GV  A + +  +    
Sbjct: 377 LIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATG 436

Query: 153 FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFV 212
             PD++T   LI GLC  G+  EA+ LF    A  C P+VI     Y+ +I G CK   +
Sbjct: 437 CLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVIT----YSCLIGGFCKLERI 492

Query: 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK--------GNTSAALELHEEF 264
           +  R LF DM  + + PD   +++L+  YC A   +DA+         + S  +  +   
Sbjct: 493 DMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSL 552

Query: 265 VNGNGELGVI--------------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
           V+G  ++G +              C P+V++Y ++I++ C+      A  L  +M   G+
Sbjct: 553 VDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGV 612

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIE-SEGCIPDTSSYNTLINSYSKIEKVEEAL 369
            P+V+ Y SLI G+C  G +++ARK+   +E  E C  D  +Y  +++   +  ++  AL
Sbjct: 613 QPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAAL 672

Query: 370 SLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
            L   +   G  P +                       ++  L+ GLC+   L  A E+ 
Sbjct: 673 ELLEAIKQSGTPPRHD----------------------IYVALIRGLCQGKELGKAMEVL 710

Query: 430 KKLP-RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +++       PN   Y  +I  L  EG  E+A  L  ++
Sbjct: 711 EEMTLSRKSRPNAEAYEAVIQELAREGRHEEANALADEL 749



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 113/250 (45%), Gaps = 28/250 (11%)

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           +V +Y  +  +L +   +D+   +  +    GI P+V  Y+ +I G C  G +D A +L 
Sbjct: 23  NVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLDKACELL 82

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM------ISMGVRPDNSC----I 387
             +   G +PD + YN +I++  K     +AL  +  M      I+  +  D  C    +
Sbjct: 83  EEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNVITWTIMIDGLCKANRL 142

Query: 388 LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
            EA   F  +       +   +N L++G CK  ++  A+ L K++   G  PNVVTY+ +
Sbjct: 143 PEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTV 202

Query: 448 ICGLCIEGGIEKAYDLLPDMEEK----------------IRECL--KAIELLHKMAKRYV 489
           I G C +  ++ AY L   M E                  R  L  +A ELL +M +R +
Sbjct: 203 IHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGL 262

Query: 490 KPDEITVSIL 499
           +PD+ +   L
Sbjct: 263 QPDKFSYDTL 272



 Score = 45.1 bits (105), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%)

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
           F+ ++  +N L + L ++ R+     + K     G  PNV TY V+I GLC  G ++KA 
Sbjct: 20  FDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLDKAC 79

Query: 462 DLLPDMEE 469
           +LL +M E
Sbjct: 80  ELLEEMRE 87


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 122/398 (30%), Positives = 204/398 (51%), Gaps = 59/398 (14%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILR-KVFSPDVVTLGCLIRGLCMQGKFTEASG 178
           P+  + N+++N  CK    S A+  L  +   K  +PD+VT   +I G C QG+   A  
Sbjct: 39  PNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACE 98

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           +  + V    R  + P+V+ Y S++DGLC+DG +++   +  +MK +G+ PD F +++LI
Sbjct: 99  ILREMVT---RDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALI 155

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFV---------------------NGNGE-----LG 272
             +C A   ++A       L+L++E +                     +GN E     LG
Sbjct: 156 TGWCNARKVDEA-------LKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLG 208

Query: 273 VI----CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
           V+    C P+V++Y S+++ LCK   +D+A +LF  M S+G +P+VV Y++LI G C   
Sbjct: 209 VMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAH 268

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----- 383
           ++D AR L   + +  C PDT SYN L++ Y ++ ++EEA  L+ EM +    PD     
Sbjct: 269 KVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYT 328

Query: 384 -------NSCILEAAELFRTLHNTK----FELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
                  N+  LE A     L N K     + D+  ++ +V G  ++ R   A E  +++
Sbjct: 329 CLVRGFCNASRLEEARFL--LENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEM 386

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
                 PN VTY+ +I GLC  G ++ A ++L +M  K
Sbjct: 387 IARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNK 424



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/373 (29%), Positives = 182/373 (48%), Gaps = 30/373 (8%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L E +   G+ PD V+   +++  C+   +  A   +  +  K   PD  T   LI G C
Sbjct: 100 LREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWC 159

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
              K  EA  L+ + +      +  P+V+ Y ++IDG CK G + K   +   M+GR   
Sbjct: 160 NARKVDEALKLYKEILT---SSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCV 216

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           P+   Y+SL+   C A       G+   AL+L     +        C P+V++Y ++I+ 
Sbjct: 217 PNVVTYSSLLHGLCKA-------GDLDQALDLFRRMTSKG------CVPNVVTYTTLIHG 263

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           LC    VD A+ L  +M +    PD V Y++L+DGYC +GRI++A++LF  + ++ C+PD
Sbjct: 264 LCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPD 323

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEM-ISMGVRPD-------------NSCILEAAELF 394
             +Y  L+  +    ++EEA  L   M  + G+ PD                 +EAAE  
Sbjct: 324 RITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFI 383

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
           + +       +   ++ L+DGLCK+ R+  A E+ K +     EP+V T+  +I  LC  
Sbjct: 384 QEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRL 443

Query: 455 GGIEKAYDLLPDM 467
           G +++A+ LL  M
Sbjct: 444 GDMDEAWKLLVAM 456



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 113/443 (25%), Positives = 194/443 (43%), Gaps = 86/443 (19%)

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN 213
            P VVT   +I G C   +  +A   F K   F     V PN   Y  +++GLCK    +
Sbjct: 4   QPTVVTWTIIIDGFCKANQLKQALACFEKMREF-----VAPNERTYNVVVNGLCKARLTS 58

Query: 214 KVRVLFLDMK-GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
           K   +  +M+ G+ + PD   Y+++I  +C        +G    A E+  E V  +G   
Sbjct: 59  KAYEVLKEMRDGKSVAPDLVTYSTVINGFC-------KQGEMDRACEILREMVTRDG--- 108

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI---------------------- 310
               PDV++Y S+++ LC+D  +D+A E+  +MK +G+                      
Sbjct: 109 --IAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDE 166

Query: 311 --------------IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
                          PDVV Y++LIDG+C  G ++ A K+   +E   C+P+  +Y++L+
Sbjct: 167 ALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLL 226

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD---------NSCILEAAELFRTLHNTKFEL--- 404
           +   K   +++AL L+  M S G  P+           C     +  R L +        
Sbjct: 227 HGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCP 286

Query: 405 -DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D   +N L+DG C+  R+  A +LFK++      P+ +TYT ++ G C    +E+A  L
Sbjct: 287 PDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFL 346

Query: 464 LPDME-------------------EKIRECLKAIELLHKMAKRYVKPDEITVSILEELLN 504
           L +M+                    + +  ++A E + +M  R V P+ +T S L + L 
Sbjct: 347 LENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLC 406

Query: 505 KDENCHECMNLLPSFLSRNQEES 527
           K       M +L + +++  E S
Sbjct: 407 KAGRVDHAMEVLKNMVNKRVEPS 429



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 111/445 (24%), Positives = 187/445 (42%), Gaps = 84/445 (18%)

Query: 81  MQPTPFMPSFNSLL-GALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVS 139
           ++P  F  +F++L+ G    +K         E L +    PD V+   L++ FCK   + 
Sbjct: 144 VEPDKF--TFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLE 201

Query: 140 DAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI------ 193
            A   LG +  +   P+VVT   L+ GLC  G   +A  LF +  +  C PNV+      
Sbjct: 202 KAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLI 261

Query: 194 -------------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
                                    P+ + Y +++DG C+ G + + + LF +M  +   
Sbjct: 262 HGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCL 321

Query: 229 PDAFVYNSLIRVYCCAVNWEDAK------------------------GNTSA-----ALE 259
           PD   Y  L+R +C A   E+A+                        G + A     A E
Sbjct: 322 PDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAE 381

Query: 260 LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSS 319
             +E +  N        P+ ++Y S+I+ LCK   VD A E+  +M ++ + P V  ++S
Sbjct: 382 FIQEMIARN------VAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNS 435

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           +I   C +G +D+A KL V++ + G  P   +Y TL+  +S+  ++E A  L+  M    
Sbjct: 436 VIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVM---- 491

Query: 380 VRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
            R        AA L          +    F+ L+ GLCK+  +  A  + ++L     EP
Sbjct: 492 -RKKAKKSSSAANL----------VPEQAFSALIRGLCKAREIDKAMAVVEELRSRECEP 540

Query: 440 NVVTYTVMICGLCIEGGIEKAYDLL 464
                  ++ GL   G  E+A  L+
Sbjct: 541 AEEDCLAIVDGLLRAGRTEEAGKLI 565



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 114/246 (46%), Gaps = 50/246 (20%)

Query: 275 CHPDVLSYCSII----------------------------------NSLCKDVLVDKAKE 300
           C P V+++  II                                  N LCK  L  KA E
Sbjct: 3   CQPTVVTWTIIIDGFCKANQLKQALACFEKMREFVAPNERTYNVVVNGLCKARLTSKAYE 62

Query: 301 LFLDMK-SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS-IESEGCIPDTSSYNTLINS 358
           +  +M+  + + PD+V YS++I+G+C  G +D A ++    +  +G  PD  +Y ++++ 
Sbjct: 63  VLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDG 122

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDN---SCIL----------EAAELFR-TLHNTKFEL 404
             +  K++ A  +  EM   GV PD    S ++          EA +L++  L ++ ++ 
Sbjct: 123 LCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKP 182

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           D+  +  L+DG CKS  L  A ++   +      PNVVTY+ ++ GLC  G +++A DL 
Sbjct: 183 DVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLF 242

Query: 465 PDMEEK 470
             M  K
Sbjct: 243 RRMTSK 248



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 137/356 (38%), Gaps = 58/356 (16%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L+ AL  F  M      P + ++ +L+  L           L + +      PD VS N
Sbjct: 234 DLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYN 293

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ +C++  + +A      +  K   PD +T  CL+RG C   +  EA  L       
Sbjct: 294 ALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENM--- 350

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                + P+V+ Y+ ++ G  +     +      +M  R + P+A  Y+SLI   C A  
Sbjct: 351 KTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKA-- 408

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G    A+E+ +  VN   E      P V ++ S+I +LC+   +D+A +L + M 
Sbjct: 409 -----GRVDHAMEVLKNMVNKRVE------PSVGTFNSVIGALCRLGDMDEAWKLLVAMA 457

Query: 307 SRGIIPDVVVY------------------------------------------SSLIDGY 324
           + G+ P +V Y                                          S+LI G 
Sbjct: 458 AHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQAFSALIRGL 517

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           C    ID A  +   + S  C P       +++   +  + EEA  L   +  +G+
Sbjct: 518 CKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISKVGL 573



 Score = 45.8 bits (107), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 21/145 (14%)

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
           +  +  ++DG CK+ +L+ A   F+K+  +   PN  TY V++ GLC      KAY++L 
Sbjct: 7   VVTWTIIIDGFCKANQLKQALACFEKMREF-VAPNERTYNVVVNGLCKARLTSKAYEVLK 65

Query: 466 DMEE-------------------KIRECLKAIELLHKMAKR-YVKPDEITVSILEELLNK 505
           +M +                   K  E  +A E+L +M  R  + PD +T + + + L +
Sbjct: 66  EMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCR 125

Query: 506 DENCHECMNLLPSFLSRNQEESKLT 530
           D        ++     +  E  K T
Sbjct: 126 DGKMDRACEMVREMKLKGVEPDKFT 150


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 137/548 (25%), Positives = 237/548 (43%), Gaps = 110/548 (20%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A  F   M++    P   ++N+L+   +    +   + + + +    +LPD V+LN 
Sbjct: 272 MDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNT 331

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           LM   CK   + +A      +  K  +PDV +   ++ G   +G   + + LF   +   
Sbjct: 332 LMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDG 391

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
             P++                                P+V+ Y ++I  LC+ G ++   
Sbjct: 392 IAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAM 451

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
             F  M  +G+ PD + Y+ LI+ +C         G+   A EL  E +N    L     
Sbjct: 452 EKFNQMIDQGVVPDKYAYHCLIQGFC-------THGSLLKAKELISEIMNNGMRL----- 499

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
            D++ + SIIN+LCK   V  A+ +F    + G+ PD VVY+ L+DGYCL+G+++ A ++
Sbjct: 500 -DIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRV 558

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------- 383
           F ++ S G  P+   Y TL+N Y KI +++E LSL+ EM+  G++P              
Sbjct: 559 FDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFE 618

Query: 384 -----------------------------------NSCILEAAELFRTLHNTKFELDLTV 408
                                              N C  EA  LF+ L     ++D+  
Sbjct: 619 AGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIIT 678

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
            N ++ G+ ++ R+  A +LF  + R G  P  VTY++MI  L  EG +E+A D+   M+
Sbjct: 679 LNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSMQ 738

Query: 469 EK------------IRECLKAIEL------LHKMAKRYVKPDEITVSILEELLNKDENCH 510
                         +RE LK  E+      L K+ +R    + +T  +L +L +    C 
Sbjct: 739 NAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLFSSKGTCR 798

Query: 511 ECMNLLPS 518
           E +  LP+
Sbjct: 799 EQIRFLPA 806



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 120/450 (26%), Positives = 195/450 (43%), Gaps = 67/450 (14%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKM--IGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166
           L  R   +G +PD  S NIL+   C     G +D  + +      V SPDVV    +I G
Sbjct: 171 LLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDG 230

Query: 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
              +G   +A  LF + V    +  + P+++ Y+S++  LCK   ++K       M  +G
Sbjct: 231 FFKEGDVNKACDLFKEMV----QRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKG 286

Query: 227 IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE-----FVNGNGELGVIC------ 275
           + PD + YN+LI  Y     W++A        E+  +      V  N  +G +C      
Sbjct: 287 VLPDNWTYNNLIYGYSSTGQWKEA---VRVFKEMRRQSILPDVVALNTLMGSLCKYGKIK 343

Query: 276 --------------HPDVLSYCSIINSLC-KDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
                         +PDV SY  ++N    K  LVD   +LF  M   GI PD+  ++ L
Sbjct: 344 EARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMT-DLFDLMLGDGIAPDIYTFNVL 402

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           I  Y   G +D A  +F  +   G  P   +Y T+I +  +I K+++A+  + +MI  GV
Sbjct: 403 IKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGV 462

Query: 381 RPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
            PD             +  +L+A EL   + N    LD+  F  +++ LCK  R+  A  
Sbjct: 463 VPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQN 522

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA------------------YDLLPDMEE 469
           +F      G  P+ V Y +++ G C+ G +EKA                  Y  L +   
Sbjct: 523 IFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYC 582

Query: 470 KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           KI    + + L  +M ++ +KP  I  +I+
Sbjct: 583 KIGRIDEGLSLFREMLQKGIKPSTILYNII 612



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 170/365 (46%), Gaps = 29/365 (7%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAF-VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
           GL  D +  + L+  FC+     +A  + L R       PDV +   L++ LC QGK  +
Sbjct: 143 GLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQ 202

Query: 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
           A  L       +      P+V+ Y ++IDG  K+G VNK   LF +M  RGI PD   Y+
Sbjct: 203 ADDLLRMMA--EGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYS 260

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           S++   C A            A++  E F+      GV+  PD  +Y ++I         
Sbjct: 261 SVVHALCKA-----------RAMDKAEAFLRQMVNKGVL--PDNWTYNNLIYGYSSTGQW 307

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
            +A  +F +M+ + I+PDVV  ++L+   C  G+I +AR +F ++  +G  PD  SY  +
Sbjct: 308 KEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIM 367

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPD------------NSCILEAAE-LFRTLHNTKF 402
           +N Y+    + +   L+  M+  G+ PD            N  +L+ A  +F  + +   
Sbjct: 368 LNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGV 427

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
           +  +  +  ++  LC+  ++  A E F ++   G  P+   Y  +I G C  G + KA +
Sbjct: 428 KPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKE 487

Query: 463 LLPDM 467
           L+ ++
Sbjct: 488 LISEI 492



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 109/270 (40%), Gaps = 39/270 (14%)

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
           +  P   +Y  +++   +    + A   F  +   G+  D ++ S L+ G+C   R D+A
Sbjct: 108 VLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEA 167

Query: 334 RKLFVSIESE-GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392
             + +    E GC+PD  SYN L+ S     K  +A  L   M   G             
Sbjct: 168 LDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGG------------- 214

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
                  T    D+  +N ++DG  K   +  A +LFK++ + G  P++VTY+ ++  LC
Sbjct: 215 -------TVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALC 267

Query: 453 IEGGIEKAYDLLPDMEEK------------------IRECLKAIELLHKMAKRYVKPDEI 494
               ++KA   L  M  K                    +  +A+ +  +M ++ + PD +
Sbjct: 268 KARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVV 327

Query: 495 TVSILEELLNKDENCHECMNLLPSFLSRNQ 524
            ++ L   L K     E  ++  +   + Q
Sbjct: 328 ALNTLMGSLCKYGKIKEARDVFDTMAMKGQ 357


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 138/548 (25%), Positives = 236/548 (43%), Gaps = 110/548 (20%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A  F   M++    P   ++N+L+   +    +   + + + +    +LPD V+LN 
Sbjct: 272 MDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNT 331

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           LM   CK   + +A      +  K  +PDV +   ++ G   +G   + + LF   +   
Sbjct: 332 LMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDG 391

Query: 188 CRP-------------------------------NVIPNVICYASIIDGLCKDGFVNKVR 216
             P                                V P+V+ Y ++I  LC+ G ++   
Sbjct: 392 IAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAM 451

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
             F  M  +G+ PD + Y+ LI+ +C         G+   A EL  E +N    L     
Sbjct: 452 EKFNQMIDQGVVPDKYAYHCLIQGFC-------THGSLLKAKELISEIMNNGMRL----- 499

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
            D++ + SIIN+LCK   V  A+ +F    + G+ PD VVY+ L+DGYCL+G+++ A ++
Sbjct: 500 -DIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRV 558

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------- 383
           F ++ S G  P+   Y TL+N Y KI +++E LSL+ EM+  G++P              
Sbjct: 559 FDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFE 618

Query: 384 -----------------------------------NSCILEAAELFRTLHNTKFELDLTV 408
                                              N C  EA  LF+ L     ++D+  
Sbjct: 619 AGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIIT 678

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
            N ++ G+ ++ R+  A +LF  + R G  P  VTY++MI  L  EG +E+A D+   M+
Sbjct: 679 LNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQ 738

Query: 469 EK------------IRECLKAIEL------LHKMAKRYVKPDEITVSILEELLNKDENCH 510
                         +RE LK  E+      L K+ +R    + +T  +L +L +    C 
Sbjct: 739 NAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLFSSKGTCR 798

Query: 511 ECMNLLPS 518
           E +  LP+
Sbjct: 799 EQIRFLPA 806



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 119/450 (26%), Positives = 194/450 (43%), Gaps = 67/450 (14%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKM--IGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166
           L  R   +G +PD  S NIL+   C     G +D  + +      V SPDVV    +I G
Sbjct: 171 LLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDG 230

Query: 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
              +G   +A  LF + V    +  + P+++ Y+S++  LCK   ++K       M  +G
Sbjct: 231 FFKEGDVNKACDLFKEMV----QRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKG 286

Query: 227 IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE-----FVNGNGELGVIC------ 275
           + PD + YN+LI  Y     W++A        E+  +      V  N  +G +C      
Sbjct: 287 VLPDNWTYNNLIYGYSSTGQWKEA---VRVFKEMRRQSILPDVVALNTLMGSLCKYGKIK 343

Query: 276 --------------HPDVLSYCSIINSLC-KDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
                         +PDV SY  ++N    K  LVD   +LF  M   GI P +  ++ L
Sbjct: 344 EARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMT-DLFDLMLGDGIAPVICTFNVL 402

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           I  Y   G +D A  +F  +   G  P   +Y T+I +  +I K+++A+  + +MI  GV
Sbjct: 403 IKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGV 462

Query: 381 RPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
            PD             +  +L+A EL   + N    LD+  F  +++ LCK  R+  A  
Sbjct: 463 VPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQN 522

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA------------------YDLLPDMEE 469
           +F      G  P+ V Y +++ G C+ G +EKA                  Y  L +   
Sbjct: 523 IFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYC 582

Query: 470 KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           KI    + + L  +M ++ +KP  I  +I+
Sbjct: 583 KIGRIDEGLSLFREMLQKGIKPSTILYNII 612



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 169/365 (46%), Gaps = 29/365 (7%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAF-VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
           GL  D +  + L+  FC+     +A  + L R       PDV +   L++ LC QGK  +
Sbjct: 143 GLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQ 202

Query: 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
           A  L       +      P+V+ Y ++IDG  K+G VNK   LF +M  RGI PD   Y+
Sbjct: 203 ADDLLRMMA--EGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYS 260

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           S++   C A            A++  E F+      GV+  PD  +Y ++I         
Sbjct: 261 SVVHALCKA-----------RAMDKAEAFLRQMVNKGVL--PDNWTYNNLIYGYSSTGQW 307

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
            +A  +F +M+ + I+PDVV  ++L+   C  G+I +AR +F ++  +G  PD  SY  +
Sbjct: 308 KEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIM 367

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRP------------DNSCILEAAE-LFRTLHNTKF 402
           +N Y+    + +   L+  M+  G+ P             N  +L+ A  +F  + +   
Sbjct: 368 LNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGV 427

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
           +  +  +  ++  LC+  ++  A E F ++   G  P+   Y  +I G C  G + KA +
Sbjct: 428 KPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKE 487

Query: 463 LLPDM 467
           L+ ++
Sbjct: 488 LISEI 492



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 109/270 (40%), Gaps = 39/270 (14%)

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
           +  P   +Y  +++   +    + A   F  +   G+  D ++ S L+ G+C   R D+A
Sbjct: 108 VLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEA 167

Query: 334 RKLFVSIESE-GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392
             + +    E GC+PD  SYN L+ S     K  +A  L   M   G             
Sbjct: 168 LDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGG------------- 214

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
                  T    D+  +N ++DG  K   +  A +LFK++ + G  P++VTY+ ++  LC
Sbjct: 215 -------TVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALC 267

Query: 453 IEGGIEKAYDLLPDMEEK------------------IRECLKAIELLHKMAKRYVKPDEI 494
               ++KA   L  M  K                    +  +A+ +  +M ++ + PD +
Sbjct: 268 KARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVV 327

Query: 495 TVSILEELLNKDENCHECMNLLPSFLSRNQ 524
            ++ L   L K     E  ++  +   + Q
Sbjct: 328 ALNTLMGSLCKYGKIKEARDVFDTMAMKGQ 357


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 127/411 (30%), Positives = 197/411 (47%), Gaps = 49/411 (11%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+  + NIL+  FC +  +       G + R    P+VVT   LI   C  G+  EA GL
Sbjct: 8   PNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGL 67

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
                +      + PN+I Y  II+GLC++G + +   +  +M  +G  PD   YN+L+ 
Sbjct: 68  LKSMSS----KGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLN 123

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            YC        +GN   AL +H E V  NG       P V++Y ++INS+CK   +++A 
Sbjct: 124 GYC-------KEGNFHQALVIHAEMVR-NG-----VSPSVVTYTALINSMCKARNLNRAM 170

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           E F  M+ RG+ P+   Y++LIDG+   G +++A ++   +   G  P   +YN  I+ +
Sbjct: 171 EFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGH 230

Query: 360 SKIEKVEEALSLYGEMISMGVRPD---NSCILEA----AELFRTLHNTKFEL-------D 405
             +E++EEAL +  EM+  G+ PD    S I+       EL R     K E+       D
Sbjct: 231 CVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQ-MKQEMVEKGVSPD 289

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
              ++ L+ GLC+  RL  A +L +++   G  P+  TYT +I   C+EG + KA  L  
Sbjct: 290 AVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHD 349

Query: 466 DMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           +M             +HK       PD +T S+L   LNK     E   LL
Sbjct: 350 EM-------------IHKG----FLPDAVTYSVLINGLNKQARTREAKRLL 383



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 123/451 (27%), Positives = 207/451 (45%), Gaps = 54/451 (11%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           EL   L  F  M      P + ++N+L+ A            L + +++ G+ P+ +S N
Sbjct: 25  ELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYN 84

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +++N  C+   + +A+  L  +  K F+PD VT   L+ G C +G F +A  +  + V  
Sbjct: 85  VIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMV-- 142

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             R  V P+V+ Y ++I+ +CK   +N+    F  M+ RG+ P+   Y +LI  +     
Sbjct: 143 --RNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGL 200

Query: 247 WEDA--------KGNTSAALELHEEFVNGN-------GELGVICH-------PDVLSYCS 284
             +A        +   S ++  +  F++G+         LGV+         PDV+SY +
Sbjct: 201 LNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYST 260

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           II+  C+   +D+A ++  +M  +G+ PD V YSSLI G C M R+ +A  L   +   G
Sbjct: 261 IISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMG 320

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAA 391
             PD  +Y TLIN+Y     + +AL L+ EMI  G  PD              +   EA 
Sbjct: 321 LPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAK 380

Query: 392 E-LFRTLHNTKFELDLT----VFNC----------LVDGLCKSWRLRSAWELFKKLPRYG 436
             LF+ ++      D+T    + NC          L+ G C    +  A  +F+ +    
Sbjct: 381 RLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERN 440

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            +P    Y V+I G C  G + KA++L  +M
Sbjct: 441 HKPGEAVYNVIIHGHCRGGNLPKAFNLYKEM 471



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/410 (25%), Positives = 198/410 (48%), Gaps = 27/410 (6%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E   + AL     M+    +P + ++ +L+ ++   +     +   +++   GL P+  +
Sbjct: 128 EGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERT 187

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
              L++ F +   +++A+  L  +    FSP VVT    I G C+  +  EA G+  + V
Sbjct: 188 YTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMV 247

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
                  + P+V+ Y++II G C+ G +++   +  +M  +G+ PDA  Y+SLI+  C  
Sbjct: 248 ----EKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLC-- 301

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                     + A +L +E +    ++G+   PD  +Y ++IN+ C +  ++KA  L  +
Sbjct: 302 -----EMRRLTEACDLSQEML----DMGL--PPDEFTYTTLINAYCVEGDLNKALHLHDE 350

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M  +G +PD V YS LI+G     R  +A++L   +  E  +P   +Y+TLI + S IE 
Sbjct: 351 MIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIE- 409

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
            +  ++L       G+      + EA  +F ++     +    V+N ++ G C+   L  
Sbjct: 410 FKSVVALIKGFCMKGL------MHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPK 463

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC 474
           A+ L+K++   G  P+ VT   +I  L  EG  E+  +++ D    +R C
Sbjct: 464 AFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDT---LRSC 510



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 160/366 (43%), Gaps = 58/366 (15%)

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
           R  V PNV  Y  +I G C  G + K    F +M+  G  P+   YN+LI  YC     +
Sbjct: 3   RSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRID 62

Query: 249 DA----KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
           +A    K  +S  ++                 P+++SY  IIN LC++  + +A E+  +
Sbjct: 63  EAFGLLKSMSSKGMQ-----------------PNLISYNVIINGLCREGSMKEAWEILEE 105

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M  +G  PD V Y++L++GYC  G    A  +   +   G  P   +Y  LINS  K   
Sbjct: 106 MGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARN 165

Query: 365 VEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNC 411
           +  A+  + +M   G+RP+                + EA  +   +  + F   +  +N 
Sbjct: 166 LNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNA 225

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK- 470
            + G C   R+  A  + +++   G  P+VV+Y+ +I G C +G +++A+ +  +M EK 
Sbjct: 226 FIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKG 285

Query: 471 -----------------IRECLKAIELLHKMAKRYVKPDEITVSIL------EELLNKDE 507
                            +R   +A +L  +M    + PDE T + L      E  LNK  
Sbjct: 286 VSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKAL 345

Query: 508 NCHECM 513
           + H+ M
Sbjct: 346 HLHDEM 351



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 146/339 (43%), Gaps = 27/339 (7%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           LN+A    N M     +P + ++N+ +      +     + + + +   GL PD VS + 
Sbjct: 201 LNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYST 260

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           +++ FC+   +  AF     ++ K  SPD VT   LI+GLC   + TEA  L  + +   
Sbjct: 261 IISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDM- 319

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               + P+   Y ++I+  C +G +NK   L  +M  +G  PDA  Y+ LI       N 
Sbjct: 320 ---GLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLI-------NG 369

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCS---------IINSLCKDVLVDKA 298
            + +  T  A  L  + +        + +  ++  CS         +I   C   L+ +A
Sbjct: 370 LNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEA 429

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
             +F  M  R   P   VY+ +I G+C  G +  A  L+  +   G +P T +  TLI +
Sbjct: 430 DRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKA 489

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397
             K    EE   + G+ +        SC L  AEL + L
Sbjct: 490 LFKEGMNEEMSEVIGDTL-------RSCRLNEAELAKVL 521



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 110/230 (47%), Gaps = 41/230 (17%)

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           ++SR + P+V  Y+ LI G+C +G +      F  +E  GC+P+  +YNTLI++Y K+ +
Sbjct: 2   IRSR-VSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
           ++EA  L   M S G++P                      +L  +N +++GLC+   ++ 
Sbjct: 61  IDEAFGLLKSMSSKGMQP----------------------NLISYNVIINGLCREGSMKE 98

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE--------------- 469
           AWE+ +++   G  P+ VTY  ++ G C EG   +A  +  +M                 
Sbjct: 99  AWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALIN 158

Query: 470 ---KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
              K R   +A+E   +M  R ++P+E T + L +  ++    +E   +L
Sbjct: 159 SMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRIL 208


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 124/413 (30%), Positives = 200/413 (48%), Gaps = 30/413 (7%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           A   F  M      P   +F +L+ AL       + + L + +   G+ P  V+ N L+ 
Sbjct: 203 AFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIA 262

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
            F K+  + +A+  L  + R    PDVVT  CLI GL    +  EA  +  K     C  
Sbjct: 263 GFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCP- 321

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
              P+ I Y ++I+GL K G +N    LF  MK +G  PD   Y++LI     A   E  
Sbjct: 322 ---PDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVE-- 376

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
                +A  L EE  +      V   PD+ +YCSII  L K   VD A  LF +M+ +G+
Sbjct: 377 -----SACVLFEEMES------VGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGL 425

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
            PDV+ Y++ ++     GR  +ARK+F  ++  G +PD ++Y+ L+   SK ++V++A  
Sbjct: 426 SPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACG 485

Query: 371 LYGEMISMGVRPD----NSC---------ILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
           L  E+I  G   D    + C         + EA EL +  ++       + +N L+D L 
Sbjct: 486 LLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALA 545

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           K+ R+  A+   + L   G +P++V+Y+ +I  L   G I+ A++LL +M ++
Sbjct: 546 KAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKR 598



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 127/399 (31%), Positives = 188/399 (47%), Gaps = 30/399 (7%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142
           P+P + ++NSLL ALA          L E L      PD VS + L+N   +      A 
Sbjct: 5   PSPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAAL 64

Query: 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202
             +  +  K   P++ T   L+  L   G+F EA  L  +     C    +P+V  Y  +
Sbjct: 65  EVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGC----VPDVRTYNCL 120

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
           I  L K G +++   LF +M+ RG  PD F YNSLI  Y          G +  A+EL E
Sbjct: 121 ISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLI--YGLG-----KVGRSQKAMELLE 173

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
           E           C PDV++Y S+I  L KD    KA +LF +MK RG  PD + +++L+D
Sbjct: 174 EMERHG------CPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMD 227

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
                GR+DDA +L   ++  G  P   +YN LI  + K+  + EA +L  EM   G +P
Sbjct: 228 ALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKP 287

Query: 383 D---NSCIL----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
           D    SC++          EA ++ + +       D   +N L++GL K+  L  A  LF
Sbjct: 288 DVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLF 347

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
            ++   G  P+VVTY+ +I  L     +E A  L  +ME
Sbjct: 348 DRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEME 386



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 137/540 (25%), Positives = 231/540 (42%), Gaps = 86/540 (15%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           +K+G+ E  +A   F  +   + TP + S++ L+ +L     +   + +   +   G  P
Sbjct: 20  AKAGQCE--EAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKP 77

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           +  + N L++C  K     +A   L  +      PDV T  CLI  L   G+ +EA  LF
Sbjct: 78  NLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLF 137

Query: 181 TKFVAFDCRPNVI-------------------------------PNVICYASIIDGLCKD 209
            +     C P+                                 P+V+ Y+S+I GL KD
Sbjct: 138 AEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKD 197

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA--------KGNTSAALELH 261
           G   K   LF +MK RG  PD+  + +L+     A   +DA        +      +  +
Sbjct: 198 GETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTY 257

Query: 262 EEFVNGNGELGVI--------------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
              + G G++G +              C PDV++Y  +I  L K   +D+A ++   M+ 
Sbjct: 258 NALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEK 317

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            G  PD + Y++LI+G    G ++DA +LF  ++S+GC PD  +Y+TLI +  K  +VE 
Sbjct: 318 EGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVES 377

Query: 368 ALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           A  L+ EM S+G++PD                + +A  LF  +       D+  +N  ++
Sbjct: 378 ACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLN 437

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE----- 469
            L +  R + A ++F+ +   G  P+V TY  ++ GL     ++ A  LL ++ E     
Sbjct: 438 SLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAF 497

Query: 470 ---KIRECL----------KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
              K  ECL          +A ELL     + + P   + + L + L K     E  N L
Sbjct: 498 DSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTL 557



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 110/370 (29%), Positives = 167/370 (45%), Gaps = 57/370 (15%)

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN 213
           SP+VVT   L+  L   G+  EA  LF +  A        P+V+ Y+ +I+ L + G   
Sbjct: 6   SPNVVTYNSLLNALAKAGQCEEAQLLFEELKA----AKWTPDVVSYSCLINSLGRAGKWE 61

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
               +  +M+ +G  P+ + YN+L+     A       G    AL L  E  + NG    
Sbjct: 62  AALEVVAEMQAKGCKPNLWTYNTLVDCLGKA-------GQFDEALRLLAEMRD-NG---- 109

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
            C PDV +Y  +I++L K   + +A  LF +M+ RG +PD   Y+SLI G   +GR   A
Sbjct: 110 -CVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKA 168

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAEL 393
            +L   +E  GC PD  +Y++LI    K  +  +A  L+ EM   G +PD+         
Sbjct: 169 MELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDS--------- 219

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
                          F  L+D L K+ R+  A EL  ++   G +P VVTY  +I G   
Sbjct: 220 -------------ITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGK 266

Query: 454 EGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEIT 495
            G + +AY+LL +M+                   K  +  +A ++L KM K    PD IT
Sbjct: 267 VGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTIT 326

Query: 496 VSILEELLNK 505
            + L   L K
Sbjct: 327 YNTLINGLGK 336



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 107/423 (25%), Positives = 185/423 (43%), Gaps = 76/423 (17%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
            K+G V  +DAL   + M      P + ++N+L+         V    L + +   G  P
Sbjct: 230 GKAGRV--DDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKP 287

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           D V+ + L+    K   + +A   L ++ ++   PD +T   LI GL   G   +A  LF
Sbjct: 288 DVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLF 347

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            +  +  C P+V+     Y+++I  L K   V    VLF +M+  GI PD F Y S+I V
Sbjct: 348 DRMKSKGCNPDVV----TYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITV 403

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
              A   +DA         L  E + G G       PDV++Y + +NSL +     +A++
Sbjct: 404 LGKAGQVDDAD-------RLFSE-MRGKG-----LSPDVITYNAFLNSLGRGGRFKEARK 450

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGY------------------------------CL---- 326
           +F DMK  G++PDV  Y +L+ G                               CL    
Sbjct: 451 IFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILT 510

Query: 327 -MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
             G +D+A +L     S+G  P  SSYN LI++ +K  +V EA +   ++   G +P   
Sbjct: 511 SWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKP--- 567

Query: 386 CILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
                              D+  ++ L+  L ++ ++ +A+EL +++ + G + +  +Y+
Sbjct: 568 -------------------DIVSYSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRSYS 608

Query: 446 VMI 448
            ++
Sbjct: 609 NLV 611



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 142/330 (43%), Gaps = 87/330 (26%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           PNV+ Y S+++ L K G   + ++LF ++K                    A  W      
Sbjct: 7   PNVVTYNSLLNALAKAGQCEEAQLLFEELK--------------------AAKW------ 40

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
                                  PDV+SY  +INSL +    + A E+  +M+++G  P+
Sbjct: 41  ----------------------TPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKPN 78

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           +  Y++L+D     G+ D+A +L   +   GC+PD  +YN LI++  K  ++ EA +L+ 
Sbjct: 79  LWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFA 138

Query: 374 EMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
           EM   G  PD                         +N L+ GL K  R + A EL +++ 
Sbjct: 139 EMRERGCVPDT----------------------FTYNSLIYGLGKVGRSQKAMELLEEME 176

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDE 493
           R+G  P+V+TY+ +I GL  +G                 E +KA +L  +M +R  KPD 
Sbjct: 177 RHGCPPDVMTYSSLITGLGKDG-----------------ETVKAFKLFQEMKRRGRKPDS 219

Query: 494 ITVSILEELLNKDENCHECMNLLPSFLSRN 523
           IT + L + L K     + + LL     R 
Sbjct: 220 ITFTALMDALGKAGRVDDALELLDEMKERG 249



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 120/254 (47%), Gaps = 39/254 (15%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+V++Y S++N+L K    ++A+ LF ++K+    PDVV YS LI+     G+ + A ++
Sbjct: 7   PNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEV 66

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
              ++++GC P+  +YNTL++   K  + +EAL L  EM       DN C+         
Sbjct: 67  VAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEM------RDNGCVP-------- 112

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
                   D+  +NCL+  L K+ RL  A+ LF ++   G  P+  TY  +I GL     
Sbjct: 113 --------DVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLG---- 160

Query: 457 IEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                        K+    KA+ELL +M +    PD +T S L   L KD    +   L 
Sbjct: 161 -------------KVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLF 207

Query: 517 PSFLSRNQEESKLT 530
                R ++   +T
Sbjct: 208 QEMKRRGRKPDSIT 221


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 127/452 (28%), Positives = 212/452 (46%), Gaps = 56/452 (12%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           +  L  A  FF+ M+     P + ++N L+ AL G+ +    + +   +   G  P+ V+
Sbjct: 135 DASLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVT 194

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N L+  FC+   V  A   +  +      P++VT   ++ G+C  G+  +A  +F + V
Sbjct: 195 YNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMV 254

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
               +  + P+ + Y +++ G CK G  ++   +F +M  +GI PD   + SLI V C A
Sbjct: 255 ----KEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKA 310

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
            N E A G      E+ E  +  N           +++ ++I+  CK   +D A     +
Sbjct: 311 GNLERAVGLVR---EMRERGLQMNE----------ITFTALIDGFCKKGFLDDALLAVRE 357

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M+   I P VV Y++LI+GYC++GR+D+AR+L   +E++G  PD  +Y+T++++Y K   
Sbjct: 358 MRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGD 417

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
              A  L  +M+  GV P                      D   ++ L+  LC+  RL  
Sbjct: 418 THSAFQLNQQMLENGVLP----------------------DAITYSSLIRVLCEEKRLGD 455

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKM 484
           A  LFK +   G +P+ VTYT +I G C EG +E                 +A+ L  +M
Sbjct: 456 AHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVE-----------------RALSLHDEM 498

Query: 485 AKRYVKPDEITVSILEELLNKDENCHECMNLL 516
            K  V PD +T S+L   L+K     E   LL
Sbjct: 499 VKAGVLPDVVTYSVLINGLSKSARTKEAQRLL 530



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 119/397 (29%), Positives = 178/397 (44%), Gaps = 61/397 (15%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI----- 116
           ++GEV+  + L   + M      P + +FNS+          VN IC + R+        
Sbjct: 204 RAGEVDRAERL--VDMMREGGLKPNLVTFNSV----------VNGICKAGRMEDARKVFD 251

Query: 117 -----GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
                GL PD VS N L+  +CK+    +A      + RK   PDVVT   LI  +C  G
Sbjct: 252 EMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAG 311

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
               A GL  +         +  N I + ++IDG CK GF++   +   +M+   I P  
Sbjct: 312 NLERAVGLVREMR----ERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSV 367

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
             YN+LI  YC     ++A+           E V      GV   PDV++Y +I+++ CK
Sbjct: 368 VCYNALINGYCMVGRMDEAR-----------ELVREMEAKGV--KPDVVTYSTILSAYCK 414

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
           +     A +L   M   G++PD + YSSLI   C   R+ DA  LF ++ S G  PD  +
Sbjct: 415 NGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVT 474

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNC 411
           Y +LI+ + K   VE ALSL+ EM+  GV P                      D+  ++ 
Sbjct: 475 YTSLIDGHCKEGNVERALSLHDEMVKAGVLP----------------------DVVTYSV 512

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
           L++GL KS R + A  L  KL    P P  + Y  ++
Sbjct: 513 LINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALM 549



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 160/335 (47%), Gaps = 44/335 (13%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P+V+ Y +++  L  D  +   R  F  M   G+ P+ + YN L+R  C        +G+
Sbjct: 121 PSVLAYNAVLLAL-SDASLPSARRFFDSMLSDGVAPNVYTYNILVRALC-------GRGH 172

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
              AL +  +        G  C P+ ++Y +++ + C+   VD+A+ L   M+  G+ P+
Sbjct: 173 RKEALSVLRDM------RGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPN 226

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           +V ++S+++G C  GR++DARK+F  +  EG  PD  SYNTL+  Y K+    EALS++ 
Sbjct: 227 LVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFA 286

Query: 374 EMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           EM   G+ PD                +  A  L R +     +++   F  L+DG CK  
Sbjct: 287 EMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKG 346

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIEL 480
            L  A    +++ +   +P+VV Y  +I G C+ G +++A +L+ +ME K          
Sbjct: 347 FLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAK---------- 396

Query: 481 LHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
                   VKPD +T S +     K+ + H    L
Sbjct: 397 -------GVKPDVVTYSTILSAYCKNGDTHSAFQL 424



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 186/399 (46%), Gaps = 24/399 (6%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           ++AL  F  M      P + +F SL+  +         + L   +   GL  + ++   L
Sbjct: 279 HEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTAL 338

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           ++ FCK   + DA +A+  + +    P VV    LI G CM G+  EA  L  +  A   
Sbjct: 339 IDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEA--- 395

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
              V P+V+ Y++I+   CK+G  +    L   M   G+ PDA  Y+SLIRV C      
Sbjct: 396 -KGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLG 454

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
           DA          H  F N    + +   PD ++Y S+I+  CK+  V++A  L  +M   
Sbjct: 455 DA----------HVLFKN---MISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKA 501

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G++PDVV YS LI+G     R  +A++L   +  E  +P    Y+ L+      E ++  
Sbjct: 502 GVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAE-LKSV 560

Query: 369 LSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
           L+L       G+      + EA ++++++ +  + LD +V++ L+ G C+   +  A   
Sbjct: 561 LALLKGFCMKGL------MNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSF 614

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            K++ + G  PN  +   +I GL  +G + +A  ++  +
Sbjct: 615 HKQMLQCGFAPNSTSTISLIRGLFEKGMVVEADQVIQQL 653



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 135/359 (37%), Gaps = 55/359 (15%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+DAL     M   +  P +  +N+L+              L   +   G+ PD V+ + 
Sbjct: 348 LDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYST 407

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           +++ +CK      AF    ++L     PD +T   LIR LC + +  +A  LF   ++  
Sbjct: 408 ILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLG 467

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            +P+ +     Y S+IDG CK+G V +   L  +M   G+ PD   Y+ LI       N 
Sbjct: 468 LQPDEVT----YTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLI-------NG 516

Query: 248 EDAKGNTSAALEL-----HEEFVNGN------------GEL-------------GVICHP 277
                 T  A  L     HEE V  N             EL             G++   
Sbjct: 517 LSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEA 576

Query: 278 DVL--------------SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
           D +               Y  +I+  C++  V KA      M   G  P+     SLI G
Sbjct: 577 DKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISLIRG 636

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
               G + +A ++   + +   + D  +   LI+   K   V+  L +   M   G+ P
Sbjct: 637 LFEKGMVVEADQVIQQLLNCCSLADAEASKALIDLNLKEGNVDAVLDVLHGMARDGLLP 695



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 113/283 (39%), Gaps = 37/283 (13%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  L DA   F  MI +   P   ++ SL+     +      + L + +   G+LPD V+
Sbjct: 450 EKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVT 509

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            ++L+N   K     +A   L ++  +   P  +    L+R  C                
Sbjct: 510 YSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMR--C---------------- 551

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
              CR   + +V+   +++ G C  G +N+   ++  +  R    D  VY+ LI  +C  
Sbjct: 552 ---CRNAELKSVL---ALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHC-- 603

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                 +GN   AL  H++ +    + G    P+  S  S+I  L +  +V +A ++   
Sbjct: 604 -----REGNVMKALSFHKQML----QCGFA--PNSTSTISLIRGLFEKGMVVEADQVIQQ 652

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
           + +   + D     +LID     G +D    +   +  +G +P
Sbjct: 653 LLNCCSLADAEASKALIDLNLKEGNVDAVLDVLHGMARDGLLP 695


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 122/433 (28%), Positives = 215/433 (49%), Gaps = 52/433 (12%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILR-KVFSPDVVTLGCLIRGLCMQGKFTEASG 178
           P+  + N+++N  CK    S A+  L  +   K  +PD+VT   +I G C QG+   A  
Sbjct: 7   PNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACE 66

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           +  + V    R  + P+V+ Y S++DGLC+DG +++   +  +MK +G+ PD F +++LI
Sbjct: 67  ILREMVT---RDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALI 123

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
             +C A   ++       AL+L++E +  +      C  D +S  ++I  LC++  + +A
Sbjct: 124 TGWCNARKVDE-------ALKLYKEILTSS------CRLDAVSSSALITGLCRERRIGEA 170

Query: 299 KELFLDMKSR---GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
            ELF +M+ R      PDVV Y++LIDG+C  G ++ A K+   +E   C+P+  +Y++L
Sbjct: 171 YELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSL 230

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPD---------NSCILEAAELFRTLHN----TKF 402
           ++   K   +++AL L+  M S G  P+           C     +  R L +    T  
Sbjct: 231 LHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCC 290

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
             D   +N L+DG C+  R+  A +LFK++      P+ +TYT ++ G C    +E+A  
Sbjct: 291 PADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARF 350

Query: 463 LLPDME-------------------EKIRECLKAIELLHKMAKRYVKPDEITVSILEELL 503
           LL +M+                    + +  ++A E + +M  R V P+ +T S L + L
Sbjct: 351 LLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGL 410

Query: 504 NKDENCHECMNLL 516
            K    +  M +L
Sbjct: 411 CKAGRVNHAMEVL 423



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 118/452 (26%), Positives = 200/452 (44%), Gaps = 80/452 (17%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V+   L++ FCK   +  A   LG +  +   P+VVT   L+ GLC  G   +A  L
Sbjct: 187 PDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDL 246

Query: 180 FTKFVAFDCRPNVI-------------------------------PNVICYASIIDGLCK 208
           F +  +  C PNV+                                + + Y +++DG C+
Sbjct: 247 FRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCR 306

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
            G + + + LF +M  +   PD   Y  L+R +C A   E+A+            F+  N
Sbjct: 307 LGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEAR------------FLLEN 354

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
            +      PDV++Y  ++    +     +A E   +M +R + P+ V YSSLIDG C  G
Sbjct: 355 MKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAG 414

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL 388
           R++ A ++  +++     PD  +Y  +I      ++ EEAL+L  EM+            
Sbjct: 415 RVNHAMEVLKNVDK----PDVVTYTIVIEGLCGTDRTEEALTLLEEMV------------ 458

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
                     N + E  +  FN ++  LC+   +  AW+L   +  +G EP +VTYT ++
Sbjct: 459 ----------NKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLL 508

Query: 449 CGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMA-----KRYVKPDEI--TVSILEE 501
            G    G +E AY+L   M  K ++   A  L+ + A     +   K  EI   ++++EE
Sbjct: 509 EGFSRTGRMEIAYELFEVMRRKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEE 568

Query: 502 LLNKD-ENCHE-CMNLLPSFL--SRNQEESKL 529
           L +++ E   E C+ ++   L   R +E  KL
Sbjct: 569 LRSRECEPAEEDCLAIVDGLLRAGRTEEAGKL 600



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 166/346 (47%), Gaps = 47/346 (13%)

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK-GRGIYPDAFVYNSLIRVYCCAVNW 247
           R  V PN   Y  +++GLCK    +K   +  +M+ G+ + PD   Y+++I  +C     
Sbjct: 2   REFVAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFC----- 56

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
              +G    A E+  E V  +G       PDV++Y S+++ LC+D  +D+A E+  +MK 
Sbjct: 57  --KQGEMDRACEILREMVTRDG-----MAPDVVTYTSVVDGLCRDGKMDRACEMVREMKL 109

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           +G+ PD   +S+LI G+C   ++D+A KL+  I +  C  D  S + LI    +  ++ E
Sbjct: 110 KGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGE 169

Query: 368 ALSLYGEM------------ISMGVRPDNSC----ILEAAELFRTLHNTKFELDLTVFNC 411
           A  L+ EM            ++     D  C    + +A ++   +   K   ++  ++ 
Sbjct: 170 AYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSS 229

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE-- 469
           L+ GLCK+  L  A +LF+++   G  PNVVTYT +I GLC    ++ A  L+ +M    
Sbjct: 230 LLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATC 289

Query: 470 ----------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                           ++    +A +L  +MA +   PD IT + L
Sbjct: 290 CPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCL 335



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 104/422 (24%), Positives = 185/422 (43%), Gaps = 40/422 (9%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           KSG +E   A+     M   +  P + +++SLL  L         + L  R+ + G +P+
Sbjct: 201 KSGNLE--KAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPN 258

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+   L++  C    V  A + +  +       D V+   L+ G C  G+  EA  LF 
Sbjct: 259 VVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFK 318

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK-GRGIYPDAFVYNSLIRV 240
           +  A  C    +P+ I Y  ++ G C    + + R L  +MK   GI PD   Y+ ++  
Sbjct: 319 EMAAKSC----LPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAG 374

Query: 241 YCCAVNWEDAK--------GNTSAALELHEEFVNGNGELGVICH----------PDVLSY 282
           Y  A  + +A          N +     +   ++G  + G + H          PDV++Y
Sbjct: 375 YSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVDKPDVVTY 434

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
             +I  LC     ++A  L  +M ++ + P V  ++S+I   C +G +D+A KL V++ +
Sbjct: 435 TIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAA 494

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF 402
            G  P   +Y TL+  +S+  ++E A  L+ E++    +  +S    AA L         
Sbjct: 495 HGLEPGMVTYTTLLEGFSRTGRMEIAYELF-EVMRRKAKKSSS----AANL--------- 540

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
            +    F+ L+ GLCK+  +  A  + ++L     EP       ++ GL   G  E+A  
Sbjct: 541 -VPEQAFSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGK 599

Query: 463 LL 464
           L+
Sbjct: 600 LI 601



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 140/388 (36%), Gaps = 91/388 (23%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L+ AL  F  M      P + ++ +L+  L           L + +       D VS N
Sbjct: 239 DLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYN 298

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF------ 180
            L++ +C++  + +A      +  K   PD +T  CL+RG C   +  EA  L       
Sbjct: 299 ALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTA 358

Query: 181 --------------------------TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
                                      +F+      NV PN + Y+S+IDGLCK G VN 
Sbjct: 359 AGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNH 418

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
              +  ++      PD   Y  +I   C           T  AL L EE VN   E    
Sbjct: 419 AMEVLKNVD----KPDVVTYTIVIEGLC-------GTDRTEEALTLLEEMVNKRVE---- 463

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY----------------- 317
             P V ++ S+I +LC+   +D+A +L + M + G+ P +V Y                 
Sbjct: 464 --PSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAY 521

Query: 318 -------------------------SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
                                    S+LI G C    ID A  +   + S  C P     
Sbjct: 522 ELFEVMRRKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDC 581

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGV 380
             +++   +  + EEA  L   +  +G+
Sbjct: 582 LAIVDGLLRAGRTEEAGKLINSISKVGL 609


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 119/440 (27%), Positives = 216/440 (49%), Gaps = 50/440 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  PD V+ + +++  CK   V++A   +  +  K  +PDV T   ++  LC  GK  EA
Sbjct: 5   GFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEA 64

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             LF K +   C      N + Y ++I+GLCKD  + +   L  +M  +G  PD   YN+
Sbjct: 65  DELFHKMIERGCS----ANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNT 120

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           ++   C      +AK           +F +     G    PDV++Y  ++++L K+  V 
Sbjct: 121 ILSGLCRMGKVSEAK-----------QFFDSMPSRGY--SPDVVAYNGLLDALYKEGKVA 167

Query: 297 KAKELF--LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           +A  LF  +DM  R + PD++ Y++LIDG+C + + D+A KLF  + ++G +PDT +YN+
Sbjct: 168 EAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNS 227

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTK 401
           ++   ++   ++EA  ++ +M+  G  P+ +              +    EL+  +   +
Sbjct: 228 ILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKR 287

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
           F  D+ + N ++D LCK+ ++  A ++ +++ + G  P+VVTY +++ GLC    ++KA+
Sbjct: 288 FSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAH 347

Query: 462 DLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELL 503
           +L   M +                  K  +   A  L  +M +R + PD +T +IL + L
Sbjct: 348 ELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGL 407

Query: 504 NKDENCHECMNLLPSFLSRN 523
            K     E  +LL      N
Sbjct: 408 CKAGKLDEAKDLLDVMSEHN 427



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 127/437 (29%), Positives = 201/437 (45%), Gaps = 60/437 (13%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           ++G+V+  D L  F+ MI    +    ++N+L+  L   +       L E + + G  PD
Sbjct: 57  RAGKVDEADEL--FHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPD 114

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            ++ N +++  C+M  VS+A      +  + +SPDVV    L+  L  +GK  EA GLF 
Sbjct: 115 NITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFK 174

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
                D +  V P++I Y ++IDG C+    ++   LF D+  +G  PD   YNS++   
Sbjct: 175 TMDMADRK--VAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGL 232

Query: 242 CCAVNWEDAK----------------------------GNTSAALELHEEFVNGNGELGV 273
               N ++A+                            GN +  LEL+EE          
Sbjct: 233 ARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKR----- 287

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
              PDVL   ++I+ LCK   VD A ++  +M   G +PDVV Y+ L+DG C    +D A
Sbjct: 288 -FSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKA 346

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAEL 393
            +LF ++   GC PD  SY+ ++N   K  KV +A  L+  MI   + P           
Sbjct: 347 HELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVP----------- 395

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
                      D+  FN L+DGLCK+ +L  A +L   +  +   P+ VT T ++ GLC 
Sbjct: 396 -----------DVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCR 444

Query: 454 EGGIEKAYDLLPDMEEK 470
           +   ++A  L   M EK
Sbjct: 445 DKRTDEAVRLFQYMVEK 461



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 117/457 (25%), Positives = 212/457 (46%), Gaps = 55/457 (12%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIG--LLPDFVS 124
           ++++A  FF+ M     +P + ++N LL AL  +        L + ++     + PD ++
Sbjct: 130 KVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLIT 189

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N L++ FC++    +A      ++ K + PD VT   ++ GL  +    EA  +F K V
Sbjct: 190 YNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMV 249

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
              C     PN   Y+ ++ G C+ G + +   L+ +M  +   PD  + N++I + C A
Sbjct: 250 DSGC----APNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKA 305

Query: 245 VNWEDAKG-------------------------NTSAALELHEEFVN--GNGELGVICHP 277
              +DA                            T+   + HE F     NG     C P
Sbjct: 306 KKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNG-----CAP 360

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           D++SY  ++N LCK   V  A+ LF  M  R ++PDVV ++ L+DG C  G++D+A+ L 
Sbjct: 361 DIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLL 420

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG----VRPDN--------- 384
             +     +PD  +  TL++   + ++ +EA+ L+  M+  G    V P N         
Sbjct: 421 DVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCRE 480

Query: 385 SCILEAAELFRTL--HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
             + +A   F+++   + +F  D+  +  LV+ L ++ R+  A + F+++   G  P+ V
Sbjct: 481 GKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYV 540

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEEK--IRECLKA 477
            Y  ++ GL  +G   +A  L   M+EK  + +C KA
Sbjct: 541 AYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSDCFKA 577



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 115/470 (24%), Positives = 213/470 (45%), Gaps = 46/470 (9%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + ++++++  L         + + E +   G+ PD  +  I+++  C+   V +A   
Sbjct: 8   PDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADEL 67

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
             +++ +  S + V    LI GLC       A  L  +  +        P+ I Y +I+ 
Sbjct: 68  FHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMAS----KGYEPDNITYNTILS 123

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           GLC+ G V++ +  F  M  RG  PD   YN L+            +G  + A  L +  
Sbjct: 124 GLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALY-------KEGKVAEAWGLFKTM 176

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
              + ++     PD+++Y ++I+  C+    D+A +LF D+ ++G +PD V Y+S++ G 
Sbjct: 177 DMADRKVA----PDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGL 232

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD- 383
                +D+A ++F  +   GC P+ ++Y+ +++ + ++  +   L LY EM      PD 
Sbjct: 233 ARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDV 292

Query: 384 ---NSCI--LEAAELFRTLHNTKFEL-------DLTVFNCLVDGLCKSWRLRSAWELFKK 431
              N+ I  L  A+     H    E+       D+  +N L+DGLCK+  +  A ELF  
Sbjct: 293 LLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFST 352

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRE 473
           +   G  P++V+Y+V++ GLC    +  A  L   M E                  K  +
Sbjct: 353 MVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGK 412

Query: 474 CLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
             +A +LL  M++  V PD +T + L   L +D+   E + L    + + 
Sbjct: 413 LDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKG 462



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 107/232 (46%), Gaps = 28/232 (12%)

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M  +G  PDVV YS++I G C  G++ +A ++   +  +G  PD ++Y  +++   +  K
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 365 VEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNC 411
           V+EA  L+ +MI  G   +             +  I  A +L   + +  +E D   +N 
Sbjct: 61  VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNT 120

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI 471
           ++ GLC+  ++  A + F  +P  G  P+VV Y  ++  L  EG + +A+ L   M+   
Sbjct: 121 ILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMD--- 177

Query: 472 RECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
                       MA R V PD IT + L +   + E   E M L    +++ 
Sbjct: 178 ------------MADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKG 217



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 121/278 (43%), Gaps = 36/278 (12%)

Query: 55  KYLSENSKSGEVE-------LNDALC----------FFNYMIHMQPTPFMPSFNSLLGAL 97
           K L E SK G V        L D LC           F+ M+     P + S++ +L  L
Sbjct: 313 KVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGL 372

Query: 98  AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDV 157
                  +   L +R+    L+PD V+ NILM+  CK   + +A   L  +      PD 
Sbjct: 373 CKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDG 432

Query: 158 VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRV 217
           VT   L+ GLC   +  EA  LF   V      +V+P+ I    ++ GLC++G + +  +
Sbjct: 433 VTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNI----VLAGLCREGKLAQALL 488

Query: 218 LFLDM-KGRGIY-PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
            F  M K  G + PD   Y +L+     A       G    A++  ++ + G+G     C
Sbjct: 489 FFKSMVKSDGEFSPDVVTYTTLVNALIEA-------GRVDQAVDYFQQ-MTGSG-----C 535

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
            PD ++Y +++N L K     +A  L   MK +G + D
Sbjct: 536 APDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSD 573


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/334 (32%), Positives = 178/334 (53%), Gaps = 32/334 (9%)

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           + R++ K   PD+VT G ++ GLC +G    A  L  K      +  + P V+ Y +IID
Sbjct: 4   IDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKME----QGKLEPGVLIYNTIID 59

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           GLCK   ++    LF +M+ +GI P+   Y+SLI   C    W DA    S  +E     
Sbjct: 60  GLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK--- 116

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
                      +PDV ++ ++I++  K+  + +A++L+ +M  R I P +V YSSLI+G+
Sbjct: 117 ----------INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGF 166

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM--------- 375
           C+  R+D+A+++F  + S+ C PD  +YNTLI  + K ++VEE + ++ EM         
Sbjct: 167 CMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNT 226

Query: 376 -----ISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
                +  G+     C + A E+F+ + +     ++  +N L+DGLCK+ +L  A  +F+
Sbjct: 227 VTYNILIQGLFQAGDCDM-AQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFE 285

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            L R   EP + TY +MI G+C  G +E  +DL 
Sbjct: 286 YLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF 319



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 190/406 (46%), Gaps = 41/406 (10%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G+ +L  A    N M   +  P +  +N+++  L   K+  + + L + + T G+ P+
Sbjct: 28  KRGDTDL--AFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPN 85

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+ + L++C C     SDA   L  ++ +  +PDV T   LI     +GK  EA  L+ 
Sbjct: 86  VVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYD 145

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           + V    + ++ P+++ Y+S+I+G C    +++ + +F  M  +  +PD   YN+LI+ +
Sbjct: 146 EMV----KRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGF 201

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C    ++  +       E+ +  + GN           ++Y  +I  L +    D A+E+
Sbjct: 202 C---KYKRVEEGMEVFREMSQRGLVGN----------TVTYNILIQGLFQAGDCDMAQEI 248

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F +M S G+ P+++ Y++L+DG C  G+++ A  +F  ++     P   +YN +I    K
Sbjct: 249 FKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCK 308

Query: 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
             KVE+   L+  +   GV+P                      D+  +N ++ G C+   
Sbjct: 309 AGKVEDGWDLFCNLSLKGVKP----------------------DVVAYNTMISGFCRKGS 346

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
              A  LFK++   G  PN   Y  +I     +G  E + +L+ +M
Sbjct: 347 KEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEM 392



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 138/303 (45%), Gaps = 37/303 (12%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL----- 119
           E +L +A   ++ M+     P + +++SL          +N  C+ +RL+    +     
Sbjct: 134 EGKLVEAEKLYDEMVKRSIDPSIVTYSSL----------INGFCMHDRLDEAKQMFEFMV 183

Query: 120 -----PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFT 174
                PD V+ N L+  FCK   V +       + ++    + VT   LI+GL   G   
Sbjct: 184 SKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCD 243

Query: 175 EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVY 234
            A  +F + V+      V PN++ Y +++DGLCK+G + K  V+F  ++   + P  + Y
Sbjct: 244 MAQEIFKEMVS----DGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTY 299

Query: 235 NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294
           N +I   C A   ED            + F N + + GV   PDV++Y ++I+  C+   
Sbjct: 300 NIMIEGMCKAGKVEDG----------WDLFCNLSLK-GV--KPDVVAYNTMISGFCRKGS 346

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
            ++A  LF +MK  G +P+   Y++LI      G  + + +L   + S G   D S+   
Sbjct: 347 KEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGL 406

Query: 355 LIN 357
           + N
Sbjct: 407 VTN 409


>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
 gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
          Length = 813

 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 133/542 (24%), Positives = 244/542 (45%), Gaps = 97/542 (17%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A      M+     P   ++NSL+   +    +   + +S+++ + G+LPD V+LN 
Sbjct: 267 MDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNS 326

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           LM   CK   + DA      +  K    D+ +   ++ G   +G   + + LF   ++  
Sbjct: 327 LMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLS-- 384

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               + P+   +  +I    K G +++  ++F +M+ +G+ PD   Y+++I   C     
Sbjct: 385 --DGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKM 442

Query: 248 EDA--------KGNTSAALELHEEFVNG---NGEL-------------GVICHPDVLSYC 283
           +DA            + ++  +   + G   +G+L             G+   PD+  + 
Sbjct: 443 DDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGM--RPDIGCFN 500

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
            IIN+LCK   V  A+ +F    S G+ P+V+VY++L+DGYCL+G++++A ++F  + S 
Sbjct: 501 FIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSA 560

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------------- 383
           G  P+   Y TL+N Y K+ +++E LSL+ E++  G++P                     
Sbjct: 561 GIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGRTVPA 620

Query: 384 ----------------------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDG 415
                                       NSC  EA  LF+ LH    ++D+T  N ++ G
Sbjct: 621 KVKFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMNVKIDITTLNIMIAG 680

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------ 469
           + +  R+  A +LF  + R G  P+VVTY++M+  L  EG +E+A D+   ME       
Sbjct: 681 MFQIRRVEEAKDLFASISRSGLVPSVVTYSIMMTNLIKEGLVEEADDMFSSMENAGCEQP 740

Query: 470 -------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                        + RE ++A   L K+ +R    D  T ++L +L +    C E +  L
Sbjct: 741 NSQLLNHVVRELLEKREIVRAGTYLSKIDERSFSLDHSTTTLLIDLFSSKGTCREHIRFL 800

Query: 517 PS 518
           P+
Sbjct: 801 PA 802



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 170/400 (42%), Gaps = 60/400 (15%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           L P   +  ILM+C  +           G++L+     D + +  L+RGLC   +  EA 
Sbjct: 104 LSPTLHTYGILMDCCTRAHRPKLTLAFFGQVLKTGLGIDTIMISNLLRGLCEAKRTAEAL 163

Query: 178 G-LFTKFVAFDCRPNV---------------------------------IPNVICYASII 203
             L  +     C P+V                                 +PN + Y ++I
Sbjct: 164 DILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAEGGAVCLPNAVAYNTVI 223

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
           DG  K+G VNK   LF +M  RGI PD   YN ++   C A            A++  E 
Sbjct: 224 DGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKA-----------RAMDKAEA 272

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
            +    + GV+  PD  +Y S+I          +A  +   M S+GI+PDVV  +SL+  
Sbjct: 273 ILRQMVDKGVL--PDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMAS 330

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            C  G+I DAR +F S+  +G   D  SY  ++N Y+    + +   L+  M+S G+ PD
Sbjct: 331 LCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPD 390

Query: 384 N-------------SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
           +               +  A  +F  +     E D+  ++ ++  LC+  ++  A E F 
Sbjct: 391 SHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFN 450

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           ++   G  P++ TY  +I G C  G + KA DL+  M  K
Sbjct: 451 QMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNK 490



 Score = 42.4 bits (98), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 43/167 (25%)

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406
           P   +Y  L++  ++  + +  L+ +G+++  G+                       +D 
Sbjct: 106 PTLHTYGILMDCCTRAHRPKLTLAFFGQVLKTGL----------------------GIDT 143

Query: 407 TVFNCLVDGLCKSWRLRSAWE-LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
            + + L+ GLC++ R   A + L  ++P  G  P+V +Y +++  LC +    +A +LL 
Sbjct: 144 IMISNLLRGLCEAKRTAEALDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLR 203

Query: 466 DMEEKIRECL--------------------KAIELLHKMAKRYVKPD 492
            M E    CL                    KA +L ++M +R + PD
Sbjct: 204 MMAEGGAVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPD 250


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 129/411 (31%), Positives = 190/411 (46%), Gaps = 63/411 (15%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++NSL+ A     Y    + +   +   GL PD  + N+LMN F K   V   +     +
Sbjct: 91  AYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEM 150

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
             +  SP+V+T   LI  +C  G   +A  +F    +  CRPN+      Y S+IDGL K
Sbjct: 151 QNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFT----YTSMIDGLGK 206

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE----- 263
            G V+K   LF +M   G+     VYNSLI       +     G   AA +L  E     
Sbjct: 207 SGHVDKAFFLFEEMTSEGLVATRVVYNSLI-------HGLGRSGRADAAAKLFREMLSKG 259

Query: 264 ----------FVNGNGELG--------------VICHPDVLSYCSIINSLCKDVLVDKAK 299
                      V G G  G              V C  DV  Y  +I++LCK   +D+A 
Sbjct: 260 LQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAW 319

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           E+F +++  G++PDV  +++L+DG C  GRI DA  L   ++  GC PD + YNTLI+  
Sbjct: 320 EIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGL 379

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            K  +VEEA  L  EM S+G  P                      D+  +N L+D  CK 
Sbjct: 380 RKSGRVEEAGQLLLEMQSLGYEP----------------------DVVTYNTLIDESCKG 417

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            R+  A  LF+++   G   N VTY  ++ GLC+ G +++AY L   M+++
Sbjct: 418 GRIEDALRLFEEISAKGF-ANTVTYNTILNGLCMAGRVDEAYKLFNGMKQE 467



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 121/269 (44%), Gaps = 28/269 (10%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIGL 118
            +SG  +   A   F  M+     P   +F SL+  L  AG+      I    R   +G 
Sbjct: 240 GRSGRADA--AAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEAR--DVGC 295

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
             D    N+L++  CK   + +A+   G +      PDV T   L+ GLC  G+  +A  
Sbjct: 296 ALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFI 355

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           L         R    P+V  Y ++IDGL K G V +   L L+M+  G  PD   YN+LI
Sbjct: 356 LLGDMK----RAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLI 411

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
              C     EDA       L L EE ++  G        + ++Y +I+N LC    VD+A
Sbjct: 412 DESCKGGRIEDA-------LRLFEE-ISAKG------FANTVTYNTILNGLCMAGRVDEA 457

Query: 299 KELFLDMKSR---GII-PDVVVYSSLIDG 323
            +LF  MK     G+I PD V Y++L++G
Sbjct: 458 YKLFNGMKQETVDGVIDPDFVTYTTLLNG 486



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 129/276 (46%), Gaps = 31/276 (11%)

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
           G  C     +Y S+I++  K     KA  ++  M   G+ PD   ++ L++ +    R+D
Sbjct: 82  GHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVD 141

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------- 383
              KLF  ++++ C P+  +Y+ LI++  K   VE+AL ++ +M S G RP+        
Sbjct: 142 SVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMI 201

Query: 384 -----NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
                +  + +A  LF  + +        V+N L+ GL +S R  +A +LF+++   G +
Sbjct: 202 DGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQ 261

Query: 439 PNVVTYTVMICGLCIEGGIEKA------------------YDLLPDMEEKIRECLKAIEL 480
           P+ VT+T ++ GL + G   +A                  Y++L D   K +   +A E+
Sbjct: 262 PDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEI 321

Query: 481 LHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
             ++ +  + PD  T + L + L K    H+   LL
Sbjct: 322 FGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILL 357



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 23/165 (13%)

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
           KSR I+   + +  L  GY   G ++ + +    +E   C    S+YN+LI+++ K    
Sbjct: 47  KSRYILQPRI-FIELARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYT 105

Query: 366 EEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
           ++AL++Y  M   G+RPD                         FN L++   K+ R+ S 
Sbjct: 106 QKALAVYRVMGQSGLRPDT----------------------YTFNVLMNAFKKAKRVDSV 143

Query: 426 WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           W+LF+++      PNV+TY+++I  +C  GG+EKA  +  DM+ +
Sbjct: 144 WKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSR 188


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 131/464 (28%), Positives = 218/464 (46%), Gaps = 66/464 (14%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL--PDFVSLNIL 128
           AL  F  +  +   P + +FN+LL  L  +        +SE L+    +  P+ V+   L
Sbjct: 34  ALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDR------VSEALDLFHQMCKPNVVTFTTL 87

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           MN  C+   V +A   L R++     P+ +T G ++ G+C  G    A  L  K      
Sbjct: 88  MNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEL-- 145

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
             ++ P+V+ Y++IIDGL KDG     + LF++M+ +GI+PD   Y+ +I  +C +  W 
Sbjct: 146 -SHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWS 204

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
           +A+        L E  V           PDV+++  +IN+L K+  ++ A++L  +M S 
Sbjct: 205 EAQ------RLLQEMLVRK-------ISPDVVTFSGLINALVKEGDLNSAQDLLQEMISS 251

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE-----------GCIPDTSSYNTLIN 357
           G+ P+VV  ++L+DG C  G++ DA ++F +++             G  PD  +YN LI+
Sbjct: 252 GVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILIS 311

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFEL 404
                 K  EA  LY EM   G+ PD              S + EA ++F ++ +  F  
Sbjct: 312 GLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSP 371

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           ++  FN L+ G CK+  +    ELF ++ R G   N +TY  +I G    G I  + D  
Sbjct: 372 NIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLD-- 429

Query: 465 PDMEEKIRECLKAIELLHKMAKRYVKPDEITV-SILEELLNKDE 507
                          +  +M    V PD IT+ ++L  L +K+E
Sbjct: 430 ---------------IFQEMISSGVYPDTITIRNMLTGLWSKEE 458



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 113/374 (30%), Positives = 188/374 (50%), Gaps = 44/374 (11%)

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           D  S NIL+ CFC    +  A    G++ +  F P +VT   L+ GLC++ + +EA  LF
Sbjct: 14  DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF 73

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            +     C+PNV+     + ++++GLC++G V +   L   M   G+ P+   Y +++  
Sbjct: 74  HQM----CKPNVVT----FTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDG 125

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
            C         G+T +AL L  +      EL  I  PDV+ Y +II+ L KD     A+ 
Sbjct: 126 MC-------KMGDTVSALNLLRKM----EELSHI-KPDVVIYSAIIDGLWKDGRHTDAQN 173

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           LF++M+ +GI PD+V YS +I+G+C  G+  +A++L   +      PD  +++ LIN+  
Sbjct: 174 LFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALV 233

Query: 361 KIEKVEEALSLYGEMISMGVRP-------------DNSCILEAAELFRTLHNTKFELDLT 407
           K   +  A  L  EMIS GV P             D+  + +A E+F+ +  +  ++D T
Sbjct: 234 KEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDAT 293

Query: 408 -----------VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
                       +N L+ GL    +   A EL++++P  G  P+ VTY+ MI GLC +  
Sbjct: 294 HAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSR 353

Query: 457 IEKAYDLLPDMEEK 470
           +++A  +   M  K
Sbjct: 354 LDEATQMFDSMGSK 367



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/427 (25%), Positives = 193/427 (45%), Gaps = 64/427 (14%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           + H    P + +F +L+  L  +   V  + L +R+   GL P+ ++   +++  CKM  
Sbjct: 72  LFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKM-- 129

Query: 138 VSDAFVALGRILRKV-----FSPDVVTLGCLIRGLCMQGKFTEAS---------GLFTKF 183
             D   AL  +LRK+       PDVV    +I GL   G+ T+A          G+F   
Sbjct: 130 -GDTVSAL-NLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDI 187

Query: 184 VAFDCRPN----------------------VIPNVICYASIIDGLCKDGFVNKVRVLFLD 221
           V + C  N                      + P+V+ ++ +I+ L K+G +N  + L  +
Sbjct: 188 VTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQE 247

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
           M   G+ P+    N+L+   C +   +DA     A  +   +    +   GV   PDV +
Sbjct: 248 MISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGV--EPDVQT 305

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y  +I+ L  +    +A+EL+ +M  RGI+PD V YSS+I+G C   R+D+A ++F S+ 
Sbjct: 306 YNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMG 365

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK 401
           S+   P+  ++NTLI  Y K   V++ L L+ EM   G+  +    +     FR + N  
Sbjct: 366 SKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNIN 425

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
             LD                      +F+++   G  P+ +T   M+ GL  +  ++KA 
Sbjct: 426 GSLD----------------------IFQEMISSGVYPDTITIRNMLTGLWSKEELKKAL 463

Query: 462 DLLPDME 468
            +L +++
Sbjct: 464 AMLEELQ 470



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 20/136 (14%)

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
           H  +   D+  FN L+   C   +L  A   F KL + G  P +VT+  ++ GLC+E  +
Sbjct: 7   HGLQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRV 66

Query: 458 EKAYDLLPDM-----------------EEKIRECLKAIELLHKMAKRYVKPDEITVSILE 500
            +A DL   M                 E ++ E   A+ LL +M +  ++P++IT   + 
Sbjct: 67  SEALDLFHQMCKPNVVTFTTLMNGLCREGRVVE---AVALLDRMVEDGLQPNQITYGTIV 123

Query: 501 ELLNKDENCHECMNLL 516
           + + K  +    +NLL
Sbjct: 124 DGMCKMGDTVSALNLL 139


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 131/464 (28%), Positives = 218/464 (46%), Gaps = 66/464 (14%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL--PDFVSLNIL 128
           AL  F  +  +   P + +FN+LL  L  +        +SE L+    +  P+ V+   L
Sbjct: 34  ALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDR------VSEALDLFHQMCKPNVVTFTTL 87

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           MN  C+   V +A   L R++     P+ +T G ++ G+C  G    A  L  K      
Sbjct: 88  MNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEL-- 145

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
             ++ P+V+ Y++IIDGL KDG     + LF++M+ +GI+PD   Y+ +I  +C +  W 
Sbjct: 146 -SHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWS 204

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
           +A+        L E  V           PDV+++  +IN+L K+  ++ A++L  +M S 
Sbjct: 205 EAQ------RLLQEMLVRK-------ISPDVVTFSGLINALVKEGDLNSAQDLLQEMISS 251

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE-----------GCIPDTSSYNTLIN 357
           G+ P+VV  ++L+DG C  G++ DA ++F +++             G  PD  +YN LI+
Sbjct: 252 GVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILIS 311

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFEL 404
                 K  EA  LY EM   G+ PD              S + EA ++F ++ +  F  
Sbjct: 312 GLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSP 371

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           ++  FN L+ G CK+  +    ELF ++ R G   N +TY  +I G    G I  + D  
Sbjct: 372 NIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLD-- 429

Query: 465 PDMEEKIRECLKAIELLHKMAKRYVKPDEITV-SILEELLNKDE 507
                          +  +M    V PD IT+ ++L  L +K+E
Sbjct: 430 ---------------IFQEMISSGVYPDTITIRNMLTGLWSKEE 458



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 113/374 (30%), Positives = 188/374 (50%), Gaps = 44/374 (11%)

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           D  S NIL+ CFC    +  A    G++ +  F P +VT   L+ GLC++ + +EA  LF
Sbjct: 14  DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF 73

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            +     C+PNV+     + ++++GLC++G V +   L   M   G+ P+   Y +++  
Sbjct: 74  HQM----CKPNVVT----FTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDG 125

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
            C         G+T +AL L  +      EL  I  PDV+ Y +II+ L KD     A+ 
Sbjct: 126 MC-------KMGDTVSALNLLRKM----EELSHI-KPDVVIYSAIIDGLWKDGRHTDAQN 173

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           LF++M+ +GI PD+V YS +I+G+C  G+  +A++L   +      PD  +++ LIN+  
Sbjct: 174 LFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALV 233

Query: 361 KIEKVEEALSLYGEMISMGVRP-------------DNSCILEAAELFRTLHNTKFELDLT 407
           K   +  A  L  EMIS GV P             D+  + +A E+F+ +  +  ++D T
Sbjct: 234 KEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDAT 293

Query: 408 -----------VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
                       +N L+ GL    +   A EL++++P  G  P+ VTY+ MI GLC +  
Sbjct: 294 HAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSR 353

Query: 457 IEKAYDLLPDMEEK 470
           +++A  +   M  K
Sbjct: 354 LDEATQMFDSMGSK 367



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 109/427 (25%), Positives = 193/427 (45%), Gaps = 64/427 (14%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           + H    P + +F +L+  L  +   V  + L +R+   GL P+ ++   +++  CKM  
Sbjct: 72  LFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKM-- 129

Query: 138 VSDAFVALGRILRKV-----FSPDVVTLGCLIRGLCMQGKFTEAS---------GLFTKF 183
             D   AL  +LRK+       PDVV    +I GL   G+ T+A          G+F   
Sbjct: 130 -GDTVSAL-NLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDI 187

Query: 184 VAFDCRPN----------------------VIPNVICYASIIDGLCKDGFVNKVRVLFLD 221
           V + C  N                      + P+V+ ++ +I+ L K+G +N  + L  +
Sbjct: 188 VTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQE 247

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
           M   G+ P+    N+L+   C +   +DA     A  +   +    +   GV   PDV +
Sbjct: 248 MISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGV--EPDVQT 305

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y  +I+ L  +    +A+EL+ +M  RGI+PD V YSS+I+G C   R+D+A ++F S+ 
Sbjct: 306 YNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMG 365

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK 401
           S+   P+  ++NTLI  Y K   V++ L L+ EM   G+  +    +     FR + N  
Sbjct: 366 SKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNIN 425

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
             LD                      +F+++   G  P+ +T   M+ GL  +  +++A 
Sbjct: 426 GSLD----------------------IFQEMISSGVYPDTITIRNMLTGLWSKEELKRAL 463

Query: 462 DLLPDME 468
            +L +++
Sbjct: 464 AMLEELQ 470



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 20/136 (14%)

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
           H  +   D+  FN L+   C   +L  A   F KL + G  P +VT+  ++ GLC+E  +
Sbjct: 7   HGLQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRV 66

Query: 458 EKAYDLLPDM-----------------EEKIRECLKAIELLHKMAKRYVKPDEITVSILE 500
            +A DL   M                 E ++ E   A+ LL +M +  ++P++IT   + 
Sbjct: 67  SEALDLFHQMCKPNVVTFTTLMNGLCREGRVVE---AVALLDRMVEDGLQPNQITYGTIV 123

Query: 501 ELLNKDENCHECMNLL 516
           + + K  +    +NLL
Sbjct: 124 DGMCKMGDTVSALNLL 139


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/387 (29%), Positives = 178/387 (45%), Gaps = 62/387 (16%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           ER+   G  PD  + ++++   C+M  +  AF  L +   + F P+V     L R  C  
Sbjct: 149 ERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKT 208

Query: 171 GKFTEASGLFTKFVAFD-----------CRPN----------------VIPNVICYASII 203
           G+  +A  +F    + D           CR N                V P+V  Y  +I
Sbjct: 209 GRLKDALEIFRNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILI 268

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
           DGLCK    +K   +  +M  RG+ PD   +NS++   C A  +E A    +   E +  
Sbjct: 269 DGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERN-- 326

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
                      C P   +Y ++I+ LCK   VD+AK+L  +  S G +PDVV YS L DG
Sbjct: 327 -----------CRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADG 375

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            C  GRID+A +L   +  +GC P+  +YNTLI+   K  K E+A  L   ++S G  P 
Sbjct: 376 LCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVP- 434

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                                D+  +  +VDGLCK  RL  A ++ + + + G  P+V+T
Sbjct: 435 ---------------------DVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVIT 473

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEK 470
           YT ++ GLC  G +++A+ +  +M  K
Sbjct: 474 YTALMEGLCRTGRVDEAHHIFKEMVSK 500



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 117/441 (26%), Positives = 203/441 (46%), Gaps = 61/441 (13%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L + ++  G  P+ V+ N L++  CK      A+  L  ++   F PDVVT   ++ GLC
Sbjct: 388 LVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLC 447

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
            +G+  +A  +    +   C     P+VI Y ++++GLC+ G V++   +F +M  +   
Sbjct: 448 KEGRLDKALKMVEGMLKRGC----TPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCT 503

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
            DA  Y SL+  YC +   ++A           ++ V+G     +   P +  Y ++++ 
Sbjct: 504 ADALAYVSLVNGYCKSSRTKEA-----------QKVVDG-----IRGTPYIDVYNALMDG 547

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
            CK+  +D+   +F DM  RG +P++  Y+ ++DG C  G++D+A     S+ S GC+PD
Sbjct: 548 YCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPD 607

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTV 408
             SYN +I+   K  K +EA  +  +MI  G+ P                      D   
Sbjct: 608 VVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPP----------------------DAVT 645

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM- 467
           +N L+   CK  R   A  + K + + G +P+ VTY  +I GL     +  AY+L+ +M 
Sbjct: 646 YNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEML 705

Query: 468 ----------------EEKIRE-CLK-AIELLHKMAKRYVKPDEITVSILEELLNKDENC 509
                           +   +E CLK A+ L+  M    V+ + +T +I  + L K+   
Sbjct: 706 RNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRL 765

Query: 510 HECMNLLPSFLSRNQEESKLT 530
            E  +LL    +   E S  T
Sbjct: 766 DEASSLLSEMDTLRDEVSYTT 786



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 101/420 (24%), Positives = 186/420 (44%), Gaps = 71/420 (16%)

Query: 81  MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSD 140
           ++ TP++  +N+L+     +        + E +   G +P+  + NI+M+  CK   V +
Sbjct: 532 IRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDE 591

Query: 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200
           AF  L  +      PDVV+   +I GL    K  EA  +  + +    +  + P+ + Y 
Sbjct: 592 AFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMI----QAGIPPDAVTYN 647

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL 260
           +++   CK+   +    +  +M   G+ PD   YN+LI      ++  +  G+   A EL
Sbjct: 648 TLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLIS----GLSQTNRLGD---AYEL 700

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
             E +  NG +   C     +Y +II+ LCK+  + +A  L   M   G+  + V Y+  
Sbjct: 701 MHEMLR-NGCVVSAC----TTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIF 755

Query: 321 IDGYCLMGRIDDARKLFVSIES---------------------------------EGCIP 347
           ID  C  GR+D+A  L   +++                                 +G   
Sbjct: 756 IDRLCKEGRLDEASSLLSEMDTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCI 815

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLT 407
            + ++N LI++++K ++++EAL+L G M+  G  P                       + 
Sbjct: 816 TSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPS----------------------VI 853

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            +N ++  LCK  ++  AWELF ++   G   + V+YTV+I GLC +G  ++A  +L +M
Sbjct: 854 TYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEM 913



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 141/344 (40%), Gaps = 27/344 (7%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G+V+  +A  F   M      P + S+N ++  L           + +++   G+ PD
Sbjct: 585 KHGKVD--EAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPD 642

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+ N LM  FCK     DA   L  +++    PD VT   LI GL    +  +A  L  
Sbjct: 643 AVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMH 702

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           + +   C   V+     Y +IID LCK+G + +  +L   M G G+  +   YN  I   
Sbjct: 703 EMLRNGC---VVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRL 759

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCS----------------- 284
           C     ++A    S    L +E       +G +C  + L   S                 
Sbjct: 760 CKEGRLDEASSLLSEMDTLRDEVSYTTVIIG-LCKAEQLDRASKLAREMVAVKGLCITSH 818

Query: 285 ----IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
               +I++  K   +D+A  L   M  RG  P V+ Y+ +I   C + ++D A +LF  +
Sbjct: 819 TFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEM 878

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
              G +  + SY  LI       + +EAL +  EM S     D+
Sbjct: 879 AVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEIDD 922



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 111/258 (43%), Gaps = 27/258 (10%)

Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
           + +L ++   D+   +F  M   G  PD   Y  +I   C M +ID A  +    +  G 
Sbjct: 132 LQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGF 191

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL---------EAAELFRT 396
            P+ S Y  L  ++ K  ++++AL ++  + S      N+ I           A E  + 
Sbjct: 192 KPEVSVYTILTRAFCKTGRLKDALEIFRNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKE 251

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           ++  K   D+  +N L+DGLCK+ +   A E+  ++   G  P+ VT+  ++ GLC  G 
Sbjct: 252 MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 311

Query: 457 IEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSI 498
            E+A+ LL  M E                  K +   +A +L+ +       PD +T SI
Sbjct: 312 FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSI 371

Query: 499 LEELLNKDENCHECMNLL 516
           L + L K     E   L+
Sbjct: 372 LADGLCKRGRIDEAFELV 389


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 131/445 (29%), Positives = 209/445 (46%), Gaps = 49/445 (11%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           S+NS++  L GK        L E +   GL+PD V+ N L+N FCK   +    V L  +
Sbjct: 279 SYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEM 338

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
           + K  SP+VVT   LI  +C  G  + A  +F +      RPN       Y ++IDG C+
Sbjct: 339 VGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNER----TYTTLIDGFCQ 394

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
            G +N+   +  +M   G  P    YN+L+  YC     ++A G            + G 
Sbjct: 395 KGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVG-----------ILRGM 443

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
            E G+   PDV+SY ++I   C++  + KA ++  +M  +G++PD V YSSLI G CL  
Sbjct: 444 VERGLP--PDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQ 501

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---S 385
           ++ +A  LF  +   G  PD  +Y +LIN+Y    ++ +AL L+ EM+  G  PDN   S
Sbjct: 502 KLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYS 561

Query: 386 CILEAAE-----------LFRTLHNTKFELDLT----VFNC----------LVDGLCKSW 420
            ++               L +  +      D+T    + NC          LV G C   
Sbjct: 562 VLINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKG 621

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC--LKAI 478
            +  A  +FK + +   +PN   Y +MI G    G + KAY+L  ++E     C  +  I
Sbjct: 622 LMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYMELEHSSFACHTVAVI 681

Query: 479 ELLHKMAKRYVKPDEITVSILEELL 503
            L+  +A+  +  DE++  +L+ +L
Sbjct: 682 ALVKALAREGMN-DELS-RLLQNIL 704



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/472 (25%), Positives = 220/472 (46%), Gaps = 58/472 (12%)

Query: 46  TVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVN 105
           TV     +L  L   S S   + +DA   F  M+    +P + ++N ++  +  +     
Sbjct: 166 TVLSYNAVLDALLRRSSSNHRDYDDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEK 225

Query: 106 FICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165
            +    ++   G+ P+ V+ N L++  CK   V +A   L  +     + ++++   +I 
Sbjct: 226 GLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVIN 285

Query: 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225
           GLC +G+ +E   L  +         ++P+ + Y ++++G CK+G +++  VL  +M G+
Sbjct: 286 GLCGKGRMSEVGELVEEMRG----KGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGK 341

Query: 226 GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF-VNGNGELGVICHPDVLSYCS 284
           G+ P+   Y +LI   C A       GN S A+E+ ++  V G         P+  +Y +
Sbjct: 342 GLSPNVVTYTTLINCMCKA-------GNLSRAVEIFDQMRVRG-------LRPNERTYTT 387

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           +I+  C+  L+++A ++  +M   G  P VV Y++L+ GYC +GR+ +A  +   +   G
Sbjct: 388 LIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERG 447

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL 404
             PD  SY+T+I  + +  ++ +A  +  EM+  GV PD                     
Sbjct: 448 LPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDT-------------------- 487

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
               ++ L+ GLC   +L  A++LF+++ R G  P+ VTYT +I   C++G         
Sbjct: 488 --VTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDG--------- 536

Query: 465 PDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                   E  KA+ L  +M +R   PD +T S+L   LNK         LL
Sbjct: 537 --------ELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLL 580



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 167/378 (44%), Gaps = 49/378 (12%)

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNK-----VRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
           R    P V+ Y +++D L +    N         +F DM   G+ P+ + YN +IR    
Sbjct: 160 RHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERVFRDMVRNGVSPNVYTYNVIIRGVVS 219

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
             + E   G           F+    + G+   P+V++Y ++I++ CK   V +A  L  
Sbjct: 220 QGDLEKGLG-----------FMRKMEKEGI--SPNVVTYNTLIDASCKKKKVKEAMALLR 266

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            M   G+  +++ Y+S+I+G C  GR+ +  +L   +  +G +PD  +YNTL+N + K  
Sbjct: 267 AMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEG 326

Query: 364 KVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFN 410
            + + L L  EM+  G+ P+                +  A E+F  +       +   + 
Sbjct: 327 NLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYT 386

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            L+DG C+   +  A+++  ++   G  P+VVTY  ++ G C  G +++A  +L  M E+
Sbjct: 387 TLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVER 446

Query: 471 I------------------RECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHEC 512
                              RE  KA ++  +M ++ V PD +T S L + L   +   E 
Sbjct: 447 GLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEA 506

Query: 513 MNLLPSFLSRNQEESKLT 530
            +L    + R     ++T
Sbjct: 507 FDLFREMMRRGLPPDEVT 524


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/401 (30%), Positives = 197/401 (49%), Gaps = 57/401 (14%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  PD  + N L+N  CK+     A   +  +L     PD+ T   LI GLC  G+  EA
Sbjct: 303 GFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEA 362

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             +  + V+ DC PN +     Y +II  LCK+  V++   +   +  +GI PD   +NS
Sbjct: 363 VKILDQMVSRDCSPNAV----TYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNS 418

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI+  C + N +       +A++L EE + G G     C PD  +Y  +I+SLC    ++
Sbjct: 419 LIQGLCLSSNHK-------SAMDLFEE-MKGKG-----CRPDEFTYNMLIDSLCSSRKLE 465

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A  L  +M+  G   +VV+Y++LIDG+C   RI++A ++F  +E +G   D+ +YNTLI
Sbjct: 466 EALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLI 525

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           +   K ++VE+A  L  +MI  G+RPD                 KF      +N L+   
Sbjct: 526 DGLCKSKRVEDAAQLMDQMIMEGLRPD-----------------KF-----TYNSLLTHF 563

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK------ 470
           CK+  ++ A ++ + +   G  P++VTY  +I GLC  G ++ A  LL  ++ K      
Sbjct: 564 CKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTP 623

Query: 471 ------IRECLK------AIELLHKMAKRYVKPDEITVSIL 499
                 I+   K      A+ L  +M  +   PD IT  I+
Sbjct: 624 HAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIV 664



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 119/392 (30%), Positives = 187/392 (47%), Gaps = 30/392 (7%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           +FN L+ AL         I + E + + GL PD  +   +M  + +   +  A     ++
Sbjct: 205 TFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQM 264

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
           +        VT+  LI G C QG+  +A     + V+   R    P+   Y ++++GLCK
Sbjct: 265 VEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFR----PDQFTYNTLVNGLCK 320

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
            G       +   M   G+ PD + YNSLI   C         G    A+++ ++ V+ +
Sbjct: 321 IGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLC-------KLGEIEEAVKILDQMVSRD 373

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                 C P+ ++Y +II+SLCK+  VD+A E+   + S+GI+PDV  ++SLI G CL  
Sbjct: 374 ------CSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSS 427

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----- 383
               A  LF  ++ +GC PD  +YN LI+S     K+EEAL+L  EM   G   +     
Sbjct: 428 NHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYN 487

Query: 384 --------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
                   N  I EA E+F  +       D   +N L+DGLCKS R+  A +L  ++   
Sbjct: 488 TLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIME 547

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           G  P+  TY  ++   C  G I+KA D++  M
Sbjct: 548 GLRPDKFTYNSLLTHFCKTGDIKKAADIVQTM 579



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 149/322 (46%), Gaps = 19/322 (5%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K GE+E  +A+   + M+    +P   ++N+++ +L  +        ++  L + G+LPD
Sbjct: 355 KLGEIE--EAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPD 412

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             + N L+   C       A      +  K   PD  T   LI  LC   K  EA  L  
Sbjct: 413 VCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLK 472

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           +     C      NV+ Y ++IDG CK+  + +   +F +M+ +G+  D+  YN+LI   
Sbjct: 473 EMELNGC----ARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGL 528

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C +   EDA      A  + +  + G         PD  +Y S++   CK   + KA ++
Sbjct: 529 CKSKRVEDA------AQLMDQMIMEG-------LRPDKFTYNSLLTHFCKTGDIKKAADI 575

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
              M S G  PD+V Y++LI G C  GR+  A +L  SI+ +G +    +YN +I +  K
Sbjct: 576 VQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFK 635

Query: 362 IEKVEEALSLYGEMISMGVRPD 383
             +  EA+ L+ EM+     PD
Sbjct: 636 RNRTHEAMRLFREMLDKSEPPD 657



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 167/373 (44%), Gaps = 44/373 (11%)

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
           R  +  +V  +  +I  LCK   V    ++  +M   G+ PD   + ++++ Y       
Sbjct: 196 RRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYI------ 249

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
              GN   AL + E+ V    E G  C  DV +   +IN  CK   +D+A     +  S 
Sbjct: 250 -EGGNLDGALRIKEQMV----EYGCPC-TDV-TVNVLINGFCKQGRIDQALSFIQEAVSE 302

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G  PD   Y++L++G C +G    A ++  ++   G  PD  +YN+LI+   K+ ++EEA
Sbjct: 303 GFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEA 362

Query: 369 LSLYGEMISMGVRPD----NSCIL---------EAAELFRTLHNTKFELDLTVFNCLVDG 415
           + +  +M+S    P+    N+ I          EA E+ R L +     D+  FN L+ G
Sbjct: 363 VKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQG 422

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------ 469
           LC S   +SA +LF+++   G  P+  TY ++I  LC    +E+A +LL +ME       
Sbjct: 423 LCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARN 482

Query: 470 ------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLP 517
                       K +   +A E+  +M  + V  D +T + L + L K +   +   L+ 
Sbjct: 483 VVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMD 542

Query: 518 SFLSRNQEESKLT 530
             +       K T
Sbjct: 543 QMIMEGLRPDKFT 555



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 98/395 (24%), Positives = 164/395 (41%), Gaps = 80/395 (20%)

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK------GRGIY-------------- 228
           +PN +P+   Y  I+  L K G    +R +  +MK       RGI+              
Sbjct: 90  QPNFVPSSSVYEEILRKLGKAGSFEYMRRVLEEMKLSGCEFDRGIFLIFVESYGKFELYD 149

Query: 229 ----------------PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
                           PD   YN L+ V   A   +  +   S+ +              
Sbjct: 150 EVVGIVKVMEDEYRIKPDTRFYNVLLNVLVDANKLKLVESAHSSMVRRR----------- 198

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
            I H DV ++  +I +LCK   V  A  +  +M S G+ PD   +++++ GY   G +D 
Sbjct: 199 -IRH-DVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDG 256

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCI- 387
           A ++   +   GC     + N LIN + K  ++++ALS   E +S G RPD    N+ + 
Sbjct: 257 ALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVN 316

Query: 388 --------LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
                     A E+   +     + D+  +N L+ GLCK   +  A ++  ++      P
Sbjct: 317 GLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSP 376

Query: 440 NVVTYTVMICGLCIEGGIEKAYD---------LLPDM---EEKIRE-CL-----KAIELL 481
           N VTY  +I  LC E  +++A +         +LPD+      I+  CL      A++L 
Sbjct: 377 NAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLF 436

Query: 482 HKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
            +M  +  +PDE T ++L + L       E +NLL
Sbjct: 437 EEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLL 471



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 136/314 (43%), Gaps = 18/314 (5%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + +FNSL+  L     + + + L E +   G  PD  + N+L++  C    + +A   
Sbjct: 411 PDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNL 470

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           L  +     + +VV    LI G C   +  EA  +F +         V  + + Y ++ID
Sbjct: 471 LKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMEL----QGVSRDSVTYNTLID 526

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           GLCK   V     L   M   G+ PD F YNSL+  +C         G+   A ++ +  
Sbjct: 527 GLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFC-------KTGDIKKAADIVQTM 579

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
            +        C+PD+++Y ++I+ LCK   V  A  L   ++ +G++     Y+ +I   
Sbjct: 580 TSSG------CNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQAL 633

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY-SKIEKVEEALSLYGEMISMGVRPD 383
               R  +A +LF  +  +   PD  +Y  +     +    + EA+    EMI  G  P+
Sbjct: 634 FKRNRTHEAMRLFREMLDKSEPPDAITYKIVYRGLCNGGGPIGEAVDFTVEMIERGNIPE 693

Query: 384 NSCILEAAELFRTL 397
            S  +  AE   TL
Sbjct: 694 FSSFVMLAEGLCTL 707



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 78/165 (47%), Gaps = 15/165 (9%)

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
           K    +P   VY  ++      G  +  R++   ++  GC  D   +   + SY K E  
Sbjct: 89  KQPNFVPSSSVYEEILRKLGKAGSFEYMRRVLEEMKLSGCEFDRGIFLIFVESYGKFELY 148

Query: 366 EEALSLYGEM-ISMGVRPDN-------SCILEA--AELFRTLHNT----KFELDLTVFNC 411
           +E + +   M     ++PD        + +++A   +L  + H++    +   D++ FN 
Sbjct: 149 DEVVGIVKVMEDEYRIKPDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRIRHDVSTFNI 208

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           L+  LCK+ ++R A  + +++P YG  P+  T+T ++ G  IEGG
Sbjct: 209 LIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGY-IEGG 252


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/449 (27%), Positives = 207/449 (46%), Gaps = 51/449 (11%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +N   + PD  + NIL++  CK      A   L  ++ +  +PD VT   ++ GLC  GK
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
           F  A  L       +CRP+       Y ++I GLCK   V++ + L  +    G  PD  
Sbjct: 61  FERAHSLLAVMAERNCRPSCCT----YNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVV 116

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            Y+ L    C        +G    A EL +E ++GNG     C P++++Y ++I+ LCK 
Sbjct: 117 TYSILADGLC-------KRGRIDEAFELVKE-MSGNG-----CTPNLVTYNTLIDGLCKA 163

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
              +KA EL   + S G +PDVV Y+ ++DG C  GR+D A K+   +   GC P   +Y
Sbjct: 164 SKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITY 223

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHN 399
             L+    +  +V+EA  ++ EM+S     D             +S   EA ++   +  
Sbjct: 224 TALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRG 283

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
           T +   + V+N L+DG CK  RL     +F+ +   G  PN+ TY +++ GLC  G +++
Sbjct: 284 TPY---IDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDE 340

Query: 460 AYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEE 501
           A+  L  M                    K  +  +A ++L +M +  + PD +T + L  
Sbjct: 341 AFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMA 400

Query: 502 LLNKDENCHECMNLLPSFLSRNQEESKLT 530
              K+E   + + +L + +    +   +T
Sbjct: 401 QFCKEERFDDAVGILKNMIKAGVDPDNVT 429



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/441 (26%), Positives = 203/441 (46%), Gaps = 61/441 (13%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L + ++  G  P+ V+ N L++  CK      A+  L  ++   F PDVVT   ++ GLC
Sbjct: 137 LVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLC 196

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
            +G+  +A  +    +   C P+VI     Y ++++GLC+ G V++   +F +M  +   
Sbjct: 197 KEGRLDKALKMVEGMLKRGCTPSVIT----YTALMEGLCRTGRVDEAHHIFKEMVSKDCT 252

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
            DA  Y SL+  YC +   ++A           ++ V+G     +   P +  Y ++++ 
Sbjct: 253 ADALAYVSLVNGYCKSSRTKEA-----------QKVVDG-----IRGTPYIDVYNALMDG 296

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
            CK+  +D+   +F DM  RG +P++  Y+ ++DG C  G++D+A     S+ S GC+PD
Sbjct: 297 YCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPD 356

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTV 408
             SYN +I+   K  K +EA  +  +MI  G+ P                      D   
Sbjct: 357 VVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPP----------------------DAVT 394

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM- 467
           +N L+   CK  R   A  + K + + G +P+ VTY  +I GL     +  AY+L+ +M 
Sbjct: 395 YNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEML 454

Query: 468 ----------------EEKIRE-CLK-AIELLHKMAKRYVKPDEITVSILEELLNKDENC 509
                           +   +E CLK A+ L+  M    V+ + +T +I  + L K+   
Sbjct: 455 RNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRL 514

Query: 510 HECMNLLPSFLSRNQEESKLT 530
            E  +LL    +   E S  T
Sbjct: 515 DEASSLLSEMDTLRDEVSYTT 535



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 104/401 (25%), Positives = 188/401 (46%), Gaps = 33/401 (8%)

Query: 81  MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSD 140
           ++ TP++  +N+L+     +        + E +   G +P+  + NI+M+  CK   V +
Sbjct: 281 IRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDE 340

Query: 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200
           AF  L  +      PDVV+   +I GL    K  EA  +  + +    +  + P+ + Y 
Sbjct: 341 AFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMI----QAGIPPDAVTYN 396

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL 260
           +++   CK+   +    +  +M   G+ PD   YN+LI      ++  +  G+   A EL
Sbjct: 397 TLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLIS----GLSQTNRLGD---AYEL 449

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
             E +  NG +   C     +Y +II+ LCK+  + +A  L   M   G+  + V Y+  
Sbjct: 450 MHEMLR-NGCVVSAC----TTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIF 504

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG- 379
           ID  C  GR+D+A  L   +++   + D  SY T+I    K E+++ A  L  EM+++  
Sbjct: 505 IDRLCKEGRLDEASSLLSEMDT---LRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKG 561

Query: 380 ---VRPDNSCILEAAELFRTLHNTKFELDLTV----------FNCLVDGLCKSWRLRSAW 426
                   + +++A    + L      L+L V          +N ++  LCK  ++  AW
Sbjct: 562 LCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAW 621

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           ELF ++   G   + V+YTV+I GLC +G  ++A  +L +M
Sbjct: 622 ELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEM 662



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 141/344 (40%), Gaps = 27/344 (7%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G+V  ++A  F   M      P + S+N ++  L           + +++   G+ PD
Sbjct: 334 KHGKV--DEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPD 391

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+ N LM  FCK     DA   L  +++    PD VT   LI GL    +  +A  L  
Sbjct: 392 AVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMH 451

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           + +   C   V+     Y +IID LCK+G + +  +L   M G G+  +   YN  I   
Sbjct: 452 EMLRNGC---VVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRL 508

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCS----------------- 284
           C     ++A    S    L +E       +G +C  + L   S                 
Sbjct: 509 CKEGRLDEASSLLSEMDTLRDEVSYTTVIIG-LCKAEQLDRASKLAREMVAVKGLCITSH 567

Query: 285 ----IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
               +I++  K   +D+A  L   M  RG  P V+ Y+ +I   C + ++D A +LF  +
Sbjct: 568 TFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEM 627

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
              G +  + SY  LI       + +EAL +  EM S     D+
Sbjct: 628 AVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEIDD 671



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 135/319 (42%), Gaps = 30/319 (9%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALA-----GKKYYVNFICLSERLNTIGLL 119
           E   +DA+     MI     P   ++N+L+  L+     G  Y +    + E L    ++
Sbjct: 405 EERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYEL----MHEMLRNGCVV 460

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
               + N +++  CK   +  A + +  +       + VT    I  LC +G+  EAS L
Sbjct: 461 SACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSL 520

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG-RGIYPDAFVYNSLI 238
            ++        + + + + Y ++I GLCK   +++   L  +M   +G+   +  +N LI
Sbjct: 521 LSEM-------DTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLI 573

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
             +      ++A       L L E  V         C P V++Y  +I  LCK   VDKA
Sbjct: 574 DAFTKTKRLDEA-------LTLLELMVQRG------CSPSVITYNMVITCLCKLDKVDKA 620

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
            ELF +M  RGI+   V Y+ LI G C  GR  +A ++   + S  C  D      L  +
Sbjct: 621 WELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEIDDLKCRKLYLA 680

Query: 359 YSKIEKVEEALSLYGEMIS 377
                + EEA  L   M +
Sbjct: 681 LRGQGRGEEAAELLRRMTT 699


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 125/457 (27%), Positives = 203/457 (44%), Gaps = 55/457 (12%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +N +   PD  + N L+   C    + DA      +L +  SP VVT   L+   C +  
Sbjct: 242 INGMPFPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESG 301

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
           + +A  L  +  A  C P+++     Y  +I+ +C +G V++   +  ++   G  PDA 
Sbjct: 302 YRQAMALLDEMRAKGCEPDIV----TYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAV 357

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            Y  +++  C +  W++ +       EL  E  + N      C PD +++ +I+ SLC+ 
Sbjct: 358 TYTPVLKSLCGSERWKEVE-------ELLAEMTSNN------CAPDEVTFNTIVTSLCQQ 404

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
            LVD+A E+   M   G + D+V YSS++DG C +GR+DDA +L   ++S GC PDT +Y
Sbjct: 405 GLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAY 464

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHN 399
            T++      E+ E A  L  EM+     PD                +  A  +   +  
Sbjct: 465 TTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSE 524

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
                D+  +NC++DGLC    +  A EL   L   G +P++VT+  ++ GLC     E 
Sbjct: 525 NGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWED 584

Query: 460 AYDLLPDMEEK-------------IRECLK-----AIELLHKMAKRYVKPDEITVSILEE 501
           A  L+ +M                   C K     AIE L  MA+    P+  T SI+ +
Sbjct: 585 AEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVD 644

Query: 502 LLNKDENCHECMNLL-------PSFLSRNQEESKLTR 531
            L K       + LL       P  ++ N   S LT+
Sbjct: 645 ALLKAGKAQAALELLSGMTNGTPDLITYNTVISNLTK 681



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 116/439 (26%), Positives = 199/439 (45%), Gaps = 59/439 (13%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DAL  F+ M+H   +P + +++ LL A   +  Y   + L + +   G  PD V+ N+L+
Sbjct: 269 DALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLI 328

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           N  C    V +A   L  +      PD VT   +++ LC   ++ E   L  +  + +C 
Sbjct: 329 NAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCA 388

Query: 190 PN-------------------------------VIPNVICYASIIDGLCKDGFVNKVRVL 218
           P+                                + +++ Y+SI+DGLC  G V+    L
Sbjct: 389 PDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVEL 448

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD 278
              +K  G  PD   Y ++++  C    WE A+       EL  E +  +      C PD
Sbjct: 449 LSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAE-------ELMAEMLCSD------CPPD 495

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
            +++ +++ SLC+  LVD+A  +   M   G  PD+V Y+ +IDG C    IDDA +L  
Sbjct: 496 EVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLS 555

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCI------- 387
            ++S GC PD  ++NTL+     +++ E+A  L   M+     PD    N+ I       
Sbjct: 556 DLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKG 615

Query: 388 --LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
              +A E  + +       + + ++ +VD L K+ + ++A EL   +      P+++TY 
Sbjct: 616 LLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGM--TNGTPDLITYN 673

Query: 446 VMICGLCIEGGIEKAYDLL 464
            +I  L   G +E+A DLL
Sbjct: 674 TVISNLTKAGKMEEALDLL 692



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 131/494 (26%), Positives = 214/494 (43%), Gaps = 61/494 (12%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMP---SFNSLLGALAGKKYYVNFICLSERLNTIGL 118
           ++G +E  DA    N M      PF P   +FN L+ AL  +    + + + + +   G 
Sbjct: 231 RAGRIE--DARRLINGM------PFPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGC 282

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
            P  V+ +IL++  CK  G   A   L  +  K   PD+VT   LI  +C +G   EA  
Sbjct: 283 SPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALN 342

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           + +   +  C+    P+ + Y  ++  LC      +V  L  +M      PD   +N+++
Sbjct: 343 ILSNLPSHGCK----PDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIV 398

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
              C        +G    A+E+    V+   E G  C  D+++Y SI++ LC    VD A
Sbjct: 399 TSLC-------QQGLVDRAIEV----VDHMSEHG--CVADIVTYSSILDGLCDVGRVDDA 445

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
            EL   +KS G  PD + Y++++ G C   + + A +L   +    C PD  ++NT++ S
Sbjct: 446 VELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVAS 505

Query: 359 YSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELD 405
             +   V+ A+ +  +M   G  PD              SCI +A EL   L +   + D
Sbjct: 506 LCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPD 565

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
           +  FN L+ GLC   R   A +L   + R    P+ +T+  +I  LC +G + +A + L 
Sbjct: 566 IVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLK 625

Query: 466 DMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDE 507
            M E                  K  +   A+ELL  M      PD IT + +   L K  
Sbjct: 626 IMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNG--TPDLITYNTVISNLTKAG 683

Query: 508 NCHECMNLLPSFLS 521
              E ++LL   +S
Sbjct: 684 KMEEALDLLRVMVS 697



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 121/499 (24%), Positives = 217/499 (43%), Gaps = 46/499 (9%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N+   E ++++AL   + +      P   ++  +L +L G + +     L   + +    
Sbjct: 329 NAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCA 388

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V+ N ++   C+   V  A   +  +       D+VT   ++ GLC  G+  +A  L
Sbjct: 389 PDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVEL 448

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
            ++  ++ C+    P+ I Y +++ GLC      +   L  +M      PD   +N+++ 
Sbjct: 449 LSRLKSYGCK----PDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVA 504

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C        KG    A+ + E+  + NG     C PD+++Y  II+ LC +  +D A 
Sbjct: 505 SLC-------QKGLVDRAIRVVEQM-SENG-----CSPDIVTYNCIIDGLCNESCIDDAM 551

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           EL  D++S G  PD+V +++L+ G C + R +DA +L  ++    C PD  ++NT+I S 
Sbjct: 552 ELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSL 611

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNS-------CILEAAELFRTLH----NTKFELDLTV 408
            +   + +A+     M   G  P++S        +L+A +    L      T    DL  
Sbjct: 612 CQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNGTPDLIT 671

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +N ++  L K+ ++  A +L + +   G  P+  TY  +  G+C E G ++A  +L  ++
Sbjct: 672 YNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQ 731

Query: 469 E------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCH 510
           +                  + R    AI+    M      PDE T  IL E L       
Sbjct: 732 DTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLLD 791

Query: 511 ECMNLLPSFLSRNQEESKL 529
           E   LL S  S    + KL
Sbjct: 792 EAKRLLASLCSLGVLDKKL 810



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 108/265 (40%), Gaps = 48/265 (18%)

Query: 286 INSLCKDVLVDKAKELFLDMKSRGI--IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
           + SL +   +D+A  LF  M S G    P VV  + LI   C  GR+ DA ++F ++   
Sbjct: 157 LRSLVQRGEIDEALVLFDSMASGGGRNCPPVVPCNILIKRLCSDGRVSDAERVFAALGPS 216

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFE 403
             +    +YNT++N Y +  ++E+A                          R ++   F 
Sbjct: 217 ATV---VTYNTMVNGYCRAGRIEDA-------------------------RRLINGMPFP 248

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D   FN L+  LC   R+  A  +F  +   G  P+VVTY++++   C E G  +A  L
Sbjct: 249 PDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMAL 308

Query: 464 LPDMEEKIRE------------------CLKAIELLHKMAKRYVKPDEITVSILEELLNK 505
           L +M  K  E                    +A+ +L  +     KPD +T + + + L  
Sbjct: 309 LDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCG 368

Query: 506 DENCHECMNLLPSFLSRNQEESKLT 530
            E   E   LL    S N    ++T
Sbjct: 369 SERWKEVEELLAEMTSNNCAPDEVT 393


>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
 gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 465

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 124/468 (26%), Positives = 216/468 (46%), Gaps = 76/468 (16%)

Query: 40  HSNSVSTVEEKTKLLKYLSENSK-SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALA 98
           H N +     K  L+ Y S ++      +++DA+  FN ++   PTP    FN +LG+L 
Sbjct: 39  HFNFIPCSSSKINLIPYSSTSTTFHSNNDVDDAVSLFNCLLRQNPTPPAIEFNKILGSLV 98

Query: 99  GKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVV 158
             K+Y   + LS+++   G+ P+ V+ NIL+NCFC++  +  AF    +IL+  ++P+ +
Sbjct: 99  KSKHYHTVLYLSKKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYNPNTI 158

Query: 159 TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI------------------------- 193
           T   LI+GLC++G+  +A     K VA   + N I                         
Sbjct: 159 TFTTLIKGLCLKGQIHQALNFHDKLVALGFQFNQISYGTLIDGLCKVGETRAALDLLRRV 218

Query: 194 ------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
                 PNV+ Y++IIDG+CKD  VN    L+ +M  +GI P+   Y++LI  +      
Sbjct: 219 DGKLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKL 278

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           +D       A++L  + ++ N        PDV ++  +++  CK   +  A +L  +M  
Sbjct: 279 KD-------AVDLFNKMISEN------IKPDVYTFNILVDVFCKSGKISYALKLVDEMHD 325

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           RG  P++V YSS++D  C   R+D A  L   ++ +G  P+  +Y  LI+      K+E+
Sbjct: 326 RGQPPNIVTYSSILDALCKTHRVDKAVALLTKLKDQGIRPNMHTYTILIDGLCTSGKLED 385

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           A +++ +++  G                      +++ +  +  +  G CK      A  
Sbjct: 386 ARNIFEDLLVKG----------------------YDITVVTYIVMFYGFCKKGLFDEASA 423

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI-REC 474
           L  K+   G  P+  TY ++   L  +G          DM EK+ REC
Sbjct: 424 LLSKMEENGCIPDAKTYELIKLSLFKKGE--------NDMAEKLHREC 463



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 111/452 (24%), Positives = 193/452 (42%), Gaps = 71/452 (15%)

Query: 80  HMQPTPFMPSFNSLLGALAGKKYYVNFI-CLSERLNTIGLLPDFVSLNILMNCFCKMIGV 138
           H  P  F PSF  L      K  + NFI C S ++N   L+P     +     F     V
Sbjct: 23  HFVPKKF-PSFQFL------KNTHFNFIPCSSSKIN---LIP----YSSTSTTFHSNNDV 68

Query: 139 SDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVIC 198
            DA      +LR+  +P  +    ++  L     +     L  K      +PN++   I 
Sbjct: 69  DDAVSLFNCLLRQNPTPPAIEFNKILGSLVKSKHYHTVLYLSKKMEFRGIKPNLVNCNI- 127

Query: 199 YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL 258
              +I+  C+ G +     +F  +   G  P+   + +LI+  C        KG    AL
Sbjct: 128 ---LINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCL-------KGQIHQAL 177

Query: 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS 318
             H++ V    +   I      SY ++I+ LCK      A +L   +  + + P+VV+YS
Sbjct: 178 NFHDKLVALGFQFNQI------SYGTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYS 231

Query: 319 SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
           ++IDG C    ++DA  L+  + S+G  P+  +Y+ LI+ +  + K+++A+ L+ +MIS 
Sbjct: 232 TIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISE 291

Query: 379 GVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
            ++PD                      +  FN LVD  CKS ++  A +L  ++   G  
Sbjct: 292 NIKPD----------------------VYTFNILVDVFCKSGKISYALKLVDEMHDRGQP 329

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSI 498
           PN+VTY+ ++  LC                 K     KA+ LL K+  + ++P+  T +I
Sbjct: 330 PNIVTYSSILDALC-----------------KTHRVDKAVALLTKLKDQGIRPNMHTYTI 372

Query: 499 LEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           L + L       +  N+    L +  + + +T
Sbjct: 373 LIDGLCTSGKLEDARNIFEDLLVKGYDITVVT 404


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 201/404 (49%), Gaps = 56/404 (13%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G LP+ V+ N +++ +CK+  + +AF  L  +  K  +P++++   +I GLC +G+  E 
Sbjct: 233 GCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKET 292

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
           S +  +      +   +P+ + + ++I+G C  G  ++  VL  +M   G+ P+   Y +
Sbjct: 293 SEILEEM----SKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTT 348

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI   C A       GN + A+E    F++   + G+  HP+  +Y ++I+   +   + 
Sbjct: 349 LINSMCKA-------GNLNRAME----FLDQMRDRGL--HPNGRTYTTLIDGFSQQGFLK 395

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A ++  +M   G  P ++ Y++LI+G+C++GR++DA  L   +   G IPD  SY+T+I
Sbjct: 396 QAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTII 455

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           + + + +++E+A  L  EM++ G+ PD                      +  ++ L+ GL
Sbjct: 456 SGFCRNQELEKAFQLKVEMVAKGISPD----------------------VATYSSLIQGL 493

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLK 476
           CK  RL    +LF+++   G  P+ VTYT +I   CIEG ++                 K
Sbjct: 494 CKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLD-----------------K 536

Query: 477 AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
           A+ L  +M ++   PD +T ++L    NK     E   LL   L
Sbjct: 537 ALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLL 580



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 126/454 (27%), Positives = 198/454 (43%), Gaps = 83/454 (18%)

Query: 63  SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF 122
           +G +E+   L FF  M      P + ++N+++ A    +       L   +   GL P+ 
Sbjct: 216 AGNLEM--GLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNL 273

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           +S N+++N  C+   + +    L  + ++ + PD VT   LI G C  G F +A  L  +
Sbjct: 274 ISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAE 333

Query: 183 FVAFDCRPNVI-------------------------------PNVICYASIIDGLCKDGF 211
            V     PNV+                               PN   Y ++IDG  + GF
Sbjct: 334 MVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGF 393

Query: 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGEL 271
           + +   +  +M   G  P    YN+LI  +C     EDA G       L +E +    E 
Sbjct: 394 LKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASG-------LLQEMI----ER 442

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
           G I  PDV+SY +II+  C++  ++KA +L ++M ++GI PDV  YSSLI G C   R+ 
Sbjct: 443 GFI--PDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLG 500

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAA 391
           +   LF  + S G  PD  +Y +LIN+Y     +++AL L+ EMI  G  P         
Sbjct: 501 EVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSP--------- 551

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI--C 449
                        D+  +N L++G  K  R + A  L  KL      PN +TY  +I  C
Sbjct: 552 -------------DIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNC 598

Query: 450 -------------GLCIEGGIEKAYDLLPDMEEK 470
                        G C++G + +A  +L  M +K
Sbjct: 599 NNLEFKSALALMKGFCMKGLMNEADRVLESMLQK 632



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 193/388 (49%), Gaps = 24/388 (6%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
            + AL     M+    +P + ++ +L+ ++         +   +++   GL P+  +   
Sbjct: 324 FHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTT 383

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++ F +   +  A+  +  ++   F+P ++T   LI G C+ G+  +ASGL  + +   
Sbjct: 384 LIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMI--- 440

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
                IP+V+ Y++II G C++  + K   L ++M  +GI PD   Y+SLI+  C     
Sbjct: 441 -ERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLC----- 494

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
              +       +L +E ++    LG+   PD ++Y S+IN+ C +  +DKA  L  +M  
Sbjct: 495 --KQRRLGEVCDLFQEMLS----LGL--PPDEVTYTSLINAYCIEGDLDKALRLHDEMIQ 546

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           +G  PD+V Y+ LI+G+    R  +A++L + +  E  +P+  +YNTLI++ + +E  + 
Sbjct: 547 KGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLE-FKS 605

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           AL+L       G+      + EA  +  ++    ++L+  V+N ++ G  K   +  A+ 
Sbjct: 606 ALALMKGFCMKGL------MNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYN 659

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEG 455
           L+K++   G  P+ VT   +   L  EG
Sbjct: 660 LYKEMLHSGFAPHSVTIMALAKSLYHEG 687



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 178/373 (47%), Gaps = 38/373 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           LN A+ F + M      P   ++ +L+   + + +      + + +   G  P  ++ N 
Sbjct: 359 LNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNA 418

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N  C +  + DA   L  ++ + F PDVV+   +I G C   +  +A  L  + VA  
Sbjct: 419 LINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVA-- 476

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               + P+V  Y+S+I GLCK   + +V  LF +M   G+ PD   Y SLI  YC     
Sbjct: 477 --KGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCI---- 530

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
              +G+   AL LH+E +           PD+++Y  +IN   K     +AK L L +  
Sbjct: 531 ---EGDLDKALRLHDEMIQKG------FSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLY 581

Query: 308 RGIIPDVVVYSSLID---------------GYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
              +P+ + Y++LID               G+C+ G +++A ++  S+  +G   +   Y
Sbjct: 582 EESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVY 641

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCL 412
           N +I+ +SK+  +E+A +LY EM+  G  P +  I+  A   ++L++   E++L   N L
Sbjct: 642 NVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALA---KSLYHEGKEVEL---NQL 695

Query: 413 VDGLCKSWRLRSA 425
           +D   KS R+  A
Sbjct: 696 LDYTLKSCRITEA 708



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 169/361 (46%), Gaps = 45/361 (12%)

Query: 193 IPNVICYASIIDGLCKDGFVNKV-RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
           +P V+ Y +I+D + +     K+   +F +M   G+ P+ + YN LIR +C A       
Sbjct: 164 MPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTA------- 216

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
           GN    L    E +  NG     C P+V++Y +II++ CK   + +A +L   M  +G+ 
Sbjct: 217 GNLEMGLXFFGE-MERNG-----CLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLN 270

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           P+++ Y+ +I+G C  G++ +  ++   +     +PD  ++NTLIN Y  +    +AL L
Sbjct: 271 PNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVL 330

Query: 372 YGEMISMGVRPD--------NSC-----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
           + EM+  G+ P+        NS      +  A E    + +     +   +  L+DG  +
Sbjct: 331 HAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQ 390

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE--------- 469
              L+ A+++ K++   G  P ++TY  +I G CI G +E A  LL +M E         
Sbjct: 391 QGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVS 450

Query: 470 ---------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
                    + +E  KA +L  +M  + + PD  T S L + L K     E  +L    L
Sbjct: 451 YSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEML 510

Query: 521 S 521
           S
Sbjct: 511 S 511



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 86/199 (43%), Gaps = 19/199 (9%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           EL  A      M+    +P + +++SL+  L  ++       L + + ++GL PD V+  
Sbjct: 463 ELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYT 522

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+N +C    +  A      +++K FSPD+VT   LI G   Q +  EA  L  K +  
Sbjct: 523 SLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYE 582

Query: 187 DCRPNVIPNVICYASIID---------------GLCKDGFVNKVRVLFLDMKGRGIYPDA 231
           +     +PN I Y ++ID               G C  G +N+   +   M  +G   + 
Sbjct: 583 ES----VPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNE 638

Query: 232 FVYNSLIRVYCCAVNWEDA 250
            VYN +I  +    N E A
Sbjct: 639 EVYNVIIHGHSKVGNIEKA 657


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 201/404 (49%), Gaps = 56/404 (13%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G LP+ V+ N +++ +CK+  + +AF  L  +  K  +P++++   +I GLC +G+  E 
Sbjct: 233 GCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKET 292

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
           S +  +      +   +P+ + + ++I+G C  G  ++  VL  +M   G+ P+   Y +
Sbjct: 293 SEILEEM----SKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTT 348

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI   C A       GN + A+E    F++   + G+  HP+  +Y ++I+   +   + 
Sbjct: 349 LINSMCKA-------GNLNRAME----FLDQMRDRGL--HPNGRTYTTLIDGFSQQGFLK 395

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A ++  +M   G  P ++ Y++LI+G+C++GR++DA  L   +   G IPD  SY+T+I
Sbjct: 396 QAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTII 455

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           + + + +++E+A  L  EM++ G+ PD                      +  ++ L+ GL
Sbjct: 456 SGFCRNQELEKAFQLKVEMVAKGISPD----------------------VATYSSLIQGL 493

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLK 476
           CK  RL    +LF+++   G  P+ VTYT +I   CIEG ++                 K
Sbjct: 494 CKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLD-----------------K 536

Query: 477 AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
           A+ L  +M ++   PD +T ++L    NK     E   LL   L
Sbjct: 537 ALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLL 580



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 126/454 (27%), Positives = 198/454 (43%), Gaps = 83/454 (18%)

Query: 63  SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF 122
           +G +E+   L FF  M      P + ++N+++ A    +       L   +   GL P+ 
Sbjct: 216 AGNLEM--GLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNL 273

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           +S N+++N  C+   + +    L  + ++ + PD VT   LI G C  G F +A  L  +
Sbjct: 274 ISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAE 333

Query: 183 FVAFDCRPNVI-------------------------------PNVICYASIIDGLCKDGF 211
            V     PNV+                               PN   Y ++IDG  + GF
Sbjct: 334 MVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGF 393

Query: 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGEL 271
           + +   +  +M   G  P    YN+LI  +C     EDA G       L +E +    E 
Sbjct: 394 LKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASG-------LLQEMI----ER 442

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
           G I  PDV+SY +II+  C++  ++KA +L ++M ++GI PDV  YSSLI G C   R+ 
Sbjct: 443 GFI--PDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLG 500

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAA 391
           +   LF  + S G  PD  +Y +LIN+Y     +++AL L+ EMI  G  P         
Sbjct: 501 EVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSP--------- 551

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI--C 449
                        D+  +N L++G  K  R + A  L  KL      PN +TY  +I  C
Sbjct: 552 -------------DIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNC 598

Query: 450 -------------GLCIEGGIEKAYDLLPDMEEK 470
                        G C++G + +A  +L  M +K
Sbjct: 599 NNLEFKSALALMKGFCMKGLMNEADRVLESMLQK 632



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 193/388 (49%), Gaps = 24/388 (6%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
            + AL     M+    +P + ++ +L+ ++         +   +++   GL P+  +   
Sbjct: 324 FHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTT 383

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++ F +   +  A+  +  ++   F+P ++T   LI G C+ G+  +ASGL  + +   
Sbjct: 384 LIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMI--- 440

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
                IP+V+ Y++II G C++  + K   L ++M  +GI PD   Y+SLI+  C     
Sbjct: 441 -ERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLC----- 494

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
              +       +L +E ++    LG+   PD ++Y S+IN+ C +  +DKA  L  +M  
Sbjct: 495 --KQRRLGEVCDLFQEMLS----LGL--PPDEVTYTSLINAYCIEGDLDKALRLHDEMIQ 546

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           +G  PD+V Y+ LI+G+    R  +A++L + +  E  +P+  +YNTLI++ + +E  + 
Sbjct: 547 KGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLE-FKS 605

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           AL+L       G+      + EA  +  ++    ++L+  V+N ++ G  K   +  A+ 
Sbjct: 606 ALALMKGFCMKGL------MNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYN 659

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEG 455
           L+K++   G  P+ VT   +   L  EG
Sbjct: 660 LYKEMLHSGFAPHSVTIMALAKSLYHEG 687



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 178/373 (47%), Gaps = 38/373 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           LN A+ F + M      P   ++ +L+   + + +      + + +   G  P  ++ N 
Sbjct: 359 LNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNA 418

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N  C +  + DA   L  ++ + F PDVV+   +I G C   +  +A  L  + VA  
Sbjct: 419 LINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVA-- 476

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               + P+V  Y+S+I GLCK   + +V  LF +M   G+ PD   Y SLI  YC     
Sbjct: 477 --KGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCI---- 530

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
              +G+   AL LH+E +           PD+++Y  +IN   K     +AK L L +  
Sbjct: 531 ---EGDLDKALRLHDEMIQKG------FSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLY 581

Query: 308 RGIIPDVVVYSSLID---------------GYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
              +P+ + Y++LID               G+C+ G +++A ++  S+  +G   +   Y
Sbjct: 582 EESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVY 641

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCL 412
           N +I+ +SK+  +E+A +LY EM+  G  P +  I+  A   ++L++   E++L   N L
Sbjct: 642 NVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALA---KSLYHEGKEVEL---NQL 695

Query: 413 VDGLCKSWRLRSA 425
           +D   KS R+  A
Sbjct: 696 LDYTLKSCRITEA 708



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 169/361 (46%), Gaps = 45/361 (12%)

Query: 193 IPNVICYASIIDGLCKDGFVNKV-RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
           +P V+ Y +I+D + +     K+   +F +M   G+ P+ + YN LIR +C A       
Sbjct: 164 MPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTA------- 216

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
           GN    L    E +  NG     C P+V++Y +II++ CK   + +A +L   M  +G+ 
Sbjct: 217 GNLEMGLFFFGE-MERNG-----CLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLN 270

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           P+++ Y+ +I+G C  G++ +  ++   +     +PD  ++NTLIN Y  +    +AL L
Sbjct: 271 PNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVL 330

Query: 372 YGEMISMGVRPD--------NSC-----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
           + EM+  G+ P+        NS      +  A E    + +     +   +  L+DG  +
Sbjct: 331 HAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQ 390

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE--------- 469
              L+ A+++ K++   G  P ++TY  +I G CI G +E A  LL +M E         
Sbjct: 391 QGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVS 450

Query: 470 ---------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
                    + +E  KA +L  +M  + + PD  T S L + L K     E  +L    L
Sbjct: 451 YSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEML 510

Query: 521 S 521
           S
Sbjct: 511 S 511



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 86/199 (43%), Gaps = 19/199 (9%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           EL  A      M+    +P + +++SL+  L  ++       L + + ++GL PD V+  
Sbjct: 463 ELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYT 522

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+N +C    +  A      +++K FSPD+VT   LI G   Q +  EA  L  K +  
Sbjct: 523 SLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYE 582

Query: 187 DCRPNVIPNVICYASIID---------------GLCKDGFVNKVRVLFLDMKGRGIYPDA 231
           +     +PN I Y ++ID               G C  G +N+   +   M  +G   + 
Sbjct: 583 ES----VPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNE 638

Query: 232 FVYNSLIRVYCCAVNWEDA 250
            VYN +I  +    N E A
Sbjct: 639 EVYNVIIHGHSKVGNIEKA 657


>gi|358347568|ref|XP_003637828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503763|gb|AES84966.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 529

 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 126/448 (28%), Positives = 205/448 (45%), Gaps = 71/448 (15%)

Query: 80  HMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVS 139
           H  PTP +  F  +LG+L    +Y   + L  ++   GL  + V+L+IL+NC+ ++   +
Sbjct: 5   HKNPTPSIFEFGKILGSLVKANHYSIVVSLHRQMEFNGLASNLVTLSILINCYSQLGQNA 64

Query: 140 DAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN-------- 191
            +F     IL+K +  D +T   LI+GLC++G+  +A     K VA   + N        
Sbjct: 65  LSFSVFANILKKGYGSDAITFTTLIKGLCLKGEIHKALHFHDKVVAQGFKLNQVSYGTLI 124

Query: 192 -----------------------VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
                                  V P+V+ Y +IIDGLCKD  VN    L+ +M  + I 
Sbjct: 125 NGLCKVGQTRAALEFLRRIDGKLVQPDVVMYNTIIDGLCKDKLVNDAFNLYFEMVAKRIC 184

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           P    YN+LI   C     +DA G       LH+  +          +P V ++  +I++
Sbjct: 185 PSVVTYNTLICGLCIMAQLKDAIG------LLHKMILED-------INPTVYTFSILIDA 231

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG--------------RIDDAR 334
            CK+  + +AK +F  M    + P++V Y+SL+DG+ L+                +D+A 
Sbjct: 232 FCKEGKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGHHLVNVVKKAKSIFNTMIKMVDEAM 291

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----------- 383
            LF  +  +   PD   YN+LI+   K  +   AL   GEM   G  PD           
Sbjct: 292 NLFEEMHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQPPDIFTYNSLLDAL 351

Query: 384 --NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
             N  + +A EL   L +   +  +  +N L++GLCKS RL+ A ++F+ L   G   +V
Sbjct: 352 CKNYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAEKVFEDLLVKGYNTDV 411

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDMEE 469
            TY  MI G C +G  ++   ++  M++
Sbjct: 412 YTYNAMIKGFCKKGLFDETLAMVSKMKD 439



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 158/336 (47%), Gaps = 34/336 (10%)

Query: 81  MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSD 140
           +QP   M  +N+++  L   K   +   L   +    + P  V+ N L+   C M  + D
Sbjct: 148 VQPDVVM--YNTIIDGLCKDKLVNDAFNLYFEMVAKRICPSVVTYNTLICGLCIMAQLKD 205

Query: 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200
           A   L +++ +  +P V T   LI   C +GK  EA  +F    A   + +V PN++ Y 
Sbjct: 206 AIGLLHKMILEDINPTVYTFSILIDAFCKEGKMKEAKNVF----AVMMKEDVKPNIVTYN 261

Query: 201 SIIDGLCKDGFVNKVRV--------------LFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           S++DG      V K +               LF +M  + IYPD  +YNSLI   C    
Sbjct: 262 SLMDGHHLVNVVKKAKSIFNTMIKMVDEAMNLFEEMHFKQIYPDMVIYNSLIDGLC---- 317

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G T  AL+   E ++  G+      PD+ +Y S++++LCK+  VDKA EL   +K
Sbjct: 318 ---KSGRTPYALKFIGE-MHYRGQ-----PPDIFTYNSLLDALCKNYHVDKAIELLTKLK 368

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            +GI P V  Y+ LI+G C  GR+ DA K+F  +  +G   D  +YN +I  + K    +
Sbjct: 369 DQGIQPSVCTYNILINGLCKSGRLKDAEKVFEDLLVKGYNTDVYTYNAMIKGFCKKGLFD 428

Query: 367 EALSLYGEMISMGVRPD-NSCILEAAELFRTLHNTK 401
           E L++  +M   G  PD  +C +    LF    N K
Sbjct: 429 ETLAMVSKMKDSGCSPDAKNCEIIIRSLFDKGENDK 464



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 136/307 (44%), Gaps = 38/307 (12%)

Query: 218 LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277
           +F ++  +G   DA  + +LI+  C        KG    AL  H++ V    +L  +   
Sbjct: 69  VFANILKKGYGSDAITFTTLIKGLCL-------KGEIHKALHFHDKVVAQGFKLNQV--- 118

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
              SY ++IN LCK      A E    +  + + PDVV+Y+++IDG C    ++DA  L+
Sbjct: 119 ---SYGTLINGLCKVGQTRAALEFLRRIDGKLVQPDVVMYNTIIDGLCKDKLVNDAFNLY 175

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397
             + ++   P   +YNTLI     + ++++A+ L  +MI   + P               
Sbjct: 176 FEMVAKRICPSVVTYNTLICGLCIMAQLKDAIGLLHKMILEDINPT-------------- 221

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                   +  F+ L+D  CK  +++ A  +F  + +   +PN+VTY  ++ G  +   +
Sbjct: 222 --------VYTFSILIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGHHLVNVV 273

Query: 458 EKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLP 517
           +KA  +   M + + E   A+ L  +M  + + PD +  + L + L K       +  + 
Sbjct: 274 KKAKSIFNTMIKMVDE---AMNLFEEMHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIG 330

Query: 518 SFLSRNQ 524
               R Q
Sbjct: 331 EMHYRGQ 337



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 98/230 (42%), Gaps = 39/230 (16%)

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           +F ++  +G   D + +++LI G CL G I  A      + ++G   +  SY TLIN   
Sbjct: 69  VFANILKKGYGSDAITFTTLIKGLCLKGEIHKALHFHDKVVAQGFKLNQVSYGTLINGLC 128

Query: 361 KIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           K+ +   AL                      E  R +     + D+ ++N ++DGLCK  
Sbjct: 129 KVGQTRAAL----------------------EFLRRIDGKLVQPDVVMYNTIIDGLCKDK 166

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIEL 480
            +  A+ L+ ++      P+VVTY  +ICGLCI   ++ A                 I L
Sbjct: 167 LVNDAFNLYFEMVAKRICPSVVTYNTLICGLCIMAQLKDA-----------------IGL 209

Query: 481 LHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           LHKM    + P   T SIL +   K+    E  N+    +  + + + +T
Sbjct: 210 LHKMILEDINPTVYTFSILIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVT 259



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 120/291 (41%), Gaps = 36/291 (12%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +NDA   +  M+  +  P + ++N+L+  L       + I L  ++    + P   + +I
Sbjct: 168 VNDAFNLYFEMVAKRICPSVVTYNTLICGLCIMAQLKDAIGLLHKMILEDINPTVYTFSI 227

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF- 186
           L++ FCK   + +A      ++++   P++VT   L+ G  +     +A  +F   +   
Sbjct: 228 LIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGHHLVNVVKKAKSIFNTMIKMV 287

Query: 187 DCRPN---------VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
           D   N         + P+++ Y S+IDGLCK G          +M  RG  PD F YNSL
Sbjct: 288 DEAMNLFEEMHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQPPDIFTYNSL 347

Query: 238 IRVYCCAVNWEDA--------KGNTSAALELHEEFVNGNGELGVI--------------C 275
           +   C   + + A              ++  +   +NG  + G +               
Sbjct: 348 LDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAEKVFEDLLVKGY 407

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV----VVYSSLID 322
           + DV +Y ++I   CK  L D+   +   MK  G  PD     ++  SL D
Sbjct: 408 NTDVYTYNAMIKGFCKKGLFDETLAMVSKMKDSGCSPDAKNCEIIIRSLFD 458


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 137/548 (25%), Positives = 240/548 (43%), Gaps = 110/548 (20%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A  F   M++    P   ++N+L+   +    +   + + + +    +LPD V+L++
Sbjct: 270 MDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSM 329

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           LM   CK   + +A      +  K  +P+V +   ++ G   +G   + + LF   +   
Sbjct: 330 LMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDG 389

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
             P++                                P+V+ Y ++I  LC+ G ++   
Sbjct: 390 IAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAM 449

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
             F  M  +G+ PD + Y+ LI+ +C         G+   A EL  E +N NG      H
Sbjct: 450 EKFNQMIDQGVAPDKYAYHCLIQGFC-------THGSLLKAKELISEIMN-NG-----MH 496

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
            D++ + SIIN+LCK   V  A+ +F    + G+ P  VVYS L+DGYCL+G+++ A ++
Sbjct: 497 LDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRV 556

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------- 383
           F ++ S G  P+   Y TL+N Y KI +++E LSL+ EM+  G++P              
Sbjct: 557 FDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFE 616

Query: 384 -----------------------------------NSCILEAAELFRTLHNTKFELDLTV 408
                                              N C  EA  LF+ L     ++++  
Sbjct: 617 AGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIIT 676

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
            N ++ G+ ++ R+  A +LF  + R G  P VVTY++MI  L  EG +E+A D+   M+
Sbjct: 677 LNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQ 736

Query: 469 EK------------IRECLKAIEL------LHKMAKRYVKPDEITVSILEELLNKDENCH 510
                         +RE LK  E+      L K+ +R    + +T  +L +L +    C 
Sbjct: 737 NAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVDLFSSKGTCR 796

Query: 511 ECMNLLPS 518
           E +  LP+
Sbjct: 797 EHIRFLPA 804



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 123/473 (26%), Positives = 198/473 (41%), Gaps = 93/473 (19%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAF-VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
           GL  + +  N L+  FC+     +A  + L R       PDV +   L++ LC QGK  +
Sbjct: 141 GLRVNIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQ 200

Query: 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
           A  L       +      P+V+ Y+++IDG  K+G VNK   LF +M  RGI PD   Y+
Sbjct: 201 ADDLLRMMA--EGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYS 258

Query: 236 SLIRVYCCAV--------------------NWE--------DAKGNTSAALELHEEF--- 264
           S++   C A                     NW          + G    A+ + +E    
Sbjct: 259 SVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRH 318

Query: 265 ------VNGNGELGVIC--------------------HPDVLSYCSIINSLC-KDVLVDK 297
                 V  +  +G +C                    +P+V SY  ++N    K  LVD 
Sbjct: 319 SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDM 378

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
             +LF  M   GI PD+  ++ LI  Y   G +D A  +F  +   G  PD  +Y T+I 
Sbjct: 379 T-DLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIA 437

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFEL 404
           +  +I K+++A+  + +MI  GV PD             +  +L+A EL   + N    L
Sbjct: 438 ALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHL 497

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA---- 460
           D+  F+ +++ LCK  R+  A  +F      G  P  V Y++++ G C+ G +EKA    
Sbjct: 498 DIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVF 557

Query: 461 --------------YDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                         Y  L +   KI    + + L  +M ++ +KP  I  +I+
Sbjct: 558 DAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNII 610



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/270 (21%), Positives = 110/270 (40%), Gaps = 39/270 (14%)

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
           +  P   +Y  +++   +    + A   F  +   G+  ++++ + L+ G+C   R D+A
Sbjct: 106 VLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEA 165

Query: 334 RKLFVSIESE-GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392
             + +    E GC+PD  SY+ L+ S     K  +A  L   M   G      C      
Sbjct: 166 LDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGA----VC------ 215

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
                       D+  ++ ++DG  K   +  A +LFK++ + G  P+ VTY+ ++  LC
Sbjct: 216 ----------SPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALC 265

Query: 453 IEGGIEKAYDLLPDMEEK------------------IRECLKAIELLHKMAKRYVKPDEI 494
               ++KA   L  M  K                    +  +A+ +  +M +  + PD +
Sbjct: 266 KARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVV 325

Query: 495 TVSILEELLNKDENCHECMNLLPSFLSRNQ 524
           T+S+L   L K     E  ++  +   + Q
Sbjct: 326 TLSMLMGSLCKYGKIKEARDVFDTMAMKGQ 355


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 121/440 (27%), Positives = 208/440 (47%), Gaps = 57/440 (12%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFI-CLSERLNTIGLLPDFVSLNILMNCFCKMI 136
           M+     P + ++N L+ AL  +      +  + + +   G  P+ V+ N L+  FC+  
Sbjct: 145 MLRDGVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAG 204

Query: 137 GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNV 196
            V  A   +G +      P +VT   ++ GLC  G+  +A  +F +      R  + P+ 
Sbjct: 205 EVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMA----REGLTPDG 260

Query: 197 ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSA 256
           + Y +++ G CK G +++   +F +M  +G+ PD   + SLI   C A N E A    + 
Sbjct: 261 VSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERA---VAL 317

Query: 257 ALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV 316
             ++ E  +  N            ++ ++I+  C++  +D A     +M+   I P VV 
Sbjct: 318 VGQMRERGLRMN----------EFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVC 367

Query: 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
           Y+ LI+GYC +GR+D+AR+L   +E++G  PD  +Y+T+++ Y KI   + A  L  +M+
Sbjct: 368 YNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKML 427

Query: 377 SMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
             GV PD                         ++ L+ GLC+  RL  A ELF+K+ + G
Sbjct: 428 KKGVVPDA----------------------ITYSSLIRGLCEERRLGDACELFEKMLQLG 465

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITV 496
            +P+  TYT +I G C EG ++                 KA+ L  +M K+ V PD +T 
Sbjct: 466 LQPDEFTYTTLIDGHCKEGNVQ-----------------KALSLHDEMIKKGVLPDVVTY 508

Query: 497 SILEELLNKDENCHECMNLL 516
           S+L + L+K     E   LL
Sbjct: 509 SVLIDGLSKSARTKEAQRLL 528



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/388 (30%), Positives = 176/388 (45%), Gaps = 43/388 (11%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           ++GEV+  + L     M      P + +FN+++  L       +   + + +   GL PD
Sbjct: 202 RAGEVDAAERL--VGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPD 259

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            VS N L++ +CK   + +A      + +K   PDVVT   LI  +C  G    A  L  
Sbjct: 260 GVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVG 319

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           +      R N       + ++IDG C++GF++   +   +M+   I P    YN LI  Y
Sbjct: 320 QMRERGLRMNEFT----FTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGY 375

Query: 242 CCAVNWEDAKGNTSAALEL-HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
           C         G    A EL HE    G         PDV++Y +I++  CK    D A E
Sbjct: 376 C-------KLGRMDEARELIHEMEAKG-------MKPDVVTYSTILSGYCKIGDTDSAFE 421

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           L   M  +G++PD + YSSLI G C   R+ DA +LF  +   G  PD  +Y TLI+ + 
Sbjct: 422 LNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHC 481

Query: 361 KIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           K   V++ALSL+ EMI  GV P                      D+  ++ L+DGL KS 
Sbjct: 482 KEGNVQKALSLHDEMIKKGVLP----------------------DVVTYSVLIDGLSKSA 519

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMI 448
           R + A  L  KL    P P+ + Y  ++
Sbjct: 520 RTKEAQRLLFKLYYEDPVPDNIKYEALM 547



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 170/368 (46%), Gaps = 44/368 (11%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P+++ Y +++  L  D  +   R L   M   G+ P+ + YN L+R  C     E+A G 
Sbjct: 118 PSLLAYNAVLLAL-SDASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEALG- 175

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
                      V G+   G  C P+V++Y +++ + C+   VD A+ L   M+  G+ P 
Sbjct: 176 -----------VVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPS 224

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           +V ++++++G C  GR++DARK+F  +  EG  PD  SYNTL++ Y K   + EAL+++ 
Sbjct: 225 LVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFA 284

Query: 374 EMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           EM   GV PD                +  A  L   +      ++   F  L+DG C++ 
Sbjct: 285 EMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNG 344

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE----------- 469
            L  A    K++     +P+VV Y V+I G C  G +++A +L+ +ME            
Sbjct: 345 FLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYS 404

Query: 470 -------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
                  KI +   A EL  KM K+ V PD IT S L   L ++    +   L    L  
Sbjct: 405 TILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQL 464

Query: 523 NQEESKLT 530
             +  + T
Sbjct: 465 GLQPDEFT 472



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 110/405 (27%), Positives = 191/405 (47%), Gaps = 34/405 (8%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L++AL  F  M      P + +F SL+ A+         + L  ++   GL  +  +   
Sbjct: 276 LHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTA 335

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++ FC+   + DA +A+  +      P VV    LI G C  G+  EA  L  +  A  
Sbjct: 336 LIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEA-- 393

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               + P+V+ Y++I+ G CK G  +    L   M  +G+ PDA  Y+SLIR  C     
Sbjct: 394 --KGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRL 451

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
            DA        EL E+ +    +LG+   PD  +Y ++I+  CK+  V KA  L  +M  
Sbjct: 452 GDA-------CELFEKML----QLGL--QPDEFTYTTLIDGHCKEGNVQKALSLHDEMIK 498

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN-----SYSKI 362
           +G++PDVV YS LIDG     R  +A++L   +  E  +PD   Y  L++      +  +
Sbjct: 499 KGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAEFKSV 558

Query: 363 EKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRL 422
             + +  S+ G M             +A ++++++ +  ++LD +V++ L+ G C+   +
Sbjct: 559 VALLKGFSMKGLMN------------QADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGNI 606

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
             A    K+L R G  PN  +   ++ GL  EG   +A +++ ++
Sbjct: 607 MKALSFHKQLLRCGFSPNSTSTISLVRGLFEEGMTVEADNVIQEL 651



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 148/335 (44%), Gaps = 19/335 (5%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+DAL     M   +  P +  +N L+              L   +   G+ PD V+ + 
Sbjct: 346 LDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYST 405

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           +++ +CK+     AF    ++L+K   PD +T   LIRGLC + +  +A  LF K +   
Sbjct: 406 ILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLG 465

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            +P+       Y ++IDG CK+G V K   L  +M  +G+ PD   Y+ LI     +   
Sbjct: 466 LQPDEFT----YTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSART 521

Query: 248 EDAKGNTSAALELH-EEFVNGNGELGVICH----PDVLSYCSIINSLCKDVLVDKAKELF 302
           ++A+       +L+ E+ V  N +   + H     +  S  +++       L+++A +++
Sbjct: 522 KEAQ---RLLFKLYYEDPVPDNIKYEALMHCCRTAEFKSVVALLKGFSMKGLMNQADKVY 578

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
             M  R    D  VYS LI G+C  G I  A      +   G  P+++S  +L+    + 
Sbjct: 579 QSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSFHKQLLRCGFSPNSTSTISLVRGLFEE 638

Query: 363 EKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397
               EA ++  E++       N C L  AE  + L
Sbjct: 639 GMTVEADNVIQELL-------NCCSLADAETSKAL 666


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 124/445 (27%), Positives = 204/445 (45%), Gaps = 75/445 (16%)

Query: 117 GLLPDFVSLNILMNCFCK-MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
           G +P  +S N +++   +    +S A      +L    SP+V T   LIRG C  G    
Sbjct: 164 GFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDV 223

Query: 176 ASGLFTKFVAFDCRPNVI-------------------------------PNVICYASIID 204
           A  LF K     C PNV+                               PN+I Y  +I+
Sbjct: 224 ALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVIN 283

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           GLC++G + +V  +  +M  RG   D   YN+LI+ YC        +GN   AL +H E 
Sbjct: 284 GLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYC-------KEGNFHQALVMHAEM 336

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           +           P V++Y S+I+S+CK   +++A E    M+ RG+ P+   Y++L+DG+
Sbjct: 337 LRHG------LTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGF 390

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD- 383
              G +++A ++   +   G  P   +YN LIN +    K+E+A+++  +M   G+ PD 
Sbjct: 391 SQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDV 450

Query: 384 --NSCIL----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
              S +L          EA  + R +     + D   ++ L+ G C+  R + A +L+++
Sbjct: 451 VSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEE 510

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKP 491
           + R G  P+  TYT +I   C+EG +E                 KA++L ++M ++ V P
Sbjct: 511 MLRVGLPPDEFTYTALINAYCMEGDLE-----------------KALQLHNEMVEKGVLP 553

Query: 492 DEITVSILEELLNKDENCHECMNLL 516
           D +T S+L   LNK     E   LL
Sbjct: 554 DVVTYSVLINGLNKQSRTREAKRLL 578



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 120/413 (29%), Positives = 185/413 (44%), Gaps = 49/413 (11%)

Query: 85  PFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142
           P + S+N ++  L   G+   V+F+ L+E +N  G   D V+ N L+  +CK      A 
Sbjct: 273 PNLISYNVVINGLCREGRMKEVSFV-LTE-MNRRGYSLDEVTYNTLIKGYCKEGNFHQAL 330

Query: 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202
           V    +LR   +P V+T   LI  +C  G    A     +         + PN   Y ++
Sbjct: 331 VMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRV----RGLCPNERTYTTL 386

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
           +DG  + G++N+   +  +M   G  P    YN+LI  +C     EDA     A LE  +
Sbjct: 387 VDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDA----IAVLEDMK 442

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
           E     G       PDV+SY ++++  C+   VD+A  +  +M  +GI PD + YSSLI 
Sbjct: 443 E----KG-----LSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQ 493

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
           G+C   R  +A  L+  +   G  PD  +Y  LIN+Y     +E+AL L+ EM+  GV P
Sbjct: 494 GFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLP 553

Query: 383 D-------------NSCILEAAE-LFRTLHNTKFELDLT----VFNC----------LVD 414
           D              S   EA   L +  +      D+T    + NC          L+ 
Sbjct: 554 DVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIK 613

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           G C    +  A ++F+ +     +P+   Y +MI G C  G I KAY L  +M
Sbjct: 614 GFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEM 666



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 150/327 (45%), Gaps = 32/327 (9%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +N A+ F + M      P   ++ +L+   + K Y      +   +N  G  P  V+ N 
Sbjct: 361 MNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNA 420

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N  C    + DA   L  +  K  SPDVV+   ++ G C      EA  +  + V   
Sbjct: 421 LINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMV--- 477

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               + P+ I Y+S+I G C+     +   L+ +M   G+ PD F Y +LI  YC     
Sbjct: 478 -EKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYC----- 531

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
              +G+   AL+LH E V    E GV+  PDV++Y  +IN L K     +AK L L +  
Sbjct: 532 --MEGDLEKALQLHNEMV----EKGVL--PDVVTYSVLINGLNKQSRTREAKRLLLKLFY 583

Query: 308 RGIIPDVVVYS---------------SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
              +P  V Y                SLI G+C+ G + +A ++F S+  +   PD ++Y
Sbjct: 584 EESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAY 643

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMG 379
           N +I+ + +   + +A +LY EM+  G
Sbjct: 644 NIMIHGHCRAGDIRKAYTLYKEMVKSG 670



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 125/277 (45%), Gaps = 40/277 (14%)

Query: 197 ICYA--SIIDGLCKD----GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
           +CY+  S+ D + K       ++K   +    +  G  P    YN+++           +
Sbjct: 129 LCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATI------RS 182

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
           K N S A  + +E +           P+V +Y  +I   C    +D A  LF  M+++G 
Sbjct: 183 KRNISFAENVFKEMLESQ------VSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGC 236

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
           +P+VV Y++LIDGYC + +IDD  KL  S+  +G  P+  SYN +IN   +  +++E   
Sbjct: 237 LPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSF 296

Query: 371 LYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
           +  EM   G                      + LD   +N L+ G CK      A  +  
Sbjct: 297 VLTEMNRRG----------------------YSLDEVTYNTLIKGYCKEGNFHQALVMHA 334

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           ++ R+G  P+V+TYT +I  +C  G + +A + L  M
Sbjct: 335 EMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQM 371



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 120/293 (40%), Gaps = 24/293 (8%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++++AL     M+     P   +++SL+     ++       L E +  +GL PD  +  
Sbjct: 465 DVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYT 524

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+N +C    +  A      ++ K   PDVVT   LI GL  Q +  EA  L  K    
Sbjct: 525 ALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYE 584

Query: 187 DCRPN------VIPN-----VICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
           +  P+      +I N          S+I G C  G + +   +F  M G+   PD   YN
Sbjct: 585 ESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYN 644

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
            +I  +C A       G+   A  L++E V      G + H   ++  +++ +L K+  V
Sbjct: 645 IMIHGHCRA-------GDIRKAYTLYKEMVKS----GFLLH--TVTVIALVKALHKEGKV 691

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           ++   + + +     + +      L++     G +D    +   +  +G +P+
Sbjct: 692 NELNSVIVHVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLPN 744



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 112/259 (43%), Gaps = 42/259 (16%)

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES--EGCIPDTSSYNTLINSYSKIE 363
           K+  I+ + V   +L D Y        A  +F S++   + C   +S ++ ++ SYS++ 
Sbjct: 97  KTAQILAEDVAAKTLDDEY--------ASLVFKSLQETYDLCYSTSSVFDLVVKSYSRLS 148

Query: 364 KVEEALSLYGEMISMGVRP---DNSCILEAA-----------ELFRTLHNTKFELDLTVF 409
            +++ALS+     + G  P     + +L+A             +F+ +  ++   ++  +
Sbjct: 149 LIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTY 208

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           N L+ G C +  +  A  LF K+   G  PNVVTY  +I G C    I+  + LL  M  
Sbjct: 209 NILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMAL 268

Query: 470 KIRE-------------C----LKAIE-LLHKMAKRYVKPDEITVSILEELLNKDENCHE 511
           K  E             C    +K +  +L +M +R    DE+T + L +   K+ N H+
Sbjct: 269 KGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQ 328

Query: 512 CMNLLPSFLSRNQEESKLT 530
            + +    L      S +T
Sbjct: 329 ALVMHAEMLRHGLTPSVIT 347


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 107/350 (30%), Positives = 175/350 (50%), Gaps = 40/350 (11%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           + P+  + N +++  CK   V +A + LG+++++  S ++ T    IRGLC  G+  EA 
Sbjct: 183 VFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAV 242

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            L     A+      +P+V+ Y ++I GLCK     +       M  +G  PD F YN++
Sbjct: 243 RLVDGMRAY-----AVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTI 297

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           I  YC     ++A      A+   + FV           PD ++YCS+IN LC +  V++
Sbjct: 298 IDGYCKISMVQEATELLKDAV--FKGFV-----------PDQVTYCSLINGLCAEGDVER 344

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A ELF + +++GI PD+VVY+SL+ G CL G I  A ++   +  EGC PD  +YN +IN
Sbjct: 345 ALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVIN 404

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
              K+  + +A  +  + I  G  P                      D+  FN L+DG C
Sbjct: 405 GLCKMGNISDATVVMNDAIMKGYLP----------------------DVFTFNTLIDGYC 442

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           K  +L SA +L +++  YG  P+ +TY  ++ GLC  G + +  +   +M
Sbjct: 443 KRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEM 492



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 123/433 (28%), Positives = 196/433 (45%), Gaps = 67/433 (15%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           +DA   F+ M+H    P + +FN +L AL  +   +    L  ++   G+  +  + NI 
Sbjct: 169 HDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIW 228

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           +   C+   + +A V L   +R    PDVVT   LIRGLC +    EA     + +   C
Sbjct: 229 IRGLCEAGRLPEA-VRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGC 287

Query: 189 RPN-------------------------------VIPNVICYASIIDGLCKDGFVNKVRV 217
            P+                                +P+ + Y S+I+GLC +G V +   
Sbjct: 288 LPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALE 347

Query: 218 LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277
           LF + + +GI PD  VYNSL++  C        +G    AL++  E      E G  CHP
Sbjct: 348 LFNEAQAKGIKPDIVVYNSLVKGLCL-------QGLILHALQVMNEM----AEEG--CHP 394

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           D+ +Y  +IN LCK   +  A  +  D   +G +PDV  +++LIDGYC   ++D A +L 
Sbjct: 395 DIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLV 454

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397
             +   G  PDT +YN+++N   K  KV E    + EMI  G  P+              
Sbjct: 455 ERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNP------------- 501

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                      +N L++  C+S ++  A ++  K+ + G  P+ V++  +I G C  G +
Sbjct: 502 ---------ITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDL 552

Query: 458 EKAYDLLPDMEEK 470
           E AY L   +EEK
Sbjct: 553 EGAYLLFQKLEEK 565



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 120/446 (26%), Positives = 197/446 (44%), Gaps = 62/446 (13%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L DA+  F  M      P  P++N+++ AL    Y+     +  R+   G+ PD  +  I
Sbjct: 67  LRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTI 126

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
            +  FC     +   +AL R+LR +     V    ++ GL   G   +A  LF + +   
Sbjct: 127 RLRSFCL---TARPHIAL-RLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQML--- 179

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
              +V PN+  +  ++  LCK G V +  +L   +  RG+  + F YN  IR  C A   
Sbjct: 180 -HTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEA--- 235

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               G    A+ L    V+G     V   PDV++Y ++I  LCK  +  +A      M +
Sbjct: 236 ----GRLPEAVRL----VDGMRAYAV---PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMN 284

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           +G +PD   Y+++IDGYC +  + +A +L      +G +PD  +Y +LIN       VE 
Sbjct: 285 QGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVER 344

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           AL L+ E  + G++P                      D+ V+N LV GLC    +  A +
Sbjct: 345 ALELFNEAQAKGIKP----------------------DIVVYNSLVKGLCLQGLILHALQ 382

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA------------------YDLLPDMEE 469
           +  ++   G  P++ TY ++I GLC  G I  A                  ++ L D   
Sbjct: 383 VMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYC 442

Query: 470 KIRECLKAIELLHKMAKRYVKPDEIT 495
           K  +   A++L+ +M +  + PD IT
Sbjct: 443 KRLKLDSALQLVERMWEYGIAPDTIT 468



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 111/476 (23%), Positives = 201/476 (42%), Gaps = 97/476 (20%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + ++N+L+  L  K      +    R+   G LPD  + N +++ +CK+  V +A   
Sbjct: 254 PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATEL 313

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI----------- 193
           L   + K F PD VT   LI GLC +G    A  LF +  A   +P+++           
Sbjct: 314 LKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCL 373

Query: 194 --------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233
                               P++  Y  +I+GLCK G ++   V+  D   +G  PD F 
Sbjct: 374 QGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFT 433

Query: 234 YNSLIRVYCCAVNWEDAKGNTSAALEL--------HEEFVNGNGELGVI----------- 274
           +N+LI  YC  +  + A        E         +   +NG  + G +           
Sbjct: 434 FNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMI 493

Query: 275 ---CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
              CHP+ ++Y  +I + C+   +++A ++ + M   G+ PD V +++LI G+C  G ++
Sbjct: 494 LKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLE 553

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAA 391
            A  LF  +E +G      ++NTLI ++S    +  A  ++ EM+S G R D+       
Sbjct: 554 GAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADS------- 606

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
                            +  L+DG CK+  +  A+    ++ + G  P++ T+  +I  L
Sbjct: 607 ---------------YTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSL 651

Query: 452 CIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDE 507
            +                      +A+ ++H M K  V P+     +++ +LN D+
Sbjct: 652 TVN-----------------HRVFQAVGIIHIMVKIGVVPE-----VVDTILNADK 685



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 174/389 (44%), Gaps = 66/389 (16%)

Query: 44  VSTVEEKTKLLK-------------YLSE-NSKSGEVELNDALCFFNYMIHMQPTPFMPS 89
           +S V+E T+LLK             Y S  N    E ++  AL  FN        P +  
Sbjct: 304 ISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVV 363

Query: 90  FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149
           +NSL+  L  +   ++ + +   +   G  PD  + NI++N  CKM  +SDA V +   +
Sbjct: 364 YNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAI 423

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD 209
            K + PDV T   LI G C + K   A  L  +   +     + P+ I Y S+++GLCK 
Sbjct: 424 MKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEY----GIAPDTITYNSVLNGLCKA 479

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
           G VN+V   F +M  +G +P+   YN LI  +C +   E+A   +   +++ +E +    
Sbjct: 480 GKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEA---SKVIVKMSQEGL---- 532

Query: 270 ELGVICHPDVLSYCSIINSLCKD-------VLVDK------------------------- 297
                 HPD +S+ ++I   C++       +L  K                         
Sbjct: 533 ------HPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLN 586

Query: 298 ---AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
              A+++F +M S+G   D   Y  LIDG C    +D A    V +  +G IP  S++  
Sbjct: 587 MHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGR 646

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPD 383
           +INS +   +V +A+ +   M+ +GV P+
Sbjct: 647 VINSLTVNHRVFQAVGIIHIMVKIGVVPE 675



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 142/355 (40%), Gaps = 70/355 (19%)

Query: 164 IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
           IR     G+  +A   F +   F C P   P    Y +I+D L    + ++   +++ M 
Sbjct: 58  IRAYARAGRLRDAVDAFERMDLFACPP-AAP---AYNAIMDALVDAAYHDQAHKVYVRML 113

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
             G+ PD   +   +R +C              AL L          L  + H   ++YC
Sbjct: 114 AAGVSPDLHTHTIRLRSFCLT-------ARPHIALRL----------LRALPHRGAVAYC 156

Query: 284 SII-----------------------------------NSLCKDVLVDKAKELFLDMKSR 308
           +++                                   ++LCK   V +A  L   +  R
Sbjct: 157 TVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQR 216

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G+  ++  Y+  I G C  GR+ +A +L   + +   +PD  +YNTLI    K    +EA
Sbjct: 217 GMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYA-VPDVVTYNTLIRGLCKKSMPQEA 275

Query: 369 LSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFELDLTVFNCLVDG 415
           +     M++ G  PD+             S + EA EL +      F  D   +  L++G
Sbjct: 276 MHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLING 335

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           LC    +  A ELF +    G +P++V Y  ++ GLC++G I  A  ++ +M E+
Sbjct: 336 LCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEE 390



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 108/290 (37%), Gaps = 65/290 (22%)

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV--VYSSLIDGYCLMGRIDDARKL 336
           V +YC++I  L     VD         +SR + P  +  +Y + I  Y   GR+ DA   
Sbjct: 15  VPAYCALIRPLASAGRVDAVDAAVASARSR-LSPATIHPLYVASIRAYARAGRLRDAVDA 73

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------- 383
           F  ++   C P   +YN ++++       ++A  +Y  M++ GV PD             
Sbjct: 74  FERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCL 133

Query: 384 -------------------------------NSCILEAAELFRTLHNTKFELDLTVFNCL 412
                                          +    +A +LF  + +T    +L  FN +
Sbjct: 134 TARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKV 193

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIR 472
           +  LCK   +  A  L  K+ + G   N+ TY + I GLC  G + +A  L+  M     
Sbjct: 194 LHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGM----- 248

Query: 473 ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
                        + Y  PD +T + L   L K     E M+ L   +++
Sbjct: 249 -------------RAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQ 285


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 119/401 (29%), Positives = 189/401 (47%), Gaps = 30/401 (7%)

Query: 80  HMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVS 139
            M   P   ++N+L+  L G+    N + + + +     +PD V+  IL+   CK  G  
Sbjct: 151 EMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYK 210

Query: 140 DAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICY 199
            A   L  +  K  +PD+VT   ++ G+C +G+  +A        ++ C PN +     Y
Sbjct: 211 QAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVS----Y 266

Query: 200 ASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE 259
             ++ GLC          L  +M  +G  P+   +N LI   C        KG    ALE
Sbjct: 267 NIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLC-------RKGLVEPALE 319

Query: 260 LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSS 319
           + E+           C P+ LSY  ++++ CK   +DKA      M SRG  PD+V Y++
Sbjct: 320 VLEQIPKYG------CTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNT 373

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           L+   C  G +D A +L   ++ +GC P   SYNT+I+  +K  K +EAL L  EM+S G
Sbjct: 374 LLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKG 433

Query: 380 VRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           ++PD                I +A   F  + +     +  ++N ++ GLCK     SA 
Sbjct: 434 LQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAI 493

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +LF  +   G  PN  TYT++I GL  EG I++A DLL ++
Sbjct: 494 DLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDEL 534



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 108/402 (26%), Positives = 185/402 (46%), Gaps = 65/402 (16%)

Query: 147 RILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGL 206
           R++     PD  T   LI+ L   G+  EA     + V   C P+V+     Y +++ G 
Sbjct: 86  RLVGSARRPDAGTCAALIKKLSASGRTAEA-----RRVLAACGPDVMA----YNAMVAGY 136

Query: 207 CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266
           C  G ++  R L  +M    + PDA+ YN+LIR  C        +G T+ AL + +E + 
Sbjct: 137 CGAGQLDAARRLVAEMP---VEPDAYTYNTLIRGLC-------GRGRTANALAVLDEMLR 186

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
                   C PDV++Y  ++ + CK     +A +L  +M+ +G  PD+V Y+ +++G C 
Sbjct: 187 RR------CVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQ 240

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC 386
            GR+DDA +   ++ S GC P+T SYN ++      E+ E+A  L GEM   G  P+   
Sbjct: 241 EGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPN--- 297

Query: 387 ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTV 446
                              +  FN L+  LC+   +  A E+ +++P+YG  PN ++Y  
Sbjct: 298 -------------------VVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNP 338

Query: 447 MICGLCIEGGIEKAYDLL---------PDMEE---------KIRECLKAIELLHKMAKRY 488
           ++   C +  ++KA   L         PD+           +  E   A+ELLH++  + 
Sbjct: 339 LLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKG 398

Query: 489 VKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
             P  I+ + + + L K     E + LL   +S+  +   +T
Sbjct: 399 CAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIIT 440



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 176/394 (44%), Gaps = 59/394 (14%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD ++ N ++  +C   G      A   +      PD  T   LIRGLC +G+   A  +
Sbjct: 124 PDVMAYNAMVAGYC---GAGQLDAARRLVAEMPVEPDAYTYNTLIRGLCGRGRTANALAV 180

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             + +   C    +P+V+ Y  +++  CK     +   L  +M+ +G  PD   YN ++ 
Sbjct: 181 LDEMLRRRC----VPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVN 236

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C     +DA            EF+      G  C P+ +SY  ++  LC     + A+
Sbjct: 237 GICQEGRVDDAI-----------EFLKNLPSYG--CEPNTVSYNIVLKGLCTAERWEDAE 283

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           EL  +M  +G  P+VV ++ LI   C  G ++ A ++   I   GC P++ SYN L++++
Sbjct: 284 ELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAF 343

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            K +K+++A++    M+S G  PD                      +  +N L+  LC+S
Sbjct: 344 CKQKKMDKAMAFLDLMVSRGCYPD----------------------IVSYNTLLTALCRS 381

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIE 479
             +  A EL  +L   G  P +++Y  +I GL   G              K +E   A+E
Sbjct: 382 GEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAG--------------KTKE---ALE 424

Query: 480 LLHKMAKRYVKPDEITVSILEELLNKDENCHECM 513
           LL++M  + ++PD IT S +   L +++   + +
Sbjct: 425 LLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAI 458



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 155/377 (41%), Gaps = 67/377 (17%)

Query: 64  GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV 123
           G     +AL   + M+  +  P + ++  LL A   +  Y   + L + +   G  PD V
Sbjct: 170 GRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIV 229

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           + N+++N  C+   V DA   L  +      P+ V+   +++GLC   ++ +A  L  + 
Sbjct: 230 TYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEM 289

Query: 184 VAFDCRPNVI-------------------------------PNVICYASIIDGLCKDGFV 212
               C PNV+                               PN + Y  ++   CK   +
Sbjct: 290 GQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKM 349

Query: 213 NKVRVLFLD-MKGRGIYPDAFVYNSLIRVYC-------------------CA-------- 244
           +K  + FLD M  RG YPD   YN+L+   C                   CA        
Sbjct: 350 DKA-MAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNT 408

Query: 245 -VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
            ++     G T  ALEL  E V+          PD+++Y +I   LC++  ++ A   F 
Sbjct: 409 VIDGLTKAGKTKEALELLNEMVSKG------LQPDIITYSTIAAGLCREDRIEDAIRAFG 462

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            ++  GI P+ V+Y+++I G C       A  LF  +   GC+P+ S+Y  LI   +   
Sbjct: 463 KVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEG 522

Query: 364 KVEEALSLYGEMISMGV 380
            ++EA  L  E+ S GV
Sbjct: 523 LIKEARDLLDELCSRGV 539



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 118/262 (45%), Gaps = 17/262 (6%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + +FN L+  L  K      + + E++   G  P+ +S N L++ FCK   +  A   
Sbjct: 296 PNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAF 355

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           L  ++ +   PD+V+   L+  LC  G+   A  L  +     C P +I     Y ++ID
Sbjct: 356 LDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLIS----YNTVID 411

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           GL K G   +   L  +M  +G+ PD   Y+++    C     EDA     A  ++ +  
Sbjct: 412 GLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDA---IRAFGKVQD-- 466

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
                 +G+   P+ + Y +II  LCK      A +LF  M   G +P+   Y+ LI+G 
Sbjct: 467 ------MGI--RPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGL 518

Query: 325 CLMGRIDDARKLFVSIESEGCI 346
              G I +AR L   + S G +
Sbjct: 519 AYEGLIKEARDLLDELCSRGVV 540



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 81/179 (45%), Gaps = 6/179 (3%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           +SGEV++  A+   + +      P + S+N+++  L         + L   + + GL PD
Sbjct: 380 RSGEVDV--AVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPD 437

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            ++ + +    C+   + DA  A G++      P+ V    +I GLC + +   A  LF 
Sbjct: 438 IITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFA 497

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
             +   C    +PN   Y  +I+GL  +G + + R L  ++  RG+   + +    IR+
Sbjct: 498 YMIGNGC----MPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVVRKSLINKGAIRL 552


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 120/452 (26%), Positives = 211/452 (46%), Gaps = 53/452 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ P  V+ N ++N  CK   +         ++ +   PDVVT   LI  LC  G   EA
Sbjct: 32  GVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEA 91

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM--KGRGIYPDAFVY 234
             L     +  C    +PNV+ Y+ +I+GLCK G +++ R L  +M  K   + P+   Y
Sbjct: 92  RRLHGDMSSRGC----VPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITY 147

Query: 235 NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294
           NS +   C        +  T+ A EL     +G+  +     PD +++ ++I+ LCK   
Sbjct: 148 NSFLDGLC-------KQSMTAEACELMRSLRDGSLRV----SPDTVTFSTLIDGLCKCGQ 196

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           +D+A  +F DM + G +P+V+ Y++L++G C   +++ A  +  S+  +G  PD  +Y+ 
Sbjct: 197 IDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSV 256

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPD--------------NSC----ILEAAELFRT 396
           L++++ K  +V+EAL L   M S G  P+               +C      +A+ LF  
Sbjct: 257 LVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEE 316

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           +     + D+  F  L+DGLCK+ ++ +A ++   +   G  PNVVTY  ++ GLC  G 
Sbjct: 317 MVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGR 376

Query: 457 IEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSI 498
           IE+A   L +M                    +      A++L+ ++      PD +T +I
Sbjct: 377 IEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNI 436

Query: 499 LEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           L + L K     + + +L   + +  +    T
Sbjct: 437 LVDGLWKSGKTEQAITVLEEMVGKGHQPDSFT 468



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 107/387 (27%), Positives = 178/387 (45%), Gaps = 46/387 (11%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICL--SERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142
           P + ++NS L  L  +        L  S R  ++ + PD V+ + L++  CK   + +A 
Sbjct: 142 PNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEAC 201

Query: 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202
                ++   + P+V+T   L+ GLC   K   A  +    V       V P+VI Y+ +
Sbjct: 202 SVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMV----DKGVTPDVITYSVL 257

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRG-----IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
           +D  CK   V++   L   M  RG     + PD   +N LI   C A N+E A       
Sbjct: 258 VDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASA----- 312

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
             L EE V  N        PDV+++ ++I+ LCK   V+ A+++   M + G+ P+VV Y
Sbjct: 313 --LFEEMVAKN------LQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTY 364

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           ++L+ G C  GRI++A +    + S GC+PD+ +Y +L+ +  +  + ++AL L  E+ S
Sbjct: 365 NALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKS 424

Query: 378 MGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
            G  PD                         +N LVDGL KS +   A  + +++   G 
Sbjct: 425 FGWDPDT----------------------VTYNILVDGLWKSGKTEQAITVLEEMVGKGH 462

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLL 464
           +P+  T+     GL   G +    +LL
Sbjct: 463 QPDSFTFAACFSGLHRSGNLAGTMELL 489



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 154/324 (47%), Gaps = 22/324 (6%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++++A   F+ MI     P + ++N+L+  L           + E +   G+ PD ++ +
Sbjct: 196 QIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYS 255

Query: 127 ILMNCFCKMIGVSDAFVALGRILRK-----VFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
           +L++ FCK   V +A   L  +  +     V  PD VT   LI G C  G F +AS LF 
Sbjct: 256 VLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFE 315

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           + VA     N+ P+V+ + ++IDGLCK G V   R +   M   G+ P+   YN+L+   
Sbjct: 316 EMVA----KNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGL 371

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C         G    A +  EE V+        C PD ++Y S++ +LC+    D A +L
Sbjct: 372 C-------KSGRIEEACQFLEEMVSSG------CVPDSITYGSLVYALCRASRTDDALQL 418

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
             ++KS G  PD V Y+ L+DG    G+ + A  +   +  +G  PD+ ++    +   +
Sbjct: 419 VSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHR 478

Query: 362 IEKVEEALSLYGEMISMGVRPDNS 385
              +   + L   +++ G+ PD +
Sbjct: 479 SGNLAGTMELLRVVLAKGMLPDAT 502


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 107/350 (30%), Positives = 175/350 (50%), Gaps = 40/350 (11%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           + P+  + N +++  CK   V +A + LG+++++  S ++ T    IRGLC  G+  EA 
Sbjct: 182 VFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAV 241

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            L     A+      +P+V+ Y ++I GLCK     +       M  +G  PD F YN++
Sbjct: 242 RLVDGMRAY-----AVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTI 296

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           I  YC     ++A      A+   + FV           PD ++YCS+IN LC +  V++
Sbjct: 297 IDGYCKISMVQEATELLKDAV--FKGFV-----------PDQVTYCSLINGLCAEGDVER 343

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A ELF + +++GI PD+VVY+SL+ G CL G I  A ++   +  EGC PD  +YN +IN
Sbjct: 344 ALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVIN 403

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
              K+  + +A  +  + I  G  P                      D+  FN L+DG C
Sbjct: 404 GLCKMGNISDATVVMNDAIMKGYLP----------------------DVFTFNTLIDGYC 441

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           K  +L SA +L +++  YG  P+ +TY  ++ GLC  G + +  +   +M
Sbjct: 442 KRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEM 491



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 123/433 (28%), Positives = 196/433 (45%), Gaps = 67/433 (15%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           +DA   F+ M+H    P + +FN +L AL  +   +    L  ++   G+  +  + NI 
Sbjct: 168 HDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIW 227

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           +   C+   + +A V L   +R    PDVVT   LIRGLC +    EA     + +   C
Sbjct: 228 IRGLCEAGRLPEA-VRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGC 286

Query: 189 RPN-------------------------------VIPNVICYASIIDGLCKDGFVNKVRV 217
            P+                                +P+ + Y S+I+GLC +G V +   
Sbjct: 287 LPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALE 346

Query: 218 LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277
           LF + + +GI PD  VYNSL++  C        +G    AL++  E      E G  CHP
Sbjct: 347 LFNEAQAKGIKPDIVVYNSLVKGLCL-------QGLILHALQVMNEM----AEEG--CHP 393

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           D+ +Y  +IN LCK   +  A  +  D   +G +PDV  +++LIDGYC   ++D A +L 
Sbjct: 394 DIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLV 453

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397
             +   G  PDT +YN+++N   K  KV E    + EMI  G  P+              
Sbjct: 454 ERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNP------------- 500

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                      +N L++  C+S ++  A ++  K+ + G  P+ V++  +I G C  G +
Sbjct: 501 ---------ITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDL 551

Query: 458 EKAYDLLPDMEEK 470
           E AY L   +EEK
Sbjct: 552 EGAYLLFQKLEEK 564



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 120/446 (26%), Positives = 197/446 (44%), Gaps = 62/446 (13%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L DA+  F  M      P  P++N+++ AL    Y+     +  R+   G+ PD  +  I
Sbjct: 66  LRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTI 125

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
            +  FC     +   +AL R+LR +     V    ++ GL   G   +A  LF + +   
Sbjct: 126 RLRSFCL---TARPHIAL-RLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQML--- 178

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
              +V PN+  +  ++  LCK G V +  +L   +  RG+  + F YN  IR  C A   
Sbjct: 179 -HTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEA--- 234

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               G    A+ L    V+G     V   PDV++Y ++I  LCK  +  +A      M +
Sbjct: 235 ----GRLPEAVRL----VDGMRAYAV---PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMN 283

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           +G +PD   Y+++IDGYC +  + +A +L      +G +PD  +Y +LIN       VE 
Sbjct: 284 QGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVER 343

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           AL L+ E  + G++P                      D+ V+N LV GLC    +  A +
Sbjct: 344 ALELFNEAQAKGIKP----------------------DIVVYNSLVKGLCLQGLILHALQ 381

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA------------------YDLLPDMEE 469
           +  ++   G  P++ TY ++I GLC  G I  A                  ++ L D   
Sbjct: 382 VMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYC 441

Query: 470 KIRECLKAIELLHKMAKRYVKPDEIT 495
           K  +   A++L+ +M +  + PD IT
Sbjct: 442 KRLKLDSALQLVERMWEYGIAPDTIT 467



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 111/476 (23%), Positives = 201/476 (42%), Gaps = 97/476 (20%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + ++N+L+  L  K      +    R+   G LPD  + N +++ +CK+  V +A   
Sbjct: 253 PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATEL 312

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI----------- 193
           L   + K F PD VT   LI GLC +G    A  LF +  A   +P+++           
Sbjct: 313 LKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCL 372

Query: 194 --------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233
                               P++  Y  +I+GLCK G ++   V+  D   +G  PD F 
Sbjct: 373 QGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFT 432

Query: 234 YNSLIRVYCCAVNWEDAKGNTSAALEL--------HEEFVNGNGELGVI----------- 274
           +N+LI  YC  +  + A        E         +   +NG  + G +           
Sbjct: 433 FNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMI 492

Query: 275 ---CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
              CHP+ ++Y  +I + C+   +++A ++ + M   G+ PD V +++LI G+C  G ++
Sbjct: 493 LKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLE 552

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAA 391
            A  LF  +E +G      ++NTLI ++S    +  A  ++ EM+S G R D+       
Sbjct: 553 GAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADS------- 605

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
                            +  L+DG CK+  +  A+    ++ + G  P++ T+  +I  L
Sbjct: 606 ---------------YTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSL 650

Query: 452 CIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDE 507
            +                      +A+ ++H M K  V P+     +++ +LN D+
Sbjct: 651 TVN-----------------HRVFQAVGIIHIMVKIGVVPE-----VVDTILNADK 684



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 174/389 (44%), Gaps = 66/389 (16%)

Query: 44  VSTVEEKTKLLK-------------YLSE-NSKSGEVELNDALCFFNYMIHMQPTPFMPS 89
           +S V+E T+LLK             Y S  N    E ++  AL  FN        P +  
Sbjct: 303 ISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVV 362

Query: 90  FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149
           +NSL+  L  +   ++ + +   +   G  PD  + NI++N  CKM  +SDA V +   +
Sbjct: 363 YNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAI 422

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD 209
            K + PDV T   LI G C + K   A  L  +   +     + P+ I Y S+++GLCK 
Sbjct: 423 MKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEY----GIAPDTITYNSVLNGLCKA 478

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
           G VN+V   F +M  +G +P+   YN LI  +C +   E+A   +   +++ +E +    
Sbjct: 479 GKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEA---SKVIVKMSQEGL---- 531

Query: 270 ELGVICHPDVLSYCSIINSLCKD-------VLVDK------------------------- 297
                 HPD +S+ ++I   C++       +L  K                         
Sbjct: 532 ------HPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLN 585

Query: 298 ---AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
              A+++F +M S+G   D   Y  LIDG C    +D A    V +  +G IP  S++  
Sbjct: 586 MHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGR 645

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPD 383
           +INS +   +V +A+ +   M+ +GV P+
Sbjct: 646 VINSLTVNHRVFQAVGIIHIMVKIGVVPE 674



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 142/355 (40%), Gaps = 70/355 (19%)

Query: 164 IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
           IR     G+  +A   F +   F C P   P    Y +I+D L    + ++   +++ M 
Sbjct: 57  IRAYARAGRLRDAVDAFERMDLFACPP-AAP---AYNAIMDALVDAAYHDQAHKVYVRML 112

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
             G+ PD   +   +R +C              AL L          L  + H   ++YC
Sbjct: 113 AAGVSPDLHTHTIRLRSFCLT-------ARPHIALRL----------LRALPHRGAVAYC 155

Query: 284 SII-----------------------------------NSLCKDVLVDKAKELFLDMKSR 308
           +++                                   ++LCK   V +A  L   +  R
Sbjct: 156 TVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQR 215

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G+  ++  Y+  I G C  GR+ +A +L   + +   +PD  +YNTLI    K    +EA
Sbjct: 216 GMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYA-VPDVVTYNTLIRGLCKKSMPQEA 274

Query: 369 LSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFELDLTVFNCLVDG 415
           +     M++ G  PD+             S + EA EL +      F  D   +  L++G
Sbjct: 275 MHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLING 334

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           LC    +  A ELF +    G +P++V Y  ++ GLC++G I  A  ++ +M E+
Sbjct: 335 LCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEE 389



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 108/290 (37%), Gaps = 65/290 (22%)

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV--VYSSLIDGYCLMGRIDDARKL 336
           V +YC++I  L     VD         +SR + P  +  +Y + I  Y   GR+ DA   
Sbjct: 14  VPAYCALIRPLASAGRVDAVDAAVASARSR-LSPATIHPLYVASIRAYARAGRLRDAVDA 72

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------- 383
           F  ++   C P   +YN ++++       ++A  +Y  M++ GV PD             
Sbjct: 73  FERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCL 132

Query: 384 -------------------------------NSCILEAAELFRTLHNTKFELDLTVFNCL 412
                                          +    +A +LF  + +T    +L  FN +
Sbjct: 133 TARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKV 192

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIR 472
           +  LCK   +  A  L  K+ + G   N+ TY + I GLC  G + +A  L+  M     
Sbjct: 193 LHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGM----- 247

Query: 473 ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
                        + Y  PD +T + L   L K     E M+ L   +++
Sbjct: 248 -------------RAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQ 284


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 122/416 (29%), Positives = 200/416 (48%), Gaps = 35/416 (8%)

Query: 53  LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSER 112
           L+ YL +N +S E     A   F+ M+     P   ++ +LL   A +   V    L + 
Sbjct: 314 LMGYLCKNGRSME-----ARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDM 368

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +   G+ PD    NIL+  + K   V DA +   ++ R+  +PD VT G ++  LCM GK
Sbjct: 369 MVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGK 428

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
             +A   F + ++      + P+ + + ++I GLC     +K   L ++M GRGI P+  
Sbjct: 429 VDDAMAQFGRLIS----EGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNI 484

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            +N+L+   C        +G  + A  + +  V       V    DV++Y ++I+  C  
Sbjct: 485 FFNTLLNHLC-------KEGMVARAKNIFDLMVR------VDVQRDVITYNTLIDGYCLH 531

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             VD+A +L   M   G+ P+ V Y+++I+GYC  GRI+DA  LF  + S+G  P   +Y
Sbjct: 532 GKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTY 591

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHN 399
           +T++    +  +   A  LY  MI  G++ D             N+C  +A  +F+ L+ 
Sbjct: 592 STILQGLFQARRTAAAKELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYL 651

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
             F L+   FN ++D L K  R   A +LF  L   G  PNVVTY +M+  L  +G
Sbjct: 652 IDFHLENRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQG 707



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 124/456 (27%), Positives = 206/456 (45%), Gaps = 69/456 (15%)

Query: 51  TKLLKYLSENSKSGEVELNDALCFFNYMIHMQPT-----PFMPSFNSLLGAL--AGKKYY 103
           T LLK L + ++S +     AL   + M+    T     P + S+N+++  L   G++  
Sbjct: 166 TILLKGLCDENRSQQ-----ALHLLHTMMVADDTRGGYPPDVVSYNTVINGLLREGRQLD 220

Query: 104 VNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCL 163
             +    + L+  GL PD V+ N +++   K   +  A V L R+++    P+ +T   L
Sbjct: 221 TAYHLFDQMLDQ-GLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSL 279

Query: 164 IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
           + G C  GK  +A G+F +     CR  V P+V  Y +++  LCK+G   + R +F  M 
Sbjct: 280 LHGYCSSGKPNDAIGVFKRM----CRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMV 335

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
            RG  P++  Y +L+  Y         +G+      L +  V  NG       PD   + 
Sbjct: 336 KRGHKPNSATYGTLLHGYA-------TEGSLVKMHHLLDMMVR-NG-----IQPDHYIFN 382

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
            +I +  K   VD A  LF  M+ +G+ PD V Y  ++D  C++G++DDA   F  + SE
Sbjct: 383 ILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISE 442

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFE 403
           G  PD   +  LI+     +K ++A  L  EMI  G+ P+N                   
Sbjct: 443 GLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNN------------------- 483

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
                FN L++ LCK   +  A  +F  + R   + +V+TY  +I G C+ G +++A   
Sbjct: 484 ---IFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEA--- 537

Query: 464 LPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                          +LL  M    VKP+E+T + +
Sbjct: 538 --------------AKLLEGMVLDGVKPNEVTYNTM 559



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 108/425 (25%), Positives = 200/425 (47%), Gaps = 41/425 (9%)

Query: 59  ENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIG- 117
           + + +   + + A   F+ ++H   T  +   N  L   A     V  I L  R+  +  
Sbjct: 26  QEAAAAGTDSHHAHHAFDELLHRPTTSSIVDLNRALSDAARHSPAVA-ISLFRRMVMVAR 84

Query: 118 --LLPDFVSLNILMNCFCKMIGVSD-AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFT 174
             + P+ ++ +++++C C  +G  D AF ALGR++R  ++ + +T   L++ LC + + +
Sbjct: 85  PKVPPNLITYSVVIDC-CSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALCDKKRTS 143

Query: 175 EASGL-FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM----KGRGIYP 229
           EA  +   +     C     PNV  Y  ++ GLC +    +   L   M      RG YP
Sbjct: 144 EAMDIALRRMPVLGC----TPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYP 199

Query: 230 -DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
            D   YN++I      +  E  + +T  A  L ++ ++          PDV++Y SII++
Sbjct: 200 PDVVSYNTVIN----GLLREGRQLDT--AYHLFDQMLDQG------LSPDVVTYNSIISA 247

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           L K   +DKA  + + M   G +P+ + ++SL+ GYC  G+ +DA  +F  +  +G  PD
Sbjct: 248 LSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPD 307

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFR 395
             +YNTL+    K  +  EA  ++  M+  G +P+++              +++   L  
Sbjct: 308 VFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLD 367

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            +     + D  +FN L+    K  ++  A  LF K+ R G  P+ VTY +++  LC+ G
Sbjct: 368 MMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVG 427

Query: 456 GIEKA 460
            ++ A
Sbjct: 428 KVDDA 432



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 147/331 (44%), Gaps = 40/331 (12%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +++DA+  F  +I    TP    F +L+  L  +  +     L+  +   G+ P+ +  N
Sbjct: 428 KVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFN 487

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+N  CK   V+ A      ++R     DV+T   LI G C+ GK  EA+ L    V  
Sbjct: 488 TLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVL- 546

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                V PN + Y ++I+G CK+G +     LF  M  +G+ P    Y+++++    A  
Sbjct: 547 ---DGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARR 603

Query: 247 WEDAKGNTSAALELHEEFVNGN-----GELGVI--------CHPDVL------------- 280
                  T+AA EL+   +        G   +I        C  D L             
Sbjct: 604 -------TAAAKELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHL 656

Query: 281 ---SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
              ++  +I++L K    D+AK+LF  + +RG++P+VV Y  ++      G +++   LF
Sbjct: 657 ENRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLF 716

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           +S+E  GC  ++   N L+    +  +V +A
Sbjct: 717 LSLEKNGCTANSRMLNALVGKLLQKGEVRKA 747



 Score = 43.1 bits (100), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 23/122 (18%)

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406
           P+  +Y+ +I+  S++  ++ A +  G +I  G                      +  + 
Sbjct: 89  PNLITYSVVIDCCSRVGHLDLAFAALGRVIRSG----------------------WTAEA 126

Query: 407 TVFNCLVDGLCKSWRLRSAWEL-FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
             F+ L+  LC   R   A ++  +++P  G  PNV +YT+++ GLC E   ++A  LL 
Sbjct: 127 ITFSPLLKALCDKKRTSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLH 186

Query: 466 DM 467
            M
Sbjct: 187 TM 188


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 119/401 (29%), Positives = 189/401 (47%), Gaps = 30/401 (7%)

Query: 80  HMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVS 139
            M   P   ++N+L+  L G+    N + + + +     +PD V+  IL+   CK  G  
Sbjct: 25  EMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYK 84

Query: 140 DAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICY 199
            A   L  +  K  +PD+VT   ++ G+C +G+  +A        ++ C PN +     Y
Sbjct: 85  QAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVS----Y 140

Query: 200 ASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE 259
             ++ GLC          L  +M  +G  P+   +N LI   C        KG    ALE
Sbjct: 141 NIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLC-------RKGLVEPALE 193

Query: 260 LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSS 319
           + E+           C P+ LSY  ++++ CK   +DKA      M SRG  PD+V Y++
Sbjct: 194 VLEQIPKYG------CTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNT 247

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           L+   C  G +D A +L   ++ +GC P   SYNT+I+  +K  K +EAL L  EM+S G
Sbjct: 248 LLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKG 307

Query: 380 VRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           ++PD                I +A   F  + +     +  ++N ++ GLCK     SA 
Sbjct: 308 LQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAI 367

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +LF  +   G  PN  TYT++I GL  EG I++A DLL ++
Sbjct: 368 DLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDEL 408



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 165/352 (46%), Gaps = 56/352 (15%)

Query: 197 ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSA 256
           + Y +++ G C  G ++  R L  +M    + PDA+ YN+LIR  C        +G T+ 
Sbjct: 1   MAYNAMVAGYCGAGQLDAARRLVAEMP---VEPDAYTYNTLIRGLC-------GRGRTAN 50

Query: 257 ALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV 316
           AL + +E +         C PDV++Y  ++ + CK     +A +L  +M+ +G  PD+V 
Sbjct: 51  ALAVLDEMLRRR------CVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVT 104

Query: 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
           Y+ +++G C  GR+DDA +   ++ S GC P+T SYN ++      E+ E+A  L GEM 
Sbjct: 105 YNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMG 164

Query: 377 SMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
             G  P+                      +  FN L+  LC+   +  A E+ +++P+YG
Sbjct: 165 QKGCPPN----------------------VVTFNMLISFLCRKGLVEPALEVLEQIPKYG 202

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLL---------PDMEE---------KIRECLKAI 478
             PN ++Y  ++   C +  ++KA   L         PD+           +  E   A+
Sbjct: 203 CTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAV 262

Query: 479 ELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           ELLH++  +   P  I+ + + + L K     E + LL   +S+  +   +T
Sbjct: 263 ELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIIT 314



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 164/359 (45%), Gaps = 56/359 (15%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
           PD  T   LIRGLC +G+   A  +  + +   C    +P+V+ Y  +++  CK     +
Sbjct: 30  PDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRC----VPDVVTYTILLEATCKRSGYKQ 85

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
              L  +M+ +G  PD   YN ++   C     +DA            EF+      G  
Sbjct: 86  AMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAI-----------EFLKNLPSYG-- 132

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
           C P+ +SY  ++  LC     + A+EL  +M  +G  P+VV ++ LI   C  G ++ A 
Sbjct: 133 CEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPAL 192

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
           ++   I   GC P++ SYN L++++ K +K+++A++    M+S G  PD           
Sbjct: 193 EVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPD----------- 241

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
                      +  +N L+  LC+S  +  A EL  +L   G  P +++Y  +I GL   
Sbjct: 242 -----------IVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKA 290

Query: 455 GGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECM 513
           G              K +E   A+ELL++M  + ++PD IT S +   L +++   + +
Sbjct: 291 G--------------KTKE---ALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAI 332



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 153/374 (40%), Gaps = 67/374 (17%)

Query: 64  GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV 123
           G     +AL   + M+  +  P + ++  LL A   +  Y   + L + +   G  PD V
Sbjct: 44  GRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIV 103

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           + N+++N  C+   V DA   L  +      P+ V+   +++GLC   ++ +A  L  + 
Sbjct: 104 TYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEM 163

Query: 184 VAFDCRPNVI-------------------------------PNVICYASIIDGLCKDGFV 212
               C PNV+                               PN + Y  ++   CK   +
Sbjct: 164 GQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKM 223

Query: 213 NKVRVLFLD-MKGRGIYPDAFVYNSLIRVYC-------------------CA-------- 244
           +K  + FLD M  RG YPD   YN+L+   C                   CA        
Sbjct: 224 DKA-MAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNT 282

Query: 245 -VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
            ++     G T  ALEL  E V+          PD+++Y +I   LC++  ++ A   F 
Sbjct: 283 VIDGLTKAGKTKEALELLNEMVSKG------LQPDIITYSTIAAGLCREDRIEDAIRAFG 336

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            ++  GI P+ V+Y+++I G C       A  LF  +   GC+P+ S+Y  LI   +   
Sbjct: 337 KVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEG 396

Query: 364 KVEEALSLYGEMIS 377
            ++EA  L  E+ S
Sbjct: 397 LIKEARDLLDELCS 410



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 74/165 (44%), Gaps = 6/165 (3%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           +SGEV++  A+   + +      P + S+N+++  L         + L   + + GL PD
Sbjct: 254 RSGEVDV--AVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPD 311

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            ++ + +    C+   + DA  A G++      P+ V    +I GLC + +   A  LF 
Sbjct: 312 IITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFA 371

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
             +   C    +PN   Y  +I+GL  +G + + R L  ++  R 
Sbjct: 372 YMIGNGC----MPNESTYTILIEGLAYEGLIKEARDLLDELCSRA 412


>gi|223635627|sp|Q9SZ20.2|PP339_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g26800
          Length = 514

 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 129/449 (28%), Positives = 212/449 (47%), Gaps = 48/449 (10%)

Query: 66  VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNT---IGLLPDF 122
           ++ +DA   F  M +  P P +  FN +L A+A  + Y   I L +R+     I + PD 
Sbjct: 64  IKFDDAFHLFVLMAYSYPLPSIVEFNKVLTAIAKMQMYDVVINLWKRIENAEGIEISPDL 123

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
            + NIL+NCFC+    S A   LG++++    PD+VT   L+ G C+     +A  +  +
Sbjct: 124 YTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQ 183

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
                 + +V+ + I    +ID LCK+  V     +   MK RGI P+   Y+SLI   C
Sbjct: 184 MEKMGIKRDVVVDTI----LIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLC 239

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGN--------------GELGVI-----------CHP 277
            +    DA+       E+  + +N N              G+L  +             P
Sbjct: 240 KSGRLADAERRLH---EMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDP 296

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           +V +Y S+I  LC    VD+A ++   M S+G  P+VV YS+L +G+    R+DD  KL 
Sbjct: 297 NVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLL 356

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------N 384
             +   G   +T S NTLI  Y +  K++ AL ++G M S G+ P+             N
Sbjct: 357 DDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFAN 416

Query: 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
             + +A   F  +  T+ +LD+  +  ++ G+CK+  ++ A++LF KL     EP+   Y
Sbjct: 417 GEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLKFKRVEPDFKAY 476

Query: 445 TVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
           T+MI  L   G   +A  L    ++ +R+
Sbjct: 477 TIMIAELNRAGMRTEADALNRFYQKHVRQ 505



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 85/189 (44%), Gaps = 37/189 (19%)

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL 388
           + DDA  LFV +     +P    +N ++ + +K++       +Y  +I++  R +N+  +
Sbjct: 65  KFDDAFHLFVLMAYSYPLPSIVEFNKVLTAIAKMQ-------MYDVVINLWKRIENAEGI 117

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
           E +             DL   N LV+  C+ ++  SA     K+ + G EP++VT + ++
Sbjct: 118 EISP------------DLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLV 165

Query: 449 CGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVK 490
            G C+   I+ A  +   ME+                  K R  + A+E+L +M  R + 
Sbjct: 166 NGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGIS 225

Query: 491 PDEITVSIL 499
           P+ +T S L
Sbjct: 226 PNVVTYSSL 234


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/392 (28%), Positives = 186/392 (47%), Gaps = 57/392 (14%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD  + N L+N FCKM  + DA   L R+  K FSPD VT   +I  LC +GK   A  +
Sbjct: 152 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 211

Query: 180 FTKFVAFDCRPNVI-------------------------------PNVICYASIIDGLCK 208
             + ++ +C+P VI                               P++  Y +II G+CK
Sbjct: 212 LDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCK 271

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           +G V++   +  +++ +G  PD   YN L+R       WE+ +   +             
Sbjct: 272 EGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEK------- 324

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                 C P+V++Y  +I +LC+D  +++A  L   MK +G+ PD   Y  LI  +C  G
Sbjct: 325 ------CDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREG 378

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---- 384
           R+D A +   ++ S+GC+PD  +YNT++ +  K  K ++AL ++G++  +G  P++    
Sbjct: 379 RLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYN 438

Query: 385 ---SCILEAAELFRTLH------NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
              S +  + +  R LH      +   + D   +N ++  LC+   +  A+EL   +   
Sbjct: 439 TMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSC 498

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
              P+VVTY +++ G C    IE A D+L  M
Sbjct: 499 EFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSM 530



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 173/394 (43%), Gaps = 49/394 (12%)

Query: 133 CKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNV 192
           C+     ++   L  ++RK ++PDV+    LI+G        +A  +      F      
Sbjct: 96  CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEKFGQ---- 151

Query: 193 IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252
            P+V  Y ++I+G CK   ++    +   M+ +   PD   YN +I   C       ++G
Sbjct: 152 -PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLC-------SRG 203

Query: 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
               AL++ ++ ++ N      C P V++Y  +I +   +  VD+A +L  +M SRG+ P
Sbjct: 204 KLDLALKVLDQLLSDN------CQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKP 257

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
           D+  Y+++I G C  G +D A ++  ++E +GC PD  SYN L+ +     K EE   L 
Sbjct: 258 DMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLM 317

Query: 373 GEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            +M S    P+             +  I EA  L + +       D   ++ L+   C+ 
Sbjct: 318 TKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCRE 377

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE---------- 469
            RL  A E  + +   G  P++V Y  ++  LC  G  ++A ++   + E          
Sbjct: 378 GRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSY 437

Query: 470 --------KIRECLKAIELLHKMAKRYVKPDEIT 495
                      + ++A+ ++ +M    + PDEIT
Sbjct: 438 NTMFSALWSSGDKIRALHMILEMVSNGIDPDEIT 471



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 151/316 (47%), Gaps = 25/316 (7%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + S+N LL AL  +  +     L  ++ +    P+ V+ +IL+   C+   + +A   
Sbjct: 292 PDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNL 351

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           L  +  K  +PD  +   LI   C +G+   A       ++  C    +P+++ Y +++ 
Sbjct: 352 LKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGC----LPDIVNYNTVLA 407

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
            LCK+G  ++   +F  +   G  P++  YN++         W  + G+   AL +  E 
Sbjct: 408 TLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSAL-----W--SSGDKIRALHMILEM 460

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           V+ NG       PD ++Y S+I+ LC++ +VDKA EL +DM+S    P VV Y+ ++ G+
Sbjct: 461 VS-NG-----IDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGF 514

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           C   RI+DA  +  S+   GC P+ ++Y  LI          EA+ L  +++ +    + 
Sbjct: 515 CKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRINAISEY 574

Query: 385 SCILEAAELFRTLHNT 400
           S        F+ LH T
Sbjct: 575 S--------FKRLHRT 582



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 117/279 (41%), Gaps = 64/279 (22%)

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS-------------------------- 318
           I +  C+     ++  L   M  +G  PDV++ +                          
Sbjct: 91  IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEKFG 150

Query: 319 --------SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
                   +LI+G+C M RIDDA ++   + S+   PDT +YN +I S     K++ AL 
Sbjct: 151 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALK 210

Query: 371 LYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
           +  +++S   +P                 + EA +L   + +   + D+  +N ++ G+C
Sbjct: 211 VLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMC 270

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKA 477
           K   +  A+E+ + L   G EP+V++Y +++  L  +G  E+         EK       
Sbjct: 271 KEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEG--------EK------- 315

Query: 478 IELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
             L+ KM      P+ +T SIL   L +D    E MNLL
Sbjct: 316 --LMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLL 352


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 107/350 (30%), Positives = 175/350 (50%), Gaps = 40/350 (11%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           + P+  + N +++  CK   V +A + LG+++++  S ++ T    IRGLC  G+  EA 
Sbjct: 185 VFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAV 244

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            L     A+      +P+V+ Y ++I GLCK     +       M  +G  PD F YN++
Sbjct: 245 RLVDGMRAY-----AVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTI 299

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           I  YC     ++A      A+   + FV           PD ++YCS+IN LC +  V++
Sbjct: 300 IDGYCKISMVQEATELLKDAV--FKGFV-----------PDQVTYCSLINGLCAEGDVER 346

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A ELF + +++GI PD+VVY+SL+ G CL G I  A ++   +  EGC PD  +YN +IN
Sbjct: 347 ALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVIN 406

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
              K+  + +A  +  + I  G  P                      D+  FN L+DG C
Sbjct: 407 GLCKMGNISDATVVMNDAIMKGYLP----------------------DVFTFNTLIDGYC 444

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           K  +L SA +L +++  YG  P+ +TY  ++ GLC  G + +  +   +M
Sbjct: 445 KRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEM 494



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 123/433 (28%), Positives = 196/433 (45%), Gaps = 67/433 (15%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           +DA   F+ M+H    P + +FN +L AL  +   +    L  ++   G+  +  + NI 
Sbjct: 171 HDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIW 230

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           +   C+   + +A V L   +R    PDVVT   LIRGLC +    EA     + +   C
Sbjct: 231 IRGLCEAGRLPEA-VRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGC 289

Query: 189 RPN-------------------------------VIPNVICYASIIDGLCKDGFVNKVRV 217
            P+                                +P+ + Y S+I+GLC +G V +   
Sbjct: 290 LPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALE 349

Query: 218 LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277
           LF + + +GI PD  VYNSL++  C        +G    AL++  E      E G  CHP
Sbjct: 350 LFNEAQAKGIKPDIVVYNSLVKGLCL-------QGLILHALQVMNEM----AEEG--CHP 396

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           D+ +Y  +IN LCK   +  A  +  D   +G +PDV  +++LIDGYC   ++D A +L 
Sbjct: 397 DIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLV 456

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397
             +   G  PDT +YN+++N   K  KV E    + EMI  G  P+              
Sbjct: 457 ERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNP------------- 503

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                      +N L++  C+S ++  A ++  K+ + G  P+ V++  +I G C  G +
Sbjct: 504 ---------ITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDL 554

Query: 458 EKAYDLLPDMEEK 470
           E AY L   +EEK
Sbjct: 555 EGAYLLFQKLEEK 567



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 125/482 (25%), Positives = 211/482 (43%), Gaps = 74/482 (15%)

Query: 32  SENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFN 91
           S   P+++H   V+++             +++G   L DA+  F  M      P  P++N
Sbjct: 45  SRLSPATIHPLYVASIRAY----------ARAGR--LRDAVDAFERMDLFACPPAAPAYN 92

Query: 92  SLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRK 151
           +++ AL    Y+     +  R+   G+ PD  +  I +  FC     +   +AL R+LR 
Sbjct: 93  AIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCL---TARPHIAL-RLLRA 148

Query: 152 VFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF 211
           +     V    ++ GL   G   +A  LF + +      +V PN+  +  ++  LCK G 
Sbjct: 149 LPHRGAVAYCTVVCGLYAHGHTHDARQLFDQML----HTHVFPNLAAFNKVLHALCKRGD 204

Query: 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGEL 271
           V +  +L   +  RG+  + F YN  IR  C A       G    A+ L    V+G    
Sbjct: 205 VLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEA-------GRLPEAVRL----VDGMRAY 253

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
            V   PDV++Y ++I  LCK  +  +A      M ++G +PD   Y+++IDGYC +  + 
Sbjct: 254 AV---PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQ 310

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAA 391
           +A +L      +G +PD  +Y +LIN       VE AL L+ E  + G++P         
Sbjct: 311 EATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKP--------- 361

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
                        D+ V+N LV GLC    +  A ++  ++   G  P++ TY ++I GL
Sbjct: 362 -------------DIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGL 408

Query: 452 CIEGGIEKA------------------YDLLPDMEEKIRECLKAIELLHKMAKRYVKPDE 493
           C  G I  A                  ++ L D   K  +   A++L+ +M +  + PD 
Sbjct: 409 CKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDT 468

Query: 494 IT 495
           IT
Sbjct: 469 IT 470



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 111/477 (23%), Positives = 201/477 (42%), Gaps = 97/477 (20%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
            P + ++N+L+  L  K      +    R+   G LPD  + N +++ +CK+  V +A  
Sbjct: 255 VPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATE 314

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI---------- 193
            L   + K F PD VT   LI GLC +G    A  LF +  A   +P+++          
Sbjct: 315 LLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLC 374

Query: 194 ---------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
                                P++  Y  +I+GLCK G ++   V+  D   +G  PD F
Sbjct: 375 LQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVF 434

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALEL--------HEEFVNGNGELGVI---------- 274
            +N+LI  YC  +  + A        E         +   +NG  + G +          
Sbjct: 435 TFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEM 494

Query: 275 ----CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
               CHP+ ++Y  +I + C+   +++A ++ + M   G+ PD V +++LI G+C  G +
Sbjct: 495 ILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDL 554

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEA 390
           + A  LF  +E +G      ++NTLI ++S    +  A  ++ EM+S G R D+      
Sbjct: 555 EGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADS------ 608

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
                             +  L+DG CK+  +  A+    ++ + G  P++ T+  +I  
Sbjct: 609 ----------------YTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINS 652

Query: 451 LCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDE 507
           L +                      +A+ ++H M K  V P+     +++ +LN D+
Sbjct: 653 LTVN-----------------HRVFQAVGIIHIMVKIGVVPE-----VVDTILNADK 687



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 174/389 (44%), Gaps = 66/389 (16%)

Query: 44  VSTVEEKTKLLK-------------YLSE-NSKSGEVELNDALCFFNYMIHMQPTPFMPS 89
           +S V+E T+LLK             Y S  N    E ++  AL  FN        P +  
Sbjct: 306 ISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVV 365

Query: 90  FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149
           +NSL+  L  +   ++ + +   +   G  PD  + NI++N  CKM  +SDA V +   +
Sbjct: 366 YNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAI 425

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD 209
            K + PDV T   LI G C + K   A  L  +   +     + P+ I Y S+++GLCK 
Sbjct: 426 MKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEY----GIAPDTITYNSVLNGLCKA 481

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
           G VN+V   F +M  +G +P+   YN LI  +C +   E+A   +   +++ +E +    
Sbjct: 482 GKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEA---SKVIVKMSQEGL---- 534

Query: 270 ELGVICHPDVLSYCSIINSLCKD-------VLVDK------------------------- 297
                 HPD +S+ ++I   C++       +L  K                         
Sbjct: 535 ------HPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLN 588

Query: 298 ---AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
              A+++F +M S+G   D   Y  LIDG C    +D A    V +  +G IP  S++  
Sbjct: 589 MHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGR 648

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPD 383
           +INS +   +V +A+ +   M+ +GV P+
Sbjct: 649 VINSLTVNHRVFQAVGIIHIMVKIGVVPE 677



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 108/290 (37%), Gaps = 65/290 (22%)

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV--VYSSLIDGYCLMGRIDDARKL 336
           V +YC++I  L     VD         +SR + P  +  +Y + I  Y   GR+ DA   
Sbjct: 17  VPAYCALIRPLASAGRVDAVDAAVASARSR-LSPATIHPLYVASIRAYARAGRLRDAVDA 75

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------- 383
           F  ++   C P   +YN ++++       ++A  +Y  M++ GV PD             
Sbjct: 76  FERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCL 135

Query: 384 -------------------------------NSCILEAAELFRTLHNTKFELDLTVFNCL 412
                                          +    +A +LF  + +T    +L  FN +
Sbjct: 136 TARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKV 195

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIR 472
           +  LCK   +  A  L  K+ + G   N+ TY + I GLC  G + +A  L+  M     
Sbjct: 196 LHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGM----- 250

Query: 473 ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
                        + Y  PD +T + L   L K     E M+ L   +++
Sbjct: 251 -------------RAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQ 287


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 140/505 (27%), Positives = 224/505 (44%), Gaps = 53/505 (10%)

Query: 53  LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSER 112
           LL YL  N +  E        FF+ MI     P +  +  L+   A K        L   
Sbjct: 314 LLNYLCNNGRCREARF-----FFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNL 368

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +   GL PD    NI+   + K   + +A     ++ ++  SPDVV  G LI  LC  G+
Sbjct: 369 MVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGR 428

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
             +A   F + +       V PN+  + S++ GLC      K +  + +M  +GI PD  
Sbjct: 429 VDDAVLKFNQMM----NEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVV 484

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            +N+++   C        KG    A  L +          V   PDV+SY ++I   C  
Sbjct: 485 FFNTILCNLC-------TKGQVMKAQRLIDLMER------VGTRPDVISYTTLIGGHCLV 531

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             +D+A +    M S G+ PD   Y++L+ GYC  GRIDDA  +F  +   G  P   +Y
Sbjct: 532 GRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTY 591

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHN 399
           +T+++      +  EA  LY  MI+ G + +             N+C+ EA +LF++L +
Sbjct: 592 STILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCS 651

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
             F+L++T FN ++  L KS R   A  LF  +  YG  P+V TY ++   L  EG +E+
Sbjct: 652 KDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEE 711

Query: 460 AYDLLPDMEEK------------IRECL------KAIELLHKMAKRYVKPDEITVSILEE 501
             DL   ME+             +R  L      +A   L K+ ++    +  T ++L  
Sbjct: 712 FDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDITRAGAYLSKLDEKNFSLEASTTAMLIS 771

Query: 502 LLNKDENCHECMNLLPSFLSRNQEE 526
           LL++DE  H   +L   +   N+ +
Sbjct: 772 LLSRDEYHHHATSLPEKYRVLNEAK 796



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 143/562 (25%), Positives = 247/562 (43%), Gaps = 107/562 (19%)

Query: 41  SNSVSTVEEK-TKLLKYLSENSKSGEVELNDALCFFNYMI-HMQPTPFMPSFNSLLGALA 98
           S  VS V  +  +L + +   ++SG + L+DAL  F+ ++ H +P   + +FN LL A++
Sbjct: 2   SGRVSAVSNRCLELERVIGSRARSGSLGLDDALKLFDGLLTHARPASII-AFNHLLTAVS 60

Query: 99  ---GKKYYVN----FICLSERLN---TIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
              G++         + L  R+    TI + PD  + +IL+ CFC+M  +   F   G I
Sbjct: 61  RVSGRRSSTTESELVVSLFNRMIRECTIKVTPDLCTYSILIGCFCRMGRLEHGFATFGLI 120

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV-AFDCRPNVI-------------- 193
           L+  +  + + +  L++GLC   +  EA  +  K +    C P+V+              
Sbjct: 121 LKSGWRVNNIVINQLLKGLCDAKRLREAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKR 180

Query: 194 --------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233
                               PNV+ YA++I+G   +G V+K   LFL+M  RGI P+   
Sbjct: 181 AEEALELLHMMADSQGRSCPPNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVT 240

Query: 234 YNSLIRVYCCAVNWEDAKGNTSAAL--------ELHEEFVNGNGELG-----------VI 274
           Y ++I   C A   + A+G     +        + +   ++G   +G           + 
Sbjct: 241 YTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMS 300

Query: 275 CH---PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
            H   PD  +Y S++N LC +    +A+  F  M  +GI P+V +Y  LI GY   G + 
Sbjct: 301 AHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALS 360

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP--------- 382
           +   L   +   G  PD   +N +  +Y+K   ++EA+ ++ +M   G+ P         
Sbjct: 361 EMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALI 420

Query: 383 DNSCIL----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
           D  C L    +A   F  + N     ++ VFN LV GLC   +   A E + ++   G  
Sbjct: 421 DALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIR 480

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEE---------------------KIRECLKA 477
           P+VV +  ++C LC +G + KA  L+  ME                      +I E  K+
Sbjct: 481 PDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKS 540

Query: 478 IELLHKMAKRYVKPDEITVSIL 499
           ++++  +    +KPDE T + L
Sbjct: 541 LDVMLSVG---LKPDEWTYNTL 559



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 110/265 (41%), Gaps = 38/265 (14%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PD+ +Y  +I   C+   ++     F  +   G   + +V + L+ G C   R+ +A  +
Sbjct: 92  PDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLREAMDI 151

Query: 337 FVSIESE-GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395
            +    E GC PD  SYNTL+  +   ++ EEAL L   M     R   SC         
Sbjct: 152 LIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGR---SC--------- 199

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
                    ++  +  +++G     ++  A+ LF ++   G +PNVVTYT +I GLC   
Sbjct: 200 -------PPNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQ 252

Query: 456 GIEKAYDLLPDMEEK------------------IRECLKAIELLHKMAKRYVKPDEITVS 497
            +++A  +   M +K                  I +  + + +L +M+   +KPD  T  
Sbjct: 253 VVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYG 312

Query: 498 ILEELLNKDENCHECMNLLPSFLSR 522
            L   L  +  C E      S + +
Sbjct: 313 SLLNYLCNNGRCREARFFFDSMIRK 337


>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
 gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
          Length = 755

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 138/546 (25%), Positives = 238/546 (43%), Gaps = 117/546 (21%)

Query: 41  SNSVSTVEEK-TKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLL----- 94
           S  VS   ++  +L + ++  ++SG + L++AL  F+ ++H      + +FN LL     
Sbjct: 2   SRRVSAAADRCLELERVIASRARSGSLGLDEALKLFDELLHCARPASVRAFNQLLTVVSR 61

Query: 95  -GALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVF 153
            G  +  +  V+      R  +  + P+  + +IL+ CFC+M  +   F A G IL+  +
Sbjct: 62  AGCSSASERVVSLFTRMARECSSKVAPNACTYSILIGCFCRMGRLEHGFAAFGLILKTGW 121

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASG-LFTKFVAFDCRPNVI------------------- 193
             +V+ +  L++GLC   +  EA+  L  +   F C P+V+                   
Sbjct: 122 RVNVIVISQLLKGLCDAKRVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAY 181

Query: 194 ------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
                       PNV+ Y ++IDGLCK   V++ + +F  M  RG+ PD   YN LI  Y
Sbjct: 182 NLFLEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGY 241

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
                W++        +++ EE      E      PD ++Y  +++ LCK+    +A+  
Sbjct: 242 LSTGKWKE-------VVQMLEEMSTHGLE------PDCITYALLLDYLCKNGRCREARLF 288

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGR-------------------------------- 329
           F  M  +GI PDV +Y+ L+ GY   G                                 
Sbjct: 289 FDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAK 348

Query: 330 ---IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--- 383
              I++A  +F  +  +G  PD  S+  LI++  K+ +V++A+  + +MI+ GV P+   
Sbjct: 349 KAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFV 408

Query: 384 ------NSCIL----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
                   C +    +A ELF  + +    +D   FN L+  LC   R+  A  L   + 
Sbjct: 409 FSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMI 468

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDE 493
           R G  PNV++Y  ++ G C+ G I+                 +A +LL  M    +KP+E
Sbjct: 469 RVGVRPNVISYNTLVAGHCLTGRID-----------------EAAKLLDVMVSNGLKPNE 511

Query: 494 ITVSIL 499
            T +IL
Sbjct: 512 FTYTIL 517



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 117/437 (26%), Positives = 200/437 (45%), Gaps = 57/437 (13%)

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           F  MI     P   ++N L+        +   + + E ++T GL PD ++  +L++  CK
Sbjct: 219 FQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCK 278

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN--- 191
                +A +    + RK   PDV     L+ G   +G  +E        V     PN   
Sbjct: 279 NGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRI 338

Query: 192 ----------------------------VIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
                                       + P+V+ + ++ID LCK G V+   + F  M 
Sbjct: 339 FNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMI 398

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
             G+ P+ FV++SL+   C    WE A+       EL  E ++       IC  D + + 
Sbjct: 399 NEGVTPNIFVFSSLVYGLCTVGKWEKAE-------ELFFEVLDQG-----IC-VDAVFFN 445

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
           +++ +LC +  V +A+ L   M   G+ P+V+ Y++L+ G+CL GRID+A KL   + S 
Sbjct: 446 TLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSN 505

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP-------------DNSCILEA 390
           G  P+  +Y  L+  Y K  +V++A SL+ EM+  GV P                   EA
Sbjct: 506 GLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEA 565

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
            EL+  + N++ + D+  +N +++GLCK+  +  A+++F++L    P+ + VT+ +MI  
Sbjct: 566 NELYLNMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGA 625

Query: 451 LCIEGGIEKAYDLLPDM 467
           L   G  E A DL   +
Sbjct: 626 LLKGGRKEDAMDLFATI 642



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 183/402 (45%), Gaps = 39/402 (9%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L++   F + M+    +P    FN +  A A K      + +  ++   GL PD VS   
Sbjct: 317 LSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGA 376

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++  CK+  V DA +   +++ +  +P++     L+ GLC  GK+ +A  LF  F   D
Sbjct: 377 LIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELF--FEVLD 434

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               +  + + + +++  LC +G V + + L   M   G+ P+   YN+L+  +C     
Sbjct: 435 --QGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLT--- 489

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               G    A +L +  V+ NG       P+  +Y  ++   CK   VD A  LF +M  
Sbjct: 490 ----GRIDEAAKLLDVMVS-NG-----LKPNEFTYTILLRGYCKARRVDDAYSLFREMLM 539

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           +G+ P V  Y++++ G    GR  +A +L++++ +     D  +YN ++N   K      
Sbjct: 540 KGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSRTKCDIYTYNIILNGLCK------ 593

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
                           N+ + EA ++FR L +   +LD   FN ++  L K  R   A +
Sbjct: 594 ----------------NNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRKEDAMD 637

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           LF  +  YG  P+VVTY ++   L  EG + +   L   ME+
Sbjct: 638 LFATISAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEK 679



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 157/345 (45%), Gaps = 53/345 (15%)

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           LFT+ +A +C   V PN   Y+ +I   C+ G +      F  +   G   +  V + L+
Sbjct: 74  LFTR-MARECSSKVAPNACTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLL 132

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
           +  C A   ++A   T   L    EF          C PDV++Y ++IN   ++  V+KA
Sbjct: 133 KGLCDAKRVDEA---TDILLLRMSEFG---------CPPDVVAYNTVINGFFREGQVEKA 180

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
             LFL+M  +GI P+VV Y+++IDG C    +D A+ +F  +   G  PD  +YN LI+ 
Sbjct: 181 YNLFLEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHG 240

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
           Y    K +E + +  EM + G+ PD  CI                     +  L+D LCK
Sbjct: 241 YLSTGKWKEVVQMLEEMSTHGLEPD--CI--------------------TYALLLDYLCK 278

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM-------EEKI 471
           + R R A   F  + R G +P+V  Y +++ G   +G + + +  L  M         +I
Sbjct: 279 NGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRI 338

Query: 472 RECL-----------KAIELLHKMAKRYVKPDEITVSILEELLNK 505
              +           +A+ + +KM ++ + PD ++   L + L K
Sbjct: 339 FNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCK 383



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 97/236 (41%), Gaps = 41/236 (17%)

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           S  + P+   YS LI  +C MGR++     F  I   G   +    + L+      ++V+
Sbjct: 83  SSKVAPNACTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVD 142

Query: 367 EALS-LYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
           EA   L   M   G  PD                      +  +N +++G  +  ++  A
Sbjct: 143 EATDILLLRMSEFGCPPD----------------------VVAYNTVINGFFREGQVEKA 180

Query: 426 WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-------IRECL--- 475
           + LF ++   G  PNVVTYT +I GLC    +++A  +   M ++          CL   
Sbjct: 181 YNLFLEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHG 240

Query: 476 --------KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
                   + +++L +M+   ++PD IT ++L + L K+  C E      S   + 
Sbjct: 241 YLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKG 296


>gi|42562903|ref|NP_176512.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|114050643|gb|ABI49471.1| At1g63230 [Arabidopsis thaliana]
 gi|332195952|gb|AEE34073.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 323

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 178/353 (50%), Gaps = 43/353 (12%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  PD V+   LMN  C    V  A   + R++ +   P     G +I GLC  G    A
Sbjct: 5   GCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGDTESA 60

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L +K        ++  +V+ Y +IID LCKDG     + LF +M  +GI+PD   Y+ 
Sbjct: 61  LNLLSKME----ETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSG 116

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           +I  +C +  W DA+       ++ E  +N          PDV+++ ++IN+L K+  V 
Sbjct: 117 MIDSFCRSGRWTDAE---QLLRDMIERQIN----------PDVVTFSALINALVKEGKVS 163

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A+E++ DM  RGI P  + Y+S+IDG+C   R++DA+++  S+ S+ C PD  +++TLI
Sbjct: 164 EAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLI 223

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           N Y K ++V+  + ++ EM   G+                + NT        +  L+ G 
Sbjct: 224 NGYCKAKRVDNGMEIFCEMHRRGI----------------VANT------VTYTTLIHGF 261

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           C+   L +A +L   +   G  PN +T+  M+  LC +  + KA+ +L D+++
Sbjct: 262 CQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSKKELRKAFAILEDLQK 314



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 152/344 (44%), Gaps = 62/344 (18%)

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
            V   CRP+V+     + ++++GLC +G V +   L   M   G  P   + N L ++  
Sbjct: 1   MVETGCRPDVVT----FTTLMNGLCCEGRVLQALALVDRMVEEGHQPYGTIINGLCKM-- 54

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
                    G+T +AL L    ++   E  +  H  V+ Y +II+ LCKD     A+ LF
Sbjct: 55  ---------GDTESALNL----LSKMEETHIKAH--VVIYNAIIDRLCKDGHHIHAQNLF 99

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
            +M  +GI PDV+ YS +ID +C  GR  DA +L   +      PD  +++ LIN+  K 
Sbjct: 100 TEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKE 159

Query: 363 EKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRL 422
            KV EA  +YG+M+  G+ P                          +N ++DG CK  RL
Sbjct: 160 GKVSEAEEIYGDMLRRGIFPTT----------------------ITYNSMIDGFCKQDRL 197

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK------------ 470
             A  +   +      P+VVT++ +I G C    ++   ++  +M  +            
Sbjct: 198 NDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTL 257

Query: 471 ------IRECLKAIELLHKMAKRYVKPDEITV-SILEELLNKDE 507
                 + +   A +LL+ M    V P+ IT  S+L  L +K E
Sbjct: 258 IHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSKKE 301



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 135/312 (43%), Gaps = 55/312 (17%)

Query: 63  SGEVELNDALCFFNYMIHMQPTPFMPS---FNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           +G  ++ D     N +  M+ T        +N+++  L    ++++   L   ++  G+ 
Sbjct: 49  NGLCKMGDTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIF 108

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD ++ + +++ FC+    +DA   L  ++ +  +PDVVT   LI  L  +GK +EA  +
Sbjct: 109 PDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEI 168

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           +   +    R  + P  I Y S+IDG CK   +N  + +   M  +   PD   +++LI 
Sbjct: 169 YGDML----RRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLIN 224

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            YC                                                K   VD   
Sbjct: 225 GYC------------------------------------------------KAKRVDNGM 236

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           E+F +M  RGI+ + V Y++LI G+C +G +D A+ L   + S G  P+  ++ +++ S 
Sbjct: 237 EIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASL 296

Query: 360 SKIEKVEEALSL 371
              +++ +A ++
Sbjct: 297 CSKKELRKAFAI 308


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 175/364 (48%), Gaps = 33/364 (9%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PDF++   L++   K   + DA   L  ++     PD  TL  +++ LC+  +  +A  L
Sbjct: 37  PDFLTYTKLVHGLSKARRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDAREL 96

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             + +       +  N I Y++++DGLCK   +++   L   M  RG  P    YNS+I 
Sbjct: 97  VEEML----HRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIIT 152

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            +C A   ++A G         E+ V         CHPD+++Y ++I   CK   V +  
Sbjct: 153 GFCRARRVDEAHG-------FMEQMVAEG------CHPDIITYTALIGGFCKSRDVGRGL 199

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           EL  ++  RG  PD+V YS++IDG C  GR+ DA  +F   E   C P   +YN+LI  Y
Sbjct: 200 ELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIF---EEMSCAPTAITYNSLIGGY 256

Query: 360 SKIEKVEEALSLYGEMISMGVRPD---------NSCIL----EAAELFRTLHNTKFELDL 406
            +   ++EA+ L G+M+     PD           C +    +A ELF+ +   K   D+
Sbjct: 257 CRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDV 316

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             F  LVDGLC   R+  A EL +++ R G  P + TY  ++ G C    + KA +L+ D
Sbjct: 317 VTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVAD 376

Query: 467 MEEK 470
              +
Sbjct: 377 FRSR 380



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 197/420 (46%), Gaps = 43/420 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            ++DA      M+H        ++++L+  L   +     + L E +   G  P  V+ N
Sbjct: 89  RVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYN 148

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ---GKFTEASGLFTKF 183
            ++  FC+   V +A   + +++ +   PD++T   LI G C     G+  E  G  T  
Sbjct: 149 SIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVT-- 206

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
                R    P+++ Y+++IDGLCK G +     +F +M      P A  YNSLI  YC 
Sbjct: 207 -----RRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS---CAPTAITYNSLIGGYCR 258

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
           A       G+   A+ L  + V+        C PDV++Y +++++ CK   +D A ELF 
Sbjct: 259 A-------GDMDEAIRLLGKMVDDK------CAPDVVTYTTLMSAFCKMGRLDDAYELFQ 305

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            M +  + PDVV ++SL+DG C  GR++DA +L   I   GC P   +YN +++ Y K  
Sbjct: 306 QMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKAN 365

Query: 364 KVEEALSLYGEMISMGVRPD----NSCILEAAELFRTLHNTKFELD------------LT 407
           +V +A  L  +  S G  P+    N  +       RT    ++ LD            + 
Sbjct: 366 QVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQY-LDQLNSEGGPCPTSVA 424

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           ++  ++D LC+  R   A + ++++ + G  P   T+  ++  LC     ++A++LL +M
Sbjct: 425 MYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEM 484



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/435 (25%), Positives = 183/435 (42%), Gaps = 71/435 (16%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            L++A+     M      P + ++NS++      +         E++   G  PD ++  
Sbjct: 124 RLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYT 183

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+  FCK   V      LG + R+ F+PD+VT   +I GLC  G+  +A  +F +    
Sbjct: 184 ALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM--- 240

Query: 187 DCRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKV 215
            C P  I                               P+V+ Y +++   CK G ++  
Sbjct: 241 SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDA 300

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
             LF  M    + PD   + SL+   C     EDA       LEL EE           C
Sbjct: 301 YELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDA-------LELLEEITRRG------C 347

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
            P + +Y  +++  CK   V KA+EL  D +SRG +P+ V Y+ L+ G C  GR D A +
Sbjct: 348 PPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQ 407

Query: 336 LFVSIESEG--CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAEL 393
               + SEG  C    + Y  ++++  +  + ++A+  Y EMI  G  P       AA  
Sbjct: 408 YLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVP-------AAAT 460

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
           F T+          VF      LCK+ + + A EL +++ +YG  P   T   ++   C 
Sbjct: 461 FATV----------VF-----ALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCR 505

Query: 454 EGGIEKAYDLLPDME 468
            G I+KA +L  ++ 
Sbjct: 506 AGMIQKADELASELR 520



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 157/362 (43%), Gaps = 50/362 (13%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P  + +  +I GLC+ G +     ++  M      PD   Y  L+     A    DA   
Sbjct: 3   PGTLLHNVVIGGLCRAGRLRHALGVYRQMND-AHPPDFLTYTKLVHGLSKARRLRDA--- 58

Query: 254 TSAALELHEEFVNGNGELGVICH-PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
               +++ +E V+         H PD  +   ++ SLC    VD A+EL  +M  RG+  
Sbjct: 59  ----VQVLQEMVSAR-------HVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAA 107

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
           + + YS+L+DG C   R+D+A  L  ++   GC P   +YN++I  + +  +V+EA    
Sbjct: 108 NAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFM 167

Query: 373 GEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            +M++ G  PD             +  +    EL   +    F  D+  ++ ++DGLCK+
Sbjct: 168 EQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKA 227

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE---------- 469
            RLR A ++F+++      P  +TY  +I G C  G +++A  LL  M +          
Sbjct: 228 GRLRDAVDIFEEMS---CAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTY 284

Query: 470 --------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
                   K+     A EL  +M    + PD +T + L + L  +    + + LL     
Sbjct: 285 TTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITR 344

Query: 522 RN 523
           R 
Sbjct: 345 RG 346


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 115/426 (26%), Positives = 195/426 (45%), Gaps = 74/426 (17%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD  + N L+N FCKM  + DA   L R+  K FSPD VT   +I  LC +GK   A  +
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 215

Query: 180 FTKFVAFDCRPNVI-------------------------------PNVICYASIIDGLCK 208
             + ++ +C+P VI                               P++  Y +II G+CK
Sbjct: 216 LNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCK 275

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           +G V++   +  +++ +G  PD   YN L+R       WE+ +   +             
Sbjct: 276 EGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEK------- 328

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                 C P+V++Y  +I +LC+D  +++A  L   MK +G+ PD   Y  LI  +C  G
Sbjct: 329 ------CDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREG 382

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---- 384
           R+D A +   ++ S+GC+PD  +YNT++ +  K  K ++AL ++G++  +G  P++    
Sbjct: 383 RLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYN 442

Query: 385 ---SCILEAAELFRTLH------NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
              S +  + +  R LH      +   + D   +N ++  LC+   +  A+EL   +   
Sbjct: 443 TMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSC 502

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEIT 495
              P+VVTY +++ G C    IE                  AI +L  M     +P+E T
Sbjct: 503 EFHPSVVTYNIVLLGFCKAHRIE-----------------DAINVLESMVGNGCRPNETT 545

Query: 496 VSILEE 501
            ++L E
Sbjct: 546 YTVLIE 551



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/415 (23%), Positives = 180/415 (43%), Gaps = 49/415 (11%)

Query: 133 CKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNV 192
           C+     ++   L  ++RK ++PDV+    LI+G        +A  +      F      
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQ---- 155

Query: 193 IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252
            P+V  Y ++I+G CK   ++    +   M+ +   PD   YN +I   C       ++G
Sbjct: 156 -PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLC-------SRG 207

Query: 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
               AL++  + ++ N      C P V++Y  +I +   +  VD+A +L  +M SRG+ P
Sbjct: 208 KLDLALKVLNQLLSDN------CQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKP 261

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
           D+  Y+++I G C  G +D A ++  ++E +GC PD  SYN L+ +     K EE   L 
Sbjct: 262 DMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLM 321

Query: 373 GEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            +M S    P+             +  I EA  L + +       D   ++ L+   C+ 
Sbjct: 322 TKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCRE 381

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE---------- 469
            RL  A E  + +   G  P++V Y  ++  LC  G  ++A ++   + E          
Sbjct: 382 GRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSY 441

Query: 470 --------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                      + ++A+ ++ +M    + PDEIT + +   L ++    E   LL
Sbjct: 442 NTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELL 496



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 151/316 (47%), Gaps = 25/316 (7%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + S+N LL AL  +  +     L  ++ +    P+ V+ +IL+   C+   + +A   
Sbjct: 296 PDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNL 355

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           L  +  K  +PD  +   LI   C +G+   A       ++  C    +P+++ Y +++ 
Sbjct: 356 LKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGC----LPDIVNYNTVLA 411

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
            LCK+G  ++   +F  +   G  P++  YN++         W  + G+   AL +  E 
Sbjct: 412 TLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSAL-----W--SSGDKIRALHMILEM 464

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           ++ NG       PD ++Y S+I+ LC++ +VD+A EL +DM+S    P VV Y+ ++ G+
Sbjct: 465 MS-NG-----IDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGF 518

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           C   RI+DA  +  S+   GC P+ ++Y  LI          EA+ L  +++ +    + 
Sbjct: 519 CKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRIDAISEY 578

Query: 385 SCILEAAELFRTLHNT 400
           S        F+ LH T
Sbjct: 579 S--------FKRLHRT 586



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 117/279 (41%), Gaps = 64/279 (22%)

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS-------------------------- 318
           I +  C+     ++  L   M  +G  PDV++ +                          
Sbjct: 95  IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG 154

Query: 319 --------SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
                   +LI+G+C M RIDDA ++   + S+   PDT +YN +I S     K++ AL 
Sbjct: 155 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALK 214

Query: 371 LYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
           +  +++S   +P                 + EA +L   + +   + D+  +N ++ G+C
Sbjct: 215 VLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMC 274

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKA 477
           K   +  A+E+ + L   G EP+V++Y +++  L  +G  E+         EK       
Sbjct: 275 KEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEG--------EK------- 319

Query: 478 IELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
             L+ KM      P+ +T SIL   L +D    E MNLL
Sbjct: 320 --LMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLL 356



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 9/159 (5%)

Query: 53  LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSER 112
           +L  L +N K+     + AL  F  +  +  +P   S+N++  AL      +  + +   
Sbjct: 409 VLATLCKNGKA-----DQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILE 463

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           + + G+ PD ++ N +++C C+   V +AF  L  +    F P VVT   ++ G C   +
Sbjct: 464 MMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHR 523

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF 211
             +A  +    V   CR    PN   Y  +I+G+   G+
Sbjct: 524 IEDAINVLESMVGNGCR----PNETTYTVLIEGIGFAGY 558


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/404 (29%), Positives = 191/404 (47%), Gaps = 30/404 (7%)

Query: 91  NSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILR 150
           ++L+  L G+    N + + + +     +PD V+  IL+   CK  G   A   L  +  
Sbjct: 164 DTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRD 223

Query: 151 KVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDG 210
           K  +PD+VT   ++ G+C +G+  +A        ++ C PN +     Y  ++ GLC   
Sbjct: 224 KGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVS----YNIVLKGLCTAE 279

Query: 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGE 270
                  L  +M  +G  P+   +N LI   C        KG    ALE+ E+       
Sbjct: 280 RWEDAEELMGEMGQKGCPPNVVTFNMLISFLC-------RKGLVEPALEVLEQIPKYG-- 330

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
               C P+ LSY  ++++ CK   +DKA      M SRG  PD+V Y++L+   C  G +
Sbjct: 331 ----CSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEV 386

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------- 383
           D A +L   ++ +GC P   SYNT+I+  +K  K +EAL L  EM+S G++PD       
Sbjct: 387 DVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTI 446

Query: 384 ------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
                    I +A   F  + +     +  ++N ++ GLCK     SA +LF  +   G 
Sbjct: 447 AAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGC 506

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELL 481
            PN  TYT++I GL  EG I++A DLL ++  +  E L  + L+
Sbjct: 507 MPNESTYTILIEGLAYEGLIKEARDLLDELCSRGEEILLDVHLI 550



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 105/402 (26%), Positives = 182/402 (45%), Gaps = 65/402 (16%)

Query: 147 RILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGL 206
           R++     PD  T   LI+ L   G+  EA     + V   C P+V+     Y +++ G 
Sbjct: 88  RLVGSARRPDAGTCAALIKKLSASGRTAEA-----RRVLAACGPDVMA----YNAMMAGY 138

Query: 207 CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266
           C  G V+  R    +   R +  DA+  ++LIR  C        +G T+ AL + +E + 
Sbjct: 139 CGAGQVDAARRWCAE---RAVERDAYTCDTLIRGLC-------GRGRTANALAVLDEMLR 188

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
                   C PDV++Y  ++ + CK     +A +L  +M+ +G  PD+V Y+ +++G C 
Sbjct: 189 RR------CVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQ 242

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC 386
            GR+DDA +   ++ S GC P+T SYN ++      E+ E+A  L GEM   G  P    
Sbjct: 243 EGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPP---- 298

Query: 387 ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTV 446
                             ++  FN L+  LC+   +  A E+ +++P+YG  PN ++Y  
Sbjct: 299 ------------------NVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNP 340

Query: 447 MICGLCIEGGIEKAYDLL---------PDMEE---------KIRECLKAIELLHKMAKRY 488
           ++   C +  ++KA   L         PD+           +  E   A+ELLH++  + 
Sbjct: 341 LLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKG 400

Query: 489 VKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
             P  I+ + + + L K     E + LL   +S+  +   +T
Sbjct: 401 CAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIIT 442



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 144/320 (45%), Gaps = 17/320 (5%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N    E  ++DA+ F   +      P   S+N +L  L   + + +   L   +   G  
Sbjct: 238 NGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCP 297

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ V+ N+L++  C+   V  A   L +I +   SP+ ++   L+   C Q K  +A   
Sbjct: 298 PNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAF 357

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
               V+  C     P+++ Y +++  LC+ G V+    L   +K +G  P    YN++I 
Sbjct: 358 LDLMVSRGC----YPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVI- 412

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
                 +     G T  ALEL  E V+          PD+++Y +I   LC++  ++ A 
Sbjct: 413 ------DGLTKAGKTKEALELLNEMVSKG------LQPDIITYSTIAAGLCREDRIEDAI 460

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
             F  ++  GI P+ V+Y+++I G C       A  LF  +   GC+P+ S+Y  LI   
Sbjct: 461 RAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGL 520

Query: 360 SKIEKVEEALSLYGEMISMG 379
           +    ++EA  L  E+ S G
Sbjct: 521 AYEGLIKEARDLLDELCSRG 540


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 129/464 (27%), Positives = 216/464 (46%), Gaps = 49/464 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           + +DA+  F  M    P P   ++N+++  L+      + I L E +   G  P+  S N
Sbjct: 211 QCSDAVLHFREMSKTCP-PDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYN 269

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            +++ FCK   V +A   L +++ +   PDVV+   +I GLC   +  EA  +  K +  
Sbjct: 270 TVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQR 329

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C+PNVI     Y +++DG C+ G ++    L   M  RG  P+A  YN+++ V+C    
Sbjct: 330 GCQPNVIT----YGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFC---- 381

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
               + +   A ++ +  +         C PD ++Y +II+  CK   + +A +L   M 
Sbjct: 382 ---RRNDMERAHQVLQMMIQTG------CPPDAINYSTIISGFCKAGKLREAHDLLEQMI 432

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            RG  PDV   S+LID  C    ID A++L        C PD  +Y+ LI++  K +++ 
Sbjct: 433 RRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLP 492

Query: 367 EALSLYGEMISMGVRPD----NSC---------ILEAAELFRTLHNTKFELDLTVFNCLV 413
           EA S    M+     PD    NS          I +A  LF  +       D+  ++ ++
Sbjct: 493 EAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVI 552

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE---- 469
              CK   L SA+++ +++      P+VVTY+ +I GLC  G ++KA+D+  +M      
Sbjct: 553 HSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCA 612

Query: 470 --------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                         KI +  +A E+L  M K+   PD IT + L
Sbjct: 613 PNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCL 656



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 136/502 (27%), Positives = 216/502 (43%), Gaps = 92/502 (18%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N  S    L+DA+     M+     P + S+N++L          N + L E++ T G  
Sbjct: 238 NGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCP 297

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD VS   ++N  CK+  V +A   + +++++   P+V+T G L+ G C  G    A  L
Sbjct: 298 PDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVEL 357

Query: 180 FTKFVAFDCRPNVI-------------------------------PNVICYASIIDGLCK 208
             K      RPN I                               P+ I Y++II G CK
Sbjct: 358 VRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCK 417

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK-------GNTSA----- 256
            G + +   L   M  RG  PD    ++LI   C A   + A+       G   A     
Sbjct: 418 AGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVA 477

Query: 257 ------ALELHEEFVNGNGELGVI----CHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                 AL   +        L V+    C+PDV++Y S+++ LCK   ++ A  LF  M+
Sbjct: 478 YSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMR 537

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           + G++PDVV YS +I  +C    +D A K+   ++   C+PD  +Y+ LIN   K   V+
Sbjct: 538 AAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVD 597

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           +A  ++ EM+  G  P                      +L  +N L+DGLCK  ++  A 
Sbjct: 598 KAFDVFQEMLGCGCAP----------------------NLVTYNTLIDGLCKINKVEQAA 635

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAK 486
           E+ + + +    P+ +TYT +I GLC    +E+A+ +L +M++K   CL           
Sbjct: 636 EMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDK--GCL----------- 682

Query: 487 RYVKPDEITVSILEELLNKDEN 508
               PD +T   L   L K  N
Sbjct: 683 ----PDRMTYGTLLRALQKTNN 700



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 121/420 (28%), Positives = 203/420 (48%), Gaps = 33/420 (7%)

Query: 62   KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
            KSG+V+  DA      M+    +P + +++SLL  L           L +R+   G  P+
Sbjct: 960  KSGKVD--DACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPN 1017

Query: 122  FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             V+ N +++  CK+  + +A+  L  ++     P+VVT   L+   C  GK  +A GL  
Sbjct: 1018 IVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVE 1077

Query: 182  KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
              V        +PN+  Y S++D  CK   V +   L   M  +G  P+   YN++I   
Sbjct: 1078 VMV----EKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGL 1133

Query: 242  CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
            C A    +        + L E+ ++ N      C PD++++ +II+++CK   VD A EL
Sbjct: 1134 CKATKVHE-------GVLLLEQMLSNN------CVPDIVTFNTIIDAMCKTYRVDIAYEL 1180

Query: 302  FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI-ESEGCIPDTSSYNTLINSYS 360
            F  ++  G  P++V Y+SL+ G C   R D A  L   +   +GC PD  +YNT+I+   
Sbjct: 1181 FNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLC 1240

Query: 361  KIEKVEEALSLYGEMISMGVRPDN---SCIL----------EAAELFRTLHNTKFELDLT 407
            K ++V+ A  L+ +M+S G+ PD+   S ++          EA  +   +    F+    
Sbjct: 1241 KSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAI 1300

Query: 408  VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
             +  L+DG CK+  L  A E+ + L   G  P+VVT+++ I  L   G + +A +LL  M
Sbjct: 1301 TYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETM 1360



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 123/433 (28%), Positives = 205/433 (47%), Gaps = 49/433 (11%)

Query: 120  PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
            PD  + + +++   K   V DA   +  ++ K  SP+VVT   L+ GLC  GK  EA+ L
Sbjct: 946  PDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATAL 1005

Query: 180  FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
              +     C PN++     Y +IIDG CK G +++   L  +M   G  P+   Y  L+ 
Sbjct: 1006 LQRMTRSGCSPNIVT----YNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLD 1061

Query: 240  VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             +C     EDA G       L E  V    E G +  P++ +Y S+++  CK   V++A 
Sbjct: 1062 AFCKCGKAEDAIG-------LVEVMV----EKGYV--PNLFTYNSLLDMFCKKDEVERAC 1108

Query: 300  ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            +L   M  +G +P+VV Y+++I G C   ++ +   L   + S  C+PD  ++NT+I++ 
Sbjct: 1109 QLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAM 1168

Query: 360  SKIEKVEEALSLYGEMISMGVRPD----NSCIL---------EAAELFRTLHNTKF-ELD 405
             K  +V+ A  L+  +   G  P+    NS +          +A  L R +   +    D
Sbjct: 1169 CKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPD 1228

Query: 406  LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC------------- 452
            +  +N ++DGLCKS R+  A++LF ++   G  P+ VTY+++I  LC             
Sbjct: 1229 IITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLE 1288

Query: 453  --IEGGIEKA---YDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDE 507
              ++ G +     Y  L D   K     KA+E+L  +  +   PD +T SI  + L+K  
Sbjct: 1289 LMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRG 1348

Query: 508  NCHECMNLLPSFL 520
               +   LL + L
Sbjct: 1349 RLRQAGELLETML 1361



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 115/408 (28%), Positives = 188/408 (46%), Gaps = 42/408 (10%)

Query: 67   ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
             +++A      M+     P + ++  LL A        + I L E +   G +P+  + N
Sbjct: 1033 RIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYN 1092

Query: 127  ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
             L++ FCK   V  A   L  +++K   P+VV+   +I GLC   K  E   L  + ++ 
Sbjct: 1093 SLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSN 1152

Query: 187  DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            +C    +P+++ + +IID +CK   V+    LF  ++  G  P+   YNSL+   C +  
Sbjct: 1153 NC----VPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRR 1208

Query: 247  WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            ++ A+        L  E     G     C PD+++Y ++I+ LCK   VD+A +LFL M 
Sbjct: 1209 FDQAE-------YLLREMTRKQG-----CSPDIITYNTVIDGLCKSKRVDRAYKLFLQML 1256

Query: 307  SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            S G+ PD V YS +I   C    +D+A  +   +   G  P   +Y TLI+ + K   ++
Sbjct: 1257 SDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLD 1316

Query: 367  EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
            +AL +   ++S G  P                      D+  F+  +D L K  RLR A 
Sbjct: 1317 KALEILQLLLSKGSYP----------------------DVVTFSIFIDWLSKRGRLRQAG 1354

Query: 427  ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC 474
            EL + + R G  P+ VTY  ++ G C     E A DL     E +R+C
Sbjct: 1355 ELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLF----EVMRQC 1398



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 124/462 (26%), Positives = 205/462 (44%), Gaps = 57/462 (12%)

Query: 101  KYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTL 160
            + Y N +C S         P+  +  IL++  C+   +  A+  L  + R     +V+  
Sbjct: 865  QVYRNKLCCS---------PNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILH 915

Query: 161  GCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFL 220
              +I+GLC   K   A  LF +       P   P+V  Y++I+D L K G V+    L  
Sbjct: 916  NVVIKGLCSARKLDSALELFKEMEESGSCP---PDVFTYSTIVDSLVKSGKVDDACRLVE 972

Query: 221  DMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVL 280
            DM  +G  P+   Y+SL+   C A       G    A  L +            C P+++
Sbjct: 973  DMVSKGCSPNVVTYSSLLHGLCKA-------GKLDEATALLQRMTRSG------CSPNIV 1019

Query: 281  SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
            +Y +II+  CK   +D+A  L  +M   G  P+VV Y+ L+D +C  G+ +DA  L   +
Sbjct: 1020 TYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVM 1079

Query: 341  ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCIL-------- 388
              +G +P+  +YN+L++ + K ++VE A  L   MI  G  P+    N+ I         
Sbjct: 1080 VEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKV 1139

Query: 389  -EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
             E   L   + +     D+  FN ++D +CK++R+  A+ELF  +   G  PN+VTY  +
Sbjct: 1140 HEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSL 1199

Query: 448  ICGLCIEGGIEKAYDLLPDMEEKI-------------------RECLKAIELLHKMAKRY 488
            + GLC     ++A  LL +M  K                    +   +A +L  +M    
Sbjct: 1200 VHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDG 1259

Query: 489  VKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
            + PD++T SI+   L K     E  N+L   L    +   +T
Sbjct: 1260 LAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAIT 1301



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 164/348 (47%), Gaps = 35/348 (10%)

Query: 137  GVSDAFVALG----RILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNV 192
            GV +   ALG       ++ ++ D  T  CL++ L    +  +A  ++   +   C PN+
Sbjct: 820  GVRNGDAALGFFDWATSQEGYNHDTYTCNCLLQALLRLKRPKDALQVYRNKLC--CSPNM 877

Query: 193  IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252
                I    +I GLC+ G +     L  +M   G+  +  ++N +I+  C A   +    
Sbjct: 878  FTFTI----LIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLD---- 929

Query: 253  NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
               +ALEL +E           C PDV +Y +I++SL K   VD A  L  DM S+G  P
Sbjct: 930  ---SALELFKEMEESGS-----CPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSP 981

Query: 313  DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
            +VV YSSL+ G C  G++D+A  L   +   GC P+  +YNT+I+ + K+ +++EA  L 
Sbjct: 982  NVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLL 1041

Query: 373  GEMISMGVRP---------DNSCILEAAE----LFRTLHNTKFELDLTVFNCLVDGLCKS 419
             EM+  G +P         D  C    AE    L   +    +  +L  +N L+D  CK 
Sbjct: 1042 EEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKK 1101

Query: 420  WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
              +  A +L   + + G  PNVV+Y  +I GLC    + +   LL  M
Sbjct: 1102 DEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQM 1149



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 149/320 (46%), Gaps = 18/320 (5%)

Query: 67   ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            E+  A    + MI     P + S+N+++  L         + L E++ +   +PD V+ N
Sbjct: 1103 EVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFN 1162

Query: 127  ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
             +++  CK   V  A+     I     +P++VT   L+ GLC   +F +A  L  +    
Sbjct: 1163 TIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTR- 1221

Query: 187  DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
              +    P++I Y ++IDGLCK   V++   LFL M   G+ PD   Y+ +I   C    
Sbjct: 1222 --KQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLC---K 1276

Query: 247  WEDA-KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
            W    + N    L L   F            P  ++Y ++I+  CK   +DKA E+   +
Sbjct: 1277 WRFMDEANNVLELMLKNGF-----------DPGAITYGTLIDGFCKTGNLDKALEILQLL 1325

Query: 306  KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
             S+G  PDVV +S  ID     GR+  A +L  ++   G +PDT +YNTL+  +      
Sbjct: 1326 LSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLT 1385

Query: 366  EEALSLYGEMISMGVRPDNS 385
            E+A+ L+  M   G  PDN+
Sbjct: 1386 EDAVDLFEVMRQCGCEPDNA 1405



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 167/377 (44%), Gaps = 64/377 (16%)

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD 209
           R  +  ++    CL+  L    ++++A  LF   +          + + Y+++I G  + 
Sbjct: 119 RDGYQHEIFCCNCLLNVLVKAHQYSQAHDLFRSRI----EGQWGGDTVTYSTLISGFIRA 174

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
           G +     LF +M  +G+   A V+ S++R  C      DA   + A L   E       
Sbjct: 175 GKILPAYELFDEMNRKGLKAHAGVHKSILRGLC------DAGQCSDAVLHFRE------- 221

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
            +   C PD ++Y ++IN L K   +D A  L  +M   G  P+V  Y++++ G+C   R
Sbjct: 222 -MSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANR 280

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE 389
           +++A  L   + + GC PD  SY T+IN   K+++V+EA  +  +MI  G +P       
Sbjct: 281 VENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQP------- 333

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
                          ++  +  LVDG C+   L  A EL +K+   G  PN +TY  ++ 
Sbjct: 334 ---------------NVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMH 378

Query: 450 GLCIEGGIEKAYDLLPDMEE---------------------KIRECLKAIELLHKMAKRY 488
             C    +E+A+ +L  M +                     K+RE   A +LL +M +R 
Sbjct: 379 VFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLRE---AHDLLEQMIRRG 435

Query: 489 VKPDEITVSILEELLNK 505
            +PD   +S L + L K
Sbjct: 436 CRPDVACLSTLIDALCK 452



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 106/436 (24%), Positives = 189/436 (43%), Gaps = 57/436 (13%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            L +A  + + M+  +  P + ++NS++  L   +   +   L +R+   G++PD V+ +
Sbjct: 490 RLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYS 549

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           I+++ FCK   +  AF  L R+      PDVVT   LI GLC  G   +A  +F + +  
Sbjct: 550 IVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGC 609

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C PN++     Y ++IDGLCK   V +   +   M+ +   PD+  Y  LI   C A  
Sbjct: 610 GCAPNLVT----YNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASR 665

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            E+      A   L E    G       C PD ++Y +++ +L K   ++  ++L  +M+
Sbjct: 666 LEE------AWRVLREMKDKG-------CLPDRMTYGTLLRALQKTNNLELVEQLLKEME 712

Query: 307 S----RGIIPDVVVYSSLIDGYCL-------MGRIDDARKLFVSIESEGCI-PDTSSYNT 354
           +    +       ++  +I G  L       M  +    ++  S + +G   P    Y  
Sbjct: 713 ATEEGQWNANGARLHRFVIRGDVLMMAMAVPMAALTSQTRVLDSKDQQGQFSPRPHQYRV 772

Query: 355 ---------------LINSYSKIEKVEEALSLY-GEMIS-------MGVRPDNSCILEAA 391
                          ++NS    E  E AL  + G++ +        GVR  ++ +    
Sbjct: 773 TAVATQGGFHHKIVRILNSRFAWEYAETALERFTGKLTTTVVGKVLQGVRNGDAAL---G 829

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
                     +  D    NCL+  L +  R + A ++++   +    PN+ T+T++I GL
Sbjct: 830 FFDWATSQEGYNHDTYTCNCLLQALLRLKRPKDALQVYRN--KLCCSPNMFTFTILIHGL 887

Query: 452 CIEGGIEKAYDLLPDM 467
           C  G I  AY+LL +M
Sbjct: 888 CRAGDIGTAYELLKEM 903



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 126/317 (39%), Gaps = 48/317 (15%)

Query: 117  GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
            G  P  ++   L++ FCK   +  A   L  +L K   PDVVT    I  L  +G+  +A
Sbjct: 1294 GFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQA 1353

Query: 177  SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
              L    +    R  ++P+ + Y +++ G C          LF  M+  G  PD   Y +
Sbjct: 1354 GELLETML----RAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTT 1409

Query: 237  LIRVYCCAVNWED-----AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
            L+       +++D     +K       +L+ E ++   E  +    DV   C+I++   K
Sbjct: 1410 LVGHLVDKKSYKDLLAEVSKSMVDTGFKLNHE-LSSKLEASIEVEADVRLGCAIVDMFGK 1468

Query: 292  DVLVDKAKELFLDMKSR-------------------------------GIIPDVVVYSSL 320
                  A+++F  M  R                               G+ PD V + SL
Sbjct: 1469 CGSPQDARKVFEGMDQRNVVLWSAMLGVYVFHKQEEQAFGLWRVMGLEGVEPDAVTFLSL 1528

Query: 321  IDGYCLMGRIDDARKLFVSIESE-GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
            +   C  G +D A   FVSI  + G  P    ++ +I+   ++  V EA  L   M+ M 
Sbjct: 1529 LTMCCHAGLLDAAVDEFVSISRDYGLEPGVDHFSCVIDLLGRLGLVNEAEDL---MLGMP 1585

Query: 380  VRPDNS---CILEAAEL 393
             +P  +   C+L A ++
Sbjct: 1586 CKPSAATWNCLLSAYKI 1602


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 132/436 (30%), Positives = 201/436 (46%), Gaps = 81/436 (18%)

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           +++  CK   V  A     +++ K   PDVVT G LI GL  Q +  EA  LF +  A  
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 188 CRPNVI--------------------------------PNVICYASIIDGLCKDGFVNKV 215
           C P V+                                P V+ Y+++IDGLC+D  V+K 
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKG 120

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
             L  +M GRG  P+A  YN+L       VN    +G +  A  L E+    NG     C
Sbjct: 121 CKLLEEMAGRGCAPNAVTYNTL-------VNALLGQGRSKEAFSLLEQMA-ANG-----C 167

Query: 276 HPDVLSYCSIINSLCKDVLVDKA----KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
            P+++++  II  LCK+  ++ A     E+F  M   G+ PDV+ ++S++DG C   RI 
Sbjct: 168 PPELITFGLIIKGLCKEGEIEAAFRVVDEMF--MIESGLSPDVITFNSVLDGLCKEQRIL 225

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---SCIL 388
           DA  +F      GC P+  +Y+TLI+  SK+ K++EAL L  +M+ +G R +    S ++
Sbjct: 226 DAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVV 285

Query: 389 ----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
                     +A  + R + +     D   +N L+DG  K  RLR A  L +++   G  
Sbjct: 286 DGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFH 345

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSI 498
           P+VVTYT +  GLC  G  +                 +A+E+L  MA R   P+ IT S 
Sbjct: 346 PSVVTYTTLCHGLCRSGRFD-----------------EAVEILDYMAARGCAPNAITYSS 388

Query: 499 LEELLNKDENCHECMN 514
           + + L K     E + 
Sbjct: 389 IVDGLCKAGRVTEALG 404



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 106/349 (30%), Positives = 160/349 (45%), Gaps = 31/349 (8%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL PD ++ N +++  CK   + DA     R L +   P+VVT   LI GL    K  EA
Sbjct: 203 GLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEA 262

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L  K V   CR N +     Y++++DGL K G +    V+   M+  G  PDA  YN+
Sbjct: 263 LQLLAKMVELGCRANTVT----YSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNT 318

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI  +       +A G     LE                HP V++Y ++ + LC+    D
Sbjct: 319 LIDGFFKRQRLREAVGLLREMLEAG-------------FHPSVVTYTTLCHGLCRSGRFD 365

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI-PDTSSYNTL 355
           +A E+   M +RG  P+ + YSS++DG C  GR+ +A   F  +  +  + P   +Y+ L
Sbjct: 366 EAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSAL 425

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKF 402
           I+   K  K++EA      MI  G  PD                I    ELFR +     
Sbjct: 426 IDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGC 485

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
             D+  +  LVD LC++ R+  A++LF+++   G  P+  T   MI GL
Sbjct: 486 VPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGL 534



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 130/548 (23%), Positives = 219/548 (39%), Gaps = 113/548 (20%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +++ A+  F  M+     P + ++ +L+  L  ++       L E     G  P  V+ N
Sbjct: 10  KVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYN 69

Query: 127 ILMNCFCKMIGVSDAFVALGRI-LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
            +++  CK   + +A      + +   F P VVT   LI GLC   +  +   L  +   
Sbjct: 70  TMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAG 129

Query: 186 FDCRPNVI-------------------------------PNVICYASIIDGLCKDGFVNK 214
             C PN +                               P +I +  II GLCK+G +  
Sbjct: 130 RGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEA 189

Query: 215 V-RVL-FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
             RV+  + M   G+ PD   +NS++   C      DA      ALE             
Sbjct: 190 AFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERG----------- 238

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
             C P+V++Y ++I+ L K   +D+A +L   M   G   + V YS+++DG   +GR++D
Sbjct: 239 --CRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMED 296

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------- 382
           A  +   +   GC+PD  +YNTLI+ + K +++ EA+ L  EM+  G  P          
Sbjct: 297 AVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCH 356

Query: 383 ----------------------------------DNSC----ILEAAELFRTLHNTKFEL 404
                                             D  C    + EA   F  +   +   
Sbjct: 357 GLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVA 416

Query: 405 -DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
             +  ++ L+DGLCK+ ++  A+E  +++ R G  P+VVT++++I GLC  G I+     
Sbjct: 417 PHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRID----- 471

Query: 464 LPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
                         +EL   MA+R   PD +T + L + L +     E  +L     S  
Sbjct: 472 ------------TGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDG 519

Query: 524 QEESKLTR 531
               + TR
Sbjct: 520 LSPDRSTR 527



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 149/310 (48%), Gaps = 18/310 (5%)

Query: 66  VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
            ++++AL     M+ +       ++++++  L       + + +  ++   G LPD V+ 
Sbjct: 257 AKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTY 316

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           N L++ F K   + +A   L  +L   F P VVT   L  GLC  G+F EA  +     A
Sbjct: 317 NTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAA 376

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM-KGRGIYPDAFVYNSLIRVYCCA 244
             C     PN I Y+SI+DGLCK G V +    F  M +   + P    Y++LI   C A
Sbjct: 377 RGC----APNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKA 432

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                  G    A E  E  +      G I  PDV+++  +IN LC    +D   ELF  
Sbjct: 433 -------GKIDEAYEFLERMIRA----GRI--PDVVTFSILINGLCDAGRIDTGLELFRG 479

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M  RG +PD+V Y++L+D  C   R+D+A  LF  + S+G  PD S+  T+I+   ++ +
Sbjct: 480 MAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGLLEVNR 539

Query: 365 VEEALSLYGE 374
            E+A  +  E
Sbjct: 540 DEDAKRIQDE 549



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 164/359 (45%), Gaps = 51/359 (14%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K GE+E    +    +MI    +P + +FNS+L  L  ++  ++   + +R    G  P+
Sbjct: 183 KEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPN 242

Query: 122 FVSLNILMNCFCKMI-------------------------GVSDAFVALGR------ILR 150
            V+ + L++   KM                           V D  + +GR      +LR
Sbjct: 243 VVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLR 302

Query: 151 KVFS----PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGL 206
           ++      PD VT   LI G   + +  EA GL  + +         P+V+ Y ++  GL
Sbjct: 303 QMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREML----EAGFHPSVVTYTTLCHGL 358

Query: 207 CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266
           C+ G  ++   +   M  RG  P+A  Y+S++   C A       G  + AL   E+   
Sbjct: 359 CRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKA-------GRVTEALGYFEKMAR 411

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
                  +  P V++Y ++I+ LCK   +D+A E    M   G IPDVV +S LI+G C 
Sbjct: 412 DE-----VVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCD 466

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
            GRID   +LF  +   GC+PD  +Y TL++   +  +V+EA  L+ +M S G+ PD S
Sbjct: 467 AGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRS 525



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 128/273 (46%), Gaps = 40/273 (14%)

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           +I+ LCK   VDKA  LF  M  + I PDVV Y +LIDG     R+ +A  LF    ++G
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEM-ISMGVRP---------DNSC----ILEA 390
           C P   +YNT+I+   K  ++E AL+LY +M I  G RP         D  C    + + 
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKG 120

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
            +L   +       +   +N LV+ L    R + A+ L +++   G  P ++T+ ++I G
Sbjct: 121 CKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKG 180

Query: 451 LCIEGGIEKAYDLLPDM-----------------------EEKIRECLKAIELLHKMAKR 487
           LC EG IE A+ ++ +M                       E++I   L A  +  +  +R
Sbjct: 181 LCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRI---LDAHNVFKRALER 237

Query: 488 YVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
             +P+ +T S L + L+K     E + LL   +
Sbjct: 238 GCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMV 270


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 115/426 (26%), Positives = 195/426 (45%), Gaps = 74/426 (17%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD  + N L+N FCKM  + DA   L R+  K FSPD VT   +I  LC +GK   A  +
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 215

Query: 180 FTKFVAFDCRPNVI-------------------------------PNVICYASIIDGLCK 208
             + ++ +C+P VI                               P++  Y +II G+CK
Sbjct: 216 LNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCK 275

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           +G V++   +  +++ +G  PD   YN L+R       WE+ +   +             
Sbjct: 276 EGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEK------- 328

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                 C P+V++Y  +I +LC+D  +++A  L   MK +G+ PD   Y  LI  +C  G
Sbjct: 329 ------CDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREG 382

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---- 384
           R+D A +   ++ S+GC+PD  +YNT++ +  K  K ++AL ++G++  +G  P++    
Sbjct: 383 RLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYN 442

Query: 385 ---SCILEAAELFRTLH------NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
              S +  + +  R LH      +   + D   +N ++  LC+   +  A+EL   +   
Sbjct: 443 TMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSC 502

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEIT 495
              P+VVTY +++ G C    IE                  AI +L  M     +P+E T
Sbjct: 503 EFHPSVVTYNIVLLGFCKAHRIE-----------------DAINVLESMVGNGCRPNETT 545

Query: 496 VSILEE 501
            ++L E
Sbjct: 546 YTVLIE 551



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/415 (23%), Positives = 179/415 (43%), Gaps = 49/415 (11%)

Query: 133 CKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNV 192
           C+     ++   L  ++RK ++PDV+    LI+G        +A  +      F      
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQ---- 155

Query: 193 IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252
            P+V  Y ++I+G CK   ++    +   M+ +   PD   YN +I   C       ++G
Sbjct: 156 -PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLC-------SRG 207

Query: 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
               AL++  + ++ N      C P V++Y  +I +   +  VD+A +L  +M SRG+ P
Sbjct: 208 KLDLALKVLNQLLSDN------CQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKP 261

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
           D+  Y+++I G C  G +D A ++  ++E +G  PD  SYN L+ +     K EE   L 
Sbjct: 262 DMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLM 321

Query: 373 GEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            +M S    P+             +  I EA  L + +       D   ++ L+   C+ 
Sbjct: 322 TKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCRE 381

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE---------- 469
            RL  A E  + +   G  P++V Y  ++  LC  G  ++A ++   + E          
Sbjct: 382 GRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSY 441

Query: 470 --------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                      + ++A+ ++ +M    + PDEIT + +   L ++    E   LL
Sbjct: 442 NTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELL 496



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 151/316 (47%), Gaps = 25/316 (7%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + S+N LL AL  +  +     L  ++ +    P+ V+ +IL+   C+   + +A   
Sbjct: 296 PDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNL 355

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           L  +  K  +PD  +   LI   C +G+   A       ++  C    +P+++ Y +++ 
Sbjct: 356 LKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGC----LPDIVNYNTVLA 411

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
            LCK+G  ++   +F  +   G  P++  YN++         W  + G+   AL +  E 
Sbjct: 412 TLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSAL-----W--SSGDKIRALHMILEM 464

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           ++ NG       PD ++Y S+I+ LC++ +VD+A EL +DM+S    P VV Y+ ++ G+
Sbjct: 465 MS-NG-----IDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGF 518

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           C   RI+DA  +  S+   GC P+ ++Y  LI          EA+ L  +++ +    + 
Sbjct: 519 CKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRIDAISEY 578

Query: 385 SCILEAAELFRTLHNT 400
           S        F+ LH T
Sbjct: 579 S--------FKRLHRT 586



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 117/279 (41%), Gaps = 64/279 (22%)

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS-------------------------- 318
           I +  C+     ++  L   M  +G  PDV++ +                          
Sbjct: 95  IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG 154

Query: 319 --------SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
                   +LI+G+C M RIDDA ++   + S+   PDT +YN +I S     K++ AL 
Sbjct: 155 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALK 214

Query: 371 LYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
           +  +++S   +P                 + EA +L   + +   + D+  +N ++ G+C
Sbjct: 215 VLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMC 274

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKA 477
           K   +  A+E+ + L   G EP+V++Y +++  L  +G  E+         EK       
Sbjct: 275 KEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEG--------EK------- 319

Query: 478 IELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
             L+ KM      P+ +T SIL   L +D    E MNLL
Sbjct: 320 --LMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLL 356



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 9/159 (5%)

Query: 53  LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSER 112
           +L  L +N K+     + AL  F  +  +  +P   S+N++  AL      +  + +   
Sbjct: 409 VLATLCKNGKA-----DQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILE 463

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           + + G+ PD ++ N +++C C+   V +AF  L  +    F P VVT   ++ G C   +
Sbjct: 464 MMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHR 523

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF 211
             +A  +    V   CR    PN   Y  +I+G+   G+
Sbjct: 524 IEDAINVLESMVGNGCR----PNETTYTVLIEGIGFAGY 558


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 135/496 (27%), Positives = 225/496 (45%), Gaps = 83/496 (16%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + + ++L+  +  +   ++ + L +++   G   D +    L+N   K      A   
Sbjct: 7   PNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARRAVEL 66

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
             R+L ++ S +  T G +I  LC  G   +   +F + +       + PNVI Y+S+I+
Sbjct: 67  HRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINM----GICPNVIVYSSLIN 122

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           GLC+ G + +   LF +M  +GI  +   YNSLI   C    W++A    S  +      
Sbjct: 123 GLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMV------ 176

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
             G G L     PDV+++ ++I+ L K   V +A ++F  M  +G  P++V Y+SL++G 
Sbjct: 177 --GEGIL-----PDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGL 229

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD- 383
           CL  ++D A +LF  +   G   D  SYNTLIN Y    K EEA++L+ +M    + P  
Sbjct: 230 CLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSI 289

Query: 384 -----------------------------------------------NSCILEAAELFRT 396
                                                          N CI EA ++FR+
Sbjct: 290 TTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRS 349

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           L + K++  + +++ L+ G+ ++ R  SA E+F ++P  G  PN+VTY +MI GLC EG 
Sbjct: 350 LKSIKYKPSIRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGK 409

Query: 457 IEKAYDLLPDMEEK------------IR------ECLKAIELLHKMAKRYVKPDEITVSI 498
           + +A  L   MEE             IR      +  KA+E L +M ++   P++    +
Sbjct: 410 LLEAERLFVQMEESGCEQDEISFNFIIRGFLQENQVQKAMEFLKRMREKNFSPNDSVTLM 469

Query: 499 LEELLNKDENCHECMN 514
           L  L   D    E  N
Sbjct: 470 LVNLYAADAQSSELPN 485



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 186/405 (45%), Gaps = 49/405 (12%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
            L  F  MI+M   P +  ++SL+  L         + L + + + G+  + ++ N L++
Sbjct: 98  GLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIH 157

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
             C+     +A     +++ +   PDVVT   LI  L  +GK  EA  +F   +    + 
Sbjct: 158 ASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMI----KQ 213

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
              PN++ Y S+++GLC    ++    LF  M  RGI  D   YN+LI  YC +      
Sbjct: 214 GEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTS------ 267

Query: 251 KGNTSAALEL-----HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
            G T  A+ L     +EE             P + +Y  ++ +L ++  +  AKELF +M
Sbjct: 268 -GKTEEAMTLFRKMQYEELT-----------PSITTYTILLKALYQNGRIRTAKELFNNM 315

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
           +  G  P +  Y+ L+DG C  G I++A  +F S++S    P    Y+ LI    +  + 
Sbjct: 316 QICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRW 375

Query: 366 EEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
           E A+ ++ E+ ++G+ P                      ++  +N +++GLCK  +L  A
Sbjct: 376 ESAMEIFDEIPTVGLVP----------------------NIVTYNIMINGLCKEGKLLEA 413

Query: 426 WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
             LF ++   G E + +++  +I G   E  ++KA + L  M EK
Sbjct: 414 ERLFVQMEESGCEQDEISFNFIIRGFLQENQVQKAMEFLKRMREK 458



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 145/310 (46%), Gaps = 22/310 (7%)

Query: 51  TKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLS 110
           T L+ +LS   K G+V+  +A   F  MI     P + ++NSLL  L       + + L 
Sbjct: 188 TTLIDHLS---KKGKVQ--EAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLF 242

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           E +   G+  D +S N L+N +C      +A     ++  +  +P + T   L++ L   
Sbjct: 243 EVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQN 302

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G+   A  LF       C  +  P++  Y  ++DGLCK+G + +   +F  +K     P 
Sbjct: 303 GRIRTAKELFNNMQI--CGQS--PSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPS 358

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
             +Y+ LI     A  WE       +A+E+ +E       +G++  P++++Y  +IN LC
Sbjct: 359 IRIYSILIGGMFQARRWE-------SAMEIFDEIPT----VGLV--PNIVTYNIMINGLC 405

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K+  + +A+ LF+ M+  G   D + ++ +I G+    ++  A +    +  +   P+ S
Sbjct: 406 KEGKLLEAERLFVQMEESGCEQDEISFNFIIRGFLQENQVQKAMEFLKRMREKNFSPNDS 465

Query: 351 SYNTLINSYS 360
               L+N Y+
Sbjct: 466 VTLMLVNLYA 475



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 108/239 (45%), Gaps = 31/239 (12%)

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           MKS G  P++V  S+L+ G C  G++ DA +LF  +   G   D   Y  LIN+  K  +
Sbjct: 1   MKS-GYQPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQ 59

Query: 365 VEEALSLYGEMIS---------MGVRPDNSC----ILEAAELFRTLHNTKFELDLTVFNC 411
              A+ L+  M+S          G+  D+ C     ++  ++FR + N     ++ V++ 
Sbjct: 60  ARRAVELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSS 119

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI 471
           L++GLC+  +LR A  LF ++   G + NV+TY  +I   C   G+ K            
Sbjct: 120 LINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASC-RFGLWK------------ 166

Query: 472 RECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
               +A     +M    + PD +T + L + L+K     E   +    + + +  + +T
Sbjct: 167 ----EATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVT 221


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 129/451 (28%), Positives = 199/451 (44%), Gaps = 59/451 (13%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           +K+G+  LNDA   F  ++H   TP   ++ SL+  L     + +   L   +N  G  P
Sbjct: 21  AKAGK--LNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPP 78

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
             V+ N++++  CK   + +A   + +++     PDVVT   ++ GLC  G+  EA  LF
Sbjct: 79  SPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLF 138

Query: 181 TKFVAFDCRPN-------------------------------VIPNVICYASIIDGLCKD 209
            +     C PN                               + P+   Y  +IDGL K 
Sbjct: 139 NEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAKA 198

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
           G +N+   LF  M   GI P A  YN +I   C A   ++       ALEL +   +   
Sbjct: 199 GKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDE-------ALELFKSMRSKG- 250

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
                C P   ++  +I++ CK   +D+A  L   M   G +PDVV YS+LI G C + R
Sbjct: 251 -----CRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIAR 305

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NS 385
           +DDAR L   +    C P   + NTLI+   K  +++EA  +   M+S G  PD    N+
Sbjct: 306 VDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNT 365

Query: 386 CIL---------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
            +           A EL   +       ++  +  LV GLCK+ RL  A  +F ++   G
Sbjct: 366 LVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSG 425

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
             PN+ TYT +I G C  G ++    L  +M
Sbjct: 426 CAPNLFTYTALILGFCSAGQVDGGLKLFGEM 456



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 119/453 (26%), Positives = 202/453 (44%), Gaps = 63/453 (13%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           KSG VE  +AL  FN M  +  TP   S N+++  L  +        +   +    + PD
Sbjct: 127 KSGRVE--EALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPD 184

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             S  IL++   K   +++A+    R+L    +P  VT   +I G+C+     EA  LF 
Sbjct: 185 SWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFK 244

Query: 182 KFVAFDCRPNV-------------------------------IPNVICYASIIDGLCKDG 210
              +  CRP+                                +P+V+ Y+++I GLC   
Sbjct: 245 SMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIA 304

Query: 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGE 270
            V+  R L  DM  R   P     N+LI   C A       G    A E+ +  V+ +G+
Sbjct: 305 RVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKA-------GRIKEAREVLDAMVS-SGQ 356

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
                 PDV++Y ++++  C+    ++A+EL  DM +RG+ P+VV Y++L+ G C   R+
Sbjct: 357 -----SPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRL 411

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE- 389
            +A  +F  ++S GC P+  +Y  LI  +    +V+  L L+GEM+  G+ PD+      
Sbjct: 412 PEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTL 471

Query: 390 AAELFRTLHNTKFELDL---------------TVFNCLVDGLCKSWRLRSAWELFKKLPR 434
           AAEL ++  + +  L++                V+   VDGL  + ++  A    + + R
Sbjct: 472 AAELCKSGRSAR-ALEILREGRESLRSEAWGDEVYRFAVDGLLDAGKMEMALGFVRDMVR 530

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            G  P       ++ GLC  G   +A  +L ++
Sbjct: 531 GGQLPAPERCASLVAGLCKSGQGGEARAVLEEI 563



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 176/371 (47%), Gaps = 44/371 (11%)

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
           NV P+   Y  +IDGL K G +N  R LF  +   G+ P    Y SLI   C A +++DA
Sbjct: 5   NVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDA 64

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
           +       EL  + +N  G     C P  ++Y  II++ CK  ++++A +L   M   G 
Sbjct: 65  R-------ELFAD-MNRRG-----CPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGH 111

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
           +PDVV Y++++DG C  GR+++A  LF  +E  GC P+  S+NT+I    +  K+++A  
Sbjct: 112 VPDVVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQ 171

Query: 371 LYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
           ++ EM +  + PD+               + EA +LFR + ++        +N ++ G+C
Sbjct: 172 VFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMC 231

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE-------- 469
            ++ L  A ELFK +   G  P+  T+ ++I   C  G +++A+ LL  M +        
Sbjct: 232 LAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVV 291

Query: 470 ----------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519
                      I     A  LL  M KR  KP  +T + L   L K     E   +L + 
Sbjct: 292 TYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAM 351

Query: 520 LSRNQEESKLT 530
           +S  Q    +T
Sbjct: 352 VSSGQSPDVVT 362



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 159/341 (46%), Gaps = 44/341 (12%)

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
           M  R + PD++ Y  LI     A    DA+       +L ++ ++     GV   P  ++
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDAR-------DLFQKLLHS----GVT--PSTVA 47

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y S+I+ LC     D A+ELF DM  RG  P  V Y+ +ID  C  G +++A  L   + 
Sbjct: 48  YTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMI 107

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCIL--------- 388
            +G +PD  +YNT+++   K  +VEEAL L+ EM  +G  P+    N+ IL         
Sbjct: 108 EDGHVPDVVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKID 167

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
           +A ++F  +       D   +  L+DGL K+ +L  A++LF+++   G  P+ VTY V+I
Sbjct: 168 QACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVI 227

Query: 449 CGLCIEGGIEKAYDLLPDMEEK-------------IRECLK-----AIELLHKMAKRYVK 490
            G+C+   +++A +L   M  K                C +     A  LL +M      
Sbjct: 228 HGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHV 287

Query: 491 PDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLTR 531
           PD +T S L   L       +  +LL   + R  + + +T+
Sbjct: 288 PDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQ 328


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 124/479 (25%), Positives = 207/479 (43%), Gaps = 98/479 (20%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ PD ++ N L++  CK   V ++     +++++   P++ T    I+GLC +G   EA
Sbjct: 211 GICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEA 270

Query: 177 SGLFTKFVAFDCRPNVI-------------------------------PNVICYASIIDG 205
           + L    V+    P+VI                               PN   Y +II+G
Sbjct: 271 ARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIING 330

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC--------CAVNWEDAKGNTSAA 257
            CK G +     +  D   +G  PD F Y+SLI   C         AV +E  +     +
Sbjct: 331 FCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHS 390

Query: 258 LELHEEFVNGNGELGVI--------------CHPDVLSYCSIINSLCKDVLVDKAKELFL 303
           + L+   V G  + G++              C PD+ +Y  ++N LCK   +  A  +  
Sbjct: 391 IILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILN 450

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
           D  ++G IPD+  +++LIDGYC    +D A ++  ++ S G  PD  +YNTL+N   K  
Sbjct: 451 DAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKAR 510

Query: 364 KVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLR 423
           K++  +  +  M+  G  P                      ++  +N L++  CK  ++ 
Sbjct: 511 KLDNVVDTFKAMLEKGCTP----------------------NIITYNILIESFCKDRKVS 548

Query: 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIR----------- 472
            A ELFK++   G  P++VT   +ICGLC  G ++KAY+L   +E++ +           
Sbjct: 549 EAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIM 608

Query: 473 ---ECLK-----AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
               C K     A +L HKM      PD  T  ++ +   K  N    ++L  +FL  N
Sbjct: 609 INAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGN----IDLAHTFLLEN 663



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/395 (29%), Positives = 185/395 (46%), Gaps = 31/395 (7%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           TP + S+N+L+         V   C   ++   G+ P+  + N ++N FCK   + +A  
Sbjct: 283 TPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADK 342

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
            L   + K F PD  T   LI GLC  G    A  +F + +          ++I Y +++
Sbjct: 343 ILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAM----EKGFKHSIILYNTLV 398

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
            GL K G V +   L  DM   G  PD + YN ++   C      DA G       L++ 
Sbjct: 399 KGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANG------ILNDA 452

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
              G       C PD+ ++ ++I+  CK   +DKA E+   M S GI PDV+ Y++L++G
Sbjct: 453 IAKG-------CIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNG 505

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            C   ++D+    F ++  +GC P+  +YN LI S+ K  KV EA+ L+ EM + G+ PD
Sbjct: 506 LCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPD 565

Query: 384 -------------NSCILEAAELFRTLHNT-KFELDLTVFNCLVDGLCKSWRLRSAWELF 429
                        N  + +A ELF T+    KF     +FN +++  C    +  A +LF
Sbjct: 566 IVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCXKLNVSMAEKLF 625

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            K+      P+  TY VMI   C  G I+ A+  L
Sbjct: 626 HKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFL 660



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 101/387 (26%), Positives = 176/387 (45%), Gaps = 60/387 (15%)

Query: 131 CFCKMIGVSDAFVALGRIL---RKVFSPDV---VTLGCLIRGLCMQGKFTEASGLFTKFV 184
           C  + +G+   F A+  +L   RK     +   V +G ++R    +GK  EA  +F +  
Sbjct: 45  CMIEKLGLHGKFEAMEDVLAEMRKNVDSKMLEGVYIG-IMRDYGRKGKVQEAVNVFERMD 103

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
            +DC P+V      Y +I++ L + G+ ++   +++ MK  GIYPD + +   ++ +C  
Sbjct: 104 FYDCEPSVQS----YNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCIT 159

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICH---------------------------- 276
                  G  +AAL L         E   + +                            
Sbjct: 160 -------GRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGI 212

Query: 277 -PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
            PD+L++  +I+ LCK   V ++++LF  +  RG+ P++  ++  I G C  G ID+A +
Sbjct: 213 CPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAAR 272

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCI---- 387
           L  SI SEG  PD  SYNTLI  + K  K+ EA     +M++ GV P+    N+ I    
Sbjct: 273 LLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFC 332

Query: 388 -----LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
                  A ++ R      F  D   ++ L++GLC    +  A  +F +    G + +++
Sbjct: 333 KAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSII 392

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEE 469
            Y  ++ GL  +G + +A  L+ DM E
Sbjct: 393 LYNTLVKGLSKQGLVLQALQLMKDMME 419



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 137/302 (45%), Gaps = 24/302 (7%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+DA    N  I     P + +FN+L+     ++     I + + + + G+ PD ++ N 
Sbjct: 442 LSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNT 501

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N  CK   + +       +L K  +P+++T   LI   C   K +EA  LF +     
Sbjct: 502 LLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKT-- 559

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYP-DAFVYNSLIRVYCCAVN 246
               + P+++   ++I GLC +G ++K   LF+ ++    +     ++N +I  +C  +N
Sbjct: 560 --RGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCXKLN 617

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                      + + E+  +  G  G  C PD  +Y  +I+S CK   +D A    L+  
Sbjct: 618 -----------VSMAEKLFHKMG--GSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENI 664

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           S+G++P       +++  C+  R+ +A  +   +   G +P+       +NS  + +K E
Sbjct: 665 SKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPEE------VNSIFEADKKE 718

Query: 367 EA 368
            A
Sbjct: 719 VA 720


>gi|12324355|gb|AAG52147.1|AC022355_8 hypothetical protein; 57683-56685 [Arabidopsis thaliana]
          Length = 332

 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 178/353 (50%), Gaps = 43/353 (12%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  PD V+   LMN  C    V  A   + R++ +   P     G +I GLC  G    A
Sbjct: 5   GCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGDTESA 60

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L +K        ++  +V+ Y +IID LCKDG     + LF +M  +GI+PD   Y+ 
Sbjct: 61  LNLLSKME----ETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSG 116

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           +I  +C +  W DA+       ++ E  +N          PDV+++ ++IN+L K+  V 
Sbjct: 117 MIDSFCRSGRWTDAE---QLLRDMIERQIN----------PDVVTFSALINALVKEGKVS 163

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A+E++ DM  RGI P  + Y+S+IDG+C   R++DA+++  S+ S+ C PD  +++TLI
Sbjct: 164 EAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLI 223

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           N Y K ++V+  + ++ EM   G+                + NT        +  L+ G 
Sbjct: 224 NGYCKAKRVDNGMEIFCEMHRRGI----------------VANT------VTYTTLIHGF 261

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           C+   L +A +L   +   G  PN +T+  M+  LC +  + KA+ +L D+++
Sbjct: 262 CQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSKKELRKAFAILEDLQK 314



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 139/323 (43%), Gaps = 55/323 (17%)

Query: 63  SGEVELNDALCFFNYMIHMQPTPFMPS---FNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           +G  ++ D     N +  M+ T        +N+++  L    ++++   L   ++  G+ 
Sbjct: 49  NGLCKMGDTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIF 108

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD ++ + +++ FC+    +DA   L  ++ +  +PDVVT   LI  L  +GK +EA  +
Sbjct: 109 PDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEI 168

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           +   +    R  + P  I Y S+IDG CK   +N  + +   M  +   PD   +++LI 
Sbjct: 169 YGDML----RRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLIN 224

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            YC                                                K   VD   
Sbjct: 225 GYC------------------------------------------------KAKRVDNGM 236

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           E+F +M  RGI+ + V Y++LI G+C +G +D A+ L   + S G  P+  ++ +++ S 
Sbjct: 237 EIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASL 296

Query: 360 SKIEKVEEALSLYGEMISMGVRP 382
              +++ +A ++  ++    V P
Sbjct: 297 CSKKELRKAFAILEDLQKSEVCP 319



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 101/229 (44%), Gaps = 41/229 (17%)

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M   G  PDVV +++L++G C  GR+  A  L   +  EG  P    Y T+IN   K+  
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGD 56

Query: 365 VEEALSLYGEMISMGVRPD----NSCI---------LEAAELFRTLHNTKFELDLTVFNC 411
            E AL+L  +M    ++      N+ I         + A  LF  +H+     D+  ++ 
Sbjct: 57  TESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSG 116

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM---- 467
           ++D  C+S R   A +L + +      P+VVT++ +I  L  EG + +A ++  DM    
Sbjct: 117 MIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRG 176

Query: 468 -----------------EEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                            ++++ +   A  +L  MA +   PD +T S L
Sbjct: 177 IFPTTITYNSMIDGFCKQDRLND---AKRMLDSMASKSCSPDVVTFSTL 222


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 130/441 (29%), Positives = 205/441 (46%), Gaps = 57/441 (12%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A+     M+     P   ++NS++            I   +++++ G+ PD V+ N 
Sbjct: 250 MDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNS 309

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           LM+  CK    ++A      + ++   P++ T G L++G   +G   E  GL    V   
Sbjct: 310 LMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNG 369

Query: 188 CRPN-------------------------------VIPNVICYASIIDGLCKDGFVNKVR 216
             PN                               + P+ + Y ++I  LCK G V    
Sbjct: 370 IHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAM 429

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
             F  M    + P   VYNSLI   C    W+ AK       EL  E ++       IC 
Sbjct: 430 RYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK-------ELILEMLDRG-----IC- 476

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
            D + + SII+S CK+  V ++++LF  M   G+ PD++ YS+LIDGYCL G++D+A KL
Sbjct: 477 LDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKL 536

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCILE---- 389
             S+ S G  PD  +YNTLIN Y KI ++E+AL L+ EM S GV PD    + IL+    
Sbjct: 537 LASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQ 596

Query: 390 ------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                 A EL+  +  +  +L+L+ +N ++ GLCK+     A  +F+ L     +    T
Sbjct: 597 TRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRT 656

Query: 444 YTVMICGLCIEGGIEKAYDLL 464
           + +MI  L   G  ++A DL 
Sbjct: 657 FNIMIGALLKVGRNDEAKDLF 677



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 185/403 (45%), Gaps = 61/403 (15%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+LP+ V+ + ++   CK   +  A   L  +++    P+  T   ++ G C  G+  EA
Sbjct: 229 GILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEA 288

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
            G   K  +      V P+V+ Y S++D LCK+G   + R +F  M  RG+ P+   Y +
Sbjct: 289 IGFLKKMHS----DGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGT 344

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHE--EFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294
           L++ Y         KG   A +E+H   + +  NG      HP+   +  +I +  K   
Sbjct: 345 LLQGYA-------TKG---ALVEMHGLLDLMVRNG-----IHPNHYVFSILICAYAKQGK 389

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           VD+A  +F  M+ +G+ PD V Y ++I   C  GR++DA + F  +  E   P    YN+
Sbjct: 390 VDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNS 449

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           LI+S    +K ++A  L  EM+  G+     C                 LD   FN ++D
Sbjct: 450 LIHSLCIFDKWDKAKELILEMLDRGI-----C-----------------LDTIFFNSIID 487

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE----- 469
             CK  R+  + +LF  + R G +P+++TY+ +I G C+ G +++A  LL  M       
Sbjct: 488 SHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKP 547

Query: 470 -------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                        KI     A+ L  +M    V PD IT +I+
Sbjct: 548 DCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNII 590



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 170/384 (44%), Gaps = 66/384 (17%)

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP-----NVICYASIIDGLCK 208
           +P++ T G LI   C  G+           + F    NVI      + I +  ++ GLC 
Sbjct: 88  TPNLCTYGILIGSCCCAGRLD---------LGFAALGNVIKKGFRVDAIAFTPLLKGLCA 138

Query: 209 DGFV-NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
           D    + + ++   M   G  P+ F YN L++  C        +  +  ALEL +   + 
Sbjct: 139 DKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLC-------DENRSQEALELLQMMPDD 191

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
            G+    C PDV+SY ++IN   K+  +DKA   + +M  RGI+P+VV YSS+I   C  
Sbjct: 192 GGD----CPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKA 247

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
             +D A ++  S+   G +P+  +YN++++ Y    + +EA+    +M S GV P     
Sbjct: 248 QAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEP----- 302

Query: 388 LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
                            D+  +N L+D LCK+ R   A ++F  + + G +P + TY  +
Sbjct: 303 -----------------DVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTL 345

Query: 448 ICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYV 489
           + G   +G + + + LL  M                    K  +  +A+ +  KM ++ +
Sbjct: 346 LQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGL 405

Query: 490 KPDEITVSILEELLNKDENCHECM 513
            PD +T   +  +L K     + M
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAM 429



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 120/481 (24%), Positives = 201/481 (41%), Gaps = 71/481 (14%)

Query: 39  LHSNSVS-TVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGAL 97
           +HS+ V   V     L+ YL +N +  E     A   F+ M      P + ++ +LL   
Sbjct: 295 MHSDGVEPDVVTYNSLMDYLCKNGRCTE-----ARKMFDSMTKRGLKPEITTYGTLLQGY 349

Query: 98  AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDV 157
           A K   V    L + +   G+ P+    +IL+  + K   V  A +   ++ ++  +PD 
Sbjct: 350 ATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDT 409

Query: 158 VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRV 217
           VT G +I  LC  G+  +A   F + +  D R  + P  I Y S+I  LC     +K + 
Sbjct: 410 VTYGTVIGILCKSGRVEDAMRYFEQMI--DER--LSPGNIVYNSLIHSLCIFDKWDKAKE 465

Query: 218 LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277
           L L+M  RGI  D   +NS+I  +C        +G    + +L +  V     +GV   P
Sbjct: 466 LILEMLDRGICLDTIFFNSIIDSHC-------KEGRVIESEKLFDLMV----RIGV--KP 512

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           D+++Y ++I+  C    +D+A +L   M S G+ PD V Y++LI+GYC + R++DA  LF
Sbjct: 513 DIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLF 572

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------- 383
             +ES G  PD  +YN ++    +  +   A  LY  +   G + +              
Sbjct: 573 REMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKN 632

Query: 384 -----------NSCIL-----------------------EAAELFRTLHNTKFELDLTVF 409
                      N C+                        EA +LF  L       D+  +
Sbjct: 633 NLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTY 692

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           + + + L +   L    +LF  +   G   N      ++  L   G I +A   L  ++E
Sbjct: 693 SLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDE 752

Query: 470 K 470
           K
Sbjct: 753 K 753


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 113/400 (28%), Positives = 192/400 (48%), Gaps = 32/400 (8%)

Query: 81  MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSD 140
           M+P  +  ++N+L+  L G+    N + + + +   G +PD V+  IL+   CK  G   
Sbjct: 148 MEPDTY--TYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQ 205

Query: 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200
           A   L  +  K  +PD+VT   ++ G+C +G+  +A        ++ C PN +     Y 
Sbjct: 206 AVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTV----SYN 261

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL 260
            ++ GLC          L  +M  +G  P+   +N LI   C        +G    A+E+
Sbjct: 262 IVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLC-------RRGLVEPAMEI 314

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
            ++           C P+ LSY  I+++ CK   +D+A      M S G  PD+V Y++L
Sbjct: 315 LDQIPKYG------CTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTL 368

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           +   C  G +D A +L   ++ +GC P   SYNT+I+  +K  K EEAL L  EM++ G+
Sbjct: 369 LTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGL 428

Query: 381 RPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           +PD                I EA + F  + +     +  ++N ++ GLCK     SA +
Sbjct: 429 QPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAID 488

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           LF  +   G  PN  TYT++I GL  EG +++A +++ ++
Sbjct: 489 LFTYMVSNGCMPNESTYTILIEGLAYEGLVKEAREMMAEL 528



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 176/386 (45%), Gaps = 65/386 (16%)

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           LI+ LC  G+  EA     + V   C P+V+     Y +++ G C  G ++  R L   M
Sbjct: 96  LIKKLCASGRTAEA-----RRVLASCEPDVM----SYNAMVAGYCVTGQLDNARRLVAAM 146

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
               + PD + YN+LIR  C        +G T  AL + ++ +         C PDV++Y
Sbjct: 147 P---MEPDTYTYNTLIRGLC-------GRGRTDNALAVLDDMLRRG------CVPDVVTY 190

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
             ++ + CK     +A +L  +M+ +G  PD+V Y+ +++G C  GR+DDA +   S+ S
Sbjct: 191 TILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPS 250

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF 402
            GC P+T SYN ++      E+ E+A  L  EM   G RP N                  
Sbjct: 251 YGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKG-RPPN------------------ 291

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
              +  FN L+  LC+   +  A E+  ++P+YG  PN ++Y  ++   C +  +++A  
Sbjct: 292 ---VVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMA 348

Query: 463 LL---------PDMEE---------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLN 504
            +         PD+           +  E   A+ELLH++  +   P  I+ + + + L 
Sbjct: 349 FVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLT 408

Query: 505 KDENCHECMNLLPSFLSRNQEESKLT 530
           K     E + LL   +++  +   +T
Sbjct: 409 KAGKTEEALELLNEMVTKGLQPDIIT 434



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/395 (24%), Positives = 175/395 (44%), Gaps = 61/395 (15%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKV-FSPDVVTLGCLIRGLCMQGKFTEASG 178
           PD +S N ++  +C    V+       R++  +   PD  T   LIRGLC +G+   A  
Sbjct: 118 PDVMSYNAMVAGYC----VTGQLDNARRLVAAMPMEPDTYTYNTLIRGLCGRGRTDNALA 173

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           +    +   C    +P+V+ Y  +++  CK     +   L  +M+ +G  PD   YN ++
Sbjct: 174 VLDDMLRRGC----VPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVV 229

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
              C     +DA            EF+      G  C P+ +SY  ++  LC     + A
Sbjct: 230 NGICQEGRVDDAM-----------EFLKSLPSYG--CEPNTVSYNIVLKGLCTAERWEDA 276

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
           ++L  +M  +G  P+VV ++ LI   C  G ++ A ++   I   GC P++ SYN ++++
Sbjct: 277 EKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHA 336

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
           + K +K++ A++    M+S G  PD                      +  +N L+  LC+
Sbjct: 337 FCKQKKMDRAMAFVELMVSSGCYPD----------------------IVSYNTLLTALCR 374

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAI 478
              + +A EL  +L   G  P +++Y  +I GL   G  E                 +A+
Sbjct: 375 GGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTE-----------------EAL 417

Query: 479 ELLHKMAKRYVKPDEITVSILEELLNKDENCHECM 513
           ELL++M  + ++PD IT S +   L ++    E +
Sbjct: 418 ELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAI 452



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 156/383 (40%), Gaps = 79/383 (20%)

Query: 64  GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV 123
           G    ++AL   + M+     P + ++  LL A   +  Y   + L + +   G  PD V
Sbjct: 164 GRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIV 223

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL---- 179
           + N+++N  C+   V DA   L  +      P+ V+   +++GLC   ++ +A  L    
Sbjct: 224 TYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEM 283

Query: 180 -----------FTKFVAFDCRPNVI----------------PNVICYASIIDGLCKDGFV 212
                      F   ++F CR  ++                PN + Y  I+   CK   +
Sbjct: 284 SRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKM 343

Query: 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
           ++       M   G YPD   YN+L+   C         G   AA+EL  +  +      
Sbjct: 344 DRAMAFVELMVSSGCYPDIVSYNTLLTALC-------RGGEVDAAVELLHQLKDKG---- 392

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
             C P ++SY ++I+ L K    ++A EL  +M ++G+ PD++ YS++  G C  GRI++
Sbjct: 393 --CTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEE 450

Query: 333 ARKLFVSIE-----------------------------------SEGCIPDTSSYNTLIN 357
           A K F  ++                                   S GC+P+ S+Y  LI 
Sbjct: 451 AIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIE 510

Query: 358 SYSKIEKVEEALSLYGEMISMGV 380
             +    V+EA  +  E+ S GV
Sbjct: 511 GLAYEGLVKEAREMMAELCSRGV 533



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 117/243 (48%), Gaps = 20/243 (8%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           TP   S+N +L A   +K     +   E + + G  PD VS N L+   C+   V  A  
Sbjct: 324 TPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVE 383

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
            L ++  K  +P +++   +I GL   GK  EA  L  + V       + P++I Y++I 
Sbjct: 384 LLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVT----KGLQPDIITYSTIS 439

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
            GLC++G + +    F  ++  GI P+  +YN+++   C        +  T +A++L   
Sbjct: 440 SGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLC-------KRRATHSAIDLFTY 492

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSS---L 320
            V+ NG     C P+  +Y  +I  L  + LV +A+E+  ++ SRG++   +V      L
Sbjct: 493 MVS-NG-----CMPNESTYTILIEGLAYEGLVKEAREMMAELCSRGVVSKTLVNKGAIRL 546

Query: 321 IDG 323
           +DG
Sbjct: 547 LDG 549



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 129/314 (41%), Gaps = 40/314 (12%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  ++DA+ F   +      P   S+N +L  L   + + +   L   ++  G  P+ V+
Sbjct: 235 EGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVT 294

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N+L++  C+   V  A   L +I +   +P+ ++   ++   C Q K   A       V
Sbjct: 295 FNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMV 354

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
           +  C     P+++ Y +++  LC+ G V+    L   +K +G  P    YN++I      
Sbjct: 355 SSGC----YPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVI------ 404

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICH---------------------------- 276
            +     G T  ALEL  E V    +  +I +                            
Sbjct: 405 -DGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGI 463

Query: 277 -PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
            P+ + Y +I+  LCK      A +LF  M S G +P+   Y+ LI+G    G + +AR+
Sbjct: 464 RPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAYEGLVKEARE 523

Query: 336 LFVSIESEGCIPDT 349
           +   + S G +  T
Sbjct: 524 MMAELCSRGVVSKT 537


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 135/507 (26%), Positives = 225/507 (44%), Gaps = 94/507 (18%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A+   N M+     P   ++NS+L            I   +++ + G+ P+ V+ + 
Sbjct: 252 MDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSS 311

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           LMN  CK    ++A      + ++   PD+ T   L++G   +G   E   L    V   
Sbjct: 312 LMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNG 371

Query: 188 CRP-----NVI--------------------------PNVICYASIIDGLCKDGFVNKVR 216
            +P     N++                          PNV+CY ++ID LCK G V+   
Sbjct: 372 IQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAM 431

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
           + F  M   G+ P+  VY SLI   C    W+ A+       EL  E ++       IC 
Sbjct: 432 LYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAE-------ELILEMLDRG-----ICL 479

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
            + + + SII+S CK+  V ++++LF  M   G+ PD++ Y++LIDG CL G++D+A KL
Sbjct: 480 -NTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKL 538

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------- 383
             S+ S G  PD  +Y TLIN Y ++ ++++AL+L+ EM+S GV P+             
Sbjct: 539 LASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFH 598

Query: 384 -----------------------------------NSCILEAAELFRTLHNTKFELDLTV 408
                                              N+   EA  +F+ L  T  +L+   
Sbjct: 599 TRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRT 658

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           FN ++  L K  R+  A +LF      G  P+V TY++M   L  +G +E+  DL   ME
Sbjct: 659 FNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSME 718

Query: 469 EKIRECLKAIELLHKMAKRYVKPDEIT 495
           E    C     +L+ + ++ ++  +IT
Sbjct: 719 EN--GCSADSRMLNSIVRKLLQRGDIT 743



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/416 (27%), Positives = 198/416 (47%), Gaps = 67/416 (16%)

Query: 85  PFMPSFNSLLGAL----AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSD 140
           P + S+N++L          K Y  +  + +R    G+LPD V+ + ++   CK   +  
Sbjct: 199 PDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDR----GILPDVVTYSSIIAALCKAQAMDK 254

Query: 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200
           A   L  +++    PD +T   ++ G C  G+  EA G   K  +      V PNV+ Y+
Sbjct: 255 AMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRS----DGVEPNVVTYS 310

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL 260
           S+++ LCK+G   + R +F  M  RG+ PD   Y +L++ Y         KG   A +E+
Sbjct: 311 SLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYA-------TKG---ALVEM 360

Query: 261 HE--EFVNGNGELG-------VIC-----------------------HPDVLSYCSIINS 288
           H   + +  NG          +IC                       +P+V+ Y ++I+ 
Sbjct: 361 HALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDV 420

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           LCK   VD A   F  M   G+ P+++VY+SLI G C   + D A +L + +   G   +
Sbjct: 421 LCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLN 480

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------NSCIL-----EAAELFR 395
           T  +N++I+S+ K  +V E+  L+  M+ +GV+PD        + C L     EA +L  
Sbjct: 481 TIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLA 540

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
           ++ +   + D+  +  L++G C+  R+  A  LFK++   G  PN++TY +++ GL
Sbjct: 541 SMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGL 596



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/358 (27%), Positives = 170/358 (47%), Gaps = 34/358 (9%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P   +  IL+ C C+   +   F ALG +++K F  D +T   L++GLC   + ++A  +
Sbjct: 90  PTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDI 149

Query: 180 -FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLF---LDMKGRGIYPDAFVYN 235
              +     C    IP+V  Y +++ GLC +    +   L     D +G G  PD   YN
Sbjct: 150 VLRRMTELGC----IPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYN 205

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           +++       N    +G++  A   + E +    + G++  PDV++Y SII +LCK   +
Sbjct: 206 TVL-------NGFFKEGDSDKAYSTYHEML----DRGIL--PDVVTYSSIIAALCKAQAM 252

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           DKA E+   M   G++PD + Y+S++ GYC  G+  +A      + S+G  P+  +Y++L
Sbjct: 253 DKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSL 312

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKF 402
           +N   K  +  EA  ++  M   G+ PD                ++E   L   +     
Sbjct: 313 MNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGI 372

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
           + D  VFN L+    K  ++  A  +F K+ ++G  PNVV Y  +I  LC  G ++ A
Sbjct: 373 QPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDA 430



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 109/270 (40%), Gaps = 42/270 (15%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P V +Y  +I   C+   +D       ++  +G   D + ++ L+ G C   R  DA  +
Sbjct: 90  PTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDI 149

Query: 337 FVSIESE-GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS--MGVRPDNSCILEAAEL 393
            +   +E GCIPD  SYN L+       + +EAL L   M     G  P           
Sbjct: 150 VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPP---------- 199

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
                      D+  +N +++G  K      A+  + ++   G  P+VVTY+ +I  LC 
Sbjct: 200 -----------DVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCK 248

Query: 454 EGGIEKAYDLLPDMEEK--IRECL----------------KAIELLHKMAKRYVKPDEIT 495
              ++KA ++L  M +   + +C+                +AI  L KM    V+P+ +T
Sbjct: 249 AQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVT 308

Query: 496 VSILEELLNKDENCHECMNLLPSFLSRNQE 525
            S L   L K+    E   +  S   R  E
Sbjct: 309 YSSLMNYLCKNGRSTEARKIFDSMTKRGLE 338



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/287 (20%), Positives = 125/287 (43%), Gaps = 21/287 (7%)

Query: 74  FFNYMIHMQPTPFMPSFNSLLGA--LAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131
            F+ M+ +   P + ++N+L+    LAGK      +  S  + ++G+ PD V+   L+N 
Sbjct: 503 LFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLAS--MVSVGVKPDIVTYGTLING 560

Query: 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
           +C++  + DA      ++    SP+++T   +++GL    +   A  L+        +  
Sbjct: 561 YCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSIT----KSG 616

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
               +  Y  I+ GLCK+   ++   +F ++    +  +   +N +I         ++AK
Sbjct: 617 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAK 676

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
              +A         + NG +     PDV +Y  +  +L +   +++  +LFL M+  G  
Sbjct: 677 DLFAAH--------SANGLV-----PDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCS 723

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
            D  + +S++      G I  A      I+ +    + S+ + L+ S
Sbjct: 724 ADSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASFLLES 770


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 124/479 (25%), Positives = 207/479 (43%), Gaps = 98/479 (20%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ PD ++ N L++  CK   V ++     +++++   P++ T    I+GLC +G   EA
Sbjct: 211 GICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEA 270

Query: 177 SGLFTKFVAFDCRPNVI-------------------------------PNVICYASIIDG 205
           + L    V+    P+VI                               PN   Y +II+G
Sbjct: 271 ARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIING 330

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC--------CAVNWEDAKGNTSAA 257
            CK G +     +  D   +G  PD F Y+SLI   C         AV +E  +     +
Sbjct: 331 FCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHS 390

Query: 258 LELHEEFVNGNGELGVI--------------CHPDVLSYCSIINSLCKDVLVDKAKELFL 303
           + L+   V G  + G++              C PD+ +Y  ++N LCK   +  A  +  
Sbjct: 391 IILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILN 450

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
           D  ++G IPD+  +++LIDGYC    +D A ++  ++ S G  PD  +YNTL+N   K  
Sbjct: 451 DAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKAR 510

Query: 364 KVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLR 423
           K++  +  +  M+  G  P                      ++  +N L++  CK  ++ 
Sbjct: 511 KLDNVVDTFKAMLEKGCTP----------------------NIITYNILIESFCKDRKVS 548

Query: 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIR----------- 472
            A ELFK++   G  P++VT   +ICGLC  G ++KAY+L   +E++ +           
Sbjct: 549 EAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIM 608

Query: 473 ---ECLK-----AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
               C K     A +L HKM      PD  T  ++ +   K  N    ++L  +FL  N
Sbjct: 609 INAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGN----IDLAHTFLLEN 663



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 118/395 (29%), Positives = 186/395 (47%), Gaps = 31/395 (7%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           TP + S+N+L+         V   C   ++   G+ P+  + N ++N FCK   + +A  
Sbjct: 283 TPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADK 342

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
            L   + K F PD  T   LI GLC  G    A  +F + +          ++I Y +++
Sbjct: 343 ILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAM----EKGFKHSIILYNTLV 398

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
            GL K G V +   L  DM   G  PD + YN ++   C      DA G       L++ 
Sbjct: 399 KGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANG------ILNDA 452

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
              G       C PD+ ++ ++I+  CK   +DKA E+   M S GI PDV+ Y++L++G
Sbjct: 453 IAKG-------CIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNG 505

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            C   ++D+    F ++  +GC P+  +YN LI S+ K  KV EA+ L+ EM + G+ PD
Sbjct: 506 LCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPD 565

Query: 384 -------------NSCILEAAELFRTLHNT-KFELDLTVFNCLVDGLCKSWRLRSAWELF 429
                        N  + +A ELF T+    KF     +FN +++  C+   +  A +LF
Sbjct: 566 IVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLF 625

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            K+      P+  TY VMI   C  G I+ A+  L
Sbjct: 626 HKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFL 660



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 101/387 (26%), Positives = 176/387 (45%), Gaps = 60/387 (15%)

Query: 131 CFCKMIGVSDAFVALGRIL---RKVFSPDV---VTLGCLIRGLCMQGKFTEASGLFTKFV 184
           C  + +G+   F A+  +L   RK     +   V +G ++R    +GK  EA  +F +  
Sbjct: 45  CMIEKLGLHGKFEAMEDVLAEMRKNVDSKMLEGVYIG-IMRDYGRKGKVQEAVNVFERMD 103

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
            +DC P+V      Y +I++ L + G+ ++   +++ MK  GIYPD + +   ++ +C  
Sbjct: 104 FYDCEPSVQS----YNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCIT 159

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICH---------------------------- 276
                  G  +AAL L         E   + +                            
Sbjct: 160 -------GRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGI 212

Query: 277 -PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
            PD+L++  +I+ LCK   V ++++LF  +  RG+ P++  ++  I G C  G ID+A +
Sbjct: 213 CPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAAR 272

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCI---- 387
           L  SI SEG  PD  SYNTLI  + K  K+ EA     +M++ GV P+    N+ I    
Sbjct: 273 LLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFC 332

Query: 388 -----LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
                  A ++ R      F  D   ++ L++GLC    +  A  +F +    G + +++
Sbjct: 333 KAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSII 392

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEE 469
            Y  ++ GL  +G + +A  L+ DM E
Sbjct: 393 LYNTLVKGLSKQGLVLQALQLMKDMME 419



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 136/302 (45%), Gaps = 24/302 (7%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+DA    N  I     P + +FN+L+     ++     I + + + + G+ PD ++ N 
Sbjct: 442 LSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNT 501

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N  CK   + +       +L K  +P+++T   LI   C   K +EA  LF +     
Sbjct: 502 LLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKT-- 559

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYP-DAFVYNSLIRVYCCAVN 246
               + P+++   ++I GLC +G ++K   LF+ ++    +     ++N +I  +C    
Sbjct: 560 --RGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFC---- 613

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
               K N S A +L  +        G  C PD  +Y  +I+S CK   +D A    L+  
Sbjct: 614 ---EKLNVSMAEKLFHKMG------GSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENI 664

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           S+G++P       +++  C+  R+ +A  +   +   G +P+       +NS  + +K E
Sbjct: 665 SKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPEE------VNSIFEADKKE 718

Query: 367 EA 368
            A
Sbjct: 719 VA 720


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 135/507 (26%), Positives = 225/507 (44%), Gaps = 94/507 (18%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A+   N M+     P   ++NS+L            I   +++ + G+ P+ V+ + 
Sbjct: 252 MDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSS 311

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           LMN  CK    ++A      + ++   PD+ T   L++G   +G   E   L    V   
Sbjct: 312 LMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNG 371

Query: 188 CRP-----NVI--------------------------PNVICYASIIDGLCKDGFVNKVR 216
            +P     N++                          PNV+CY ++ID LCK G V+   
Sbjct: 372 IQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAM 431

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
           + F  M   G+ P+  VY SLI   C    W+ A+       EL  E ++       IC 
Sbjct: 432 LYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAE-------ELILEMLDRG-----IC- 478

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
            + + + SII+S CK+  V ++++LF  M   G+ PD++ Y++LIDG CL G++D+A KL
Sbjct: 479 LNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKL 538

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------- 383
             S+ S G  PD  +Y TLIN Y ++ ++++AL+L+ EM+S GV P+             
Sbjct: 539 LASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFH 598

Query: 384 -----------------------------------NSCILEAAELFRTLHNTKFELDLTV 408
                                              N+   EA  +F+ L  T  +L+   
Sbjct: 599 TRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRT 658

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           FN ++  L K  R+  A +LF      G  P+V TY++M   L  +G +E+  DL   ME
Sbjct: 659 FNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSME 718

Query: 469 EKIRECLKAIELLHKMAKRYVKPDEIT 495
           E    C     +L+ + ++ ++  +IT
Sbjct: 719 EN--GCSADSRMLNSIVRKLLQRGDIT 743



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/416 (27%), Positives = 198/416 (47%), Gaps = 67/416 (16%)

Query: 85  PFMPSFNSLLGAL----AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSD 140
           P + S+N++L          K Y  +  + +R    G+LPD V+ + ++   CK   +  
Sbjct: 199 PDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDR----GILPDVVTYSSIIAALCKAQAMDK 254

Query: 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200
           A   L  +++    PD +T   ++ G C  G+  EA G   K  +      V PNV+ Y+
Sbjct: 255 AMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRS----DGVEPNVVTYS 310

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL 260
           S+++ LCK+G   + R +F  M  RG+ PD   Y +L++ Y         KG   A +E+
Sbjct: 311 SLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYA-------TKG---ALVEM 360

Query: 261 HE--EFVNGNGELG-------VIC-----------------------HPDVLSYCSIINS 288
           H   + +  NG          +IC                       +P+V+ Y ++I+ 
Sbjct: 361 HALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDV 420

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           LCK   VD A   F  M   G+ P+++VY+SLI G C   + D A +L + +   G   +
Sbjct: 421 LCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLN 480

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------NSCIL-----EAAELFR 395
           T  +N++I+S+ K  +V E+  L+  M+ +GV+PD        + C L     EA +L  
Sbjct: 481 TIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLA 540

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
           ++ +   + D+  +  L++G C+  R+  A  LFK++   G  PN++TY +++ GL
Sbjct: 541 SMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGL 596



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 129/510 (25%), Positives = 217/510 (42%), Gaps = 106/510 (20%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142
           P   +  +N +  A AGK                 + P   +  IL+ C C+   +   F
Sbjct: 70  PAAAVSRYNRMARAGAGK-----------------VTPTVHTYAILIGCCCRAGRLDLGF 112

Query: 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL-FTKFVAFDCRPNVIPNVICYAS 201
            ALG +++K F  D +T   L++GLC   + ++A  +   +     C    IP+V  Y +
Sbjct: 113 AALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGC----IPDVFSYNN 168

Query: 202 IIDGLCKDGFVNKVRVLF---LDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL 258
           ++ GLC +    +   L     D +G G  PD   YN+++       N    +G++  A 
Sbjct: 169 LLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVL-------NGFFKEGDSDKAY 221

Query: 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS 318
             + E +    + G++  PDV++Y SII +LCK   +DKA E+   M   G++PD + Y+
Sbjct: 222 STYHEML----DRGIL--PDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYN 275

Query: 319 SLIDGYC-----------------------------LM------GRIDDARKLFVSIESE 343
           S++ GYC                             LM      GR  +ARK+F S+   
Sbjct: 276 SILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKR 335

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEA 390
           G  PD ++Y TL+  Y+    + E  +L   M+  G++PD+               + +A
Sbjct: 336 GLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQA 395

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
             +F  +       ++  +  ++D LCKS  +  A   F+++   G  PN++ YT +I G
Sbjct: 396 MLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHG 455

Query: 451 LCIEGGIEKAYDLLPDMEEKIRECLKAI-------------------ELLHKMAKRYVKP 491
           LC     +KA +L+ +M ++   CL  I                   +L   M +  VKP
Sbjct: 456 LCTCDKWDKAEELILEMLDR-GICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKP 514

Query: 492 DEITVSILEELLNKDENCHECMNLLPSFLS 521
           D IT + L +         E   LL S +S
Sbjct: 515 DIITYNTLIDGCCLAGKMDEATKLLASMVS 544



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 109/270 (40%), Gaps = 42/270 (15%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P V +Y  +I   C+   +D       ++  +G   D + ++ L+ G C   R  DA  +
Sbjct: 90  PTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDI 149

Query: 337 FVSIESE-GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS--MGVRPDNSCILEAAEL 393
            +   +E GCIPD  SYN L+       + +EAL L   M     G  P           
Sbjct: 150 VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPP---------- 199

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
                      D+  +N +++G  K      A+  + ++   G  P+VVTY+ +I  LC 
Sbjct: 200 -----------DVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCK 248

Query: 454 EGGIEKAYDLLPDMEEK--IRECL----------------KAIELLHKMAKRYVKPDEIT 495
              ++KA ++L  M +   + +C+                +AI  L KM    V+P+ +T
Sbjct: 249 AQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVT 308

Query: 496 VSILEELLNKDENCHECMNLLPSFLSRNQE 525
            S L   L K+    E   +  S   R  E
Sbjct: 309 YSSLMNYLCKNGRSTEARKIFDSMTKRGLE 338



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/287 (20%), Positives = 125/287 (43%), Gaps = 21/287 (7%)

Query: 74  FFNYMIHMQPTPFMPSFNSLLGA--LAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131
            F+ M+ +   P + ++N+L+    LAGK      +  S  + ++G+ PD V+   L+N 
Sbjct: 503 LFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLAS--MVSVGVKPDIVTYGTLING 560

Query: 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
           +C++  + DA      ++    SP+++T   +++GL    +   A  L+        +  
Sbjct: 561 YCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSIT----KSG 616

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
               +  Y  I+ GLCK+   ++   +F ++    +  +   +N +I         ++AK
Sbjct: 617 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAK 676

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
              +A         + NG +     PDV +Y  +  +L +   +++  +LFL M+  G  
Sbjct: 677 DLFAAH--------SANGLV-----PDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCS 723

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
            D  + +S++      G I  A      I+ +    + S+ + L+ S
Sbjct: 724 ADSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASFLLES 770


>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 570

 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 146/557 (26%), Positives = 244/557 (43%), Gaps = 101/557 (18%)

Query: 1   MPSSSPATSRTAFKVKPSSSLRNSKK-PI---SLNSENEPSSLHSNSVSTVEEK-TKLLK 55
           +P  +P  +RT       +S  NS+  PI   + N     SS+      T++ K T LLK
Sbjct: 10  LPLFNPHPNRT-------NSHSNSRTLPILNETTNINRTLSSVSKPQTHTLDFKDTHLLK 62

Query: 56  YLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNT 115
            LS + K+G    N++L F  ++++    P +     L+  L   K     I +   L  
Sbjct: 63  SLSRSCKAGN--FNESLYFLRHLVNKGHKPDVVLCTKLIHGLFTSKTIDKAIQVMHILEN 120

Query: 116 IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
            G  PD ++ N ++  FC+   +  A+  L R+  K FSPD+VT   LI  LC +G    
Sbjct: 121 HGH-PDLIAYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDS 179

Query: 176 ASGLFTKFVAFDCRPNVI-------------------------------PNVICYASIID 204
           A     + +  +C+P V+                               P++  Y SII 
Sbjct: 180 ALEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIR 239

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           G+C++G+V++   +   +  +G  PD   YN L+R       WE       A  EL  + 
Sbjct: 240 GMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWE-------AGYELMSDM 292

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           V         C  +V++Y  +I+S+C+D  V++   L  DMK +G+ PD   Y  LI   
Sbjct: 293 VARG------CEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAAL 346

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           C  GR+D A ++   + S+GC+PD  +YNT++    K ++ +EALS++ ++  +G  P+ 
Sbjct: 347 CKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNA 406

Query: 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
           S                       +N +   L  +     A  +  ++   G +P+ +TY
Sbjct: 407 SS----------------------YNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITY 444

Query: 445 TVMICGLCIEGGIEKAYDLLPDMEEKIRECL--------------------KAIELLHKM 484
             +I  LC +G +++A +LL DME +  EC                      AIE+L  M
Sbjct: 445 NSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAM 504

Query: 485 AKRYVKPDEITVSILEE 501
             +  +P+E T + L E
Sbjct: 505 VDKGCRPNETTYTFLIE 521



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 110/395 (27%), Positives = 170/395 (43%), Gaps = 32/395 (8%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           +P + ++N L+G+L  +    + +    +L      P  V+  IL+       G+ +A  
Sbjct: 158 SPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMK 217

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
            L  +L     PD+ T   +IRG+C +G    A  + +   +        P+VI Y  ++
Sbjct: 218 LLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISS----KGYAPDVITYNILL 273

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
            GL   G       L  DM  RG   +   Y+ LI   C      D K      L L + 
Sbjct: 274 RGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVC-----RDGKVEEGVGL-LKDM 327

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
              G         PD   Y  +I +LCK+  VD A E+   M S G +PD+V Y++++  
Sbjct: 328 KKKG-------LKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILAC 380

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            C   R D+A  +F  +   GC P+ SSYN++ ++         AL +  EM+  GV PD
Sbjct: 381 LCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPD 440

Query: 384 N-------SCIL------EAAELFRTLHNTKFELDLTV--FNCLVDGLCKSWRLRSAWEL 428
                   SC+       EA EL   +     E   +V  +N ++ GLCK  R+  A E+
Sbjct: 441 GITYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEV 500

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
              +   G  PN  TYT +I G+   G +  A DL
Sbjct: 501 LAAMVDKGCRPNETTYTFLIEGIGFGGCLNDARDL 535



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 169/394 (42%), Gaps = 63/394 (15%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+ AL F N ++     P + ++  L+ A   +      + L + +  I L PD  + N 
Sbjct: 177 LDSALEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNS 236

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++   C+   V  AF  +  I  K ++PDV+T   L+RGL  QGK+     L +  VA  
Sbjct: 237 IIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARG 296

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
           C  NV+                               P+  CY  +I  LCK+G V+   
Sbjct: 297 CEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAI 356

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA------------KGNTSAALELHEEF 264
            +   M   G  PD   YN+++   C     ++A              N S+   +    
Sbjct: 357 EVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSAL 416

Query: 265 VNGNGE---LGVICH-------PDVLSYCSIINSLCKDVLVDKAKELFLDMK--SRGIIP 312
            +   +   LG+I         PD ++Y S+I+ LC+D +VD+A EL +DM+  S    P
Sbjct: 417 WSTGHKVRALGMILEMLDKGVDPDGITYNSLISCLCRDGMVDEAIELLVDMEMESSECKP 476

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
            VV Y+ ++ G C + R+ DA ++  ++  +GC P+ ++Y  LI        + +A  L 
Sbjct: 477 SVVSYNIVLLGLCKVSRVSDAIEVLAAMVDKGCRPNETTYTFLIEGIGFGGCLNDARDLA 536

Query: 373 GEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406
             +++M    ++S        F  L+ T  +LD+
Sbjct: 537 TTLVNMDAISEHS--------FERLYKTFCKLDV 562



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 104/242 (42%), Gaps = 41/242 (16%)

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           ++G  PDVV+ + LI G      ID A ++   +E+ G  PD  +YN +I  + +  +++
Sbjct: 85  NKGHKPDVVLCTKLIHGLFTSKTIDKAIQVMHILENHGH-PDLIAYNAIITGFCRANRID 143

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
            A  +   M + G  P                      D+  +N L+  LC    L SA 
Sbjct: 144 SAYQVLDRMKNKGFSP----------------------DIVTYNILIGSLCSRGMLDSAL 181

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE----------------K 470
           E   +L +   +P VVTYT++I    ++GGI++A  LL +M E                 
Sbjct: 182 EFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGM 241

Query: 471 IRECL--KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESK 528
            RE    +A +++  ++ +   PD IT +IL   L           L+   ++R  E + 
Sbjct: 242 CREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANV 301

Query: 529 LT 530
           +T
Sbjct: 302 VT 303



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 76/183 (41%), Gaps = 31/183 (16%)

Query: 361 KIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLT 407
           K     E+L     +++ G +PD             +  I +A ++   L N     DL 
Sbjct: 69  KAGNFNESLYFLRHLVNKGHKPDVVLCTKLIHGLFTSKTIDKAIQVMHILENHGHP-DLI 127

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            +N ++ G C++ R+ SA+++  ++   G  P++VTY ++I  LC  G ++ A       
Sbjct: 128 AYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSA------- 180

Query: 468 EEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEES 527
                     +E  +++ K   KP  +T +IL E         E M LL   L  N +  
Sbjct: 181 ----------LEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPD 230

Query: 528 KLT 530
             T
Sbjct: 231 MFT 233


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 130/441 (29%), Positives = 205/441 (46%), Gaps = 57/441 (12%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A+     M+     P   ++NS++            I   +++++ G+ PD V+ N 
Sbjct: 250 MDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNS 309

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           LM+  CK    ++A      + ++   P++ T G L++G   +G   E  GL    V   
Sbjct: 310 LMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNG 369

Query: 188 CRPN-------------------------------VIPNVICYASIIDGLCKDGFVNKVR 216
             PN                               + P+ + Y ++I  LCK G V    
Sbjct: 370 IHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAM 429

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
             F  M    + P   VYNSLI   C    W+ AK       EL  E ++       IC 
Sbjct: 430 RYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK-------ELILEMLDRG-----IC- 476

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
            D + + SII+S CK+  V ++++LF  M   G+ PD++ YS+LIDGYCL G++D+A KL
Sbjct: 477 LDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKL 536

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCILE---- 389
             S+ S G  PD  +YNTLIN Y KI ++E+AL L+ EM S GV PD    + IL+    
Sbjct: 537 LASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQ 596

Query: 390 ------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                 A EL+  +  +  +L+L+ +N ++ GLCK+     A  +F+ L     +    T
Sbjct: 597 TRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRT 656

Query: 444 YTVMICGLCIEGGIEKAYDLL 464
           + +MI  L   G  ++A DL 
Sbjct: 657 FNIMIGALLKVGRNDEAKDLF 677



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 185/403 (45%), Gaps = 61/403 (15%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+LP+ V+ + ++   CK   +  A   L  +++    P+  T   ++ G C  G+  EA
Sbjct: 229 GILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEA 288

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
            G   K  +      V P+V+ Y S++D LCK+G   + R +F  M  RG+ P+   Y +
Sbjct: 289 IGFLKKMHS----DGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGT 344

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHE--EFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294
           L++ Y         KG   A +E+H   + +  NG      HP+   +  +I +  K   
Sbjct: 345 LLQGYA-------TKG---ALVEMHGLLDLMVRNG-----IHPNHYVFSILICAYAKQGK 389

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           VD+A  +F  M+ +G+ PD V Y ++I   C  GR++DA + F  +  E   P    YN+
Sbjct: 390 VDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNS 449

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           LI+S    +K ++A  L  EM+  G+     C                 LD   FN ++D
Sbjct: 450 LIHSLCIFDKWDKAKELILEMLDRGI-----C-----------------LDTIFFNSIID 487

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE----- 469
             CK  R+  + +LF  + R G +P+++TY+ +I G C+ G +++A  LL  M       
Sbjct: 488 SHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKP 547

Query: 470 -------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                        KI     A+ L  +M    V PD IT +I+
Sbjct: 548 DCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNII 590



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 170/384 (44%), Gaps = 66/384 (17%)

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP-----NVICYASIIDGLCK 208
           +P++ T G LI   C  G+           + F    NVI      + I +  ++ GLC 
Sbjct: 88  TPNLCTYGILIGSCCCAGRLD---------LGFAALGNVIKKGFRVDAIAFTPLLKGLCA 138

Query: 209 DGFV-NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
           D    + + ++   M   G  P+ F YN L++  C        +  +  ALEL +   + 
Sbjct: 139 DKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLC-------DENRSQEALELLQMMPDD 191

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
            G+    C PDV+SY ++IN   K+  +DKA   + +M  RGI+P+VV YSS+I   C  
Sbjct: 192 GGD----CPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKA 247

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
             +D A ++  S+   G +P+  +YN++++ Y    + +EA+    +M S GV P     
Sbjct: 248 QAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEP----- 302

Query: 388 LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
                            D+  +N L+D LCK+ R   A ++F  + + G +P + TY  +
Sbjct: 303 -----------------DVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTL 345

Query: 448 ICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYV 489
           + G   +G + + + LL  M                    K  +  +A+ +  KM ++ +
Sbjct: 346 LQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGL 405

Query: 490 KPDEITVSILEELLNKDENCHECM 513
            PD +T   +  +L K     + M
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAM 429



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 120/481 (24%), Positives = 201/481 (41%), Gaps = 71/481 (14%)

Query: 39  LHSNSVS-TVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGAL 97
           +HS+ V   V     L+ YL +N +  E     A   F+ M      P + ++ +LL   
Sbjct: 295 MHSDGVEPDVVTYNSLMDYLCKNGRCTE-----ARKMFDSMTKRGLKPEITTYGTLLQGY 349

Query: 98  AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDV 157
           A K   V    L + +   G+ P+    +IL+  + K   V  A +   ++ ++  +PD 
Sbjct: 350 ATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDT 409

Query: 158 VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRV 217
           VT G +I  LC  G+  +A   F + +  D R  + P  I Y S+I  LC     +K + 
Sbjct: 410 VTYGTVIGILCKSGRVEDAMRYFEQMI--DER--LSPGNIVYNSLIHSLCIFDKWDKAKE 465

Query: 218 LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277
           L L+M  RGI  D   +NS+I  +C        +G    + +L +  V     +GV   P
Sbjct: 466 LILEMLDRGICLDTIFFNSIIDSHC-------KEGRVIESEKLFDLMV----RIGV--KP 512

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           D+++Y ++I+  C    +D+A +L   M S G+ PD V Y++LI+GYC + R++DA  LF
Sbjct: 513 DIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLF 572

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------- 383
             +ES G  PD  +YN ++    +  +   A  LY  +   G + +              
Sbjct: 573 REMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKN 632

Query: 384 -----------NSCIL-----------------------EAAELFRTLHNTKFELDLTVF 409
                      N C+                        EA +LF  L       D+  +
Sbjct: 633 NLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTY 692

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           + + + L +   L    +LF  +   G   N      ++  L   G I +A   L  ++E
Sbjct: 693 SLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDE 752

Query: 470 K 470
           K
Sbjct: 753 K 753


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 132/462 (28%), Positives = 209/462 (45%), Gaps = 63/462 (13%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           KSGE++  +AL   +    M   P + ++N++L  L         + + +R       PD
Sbjct: 196 KSGEID--NALQVLD---RMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPD 250

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            ++  IL+   CK  GV  A   L  +  K   PDVVT   LI G+C +G+  EA     
Sbjct: 251 VITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLN 310

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
              ++ C+PNVI + I    I+  +C  G       L  DM  +G  P    +N LI   
Sbjct: 311 NMPSYGCQPNVITHNI----ILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFL 366

Query: 242 CCAVNWEDAKGNTSAALELHEEF-VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
           C        +G    A+++ E+  ++G       C P+ LSY  +++  CK+  +D+A E
Sbjct: 367 C-------RQGLLGRAIDILEKMPMHG-------CTPNSLSYNPLLHGFCKEKKMDRAIE 412

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
               M SRG  PD+V Y++L+   C  G++D A ++   + S+GC P   +YNT+I+  S
Sbjct: 413 YLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLS 472

Query: 361 KIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           K+ K E A+ L  EM   G++P                      D+  ++ LV GL +  
Sbjct: 473 KVGKTERAIKLLDEMRRKGLKP----------------------DIITYSSLVSGLSREG 510

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIEL 480
           ++  A + F  L   G  PN +TY  ++ GLC                 K R+  +AI+ 
Sbjct: 511 KVDEAIKFFHDLEGLGIRPNAITYNSIMLGLC-----------------KSRQTDRAIDF 553

Query: 481 LHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
           L  M  +  KP E T +IL E +  +    E ++LL    SR
Sbjct: 554 LAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSR 595



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 153/340 (45%), Gaps = 30/340 (8%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  +  A+   + M +    P + ++N L+  +  +      I     + + G  P+ ++
Sbjct: 264 ESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVIT 323

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            NI++   C      DA   L  +LRK  SP VVT   LI  LC QG    A  +  K  
Sbjct: 324 HNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMP 383

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD-MKGRGIYPDAFVYNSLIRVYC- 242
              C     PN + Y  ++ G CK+  +++  + +LD M  RG YPD   YN+L+   C 
Sbjct: 384 MHGC----TPNSLSYNPLLHGFCKEKKMDRA-IEYLDIMVSRGCYPDIVTYNTLLTALCK 438

Query: 243 -----CAV---NWEDAKGNTSAALELHEEFVNGNGELGVI--------------CHPDVL 280
                 AV   N   +KG  S  L  +   ++G  ++G                  PD++
Sbjct: 439 DGKVDVAVEILNQLSSKG-CSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDII 497

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
           +Y S+++ L ++  VD+A + F D++  GI P+ + Y+S++ G C   + D A      +
Sbjct: 498 TYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYM 557

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
            S+ C P  ++Y  LI   +     +EAL L  E+ S G+
Sbjct: 558 ISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGL 597



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 127/277 (45%), Gaps = 34/277 (12%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PD++   S+I   C+     KA  +   ++  G +PDV+ Y+ LI GYC  G ID+A ++
Sbjct: 147 PDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQV 206

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------- 383
              ++     PD  +YNT++ +     K+++A+ +    +     PD             
Sbjct: 207 ---LDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCK 263

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
            S + +A +L   + N   + D+  +N L++G+CK  RL  A +    +P YG +PNV+T
Sbjct: 264 ESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVIT 323

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEK----------------IRECL--KAIELLHKMA 485
           + +++  +C  G    A  LL DM  K                 R+ L  +AI++L KM 
Sbjct: 324 HNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMP 383

Query: 486 KRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
                P+ ++ + L     K++     +  L   +SR
Sbjct: 384 MHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSR 420



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 126/282 (44%), Gaps = 17/282 (6%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DA    + M+    +P + +FN L+  L  +      I + E++   G  P+ +S N L+
Sbjct: 339 DAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLL 398

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           + FCK   +  A   L  ++ +   PD+VT   L+  LC  GK   A  +  +  +  C 
Sbjct: 399 HGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCS 458

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
           P +I     Y ++IDGL K G   +   L  +M+ +G+ PD   Y+SL       V+   
Sbjct: 459 PVLIT----YNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSL-------VSGLS 507

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
            +G    A++   +        G+   P+ ++Y SI+  LCK    D+A +    M S+ 
Sbjct: 508 REGKVDEAIKFFHDLE------GLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKR 561

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
             P    Y+ LI+G    G   +A  L   + S G +  +S+
Sbjct: 562 CKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVKKSSA 603


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 120/411 (29%), Positives = 191/411 (46%), Gaps = 52/411 (12%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           A   F+ MI  +  P +  +  L+  L G+        +   +   G+LP+  + N +M+
Sbjct: 212 AFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMD 271

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
            +CK+  V  A      +L     P+VVT G LI GLC   +   A        +F    
Sbjct: 272 GYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASF---- 327

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
            V+PN+  Y  +IDG CK G +++   L  +++   I PD F Y+ LI+  C     E+A
Sbjct: 328 GVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEA 387

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
            G       L +E +   G L     P+ ++Y ++I+  CK+  ++KA E+   M  +GI
Sbjct: 388 DG-------LLQE-MKKKGFL-----PNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGI 434

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
            P+++ +S+LIDGYC  G+++ A  L+  +  +G +PD  +Y  LI+ + K    +EA  
Sbjct: 435 EPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFR 494

Query: 371 LYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF- 429
           L+ EM   G+ P                      ++   +CL+DGLCK  R+  A +LF 
Sbjct: 495 LHKEMQEAGLHP----------------------NVFTLSCLIDGLCKDGRISDAIKLFL 532

Query: 430 ------------KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
                        +L R    PN V YT +I GLC +G I KA     DM 
Sbjct: 533 AKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMR 583



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/409 (28%), Positives = 207/409 (50%), Gaps = 34/409 (8%)

Query: 75  FNYMIHMQPTPFMPS-FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
           FN +  ++ + F P+ F  L+ A +        + +  +++   +LP   + N++++   
Sbjct: 113 FNVLSRLESSKFTPNVFGVLIIAFSEMGLVEEALWVYYKMD---VLPAMQACNMVLDGLV 169

Query: 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
           K       +   G ++ +  SP+VVT G LI G C QG F +A  LF + +       + 
Sbjct: 170 KKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMI----EKKIF 225

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P V+ Y  +I GLC +  +++   +F  M+  G+ P+ + YN+++  YC          +
Sbjct: 226 PTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYC-------KIAH 278

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
              ALEL+ E + G+G L     P+V+++  +I+ LCK   +  A++  +DM S G++P+
Sbjct: 279 VKKALELYXEML-GDGLL-----PNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPN 332

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           + VY+ LIDGYC  G + +A  L   IE    +PD  +Y+ LI     ++++EEA  L  
Sbjct: 333 IFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQ 392

Query: 374 EMISMGVRP---------DNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           EM   G  P         D  C    + +A E+   +     E ++  F+ L+DG CK+ 
Sbjct: 393 EMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAG 452

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           ++ +A  L+ ++   G  P+VV YT +I G   +G  ++A+ L  +M+E
Sbjct: 453 KMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQE 501



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 175/376 (46%), Gaps = 62/376 (16%)

Query: 142 FVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYAS 201
           F  L R+    F+P+V   G LI      G   EA  ++ K        +V+P +     
Sbjct: 113 FNVLSRLESSKFTPNV--FGVLIIAFSEMGLVEEALWVYYKM-------DVLPAMQACNM 163

Query: 202 IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261
           ++DGL K G  + +  ++ DM  RG  P+   Y +LI   CC       +G+   A  L 
Sbjct: 164 VLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLID-GCCR------QGDFLKAFRLF 216

Query: 262 EEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
           +E +           P V+ Y  +I  LC +  + +A+ +F  M++ G++P++  Y++++
Sbjct: 217 DEMIEKK------IFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMM 270

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
           DGYC +  +  A +L+  +  +G +P+  ++  LI+   K +++  A     +M S GV 
Sbjct: 271 DGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVV 330

Query: 382 PDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
           P+                      + V+NCL+DG CK+  L  A  L  ++ ++   P+V
Sbjct: 331 PN----------------------IFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDV 368

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDMEEKI------------------RECLKAIELLHK 483
            TY+++I GLC    +E+A  LL +M++K                       KAIE+  +
Sbjct: 369 FTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQ 428

Query: 484 MAKRYVKPDEITVSIL 499
           M ++ ++P+ IT S L
Sbjct: 429 MTEKGIEPNIITFSTL 444



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 152/320 (47%), Gaps = 18/320 (5%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L++AL   + +   +  P + +++ L+  L G         L + +   G LP+ V+ N 
Sbjct: 349 LSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNT 408

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++ +CK   +  A     ++  K   P+++T   LI G C  GK   A GL+T+ V   
Sbjct: 409 LIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVI-- 466

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               ++P+V+ Y ++IDG  KDG   +   L  +M+  G++P+ F  + LI   C     
Sbjct: 467 --KGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLC----- 519

Query: 248 EDAKGNTSAALELHEEFVNGNG----ELG-VICHPDVLSYCSIINSLCKDVLVDKAKELF 302
           +D + + +  L L +   +  G    EL   +C P+ + Y ++I  LC D  + KA + F
Sbjct: 520 KDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFF 579

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
            DM+  G+ PDV     +I G+     + D   L   I   G IP++S Y  L   Y + 
Sbjct: 580 SDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEES 639

Query: 363 EKVEEALSLYGEMISMGVRP 382
             ++ ALS  GE    GV+P
Sbjct: 640 GYLKSALSFCGE----GVQP 655



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 150/332 (45%), Gaps = 30/332 (9%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E+  A  F   M      P +  +N L+            + L   +    +LPD  + +
Sbjct: 313 EMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYS 372

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           IL+   C +  + +A   L  + +K F P+ VT   LI G C +G   +A  + ++    
Sbjct: 373 ILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMT-- 430

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                + PN+I ++++IDG CK G +     L+ +M  +G+ PD   Y +LI  +     
Sbjct: 431 --EKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGH----- 483

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
           ++D  GNT  A  LH+E      E G+  HP+V +   +I+ LCKD  +  A +LFL   
Sbjct: 484 FKD--GNTKEAFRLHKEM----QEAGL--HPNVFTLSCLIDGLCKDGRISDAIKLFLAKT 535

Query: 307 SRGII-------------PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353
                             P+ V+Y++LI G C  GRI  A K F  +   G  PD  +  
Sbjct: 536 GTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCI 595

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
            +I  + +   + + + L  +++ MG+ P++S
Sbjct: 596 VIIQGHFRAMHLRDVMMLQADILKMGIIPNSS 627



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 96/211 (45%), Gaps = 39/211 (18%)

Query: 276 HPDVLSYCSIINSLCKDV-LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
            PD+++  ++  S C D+  +D  + +   ++ RG+  D+ + +SLI+ Y   G I  AR
Sbjct: 746 QPDIVT-VTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNNSLINMYSKCGEIGTAR 804

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNS 385
           +LF   + +    D +++ ++I  ++   + EEAL L+ EM     R          ++S
Sbjct: 805 RLFDGTQKK----DVTTWTSMIVGHALHGQAEEALQLFTEMKETNKRARKNKRNGEXESS 860

Query: 386 CIL--------------------EAAELFRTL-HNTKFELDLTVFNCLVDGLCKSWRLRS 424
            +L                    E  + FR++  +      ++ F C+VD LC++  L  
Sbjct: 861 LVLPNDVTFMGVLMACSHAGLVEEGKQHFRSMKEDYSLRPRISHFGCMVDLLCRAGLLTE 920

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
           A+E   K+P     PN V +  ++    ++G
Sbjct: 921 AYEFILKMP---VRPNAVVWRTLLGACSLQG 948


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 144/549 (26%), Positives = 231/549 (42%), Gaps = 110/549 (20%)

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           F  MI     P   ++N L+        +   + + E ++  GL PD  +   L+N  C 
Sbjct: 261 FQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCN 320

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP---- 190
                +A      ++RK   P+V   G LI G   +G  +E   L    V     P    
Sbjct: 321 NGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHI 380

Query: 191 -NVI--------------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
            N+I                          P+V+ Y ++ID LCK G V+   + F  M 
Sbjct: 381 FNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMM 440

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
             G+ P+ FV+NSL+   C    WE AK       E + E +N          PDV+ + 
Sbjct: 441 NEGVAPNIFVFNSLVYGLCTVDKWEKAK-------EFYFEMLNQG------IRPDVVFFN 487

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
           +I+ +LC    V KA+ L   M+  G  P V+ Y++LI G+CL+GRID+A K    + S 
Sbjct: 488 TILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSV 547

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP--------------------- 382
           G  PD  +YNTL++ Y +  ++++A  ++ EM+  G+ P                     
Sbjct: 548 GLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEA 607

Query: 383 ---------------------------DNSCILEAAELFRTLHNTKFELDLTVFNCLVDG 415
                                       N+C+ EA +LF++L +  F+L++T FN ++  
Sbjct: 608 KELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGA 667

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK----- 470
           L KS R   A  LF  +  YG  P+V TY ++   L  EG +E+  DL   ME+      
Sbjct: 668 LFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPN 727

Query: 471 -------IRECL------KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLP 517
                  +R  L      +A   L K+ ++    +  T ++L  LL++DE  H   +L  
Sbjct: 728 SRMLNALVRRLLHRGDITRAGAYLCKLDEKNFSLEASTTAMLISLLSRDEYHHHATSLPE 787

Query: 518 SFLSRNQEE 526
            +   N+ +
Sbjct: 788 KYRVLNEAK 796



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 144/562 (25%), Positives = 247/562 (43%), Gaps = 107/562 (19%)

Query: 41  SNSVSTVEEK-TKLLKYLSENSKSGEVELNDALCFFNYMI-HMQPTPFMPSFNSLLGALA 98
           S  VS V  +  +L + +   ++SG + L+DAL  F+ ++ H +P   + +FN LL A++
Sbjct: 2   SGRVSAVSNRCLELERVIGSRARSGSLGLDDALKLFDGLLTHARPASVI-AFNHLLTAVS 60

Query: 99  ---GKKYYVN----FICLSERLN---TIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
              G++         + L  R+    TI + PD  + +IL+ CFC+M  +   F   G I
Sbjct: 61  RVSGRRSSTTESELVVSLFNRMIRECTIKVTPDPCTYSILIGCFCRMGRLEHGFATFGLI 120

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV-AFDCRPNVI-------------- 193
           L+  +  + + +  L++GLC   +  EA  +  K +    C P+V+              
Sbjct: 121 LKSGWRVNNIVINQLLKGLCDAKRLCEAMDILVKRMPELGCTPDVVSYNTLLKGFCNEKR 180

Query: 194 --------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233
                               PNV+ YA +I+G   +G V+K   LFL+M  RGI P+   
Sbjct: 181 AEEALELLHMMADSQGRSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVT 240

Query: 234 YNSLIRVYCCAVNWEDAKGNTSAAL--------ELHEEFVNGNGELG-----------VI 274
           Y ++I   C A   + A+G     +        + +   ++G   +G           + 
Sbjct: 241 YTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMS 300

Query: 275 CH---PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
            H   PD  +Y S++N LC +    +A+ LF  M  +GI P+V +Y  LI GY   G + 
Sbjct: 301 AHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALS 360

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP--------- 382
           +   L   +   G  PD   +N +  +Y+K   ++EA+ ++ +M   G+ P         
Sbjct: 361 EMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALI 420

Query: 383 DNSCIL----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
           D  C L    +A   F  + N     ++ VFN LV GLC   +   A E + ++   G  
Sbjct: 421 DALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIR 480

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEE---------------------KIRECLKA 477
           P+VV +  ++C LC +G + KA  L+  ME                      +I E  K+
Sbjct: 481 PDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKS 540

Query: 478 IELLHKMAKRYVKPDEITVSIL 499
           ++++  +    +KPDE T + L
Sbjct: 541 LDVMLSVG---LKPDEWTYNTL 559



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 110/265 (41%), Gaps = 38/265 (14%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PD  +Y  +I   C+   ++     F  +   G   + +V + L+ G C   R+ +A  +
Sbjct: 92  PDPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLCEAMDI 151

Query: 337 FVSIESE-GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395
            V    E GC PD  SYNTL+  +   ++ EEAL L   M     R   SC         
Sbjct: 152 LVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGR---SC--------- 199

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
                    ++  +  +++G     ++  A+ LF ++   G +PNVVTYT +I GLC   
Sbjct: 200 -------PPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQ 252

Query: 456 GIEKAYDLLPDMEEK------------------IRECLKAIELLHKMAKRYVKPDEITVS 497
            +++A  +   M +K                  I +  + + +L +M+   +KPD  T  
Sbjct: 253 VVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYG 312

Query: 498 ILEELLNKDENCHECMNLLPSFLSR 522
            L   L  +  C E   L  S + +
Sbjct: 313 SLLNYLCNNGRCREARFLFDSMIRK 337


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/354 (31%), Positives = 179/354 (50%), Gaps = 39/354 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  PD V+ N L+N FC++  V+DA   +  ++ K F PDV T   LI G+C  G+F +A
Sbjct: 258 GFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKA 317

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             +  + +  +C PN +     Y ++I  LCK+  +     L   +  +G+ PD   +N+
Sbjct: 318 IEILQQMILRECSPNTV----TYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNT 373

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI+  C + N +        A+E+ EE  N        C PD  +Y  +I+SLC +  + 
Sbjct: 374 LIQGLCLSKNQD-------IAMEMFEEMKNKG------CKPDEFTYSILIDSLCYERRLK 420

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A  L  +M+S G   + VVY++LIDG C   RI+DA ++F  +E  G    + +YNTLI
Sbjct: 421 EALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLI 480

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           +   K ++VEEA  L  +MI  G++PD                 KF      +N L+   
Sbjct: 481 DGLCKNKRVEEASQLMDQMIMEGLKPD-----------------KF-----TYNSLLTYF 518

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           C+   +  A ++ + +   G EP++ TY  +I GLC  G ++ A  LL  ++ K
Sbjct: 519 CRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMK 572



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 113/475 (23%), Positives = 208/475 (43%), Gaps = 50/475 (10%)

Query: 87  MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALG 146
           +P   +LL  L     + +   L ++L + G +P+  +   L+  F     + +    L 
Sbjct: 55  LPPNETLLLQLTQSSSFDSITTLLKQLKSSGSIPNATTFATLIQSFTNFHEIENLLKILE 114

Query: 147 RILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGL 206
             L   F PD       +  L    K      L +K V       ++ +V  +  +I  L
Sbjct: 115 NELG--FKPDTNFYNIALNALVEDNKLKLVEMLHSKMV----NEGIVLDVSTFNVLIKAL 168

Query: 207 CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266
           CK   +    ++  +M   G+ PD   + +L++ +         +G+ + AL++ ++   
Sbjct: 169 CKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFI-------EEGDLNGALKMKKQM-- 219

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
               LG  C    +S   ++N  CK+  V++A    L++   G  PD V ++SL++G+C 
Sbjct: 220 ----LGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCR 275

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--- 383
           +G ++DA  +   +  +G  PD  +YN+LI+   K+ + E+A+ +  +MI     P+   
Sbjct: 276 IGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVT 335

Query: 384 -NSCI--------LEAA-ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
            N+ I        +EAA +L R L +     D+  FN L+ GLC S     A E+F+++ 
Sbjct: 336 YNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMK 395

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECL 475
             G +P+  TY+++I  LC E  +++A  LL +ME                   K R   
Sbjct: 396 NKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIE 455

Query: 476 KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
            A E+  +M    V    +T + L + L K++   E   L+   +    +  K T
Sbjct: 456 DAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFT 510



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/390 (26%), Positives = 174/390 (44%), Gaps = 48/390 (12%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +NDAL   ++MI     P + ++NSL+  +     +   I + +++      P+ V+ N 
Sbjct: 279 VNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNT 338

Query: 128 LMNCFCKMIGVSDAFVALGRIL-RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           L++  CK   + +A   L RIL  K   PDV T   LI+GLC+      A  +F +    
Sbjct: 339 LISALCKENEI-EAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNK 397

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C+P+       Y+ +ID LC +  + +  +L  +M+  G   +A VYN+LI   C +  
Sbjct: 398 GCKPDEF----TYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRR 453

Query: 247 WEDAKG--NTSAALELHEEFVNGNGELGVICH--------------------PDVLSYCS 284
            EDA+   +    L +    V  N  +  +C                     PD  +Y S
Sbjct: 454 IEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNS 513

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           ++   C+   ++KA ++   M S G  PD+  Y +LI G C  GR+D A KL  S++ +G
Sbjct: 514 LLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKG 573

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN----T 400
            +    +YN +I +    ++ +E + L+ EM+     PD    L    +FR L N     
Sbjct: 574 IVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSDPPD---ALTHKIVFRGLCNGGGPI 630

Query: 401 KFELDLTV-------------FNCLVDGLC 417
           +  +D TV             F  L +GLC
Sbjct: 631 QEAIDFTVEMLEKGILPEFPSFGFLAEGLC 660



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/288 (20%), Positives = 124/288 (43%), Gaps = 20/288 (6%)

Query: 90  FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149
           +N+L+  L   +   +   + +++  +G+    V+ N L++  CK   V +A   + +++
Sbjct: 441 YNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMI 500

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD 209
            +   PD  T   L+   C  G   +A  +     +  C P++      Y ++I GLC+ 
Sbjct: 501 MEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIF----TYGTLIGGLCRA 556

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
           G V+    L   ++ +GI      YN +I+           +  T   + L  E +  + 
Sbjct: 557 GRVDVASKLLRSVQMKGIVLTPHAYNPVIQALF-------MRKRTKEGMRLFREMMEKSD 609

Query: 270 ELGVICHPDVLSYCSIINSLCKDV-LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                  PD L++  +   LC     + +A +  ++M  +GI+P+   +  L +G C + 
Sbjct: 610 P------PDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEKGILPEFPSFGFLAEGLCSLS 663

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
             D   +L   +  +  + +  +  ++I  + KI K  +AL+  G ++
Sbjct: 664 MEDTLIELINMVMEKAQMSERET--SMIRGFLKIRKFNDALANLGGIL 709


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 148/589 (25%), Positives = 247/589 (41%), Gaps = 120/589 (20%)

Query: 4   SSPATSRTAFKVKPSSSLRNSKKPISLNSENEPSSL-------------HSNS------- 43
           S   T   + KV   S  RN    +S  S+ E S L             HSNS       
Sbjct: 33  SGRTTRSISSKVPLWSRKRNRLVLVSAASQVESSGLNGRAQKFDTLASGHSNSNGNGHFS 92

Query: 44  ---VSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGK 100
               S V E  +   +L +  ++GE+E  +   F   M++    P +    +L+      
Sbjct: 93  SANSSFVLEDVESNNHLRQLVRTGELE--EGFKFLENMVYHGNVPDIIPCTTLIRGFCRM 150

Query: 101 KYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTL 160
                   + E L   G +PD ++ N++++ +CK   +++A   L R+     SPDVVT 
Sbjct: 151 GKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTY 207

Query: 161 GCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI--------------------------- 193
             ++R LC  GK  +A  +  + +  DC P+VI                           
Sbjct: 208 NTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRD 267

Query: 194 ----PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
               P+V+ Y  +++G+CK+G +++      DM   G  P+   +N ++R  C    W D
Sbjct: 268 RGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMD 327

Query: 250 A---------KGNTSAALELH--EEFVNGNGELGVI-----------CHPDVLSYCSIIN 287
           A         KG + + +  +    F+   G LG             C P+ LSY  +++
Sbjct: 328 AEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLH 387

Query: 288 SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
             CK+  +D+A E    M SRG  PD+V Y++++   C  G+++DA ++   + S+GC P
Sbjct: 388 GFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSP 447

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLT 407
              +YNT+I+  +K  K  +A+ L  EM +  ++PD                        
Sbjct: 448 VLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDT----------------------I 485

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            ++ LV GL +  ++  A + F +  R G  PN VT+  ++ GLC               
Sbjct: 486 TYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLC--------------- 530

Query: 468 EEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
             K R+  +AI+ L  M  R  KP E + +IL E L  +    E + LL
Sbjct: 531 --KTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELL 577



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 179/396 (45%), Gaps = 51/396 (12%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
           PD++    LIRG C  GK  +A+ +             +P+VI Y  +I G CK G +N 
Sbjct: 135 PDIIPCTTLIRGFCRMGKTRKAAKILEVLEG----SGAVPDVITYNVMISGYCKAGEINN 190

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
              +   M    + PD   YN+++R  C         G    A+E+ +  +  +      
Sbjct: 191 ALSVLDRMS---VSPDVVTYNTILRSLC-------DSGKLKQAMEVLDRMLQRD------ 234

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
           C+PDV++Y  +I + C+D  V +A +L  +M+ RG  PDVV Y+ L++G C  GR+D+A 
Sbjct: 235 CYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAI 294

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----------- 383
           K    + S GC P+  ++N ++ S     +  +A  L  +M+  G  P            
Sbjct: 295 KFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFL 354

Query: 384 --NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
                +  A ++   +     + +   +N L+ G CK  ++  A E  +++   G  P++
Sbjct: 355 CRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDI 414

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHK 483
           VTY  M+  LC +G +E A ++L  +                    K  +  KAI+LL +
Sbjct: 415 VTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDE 474

Query: 484 MAKRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519
           M  + +KPD IT S L   L+++    E +     F
Sbjct: 475 MRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEF 510



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 150/354 (42%), Gaps = 38/354 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +  A+   + M     TP + ++N L+  +  +      I     + + G  P+ ++ NI
Sbjct: 255 VGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNI 314

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++   C      DA   L  +LRK FSP VVT   LI  LC +G    A  +  K     
Sbjct: 315 ILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHG 374

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C+PN +     Y  ++ G CK+  +++       M  RG YPD   YN+++   C     
Sbjct: 375 CQPNSLS----YNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKV 430

Query: 248 EDA----------------------------KGNTSAALELHEEFVNGNGELGVICHPDV 279
           EDA                             G T  A++L +E    +        PD 
Sbjct: 431 EDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKD------LKPDT 484

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           ++Y S++  L ++  VD+A + F + +  G+ P+ V ++S++ G C   + D A    V 
Sbjct: 485 ITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVY 544

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAEL 393
           + + GC P  +SY  LI   +     +EAL L  E+ + G+   +S    A ++
Sbjct: 545 MINRGCKPTETSYTILIEGLAYEGMAKEALELLNELCNKGLMKRSSAEQVAGKM 598



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 133/326 (40%), Gaps = 72/326 (22%)

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL---DMKSRGIIPDVVVYSSLID 322
           NGNG         VL      N L + V   + +E F    +M   G +PD++  ++LI 
Sbjct: 86  NGNGHFSSANSSFVLEDVESNNHLRQLVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIR 145

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
           G+C MG+   A K+   +E  G +PD  +YN +I+ Y K  ++  ALS+   +  M V P
Sbjct: 146 GFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSV---LDRMSVSP 202

Query: 383 D------------------------------------------------NSCILEAAELF 394
           D                                                +S + +A +L 
Sbjct: 203 DVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLL 262

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
             + +     D+  +N LV+G+CK  RL  A +    +P  G +PNV+T+ +++  +C  
Sbjct: 263 DEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCST 322

Query: 455 GGIEKAYDLLPDMEEK----------------IRECL--KAIELLHKMAKRYVKPDEITV 496
           G    A  LL DM  K                 R+ L  +AI++L KM K   +P+ ++ 
Sbjct: 323 GRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSY 382

Query: 497 SILEELLNKDENCHECMNLLPSFLSR 522
           + L     K++     +  L   +SR
Sbjct: 383 NPLLHGFCKEKKMDRAIEYLERMVSR 408


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 123/403 (30%), Positives = 181/403 (44%), Gaps = 66/403 (16%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  PD V+ N L+N  C+   +      +  +L K F  DV T   LI GLC  G+  EA
Sbjct: 297 GFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEA 356

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             +    V+ DC PN +     Y ++I  LCK+  V     L   +  +G+ PD   +NS
Sbjct: 357 VEILHHMVSRDCEPNTV----TYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNS 412

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI+  C   N E        A+EL EE           C PD  +Y  +I SLC +  + 
Sbjct: 413 LIQGLCLTSNRE-------IAMELFEEMKEKG------CDPDEFTYSILIESLCSERRLK 459

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A  L  +M+  G   +VVVY++LIDG C   R+ DA  +F  +E  G    + +YNTLI
Sbjct: 460 EALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLI 519

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD-----------------------------NSC- 386
           N   K ++VEEA  L  +MI  G++PD                             N C 
Sbjct: 520 NGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCE 579

Query: 387 ------------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
                             +  A++L R++      L    +N ++  LCK  R + A  L
Sbjct: 580 PDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRL 639

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGG-IEKAYDLLPDMEEK 470
           F+++   G  P+V+TY ++  GLC  GG I++A D   +M EK
Sbjct: 640 FREMMEKGDPPDVITYKIVFRGLCNGGGPIQEAVDFTVEMLEK 682



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 109/396 (27%), Positives = 188/396 (47%), Gaps = 32/396 (8%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + +FN L+ AL         I + E +   GL PD  +   LM  F +   V  A   
Sbjct: 197 PDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRI 256

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
              ++        V++  L+ GLC +G+  EA     +   F       P+ + + ++++
Sbjct: 257 KELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFIYEEEGF------CPDQVTFNALVN 310

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           GLC+ G + +   +   M  +G   D + YNSLI   C         G    A+E+    
Sbjct: 311 GLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLC-------KLGEIDEAVEILHHM 363

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           V+ +      C P+ ++Y ++I +LCK+  V+ A EL   + S+G++PDV  ++SLI G 
Sbjct: 364 VSRD------CEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGL 417

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD- 383
           CL    + A +LF  ++ +GC PD  +Y+ LI S     +++EAL L  EM   G   + 
Sbjct: 418 CLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNV 477

Query: 384 ------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
                       N+ + +A ++F  +           +N L++GLCKS R+  A +L  +
Sbjct: 478 VVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQ 537

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +   G +P+  TYT M+   C +G I++A D++ +M
Sbjct: 538 MIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNM 573



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 167/368 (45%), Gaps = 37/368 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E+++A+   ++M+     P   ++N+L+G L  + +      L+  L + G+LPD  + N
Sbjct: 352 EIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFN 411

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+   C       A      +  K   PD  T   LI  LC + +  EA  L  +    
Sbjct: 412 SLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELS 471

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C      NV+ Y ++IDGLCK+  V     +F  M+  G+   +  YN+LI   C +  
Sbjct: 472 GC----ARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKR 527

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            E+A      A  + +  + G         PD  +Y +++   C+   + +A ++  +M 
Sbjct: 528 VEEA------AQLMDQMIMEG-------LKPDKFTYTTMLKYFCQQGDIKRAADIVQNMT 574

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
             G  PD+V Y +LI G C  GR+D A KL  S++ +G +    +YN +I +  K ++ +
Sbjct: 575 LNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTK 634

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHN----TKFELDLTV-------------F 409
           EA+ L+ EM+  G  PD   ++    +FR L N     +  +D TV             F
Sbjct: 635 EAMRLFREMMEKGDPPD---VITYKIVFRGLCNGGGPIQEAVDFTVEMLEKGILPEFPSF 691

Query: 410 NCLVDGLC 417
             L +GLC
Sbjct: 692 GFLAEGLC 699



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 122/485 (25%), Positives = 200/485 (41%), Gaps = 58/485 (11%)

Query: 69  NDALCFFNYMIHMQPTPFMPS-FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           + AL  F +          PS F+ LL  LA    + + + L  ++++  +  D  +  I
Sbjct: 73  SSALSLFQWASAQPNYSAHPSVFHELLRQLARAGSFDSMLTLLRQMHSSKIPVDESTFLI 132

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFS--PDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
            +  +     +      L  ++ + F+  PD       +  L    K      L +K VA
Sbjct: 133 FLETYATSHHLHAEINPLFLLMERDFAVKPDTRFYNVALSLLVKANKLKLVETLHSKMVA 192

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
            D  P   P+V  +  +I  LCK   +    ++  DM   G+ PD   + +L++ +    
Sbjct: 193 -DAVP---PDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEA 248

Query: 246 NWEDAKGNTSAALELHEE--------FVNGNGELGVICH------------PDVLSYCSI 285
           + E A       +E   E         VNG  + G I              PD +++ ++
Sbjct: 249 DVEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFIYEEEGFCPDQVTFNAL 308

Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
           +N LC+   + +  E+   M  +G   DV  Y+SLI G C +G ID+A ++   + S  C
Sbjct: 309 VNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDC 368

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCILE---------AAE 392
            P+T +YNTLI +  K   VE A  L   + S GV PD    NS I           A E
Sbjct: 369 EPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAME 428

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
           LF  +     + D   ++ L++ LC   RL+ A  L K++   G   NVV Y  +I GLC
Sbjct: 429 LFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLC 488

Query: 453 IEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEI 494
               +  A D+   ME                   K +   +A +L+ +M    +KPD+ 
Sbjct: 489 KNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKF 548

Query: 495 TVSIL 499
           T + +
Sbjct: 549 TYTTM 553



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 122/271 (45%), Gaps = 33/271 (12%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PDV ++  +I +LCK   +  A  +  DM + G+ PD   +++L+ G+     ++ A ++
Sbjct: 197 PDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRI 256

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN------------ 384
              +   GC   + S N L+N   K  ++EEAL    E    G  PD             
Sbjct: 257 KELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFIYE--EEGFCPDQVTFNALVNGLCR 314

Query: 385 -SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
              I +  E+   +    FELD+  +N L+ GLCK   +  A E+   +     EPN VT
Sbjct: 315 TGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVT 374

Query: 444 YTVMICGLCIEGGIEKAYDL---------LPDM---EEKIRE-CLK-----AIELLHKMA 485
           Y  +I  LC E  +E A +L         LPD+      I+  CL      A+EL  +M 
Sbjct: 375 YNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMK 434

Query: 486 KRYVKPDEITVSILEELLNKDENCHECMNLL 516
           ++   PDE T SIL E L  +    E + LL
Sbjct: 435 EKGCDPDEFTYSILIESLCSERRLKEALMLL 465



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 130/290 (44%), Gaps = 24/290 (8%)

Query: 90  FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149
           +N+L+  L       +   + +++  +G+    V+ N L+N  CK   V +A   + +++
Sbjct: 480 YNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMI 539

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD 209
            +   PD  T   +++  C QG    A+ +        C P+++     Y ++I GLCK 
Sbjct: 540 MEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIV----TYGTLIGGLCKA 595

Query: 210 GFVNKVRVLF--LDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
           G V+    L   + MKG  + P A  YN +I+  C        +  T  A+ L  E +  
Sbjct: 596 GRVDVASKLLRSVQMKGMVLTPQA--YNPVIQALC-------KRKRTKEAMRLFREMMEK 646

Query: 268 NGELGVICHPDVLSYCSIINSLCKDV-LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
                    PDV++Y  +   LC     + +A +  ++M  +GI+P+   +  L +G C 
Sbjct: 647 GDP------PDVITYKIVFRGLCNGGGPIQEAVDFTVEMLEKGILPEFPSFGFLAEGLCS 700

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
           +   D   +L   +  +G    + S  ++I  + KI+K  +AL+  G ++
Sbjct: 701 LSMEDTLIQLINMVMEKGRF--SQSETSIIRGFLKIQKFNDALANLGAIL 748


>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 543

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/399 (28%), Positives = 196/399 (49%), Gaps = 36/399 (9%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DAL  F+ M+H   +P + +++ LL A   +  Y   + L + + + G  PD V+ N+L+
Sbjct: 178 DALAVFDDMLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLI 237

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           N  C    V +A   L  +      PD VT   +++ LC   ++ EA  L TK  + DC 
Sbjct: 238 NAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCA 297

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
           P+ +     + ++I  LC+ GFV +   +   M   G  PD   Y+S++   C     ++
Sbjct: 298 PDEVT----FNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDE 353

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
           A        EL  E V+ N      C PD +++ +II SLC+  L D+A ++  +M   G
Sbjct: 354 A---IKLLKELLAEMVSKN------CIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHG 404

Query: 310 IIPDVVVYSSLIDGY-CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
            IPD+  Y+ ++DG+ C   + ++A  L   + S G  PDT++Y +L    S+ +++E A
Sbjct: 405 CIPDITTYNCIVDGFLCKSCKTEEALDLLNLMVSNGLCPDTTTYKSLAFGLSREDEMERA 464

Query: 369 LSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
           + ++  + +MG+ PD                        ++N ++ GLCK WR   A + 
Sbjct: 465 IGMFRRVQAMGLSPDK----------------------MLYNAILLGLCKKWRTDLAIDF 502

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           F  +   G  P+  TY +++ G+  EG +E+A +LL ++
Sbjct: 503 FAYMVSNGCMPDESTYIILVEGIAYEGFLEEAKELLGNL 541



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 160/352 (45%), Gaps = 59/352 (16%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
           P V+    LI+ LC  G+  +A  +          P+    +I Y ++++G C+ G ++ 
Sbjct: 94  PAVIPCNILIKKLCADGRVADAERVVEAL-----GPSA--TIITYNTMVNGYCRAGNIDA 146

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
            R +   +      PD F YN LIR  C        +G    AL + ++ ++        
Sbjct: 147 ARRMIDSVP---FAPDTFTYNPLIRALC-------VRGCVLDALAVFDDMLHRG------ 190

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
           C P V++Y  ++++ CK+    +A  L  +M+S+G  PD+V Y+ LI+  C  G + +A 
Sbjct: 191 CSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEAL 250

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
           K+  S+ S GC PD  +Y  ++ S    E+ EEA  L  +M S    PD           
Sbjct: 251 KVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDE---------- 300

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
                         FN ++  LC+   +  A ++  ++  +G  P+++TY+ ++ GLC E
Sbjct: 301 ------------VTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKE 348

Query: 455 GGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITV-SILEELLNK 505
             +++A  LL              ELL +M  +   PD++T  +I+  L  K
Sbjct: 349 RRVDEAIKLLK-------------ELLAEMVSKNCIPDQVTFNTIITSLCQK 387



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 149/316 (47%), Gaps = 12/316 (3%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N+   + ++ +AL   N +      P   ++  +L +L   + +     L  ++ +    
Sbjct: 238 NAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCA 297

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V+ N ++   C+   V  A   L ++     +PD++T   ++ GLC + +  EA  L
Sbjct: 298 PDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKL 357

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             + +A     N IP+ + + +II  LC+ G  ++   +  +M   G  PD   YN ++ 
Sbjct: 358 LKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVD 417

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            + C          T  AL+L    V+ NG    +C PD  +Y S+   L ++  +++A 
Sbjct: 418 GFLC------KSCKTEEALDLLNLMVS-NG----LC-PDTTTYKSLAFGLSREDEMERAI 465

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            +F  +++ G+ PD ++Y++++ G C   R D A   F  + S GC+PD S+Y  L+   
Sbjct: 466 GMFRRVQAMGLSPDKMLYNAILLGLCKKWRTDLAIDFFAYMVSNGCMPDESTYIILVEGI 525

Query: 360 SKIEKVEEALSLYGEM 375
           +    +EEA  L G +
Sbjct: 526 AYEGFLEEAKELLGNL 541


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 136/506 (26%), Positives = 228/506 (45%), Gaps = 53/506 (10%)

Query: 53  LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSER 112
           LL YL +N +  E        FF+ MI     P + ++  +L   A K        L   
Sbjct: 314 LLNYLCKNGRCREARF-----FFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNL 368

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +   G+ P+    NI  + + K   +  A     ++ ++  SPD V+ G LI  LC  G+
Sbjct: 369 MVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGR 428

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
             +A   F + +       V P+++ ++S++ GLC      KV  LF +M   GI+P+  
Sbjct: 429 VDDAEVKFNQMI----NEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIV 484

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            +N+++   C        +G         +  V+    +GV   PDV+SY ++I+  C  
Sbjct: 485 FFNTILCNLC-------KEGRVMEG----QRLVDSIECMGV--RPDVISYNTLIDGHCLA 531

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             +D+A +L   M S G+ PD   Y++L+ GYC  GRID A   F  + S G  P   +Y
Sbjct: 532 GTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTY 591

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHN 399
           NT+++   + ++  EA  LY  MI+ G + D             ++C+ EA ++F+ L +
Sbjct: 592 NTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCS 651

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
              +L++  FN ++  L K  R   A +LF  +P  G   NVVTY +++  L  EG +E+
Sbjct: 652 KGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNVVTYRLVVENLIEEGSLEE 711

Query: 460 AYDLLPDMEEK------------IRECL------KAIELLHKMAKRYVKPDEITVSILEE 501
              L   ME+             +R  L      +A   L K+ +R    +  T S+L  
Sbjct: 712 FDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSMLIS 771

Query: 502 LLNKDENCHECMNLLPSFLSRNQEES 527
           + + DE  H   +L   +   N+  S
Sbjct: 772 IFSSDEYQHHAKSLPKKYRILNEANS 797



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 124/441 (28%), Positives = 204/441 (46%), Gaps = 57/441 (12%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
            + A   F  MI     P + ++N L+        +   + + E ++  G  P+  +   
Sbjct: 254 FDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGS 313

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N  CK     +A      ++ K   P V T G ++ G   +G  +E   L    VA  
Sbjct: 314 LLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANG 373

Query: 188 CRPN-------------------------------VIPNVICYASIIDGLCKDGFVNKVR 216
             PN                               + P+ + Y ++ID LCK G V+   
Sbjct: 374 ISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAE 433

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
           V F  M   G+ PD  V++SL+   C    WE  +       EL  E +N      V  H
Sbjct: 434 VKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVE-------ELFFEMLN------VGIH 480

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+++ + +I+ +LCK+  V + + L   ++  G+ PDV+ Y++LIDG+CL G ID+A KL
Sbjct: 481 PNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKL 540

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCIL----- 388
              + S G  PD+ SYNTL++ Y K  +++ A S + +M+S G+ P     + IL     
Sbjct: 541 LEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQ 600

Query: 389 -----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                EA EL+  + N+  + D+  +N +++GLCKS  +  A ++F+ L   G + N++T
Sbjct: 601 TKRFSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIIT 660

Query: 444 YTVMICGLCIEGGIEKAYDLL 464
           + +MI  L   G  E A DL 
Sbjct: 661 FNIMIGALLKGGRKEDAMDLF 681



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 128/516 (24%), Positives = 228/516 (44%), Gaps = 95/516 (18%)

Query: 41  SNSVSTVEEK-TKLLKYLSENSKSGEVELNDALCFFNYMI-HMQPTPFMPSFNSLLGALA 98
           S  VS V ++  +L + +++ ++SG + L DAL  F+ ++ H +P   + +FN LL A++
Sbjct: 2   SRRVSAVRDRCLELERVIADRARSGSLGLGDALKLFDELLPHARPASVV-AFNHLLAAVS 60

Query: 99  ---GKKYYVN----FICLSERLNT---IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
              G++   +     + L  R+     I + P+  + +IL+ CFC+M  +   F A G I
Sbjct: 61  RSSGRRSTTSESETVVSLFNRMVRDCYIKVAPNRCTYSILIGCFCRMGHLEHGFAAFGLI 120

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASG-LFTKFVAFDCRPNVI-------------- 193
           L+  +  D + +  L+ GLC   +  EA   L  +     C P+ +              
Sbjct: 121 LKTGWRMDHIVINQLLNGLCDGKRVGEAMDVLLQRMPELGCMPDTVSYNILLKGLCNEKR 180

Query: 194 --------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233
                               PNV+ Y+++I+G   +G V+K   LFL+M  RGI PD   
Sbjct: 181 AEEALELLHMMADDQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVT 240

Query: 234 YNSLIRVYCCAVNWEDAK----------------------------GNTSAALELHEEFV 265
           Y ++I   C A  ++ A+                            G     + + EE  
Sbjct: 241 YTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMS 300

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
            G  +      P+  +Y S++N LCK+    +A+  F  M  +GI P V  Y  ++ GY 
Sbjct: 301 AGGPK------PNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYA 354

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN- 384
             G + +   L   + + G  P+   +N   ++Y+K   +++A+ ++ +M   G+ PD  
Sbjct: 355 TKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAV 414

Query: 385 --SCILEA---------AEL-FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
               +++A         AE+ F  + N     D+ VF+ LV GLC   +     ELF ++
Sbjct: 415 SYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEM 474

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
              G  PN+V +  ++C LC EG + +   L+  +E
Sbjct: 475 LNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIE 510



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 114/499 (22%), Positives = 210/499 (42%), Gaps = 61/499 (12%)

Query: 62   KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
            K+G ++   A   F  M+    TP + ++N++L  L   K +     L   +   G   D
Sbjct: 565  KAGRID--SAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWD 622

Query: 122  FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
              + NI++N  CK   V +A      +  K    +++T   +I  L   G+  +A  LF 
Sbjct: 623  IYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFA 682

Query: 182  KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR-- 239
               A      ++ NV+ Y  +++ L ++G + +   LF  M+  G  P++ + N+L+R  
Sbjct: 683  AIPA----NGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRL 738

Query: 240  ----------VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS- 288
                       Y   ++  +     S    L   F +   +      P      +  NS 
Sbjct: 739  LHRGDISRAGAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANSS 798

Query: 289  --LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
              + K   +D A  LF +M  +G+ PDVV Y++++ G    GR  +A++L++S+ +    
Sbjct: 799  ALIKKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQ 858

Query: 347  PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406
             +  +YN ++N   K                      ++C+ EA ++F++L +   +L++
Sbjct: 859  MNIYTYNIILNGLCK----------------------SNCVDEAFKMFQSLCSKGLQLNI 896

Query: 407  TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
              FN ++  L K  R   A +LF  +P  G  P+VVTY ++   L  EG +E+   L   
Sbjct: 897  ITFNIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLT 956

Query: 467  MEEK------------IRECL------KAIELLHKMAKRYVKPDEITVSILEELLNKDEN 508
            ME+             +R  L      +A   L K+ ++    +  T S L  L ++ E 
Sbjct: 957  MEKSGTPLDSRLLNALVRRLLQRGDISRAGAYLSKLDEKNFSLEASTTSELISLFSRGEY 1016

Query: 509  CHECMNLLPSFLSRNQEES 527
             H   +L   +   N+  S
Sbjct: 1017 QHHAKSLPEKYRLLNEANS 1035



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 109/251 (43%), Gaps = 43/251 (17%)

Query: 284 SIINSLCKDVLVDKAKELFLD-MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
            ++N LC    V +A ++ L  M   G +PD V Y+ L+ G C   R ++A +L   +  
Sbjct: 134 QLLNGLCDGKRVGEAMDVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMAD 193

Query: 343 E---GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN 399
           +    C P+  SY+T+IN +    +V++  +L+ EM+  G+ PD                
Sbjct: 194 DQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPD---------------- 237

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
                 +  +  ++DGLCK+     A  +F+++   G +PN+ TY  +I G         
Sbjct: 238 ------VVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHG--------- 282

Query: 460 AYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519
            Y  +   +E +R       +L +M+    KP+  T   L   L K+  C E      S 
Sbjct: 283 -YLSIGKWKEVVR-------MLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSM 334

Query: 520 LSRNQEESKLT 530
           + +  + S  T
Sbjct: 335 IGKGIKPSVTT 345



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 68/165 (41%), Gaps = 26/165 (15%)

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
           + P+   YS LI  +C MG ++     F  I   G   D    N L+N     ++V EA+
Sbjct: 90  VAPNRCTYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDHIVINQLLNGLCDGKRVGEAM 149

Query: 370 S-LYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
             L   M  +G  PD                         +N L+ GLC   R   A EL
Sbjct: 150 DVLLQRMPELGCMPDT----------------------VSYNILLKGLCNEKRAEEALEL 187

Query: 429 FKKLPR---YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
              +     +   PNVV+Y+ +I G   EG ++K Y+L  +M ++
Sbjct: 188 LHMMADDQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDR 232



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 24/130 (18%)

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406
           P+  +Y+ LI  + ++  +E   + +G ++  G R                      +D 
Sbjct: 92  PNRCTYSILIGCFCRMGHLEHGFAAFGLILKTGWR----------------------MDH 129

Query: 407 TVFNCLVDGLCKSWRLRSAWE-LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
            V N L++GLC   R+  A + L +++P  G  P+ V+Y +++ GLC E   E+A +LL 
Sbjct: 130 IVINQLLNGLCDGKRVGEAMDVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLH 189

Query: 466 DM-EEKIREC 474
            M ++++  C
Sbjct: 190 MMADDQVWSC 199


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 132/463 (28%), Positives = 209/463 (45%), Gaps = 63/463 (13%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           KSGE++  +AL   +    M   P + ++N++L  L         + + +R       PD
Sbjct: 139 KSGEID--NALQVLD---RMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPD 193

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            ++  IL+   CK  GV  A   L  +  K   PDVVT   LI G+C +G+  EA     
Sbjct: 194 VITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLN 253

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
              ++ C+PNVI + I    I+  +C  G       L  DM  +G  P    +N LI   
Sbjct: 254 NMPSYGCQPNVITHNI----ILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFL 309

Query: 242 CCAVNWEDAKGNTSAALELHEEF-VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
           C        +G    A+++ E+  ++G       C P+ LSY  +++  CK+  +D+A E
Sbjct: 310 C-------RQGLLGRAIDILEKMPMHG-------CTPNSLSYNPLLHGFCKEKKMDRAIE 355

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
               M SRG  PD+V Y++L+   C  G++D A ++   + S+GC P   +YNT+I+  S
Sbjct: 356 YLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLS 415

Query: 361 KIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           K+ K E A+ L  EM   G++P                      D+  ++ LV GL +  
Sbjct: 416 KVGKTERAIKLLDEMRRKGLKP----------------------DIITYSSLVSGLSREG 453

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIEL 480
           ++  A + F  L   G  PN +TY  ++ GLC                 K R+  +AI+ 
Sbjct: 454 KVDEAIKFFHDLEGLGIRPNAITYNSIMLGLC-----------------KSRQTDRAIDF 496

Query: 481 LHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
           L  M  +  KP E T +IL E +  +    E ++LL    SR 
Sbjct: 497 LAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRG 539



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 155/345 (44%), Gaps = 30/345 (8%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  +  A+   + M +    P + ++N L+  +  +      I     + + G  P+ ++
Sbjct: 207 ESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVIT 266

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            NI++   C      DA   L  +LRK  SP VVT   LI  LC QG    A  +  K  
Sbjct: 267 HNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMP 326

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD-MKGRGIYPDAFVYNSLIRVYC- 242
              C     PN + Y  ++ G CK+  +++  + +LD M  RG YPD   YN+L+   C 
Sbjct: 327 MHGC----TPNSLSYNPLLHGFCKEKKMDRA-IEYLDIMVSRGCYPDIVTYNTLLTALCK 381

Query: 243 -----CAV---NWEDAKGNTSAALELHEEFVNGNGELGVI--------------CHPDVL 280
                 AV   N   +KG  S  L  +   ++G  ++G                  PD++
Sbjct: 382 DGKVDVAVEILNQLSSKG-CSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDII 440

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
           +Y S+++ L ++  VD+A + F D++  GI P+ + Y+S++ G C   + D A      +
Sbjct: 441 TYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYM 500

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
            S+ C P  ++Y  LI   +     +EAL L  E+ S G+   +S
Sbjct: 501 ISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVKKSS 545



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 127/278 (45%), Gaps = 34/278 (12%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PD++   S+I   C+     KA  +   ++  G +PDV+ Y+ LI GYC  G ID+A ++
Sbjct: 90  PDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQV 149

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------- 383
              ++     PD  +YNT++ +     K+++A+ +    +     PD             
Sbjct: 150 ---LDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCK 206

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
            S + +A +L   + N   + D+  +N L++G+CK  RL  A +    +P YG +PNV+T
Sbjct: 207 ESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVIT 266

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEK----------------IRECL--KAIELLHKMA 485
           + +++  +C  G    A  LL DM  K                 R+ L  +AI++L KM 
Sbjct: 267 HNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMP 326

Query: 486 KRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
                P+ ++ + L     K++     +  L   +SR 
Sbjct: 327 MHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRG 364



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 126/282 (44%), Gaps = 17/282 (6%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DA    + M+    +P + +FN L+  L  +      I + E++   G  P+ +S N L+
Sbjct: 282 DAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLL 341

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           + FCK   +  A   L  ++ +   PD+VT   L+  LC  GK   A  +  +  +  C 
Sbjct: 342 HGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCS 401

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
           P +I     Y ++IDGL K G   +   L  +M+ +G+ PD   Y+SL       V+   
Sbjct: 402 PVLIT----YNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSL-------VSGLS 450

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
            +G    A++   +        G+   P+ ++Y SI+  LCK    D+A +    M S+ 
Sbjct: 451 REGKVDEAIKFFHDLE------GLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKR 504

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
             P    Y+ LI+G    G   +A  L   + S G +  +S+
Sbjct: 505 CKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVKKSSA 546


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/476 (25%), Positives = 214/476 (44%), Gaps = 73/476 (15%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ P  V+ N ++N  CK   +         ++++   PDVVT   LI  LC  G   EA
Sbjct: 76  GVAPTIVTYNTIINGLCKSNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEA 135

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG--IYPDAFVY 234
             L     +  C    +PNV+ Y+ +I+GLCK G +++ R L  +M  +   + P+   Y
Sbjct: 136 RRLHGGMSSRGC----VPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITY 191

Query: 235 NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN--------------------GELGVI 274
           NS +   C        +  T+ A EL     +G+                    G+    
Sbjct: 192 NSFLDGLC-------KQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEA 244

Query: 275 CH---------PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
           C+         P+V++Y +++N LCK   +++A  +   M  +G+ PDV+ YS L+D +C
Sbjct: 245 CNDDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFC 304

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-- 383
              R+D+A +L   + S GC P+  ++N++I+   K ++  EA  +  ++ +  + PD  
Sbjct: 305 KASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKV 364

Query: 384 -------NSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
                   +C      +A+ LF  +     + D+  F  L+DGLCK+ ++ +A ++   +
Sbjct: 365 TFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLM 424

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIREC 474
              G  PNVVTY V++ GLC  G IE+  + L +M                    +    
Sbjct: 425 GNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRT 484

Query: 475 LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
             A++L+ K+      PD +T +IL + L K     + + +L   + +  +    T
Sbjct: 485 DDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFT 540



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 167/367 (45%), Gaps = 66/367 (17%)

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN 213
           S  V     +++ LC  G+   A  +F   +A   R  V P ++ Y +II+GLCK   + 
Sbjct: 42  SRSVADYNIVLQSLCRAGETARALEIFRGEMA---RDGVAPTIVTYNTIINGLCKSNELG 98

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
               LF ++  RG +PD   YN+LI   C A + E+A+        LH     G    G 
Sbjct: 99  AGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEAR-------RLH----GGMSSRG- 146

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDM--KSRGIIPDVVVYSSLIDGYCLMGRID 331
            C P+V++Y  +IN LCK   +D+A+EL  +M  KS  ++P+++ Y+S +DG C      
Sbjct: 147 -CVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTA 205

Query: 332 DARKLFVSIE-----------------------------------SEGCIPDTSSYNTLI 356
           +A +L  S+                                    + G +P+  +YN L+
Sbjct: 206 EACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNDDMIAGGYVPNVVTYNALV 265

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFE 403
           N   K +K+E A ++   M+  GV PD              S + EA EL   + +    
Sbjct: 266 NGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCT 325

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            ++  FN ++DGLCKS R   A+++  ++      P+ VT+ ++I G C  G  E+A  L
Sbjct: 326 PNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASAL 385

Query: 464 LPDMEEK 470
             +M  K
Sbjct: 386 FEEMVAK 392



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 155/332 (46%), Gaps = 49/332 (14%)

Query: 234 YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDV 293
           YN +++  C A       G T+ ALE+    +  +G       P +++Y +IIN LCK  
Sbjct: 48  YNIVLQSLCRA-------GETARALEIFRGEMARDG-----VAPTIVTYNTIINGLCKSN 95

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353
            +    ELF ++  RG  PDVV Y++LID  C  G +++AR+L   + S GC+P+  +Y+
Sbjct: 96  ELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYS 155

Query: 354 TLINSYSKIEKVEEALSLYGEMI--SMGVRPD-------------NSCILEAAELFRTLH 398
            LIN   K+ +++EA  L  EM   S  V P+              S   EA EL R+L 
Sbjct: 156 VLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLR 215

Query: 399 NTKFEL--DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           +    +  D   F+ L+DGLCK  +   A      +   G  PNVVTY  ++ GLC    
Sbjct: 216 DGSLRVSPDTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADK 273

Query: 457 IEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSI 498
           +E+A+ ++  M +                  K     +A+ELLH MA R   P+ +T + 
Sbjct: 274 MERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNS 333

Query: 499 LEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           + + L K +   E   +     +R     K+T
Sbjct: 334 IIDGLCKSDRSGEAFQIALQVYNRMLVPDKVT 365



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 144/319 (45%), Gaps = 17/319 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++  A      M+    TP + +++ L+ A          + L   + + G  P+ V+ N
Sbjct: 273 KMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFN 332

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            +++  CK     +AF    ++  ++  PD VT   LI G C  G F +AS LF + VA 
Sbjct: 333 SIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVA- 391

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
               N+ P+V+ + ++IDGLCK G V   R +   M   G+ P+   YN L+   C    
Sbjct: 392 ---KNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLC---- 444

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G      E  EE V+        C P+ ++Y S++ +LC+    D A +L   +K
Sbjct: 445 ---KSGRIEEPCEFLEEMVSSG------CVPESMTYGSLVYALCRASRTDDALQLVSKLK 495

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           S G  PD V Y+ L+DG    G+ + A  +   +  +G  PD+ ++        +   + 
Sbjct: 496 SFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSGNLA 555

Query: 367 EALSLYGEMISMGVRPDNS 385
             + L   +++ G+ PD +
Sbjct: 556 GTMELLRVVLAKGMLPDAT 574



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 130/291 (44%), Gaps = 17/291 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            +++AL   + M     TP + +FNS++  L           ++ ++    L+PD V+ N
Sbjct: 308 RVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFN 367

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           IL+   CK      A      ++ K   PDV+T G LI GLC  G+   A  +       
Sbjct: 368 ILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNL 427

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                V PNV+ Y  ++ GLCK G + +      +M   G  P++  Y SL+   C A  
Sbjct: 428 ----GVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASR 483

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            +DA       L+L  +  +   +      PD ++Y  +++ L K    ++A  +  +M 
Sbjct: 484 TDDA-------LQLVSKLKSFGWD------PDTVTYNILVDGLWKSGKTEQAITVLEEMV 530

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
            +G  PD   +++   G    G +    +L   + ++G +PD ++ +++++
Sbjct: 531 GKGHQPDSFTFAACFGGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILD 581


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 128/451 (28%), Positives = 198/451 (43%), Gaps = 59/451 (13%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           +K+G+  LNDA   F  ++H   TP   ++ SL+  L     + +   L   +N  G  P
Sbjct: 21  AKAGK--LNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPP 78

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
             V+ N++++  CK   + +A   + +++     PDVVT   ++ GLC   +  EA  LF
Sbjct: 79  SPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLF 138

Query: 181 TKFVAFDCRPN-------------------------------VIPNVICYASIIDGLCKD 209
            +     C PN                               + P+   Y  +IDGL K 
Sbjct: 139 NEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKA 198

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
           G +N+   LF  M   GI P A  YN +I   C A   ++       ALEL +   +   
Sbjct: 199 GKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDE-------ALELFKSMRSKG- 250

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
                C P   ++  +I++ CK   +D+A  L   M   G +PDVV YS+LI G C + R
Sbjct: 251 -----CRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIAR 305

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NS 385
           +DDAR L   +    C P   + NTLI+   K  +++EA  +   M+S G  PD    N+
Sbjct: 306 VDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNT 365

Query: 386 CIL---------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
            +           A EL   +       ++  +  LV GLCK+ RL  A  +F ++   G
Sbjct: 366 LVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSG 425

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
             PN+ TYT +I G C  G ++    L  +M
Sbjct: 426 CAPNLFTYTALILGFCSAGQVDGGLKLFGEM 456



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 118/453 (26%), Positives = 202/453 (44%), Gaps = 63/453 (13%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           KS  VE  +AL  FN M  +  TP   S N+++  L  +        +   +    + PD
Sbjct: 127 KSSRVE--EALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPD 184

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             S  IL++   K   +++A+    R+L    +P  VT   +I G+C+     EA  LF 
Sbjct: 185 SWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFK 244

Query: 182 KFVAFDCRPNV-------------------------------IPNVICYASIIDGLCKDG 210
              +  CRP+                                +P+V+ Y+++I GLC   
Sbjct: 245 SMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIA 304

Query: 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGE 270
            V+  R L  DM  R   P     N+LI   C A       G    A E+ +  V+ +G+
Sbjct: 305 RVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKA-------GRIKEAREVLDAMVS-SGQ 356

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
                 PDV++Y ++++  C+    ++A+EL  DM +RG+ P+VV Y++L+ G C   R+
Sbjct: 357 -----SPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRL 411

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE- 389
            +A  +F  ++S GC P+  +Y  LI  +    +V+  L L+GEM+  G+ PD+      
Sbjct: 412 PEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTL 471

Query: 390 AAELFRTLHNTKFELDL---------------TVFNCLVDGLCKSWRLRSAWELFKKLPR 434
           AAEL ++  + +  L++                V+   VDGL ++ ++  A    + + R
Sbjct: 472 AAELCKSGRSAR-ALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVR 530

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            G  P       ++ GLC  G   +A  +L ++
Sbjct: 531 GGQLPAPERCASLVAGLCKSGQGGEARAVLEEI 563



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 122/418 (29%), Positives = 183/418 (43%), Gaps = 56/418 (13%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +N   + PD  S  IL++   K   ++DA     ++L    +P  V    LI GLCM   
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
           F +A  LF       C P+ +     Y  +ID  CK G + +   L   M   G  PD  
Sbjct: 61  FDDARELFADMNRRGCPPSPVT----YNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVV 116

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            YN+++   C +   E+       AL L  E       LG  C P+  S+ +II  LC+ 
Sbjct: 117 TYNTVMDGLCKSSRVEE-------ALLLFNEME----RLG--CTPNRRSHNTIILGLCQQ 163

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             +D+A ++F +M+++ I PD   Y  LIDG    G++++A KLF  +   G  P   +Y
Sbjct: 164 SKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTY 223

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCL 412
           N +I+       ++EAL L+  M S G RP                 ++F      FN L
Sbjct: 224 NVVIHGMCLAYTLDEALELFKSMRSKGCRP-----------------SRF-----TFNIL 261

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIR 472
           +D  CK  +L  A+ L K++   G  P+VVTY+ +I GLC    ++ A  LL D      
Sbjct: 262 IDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLED------ 315

Query: 473 ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
                      M KR  KP  +T + L   L K     E   +L + +S  Q    +T
Sbjct: 316 -----------MVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVT 362



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 158/341 (46%), Gaps = 44/341 (12%)

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
           M  R + PD++ Y  LI     A    DA+        L ++ ++     GV   P  ++
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDAR-------NLFQKLLHS----GVT--PSTVA 47

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y S+I+ LC     D A+ELF DM  RG  P  V Y+ +ID  C  G +++A  L   + 
Sbjct: 48  YTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMI 107

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCIL--------- 388
            +G +PD  +YNT+++   K  +VEEAL L+ EM  +G  P+    N+ IL         
Sbjct: 108 EDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKID 167

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
           +A ++F  +       D   +  L+DGL K+ +L  A++LF+++   G  P+ VTY V+I
Sbjct: 168 QACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVI 227

Query: 449 CGLCIEGGIEKAYDLLPDMEEK-------------IRECLK-----AIELLHKMAKRYVK 490
            G+C+   +++A +L   M  K                C +     A  LL +M      
Sbjct: 228 HGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHV 287

Query: 491 PDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLTR 531
           PD +T S L   L       +  +LL   + R  + + +T+
Sbjct: 288 PDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQ 328


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/400 (28%), Positives = 191/400 (47%), Gaps = 32/400 (8%)

Query: 81  MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSD 140
           M+P  +  ++N+L+  L G+    N + + + +   G +PD V+  IL+   CK  G   
Sbjct: 152 MEPDSY--TYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQ 209

Query: 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200
           A   L  +  K  +PD++T   ++ G+C +G+  +A        +  C PN +     Y 
Sbjct: 210 AMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTV----SYN 265

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL 260
            ++ GLC          L  +M  +G  P+   +N LI   C        +G    A+E+
Sbjct: 266 IVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLC-------RRGLVEPAMEV 318

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
            ++           C P+ LSY  I+++ CK   +D+A      M SRG  PD+V Y++L
Sbjct: 319 LDQIPKYG------CTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTL 372

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           +   C  G +D A +L   ++ +GC P   SYNT+I+  +K  K +EAL L  EM++ G+
Sbjct: 373 LTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGL 432

Query: 381 RPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           +PD                I EA   F  + +     +  ++N ++ GLCK     +A +
Sbjct: 433 QPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNAID 492

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           LF  +   G  PN  TYT++I GL  EG +++A +LL ++
Sbjct: 493 LFIYMISNGCMPNESTYTILIEGLTYEGLVKEARELLGEL 532



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 178/386 (46%), Gaps = 65/386 (16%)

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           LI+ LC  G+  EA     + V   C P+V+     Y +++ G C  G ++  R L  DM
Sbjct: 100 LIKKLCASGRTAEA-----RRVLAACEPDVM----AYNAMVAGYCVTGQLDAARRLVADM 150

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
               + PD++ YN+LIR  C        +G T  AL + ++ +         C PDV++Y
Sbjct: 151 P---MEPDSYTYNTLIRGLC-------GRGRTGNALVVLDDMLRRG------CVPDVVTY 194

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
             ++ + CK     +A +L  +M+++G  PD++ Y+ +++G C  GR+DDA +   S+ S
Sbjct: 195 TILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPS 254

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF 402
            GC P+T SYN ++      E+ E+A  L  EM   G  P+                   
Sbjct: 255 HGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPN------------------- 295

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
              +  FN L+  LC+   +  A E+  ++P+YG  PN ++Y  ++   C +  +++A  
Sbjct: 296 ---VVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMA 352

Query: 463 LL---------PDMEE---------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLN 504
            +         PD+           +  E   A+ELLH++  +   P  I+ + + + L 
Sbjct: 353 FVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLT 412

Query: 505 KDENCHECMNLLPSFLSRNQEESKLT 530
           K     E + LL   +++  +   +T
Sbjct: 413 KAGKTKEALELLNEMVTKGLQPDIIT 438



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 178/395 (45%), Gaps = 61/395 (15%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKV-FSPDVVTLGCLIRGLCMQGKFTEASG 178
           PD ++ N ++  +C    V+    A  R++  +   PD  T   LIRGLC +G+   A  
Sbjct: 122 PDVMAYNAMVAGYC----VTGQLDAARRLVADMPMEPDSYTYNTLIRGLCGRGRTGNALV 177

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           +    +   C    +P+V+ Y  +++  CK     +   L  +M+ +G  PD   YN ++
Sbjct: 178 VLDDMLRRGC----VPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVV 233

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
              C     +DA            EF+      G  C P+ +SY  ++  LC     + A
Sbjct: 234 NGICQEGRVDDAI-----------EFLKSLPSHG--CEPNTVSYNIVLKGLCTAERWEDA 280

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
           ++L  +M  +G  P+VV ++ LI   C  G ++ A ++   I   GC P++ SYN ++++
Sbjct: 281 EKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHA 340

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
           + K +K++ A++    M+S G  PD                      +  +N L+  LC+
Sbjct: 341 FCKQKKMDRAMAFVELMVSRGCYPD----------------------IVSYNTLLTALCR 378

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAI 478
              + +A EL  +L   G  P +++Y  +I GL   G              K +E   A+
Sbjct: 379 GGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAG--------------KTKE---AL 421

Query: 479 ELLHKMAKRYVKPDEITVSILEELLNKDENCHECM 513
           ELL++M  + ++PD IT S +   L +++   E +
Sbjct: 422 ELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAI 456



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 149/316 (47%), Gaps = 17/316 (5%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  ++DA+ F   +      P   S+N +L  L   + + +   L   ++  G  P+ V+
Sbjct: 239 EGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVT 298

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N+L++  C+   V  A   L +I +   +P+ ++   ++   C Q K   A       V
Sbjct: 299 FNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMV 358

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
           +  C     P+++ Y +++  LC+ G V+    L   +K +G  P    YN++I      
Sbjct: 359 SRGC----YPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVI------ 408

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
            +     G T  ALEL  E V           PD+++Y +I + LC++  +++A   F  
Sbjct: 409 -DGLTKAGKTKEALELLNEMVTKG------LQPDIITYSTISSGLCREDRIEEAIRAFCK 461

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           ++  GI P+ V+Y++++ G C      +A  LF+ + S GC+P+ S+Y  LI   +    
Sbjct: 462 VQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGL 521

Query: 365 VEEALSLYGEMISMGV 380
           V+EA  L GE+ S GV
Sbjct: 522 VKEARELLGELCSRGV 537



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 121/281 (43%), Gaps = 43/281 (15%)

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
           PN +P+       + GL + G + +   L   M G           +LI+  C       
Sbjct: 53  PNAVPHRAVSNDRLRGLVRRGDLEEALRLVESMSGLEPSAAPGPCAALIKKLC------- 105

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
           A G T+ A  +              C PDV++Y +++   C    +D A+ L  DM    
Sbjct: 106 ASGRTAEARRVL-----------AACEPDVMAYNAMVAGYCVTGQLDAARRLVADMP--- 151

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
           + PD   Y++LI G C  GR  +A  +   +   GC+PD  +Y  L+ +  K    ++A+
Sbjct: 152 MEPDSYTYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAM 211

Query: 370 SLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
            L  EM + G  P                      D+  +N +V+G+C+  R+  A E  
Sbjct: 212 KLLDEMRAKGCAP----------------------DIITYNVVVNGICQEGRVDDAIEFL 249

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           K LP +G EPN V+Y +++ GLC     E A  L+ +M +K
Sbjct: 250 KSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQK 290



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 116/243 (47%), Gaps = 20/243 (8%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           TP   S+N +L A   +K     +   E + + G  PD VS N L+   C+   V  A  
Sbjct: 328 TPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVE 387

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
            L ++  K  +P +++   +I GL   GK  EA  L  + V       + P++I Y++I 
Sbjct: 388 LLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVT----KGLQPDIITYSTIS 443

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
            GLC++  + +    F  ++  GI P+  +YN+++   C        +  T  A++L   
Sbjct: 444 SGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLC-------KRRETHNAIDLFIY 496

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSS---L 320
            ++ NG     C P+  +Y  +I  L  + LV +A+EL  ++ SRG++   ++  +   L
Sbjct: 497 MIS-NG-----CMPNESTYTILIEGLTYEGLVKEARELLGELCSRGVVSKGLINKAAIRL 550

Query: 321 IDG 323
           +DG
Sbjct: 551 LDG 553


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 141/563 (25%), Positives = 247/563 (43%), Gaps = 101/563 (17%)

Query: 11  TAFKVKPSSSLRNSKKPISLNS--ENEPSSLHSNSVST--VEEKTKLLKYLSENSKSGEV 66
            A KV+ S     ++K  +L+S   N   + H +SV++    E  +   +L +  ++GE+
Sbjct: 59  AASKVESSGLNGRAQKFETLSSGYSNSNGNGHYSSVNSSFALEDVESNNHLRQMVRTGEL 118

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E  +   F   M++    P +    +L+              + E L   G +PD ++ N
Sbjct: 119 E--EGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYN 176

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           ++++ +CK   +++A   L R+     SPDVVT   ++R LC  GK  +A  +  + +  
Sbjct: 177 VMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQR 233

Query: 187 DCRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKV 215
           DC P+VI                               P+V+ Y  +++G+CK+G +++ 
Sbjct: 234 DCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEA 293

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA---------KGNTSAALELH--EEF 264
                DM   G  P+   +N ++R  C    W DA         KG + + +  +    F
Sbjct: 294 IKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINF 353

Query: 265 VNGNGELGVI-----------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
           +   G LG             C P+ LSY  +++  CK+  +D+A E    M SRG  PD
Sbjct: 354 LCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPD 413

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           +V Y++++   C  G+++DA ++   + S+GC P   +YNT+I+  +K  K  +A+ L  
Sbjct: 414 IVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLD 473

Query: 374 EMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
           EM +  ++PD                         ++ LV GL +  ++  A + F +  
Sbjct: 474 EMRAKDLKPDT----------------------ITYSSLVGGLSREGKVDEAIKFFHEFE 511

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDE 493
           R G  PN VT+  ++ GLC                 K R+  +AI+ L  M  R  KP+E
Sbjct: 512 RMGIRPNAVTFNSIMLGLC-----------------KSRQTDRAIDFLVFMINRGCKPNE 554

Query: 494 ITVSILEELLNKDENCHECMNLL 516
            + +IL E L  +    E + LL
Sbjct: 555 TSYTILIEGLAYEGMAKEALELL 577



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 167/368 (45%), Gaps = 59/368 (16%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
           PD++    LIRG C  GK  +A+ +             +P+VI Y  +I G CK G +N 
Sbjct: 135 PDIIPCTTLIRGFCRLGKTRKAAKILEILEG----SGAVPDVITYNVMISGYCKAGEINN 190

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
              +   M    + PD   YN+++R  C         G    A+E+ +  +  +      
Sbjct: 191 ALSVLDRMS---VSPDVVTYNTILRSLC-------DSGKLKQAMEVLDRMLQRD------ 234

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
           C+PDV++Y  +I + C+D  V  A +L  +M+ RG  PDVV Y+ L++G C  GR+D+A 
Sbjct: 235 CYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAI 294

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
           K    + S GC P+  ++N ++ S     +  +A  L  +M+  G  P            
Sbjct: 295 KFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPS----------- 343

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
                      +  FN L++ LC+   L  A ++ +K+P++G +PN ++Y  ++ G C E
Sbjct: 344 -----------VVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKE 392

Query: 455 GGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMN 514
             +++A                 IE L +M  R   PD +T + +   L KD    + + 
Sbjct: 393 KKMDRA-----------------IEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVE 435

Query: 515 LLPSFLSR 522
           +L    S+
Sbjct: 436 ILNQLSSK 443



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 151/354 (42%), Gaps = 38/354 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +  A+   + M     TP + ++N L+  +  +      I     + + G  P+ ++ NI
Sbjct: 255 VGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNI 314

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++   C      DA   L  +LRK FSP VVT   LI  LC +G    A  +  K     
Sbjct: 315 ILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHG 374

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C+PN +     Y  ++ G CK+  +++       M  RG YPD   YN+++   C     
Sbjct: 375 CQPNSLS----YNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKV 430

Query: 248 EDA----------------------------KGNTSAALELHEEFVNGNGELGVICHPDV 279
           EDA                             G T  A++L +E    +        PD 
Sbjct: 431 EDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKD------LKPDT 484

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           ++Y S++  L ++  VD+A + F + +  GI P+ V ++S++ G C   + D A    V 
Sbjct: 485 ITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVF 544

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAEL 393
           + + GC P+ +SY  LI   +     +EAL L  E+ + G+   +S    A ++
Sbjct: 545 MINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLMKKSSAEQVAGKM 598


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/445 (27%), Positives = 203/445 (45%), Gaps = 75/445 (16%)

Query: 117 GLLPDFVSLNILMNCFCK-MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
           G +P  +S N +++   +    +S A      +L+   SP+V T   LIRG C+ G    
Sbjct: 164 GFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDV 223

Query: 176 ASGLFTKFVAFDCRPNVI-------------------------------PNVICYASIID 204
           A   F +     C PNV+                               PN+I Y  +I+
Sbjct: 224 ALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVIN 283

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           GLC++G + ++  +  +M  RG   D   YN+LI+ YC        +GN   AL +H E 
Sbjct: 284 GLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYC-------KEGNFHQALVMHAEM 336

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           +           P V++Y S+I+S+CK   +++A E    M+ RG+ P+   Y++L+DG+
Sbjct: 337 LRHG------LSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGF 390

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD- 383
              G +++A ++   +   G  P   +YN LIN +    K+ +A+++  +M   G+ PD 
Sbjct: 391 SQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDV 450

Query: 384 --NSCIL----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
              S +L          EA  + R +     + D   ++ L+ G C+  R + A +LF +
Sbjct: 451 VSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDE 510

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKP 491
           + R G  P+  TYT +I   C+EG ++                 KAI+L ++M ++ V P
Sbjct: 511 MLRVGLPPDEFTYTALINAYCMEGDLQ-----------------KAIQLHNEMVEKGVLP 553

Query: 492 DEITVSILEELLNKDENCHECMNLL 516
           D +T S+L   LNK     E   LL
Sbjct: 554 DVVTYSVLINGLNKQARTREAKRLL 578



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 132/466 (28%), Positives = 210/466 (45%), Gaps = 66/466 (14%)

Query: 85  PFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142
           P + S+N ++  L   G+   ++F+ L+E +N  G   D V+ N L+  +CK      A 
Sbjct: 273 PNLISYNVVINGLCREGRMKEISFV-LTE-MNKRGYSLDEVTYNTLIKGYCKEGNFHQAL 330

Query: 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202
           V    +LR   SP V+T   LI  +C  G    A    T+F+       + PN   Y ++
Sbjct: 331 VMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRA----TEFLDQMRVRGLCPNERTYTTL 386

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
           +DG  + G++N+   +  +M   G  P    YN+LI  +C A    DA     A LE   
Sbjct: 387 VDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDA----IAVLE--- 439

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
                  E G+   PDV+SY ++++  C+   VD+A  +   M ++GI PD + YSSLI 
Sbjct: 440 ----DMKEKGLT--PDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQ 493

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
           G+C   R  +A  LF  +   G  PD  +Y  LIN+Y     +++A+ L+ EM+  GV P
Sbjct: 494 GFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLP 553

Query: 383 D-------------NSCILEAAE-LFRTLHNTKFELDLT----VFNC----------LVD 414
           D              +   EA   L +  +      D+T    + NC          L+ 
Sbjct: 554 DVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIK 613

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC 474
           G C    +  A ++F+ +     +P+   Y VMI G C  G I KAY L  +M       
Sbjct: 614 GFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEM------- 666

Query: 475 LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
           +K+  LLH           +TV  L + L+K+   +E  +++ + L
Sbjct: 667 VKSGFLLHT----------VTVIALVKTLHKEGKVNELNSVIANVL 702



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 62/296 (20%), Positives = 119/296 (40%), Gaps = 24/296 (8%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++++AL     M+     P   +++SL+     ++       L + +  +GL PD  +  
Sbjct: 465 DVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYT 524

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+N +C    +  A      ++ K   PDVVT   LI GL  Q +  EA  L  K    
Sbjct: 525 ALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYE 584

Query: 187 DCRPN------VIPN-----VICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
           +  P+      +I N          S+I G C  G + +   +F  M  +   PD   YN
Sbjct: 585 ESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYN 644

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
            +I  +C         G+   A  L++E V      G + H   ++  +++ +L K+  V
Sbjct: 645 VMIHGHCRG-------GDIRKAYSLYKEMVKS----GFLLH--TVTVIALVKTLHKEGKV 691

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
           ++   +  ++     + +      L++     G +D    +   +  +G +P+  S
Sbjct: 692 NELNSVIANVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLPNGKS 747



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 105/234 (44%), Gaps = 34/234 (14%)

Query: 331 DDARKLFVSIES--EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---DNS 385
           +DA  +F S++   + C   +S ++ ++ SYS++  +++ALS+     + G  P     +
Sbjct: 114 EDASLVFRSLQETYDLCNSTSSVFDLVVKSYSRLCLIDKALSIVHLSQAHGFMPGVLSYN 173

Query: 386 CILEAA-----------ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
            +L+A             +F+ +  ++   ++  +N L+ G C +  L  A   F ++ +
Sbjct: 174 AVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEK 233

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE-------------C----LKA 477
            G  PNVVTY  +I G C    I+  ++LL  M  K  E             C    +K 
Sbjct: 234 KGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKE 293

Query: 478 IE-LLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           I  +L +M KR    DE+T + L +   K+ N H+ + +    L      S +T
Sbjct: 294 ISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVIT 347


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/409 (28%), Positives = 208/409 (50%), Gaps = 34/409 (8%)

Query: 75  FNYMIHMQPTPFMPS-FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
           FN +  ++ + F P+ F  L+ A +        + +  +++   +LP   + N++++   
Sbjct: 113 FNVLSRLESSKFTPNVFGVLIIAFSEMGLVEEALWVYYKMD---VLPAMQACNMVLDGLV 169

Query: 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
           K       +   G ++ +  SP+VVT G LI G C QG F +A  LF + +       + 
Sbjct: 170 KKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMI----EKKIF 225

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P V+ Y  +I GLC +  +++   +F  M+  G+ P+ + YN+++  YC          +
Sbjct: 226 PTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYC-------KIAH 278

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
              ALEL++E + G+G L     P+V+++  +I+ LCK   +  A++  +DM S G++P+
Sbjct: 279 VKKALELYQEML-GDGLL-----PNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPN 332

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           + VY+ LIDGYC  G + +A  L   IE    +PD  +Y+ LI     ++++EEA  L  
Sbjct: 333 IFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQ 392

Query: 374 EMISMGVRP---------DNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           EM   G  P         D  C    + +A E+   +     E ++  F+ L+DG CK+ 
Sbjct: 393 EMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAG 452

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           ++ +A  L+ ++   G  P+VV YT +I G   +G  ++A+ L  +M+E
Sbjct: 453 KMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQE 501



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 120/411 (29%), Positives = 191/411 (46%), Gaps = 52/411 (12%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           A   F+ MI  +  P +  +  L+  L G+        +   +   G+LP+  + N +M+
Sbjct: 212 AFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMD 271

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
            +CK+  V  A      +L     P+VVT G LI GLC   +   A        +F    
Sbjct: 272 GYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASF---- 327

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
            V+PN+  Y  +IDG CK G +++   L  +++   I PD F Y+ LI+  C     E+A
Sbjct: 328 GVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEA 387

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
            G       L +E +   G L     P+ ++Y ++I+  CK+  ++KA E+   M  +GI
Sbjct: 388 DG-------LLQE-MKKKGFL-----PNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGI 434

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
            P+++ +S+LIDGYC  G+++ A  L+  +  +G +PD  +Y  LI+ + K    +EA  
Sbjct: 435 EPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFR 494

Query: 371 LYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF- 429
           L+ EM   G+ P                      ++   +CL+DGLCK  R+  A +LF 
Sbjct: 495 LHKEMQEAGLHP----------------------NVFTLSCLIDGLCKDGRISDAIKLFL 532

Query: 430 ------------KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
                        +L R    PN V YT +I GLC +G I KA     DM 
Sbjct: 533 AKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMR 583



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/391 (26%), Positives = 190/391 (48%), Gaps = 34/391 (8%)

Query: 64  GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV 123
           GE  +++A   F  M +    P + ++N+++       +    + L + +   GLLP+ V
Sbjct: 240 GESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVV 299

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFS----PDVVTLGCLIRGLCMQGKFTEASGL 179
           +  IL++  CK    +D  V+  + L  + S    P++    CLI G C  G  +EA  L
Sbjct: 300 TFGILIDGLCK----TDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSL 355

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
            ++      +  ++P+V  Y+ +I GLC    + +   L  +MK +G  P+A  YN+LI 
Sbjct: 356 HSEIE----KHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLID 411

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            YC        +GN   A+E+  +      E G+   P+++++ ++I+  CK   ++ A 
Sbjct: 412 GYC-------KEGNMEKAIEVCSQMT----EKGI--EPNIITFSTLIDGYCKAGKMEAAM 458

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            L+ +M  +G++PDVV Y++LIDG+   G   +A +L   ++  G  P+  + + LI+  
Sbjct: 459 GLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGL 518

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            K  ++ +A+ L+  +   G     S   +  EL R+L +        ++  L+ GLC  
Sbjct: 519 CKDGRISDAIKLF--LAKTGTDTTGS---KTNELDRSLCSPNH----VMYTALIQGLCTD 569

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
            R+  A + F  +   G  P+V T  V+I G
Sbjct: 570 GRIFKASKFFSDMRCSGLRPDVFTCIVIIQG 600



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 110/428 (25%), Positives = 194/428 (45%), Gaps = 74/428 (17%)

Query: 90  FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149
           +++++  L G K Y    CL   L           +  L N     I  S  F  L R+ 
Sbjct: 73  YSAIIHVLTGAKLYAKARCLMRDL-----------IQCLQNSRRSRICCS-VFNVLSRLE 120

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD 209
              F+P+V   G LI      G   EA  ++ K        +V+P +     ++DGL K 
Sbjct: 121 SSKFTPNV--FGVLIIAFSEMGLVEEALWVYYKM-------DVLPAMQACNMVLDGLVKK 171

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
           G  + +  ++ DM  RG  P+   Y +LI   CC       +G+   A  L +E +    
Sbjct: 172 GRFDTMWKVYGDMVARGASPNVVTYGTLID-GCCR------QGDFLKAFRLFDEMIEKK- 223

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
                  P V+ Y  +I  LC +  + +A+ +F  M++ G++P++  Y++++DGYC +  
Sbjct: 224 -----IFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAH 278

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE 389
           +  A +L+  +  +G +P+  ++  LI+   K +++  A     +M S GV P+      
Sbjct: 279 VKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPN------ 332

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
                           + V+NCL+DG CK+  L  A  L  ++ ++   P+V TY+++I 
Sbjct: 333 ----------------IFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIK 376

Query: 450 GLCIEGGIEKAYDLLPDMEEK----------------IRE--CLKAIELLHKMAKRYVKP 491
           GLC    +E+A  LL +M++K                 +E    KAIE+  +M ++ ++P
Sbjct: 377 GLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEP 436

Query: 492 DEITVSIL 499
           + IT S L
Sbjct: 437 NIITFSTL 444



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 154/361 (42%), Gaps = 51/361 (14%)

Query: 66  VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
             +  AL  +  M+     P + +F  L+  L      V+       + + G++P+    
Sbjct: 277 AHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVY 336

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           N L++ +CK   +S+A      I +    PDV T   LI+GLC   +  EA GL  +   
Sbjct: 337 NCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMK- 395

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
              +   +PN + Y ++IDG CK+G + K   +   M  +GI P+   +++LI  YC A 
Sbjct: 396 ---KKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAG 452

Query: 246 NWEDA----------------------------KGNTSAALELHEEFVNGNGELGVICHP 277
             E A                             GNT  A  LH+E      E G+  HP
Sbjct: 453 KMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEM----QEAGL--HP 506

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII-------------PDVVVYSSLIDGY 324
           +V +   +I+ LCKD  +  A +LFL                     P+ V+Y++LI G 
Sbjct: 507 NVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGL 566

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           C  GRI  A K F  +   G  PD  +   +I  + +   + + + L  +++ MG+ P++
Sbjct: 567 CTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNS 626

Query: 385 S 385
           S
Sbjct: 627 S 627



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 151/322 (46%), Gaps = 14/322 (4%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L++AL   + +   +  P + +++ L+  L G         L + +   G LP+ V+ N 
Sbjct: 349 LSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNT 408

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++ +CK   +  A     ++  K   P+++T   LI G C  GK   A GL+T+ V   
Sbjct: 409 LIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVI-- 466

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               ++P+V+ Y ++IDG  KDG   +   L  +M+  G++P+ F  + LI   C     
Sbjct: 467 --KGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLC----- 519

Query: 248 EDAKGNTSAALELHEEFVNGNG----ELG-VICHPDVLSYCSIINSLCKDVLVDKAKELF 302
           +D + + +  L L +   +  G    EL   +C P+ + Y ++I  LC D  + KA + F
Sbjct: 520 KDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFF 579

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
            DM+  G+ PDV     +I G+     + D   L   I   G IP++S Y  L   Y + 
Sbjct: 580 SDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEES 639

Query: 363 EKVEEALSLYGEMISMGVRPDN 384
             ++ AL    ++  +G+   N
Sbjct: 640 GYLKSALRCSEDLSGIGIGCSN 661


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 130/442 (29%), Positives = 205/442 (46%), Gaps = 57/442 (12%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A+     M+     P   ++NS++            I   +++++ G+ PD V+ N 
Sbjct: 250 MDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNS 309

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           LM+  CK    ++A      + ++   P++ T G L++G   +G   E  GL    V   
Sbjct: 310 LMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNG 369

Query: 188 CRPN-------------------------------VIPNVICYASIIDGLCKDGFVNKVR 216
             PN                               + P+ + Y ++I  LCK G V    
Sbjct: 370 IHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAM 429

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
             F  M    + P   VYNSLI   C    W+ AK       EL  E ++       IC 
Sbjct: 430 RYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK-------ELILEMLDRG-----IC- 476

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
            D + + SII+S CK+  V ++++LF  M   G+ PD++ YS+LIDGYCL G++D+A KL
Sbjct: 477 LDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKL 536

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCILE---- 389
             S+ S G  PD  +YNTLIN Y KI ++E+AL L+ EM S GV PD    + IL+    
Sbjct: 537 LASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQ 596

Query: 390 ------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                 A EL+  +  +  +L+L+ +N ++ GLCK+     A  +F+ L     +    T
Sbjct: 597 TRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRT 656

Query: 444 YTVMICGLCIEGGIEKAYDLLP 465
           + +MI  L   G  ++A DL  
Sbjct: 657 FNIMIGALLKVGRNDEAKDLFA 678



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 185/403 (45%), Gaps = 61/403 (15%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+LP+ V+ + ++   CK   +  A   L  +++    P+  T   ++ G C  G+  EA
Sbjct: 229 GILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEA 288

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
            G   K  +      V P+V+ Y S++D LCK+G   + R +F  M  RG+ P+   Y +
Sbjct: 289 IGFLKKMHS----DGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGT 344

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHE--EFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294
           L++ Y         KG   A +E+H   + +  NG      HP+   +  +I +  K   
Sbjct: 345 LLQGYA-------TKG---ALVEMHGLLDLMVRNG-----IHPNHYVFSILICAYAKQGK 389

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           VD+A  +F  M+ +G+ PD V Y ++I   C  GR++DA + F  +  E   P    YN+
Sbjct: 390 VDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNS 449

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           LI+S    +K ++A  L  EM+  G+     C                 LD   FN ++D
Sbjct: 450 LIHSLCIFDKWDKAKELILEMLDRGI-----C-----------------LDTIFFNSIID 487

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE----- 469
             CK  R+  + +LF  + R G +P+++TY+ +I G C+ G +++A  LL  M       
Sbjct: 488 SHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKP 547

Query: 470 -------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                        KI     A+ L  +M    V PD IT +I+
Sbjct: 548 DCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNII 590



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 97/391 (24%), Positives = 171/391 (43%), Gaps = 66/391 (16%)

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP-----NVICYASIIDGLCK 208
           +P++ T G LI   C  G+           + F    NVI      + I +  ++ GLC 
Sbjct: 88  TPNLCTYGILIGSCCCAGRLD---------LGFAALGNVIKKGFRVDAIAFTPLLKGLCA 138

Query: 209 DGFV-NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
           D    + + ++   M   G  P+ F YN L++  C        +  +  ALEL +   + 
Sbjct: 139 DKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLC-------DENRSQEALELLQMMPDD 191

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
            G+    C PDV+SY ++IN   K+  +DKA   + +M  RGI+P+VV YSS+I   C  
Sbjct: 192 GGD----CPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKA 247

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
             +D A ++  S+   G +P+  +YN++++ Y    + +EA+    +M S GV P     
Sbjct: 248 QAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEP----- 302

Query: 388 LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
                            D+  +N L+D LCK+ R   A ++F  + + G +P + TY  +
Sbjct: 303 -----------------DVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTL 345

Query: 448 ICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYV 489
           + G   +G + + + LL  M                    K  +  +A+ +  KM ++ +
Sbjct: 346 LQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGL 405

Query: 490 KPDEITVSILEELLNKDENCHECMNLLPSFL 520
            PD +T   +  +L K     + M      +
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAMRYFEQMI 436



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 118/481 (24%), Positives = 199/481 (41%), Gaps = 71/481 (14%)

Query: 39  LHSNSVS-TVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGAL 97
           +HS+ V   V     L+ YL +N +  E     A   F+ M      P + ++ +LL   
Sbjct: 295 MHSDGVEPDVVTYNSLMDYLCKNGRCTE-----ARKMFDSMTKRGLKPEITTYGTLLQGY 349

Query: 98  AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDV 157
           A K   V    L + +   G+ P+    +IL+  + K   V  A +   ++ ++  +PD 
Sbjct: 350 ATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDT 409

Query: 158 VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRV 217
           VT G +I  LC  G+  +A   F + +       + P  I Y S+I  LC     +K + 
Sbjct: 410 VTYGTVIGILCKSGRVEDAMRYFEQMI----DERLSPGNIVYNSLIHSLCIFDKWDKAKE 465

Query: 218 LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277
           L L+M  RGI  D   +NS+I  +C        +G    + +L +  V     +GV   P
Sbjct: 466 LILEMLDRGICLDTIFFNSIIDSHC-------KEGRVIESEKLFDLMV----RIGV--KP 512

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           D+++Y ++I+  C    +D+A +L   M S G+ PD V Y++LI+GYC + R++DA  LF
Sbjct: 513 DIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLF 572

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------- 383
             +ES G  PD  +YN ++    +  +   A  LY  +   G + +              
Sbjct: 573 REMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKN 632

Query: 384 -----------NSCIL-----------------------EAAELFRTLHNTKFELDLTVF 409
                      N C+                        EA +LF  L       D+  +
Sbjct: 633 NLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTY 692

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           + + + L +   L    +LF  +   G   N      ++  L   G I +A   L  ++E
Sbjct: 693 SLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDE 752

Query: 470 K 470
           K
Sbjct: 753 K 753


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 130/442 (29%), Positives = 205/442 (46%), Gaps = 57/442 (12%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A+     M+     P   ++NS++            I   +++++ G+ PD V+ N 
Sbjct: 250 MDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNS 309

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           LM+  CK    ++A      + ++   P++ T G L++G   +G   E  GL    V   
Sbjct: 310 LMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNG 369

Query: 188 CRPN-------------------------------VIPNVICYASIIDGLCKDGFVNKVR 216
             PN                               + P+ + Y ++I  LCK G V    
Sbjct: 370 IHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAM 429

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
             F  M    + P   VYNSLI   C    W+ AK       EL  E ++       IC 
Sbjct: 430 RYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK-------ELILEMLDRG-----IC- 476

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
            D + + SII+S CK+  V ++++LF  M   G+ PD++ YS+LIDGYCL G++D+A KL
Sbjct: 477 LDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKL 536

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCILE---- 389
             S+ S G  PD  +YNTLIN Y KI ++E+AL L+ EM S GV PD    + IL+    
Sbjct: 537 LASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQ 596

Query: 390 ------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                 A EL+  +  +  +L+L+ +N ++ GLCK+     A  +F+ L     +    T
Sbjct: 597 TRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRT 656

Query: 444 YTVMICGLCIEGGIEKAYDLLP 465
           + +MI  L   G  ++A DL  
Sbjct: 657 FNIMIGALLKVGRNDEAKDLFA 678



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 185/403 (45%), Gaps = 61/403 (15%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+LP+ V+ + ++   CK   +  A   L  +++    P+  T   ++ G C  G+  EA
Sbjct: 229 GILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEA 288

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
            G   K  +      V P+V+ Y S++D LCK+G   + R +F  M  RG+ P+   Y +
Sbjct: 289 IGFLKKMHS----DGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGT 344

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHE--EFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294
           L++ Y         KG   A +E+H   + +  NG      HP+   +  +I +  K   
Sbjct: 345 LLQGYA-------TKG---ALVEMHGLLDLMVRNG-----IHPNHYVFSILICAYAKQGK 389

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           VD+A  +F  M+ +G+ PD V Y ++I   C  GR++DA + F  +  E   P    YN+
Sbjct: 390 VDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNS 449

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           LI+S    +K ++A  L  EM+  G+     C                 LD   FN ++D
Sbjct: 450 LIHSLCIFDKWDKAKELILEMLDRGI-----C-----------------LDTIFFNSIID 487

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE----- 469
             CK  R+  + +LF  + R G +P+++TY+ +I G C+ G +++A  LL  M       
Sbjct: 488 SHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKP 547

Query: 470 -------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                        KI     A+ L  +M    V PD IT +I+
Sbjct: 548 DCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNII 590



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 171/386 (44%), Gaps = 56/386 (14%)

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFV- 212
           +P++ T G L+   C  G+           +    +   I + I +  ++ GLC D    
Sbjct: 88  TPNLCTYGILMGSCCCAGRLDLGFAALGNVI----KKGFIVDAIAFTPMLKGLCADKRTS 143

Query: 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
           + + ++   M   G  P+ F YN L++  C     +D +  +  ALEL +   +  G+  
Sbjct: 144 DAMDIVLRRMTQLGCIPNVFSYNILLKGLC-----DDNR--SQEALELLQMMPDDGGD-- 194

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
             C PDV+SY ++IN   K+  +DKA   + +M  RGI+P+VV YSS+I   C    +D 
Sbjct: 195 --CPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDK 252

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392
           A ++  S+   G +P+  +YN++++ Y    + +EA+    +M S GV P          
Sbjct: 253 AMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEP---------- 302

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
                       D+  +N L+D LCK+ R   A ++F  + + G +P + TY  ++ G  
Sbjct: 303 ------------DVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYA 350

Query: 453 IEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEI 494
            +G + + + LL  M                    K  +  +A+ +  KM ++ + PD +
Sbjct: 351 TKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTV 410

Query: 495 TVSILEELLNKDENCHECMNLLPSFL 520
           T   +  +L K     + M      +
Sbjct: 411 TYGTVIGILCKSGRVEDAMRYFEQMI 436



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 118/481 (24%), Positives = 199/481 (41%), Gaps = 71/481 (14%)

Query: 39  LHSNSVS-TVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGAL 97
           +HS+ V   V     L+ YL +N +  E     A   F+ M      P + ++ +LL   
Sbjct: 295 MHSDGVEPDVVTYNSLMDYLCKNGRCTE-----ARKMFDSMTKRGLKPEITTYGTLLQGY 349

Query: 98  AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDV 157
           A K   V    L + +   G+ P+    +IL+  + K   V  A +   ++ ++  +PD 
Sbjct: 350 ATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDT 409

Query: 158 VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRV 217
           VT G +I  LC  G+  +A   F + +       + P  I Y S+I  LC     +K + 
Sbjct: 410 VTYGTVIGILCKSGRVEDAMRYFEQMI----DERLSPGNIVYNSLIHSLCIFDKWDKAKE 465

Query: 218 LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277
           L L+M  RGI  D   +NS+I  +C        +G    + +L +  V     +GV   P
Sbjct: 466 LILEMLDRGICLDTIFFNSIIDSHC-------KEGRVIESEKLFDLMV----RIGV--KP 512

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           D+++Y ++I+  C    +D+A +L   M S G+ PD V Y++LI+GYC + R++DA  LF
Sbjct: 513 DIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLF 572

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------- 383
             +ES G  PD  +YN ++    +  +   A  LY  +   G + +              
Sbjct: 573 REMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKN 632

Query: 384 -----------NSCIL-----------------------EAAELFRTLHNTKFELDLTVF 409
                      N C+                        EA +LF  L       D+  +
Sbjct: 633 NLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTY 692

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           + + + L +   L    +LF  +   G   N      ++  L   G I +A   L  ++E
Sbjct: 693 SLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDE 752

Query: 470 K 470
           K
Sbjct: 753 K 753


>gi|255585035|ref|XP_002533226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526958|gb|EEF29158.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 119/415 (28%), Positives = 203/415 (48%), Gaps = 57/415 (13%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLS-------ERLNTI--- 116
           +L++A+     M      P   S+N++L  L        ++C S       ++LN +   
Sbjct: 207 KLSEAIGLIGKMKDFSCFPDNASYNTILDVL--------WLCRSGKTDQSIDKLNELLES 258

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL+P  ++ N +++ +C+   V  AF    +++ K F PD+ T   L+RGLC +G    A
Sbjct: 259 GLVPHQITYNTIIHGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNA 318

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             LF  +++   +   I + + Y +II GLCK+G   +   L  +M+ + + PD + YN+
Sbjct: 319 LKLFNTWIS---KGKAI-DAVTYNTIISGLCKEGRFEEAFDLLAEMEEKKLGPDCYTYNA 374

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           ++    CA+   DA+G    A +   + V  + +      PD+ +   ++  LC + ++D
Sbjct: 375 IL----CAL--ADAEGQVEKAFQFRNKMVEKSFK------PDLFTCNILLRGLCTEGMLD 422

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE-GCIPDTSSYNTL 355
            A +LF    S+G   D V Y+++I G C  GR ++A  L   +E + G +PD ++YNT+
Sbjct: 423 NALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKNGLVPDQTTYNTI 482

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDG 415
           I  Y +  +VE+A     +M+    +PD                      L   N L+ G
Sbjct: 483 ILGYCREGQVEKAFQFRNKMVEKSFKPD----------------------LFTCNILLRG 520

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           LC+   L  A +LF      G   + VTY  +I GLC EG  E+A+DLL +M+EK
Sbjct: 521 LCREGMLVKALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMKEK 575



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 114/401 (28%), Positives = 180/401 (44%), Gaps = 62/401 (15%)

Query: 175 EASGLFTKFVAFDCRPNVI---------------PNVICYASIIDGLCKDGFVNKVRV-- 217
            A+ +F +      +PN++               P+V    +I   + K G  NK+    
Sbjct: 153 HAAQIFNRMKRLHLKPNLLTRNTLINALVRYPSKPSVCLSKAIFTNVIKFGVKNKLSEAI 212

Query: 218 -LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            L   MK    +PD   YN+++ V      W    G T  +++   E +    E G++  
Sbjct: 213 GLIGKMKDFSCFPDNASYNTILDVL-----WLCRSGKTDQSIDKLNELL----ESGLV-- 261

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P  ++Y +II+  C++  V+KA +    M  +   PD+   + L+ G C  G +D+A KL
Sbjct: 262 PHQITYNTIIHGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKL 321

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NS--CILEA 390
           F +  S+G   D  +YNT+I+   K  + EEA  L  EM    + PD    N+  C L  
Sbjct: 322 FNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKKLGPDCYTYNAILCALAD 381

Query: 391 AE-------LFRT-LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
           AE        FR  +    F+ DL   N L+ GLC    L +A +LF      G   + V
Sbjct: 382 AEGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAV 441

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEEK-----------------IRE--CLKAIELLHK 483
           TY  +I GLC EG  E+A+DLL +MEEK                  RE    KA +  +K
Sbjct: 442 TYNTIISGLCKEGRFEEAFDLLAEMEEKNGLVPDQTTYNTIILGYCREGQVEKAFQFRNK 501

Query: 484 MAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQ 524
           M ++  KPD  T +IL   L ++    + + L  +++S+ +
Sbjct: 502 MVEKSFKPDLFTCNILLRGLCREGMLVKALKLFNTWISKGK 542



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 142/301 (47%), Gaps = 19/301 (6%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L++AL  FN  I         ++N+++  L  +  +     L   +    L PD  + N 
Sbjct: 315 LDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKKLGPDCYTYNA 374

Query: 128 LMNCFCKMIG-VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           ++       G V  AF    +++ K F PD+ T   L+RGLC +G    A  LF  +++ 
Sbjct: 375 ILCALADAEGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWIS- 433

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR-GIYPDAFVYNSLIRVYCCAV 245
             +   I + + Y +II GLCK+G   +   L  +M+ + G+ PD   YN++I  YC   
Sbjct: 434 --KGKAI-DAVTYNTIISGLCKEGRFEEAFDLLAEMEEKNGLVPDQTTYNTIILGYC--- 487

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
                +G    A +   + V  + +      PD+ +   ++  LC++ ++ KA +LF   
Sbjct: 488 ----REGQVEKAFQFRNKMVEKSFK------PDLFTCNILLRGLCREGMLVKALKLFNTW 537

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
            S+G   D V Y+++I G C  GR ++A  L   ++ +   PD  +YN ++ + +   ++
Sbjct: 538 ISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMKEKKLGPDCYTYNAILCALADAGRM 597

Query: 366 E 366
           E
Sbjct: 598 E 598



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 110/301 (36%), Gaps = 91/301 (30%)

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI------------ 362
           V+  + I  Y    R   A ++F  ++     P+  + NTLIN+  +             
Sbjct: 136 VILDTSIGAYVSCNRPHHAAQIFNRMKRLHLKPNLLTRNTLINALVRYPSKPSVCLSKAI 195

Query: 363 ----------EKVEEALSLYGEMISMGVRPDNS---CILEAAELFRT------------- 396
                      K+ EA+ L G+M      PDN+    IL+   L R+             
Sbjct: 196 FTNVIKFGVKNKLSEAIGLIGKMKDFSCFPDNASYNTILDVLWLCRSGKTDQSIDKLNEL 255

Query: 397 ----------LHNT------------------------KFELDLTVFNCLVDGLCKSWRL 422
                      +NT                         F+ DL   N L+ GLC    L
Sbjct: 256 LESGLVPHQITYNTIIHGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGML 315

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI----------- 471
            +A +LF      G   + VTY  +I GLC EG  E+A+DLL +MEEK            
Sbjct: 316 DNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKKLGPDCYTYNAI 375

Query: 472 --------RECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
                    +  KA +  +KM ++  KPD  T +IL   L  +      + L  +++S+ 
Sbjct: 376 LCALADAEGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKG 435

Query: 524 Q 524
           +
Sbjct: 436 K 436


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 117/374 (31%), Positives = 181/374 (48%), Gaps = 52/374 (13%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           +   +  +G+ P+  + N LM+ +CK+     A      +L +   PDVVT G LI GLC
Sbjct: 239 MHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLC 298

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
             G+   A  LF   + F    +V PN+  Y S+ID  CK G V++   LFL+++   + 
Sbjct: 299 KFGEMKAARNLFVNMIKF----SVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVS 354

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           PD F Y+ LIR  C     E+A GN     ++ +E +  N           ++Y S+I+ 
Sbjct: 355 PDVFTYSILIRGLCSVSRTEEA-GNIFE--KMTKEGILANS----------VTYNSLIDG 401

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
            CK+  +DKA E+   M   G+ P+V+ +S+LIDGYC +  +  A  ++  +  +   PD
Sbjct: 402 CCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPD 461

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTV 408
             +Y  +I+ + K   ++EAL LY +M+  G+ P+   I                     
Sbjct: 462 VVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTI--------------------- 500

Query: 409 FNCLVDGLCKSWRLRSAWELFK-----KLPR-----YGPEP---NVVTYTVMICGLCIEG 455
            +CL+DGLCK  ++  A ELF      + PR      G +P   N V YT +I GLC +G
Sbjct: 501 -SCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDG 559

Query: 456 GIEKAYDLLPDMEE 469
              KA  L  DM  
Sbjct: 560 QFSKAVKLFSDMRR 573



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 156/319 (48%), Gaps = 43/319 (13%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P+VI + ++IDG C+ G + + + +F +M+ +GI P   VY  LIR  C     E+A   
Sbjct: 180 PSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEA--- 236

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
                   E       E+GV  +P+V +Y ++++  CK     +A  L+ DM   G++PD
Sbjct: 237 --------ESMHRAMREVGV--YPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPD 286

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           VV +  LIDG C  G +  AR LFV++      P+ + YN+LI++Y K+  V EA++L+ 
Sbjct: 287 VVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFL 346

Query: 374 EMISMGVRPD--NSCIL-----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           E+    V PD     IL           EA  +F  +       +   +N L+DG CK  
Sbjct: 347 ELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEG 406

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIEL 480
           ++  A E+  ++   G EPNV+T++ +I G C                 KIR    A+ +
Sbjct: 407 KMDKALEICSQMTENGVEPNVITFSTLIDGYC-----------------KIRNLQAAMGI 449

Query: 481 LHKMAKRYVKPDEITVSIL 499
             +M  + + PD +T + +
Sbjct: 450 YSEMVIKSLSPDVVTYTAM 468



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 155/371 (41%), Gaps = 81/371 (21%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGAL-------AGKKYYVNFICLSERLNTIGLLPDF 122
            AL  +  M+     P + +F  L+  L       A +  +VN I  S       + P+ 
Sbjct: 270 QALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFS-------VTPNI 322

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
              N L++ +CK+  VS+A      + R   SPDV T   LIRGLC   +  EA  +F K
Sbjct: 323 AVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEK 382

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
                 +  ++ N + Y S+IDG CK+G ++K   +   M   G+ P+   +++LI  YC
Sbjct: 383 MT----KEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYC 438

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
              N +       AA+ ++ E V  +        PDV++Y ++I+  CK   + +A +L+
Sbjct: 439 KIRNLQ-------AAMGIYSEMVIKS------LSPDVVTYTAMIDGHCKYGSMKEALKLY 485

Query: 303 LDMKSRGIIPDV------------------------------------------------ 314
            DM   GI P+                                                 
Sbjct: 486 SDMLDNGITPNCYTISCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLTNH 545

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           V Y++LI G C  G+   A KLF  +   G  PD   Y  ++    +++ +   + L+ +
Sbjct: 546 VAYTALIHGLCQDGQFSKAVKLFSDMRRYGLQPDEVIYVVMLRGLFQVKYI--LMMLHAD 603

Query: 375 MISMGVRPDNS 385
           M+  GV P+++
Sbjct: 604 MLKFGVIPNSA 614


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 129/441 (29%), Positives = 206/441 (46%), Gaps = 57/441 (12%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A+     M+     P   ++NS++            I   +++ + G+ PD V+ N 
Sbjct: 139 VDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNS 198

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           LM+  CK    ++A      + ++   P++ T G L++G   +G   E  GL    V   
Sbjct: 199 LMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNG 258

Query: 188 CRPN-------------------------------VIPNVICYASIIDGLCKDGFVNKVR 216
             PN                               + PN + Y ++I  LCK G V    
Sbjct: 259 IHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAM 318

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
           + F  M   G+ P   VYNSLI   C    WE A+       EL  E ++       IC 
Sbjct: 319 LYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAE-------ELILEMLDRG-----IC- 365

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
            + + + SII+S CK+  V ++++LF  M   G+ PD++ YS+LIDGYCL G++D+A KL
Sbjct: 366 LNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKL 425

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCILE---- 389
             S+ S G  PD  +Y+TLIN Y KI ++++AL L+ EM S GV PD    + IL+    
Sbjct: 426 LASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQ 485

Query: 390 ------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                 A EL+  +  +  +L+L+ +N ++ GLCK+     A  +F+ L     +    T
Sbjct: 486 TRRTAAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEART 545

Query: 444 YTVMICGLCIEGGIEKAYDLL 464
           + +MI  L   G  ++A DL 
Sbjct: 546 FNIMIDALLKVGRNDEAKDLF 566



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 113/400 (28%), Positives = 184/400 (46%), Gaps = 61/400 (15%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ V+ N ++   CK   V  A   L  +++    PD +T   ++ G C  G+  EA  +
Sbjct: 121 PNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAI-V 179

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F K +  D    V P+V+ Y S++D LCK+G   + R +F  M  RG+ P+   Y +L++
Sbjct: 180 FLKKMRSD---GVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQ 236

Query: 240 VYCCAVNWEDAKGNTSAALELHE--EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
            Y         KG   A +E+H   + +  NG      HP+   +  ++ +  K   V++
Sbjct: 237 GYA-------TKG---ALVEMHGLLDLMVRNG-----IHPNHYVFSILVCAYAKQEKVEE 281

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A  +F  M+ +G+ P+ V Y ++I   C  GR++DA   F  +  EG  P    YN+LI+
Sbjct: 282 AMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIH 341

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
                 K E A  L  EM+  G+     C+           NT F      FN ++D  C
Sbjct: 342 GLCTCNKWERAEELILEMLDRGI-----CL-----------NTIF------FNSIIDSHC 379

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE-------- 469
           K  R+  + +LF  + R G +P+++TY+ +I G C+ G +++A  LL  M          
Sbjct: 380 KEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCV 439

Query: 470 ----------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                     KI     A+ L  +M    V PD IT +I+
Sbjct: 440 TYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNII 479



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 153/332 (46%), Gaps = 25/332 (7%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           KSG VE  DA+ +F  MI    +P    +NSL+  L     +     L   +   G+  +
Sbjct: 310 KSGRVE--DAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLN 367

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            +  N +++  CK   V ++      ++R    PD++T   LI G C+ GK  EA+ L  
Sbjct: 368 TIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLA 427

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
             V+   +P+ +     Y+++I+G CK   +    VLF +M+  G+ PD   YN +++  
Sbjct: 428 SMVSVGMKPDCVT----YSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGL 483

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
                       T+AA EL+        +L      ++ +Y  I++ LCK+ L D A  +
Sbjct: 484 F-------QTRRTAAAKELYVGITKSGRQL------ELSTYNIILHGLCKNKLTDDALRM 530

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F ++    +  +   ++ +ID    +GR D+A+ LFV+  S G +P+  +Y  +  +   
Sbjct: 531 FQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIG 590

Query: 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAEL 393
              +EE   L+  M       DN C +++  L
Sbjct: 591 QGLLEELDQLFLSM------EDNGCTVDSGML 616



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 128/283 (45%), Gaps = 28/283 (9%)

Query: 193 IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG--IYPDAFVYNSLIRVYCCAVNWEDA 250
           IP+V  Y  +++GLC +    +   L   M   G    PD   Y+++I       N    
Sbjct: 48  IPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVI-------NGFFK 100

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
           +G+       + E ++          P+V++Y SII +LCK   VDKA E+   M   G+
Sbjct: 101 EGDLDKTYSTYNEMLDQR------ISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGV 154

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
           +PD + Y+S++ G+C  G+  +A      + S+G  PD  +YN+L++   K  +  EA  
Sbjct: 155 MPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARK 214

Query: 371 LYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
           ++  M   G++P+                ++E   L   +       +  VF+ LV    
Sbjct: 215 IFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYA 274

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
           K  ++  A  +F K+ + G  PN VTY  +I  LC  G +E A
Sbjct: 275 KQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDA 317



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 101/229 (44%), Gaps = 42/229 (18%)

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG--CIPDTSSYN 353
           + A+ +F ++  RGI PDV  Y+ L++G C   R  +A +L   +  +G  C PD  SY+
Sbjct: 34  EDARHVFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLV 413
           T+IN + K   +++  S Y EM+   + P+                      +  +N ++
Sbjct: 93  TVINGFFKEGDLDKTYSTYNEMLDQRISPN----------------------VVTYNSII 130

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
             LCK+  +  A E+   + + G  P+ +TY  ++ G C  G                 +
Sbjct: 131 AALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSG-----------------Q 173

Query: 474 CLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
             +AI  L KM    V+PD +T + L + L K+  C E   +  S   R
Sbjct: 174 PKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKR 222


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 145/520 (27%), Positives = 244/520 (46%), Gaps = 62/520 (11%)

Query: 4   SSPATSRTAFKVKPSSSLRNSKKPISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSKS 63
           SS  T     K    S++  S KPIS       + L S    + +E+T++L  +S     
Sbjct: 35  SSSETGSNNNKTSSRSNIGQSSKPIS----RVQTPLLSFINYSTQEQTQILLSVS----- 85

Query: 64  GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV 123
                 D+ C  + ++ +    +  +  + LG  A K           R +  GL     
Sbjct: 86  -----GDSFCANSIIVDILVWAYAKNLRTRLGFEAFK-----------RASDYGLKLSVT 129

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           S N LM+   K+  + D       ++R+   P +++   +I GLC  GK  +A  +    
Sbjct: 130 SCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDM 189

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKV---RVLFLDMKGRGIYPDAFVYNSLIRV 240
                   V  NVI Y ++IDG CK G + K+     +  +M+  GI P+   +N LI  
Sbjct: 190 KV----RGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDG 245

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
           +C          N SAA+++  E +N  G       P+V++Y S+IN LC +  V++A  
Sbjct: 246 FC-------KDKNVSAAMKVFAE-MNRQG-----VKPNVVTYNSLINGLCNNGKVNEATA 292

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           L   M +  + P+++ +++L++G+C    +  A +LF  +  +G  P+ ++YN LI++Y 
Sbjct: 293 LRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYC 352

Query: 361 KIEKVEEALSLYGEMISMGVRPDNS---CI---------LEAAELFRTLHNTK-FELDLT 407
           K E +E+A +LY  M+  GV PD S   C+         LEAA    +  +TK  + DL 
Sbjct: 353 KDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLI 412

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            +N L+D LC    ++ A  L  ++ R G +P+ +TY  MI G C EG +  A +L   M
Sbjct: 413 TYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQM 472

Query: 468 EEKIRECLKAIELLHKMAKRYVKPDEI--TVSILEELLNK 505
           E+  R  L  +   + + K + K D++     +L E+L K
Sbjct: 473 EKVGR--LANVATYNVLIKGFCKKDKLEDANGLLNEMLEK 510



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 115/370 (31%), Positives = 178/370 (48%), Gaps = 48/370 (12%)

Query: 99  GKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVV 158
           GK Y  + I    R +  G+ P+ V+ NIL++ FCK   VS A      + R+   P+VV
Sbjct: 215 GKMYKADAILKEMRAD--GICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVV 272

Query: 159 TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVL 218
           T   LI GLC  GK  EA+ L  + V   C   + PN+I + ++++G CK+  V +   L
Sbjct: 273 TYNSLINGLCNNGKVNEATALRDQMVN-SC---LKPNIITHNALLNGFCKNKMVKQAGEL 328

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD 278
           F DM  +GI P+   YN LI  YC   N EDA         L+   + G G    +C PD
Sbjct: 329 FDDMPKQGITPNVTTYNILIDAYCKDENMEDA-------FALYRIML-GKG----VC-PD 375

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
           V +Y  +I  LC+   ++ A+ L  +M ++ +  D++ Y+ LID  C  G +  A +L  
Sbjct: 376 VSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLD 435

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398
            +  +G  P   +YNT+I+ Y K   +  AL+L  +M  +G                 L 
Sbjct: 436 EMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVG----------------RLA 479

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
           N      +  +N L+ G CK  +L  A  L  ++   G  PN +TY ++      E  +E
Sbjct: 480 N------VATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIV-----TEEMME 528

Query: 459 KAYDLLPDME 468
           K +  +PD+E
Sbjct: 529 KGF--VPDIE 536



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 145/309 (46%), Gaps = 69/309 (22%)

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD--- 332
            P ++S+  +IN LCK   ++KA ++  DMK RG+  +V+ Y++LIDGYC MG+I     
Sbjct: 160 EPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYK 219

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------- 383
           A  +   + ++G  P+  ++N LI+ + K + V  A+ ++ EM   GV+P+         
Sbjct: 220 ADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLIN 279

Query: 384 ----NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
               N  + EA  L   + N+  + ++   N L++G CK+  ++ A ELF  +P+ G  P
Sbjct: 280 GLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITP 339

Query: 440 NVVTYTVMI-----------------------------------CGLCIEGGIEKAYDLL 464
           NV TY ++I                                    GLC +G +E A +L+
Sbjct: 340 NVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLV 399

Query: 465 PDMEEK------------------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
            +M+ K                    E  KA+ LL +M ++ +KP ++T + + +   K+
Sbjct: 400 SEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKE 459

Query: 507 ENCHECMNL 515
            N    +NL
Sbjct: 460 GNLRAALNL 468


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 125/423 (29%), Positives = 210/423 (49%), Gaps = 33/423 (7%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G +E  + L F + M +    P   +FNSL+  L    +  + + + + +   G  PD
Sbjct: 293 KEGRIE--EVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPD 350

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             + N L+   CK+  V +A   L +++ + FSP+ VT   LI  LC + +  EA+ L  
Sbjct: 351 IFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELAR 410

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
              +      ++P+V  + S+I GLC          LF +MK +G +PD F YN LI   
Sbjct: 411 VLTS----KGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSL 466

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C       ++G    AL L +E  +        C  +V++Y ++I+  CK+  +++A+E+
Sbjct: 467 C-------SRGRLEEALSLLKEMESSG------CSRNVVTYNTLIDGFCKNKRIEEAEEI 513

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F +M+ +GI  +VV Y++LIDG C   R+++A +L   +  EG  PD  +YN+L+  + +
Sbjct: 514 FDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCR 573

Query: 362 IEKVEEALSLYGEMISMGVRPDN----SCILE---------AAELFRTLHNTKFELDLTV 408
              +++A  +   M S G  PD+    + IL          A+ L RT+      L    
Sbjct: 574 AGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQT 633

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG-IEKAYDLLPDM 467
           +N ++  L +  R   A  LF+++   G  P+ VTY V+  GLC  GG I +A D L +M
Sbjct: 634 YNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGGGPIGEAVDFLVEM 693

Query: 468 EEK 470
            +K
Sbjct: 694 TDK 696



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/403 (29%), Positives = 191/403 (47%), Gaps = 30/403 (7%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           M+     P + +FN L+ AL         I + E + + GL PD  +   LM  F +   
Sbjct: 202 MVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGN 261

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           ++ A     +++        VT+  L+ G C +G+  E       F+         P+  
Sbjct: 262 MNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEV----LSFIDEMSNEGFRPDRF 317

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            + S+++GLC+ G V     +   M   G  PD F YNSLI   C         G    A
Sbjct: 318 TFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLC-------KLGEVEEA 370

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
           +E+  + +  +        P+ ++Y ++I++LCK+  V++A EL   + S+GI+PDV  +
Sbjct: 371 VEILNQMILRD------FSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTF 424

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           +SLI G CL      A +LF  ++++GC PD  +YN LI+S     ++EEALSL  EM S
Sbjct: 425 NSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMES 484

Query: 378 MGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
            G   +             N  I EA E+F  +       ++  +N L+DGLCK+ R+  
Sbjct: 485 SGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEE 544

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           A +L  ++   G +P+  TY  ++   C  G I+KA D++  M
Sbjct: 545 AAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTM 587



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 165/395 (41%), Gaps = 80/395 (20%)

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG---------------------- 226
           +PN +P+ + Y  ++  L KDG    +R +  +MK  G                      
Sbjct: 98  QPNFVPSSVIYEEVLRKLGKDGSFGSMRRVLQEMKHTGCEIRRGTFLILIESYAKFELFD 157

Query: 227 --------------IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
                         +  DAF YN L+ V           GN    +E+    +   G   
Sbjct: 158 EAVAVVDIMEEEFGLKLDAFTYNFLLNVL--------VDGNKLKLVEIVNSRMVSRG--- 206

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
               PDV ++  +I +LC+   +  A  +  +M S G+ PD   +++L+ G+   G ++ 
Sbjct: 207 --IKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNG 264

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSC-- 386
           A ++   + + GC     + N L++ Y K  ++EE LS   EM + G RPD    NS   
Sbjct: 265 ALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVN 324

Query: 387 -------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
                  +  A E+   +    F+ D+  +N L+ GLCK   +  A E+  ++      P
Sbjct: 325 GLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSP 384

Query: 440 NVVTYTVMICGLCIEGGIEKAYDL---------LPDM---EEKIRE-CLK-----AIELL 481
           N VTY  +I  LC E  +E+A +L         LPD+      I+  CL      A+EL 
Sbjct: 385 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELF 444

Query: 482 HKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
            +M  +   PDE T ++L + L       E ++LL
Sbjct: 445 EEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLL 479



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 135/323 (41%), Gaps = 36/323 (11%)

Query: 47  VEEKTKLLKYLSENSKSGEV----ELNDALCFFN-YMIHMQ-----------PTPFMPSF 90
           VEE T+L + L+      +V     L   LC  N + + M+           P  F  ++
Sbjct: 402 VEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEF--TY 459

Query: 91  NSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILR 150
           N L+ +L  +      + L + + + G   + V+ N L++ FCK   + +A      +  
Sbjct: 460 NMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMEL 519

Query: 151 KVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDG 210
           +  S +VVT   LI GLC   +  EA+ L  + +       + P+   Y S++   C+ G
Sbjct: 520 QGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLM----EGLKPDKFTYNSLLTYFCRAG 575

Query: 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGE 270
            + K   +   M   G  PD+  Y +LI     A             +EL    +     
Sbjct: 576 DIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKA-----------GRVELASRLLRTVQL 624

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR- 329
            G++  P   +Y  +I +L ++    +A  LF +M  +G  PD V Y  +  G C  G  
Sbjct: 625 KGMVLAPQ--TYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGGGP 682

Query: 330 IDDARKLFVSIESEGCIPDTSSY 352
           I +A    V +  +G +PD SS+
Sbjct: 683 IGEAVDFLVEMTDKGFLPDFSSF 705



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 122/290 (42%), Gaps = 20/290 (6%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N+L+      K       + + +   G+  + V+ N L++  CK   V +A   + ++
Sbjct: 493 TYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQM 552

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
           L +   PD  T   L+   C  G   +A+ +     +  C P+ +     Y ++I GL K
Sbjct: 553 LMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSV----TYGTLILGLSK 608

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
            G V     L   ++ +G+      YN +I+           +  TS A+ L  E +   
Sbjct: 609 AGRVELASRLLRTVQLKGMVLAPQTYNPVIKALF-------REKRTSEAVRLFREMMEKG 661

Query: 269 GELGVICHPDVLSYCSIINSLCKDV-LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
                   PD ++Y  +   LC     + +A +  ++M  +G +PD   +  L +G C +
Sbjct: 662 DP------PDAVTYKVVFRGLCSGGGPIGEAVDFLVEMTDKGFLPDFSSFLMLAEGLCAL 715

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
              D   KL   +  +    D  S  ++I  + KI K ++AL+  G ++S
Sbjct: 716 SMEDTLIKLVNRVMKQANFSD--SEVSMIMGFLKIRKFQDALATLGRILS 763



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 80/176 (45%), Gaps = 14/176 (7%)

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
           K    +P  V+Y  ++      G     R++   ++  GC     ++  LI SY+K E  
Sbjct: 97  KQPNFVPSSVIYEEVLRKLGKDGSFGSMRRVLQEMKHTGCEIRRGTFLILIESYAKFELF 156

Query: 366 EEALSLYGEM-ISMGVRPD------------NSCILEAAELFRT-LHNTKFELDLTVFNC 411
           +EA+++   M    G++ D            +   L+  E+  + + +   + D+T FN 
Sbjct: 157 DEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNI 216

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           L+  LC++ ++R A  + +++  YG  P+  T+T ++ G   EG +  A  +   M
Sbjct: 217 LIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQM 272


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 119/384 (30%), Positives = 188/384 (48%), Gaps = 57/384 (14%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           + PD  + N +++  C+   V ++   L ++L++  S +  T    IRGLC  G+  EA 
Sbjct: 207 VFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAV 266

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            L  +  A+     V P+V+ Y +++ GLCKD  V +       M  +G  PD F YN++
Sbjct: 267 ALVERMGAY-----VAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTI 321

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           I  YC         G    A EL ++ V      G +  PD ++YCS+IN LC +  +++
Sbjct: 322 IDGYC-------KSGMLQEATELLKDAVFK----GFV--PDRVTYCSLINGLCAEGDIER 368

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A ELF + +++ + PD+VVY+SL+ G C  G I  A ++   +  EGC PD  +YN +IN
Sbjct: 369 ALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIIN 428

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
              K+  + +A  +  + I  G  P                      D+  FN L+DG C
Sbjct: 429 GLCKMGNISDAAVVMNDAIVKGYLP----------------------DVFTFNTLIDGYC 466

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKA 477
           K  +L SA +L +++  YG  P+V+TY  ++ GLC  G   KA ++    EE I   LK 
Sbjct: 467 KRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAG---KAKEVNETFEEMI---LKG 520

Query: 478 IELLHKMAKRYVKPDEITVSILEE 501
                       +P+ IT +IL E
Sbjct: 521 -----------CRPNAITYNILIE 533



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 110/400 (27%), Positives = 191/400 (47%), Gaps = 30/400 (7%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
            P + ++N+L+  L              R+   G +PD  + N +++ +CK   + +A  
Sbjct: 277 APDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATE 336

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
            L   + K F PD VT   LI GLC +G    A  LF +  A D +P+++     Y S++
Sbjct: 337 LLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLV----VYNSLV 392

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
            GLC+ G +     +  +M   G +PD + YN +I   C   N  DA      A+ +++ 
Sbjct: 393 KGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDA------AVVMNDA 446

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
            V G         PDV ++ ++I+  CK + +D A +L   M + GI PDV+ Y+S+++G
Sbjct: 447 IVKGY-------LPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNG 499

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            C  G+  +  + F  +  +GC P+  +YN LI ++ KI ++EEA  +   M   G+ PD
Sbjct: 500 LCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPD 559

Query: 384 -------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
                        N  +  A  LF+ L    +      FN L+        ++ A ++F 
Sbjct: 560 AVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFG 619

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           ++   G +P++ TY +++ GLC    +++AY  L +M  K
Sbjct: 620 EMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISK 659



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 174/383 (45%), Gaps = 42/383 (10%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P  P++N+++ AL    Y+     +  R+   G+ PD  +  + +  FC + G     + 
Sbjct: 104 PAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDARTHTVRLKSFC-LTGRPHVALR 162

Query: 145 LGRILRKVFSPDVVTLGC-LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
           L R L +          C ++RGL   G    A  LF + +  D    V P+V  + +++
Sbjct: 163 LLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEMLGRD----VFPDVATFNNVL 218

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
             LC+ G V +   L   +  RG+  + F  N  IR  C     ED  G    A+ L E 
Sbjct: 219 HALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLC-----ED--GRLEEAVALVE- 270

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
                  +G    PDV++Y +++  LCKD  V +A +    M ++G IPD   Y+++IDG
Sbjct: 271 ------RMGAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDG 324

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           YC  G + +A +L      +G +PD  +Y +LIN       +E AL L+ E  +  ++P 
Sbjct: 325 YCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKP- 383

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                                DL V+N LV GLC+   +  A ++  ++   G  P++ T
Sbjct: 384 ---------------------DLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWT 422

Query: 444 YTVMICGLCIEGGIEKAYDLLPD 466
           Y ++I GLC  G I  A  ++ D
Sbjct: 423 YNIIINGLCKMGNISDAAVVMND 445



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 120/472 (25%), Positives = 201/472 (42%), Gaps = 82/472 (17%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N    E ++  AL  FN        P +  +NSL+  L  +   ++ + +   +   G  
Sbjct: 358 NGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCH 417

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD  + NI++N  CKM  +SDA V +   + K + PDV T   LI G C + K   A  L
Sbjct: 418 PDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQL 477

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             +   +     + P+VI Y S+++GLCK G   +V   F +M  +G  P+A  YN LI 
Sbjct: 478 VERMWTY----GIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIE 533

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            +C     E+A G                                +I  +C+D       
Sbjct: 534 NFCKINQLEEASG--------------------------------VIVRMCQD------- 554

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
                    G++PD V +++LI G+C  G +D A  LF  ++ +G      ++N LI +Y
Sbjct: 555 ---------GLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAY 605

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
           S    ++ A  ++GEMIS G +P                      DL  +  LVDGLCK+
Sbjct: 606 SSKLNMQMAEKIFGEMISKGYKP----------------------DLYTYRILVDGLCKA 643

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIE 479
             +  A+    ++   G  P++ T+  M+  L +   + +A  ++  M  ++    + ++
Sbjct: 644 ANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAMNHRVSEAVAIIHIM-VRMGVVPEVVD 702

Query: 480 LLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLTR 531
            +    K+ +   +I V   EEL+ K    +    +L   +  N    KLTR
Sbjct: 703 TILSTDKKEIAAPKILV---EELMKKGHISYRAYEVLHEGVRDN----KLTR 747



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 141/337 (41%), Gaps = 65/337 (19%)

Query: 164 IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
           I+     G+   A   F +   F C P   P    Y +I+D L    + ++   +++ M 
Sbjct: 78  IQAYARAGRLRAAVDAFERMDLFAC-PPAAP---AYNAIMDALVNAAYHDQAHKVYVRML 133

Query: 224 GRGIYPDAFVYN----------------SLIR------------VYCCAVNWEDAKGNTS 255
             G+ PDA  +                  L+R             YC  V    A G+  
Sbjct: 134 AAGVAPDARTHTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGY 193

Query: 256 AALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV 315
            A  L +E       LG    PDV ++ +++++LC+   V ++  L   +  RG+  +  
Sbjct: 194 NARHLFDEM------LGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKF 247

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGC--IPDTSSYNTLINSYSKIEKVEEALSLYG 373
             +  I G C  GR+++A  L   +E  G    PD  +YNTL+    K  KV+EA    G
Sbjct: 248 TCNIWIRGLCEDGRLEEAVAL---VERMGAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLG 304

Query: 374 EMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
            M++ G  PD                     D T +N ++DG CKS  L+ A EL K   
Sbjct: 305 RMMNQGCIPD---------------------DFT-YNTIIDGYCKSGMLQEATELLKDAV 342

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
             G  P+ VTY  +I GLC EG IE+A +L  + + K
Sbjct: 343 FKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAK 379



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 59/276 (21%), Positives = 108/276 (39%), Gaps = 35/276 (12%)

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV--VYSSLIDGYCLMGRIDDARKLFV 338
           +Y ++I  L     +D         +S  + PD +  +Y + I  Y   GR+  A   F 
Sbjct: 37  AYRALIRELVSAGRLDDVDAALASARSH-LAPDSLQPLYVASIQAYARAGRLRAAVDAFE 95

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS---------CILE 389
            ++   C P   +YN ++++       ++A  +Y  M++ GV PD           C+  
Sbjct: 96  RMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDARTHTVRLKSFCLTG 155

Query: 390 ----AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
               A  L R+L     +     +  +V GL       +A  LF ++      P+V T+ 
Sbjct: 156 RPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEMLGRDVFPDVATFN 215

Query: 446 VMICGLCIEGGIEKAYDLLPDMEEKIRECLK------------------AIELLHKMAKR 487
            ++  LC +G + ++  LL  + ++     K                  A+ L+ +M   
Sbjct: 216 NVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVALVERMGA- 274

Query: 488 YVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
           YV PD +T + L   L KD    E    L   +++ 
Sbjct: 275 YVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQG 310


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 125/472 (26%), Positives = 221/472 (46%), Gaps = 64/472 (13%)

Query: 75  FNYMIHMQPTPFMPS-FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
           FN +  ++ + F P+ F  L+ A +        + +  +++   +LP   + N++++   
Sbjct: 113 FNVLSRLESSKFTPNVFGVLIIAFSEMGLVEEALWVYYKMD---VLPAMQACNMVLDGLV 169

Query: 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
           K       +   G ++ +  SP+VVT G LI G C QG F +A  LF + +       + 
Sbjct: 170 KKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMI----EKKIF 225

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P V+ Y  +I GLC +  +++   +F  M+  G+ P+ + YN+++  YC          +
Sbjct: 226 PTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYC-------KIAH 278

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
              ALEL++E + G+G L     P+V+++  +I+ LCK   +  A++  +DM S G++P+
Sbjct: 279 VKKALELYQEML-GDGLL-----PNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPN 332

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           + VY+ LIDGYC  G + +A  L   IE    +PD  +Y+ LI     ++++EEA  L  
Sbjct: 333 IFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQ 392

Query: 374 EMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
           EM   G  P+                         +N L+DG CK   +  A E+  ++ 
Sbjct: 393 EMKKKGFLPNA----------------------VTYNTLIDGYCKEGNMEKAIEVCSQMT 430

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEK------------------AYDLLPDMEEKIRECL 475
             G EPN++T++ +I G C  G +E                   AY  L D   K     
Sbjct: 431 EKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTK 490

Query: 476 KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEES 527
           +A  L  +M +  + P+  T+S L + L KD    + + L   FL++   ++
Sbjct: 491 EAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKL---FLAKTGTDT 539



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 171/359 (47%), Gaps = 39/359 (10%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           A   F+ MI  +  P +  +  L+  L G+        +   +   G+LP+  + N +M+
Sbjct: 212 AFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMD 271

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
            +CK+  V  A      +L     P+VVT G LI GLC   +   A        +F    
Sbjct: 272 GYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASF---- 327

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
            V+PN+  Y  +IDG CK G +++   L  +++   I PD F Y+ LI+  C     E+A
Sbjct: 328 GVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEA 387

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
            G       L +E +   G L     P+ ++Y ++I+  CK+  ++KA E+   M  +GI
Sbjct: 388 DG-------LLQE-MKKKGFL-----PNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGI 434

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
            P+++ +S+LIDGYC  G+++ A  L+  +  +G +PD  +Y  LI+ + K    +EA  
Sbjct: 435 EPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFR 494

Query: 371 LYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
           L+ EM   G+ P                      ++   +CL+DGLCK  R+  A +LF
Sbjct: 495 LHKEMQEAGLHP----------------------NVFTLSCLIDGLCKDGRISDAIKLF 531



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 156/339 (46%), Gaps = 26/339 (7%)

Query: 66  VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
             +  AL  +  M+     P + +F  L+  L      V+       + + G++P+    
Sbjct: 277 AHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVY 336

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           N L++ +CK   +S+A      I +    PDV T   LI+GLC   +  EA GL  +   
Sbjct: 337 NCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMK- 395

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
              +   +PN + Y ++IDG CK+G + K   +   M  +GI P+   +++LI  YC A 
Sbjct: 396 ---KKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKA- 451

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
                 G   AA+ L+ E V      G++  PDV++Y ++I+   KD    +A  L  +M
Sbjct: 452 ------GKMEAAMGLYTEMVIK----GLL--PDVVAYTALIDGHFKDGNTKEAFRLHKEM 499

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
           +  G+ P+V   S LIDG C  GRI DA KLF++        DT+   T     S  +  
Sbjct: 500 QEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGT----DTTGSKTNELDRSLYQMC 555

Query: 366 EEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL 404
             ALSL+      G+     C++   +LF T +  K  L
Sbjct: 556 SLALSLF-----RGISEPCICVIRVTKLFATNNQPKAHL 589



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 107/242 (44%), Gaps = 28/242 (11%)

Query: 226 GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSI 285
           G  P  F+  SLI +Y        A GN + A  + +E  + N          ++S+ S+
Sbjct: 661 GFEPIIFLQTSLISMY-------SATGNVADAHNMFDEIPSKN----------LISWTSV 703

Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
           I++   +   +KA +LF  M+   + PD+V  +  +     +G +D    +   I   G 
Sbjct: 704 ISAYVDNQRPNKALQLFRQMQMDDVQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGL 763

Query: 346 IPDTSSYNTLINSYSKIEKVEEA----LSLYGEMISMGVR---PDNSCILEAAELFRTL- 397
             D    N+LIN YSK  ++  A    L L  ++  MGV         + E  + FR++ 
Sbjct: 764 DTDLCLNNSLINMYSKCGEIGTARRFSLVLPNDVTFMGVLMACSHAGLVEEGKQHFRSMK 823

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
            +      ++ F C+VD LC++  L  A+E   K+P     PN V +  ++    ++G  
Sbjct: 824 EDYSLRPRISHFGCMVDLLCRAGLLTEAYEFILKMP---VRPNAVVWRTLLGACSLQGMW 880

Query: 458 EK 459
           +K
Sbjct: 881 DK 882


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 123/466 (26%), Positives = 213/466 (45%), Gaps = 58/466 (12%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N+L+   AG   Y         + ++ + PD  +   ++   C    V +A   L  +
Sbjct: 146 AYNTLV---AGYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDM 202

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
           L +   P VVT   L+  +C    F +A  +  +  A  C     PN++ Y  II+G+C+
Sbjct: 203 LHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGC----TPNIVTYNVIINGMCR 258

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           +G V+  R     +   G  PD   Y ++++  C A  WED +       EL  E +  N
Sbjct: 259 EGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVE-------ELFAEMMEKN 311

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                 C P+ +++  ++   C+  +V++A ++   M   G   +  + + +I+  C  G
Sbjct: 312 ------CMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQG 365

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS--- 385
           R+DDA +   ++ S GC PDT SY T++    + E+ E+A  L  EM+     P+     
Sbjct: 366 RVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFN 425

Query: 386 ---CIL-------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
              CIL       +A  L   +     E+++  +N LV+G C   R+ SA ELF  +P  
Sbjct: 426 TFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP-- 483

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL-------------------- 475
             +PN +TYT ++ GLC    ++ A +LL +M +K  +C                     
Sbjct: 484 -CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQK--DCAPNVVTFNVLVSFFCQKGLMD 540

Query: 476 KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
           +AIEL+ +M +    P+ IT + L + + KD N  E + LL   +S
Sbjct: 541 EAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVS 586



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 122/497 (24%), Positives = 219/497 (44%), Gaps = 91/497 (18%)

Query: 51  TKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLS 110
           T +++ L +  + GE     AL   + M+H    P + ++  LL A+     +   + + 
Sbjct: 180 TPIIRGLCDRGRVGE-----ALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVL 234

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           + +   G  P+ V+ N+++N  C+   V DA   L R+    F PD V+   +++GLC  
Sbjct: 235 DEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAA 294

Query: 171 GKFTEASGLFTK---------------FVAFDCRPNVIPNVI----------CYAS---- 201
            ++ +   LF +                V F CR  ++   I          C A+    
Sbjct: 295 KRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLC 354

Query: 202 --IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE 259
             +I+ +CK G V+       +M   G  PD   Y ++++  C A  WEDAK       E
Sbjct: 355 NIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAK-------E 407

Query: 260 LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSS 319
           L +E V  N      C P+ +++ + I  LC+  L+++A  L   M   G   ++V Y++
Sbjct: 408 LLKEMVRKN------CPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNA 461

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           L++G+C+ GR+D A +LF S+    C P+T +Y TL+      E+++ A  L  EM+   
Sbjct: 462 LVNGFCVQGRVDSALELFYSMP---CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKD 518

Query: 380 VRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
             P                      ++  FN LV   C+   +  A EL +++  +G  P
Sbjct: 519 CAP----------------------NVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTP 556

Query: 440 NVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           N++TY  ++ G+  +   E                 +A+ELLH +    V PD +T S +
Sbjct: 557 NLITYNTLLDGITKDCNSE-----------------EALELLHGLVSNGVSPDIVTYSSI 599

Query: 500 EELLNKDENCHECMNLL 516
             +L++++   E + + 
Sbjct: 600 IGVLSREDRVEEAIKMF 616



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 111/430 (25%), Positives = 192/430 (44%), Gaps = 38/430 (8%)

Query: 51  TKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLS 110
           T +LK L    +  +VE       F  M+     P   +F+ L+            I + 
Sbjct: 285 TTVLKGLCAAKRWEDVEE-----LFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVL 339

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           E+++  G   +    NI++N  CK   V DAF  L  +     SPD ++   +++GLC  
Sbjct: 340 EQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRA 399

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
            ++ +A  L  + V    R N  PN + + + I  LC+ G + +  +L   M   G   +
Sbjct: 400 ERWEDAKELLKEMV----RKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVN 455

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
              YN+L+  +C        +G   +ALEL            + C P+ ++Y +++  LC
Sbjct: 456 IVTYNALVNGFC-------VQGRVDSALELF---------YSMPCKPNTITYTTLLTGLC 499

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
               +D A EL  +M  +   P+VV ++ L+  +C  G +D+A +L   +   GC P+  
Sbjct: 500 NAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLI 559

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTL 397
           +YNTL++  +K    EEAL L   ++S GV PD                + EA ++F  +
Sbjct: 560 TYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIV 619

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
            +        ++N ++  LCK      A + F  +   G  PN +TY  +I GL  E  +
Sbjct: 620 QDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFL 679

Query: 458 EKAYDLLPDM 467
           ++  DLL ++
Sbjct: 680 KETRDLLREL 689



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 158/330 (47%), Gaps = 33/330 (10%)

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN 213
           +PDV     LIR LC +G+ ++A+    + +    R     +V  Y +++ G C+ G ++
Sbjct: 106 APDVYLCTKLIRNLCRRGRTSDAA----RVLRAAERSGTAVDVFAYNTLVAGYCRYGQLD 161

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
             R L   M    + PDA+ Y  +IR  C        +G    AL L ++ ++       
Sbjct: 162 AARRLIASMP---VAPDAYTYTPIIRGLC-------DRGRVGEALSLLDDMLHRG----- 206

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
            C P V++Y  ++ ++CK     +A E+  +M+++G  P++V Y+ +I+G C  GR+DDA
Sbjct: 207 -CQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDA 265

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---------- 383
           R+    + S G  PDT SY T++      ++ E+   L+ EM+     P+          
Sbjct: 266 REFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRF 325

Query: 384 ---NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
                 +  A ++   +       + T+ N +++ +CK  R+  A++    +  YG  P+
Sbjct: 326 FCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPD 385

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            ++YT ++ GLC     E A +LL +M  K
Sbjct: 386 TISYTTVLKGLCRAERWEDAKELLKEMVRK 415



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 139/311 (44%), Gaps = 20/311 (6%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DA      M+     P   +FN+ +  L  K        L E+++  G   + V+ N L+
Sbjct: 404 DAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALV 463

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           N FC    V  A      +  K   P+ +T   L+ GLC   +   A+ L  + +  DC 
Sbjct: 464 NGFCVQGRVDSALELFYSMPCK---PNTITYTTLLTGLCNAERLDAAAELLAEMLQKDC- 519

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
               PNV+ +  ++   C+ G +++   L   M   G  P+   YN+L+       +   
Sbjct: 520 ---APNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLL-------DGIT 569

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
              N+  ALEL    V+ NG       PD+++Y SII  L ++  V++A ++F  ++  G
Sbjct: 570 KDCNSEEALELLHGLVS-NG-----VSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLG 623

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
           + P  V+Y+ ++   C     D A   F  + S GC+P+  +Y TLI   +  + ++E  
Sbjct: 624 MRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETR 683

Query: 370 SLYGEMISMGV 380
            L  E+ S GV
Sbjct: 684 DLLRELCSRGV 694



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 101/235 (42%), Gaps = 36/235 (15%)

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A  L     SRG  PDV + + LI   C  GR  DA ++  + E  G   D  +YNTL+
Sbjct: 92  RAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLV 151

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRP-------------DNSCILEAAELFRTLHNTKFE 403
             Y +  +++ A  L   + SM V P             D   + EA  L   + +   +
Sbjct: 152 AGYCRYGQLDAARRL---IASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQ 208

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA--- 460
             +  +  L++ +CKS     A E+  ++   G  PN+VTY V+I G+C EG ++ A   
Sbjct: 209 PSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREF 268

Query: 461 ------YDLLPDMEEKIRECLKAI----------ELLHKMAKRYVKPDEITVSIL 499
                 Y   PD        LK +          EL  +M ++   P+E+T  +L
Sbjct: 269 LNRLSSYGFQPDTVSYT-TVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDML 322


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 111/367 (30%), Positives = 174/367 (47%), Gaps = 41/367 (11%)

Query: 104 VNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCL 163
           +NFI   E  N  G  PD  + N L+N  CK   V  A   +  +L++ + PDV T   +
Sbjct: 279 LNFI--QEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSV 336

Query: 164 IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
           I GLC  G+  EA  +  + +  DC PN +     Y ++I  LCK+  V +   L   + 
Sbjct: 337 ISGLCKLGEVKEAVEVLDQMITRDCSPNTV----TYNTLISTLCKENQVEEATELARVLT 392

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
            +GI PD   +NSLI+  C   N          A+EL EE  +        C PD  +Y 
Sbjct: 393 SKGILPDVCTFNSLIQGLCLTRNHR-------VAMELFEEMRSKG------CEPDEFTYN 439

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
            +I+SLC    +D+A  +   M+  G    V+ Y++LIDG+C   +  +A ++F  +E  
Sbjct: 440 MLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVH 499

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFE 403
           G   ++ +YNTLI+   K  +VE+A  L  +MI  G +PD                    
Sbjct: 500 GVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDK------------------- 540

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
                +N L+   C+   ++ A ++ + +   G EP++VTY  +I GLC  G +E A  L
Sbjct: 541 ---YTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKL 597

Query: 464 LPDMEEK 470
           L  ++ K
Sbjct: 598 LRSIQMK 604



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 190/396 (47%), Gaps = 29/396 (7%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + +FN L+ AL         I + E + + GL+PD  +   +M  + +   +  A   
Sbjct: 187 PDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRI 246

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
             +++    S   V++  ++ G C +G+  +A     +    D      P+   + ++++
Sbjct: 247 REQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQD---GFFPDQYTFNTLVN 303

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           GLCK G V     +   M   G  PD + YNS+I   C         G    A+E+ ++ 
Sbjct: 304 GLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLC-------KLGEVKEAVEVLDQM 356

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           +  +      C P+ ++Y ++I++LCK+  V++A EL   + S+GI+PDV  ++SLI G 
Sbjct: 357 ITRD------CSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 410

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM--------- 375
           CL      A +LF  + S+GC PD  +YN LI+S     K++EAL++  +M         
Sbjct: 411 CLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSV 470

Query: 376 ISMGVRPDNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
           I+     D  C      EA E+F  +       +   +N L+DGLCKS R+  A +L  +
Sbjct: 471 ITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQ 530

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +   G +P+  TY  ++   C  G I+KA D++  M
Sbjct: 531 MIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAM 566



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/441 (24%), Positives = 190/441 (43%), Gaps = 66/441 (14%)

Query: 113 LNTIGLLPDFVSLNILMNCFC-----KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGL 167
           ++  GL PD    N ++N        K++ +S A +++  I      PDV T   LI+ L
Sbjct: 145 IDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGI-----KPDVSTFNVLIKAL 199

Query: 168 CMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI 227
           C   +   A  +     ++     ++P+   + +++ G  ++G ++    +   M   G 
Sbjct: 200 CRAHQLRPAILMLEDMPSY----GLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGC 255

Query: 228 YPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIIN 287
                  N ++  +C        +G    AL   +E  N +G       PD  ++ +++N
Sbjct: 256 SWSNVSVNVIVHGFC-------KEGRVEDALNFIQEMSNQDG-----FFPDQYTFNTLVN 303

Query: 288 SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
            LCK   V  A E+   M   G  PDV  Y+S+I G C +G + +A ++   + +  C P
Sbjct: 304 GLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSP 363

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLT 407
           +T +YNTLI++  K  +VEEA  L   + S G+ PD                      + 
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPD----------------------VC 401

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            FN L+ GLC +   R A ELF+++   G EP+  TY ++I  LC +G +++A ++L  M
Sbjct: 402 TFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQM 461

Query: 468 EE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENC 509
           E                   K  +  +A E+  +M    V  + +T + L + L K    
Sbjct: 462 ELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRV 521

Query: 510 HECMNLLPSFLSRNQEESKLT 530
            +   L+   +   Q+  K T
Sbjct: 522 EDAAQLMDQMIMEGQKPDKYT 542



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 144/319 (45%), Gaps = 17/319 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E+ +A+   + MI    +P   ++N+L+  L  +        L+  L + G+LPD  + N
Sbjct: 345 EVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFN 404

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+   C       A      +  K   PD  T   LI  LC +GK  EA  +  +    
Sbjct: 405 SLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELS 464

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C      +VI Y ++IDG CK     +   +F +M+  G+  ++  YN+LI   C +  
Sbjct: 465 GC----ARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRR 520

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            EDA      A  + +  + G         PD  +Y S++   C+   + KA ++   M 
Sbjct: 521 VEDA------AQLMDQMIMEGQ-------KPDKYTYNSLLTHFCRGGDIKKAADIVQAMT 567

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           S G  PD+V Y +LI G C  GR++ A KL  SI+ +G      +YN +I    +  K  
Sbjct: 568 SNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTT 627

Query: 367 EALSLYGEMISMGVRPDNS 385
           EA++L+ EM+     P ++
Sbjct: 628 EAINLFREMLEQNEAPPDA 646



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 143/357 (40%), Gaps = 61/357 (17%)

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
           +PN  P    Y  I+  L + G  + ++ +  DMK          +  LI  Y       
Sbjct: 76  KPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESY------- 128

Query: 249 DAKGNTSAALELHEEFVN----GNGELGVICHPDVLSYCSIINSLC-----KDVLVDKAK 299
                  A  EL +E ++       E G+   PD   Y  ++N L      K V +  AK
Sbjct: 129 -------AQFELQDEILSVVDWMIDEFGL--KPDTHFYNRMLNLLVDGNSLKLVEISHAK 179

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
                M   GI PDV  ++ LI   C   ++  A  +   + S G +PD  ++ T++  Y
Sbjct: 180 -----MSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGY 234

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTK-FELD 405
            +   ++ AL +  +M+  G    N               + +A    + + N   F  D
Sbjct: 235 IEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPD 294

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
              FN LV+GLCK+  ++ A E+   + + G +P+V TY  +I GLC             
Sbjct: 295 QYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLC------------- 341

Query: 466 DMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
               K+ E  +A+E+L +M  R   P+ +T + L   L K+    E   L     S+
Sbjct: 342 ----KLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSK 394


>gi|4455203|emb|CAB36526.1| putative protein [Arabidopsis thaliana]
 gi|7269532|emb|CAB79535.1| putative protein [Arabidopsis thaliana]
          Length = 439

 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 126/437 (28%), Positives = 206/437 (47%), Gaps = 48/437 (10%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNT---IGLLPDFVSLNILMNCFCK 134
           M +  P P +  FN +L A+A  + Y   I L +R+     I + PD  + NIL+NCFC+
Sbjct: 1   MAYSYPLPSIVEFNKVLTAIAKMQMYDVVINLWKRIENAEGIEISPDLYTCNILVNCFCR 60

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
               S A   LG++++    PD+VT   L+ G C+     +A  +  +      + +V+ 
Sbjct: 61  CFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVV 120

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           + I    +ID LCK+  V     +   MK RGI P+   Y+SLI   C +    DA+   
Sbjct: 121 DTI----LIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRL 176

Query: 255 SAALELHEEFVNGN--------------GELGVI-----------CHPDVLSYCSIINSL 289
               E+  + +N N              G+L  +             P+V +Y S+I  L
Sbjct: 177 H---EMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGL 233

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
           C    VD+A ++   M S+G  P+VV YS+L +G+    R+DD  KL   +   G   +T
Sbjct: 234 CMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANT 293

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRT 396
            S NTLI  Y +  K++ AL ++G M S G+ P+             N  + +A   F  
Sbjct: 294 VSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEH 353

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           +  T+ +LD+  +  ++ G+CK+  ++ A++LF KL     EP+   YT+MI  L   G 
Sbjct: 354 MQKTRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLKFKRVEPDFKAYTIMIAELNRAGM 413

Query: 457 IEKAYDLLPDMEEKIRE 473
             +A  L    ++ +R+
Sbjct: 414 RTEADALNRFYQKHVRQ 430



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 77/172 (44%), Gaps = 37/172 (21%)

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELD 405
           +P    +N ++ + +K++       +Y  +I++  R +N+  +E +             D
Sbjct: 7   LPSIVEFNKVLTAIAKMQ-------MYDVVINLWKRIENAEGIEISP------------D 47

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
           L   N LV+  C+ ++  SA     K+ + G EP++VT + ++ G C+   I+ A  +  
Sbjct: 48  LYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAG 107

Query: 466 DMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
            ME+                  K R  + A+E+L +M  R + P+ +T S L
Sbjct: 108 QMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSL 159


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 136/505 (26%), Positives = 214/505 (42%), Gaps = 109/505 (21%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
            ++ + GL+P+ V  N  +   CK     +A      +  K   PD+V+   L+ G   +
Sbjct: 359 RKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASE 418

Query: 171 GKFTEASGLFTKF----VAFDCR---------------------------PNVIPNVICY 199
           G F +  GLF       +A DCR                             V P+V+ Y
Sbjct: 419 GWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTY 478

Query: 200 ASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE 259
           +++I    + G +      F  M  RGI P+  VY+S+I+ +C         G    A E
Sbjct: 479 STVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFC-------MHGGLVKAKE 531

Query: 260 LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSS 319
           L  E +N       I  PD++ + S+INSLCKD  V  A ++F  +   G  PDV+ ++S
Sbjct: 532 LVSEMINKG-----IPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTS 586

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           LIDGYCL+G++D A K+  ++E  G   D  +Y+TL++ Y K  ++ + L+L+ EM   G
Sbjct: 587 LIDGYCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKG 646

Query: 380 VRPD------------------------------------------------NSCILEAA 391
           V+P+                                                N+C  EA 
Sbjct: 647 VKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAI 706

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
            LF+ L     +  +T+ N +++ + K  R   A ELF  +   G  PN  TY VMI  L
Sbjct: 707 ILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINL 766

Query: 452 CIEGGIEKAYDLLPDMEEK------------IR------ECLKAIELLHKMAKRYVKPDE 493
             +G +E A ++   ME+             IR      E  KA   L K+  + +  + 
Sbjct: 767 LKDGAVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKAGNYLSKVDGKRILLEA 826

Query: 494 ITVSILEELLNKDENCHECMNLLPS 518
            T S++  L ++    HE M LLP+
Sbjct: 827 STTSLMLSLFSRKGKYHEDMKLLPA 851



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 120/468 (25%), Positives = 208/468 (44%), Gaps = 65/468 (13%)

Query: 53  LLKYLSENSKSGEVELNDALCFFNYMIHMQP--TPFMPSFNSLLGALAGKKYYVNFICLS 110
           +LK L +NS S       AL  F  M       +P + ++N+++     +        L 
Sbjct: 234 ILKGLCDNSMS-----QRALDLFQMMAKEGGACSPNVVAYNTVIHGFFKEGETGKACSLF 288

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
             +   G+ PD V+ N++++  CK   +  A + L ++      PD VT  C+I G    
Sbjct: 289 HEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATL 348

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G+  EA+ +F K  +      +IPN++   S +  LCK G   +   +F  M  +G  PD
Sbjct: 349 GRLKEAAKMFRKMKS----RGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPD 404

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
              Y +L+  Y     + D  G             N     G+    D   +  +I++  
Sbjct: 405 IVSYCTLLHGYASEGWFADMIG-----------LFNSMKSNGIA--ADCRVFNILIHAYA 451

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K  +VD A  +F +M+ +G+ PDVV YS++I  +  MGR+ DA + F  + + G  P+T+
Sbjct: 452 KRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTA 511

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGV-RPDNSCILEAAELFRTLHNTKFELDLTVF 409
            Y+++I  +     + +A  L  EMI+ G+ RP                      D+  F
Sbjct: 512 VYHSIIQGFCMHGGLVKAKELVSEMINKGIPRP----------------------DIVFF 549

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           N +++ LCK  R+  A ++F  +   G  P+V+T+T +I G C+ G ++KA+ +L  ME 
Sbjct: 550 NSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEV 609

Query: 470 ------------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                             K       + L  +M ++ VKP+ +T  I+
Sbjct: 610 VGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIM 657



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 136/501 (27%), Positives = 218/501 (43%), Gaps = 56/501 (11%)

Query: 2   PSSSPATSRTA-FKVKPSSSLRN-SKKPISLNSENEPSSLHSNSVSTVEEKTKLLKYLSE 59
           PS  P   R++ F+ K    LR+ S  P+S    +      ++  S            +E
Sbjct: 22  PSQRPCFRRSSYFQPKSGLGLRHCSTTPMSRVRLHRRLLSSTSPPSPSWSPRDAFAAATE 81

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMP--SFNSLLGALAGKKYYVNFICLSE------ 111
             ++G +  +DA   F+ +   Q TP +P  S N  L ALA  +   +  C+++      
Sbjct: 82  RVRAGTLSRDDAHHMFDELFR-QATP-VPGRSLNGFLTALA--RATSSSACITDGPALAL 137

Query: 112 ----RLNTIGLLPDFVSL-----NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGC 162
               R+      P  V L     +ILM+C C+        V  G ILR       +T   
Sbjct: 138 ALFNRVCREQAGPRVVPLTVHTYSILMDCCCRARRPDLGLVLFGCILRTGLKIHQITAST 197

Query: 163 LIRGLCMQGKFTEASG-LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD 221
           L++ LC   +  EA   L  +     C    +PNV  Y+ I+ GLC +    +   LF  
Sbjct: 198 LLKCLCYANRTEEAVNVLLHRMSELGC----VPNVFSYSIILKGLCDNSMSQRALDLFQM 253

Query: 222 M--KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDV 279
           M  +G    P+   YN++I  +         +G T  A  L  E        GV   PDV
Sbjct: 254 MAKEGGACSPNVVAYNTVIHGFF-------KEGETGKACSLFHEMT----RQGV--KPDV 300

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           ++Y  II++LCK   +DKA+ +   M + G  PD V Y+ +I GY  +GR+ +A K+F  
Sbjct: 301 VTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRK 360

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--NSCIL---EAAE-- 392
           ++S G IP+    N+ + S  K  + +EA  ++  M + G +PD  + C L    A+E  
Sbjct: 361 MKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGW 420

Query: 393 ------LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTV 446
                 LF ++ +     D  VFN L+    K   +  A  +F ++ + G  P+VVTY+ 
Sbjct: 421 FADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYST 480

Query: 447 MICGLCIEGGIEKAYDLLPDM 467
           +I      G +  A +    M
Sbjct: 481 VISAFSRMGRLTDAMEKFNQM 501



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 26/146 (17%)

Query: 381 RPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE-LFKKLPRYGPEP 439
           RPD   +L     F  +  T  ++     + L+  LC + R   A   L  ++   G  P
Sbjct: 172 RPDLGLVL-----FGCILRTGLKIHQITASTLLKCLCYANRTEEAVNVLLHRMSELGCVP 226

Query: 440 NVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL--------------------KAIE 479
           NV +Y++++ GLC     ++A DL   M ++   C                     KA  
Sbjct: 227 NVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFFKEGETGKACS 286

Query: 480 LLHKMAKRYVKPDEITVSILEELLNK 505
           L H+M ++ VKPD +T +++ + L K
Sbjct: 287 LFHEMTRQGVKPDVVTYNLIIDALCK 312


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 137/506 (27%), Positives = 223/506 (44%), Gaps = 53/506 (10%)

Query: 53  LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSER 112
           LL YL +N +  E        FF+ MI     P + ++  L+   A K          + 
Sbjct: 310 LLNYLCKNGRCREARF-----FFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDL 364

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +   GL PD    NI  + + K   +  A     ++ +   SP+VV  G LI  LC  G+
Sbjct: 365 MVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGR 424

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
             +A   F + +       V PN++ + S++ GLC      +   L  +M  +GI P+A 
Sbjct: 425 VDDAEVKFNQMI----NEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAV 480

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            +N+LI   C          N    +E     ++    +GV   PD  SY  +I+  C  
Sbjct: 481 FFNTLICNLC----------NVGRVME-GRRLIDLMEHVGV--RPDAFSYTPLISGYCLT 527

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
              D+A+++F  M S G+ P  V Y++L+ GYC   RIDDA  LF  +  +G  P   +Y
Sbjct: 528 GRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTY 587

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHN 399
           NT+++   + ++  EA  LY  MI+ G + D             ++C+ EA ++F++L +
Sbjct: 588 NTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCS 647

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
              +L++  F  ++  L K  R   A +LF  +P  G  PNVVTY ++   L  EG +E+
Sbjct: 648 KGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEE 707

Query: 460 AYDLLPDMEEK------------IRECL------KAIELLHKMAKRYVKPDEITVSILEE 501
              L   ME+             +R  L      +A   L K+ +R    +  T S+L  
Sbjct: 708 FDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSLLMS 767

Query: 502 LLNKDENCHECMNLLPSFLSRNQEES 527
           +   DE  H   +L   +   N+  S
Sbjct: 768 IFTSDEYQHHAKSLPEKYHFLNEANS 793



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 125/434 (28%), Positives = 196/434 (45%), Gaps = 57/434 (13%)

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           F  MI     P   ++N L+        +   + + E ++  GL PD  +   L+N  CK
Sbjct: 257 FQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCK 316

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN--- 191
                +A      ++RK   P V T G LI G   +G  +E        V     P+   
Sbjct: 317 NGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHI 376

Query: 192 ----------------------------VIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
                                       + PNV+ Y ++ID LCK G V+   V F  M 
Sbjct: 377 FNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMI 436

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
             G+ P+  V+NSL+   C    WE A+       EL  E ++       IC P+ + + 
Sbjct: 437 NEGVTPNIVVFNSLVYGLCTVDKWERAE-------ELVYEMLDQG-----IC-PNAVFFN 483

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
           ++I +LC    V + + L   M+  G+ PD   Y+ LI GYCL GR D+A K+F  + S 
Sbjct: 484 TLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSI 543

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCIL----------EA 390
           G  P   +YNTL++ Y    ++++A  L+ EM+  GV P     + IL          EA
Sbjct: 544 GLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEA 603

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
            EL+  + N+  + D+  +N +++GLCKS  +  A+++F+ L   G + N++T+T+MI  
Sbjct: 604 KELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGA 663

Query: 451 LCIEGGIEKAYDLL 464
           L   G  E A DL 
Sbjct: 664 LLKGGRKEDAMDLF 677



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 124/496 (25%), Positives = 208/496 (41%), Gaps = 80/496 (16%)

Query: 52  KLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALA------GKKYYVN 105
           +L + ++E ++S  + L+DAL  F+ ++H      + +FN LL A++        +  V+
Sbjct: 14  ELERIIAERARSRSLGLDDALKLFDELLHHARPASVRAFNHLLTAVSRARCSSASELAVS 73

Query: 106 FICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165
                 R  +  + P+  + +IL+  FC+M  +   F A G IL+  +  D + +  L++
Sbjct: 74  HFNRMVRECSDKVAPNLCTYSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLK 133

Query: 166 GLCMQGKFTEASG-LFTKFVAFDCRPNVI------------------------------- 193
           GLC   +  EA   L  +     C P+ +                               
Sbjct: 134 GLCHGKRVGEAMDVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGR 193

Query: 194 ---PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
              PNV+ Y+ +I+G   +G V+K   LFL+M  RGI PD   Y ++I   C A  ++ A
Sbjct: 194 RCPPNVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRA 253

Query: 251 KGNTSAALELHEEFVNGNGELGVICH------------------------PDVLSYCSII 286
           +G     ++    F   N     + H                        PD  +Y S++
Sbjct: 254 EGVFQQMID--NGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLL 311

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           N LCK+    +A+  F  M  +GI P V  Y  LI GY   G + +       +   G  
Sbjct: 312 NYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLS 371

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSCIL----EAAEL 393
           PD   +N   ++Y+K   +++A+ ++ +M   G+ P         D  C L    +A   
Sbjct: 372 PDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVK 431

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
           F  + N     ++ VFN LV GLC   +   A EL  ++   G  PN V +  +IC LC 
Sbjct: 432 FNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCN 491

Query: 454 EGGIEKAYDLLPDMEE 469
            G + +   L+  ME 
Sbjct: 492 VGRVMEGRRLIDLMEH 507



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 108/249 (43%), Gaps = 43/249 (17%)

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLD-MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           D ++   ++  LC    V +A ++ L  M   G +PD V Y+ L+ G C   R ++A +L
Sbjct: 124 DHIAINQLLKGLCHGKRVGEAMDVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALEL 183

Query: 337 FVSIESEG---CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAEL 393
              +  +    C P+  SY+ +IN +    +V++  +L+ EMI  G+ PD          
Sbjct: 184 LHMMADDHGRRCPPNVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPD---------- 233

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
                       +  +  ++DGLCK+     A  +F+++   G +PN  TY  +I G   
Sbjct: 234 ------------VVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLS 281

Query: 454 EGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECM 513
            G              K +E    +++L +M+ R +KPD  T   L   L K+  C E  
Sbjct: 282 IG--------------KWKE---VVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREAR 324

Query: 514 NLLPSFLSR 522
               S + +
Sbjct: 325 FFFDSMIRK 333


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 124/484 (25%), Positives = 213/484 (44%), Gaps = 87/484 (17%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           EL + L F   MI+    P + +  SL+              + E L   G +PD ++ N
Sbjct: 121 ELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYN 180

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +L+  +CK   +  A   L R+     +PDVVT   ++R LC  GK  EA  +  + +  
Sbjct: 181 VLIGGYCKSGEIDKALEVLERM---SVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQR 237

Query: 187 DCRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKV 215
           +C P+VI                               P+V+ Y  +I+G+CK+G +++ 
Sbjct: 238 ECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEA 297

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
                +M   G  P+   +N ++R  C    W DA+   S  L                C
Sbjct: 298 IKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKG-------------C 344

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
            P V+++  +IN LC+  L+ +A ++   M   G +P+ + Y+ L+ G+C   ++D A +
Sbjct: 345 SPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIE 404

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395
               + S GC PD  +YNTL+ +  K  KV+ A+ +  ++ S G  P             
Sbjct: 405 YLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPV------------ 452

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
                     L  +N ++DGL K  +   A EL +++ R G +P+++TY+ ++ GL  EG
Sbjct: 453 ----------LITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREG 502

Query: 456 GIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVS 497
            +++A  +  DME                   K ++  +AI+ L  M ++  KP E T +
Sbjct: 503 KVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYT 562

Query: 498 ILEE 501
           IL E
Sbjct: 563 ILIE 566



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 127/278 (45%), Gaps = 34/278 (12%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PDV++  S+I   C+     KA  +   +++ G +PDV+ Y+ LI GYC  G ID A ++
Sbjct: 139 PDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALEV 198

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------- 383
              +E     PD  +YNT++ S     K++EA+ +    +     PD             
Sbjct: 199 ---LERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCN 255

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
           +S + +A +L   +     + D+  +N L++G+CK  RL  A +    +P YG +PNV+T
Sbjct: 256 DSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVIT 315

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEK------------------IRECLKAIELLHKMA 485
           + +++  +C  G    A  LL DM  K                   R   +AI++L KM 
Sbjct: 316 HNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMP 375

Query: 486 KRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
           K    P+ ++ + L     +++     +  L   +SR 
Sbjct: 376 KHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRG 413



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 131/292 (44%), Gaps = 17/292 (5%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  L++A+ F N M      P + + N +L ++     +++   L   +   G  P  V+
Sbjct: 291 EGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVT 350

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            NIL+N  C+   +  A   L ++ +    P+ ++   L+ G C + K   A       V
Sbjct: 351 FNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMV 410

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
           +  C     P+++ Y +++  LCKDG V+    +   +  +G  P    YN++I      
Sbjct: 411 SRGC----YPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVI------ 460

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
            +     G T  A+EL EE             PD+++Y +++  L ++  VD+A ++F D
Sbjct: 461 -DGLTKVGKTEYAVELLEEMRRKG------LKPDIITYSTLLRGLGREGKVDEAIKIFHD 513

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           M+   I P  V Y++++ G C   +   A      +  +GC P  ++Y  LI
Sbjct: 514 MEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILI 565



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 115/254 (45%), Gaps = 17/254 (6%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DA    + M+    +P + +FN L+  L  K+     I + E++   G +P+ +S N L+
Sbjct: 331 DAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLL 390

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           + FC+   +  A   L  ++ +   PD+VT   L+  LC  GK   A  +  +  +  C 
Sbjct: 391 HGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCS 450

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
           P +I     Y ++IDGL K G       L  +M+ +G+ PD   Y++L+R          
Sbjct: 451 PVLIT----YNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLR-------GLG 499

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
            +G    A+++  +        G+   P  ++Y +I+  LCK     +A +    M  +G
Sbjct: 500 REGKVDEAIKIFHDME------GLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKG 553

Query: 310 IIPDVVVYSSLIDG 323
             P    Y+ LI+G
Sbjct: 554 CKPTEATYTILIEG 567


>gi|296087527|emb|CBI34116.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 132/491 (26%), Positives = 228/491 (46%), Gaps = 85/491 (17%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKV-FSPDVVTLGCLIRGLCMQGKFTE 175
           G +P  +S N LMN   +  G  D  VA+ R L+++  +P+  T G  I+ LC +G F E
Sbjct: 187 GFVPHIMSCNFLMNRLIEH-GKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEE 245

Query: 176 ASGLFTKFVAFDCRPNVIP-------------------------------NVICYASIID 204
           A  +F +       PN +                                +   Y ++I 
Sbjct: 246 AVDVFREMEEAGVNPNAVTCSTYIEGLCSHKRSDLGYEALRALRAANWPIDTFAYTAVIR 305

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           G C +  + +   +F+DM   GI PD ++Y +LI  YC A       GN   A+ LH + 
Sbjct: 306 GFCSEMKLKEAEDVFIDMVNEGIAPDGYIYGALIHAYCKA-------GNLLQAVALHNDM 358

Query: 265 VNGNGELGVI----------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
           V+   +  ++             D + Y  ++++LCK   V++A EL  +MK R +  DV
Sbjct: 359 VSNGIKTNLVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDV 418

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           V Y++LI GYCL G++ DA+ +F  ++  G  PD  +YN L+  +S+    +EAL L   
Sbjct: 419 VHYTTLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTYNILVGGFSRNGLKKEALELLDC 478

Query: 375 MISMGVRPDNS---------CILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
           + + G++P+++         C+    +      NT  +  L  ++ +VDG CK+   R A
Sbjct: 479 IGTQGLKPNSATHNRIIEGLCMAGKVKEAEAFLNTLEDKCLENYSAMVDGYCKANFTRKA 538

Query: 426 WELFKKLPRYG--------PEPNVVTYTVMICGLCIEGGIEKA---YDLL------PDME 468
           +ELF +L + G         EPN + Y  +I   C +G +++A   +D+L      PD+ 
Sbjct: 539 YELFSRLSKQGILRMLALDVEPNQIMYGKLIGAFCRDGDMKRAQLVFDMLVERGITPDVI 598

Query: 469 EKIR--------ECLK-AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519
                        CL+ A ++ + M +R +KPD IT +++ +  +K  N  + +NL    
Sbjct: 599 TYTMMINGYCRVNCLREARDIFNDMKERGIKPDVITYTVVLDGHSKTNNLQDAINLYDEM 658

Query: 520 LSRNQEESKLT 530
           ++R  +   +T
Sbjct: 659 IARGLQPDIVT 669



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 157/344 (45%), Gaps = 51/344 (14%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+  D V  NI+++  CK+  V +A   L  +  +  S DVV    LI G C+QGK  +A
Sbjct: 378 GIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDA 437

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             +F +         + P+++ Y  ++ G  ++G   +   L   +  +G+ P++  +N 
Sbjct: 438 KNMFEEMK----ERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNR 493

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           +I   C A   ++A           E F+N    L   C   + +Y ++++  CK     
Sbjct: 494 IIEGLCMAGKVKEA-----------EAFLN---TLEDKC---LENYSAMVDGYCKANFTR 536

Query: 297 KAKELFLDMKSRGII--------PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           KA ELF  +  +GI+        P+ ++Y  LI  +C  G +  A+ +F  +   G  PD
Sbjct: 537 KAYELFSRLSKQGILRMLALDVEPNQIMYGKLIGAFCRDGDMKRAQLVFDMLVERGITPD 596

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTV 408
             +Y  +IN Y ++  + EA  ++ +M   G++PD                      +  
Sbjct: 597 VITYTMMINGYCRVNCLREARDIFNDMKERGIKPD----------------------VIT 634

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
           +  ++DG  K+  L+ A  L+ ++   G +P++VTYT ++ G C
Sbjct: 635 YTVVLDGHSKTNNLQDAINLYDEMIARGLQPDIVTYTALLPGKC 678



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 154/347 (44%), Gaps = 47/347 (13%)

Query: 35  EPSSLHSNSVSTVEEKTKLLKYLSENSKSG----EVELN---DALC----------FFNY 77
           +  +LH++ VS    KT L+    E   SG    EV  N   DALC            N 
Sbjct: 350 QAVALHNDMVSN-GIKTNLVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNE 408

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           M   + +  +  + +L+     +   V+   + E +   G+ PD V+ NIL+  F +   
Sbjct: 409 MKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTYNILVGGFSRNGL 468

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
             +A   L  I  +   P+  T   +I GLCM GK  EA   F   +   C  N      
Sbjct: 469 KKEALELLDCIGTQGLKPNSATHNRIIEGLCMAGKVKEAEA-FLNTLEDKCLEN------ 521

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIY--------PDAFVYNSLIRVYCCAVNWED 249
            Y++++DG CK  F  K   LF  +  +GI         P+  +Y  LI  +C       
Sbjct: 522 -YSAMVDGYCKANFTRKAYELFSRLSKQGILRMLALDVEPNQIMYGKLIGAFC------- 573

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
             G+   A  + +  V    E G+   PDV++Y  +IN  C+   + +A+++F DMK RG
Sbjct: 574 RDGDMKRAQLVFDMLV----ERGIT--PDVITYTMMINGYCRVNCLREARDIFNDMKERG 627

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           I PDV+ Y+ ++DG+     + DA  L+  + + G  PD  +Y  L+
Sbjct: 628 IKPDVITYTVVLDGHSKTNNLQDAINLYDEMIARGLQPDIVTYTALL 674



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 85/196 (43%), Gaps = 13/196 (6%)

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           ++ +  +  + D+A +     K RG +P ++  + L++     G+ID A  ++  ++  G
Sbjct: 163 LVKAYVRVGMFDEAIDALFQTKRRGFVPHIMSCNFLMNRLIEHGKIDMAVAIYRHLKRLG 222

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---SCILE----------AA 391
             P+  +Y   I +  +    EEA+ ++ EM   GV P+    S  +E            
Sbjct: 223 LNPNDYTYGIFIKALCRKGNFEEAVDVFREMEEAGVNPNAVTCSTYIEGLCSHKRSDLGY 282

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
           E  R L    + +D   +  ++ G C   +L+ A ++F  +   G  P+   Y  +I   
Sbjct: 283 EALRALRAANWPIDTFAYTAVIRGFCSEMKLKEAEDVFIDMVNEGIAPDGYIYGALIHAY 342

Query: 452 CIEGGIEKAYDLLPDM 467
           C  G + +A  L  DM
Sbjct: 343 CKAGNLLQAVALHNDM 358


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 117/421 (27%), Positives = 205/421 (48%), Gaps = 33/421 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++++A   F+ MI     P + ++N+L+  L           + E +   G+ PD ++ +
Sbjct: 375 QIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYS 434

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +L++ FCK   V +A   L  +  +  +P+VVT   +I GLC   +  EA   F  F   
Sbjct: 435 VLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEA---FQMFDDM 491

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             +  ++P+ I Y ++IDGL + G   +   L   M      PD + +N       C +N
Sbjct: 492 ALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPD----PDTYAFN-------CCIN 540

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G+ S AL+++   +    EL ++  PD +++  +I   CK    ++A  LF +M 
Sbjct: 541 GLSKLGDVSRALQVYNRML----ELELV--PDKVTFNILIAGACKAGNFEQASALFEEMV 594

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           ++ + PDV+ + +LIDG C  G+++ AR +   + + G  P+  +YN L++   K  ++E
Sbjct: 595 AKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIE 654

Query: 367 EALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFELDLTVFNCLV 413
           EA     EM+S G  PD+             S   +A +L   L +  ++ D   +N LV
Sbjct: 655 EACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILV 714

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
           DGL KS +   A  + +++   G  P+VVTY  +I  LC  G +E+A  L  DM  ++  
Sbjct: 715 DGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSR 774

Query: 474 C 474
           C
Sbjct: 775 C 775



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 134/483 (27%), Positives = 222/483 (45%), Gaps = 50/483 (10%)

Query: 62   KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
            KSG +E  +A  F   M+     P   ++ SL+ AL       + + L   L + G  PD
Sbjct: 649  KSGRIE--EACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPD 706

Query: 122  FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             V+ NIL++   K      A   L  ++ K   PDVVT   LI  LC  G   EA  L  
Sbjct: 707  TVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHG 766

Query: 182  KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM--KGRGIYPDAFVYNSLIR 239
               +   R   +PNV+ Y+ +I+GLCK G +++ R L  +M  K   + P+   YNS + 
Sbjct: 767  DMSSRVSR-CCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLD 825

Query: 240  VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
              C        +   + A EL     +G+  +     PD +++ ++I+ LCK    D+A 
Sbjct: 826  GLC-------KQSMMAEACELMRSLRDGSLRV----SPDTVTFSTLIDGLCKCGQTDEAC 874

Query: 300  ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
             +F DM + G +P+VV Y+ L++G C   +++ A  +  S+  +G  PD  +Y+ L++++
Sbjct: 875  NVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAF 934

Query: 360  SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
             K   V+EAL L   M S G  P                      ++  FN ++DGLCKS
Sbjct: 935  CKASHVDEALELLHGMASRGCTP----------------------NVVTFNSIIDGLCKS 972

Query: 420  WRLRSAWELFKKLP-RYGPEPNVVTYTVMICGLCIEGGIEKA---YDLLPDMEEKIRECL 475
             +   A+++F  +  ++G  P+ +TY  +I GL   G   +A    D +PD +     C 
Sbjct: 973  DQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPDPDTYAFNCC 1032

Query: 476  --------KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEES 527
                         LH+M +  + PD++T +IL     K  N  +   L    +++N +  
Sbjct: 1033 INGLSKLGDVSRALHRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPD 1092

Query: 528  KLT 530
             +T
Sbjct: 1093 VMT 1095



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/431 (26%), Positives = 208/431 (48%), Gaps = 54/431 (12%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ P  V+ N ++N  CK   +         ++ +   PDVVT   LI  LC  G   EA
Sbjct: 211 GVAPTIVTYNTIINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEA 270

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM--KGRGIYPDAFVY 234
             L     +  C    +PNV+ Y+ +I+GLCK G +++ R L  +M  K   + P+   Y
Sbjct: 271 RRLHGDMSSRSC----VPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITY 326

Query: 235 NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294
           NS +   C        +  T+ A EL     +G+  +     PD +++ ++I+ LCK   
Sbjct: 327 NSFLDGLC-------KQSMTAEACELMRSLRDGSLRV----SPDTVTFSTLIDGLCKCGQ 375

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           +D+A  +F DM + G +P+V+ Y++L++G C   +++ A  +  S+  +G  PD  +Y+ 
Sbjct: 376 IDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSV 435

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           L++++ K  +V+EAL L   M S G  P                      ++  FN ++D
Sbjct: 436 LVDAFCKASRVDEALELLHGMASRGCTP----------------------NVVTFNSIID 473

Query: 415 GLCKSWRLRSAWELFKKLP-RYGPEPNVVTYTVMICGLCIEGGIEKA---YDLLPDME-- 468
           GLCKS R   A+++F  +  ++G  P+ +TY  +I GL   G   +A    D +PD +  
Sbjct: 474 GLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDPDTY 533

Query: 469 ---------EKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519
                     K+ +  +A+++ ++M +  + PD++T +IL     K  N  +   L    
Sbjct: 534 AFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEM 593

Query: 520 LSRNQEESKLT 530
           +++N +   +T
Sbjct: 594 VAKNLQPDVMT 604



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 115/410 (28%), Positives = 195/410 (47%), Gaps = 29/410 (7%)

Query: 74  FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
           F   M      P + ++N+++  L         + L E L   G  PD V+ N L++  C
Sbjct: 203 FRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLC 262

Query: 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
           K   + +A    G +  +   P+VVT   LI GLC  G+  EA  L  +     C  +V+
Sbjct: 263 KAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSC--DVL 320

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG--IYPDAFVYNSLIRVYCCAVNWEDAK 251
           PN+I Y S +DGLCK     +   L   ++     + PD   +++LI   C         
Sbjct: 321 PNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLC-------KC 373

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
           G    A  + ++ + G    G +  P+V++Y +++N LCK   +++A  +   M  +G+ 
Sbjct: 374 GQIDEACSVFDDMIAG----GYV--PNVITYNALVNGLCKADKMERAHAMIESMVDKGVT 427

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           PDV+ YS L+D +C   R+D+A +L   + S GC P+  ++N++I+   K ++  EA  +
Sbjct: 428 PDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQM 487

Query: 372 YGEM-ISMGVRPD--NSCILEAAELFRTLHNTKFEL--------DLTVFNCLVDGLCKSW 420
           + +M +  G+ PD    C L    LFRT    + E         D   FNC ++GL K  
Sbjct: 488 FDDMALKHGLVPDKITYCTLIDG-LFRTGRAGQAEALLDAMPDPDTYAFNCCINGLSKLG 546

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            +  A +++ ++      P+ VT+ ++I G C  G  E+A  L  +M  K
Sbjct: 547 DVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAK 596



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/443 (26%), Positives = 203/443 (45%), Gaps = 62/443 (13%)

Query: 69   NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
            +DAL   + +      P   ++N L+  L         I + E +   G  PD V+ N L
Sbjct: 689  DDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTL 748

Query: 129  MNCFCKMIGVSDAFVALGRILRKVFS---PDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
            ++  CK   + +A    G +  +V     P+VVT   LI GLC  G+  EA  L  + + 
Sbjct: 749  IDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMR 808

Query: 186  FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG--IYPDAFVYNSLIRVYCC 243
              C  +V+PN+I Y S +DGLCK   + +   L   ++     + PD   +++LI   C 
Sbjct: 809  KSC--DVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLC- 865

Query: 244  AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                    G T  A  + ++ + G    G +  P+V++Y  ++N LCK   +++A  +  
Sbjct: 866  ------KCGQTDEACNVFDDMIAG----GYV--PNVVTYNVLMNGLCKTDKMERAHAMIE 913

Query: 304  DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
             M  +G+ PDV+ YS L+D +C    +D+A +L   + S GC P+  ++N++I+   K +
Sbjct: 914  SMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSD 973

Query: 364  KVEEALSLYGEM-ISMGVRPD-----------------------------------NSCI 387
            +  EA  ++ +M +  G+ PD                                   N CI
Sbjct: 974  QSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPDPDTYAFNCCI 1033

Query: 388  ---LEAAELFRTLHNT-KFEL--DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
                +  ++ R LH   + EL  D   FN L+ G CK+     A  LF+++     +P+V
Sbjct: 1034 NGLSKLGDVSRALHRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDV 1093

Query: 442  VTYTVMICGLCIEGGIEKAYDLL 464
            +T+  +I GLC  G +E  +D++
Sbjct: 1094 MTFGALIDGLCKAGQVEATWDIM 1116



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/311 (30%), Positives = 151/311 (48%), Gaps = 48/311 (15%)

Query: 234 YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDV 293
           YN +++  C A       G T+ ALE+    +  +G       P +++Y +IIN LCK  
Sbjct: 183 YNIVLQSLCRA-------GETARALEIFRGEMARDG-----VAPTIVTYNTIINGLCKSN 230

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353
            +    ELF ++  RG  PDVV Y++LID  C  G +++AR+L   + S  C+P+  +Y+
Sbjct: 231 ELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYS 290

Query: 354 TLINSYSKIEKVEEALSLYGEMI--SMGVRPD-------------NSCILEAAELFRTLH 398
            LIN   K+ +++EA  L  EM   S  V P+              S   EA EL R+L 
Sbjct: 291 VLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLR 350

Query: 399 NTKFEL--DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           +    +  D   F+ L+DGLCK  ++  A  +F  +   G  PNV+TY  ++ GLC    
Sbjct: 351 DGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADK 410

Query: 457 IEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITV-S 497
           +E+A+ ++  M +                  K     +A+ELLH MA R   P+ +T  S
Sbjct: 411 MERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNS 470

Query: 498 ILEELLNKDEN 508
           I++ L   D +
Sbjct: 471 IIDGLCKSDRS 481


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 123/466 (26%), Positives = 213/466 (45%), Gaps = 58/466 (12%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N+L+   AG   Y         + ++ + PD  +   ++   C    V +A   L  +
Sbjct: 115 AYNTLV---AGYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDM 171

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
           L +   P VVT   L+  +C    F +A  +  +  A  C     PN++ Y  II+G+C+
Sbjct: 172 LHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGC----TPNIVTYNVIINGMCR 227

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           +G V+  R     +   G  PD   Y ++++  C A  WED +       EL  E +  N
Sbjct: 228 EGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVE-------ELFAEMMEKN 280

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                 C P+ +++  ++   C+  +V++A ++   M   G   +  + + +I+  C  G
Sbjct: 281 ------CMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQG 334

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS--- 385
           R+DDA +   ++ S GC PDT SY T++    + E+ E+A  L  EM+     P+     
Sbjct: 335 RVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFN 394

Query: 386 ---CIL-------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
              CIL       +A  L   +     E+++  +N LV+G C   R+ SA ELF  +P  
Sbjct: 395 TFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP-- 452

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL-------------------- 475
             +PN +TYT ++ GLC    ++ A +LL +M +K  +C                     
Sbjct: 453 -CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQK--DCAPNVVTFNVLVSFFCQKGLMD 509

Query: 476 KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
           +AIEL+ +M +    P+ IT + L + + KD N  E + LL   +S
Sbjct: 510 EAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVS 555



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 122/497 (24%), Positives = 219/497 (44%), Gaps = 91/497 (18%)

Query: 51  TKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLS 110
           T +++ L +  + GE     AL   + M+H    P + ++  LL A+     +   + + 
Sbjct: 149 TPIIRGLCDRGRVGE-----ALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVL 203

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           + +   G  P+ V+ N+++N  C+   V DA   L R+    F PD V+   +++GLC  
Sbjct: 204 DEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAA 263

Query: 171 GKFTEASGLFTK---------------FVAFDCRPNVIPNVI----------CYAS---- 201
            ++ +   LF +                V F CR  ++   I          C A+    
Sbjct: 264 KRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLC 323

Query: 202 --IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE 259
             +I+ +CK G V+       +M   G  PD   Y ++++  C A  WEDAK       E
Sbjct: 324 NIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAK-------E 376

Query: 260 LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSS 319
           L +E V  N      C P+ +++ + I  LC+  L+++A  L   M   G   ++V Y++
Sbjct: 377 LLKEMVRKN------CPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNA 430

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           L++G+C+ GR+D A +LF S+    C P+T +Y TL+      E+++ A  L  EM+   
Sbjct: 431 LVNGFCVQGRVDSALELFYSMP---CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKD 487

Query: 380 VRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
             P                      ++  FN LV   C+   +  A EL +++  +G  P
Sbjct: 488 CAP----------------------NVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTP 525

Query: 440 NVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           N++TY  ++ G+  +   E                 +A+ELLH +    V PD +T S +
Sbjct: 526 NLITYNTLLDGITKDCNSE-----------------EALELLHGLVSNGVSPDIVTYSSI 568

Query: 500 EELLNKDENCHECMNLL 516
             +L++++   E + + 
Sbjct: 569 IGVLSREDRVEEAIKMF 585



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 111/430 (25%), Positives = 192/430 (44%), Gaps = 38/430 (8%)

Query: 51  TKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLS 110
           T +LK L    +  +VE       F  M+     P   +F+ L+            I + 
Sbjct: 254 TTVLKGLCAAKRWEDVEE-----LFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVL 308

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           E+++  G   +    NI++N  CK   V DAF  L  +     SPD ++   +++GLC  
Sbjct: 309 EQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRA 368

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
            ++ +A  L  + V    R N  PN + + + I  LC+ G + +  +L   M   G   +
Sbjct: 369 ERWEDAKELLKEMV----RKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVN 424

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
              YN+L+  +C        +G   +ALEL            + C P+ ++Y +++  LC
Sbjct: 425 IVTYNALVNGFC-------VQGRVDSALELF---------YSMPCKPNTITYTTLLTGLC 468

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
               +D A EL  +M  +   P+VV ++ L+  +C  G +D+A +L   +   GC P+  
Sbjct: 469 NAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLI 528

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTL 397
           +YNTL++  +K    EEAL L   ++S GV PD                + EA ++F  +
Sbjct: 529 TYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIV 588

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
            +        ++N ++  LCK      A + F  +   G  PN +TY  +I GL  E  +
Sbjct: 589 QDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFL 648

Query: 458 EKAYDLLPDM 467
           ++  DLL ++
Sbjct: 649 KETRDLLREL 658



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 164/346 (47%), Gaps = 33/346 (9%)

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           +++A   + R   +  +PDV     LIR LC +G+ ++A+ +         R     +V 
Sbjct: 59  LAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAE----RSGTAVDVF 114

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            Y +++ G C+ G ++  R L   M    + PDA+ Y  +IR  C        +G    A
Sbjct: 115 AYNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLC-------DRGRVGEA 164

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
           L L ++ ++        C P V++Y  ++ ++CK     +A E+  +M+++G  P++V Y
Sbjct: 165 LSLLDDMLHRG------CQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTY 218

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           + +I+G C  GR+DDAR+    + S G  PDT SY T++      ++ E+   L+ EM+ 
Sbjct: 219 NVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMME 278

Query: 378 MGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
               P+                +  A ++   +       + T+ N +++ +CK  R+  
Sbjct: 279 KNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDD 338

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           A++    +  YG  P+ ++YT ++ GLC     E A +LL +M  K
Sbjct: 339 AFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRK 384



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 139/311 (44%), Gaps = 20/311 (6%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DA      M+     P   +FN+ +  L  K        L E+++  G   + V+ N L+
Sbjct: 373 DAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALV 432

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           N FC    V  A      +  K   P+ +T   L+ GLC   +   A+ L  + +  DC 
Sbjct: 433 NGFCVQGRVDSALELFYSMPCK---PNTITYTTLLTGLCNAERLDAAAELLAEMLQKDC- 488

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
               PNV+ +  ++   C+ G +++   L   M   G  P+   YN+L+       +   
Sbjct: 489 ---APNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLL-------DGIT 538

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
              N+  ALEL    V+ NG       PD+++Y SII  L ++  V++A ++F  ++  G
Sbjct: 539 KDCNSEEALELLHGLVS-NG-----VSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLG 592

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
           + P  V+Y+ ++   C     D A   F  + S GC+P+  +Y TLI   +  + ++E  
Sbjct: 593 MRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETR 652

Query: 370 SLYGEMISMGV 380
            L  E+ S GV
Sbjct: 653 DLLRELCSRGV 663



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 106/243 (43%), Gaps = 37/243 (15%)

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           + +D L + A+ L     SRG  PDV + + LI   C  GR  DA ++  + E  G   D
Sbjct: 54  IARDDLAEAAR-LVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVD 112

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP-------------DNSCILEAAELFR 395
             +YNTL+  Y +  +++ A  L   + SM V P             D   + EA  L  
Sbjct: 113 VFAYNTLVAGYCRYGQLDAARRL---IASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLD 169

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            + +   +  +  +  L++ +CKS     A E+  ++   G  PN+VTY V+I G+C EG
Sbjct: 170 DMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREG 229

Query: 456 GIEKA---------YDLLPDMEEKIRECLKAI----------ELLHKMAKRYVKPDEITV 496
            ++ A         Y   PD        LK +          EL  +M ++   P+E+T 
Sbjct: 230 RVDDAREFLNRLSSYGFQPDTVSYT-TVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTF 288

Query: 497 SIL 499
            +L
Sbjct: 289 DML 291


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 129/442 (29%), Positives = 205/442 (46%), Gaps = 57/442 (12%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A+     M+     P   ++NS++            I   +++++ G+ PD V+ N 
Sbjct: 250 MDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNS 309

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           LM+  CK    ++A      + ++   P++ T G L++G   +G   E  GL    V   
Sbjct: 310 LMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNG 369

Query: 188 CRPN-------------------------------VIPNVICYASIIDGLCKDGFVNKVR 216
             PN                               + P+ + Y ++I  LCK G V    
Sbjct: 370 IHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAM 429

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
             F  M    + P   VYNSLI   C    W+ AK       EL  E ++       IC 
Sbjct: 430 RYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK-------ELILEMLDRG-----IC- 476

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
            D + + SII+S CK+  V ++++LF  M   G+ P+++ YS+LIDGYCL G++D+A KL
Sbjct: 477 LDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKL 536

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCILE---- 389
             S+ S G  PD  +YNTLIN Y KI ++E+AL L+ EM S GV PD    + IL+    
Sbjct: 537 LASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQ 596

Query: 390 ------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                 A EL+  +  +  +L+L+ +N ++ GLCK+     A  +F+ L     +    T
Sbjct: 597 TRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRT 656

Query: 444 YTVMICGLCIEGGIEKAYDLLP 465
           + +MI  L   G  ++A DL  
Sbjct: 657 FNIMIGALLKVGRNDEAKDLFA 678



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/403 (28%), Positives = 185/403 (45%), Gaps = 61/403 (15%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+LP+ V+ N ++   CK   +  A   L  +++    P+  T   ++ G C  G+  EA
Sbjct: 229 GILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEA 288

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
            G   K  +      V P+V+ Y S++D LCK+G   + R +F  M  RG+ P+   Y +
Sbjct: 289 IGFLKKMHS----DGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGT 344

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHE--EFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294
           L++ Y         KG   A +E+H   + +  NG      HP+   +  +I +  K   
Sbjct: 345 LLQGYA-------TKG---ALVEMHGLLDLMVRNG-----IHPNHYVFSILICAYAKQGK 389

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           VD+A  +F  M+ +G+ PD V Y ++I   C  GR++DA + F  +  E   P    YN+
Sbjct: 390 VDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNS 449

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           LI+S    +K ++A  L  EM+  G+     C                 LD   FN ++D
Sbjct: 450 LIHSLCIFDKWDKAKELILEMLDRGI-----C-----------------LDTIFFNSIID 487

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE----- 469
             CK  R+  + +LF  + R G +PN++TY+ +I G C+ G +++A  LL  M       
Sbjct: 488 SHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKP 547

Query: 470 -------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                        KI     A+ L  +M    V PD IT +I+
Sbjct: 548 DCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNII 590



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 171/391 (43%), Gaps = 66/391 (16%)

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP-----NVICYASIIDGLCK 208
           +P++ T G LI   C  G+           + F    NVI      + I +  ++ GLC 
Sbjct: 88  TPNLCTYGILIGSCCCAGRLD---------LGFAALGNVIKKGFRVDAIAFTPLLKGLCA 138

Query: 209 DGFV-NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
           D    + + ++   M   G  P+ F YN L++  C        +  +  ALEL +   + 
Sbjct: 139 DKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLC-------DENRSQEALELLQMMPDD 191

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
            G+    C PDV+SY ++IN   K+  +DKA   + +M  RGI+P+VV Y+S+I   C  
Sbjct: 192 GGD----CPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKA 247

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
             +D A ++  S+   G +P+  +YN++++ Y    + +EA+    +M S GV P     
Sbjct: 248 QAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEP----- 302

Query: 388 LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
                            D+  +N L+D LCK+ R   A ++F  + + G +P + TY  +
Sbjct: 303 -----------------DVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTL 345

Query: 448 ICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYV 489
           + G   +G + + + LL  M                    K  +  +A+ +  KM ++ +
Sbjct: 346 LQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGL 405

Query: 490 KPDEITVSILEELLNKDENCHECMNLLPSFL 520
            PD +T   +  +L K     + M      +
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAMRYFEQMI 436



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 117/481 (24%), Positives = 199/481 (41%), Gaps = 71/481 (14%)

Query: 39  LHSNSVS-TVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGAL 97
           +HS+ V   V     L+ YL +N +  E     A   F+ M      P + ++ +LL   
Sbjct: 295 MHSDGVEPDVVTYNSLMDYLCKNGRCTE-----ARKMFDSMTKRGLKPEITTYGTLLQGY 349

Query: 98  AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDV 157
           A K   V    L + +   G+ P+    +IL+  + K   V  A +   ++ ++  +PD 
Sbjct: 350 ATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDT 409

Query: 158 VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRV 217
           VT G +I  LC  G+  +A   F + +       + P  I Y S+I  LC     +K + 
Sbjct: 410 VTYGTVIGILCKSGRVEDAMRYFEQMI----DERLSPGNIVYNSLIHSLCIFDKWDKAKE 465

Query: 218 LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277
           L L+M  RGI  D   +NS+I  +C        +G    + +L +  V     +GV   P
Sbjct: 466 LILEMLDRGICLDTIFFNSIIDSHC-------KEGRVIESEKLFDLMV----RIGV--KP 512

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           ++++Y ++I+  C    +D+A +L   M S G+ PD V Y++LI+GYC + R++DA  LF
Sbjct: 513 NIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLF 572

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------- 383
             +ES G  PD  +YN ++    +  +   A  LY  +   G + +              
Sbjct: 573 REMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKN 632

Query: 384 -----------NSCIL-----------------------EAAELFRTLHNTKFELDLTVF 409
                      N C+                        EA +LF  L       D+  +
Sbjct: 633 NLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTY 692

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           + + + L +   L    +LF  +   G   N      ++  L   G I +A   L  ++E
Sbjct: 693 SLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDE 752

Query: 470 K 470
           K
Sbjct: 753 K 753


>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
 gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
          Length = 757

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 122/448 (27%), Positives = 214/448 (47%), Gaps = 68/448 (15%)

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           F +MI     P   ++  L+        +   + + + ++T GL PD     +L++  CK
Sbjct: 225 FQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDCYIYAVLLDYLCK 284

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN--- 191
               ++A      ++RK   P+V   G L+ G   +G  +E        V     P+   
Sbjct: 285 NGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMVGNGVSPDHHI 344

Query: 192 ----------------------------VIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
                                       + PN++ Y ++ID LCK G V+   + F  M 
Sbjct: 345 FNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQMI 404

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
             G+ PD FV++SL+   C    WE A+       EL  E ++    L      D + + 
Sbjct: 405 DEGMTPDIFVFSSLVYGLCTVDKWEKAE-------ELFFEVLDQGIRL------DTVFFN 451

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
           +++ +LC++  V +A+ L   M   G+ PDV+ Y++L+DG+CL GRID+A KL   I S 
Sbjct: 452 TLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSI 511

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCIL----------EA 390
           G  PD  +YNTL++ Y K  ++++A SL+ EM+  G+ PD    + IL          EA
Sbjct: 512 GLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEA 571

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
            EL+ ++ N++ ++++  +N +++GLCK+  +  A+++F  L     + ++ T  +MI G
Sbjct: 572 KELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMI-G 630

Query: 451 LCIEGGIEK----------AYDLLPDME 468
             ++GG ++          AY L+PD+E
Sbjct: 631 ALLKGGRKEDAMDLFATISAYGLVPDVE 658



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 102/419 (24%), Positives = 192/419 (45%), Gaps = 30/419 (7%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  L++   F + M+    +P    FN +  A A K      + + +++    L P+ V+
Sbjct: 320 EGSLSEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVT 379

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
              L++  CK+  V DA +   +++ +  +PD+     L+ GLC   K+ +A  LF  F 
Sbjct: 380 YGALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELF--FE 437

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
             D    +  + + + +++  LC++G V + + L   M   G+ PD   YN+L+  +C  
Sbjct: 438 VLD--QGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLT 495

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                  G    A +L +  V+      +   PD ++Y ++++  CK   +D A  LF +
Sbjct: 496 -------GRIDEAAKLLDVIVS------IGLKPDKVTYNTLLHGYCKARRIDDAYSLFRE 542

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M  +G+ PDVV Y++++ G    GR  +A++L++S+ +     +  +YN +IN   K   
Sbjct: 543 MLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIINGLCKNNF 602

Query: 365 VEEALSLYGEMISMGVRPD--NSCIL-----------EAAELFRTLHNTKFELDLTVFNC 411
           V+EA  ++  + S  ++ D   + I+           +A +LF T+       D+  +  
Sbjct: 603 VDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYCL 662

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           + + L K   L    ELF  +   G  PN      ++  L   G I +A   L  ++EK
Sbjct: 663 IAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDINRAGAYLSKLDEK 721



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 120/523 (22%), Positives = 218/523 (41%), Gaps = 125/523 (23%)

Query: 52  KLLKYLSENSKSGEVELNDALCFFNYMI-HMQPTPFMPSFNSLLGALA------GKKYYV 104
           +L + +++ + SG + LNDAL  F+ M+ H +P   + +FN LL A++        +  V
Sbjct: 16  ELERVIADRAHSGSLGLNDALKLFDEMLTHARPAS-VRAFNQLLTAVSRARCSSASELVV 74

Query: 105 NFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLI 164
           +      R  +I + P   +  IL+ CFC+M  +   F A                    
Sbjct: 75  SLFNRMIRECSIKVAPSSFTYTILIGCFCRMGRLKHGFAAF------------------- 115

Query: 165 RGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVR-VLFLDMK 223
            GL ++  +                   + + + ++ ++ GLC    V++   +L   M 
Sbjct: 116 -GLILKTGWR------------------VNDTVIFSQLLKGLCDAKRVDEATDILLRRMP 156

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN-GNGELGVICHPDVLSY 282
             G  PD F Y+ L++ +C     E+A       LEL     + G+G       P+V++Y
Sbjct: 157 EFGCTPDVFSYSILLKGFCNEKRAEEA-------LELLSMMADDGDGSHT----PNVVTY 205

Query: 283 CSIINSLCKDVLVDKAKELF-----------------------------------LDMKS 307
            ++I+ LCK  +VD+AK +F                                    +M +
Sbjct: 206 TTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMST 265

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            G+ PD  +Y+ L+D  C  GR  +AR +F S+  +G  P+ + Y  L++ Y+    + E
Sbjct: 266 HGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSE 325

Query: 368 ALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFELDLTVFNCLVD 414
             S    M+  GV PD+             + I EA  +F  +   +   ++  +  L+D
Sbjct: 326 MHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALID 385

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD-MEEKIR- 472
            LCK  R+  A   F ++   G  P++  ++ ++ GLC     EKA +L  + +++ IR 
Sbjct: 386 ALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRL 445

Query: 473 ----------------ECLKAIELLHKMAKRYVKPDEITVSIL 499
                             ++A  L+  M +  V+PD I+ + L
Sbjct: 446 DTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTL 488



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 148/349 (42%), Gaps = 57/349 (16%)

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLF-LDMKGRGIYPDAFVYNSL 237
           LF + +  +C   V P+   Y  +I   C+ G +      F L +K      D  +++ L
Sbjct: 76  LFNRMIR-ECSIKVAPSSFTYTILIGCFCRMGRLKHGFAAFGLILKTGWRVNDTVIFSQL 134

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           ++  C A   ++A   T   L    EF          C PDV SY  ++   C +   ++
Sbjct: 135 LKGLCDAKRVDEA---TDILLRRMPEFG---------CTPDVFSYSILLKGFCNEKRAEE 182

Query: 298 AKELFLDMKSRG---IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           A EL   M   G     P+VV Y+++IDG C    +D A+ +F  +  +G  P+  +Y  
Sbjct: 183 ALELLSMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTC 242

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           LI+ Y  I K +E + +  EM + G++PD  C                     ++  L+D
Sbjct: 243 LIHGYLSIGKWKEVVQMLQEMSTHGLQPD--CY--------------------IYAVLLD 280

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL---------P 465
            LCK+ R   A  +F  + R G +PNV  Y +++ G   EG + + +  L         P
Sbjct: 281 YLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMVGNGVSP 340

Query: 466 DME---------EKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505
           D            K     +A+ +  KM ++ + P+ +T   L + L K
Sbjct: 341 DHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCK 389



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 148/317 (46%), Gaps = 37/317 (11%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLN---------- 114
           E  + +A    + M+ +   P + S+N+L          V+  CL+ R++          
Sbjct: 460 EGRVMEAQRLIDLMLRVGVRPDVISYNTL----------VDGHCLTGRIDEAAKLLDVIV 509

Query: 115 TIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFT 174
           +IGL PD V+ N L++ +CK   + DA+     +L K  +PDVVT   ++ GL   G+F+
Sbjct: 510 SIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFS 569

Query: 175 EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVY 234
           EA  L+   +  + R  +  N+  Y  II+GLCK+ FV++   +F  +  + +  D F  
Sbjct: 570 EAKELYLSMI--NSRTQM--NIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTA 625

Query: 235 NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294
           N +I         EDA            +        G++  PDV +YC I  +L K+  
Sbjct: 626 NIMIGALLKGGRKEDAM-----------DLFATISAYGLV--PDVETYCLIAENLIKEGS 672

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           +++  ELF  M+  G  P+  + ++L+      G I+ A      ++ +    + S+ + 
Sbjct: 673 LEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDINRAGAYLSKLDEKNFSLEASTTSM 732

Query: 355 LINSYSKIEKVEEALSL 371
           LI+ YS+ E  + A SL
Sbjct: 733 LISIYSRGEYQQLAKSL 749



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 108/249 (43%), Gaps = 38/249 (15%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELF-LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
           P   +Y  +I   C+   +      F L +K+   + D V++S L+ G C   R+D+A  
Sbjct: 90  PSSFTYTILIGCFCRMGRLKHGFAAFGLILKTGWRVNDTVIFSQLLKGLCDAKRVDEATD 149

Query: 336 LFVSIESE-GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
           + +    E GC PD  SY+ L+  +   ++ EEAL L   M   G   D S         
Sbjct: 150 ILLRRMPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADDG---DGS--------- 197

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
              H      ++  +  ++DGLCK+  +  A  +F+ +   G  PN  TYT +I G    
Sbjct: 198 ---HTP----NVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSI 250

Query: 455 GGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMN 514
           G              K +E    +++L +M+   ++PD    ++L + L K+  C E  N
Sbjct: 251 G--------------KWKE---VVQMLQEMSTHGLQPDCYIYAVLLDYLCKNGRCTEARN 293

Query: 515 LLPSFLSRN 523
           +  S + + 
Sbjct: 294 IFDSVIRKG 302


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 127/428 (29%), Positives = 201/428 (46%), Gaps = 35/428 (8%)

Query: 53  LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSER 112
           LL  L E SK   +E       ++ M      P + +FN+L+ AL         + + E 
Sbjct: 156 LLNVLVEGSKMKLLE-----TVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEE 210

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +++ G+ PD  +   LM  F +   +  A     R+L    SP  VT+  LI G C  G+
Sbjct: 211 MSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGR 270

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
             +A G   + +A        P+ I Y + ++GLC++G V     +   M   G  PD F
Sbjct: 271 VEDALGYIQQEIANGFE----PDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVF 326

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            YN ++   C     E+AKG            +N   E G  C PD+ ++ ++I +LC  
Sbjct: 327 TYNIVVNCLCKNGQLEEAKG-----------ILNQMVERG--CLPDITTFNTLIVALCSG 373

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             +++A +L   +  +G+ PDV  ++ LI+  C +G    A +LF  ++S GC PD  +Y
Sbjct: 374 NRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTY 433

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMG---------VRPDNSC----ILEAAELFRTLHN 399
           NTLI++   + K+ +AL L  EM S G            D  C    I EA E+F  +  
Sbjct: 434 NTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDL 493

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
                +   FN L+DGLCK  R+  A +L  ++   G +PN +TY  ++   C +G I+K
Sbjct: 494 QGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKK 553

Query: 460 AYDLLPDM 467
           A D+L  M
Sbjct: 554 AADILQTM 561



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 120/481 (24%), Positives = 212/481 (44%), Gaps = 87/481 (18%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++  A+     M      P   +F +L+     +      + +  R+  +G  P  V++N
Sbjct: 200 QVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVN 259

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +L+N +CK+  V DA   + + +   F PD +T    + GLC  G    A  +    V  
Sbjct: 260 VLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMV-- 317

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             +    P+V  Y  +++ LCK+G + + + +   M  RG  PD   +N+LI   C    
Sbjct: 318 --QEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNR 375

Query: 247 WEDA----------------------------KGNTSAALELHEEFVNGNGELGVICHPD 278
            E+A                             G+   AL L EE  +        C PD
Sbjct: 376 LEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSG------CTPD 429

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
            ++Y ++I++LC    + KA +L  +M+S G     V Y+++IDG C   RI++A ++F 
Sbjct: 430 EVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFD 489

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC------------ 386
            ++ +G   +  ++NTLI+   K +++++A  L  +MIS G++P+N              
Sbjct: 490 QMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQG 549

Query: 387 -ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRL----------------------- 422
            I +AA++ +T+    FE+D+  +  L++GLCK+ R                        
Sbjct: 550 DIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYN 609

Query: 423 ------------RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG-IEKAYDLLPDMEE 469
                       R A  LF+++   G  P+  TY ++  GLC  GG I +A+D L +M +
Sbjct: 610 PVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVD 669

Query: 470 K 470
           K
Sbjct: 670 K 670



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 106/373 (28%), Positives = 169/373 (45%), Gaps = 41/373 (10%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G++E  +A    N M+     P + +FN+L+ AL         + L+ ++   GL PD
Sbjct: 337 KNGQLE--EAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPD 394

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFS----PDVVTLGCLIRGLCMQGKFTEAS 177
             + NIL+N  CK   V D  +AL R+  ++ S    PD VT   LI  LC  GK  +A 
Sbjct: 395 VYTFNILINALCK---VGDPQLAL-RLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKAL 450

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            L  +  +  C P    + + Y +IIDGLCK   + +   +F  M  +GI  +A  +N+L
Sbjct: 451 DLLKEMESAGC-PR---STVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTL 506

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           I   C     +DA        +L  + ++          P+ ++Y SI+   CK   + K
Sbjct: 507 IDGLCKDKRIDDAN-------QLISQMISEG------LQPNNITYNSILTHYCKQGDIKK 553

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A ++   M + G   DVV Y +LI+G C  GR   A KL   +  +G      +YN +I 
Sbjct: 554 AADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQ 613

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPD--------------NSCILEAAELFRTLHNTKFE 403
           S  +     +A++L+ EM  +G  PD                 I EA +    + +  F 
Sbjct: 614 SLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKGFI 673

Query: 404 LDLTVFNCLVDGL 416
            + + F  L +GL
Sbjct: 674 PEFSSFRMLAEGL 686



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 136/305 (44%), Gaps = 44/305 (14%)

Query: 226 GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSI 285
           GI  D  VYN L+ V               + ++L E   +  GE G+   PDV+++ ++
Sbjct: 145 GIQADTVVYNHLLNVLV-----------EGSKMKLLETVYSEMGERGI--KPDVVTFNTL 191

Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
           + +LC+   V  A  +  +M S G+ PD   +++L+ G+   G I  A ++   +   GC
Sbjct: 192 MKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGC 251

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAE 392
            P   + N LIN Y K+ +VE+AL    + I+ G  PD             N  +  A +
Sbjct: 252 SPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALK 311

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
           +   +     + D+  +N +V+ LCK+ +L  A  +  ++   G  P++ T+  +I  LC
Sbjct: 312 VMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALC 371

Query: 453 IEGGIEKAYDLL---------PDMEE---------KIRECLKAIELLHKMAKRYVKPDEI 494
               +E+A DL          PD+           K+ +   A+ L  +M      PDE+
Sbjct: 372 SGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEV 431

Query: 495 TVSIL 499
           T + L
Sbjct: 432 TYNTL 436



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 142/348 (40%), Gaps = 47/348 (13%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G+ +L  AL  F  M     TP   ++N+L+  L         + L + + + G    
Sbjct: 407 KVGDPQL--ALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRS 464

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+ N +++  CK + + +A     ++  +  S + +T   LI GLC   +  +A+ L +
Sbjct: 465 TVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLIS 524

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           + ++      + PN I Y SI+   CK G + K   +   M   G   D   Y +LI   
Sbjct: 525 QMIS----EGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGL 580

Query: 242 CCAVNWEDA----------------------------KGNTSAALELHEEFVNGNGELGV 273
           C A   + A                            + NT  A+ L  E      E+G 
Sbjct: 581 CKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMT----EVGE 636

Query: 274 ICHPDVLSYCSIINSLCKDV-LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
              PD  +Y  +   LC+    + +A +  L+M  +G IP+   +  L +G   +G +DD
Sbjct: 637 --PPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKGFIPEFSSFRMLAEGLLNLG-MDD 693

Query: 333 --ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
              R + + IE         S  + I  Y KI K  +AL+ +G ++ +
Sbjct: 694 YFIRAIEIIIEKADL---GDSDVSAIRGYLKIRKFYDALATFGRLLKI 738


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 137/497 (27%), Positives = 233/497 (46%), Gaps = 49/497 (9%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           + G +E  DA   F  M+ +   P    + +L+     +  +   + + + ++  G+ PD
Sbjct: 458 RHGSIE--DASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPD 515

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            +  N ++   CK   + +A   L  ++ +   P+V T G LI G C  G+   A   F 
Sbjct: 516 VLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFK 575

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           + +     PN   +V+C A +IDG CK+G   +   +F  M GR ++PD   Y++LI   
Sbjct: 576 EMLGCGIAPN---DVVCTA-LIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGL 631

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
                     G    A+EL  EF+    E G++  PDV +Y SII+  CK   + KA +L
Sbjct: 632 L-------RNGKLQGAMELLSEFL----EKGLV--PDVFTYNSIISGFCKQGGIGKAFQL 678

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
              M  +GI P+++ Y++LI+G C  G I+ AR+LF  I  +G   +  +Y T+I+ Y K
Sbjct: 679 HEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCK 738

Query: 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL------------TVF 409
              + +A  L+ EM   GV PD+       +  R   NT+  L L            +  
Sbjct: 739 SGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSL 798

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           N L+DG CKS ++  A +L + +     +P+ VTYT++I   C  G +++A     DM++
Sbjct: 799 NALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQK 858

Query: 470 K--IRECLKAIELL--HKMAKRY--------------VKPDEITVSILEELLNKDENCHE 511
           +  +   L    LL  + MA R               ++PD +T S++ +   K+ +  +
Sbjct: 859 RNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVK 918

Query: 512 CMNLLPSFLSRNQEESK 528
            + L+   L +    SK
Sbjct: 919 TLKLVDDMLKKGGNVSK 935



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 126/499 (25%), Positives = 214/499 (42%), Gaps = 49/499 (9%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G++E  DAL   N MI +   P   ++N+++     ++       L   +    L+P 
Sbjct: 388 KFGDMEKADAL--LNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPT 445

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             +  +++N  C+   + DA      ++     P+ V    LI+G   +G+F EA     
Sbjct: 446 AYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEA----V 501

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           + +    +  V P+V+CY S+I GLCK   + + +   ++M  RG+ P+ + Y +LI  Y
Sbjct: 502 RILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGY 561

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C         G    A    +E       LG    P+ +   ++I+  CK+    +A  +
Sbjct: 562 C-------KSGEMQVADRYFKEM------LGCGIAPNDVVCTALIDGYCKEGSTTEATSI 608

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F  M  R + PDV  YS+LI G    G++  A +L      +G +PD  +YN++I+ + K
Sbjct: 609 FRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCK 668

Query: 362 IEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTV 408
              + +A  L+  M   G+ P+                I  A ELF  +       +   
Sbjct: 669 QGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVT 728

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +  ++DG CKS  L  A+ LF ++   G  P+   Y+ +I G   EG  EKA  L  +  
Sbjct: 729 YATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESV 788

Query: 469 EK-----------------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHE 511
           +K                   + ++A +LL  M  ++VKPD +T +IL +   K     E
Sbjct: 789 QKGFASTSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKE 848

Query: 512 CMNLLPSFLSRNQEESKLT 530
                     RN   + LT
Sbjct: 849 AEQFFVDMQKRNLMPNALT 867



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 115/417 (27%), Positives = 194/417 (46%), Gaps = 33/417 (7%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLL-GALAGKKYYVNFICLSERLNTIGLLPDFV 123
           E    +A   F  M+     P + ++++L+ G L   K       LSE L   GL+PD  
Sbjct: 599 EGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEK-GLVPDVF 657

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           + N +++ FCK  G+  AF     + +K  SP+++T   LI GLC  G+   A  LF   
Sbjct: 658 TYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGI 717

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
                   +  N + YA+IIDG CK G ++K   LF +M  +G+ PD+FVY++LI     
Sbjct: 718 PG----KGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALI----- 768

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
             +    +GNT  AL L  E V               S  ++++  CK   V +A +L  
Sbjct: 769 --DGCRKEGNTEKALSLFLESVQKG-------FASTSSLNALMDGFCKSGKVIEANQLLE 819

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
           DM  + + PD V Y+ LID +C  G + +A + FV ++    +P+  +Y  L++ Y+   
Sbjct: 820 DMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAG 879

Query: 364 KVEEALSLYGEMISMGVRPDNSC--ILEAAELFRTLHNTKFEL--DL---------TVFN 410
           +  E  +L+ EMI+  + PD     ++  A L    H    +L  D+          V +
Sbjct: 880 RRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCH 939

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            L+D LC+   +    ++ +K+   G   ++ T + ++      G ++ A  +L  M
Sbjct: 940 VLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAARVLKSM 996



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 115/435 (26%), Positives = 185/435 (42%), Gaps = 65/435 (14%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           +P + ++N ++G L           L + ++  GL+ D  + +IL++ F K    ++A +
Sbjct: 268 SPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKL 327

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
            L  +  K   P  V    LI G   QG   EA  +  + +A      V  N+  Y +++
Sbjct: 328 MLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLA----RGVKLNLFTYNALV 383

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
            G+CK G + K   L  +M   GI PD   YN++I  Y         + NTS   +L  E
Sbjct: 384 KGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYL-------KEQNTSRVKDLLSE 436

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
               N        P   +   IIN LC+   ++ A  +F  M S G+ P+ V+Y++LI G
Sbjct: 437 MKKSN------LVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKG 490

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP- 382
           +   GR  +A ++   ++ +G  PD   YN++I    K  K+EEA     EMI  G++P 
Sbjct: 491 HVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPN 550

Query: 383 -------------------------------------------DNSC----ILEAAELFR 395
                                                      D  C      EA  +FR
Sbjct: 551 VYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFR 610

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            +       D+  ++ L+ GL ++ +L+ A EL  +    G  P+V TY  +I G C +G
Sbjct: 611 CMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQG 670

Query: 456 GIEKAYDLLPDMEEK 470
           GI KA+ L   M +K
Sbjct: 671 GIGKAFQLHEYMCQK 685



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/387 (22%), Positives = 170/387 (43%), Gaps = 31/387 (8%)

Query: 67   ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            +L  A+   +  +     P + ++NS++     +        L E +   G+ P+ ++ N
Sbjct: 636  KLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYN 695

Query: 127  ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
             L+N  CK   +  A      I  K  + + VT   +I G C  G  ++A  LF +    
Sbjct: 696  ALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTL- 754

Query: 187  DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                 V P+   Y+++IDG  K+G   K   LFL+   +G +      N+L+  +C    
Sbjct: 755  ---KGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKG-FASTSSLNALMDGFC---- 806

Query: 247  WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                 G    A +L E+ V+ +        PD ++Y  +I+  CK   + +A++ F+DM+
Sbjct: 807  ---KSGKVIEANQLLEDMVDKH------VKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQ 857

Query: 307  SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
             R ++P+ + Y++L+ GY + GR  +   LF  + ++   PD  +++ +I+++ K     
Sbjct: 858  KRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHV 917

Query: 367  EALSLYGEMISMG---------VRPDNSC----ILEAAELFRTLHNTKFELDLTVFNCLV 413
            + L L  +M+  G         V  D  C    + E  ++   +      L L   + LV
Sbjct: 918  KTLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLV 977

Query: 414  DGLCKSWRLRSAWELFKKLPRYGPEPN 440
                K+ ++  A  + K + R+   P+
Sbjct: 978  RCFHKAGKMDGAARVLKSMVRFKWVPD 1004



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 132/287 (45%), Gaps = 28/287 (9%)

Query: 197 ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA-KGNTS 255
           + +  +IDG  K G  ++    FL  K  G          ++ + CC     D  K N  
Sbjct: 167 VVFELLIDGYKKKGLFDEAVSFFLGAKRNGF---------VVGLLCCNGLLSDLLKANK- 216

Query: 256 AALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV 315
             LEL   F NG  E  V+   DV +Y  +IN+  +     + K L  +M+ +G  P +V
Sbjct: 217 --LELFWRFYNGMLEANVL--HDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLV 272

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
            Y+ +I G C  G +D+A +L   ++ +G + D  +Y+ LI+ + K ++  EA  +  EM
Sbjct: 273 TYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEM 332

Query: 376 ISMGVRPDNSCIL----------EAAELFRT---LHNTKFELDLTVFNCLVDGLCKSWRL 422
            S G++P +              ++ E FR    +     +L+L  +N LV G+CK   +
Sbjct: 333 FSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDM 392

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
             A  L  ++   G +P+  TY  MI G   E    +  DLL +M++
Sbjct: 393 EKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKK 439



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 91/226 (40%), Gaps = 40/226 (17%)

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           VV+  LIDGY   G  D+A   F+  +  G +      N L++   K  K+E     Y  
Sbjct: 167 VVFELLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNG 226

Query: 375 MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
           M+   V                LH      D+  +  L++   ++   +    L  ++  
Sbjct: 227 MLEANV----------------LH------DVYTYTHLINAHFRAGNAKEGKRLLFEMEE 264

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLK 476
            G  P++VTY V+I GLC  G +++A++L   M++                  K + C +
Sbjct: 265 KGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTE 324

Query: 477 AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
           A  +L +M  + +KP  +  + L +   +  +  E   +    L+R
Sbjct: 325 AKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLAR 370


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 135/490 (27%), Positives = 221/490 (45%), Gaps = 55/490 (11%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIGLLPDFVS 124
           EL +   F   M+     P + +  SL+  L   GK +    +   E L   G +PD ++
Sbjct: 125 ELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRV--MEILEDSGAVPDVIT 182

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N+L++ +CK   +  A   L R+     SPDVVT   ++R LC  GK  EA  +  + +
Sbjct: 183 YNVLISGYCKTGEIGSALQLLDRM---SVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQM 239

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
             +C     P+VI Y  +I+  CK+  V +   L  +M+ +G  PD   YN LI   C  
Sbjct: 240 QREC----YPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGIC-- 293

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                 +G    A+     F+N     G  C P+V+++  I+ S+C       A++   +
Sbjct: 294 -----KEGRLDEAIR----FLNHMPSYG--CQPNVITHNIILRSMCSTGRWMDAEKFLAE 342

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M  +G  P VV ++ LI+  C  G I  A  +   +   GC P++ SYN L+++  K +K
Sbjct: 343 MIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKK 402

Query: 365 VEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNC 411
           +E A+     M+S G  PD             +  +  A E+   L +      L  +N 
Sbjct: 403 MERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNT 462

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE-- 469
           ++DGL K  +   A +L  ++   G +P+++TY+ ++ GL  EG +++A     D+EE  
Sbjct: 463 VIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMG 522

Query: 470 ----------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECM 513
                           K R+ ++AI+ L  M  R  KP E +  IL E L  +    E +
Sbjct: 523 VKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEAL 582

Query: 514 NLLPSFLSRN 523
            LL    SR 
Sbjct: 583 ELLNELCSRG 592



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 160/373 (42%), Gaps = 50/373 (13%)

Query: 164 IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
           +R L   G+  E        V   CR + IP++I   S+I GLCK G   K   +   ++
Sbjct: 117 LRRLVRNGELEEGFKFLEDMV---CRGD-IPDIIACTSLIRGLCKTGKTWKATRVMEILE 172

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
             G  PD   YN LI  YC         G   +AL+L +              PDV++Y 
Sbjct: 173 DSGAVPDVITYNVLISGYC-------KTGEIGSALQLLDRMS---------VSPDVVTYN 216

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
           +I+ +LC    + +A E+      R   PDV+ Y+ LI+  C    +  A KL   +  +
Sbjct: 217 TILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDK 276

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCILEAAELFRTLHN 399
           GC PD  +YN LIN   K  +++EA+     M S G +P+    N  +       R +  
Sbjct: 277 GCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDA 336

Query: 400 TKFELDL---------TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
            KF  ++           FN L++ LC+   +  A ++ +K+P++G  PN ++Y  ++  
Sbjct: 337 EKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHA 396

Query: 451 LCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCH 510
           LC +  +E                 +AIE L  M  R   PD +T + L   L KD    
Sbjct: 397 LCKDKKME-----------------RAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVD 439

Query: 511 ECMNLLPSFLSRN 523
             + +L    S+ 
Sbjct: 440 VAVEILNQLGSKG 452



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 148/350 (42%), Gaps = 40/350 (11%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  +  A+   + M      P + ++N L+  +  +      I     + + G  P+ ++
Sbjct: 260 ESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVIT 319

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            NI++   C      DA   L  ++RK  SP VVT   LI  LC +G    A  +  K  
Sbjct: 320 HNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMP 379

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD-MKGRGIYPDAFVYNSLIRVYC- 242
              C     PN + Y  ++  LCKD  + +  + +LD M  RG YPD   YN+L+   C 
Sbjct: 380 QHGC----TPNSLSYNPLLHALCKDKKMERA-IEYLDIMVSRGCYPDIVTYNTLLTALCK 434

Query: 243 ---------------------------CAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
                                        ++     G T  A++L +E + G G      
Sbjct: 435 DGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDE-MKGKG-----L 488

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
            PD+++Y +++  L ++  VD+A   F D++  G+ P+ + Y+S++ G C   +   A  
Sbjct: 489 KPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAID 548

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
               + + GC P  +SY  LI   +     +EAL L  E+ S GV   +S
Sbjct: 549 FLAYMVARGCKPTETSYMILIEGLAYEGLAKEALELLNELCSRGVVKKSS 598



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 128/287 (44%), Gaps = 17/287 (5%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DA  F   MI    +P + +FN L+  L  K      I + E++   G  P+ +S N L+
Sbjct: 335 DAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLL 394

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           +  CK   +  A   L  ++ +   PD+VT   L+  LC  GK   A  +  +  +  C 
Sbjct: 395 HALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCS 454

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
           P +I     Y ++IDGL K G  +    L  +MKG+G+ PD   Y++L       V    
Sbjct: 455 PVLIT----YNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTL-------VGGLS 503

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
            +G    A+    +      E+GV   P+ ++Y SI+  LCK     +A +    M +RG
Sbjct: 504 REGKVDEAIAFFHDL----EEMGV--KPNAITYNSIMLGLCKARQTVRAIDFLAYMVARG 557

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
             P    Y  LI+G    G   +A +L   + S G +  +S+   ++
Sbjct: 558 CKPTETSYMILIEGLAYEGLAKEALELLNELCSRGVVKKSSAEQVVV 604



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/205 (19%), Positives = 78/205 (38%), Gaps = 31/205 (15%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++  A+ + + M+     P + ++N+LL AL         + +  +L + G  P  ++ N
Sbjct: 402 KMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYN 461

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            +++   K+    DA   L  +  K   PD++T   L+ GL  +GK  EA   F      
Sbjct: 462 TVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEM 521

Query: 187 DCRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKV 215
             +PN I                               P    Y  +I+GL  +G   + 
Sbjct: 522 GVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEA 581

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRV 240
             L  ++  RG+   +     ++++
Sbjct: 582 LELLNELCSRGVVKKSSAEQVVVKI 606


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 179/364 (49%), Gaps = 41/364 (11%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVF--SPDVVTLGCLIRG 166
           L  R++ +  +PD +S N ++   C      +A   + R+ ++    SPDVV+   +I G
Sbjct: 182 LLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHG 241

Query: 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
              QG+ ++A  LF + V    +  V+P+V  Y SI+D LCK   ++K   +   M  +G
Sbjct: 242 FFKQGEVSKACNLFNEMV----QKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKG 297

Query: 227 IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII 286
           + PD   YN++I  Y C+ +W+++            +        G+I  PD +++ S +
Sbjct: 298 VEPDGVTYNAIIHGYSCSGHWKES-----------AKMFRKMTSKGLI--PDTVTFSSFM 344

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           +SLCK      A+E+F  M ++G +PD+V YS L+ GY   GR  D   LF S+  +G +
Sbjct: 345 SSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIV 404

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406
            +    N LI++++K   ++EA+ ++ EM   GVRP                      ++
Sbjct: 405 SNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRP----------------------NV 442

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             ++ L+   C+  RL  A E F ++   G EPN   Y  +I G C+ G + KA + + +
Sbjct: 443 VTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISE 502

Query: 467 MEEK 470
           M  K
Sbjct: 503 MMSK 506



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 121/506 (23%), Positives = 218/506 (43%), Gaps = 87/506 (17%)

Query: 70  DALC----------FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           DALC              M+     P   ++N+++   +   ++     +  ++ + GL+
Sbjct: 275 DALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLI 334

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V+ +  M+  CK     DA      +  K   PD+V+   L+ G   +G+F + + L
Sbjct: 335 PDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNL 394

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F           ++ N  C   +I    K G +++  ++F +M+G+G+ P+   Y++LI 
Sbjct: 395 FHSMA----DKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLIS 450

Query: 240 VYCCAVNWEDAKGNTSAALEL--------HEEFVNG---NGEL------------GVICH 276
            +C      DA    S  + +        +   ++G   +G+L              +  
Sbjct: 451 AFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHR 510

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+++ + SII+SLC +  V  A+++F  +   G  P +V ++SLIDGYCL+G+++ A  +
Sbjct: 511 PNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGV 570

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------- 383
             ++ S G  PD  + NTL++ Y K  K+++ L L+ EM+   V+P              
Sbjct: 571 LDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLR 630

Query: 384 -----------------------------------NSCILEAAELFRTLHNTKFELDLTV 408
                                              N    EA  LF  L     + D+T+
Sbjct: 631 AGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITI 690

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
            N +++ L K  R   A +LF  +   G  PNV TY VMI  L  EG +E+A  +   ME
Sbjct: 691 LNTMINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSME 750

Query: 469 EKIRECLKAIELLHKMAKRYVKPDEI 494
           +    C  +  LL+ + +  ++  +I
Sbjct: 751 KS--GCAPSSRLLNDIIRMLLQKGDI 774



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 142/329 (43%), Gaps = 41/329 (12%)

Query: 147 RILRKVFSPDVVTLGCLIRGL----CMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202
           RI R+   P V  L     G+    C + +  +   L   FVA   R  +    I   + 
Sbjct: 109 RICREEAGPRVAPLTVRTYGILMDCCCRARRPD---LGPAFVARLLRAGLKTGTIQATTF 165

Query: 203 IDGLCKDGFVNK-VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261
           +  LC     ++ V VL   M      PDA  YN++I+  C           +  AL++ 
Sbjct: 166 LKCLCHAKRTDEAVDVLLHRMSELSCVPDAISYNTVIKSLC-------GDSRSQEALDMV 218

Query: 262 EEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
           +      G     C PDV+S+ ++I+   K   V KA  LF +M  +G++PDV  Y+S++
Sbjct: 219 QRMAKEGGR----CSPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIV 274

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
           D  C    +D A  +   +  +G  PD  +YN +I+ YS     +E+  ++ +M S G+ 
Sbjct: 275 DALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLI 334

Query: 382 PDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
           PD                         F+  +  LCK  R + A E+F+ +   G  P++
Sbjct: 335 PDT----------------------VTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDI 372

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           V+Y++++ G   EG      +L   M +K
Sbjct: 373 VSYSILLHGYATEGRFADMNNLFHSMADK 401



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 150/324 (46%), Gaps = 28/324 (8%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLL------GALAGKKYYVNFICLSERLNTIGLLP 120
            L DA+  F+ MI +   P    ++SL+      G L   K ++     SE ++     P
Sbjct: 457 RLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFI-----SEMMSKGLHRP 511

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           + V  + +++  C    V DA      ++     P +VT   LI G C+ GK  +A G+ 
Sbjct: 512 NIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVL 571

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
              V+    P+V+ N     +++ G CK G ++   +LF +M  + + P    YN ++  
Sbjct: 572 DAMVSVGIEPDVVTN----NTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDG 627

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
              A       G TSAA ++  E ++    +      D+ +Y  ++  LC++ L D+A  
Sbjct: 628 LLRA-------GRTSAAKKMFHEMIDSGTAV------DIDTYKILLKGLCRNDLTDEAIT 674

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           LF  + +     D+ + +++I+    + R ++A  LF +I + G +P+ S+Y  +I +  
Sbjct: 675 LFHKLGAMDCKFDITILNTMINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIRNLL 734

Query: 361 KIEKVEEALSLYGEMISMGVRPDN 384
           K   VEEA +++  M   G  P +
Sbjct: 735 KEGSVEEADTMFSSMEKSGCAPSS 758



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 90/392 (22%), Positives = 162/392 (41%), Gaps = 47/392 (11%)

Query: 91  NSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILR 150
           N L+ A A +      + +   +   G+ P+ V+ + L++ FC+M  ++DA     +++ 
Sbjct: 411 NILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMIS 470

Query: 151 KVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDG 210
               P+      LI G CM G   +A    ++ ++        PN++ ++SII  LC +G
Sbjct: 471 IGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHR---PNIVFFSSIIHSLCIEG 527

Query: 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE------- 263
            V   + +F  +   G  P    +NSLI  YC     E A G   A + +  E       
Sbjct: 528 RVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNN 587

Query: 264 -FVNGNGELGVI--------------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
             V+G  + G I                P  ++Y  +++ L +      AK++F +M   
Sbjct: 588 TLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDS 647

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G   D+  Y  L+ G C     D+A  LF  + +  C  D +  NT+IN+  K+ + EEA
Sbjct: 648 GTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTMINALYKVRRREEA 707

Query: 369 LSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
             L+  + + G+ P                      +++ +  ++  L K   +  A  +
Sbjct: 708 NDLFAAISTSGLVP----------------------NVSTYGVMIRNLLKEGSVEEADTM 745

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
           F  + + G  P+      +I  L  +G I KA
Sbjct: 746 FSSMEKSGCAPSSRLLNDIIRMLLQKGDIVKA 777


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 131/514 (25%), Positives = 229/514 (44%), Gaps = 101/514 (19%)

Query: 74  FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
            F+ M+     P + +FN L+ AL  K + +    L +++   G+ P+  + NI +   C
Sbjct: 282 LFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLC 341

Query: 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
           K   +  A   LG + R+   PDVVT   +I GLC + +  EA     K V     PN  
Sbjct: 342 KEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDF 401

Query: 194 -------------------------------PNVICYASIIDGLCKDGFVNKVRVLFLDM 222
                                          P+   Y S+++G C+DG  ++   +F D 
Sbjct: 402 TYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDG 461

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF---------------VNG 267
            G+G+ P   VYN+LI+  C        +G    AL+L  E                +NG
Sbjct: 462 LGKGLRPSIIVYNTLIKGLC-------QQGLILPALQLMNEMAEKGCKPDIWTYNLIING 514

Query: 268 NGELGVI--------------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
             ++G +              C PD+ +Y ++++  C+ + +D A EL   M S+G+ PD
Sbjct: 515 LCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPD 574

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           V+ Y++L++G C   + ++  ++F ++  +GC P+  +YNT+I S    +KV EA+ L G
Sbjct: 575 VITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLG 634

Query: 374 EMISMGVRPD---------NSCIL----EAAELFRTLHNTKFELDLT--VFNCLVDGLCK 418
           EM S G+ PD           C +     A  LFR +   ++++  T   +N ++    +
Sbjct: 635 EMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEK-QYDVSHTTATYNIIISAFSE 693

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-------- 470
              ++ A  LF ++ + G +P+  TY V+I G C  G + + Y  L +  EK        
Sbjct: 694 QLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTT 753

Query: 471 ---IRECL-------KAIELLHKMAKRYVKPDEI 494
              +  CL       +A+ ++H M ++ + PD +
Sbjct: 754 FGRVLNCLCVEHKVQEAVGIIHLMVQKDIVPDTV 787



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 112/461 (24%), Positives = 180/461 (39%), Gaps = 101/461 (21%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           ER++     P   S N +MN   +    + A     R+  K    DV T    I+  C  
Sbjct: 179 ERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCRT 238

Query: 171 GKFTEASGLFTKFVAFDCRPNVI-------------------------------PNVICY 199
           G+   A  L        C  N +                               P+V  +
Sbjct: 239 GRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTTF 298

Query: 200 ASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA--------- 250
             ++  LCK GFV +   LF  +  RG+ P+ F +N  I+  C   + + A         
Sbjct: 299 NKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSR 358

Query: 251 -------------------KGNTSAALELHEEFVNGNGELGVICHPDVL----------- 280
                              K     A E   + VNG  E     +  ++           
Sbjct: 359 EGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVD 418

Query: 281 ------------------SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
                             +YCS++N  C+D   D+A  +F D   +G+ P ++VY++LI 
Sbjct: 419 ANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIK 478

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
           G C  G I  A +L   +  +GC PD  +YN +IN   K+  + +A  L G+ I+ G  P
Sbjct: 479 GLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIP 538

Query: 383 D----NSCI--------LEAA-ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
           D    N+ +        L++A EL   + +     D+  +N L++GLCK+ +     E+F
Sbjct: 539 DIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIF 598

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           K +   G  PN++TY  +I  LC    + +A DLL +M+ K
Sbjct: 599 KAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSK 639



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 165/361 (45%), Gaps = 48/361 (13%)

Query: 170 QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYP 229
           +GK  EA   F +   F+C P+V      Y +I++ L + G+ N+   +++ MK + +  
Sbjct: 168 KGKIQEAVDTFERMDLFNCDPSVYS----YNAIMNILVEFGYFNQAHKVYMRMKDKKVES 223

Query: 230 DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSL 289
           D + Y   I+ +C         G   AAL L    +     LG  C  + ++YC+++   
Sbjct: 224 DVYTYTIRIKSFC-------RTGRPYAALRL----LRNMPVLG--CFSNAVAYCTVVTGF 270

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
            +    D+A+ELF +M    + PDV  ++ L+   C  G + ++ +LF  +   G  P+ 
Sbjct: 271 YEFGDNDRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNL 330

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRT 396
            ++N  I    K   ++ A+ L G +   G+RPD              S ++EA E    
Sbjct: 331 FTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHK 390

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           + N  FE +   +N ++DG CK   +  A  + K     G +P+  TY  ++ G C +G 
Sbjct: 391 MVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGD 450

Query: 457 IEKAYDLLPD-MEEKIREC-----------------LKAIELLHKMAKRYVKPDEITVSI 498
            ++A  +  D + + +R                   L A++L+++MA++  KPD  T ++
Sbjct: 451 PDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNL 510

Query: 499 L 499
           +
Sbjct: 511 I 511



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 89/246 (36%), Gaps = 66/246 (26%)

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
           VY   +  Y   G+I +A   F  ++   C P   SYN ++N   +     +A  +Y  M
Sbjct: 157 VYVEAMRFYGRKGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRM 216

Query: 376 ISMGVRPD-------------------------NSCIL---------------------- 388
               V  D                         N  +L                      
Sbjct: 217 KDKKVESDVYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDN 276

Query: 389 -EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
             A ELF  +       D+T FN LV  LCK   +  +  LF K+ + G  PN+ T+ + 
Sbjct: 277 DRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIF 336

Query: 448 ICGLCIEGGIEKAYDLL---------PDMEE---------KIRECLKAIELLHKMAKRYV 489
           I GLC EG +++A  LL         PD+           +    ++A E LHKM     
Sbjct: 337 IQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGF 396

Query: 490 KPDEIT 495
           +P++ T
Sbjct: 397 EPNDFT 402



 Score = 42.0 bits (97), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 39/81 (48%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  PD  +  +L++ FCK   V+  +  L   + K F P + T G ++  LC++ K  EA
Sbjct: 711 GCDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEA 770

Query: 177 SGLFTKFVAFDCRPNVIPNVI 197
            G+    V  D  P+ +  + 
Sbjct: 771 VGIIHLMVQKDIVPDTVNTIF 791


>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 137/471 (29%), Positives = 213/471 (45%), Gaps = 37/471 (7%)

Query: 12  AFKVKPSSSLRNSKKPISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDA 71
           +F ++  S  R S+   +L   N  SS     ++ V   T +  +  EN K    EL   
Sbjct: 148 SFTIRMKSFCRTSRPHAALRLLNNMSS-QGCEMNVVAYCTVVGGFYEENFKDEGYEL--- 203

Query: 72  LCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131
              F  M+    +  + +FN LL  L  K        L +++   G+LP+  + N  +  
Sbjct: 204 ---FGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQG 260

Query: 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
            C+   +  A   +GR++ +   PDVVT   LI GLC   KF EA     K V       
Sbjct: 261 LCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLV----NEG 316

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
           + P+   Y ++I G CK G V     + ++    G  PD F Y SLI   C        +
Sbjct: 317 LEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLC-------HE 369

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
           G T+ AL L  E       LG    P+V+ Y ++I  L    L+ +A +L  +M  +G+I
Sbjct: 370 GETNRALALFNE------ALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLI 423

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           P+V  ++ L++G C MG + DA  L   + S+G  PD  ++N LI+ YS   K+E AL +
Sbjct: 424 PEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEI 483

Query: 372 YGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
              M+  GV PD              S   +  E ++T+       +L  FN L++ LC+
Sbjct: 484 LDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCR 543

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
             +L  A  L +++      P+ VT+  +I G C  G ++ AY L   MEE
Sbjct: 544 YHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEE 594



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 149/351 (42%), Gaps = 69/351 (19%)

Query: 170 QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYP 229
           +GK  EA  +F +   +DC P V      Y +I+  L   G+ ++   +++ M+ RGI P
Sbjct: 89  KGKVQEAVNVFERMDFYDCEPTVFS----YNAIMSILVDSGYFDQAHKVYMRMRDRGITP 144

Query: 230 DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSL 289
           D + +   ++ +C             AAL L    +N     G  C  +V++YC+++   
Sbjct: 145 DVYSFTIRMKSFC-------RTSRPHAALRL----LNNMSSQG--CEMNVVAYCTVVGGF 191

Query: 290 CKDVLVDKAKELFLDMKS-----------------------------------RGIIPDV 314
            ++   D+  ELF  M +                                   RG++P++
Sbjct: 192 YEENFKDEGYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNL 251

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
             Y+  I G C  G +D A ++   +  +G  PD  +YN LI    K  K +EA    G+
Sbjct: 252 FTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGK 311

Query: 375 MISMGVRPDN------------SCILEAAELFRTLHNTKFEL---DLTVFNCLVDGLCKS 419
           +++ G+ PD+              +++ AE  R L N  F     D   +  L+DGLC  
Sbjct: 312 LVNEGLEPDSFTYNTLIAGYCKGGMVQLAE--RILVNAVFNGFVPDEFTYRSLIDGLCHE 369

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
                A  LF +    G +PNV+ Y  +I GL  +G I +A  L  +M EK
Sbjct: 370 GETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEK 420



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 152/355 (42%), Gaps = 53/355 (14%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E E N AL  FN  +     P +  +N+L+  L+ +   +    L+  ++  GL+P+  +
Sbjct: 369 EGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQT 428

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            NIL+N  CKM  VSDA   +  ++ K + PD+ T   LI G   Q K   A  +    V
Sbjct: 429 FNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILD--V 486

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
             D    V P+V  Y S+++GLCK      V   +  M  +G  P+ F +N L+   C  
Sbjct: 487 MMD--NGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRY 544

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA------ 298
              + A G       L EE  N +       +PD +++ ++I+  CK+  +D A      
Sbjct: 545 HKLDKALG-------LLEEMKNKS------VNPDAVTFGTLIDGFCKNGDLDGAYTLFRK 591

Query: 299 ------------------------------KELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                                         ++LF +M  R + PD   Y  ++DG+C  G
Sbjct: 592 MEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTG 651

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            +D   K  + +   G IP  ++   +IN     ++V EA  +   M+  G+ P+
Sbjct: 652 NVDLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPE 706



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 126/278 (45%), Gaps = 31/278 (11%)

Query: 199 YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR-VYCCAVNWEDAKGNTSAA 257
           Y SII+ L   G    +  + +DM+         V N ++  VY  A+     KG    A
Sbjct: 43  YRSIIEKLGLYGKFEAMEEVLVDMRQN-------VGNHMLEGVYVGAMKNYGRKGKVQEA 95

Query: 258 LELHE--EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV 315
           + + E  +F +        C P V SY +I++ L      D+A ++++ M+ RGI PDV 
Sbjct: 96  VNVFERMDFYD--------CEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGITPDVY 147

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
            ++  +  +C   R   A +L  ++ S+GC  +  +Y T++  + +    +E   L+G+M
Sbjct: 148 SFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYELFGKM 207

Query: 376 ISMGVRP-------------DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRL 422
           ++ GV                   + E  +L   +       +L  +N  + GLC+   L
Sbjct: 208 LASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGEL 267

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
            +A  +  +L   GP+P+VVTY  +I GLC     ++A
Sbjct: 268 DAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEA 305



 Score = 40.0 bits (92), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 50/110 (45%)

Query: 88  PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGR 147
           P++N ++ A   K        L + +    L PD  +  ++++ FCK   V   +  L  
Sbjct: 603 PTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVDLGYKFLLE 662

Query: 148 ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           ++   F P + TLG +I  LC++ +  EA+G+  + V     P  +  + 
Sbjct: 663 MMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPEAVNTIF 712


>gi|357498031|ref|XP_003619304.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494319|gb|AES75522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 805

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 133/468 (28%), Positives = 216/468 (46%), Gaps = 94/468 (20%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGAL-AGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +++A+  FN M+ M+ TP +  FN +L  L   K +Y   + LS ++ + G+ PD  +L+
Sbjct: 186 VDNAVLSFNRMLQMRHTPSIVEFNKILTYLIKTKNHYPTVLSLSTQMESKGVKPDLFTLS 245

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           IL+NC+   +G               + P+ +TL  LI+GLC+ GK  EA       +A 
Sbjct: 246 ILINCYYFKMG---------------YEPNTITLTTLIKGLCLNGKVNEALLFHDHVLAL 290

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
               N +     Y  +I+GLCK G       +   ++G+ +  +  +Y+++I   C    
Sbjct: 291 GFHLNHV----TYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTVIDGLCKDKL 346

Query: 247 WEDAKG--------------NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
             DA G               T  A  L  E V  N       +P+V ++  ++++LCKD
Sbjct: 347 VIDAYGLYSEMIVKRIPPTVVTFKAFSLFHEMVLKN------INPNVYTFNILVDALCKD 400

Query: 293 -----------VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
                       +VD+A  LF +M  +   P+ V Y++LIDG+C  GR+  A KL   + 
Sbjct: 401 GKIKEAKNVIIKMVDEALNLFTEMHCK---PNTVSYNTLIDGFCKSGRLSHAWKLLDQMR 457

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK 401
             G  P+  +YN+L+++  K   V++A++L       G++PD                  
Sbjct: 458 DRGQPPNVITYNSLLHALCKNHHVDKAIALVNNFKDQGIQPD------------------ 499

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
               +  +N LVDGLCK  RL+ A  +F+ L   G      TY +MI GLC+EG +++A 
Sbjct: 500 ----MHTYNTLVDGLCKQGRLKDAQLIFQDLLIKGYNLPTWTYNIMINGLCLEGLLDEAE 555

Query: 462 DLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITV-SILEELLNKDEN 508
            LL  ME+    C+               PD +T  +I+  L  KDEN
Sbjct: 556 TLLSKMEDN--GCI---------------PDVVTYQTIIHALFEKDEN 586


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/399 (28%), Positives = 192/399 (48%), Gaps = 58/399 (14%)

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
           LP+ V+ N ++  +CK+  + +AF  L  +  +   P+++T   +I GLC  G+  E SG
Sbjct: 235 LPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSG 294

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           +  +      R    P+ + Y ++++G CK G  ++  VL  +M   G+ PD   Y SLI
Sbjct: 295 VLAEMD----RKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLI 350

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEF-VNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
              C A       GN + A+E  ++  V G         P+ ++Y S+IN   +   +D+
Sbjct: 351 NTMCKA-------GNLNRAMEFFDQMHVRG-------LRPNGVTYTSLINGFSQKGFMDE 396

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A  ++ +M   G  P +V Y++L++G+C+ GR+++A  L   +E +G  PD  SY+T+I 
Sbjct: 397 AYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIA 456

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
            + + ++++ A  +  EM+  GV PD                         ++ L+ GLC
Sbjct: 457 GFCRYQELDRAFQMNAEMVEKGVSPD----------------------AITYSSLIQGLC 494

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKA 477
           +  RL  A +LF+++      P+  TYT +I G C EG          D+ E       A
Sbjct: 495 EQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEG----------DLNE-------A 537

Query: 478 IELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           + L  +M K+   PD +T ++L   LNK     E   LL
Sbjct: 538 LNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLL 576



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 122/455 (26%), Positives = 210/455 (46%), Gaps = 56/455 (12%)

Query: 63  SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF 122
           +G +E+   L FF  M   +  P + ++N+++GA    K       L   +   GL P+ 
Sbjct: 216 AGNLEM--GLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNL 273

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           ++ N+++N  C++  + +    L  + RK F+PD VT   L+ G C  G F +A  L ++
Sbjct: 274 LTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSE 333

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
            +    R  + P+V+ Y S+I+ +CK G +N+    F  M  RG+ P+   Y SLI  + 
Sbjct: 334 ML----RNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFS 389

Query: 243 CAVNWEDA--------KGNTSAALELHEEFVNGN--------------GELGVICHPDVL 280
                ++A        +      +  +   +NG+              G  G    PDV+
Sbjct: 390 QKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVV 449

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
           SY +II   C+   +D+A ++  +M  +G+ PD + YSSLI G C   R+++A  LF  +
Sbjct: 450 SYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEM 509

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCI 387
            ++  +PD  +Y +LIN Y K   + EAL+L+ EMI  G  PD              +  
Sbjct: 510 LNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQART 569

Query: 388 LEAAEL---------------FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
            EA  L               + TL  +  +++      L+ G C    +  A ++F+ +
Sbjct: 570 REAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESM 629

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            +   +PN   Y V+I G C +G + KA+ L  +M
Sbjct: 630 IKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEM 664



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 173/364 (47%), Gaps = 47/364 (12%)

Query: 193 IPNVICYASIIDGL--CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
           +P V+ Y +I+D +  C+   +   +V + +M   G+  + F YN LIR +C A      
Sbjct: 164 MPGVLSYNAILDSIVRCRKPVIFAEKV-YREMIASGVSLNVFSYNILIRGFCAA------ 216

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
            GN    L   EE           C P+V++Y ++I + CK   +D+A +L   M   G+
Sbjct: 217 -GNLEMGLRFFEEMERNR------CLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGL 269

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
            P+++ Y+ +I+G C +GRI++   +   ++ +G  PD  +YNTL+N Y K+    +AL 
Sbjct: 270 EPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALV 329

Query: 371 LYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
           L+ EM+  G+ PD                +  A E F  +H      +   +  L++G  
Sbjct: 330 LHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFS 389

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK------- 470
           +   +  A+ ++ ++ R G  P +VTY  ++ G C+ G +E+A  LL  ME K       
Sbjct: 390 QKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVV 449

Query: 471 -----------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519
                       +E  +A ++  +M ++ V PD IT S L + L +    +E  +L    
Sbjct: 450 SYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEM 509

Query: 520 LSRN 523
           L+++
Sbjct: 510 LNKS 513



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 157/353 (44%), Gaps = 46/353 (13%)

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA-KGN 253
           NV  Y  +I G C  G +      F +M+     P+   YN++I  YC     ++A K  
Sbjct: 202 NVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLL 261

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
            S  LE  E              P++L+Y  +IN LC+   +++   +  +M  +G  PD
Sbjct: 262 RSMGLEGLE--------------PNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPD 307

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
            V Y++L++GYC +G    A  L   +   G  PD  +Y +LIN+  K   +  A+  + 
Sbjct: 308 GVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFD 367

Query: 374 EMISMGVRPDN-------------SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           +M   G+RP+                + EA  ++  +  + F   +  +N L++G C S 
Sbjct: 368 QMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSG 427

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK---------- 470
           R+  A  L + +   G  P+VV+Y+ +I G C    +++A+ +  +M EK          
Sbjct: 428 RMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYS 487

Query: 471 --------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
                    R   +A +L  +M  + + PDE T + L     K+ + +E +NL
Sbjct: 488 SLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNL 540



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 103/360 (28%), Positives = 167/360 (46%), Gaps = 33/360 (9%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +++A   ++ MI     P + ++N+LL            I L   +   GL PD VS + 
Sbjct: 394 MDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYST 453

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++  FC+   +  AF     ++ K  SPD +T   LI+GLC Q +  EA  LF + +   
Sbjct: 454 IIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEML--- 510

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
              +++P+   Y S+I+G CK+G +N+   L  +M  +G  PD   YN LI         
Sbjct: 511 -NKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQART 569

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCS---------IINSLCKDVLVDKA 298
            +AK      L   E   NG      I +  ++  CS         +I   C   L+++A
Sbjct: 570 REAK-RLLLKLFYDESIPNG------ITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEA 622

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
            ++F  M  R   P+  VY+ +I G+C  G +  A KL+  +   G IP T +   L+ +
Sbjct: 623 DQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKA 682

Query: 359 -YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL---HNTKFELDLTVFNCLVD 414
            YS  E ++E L+L   +I   +R   SC L  AEL + L   ++ +  +D  VFN L +
Sbjct: 683 LYS--EGMDEQLNL---VIRDILR---SCKLSDAELSKALVQINHKEGNID-AVFNLLTE 733


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 120/408 (29%), Positives = 192/408 (47%), Gaps = 50/408 (12%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           + + G +PD V+L+ +++   K   +  A      +  +  +P+ V    LI GLC   K
Sbjct: 117 MTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARK 176

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
              A  +  +     C P+ I     Y  +IDGLCK G V   R  F +M   G  PD +
Sbjct: 177 MDCALEMLAQMKKAFCTPDTIT----YNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVY 232

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALE--LHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
            YN LI  +C A       GNT AA      E  +NG       C  D+ +Y +I++ L 
Sbjct: 233 TYNILISGFCKA-------GNTDAASHSLAQETTING-------CTIDIHTYTAIVDWLA 278

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K+  +++A  L   + + G  P +  Y++L++G C MGR+++A  L   I   GC PD  
Sbjct: 279 KNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVV 338

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTL 397
           +Y +LI+   K ++  EA  L+ EM   G+  D  C             I +A+ +++T+
Sbjct: 339 TYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTM 398

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
            +     D+   + ++DGL K+ R+ +A  +FK +   G  PN V Y+ +I GLC     
Sbjct: 399 TSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLC----- 453

Query: 458 EKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505
                       K R+   A+E+L +M K +  PD IT +IL + L K
Sbjct: 454 ------------KARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCK 489



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 114/411 (27%), Positives = 183/411 (44%), Gaps = 44/411 (10%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIGLL 119
           KSG+VE   A  FF+ M+     P + ++N L+     AG     +   L++     G  
Sbjct: 208 KSGDVEAARA--FFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASH-SLAQETTINGCT 264

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
            D  +   +++   K   + +A   + +I     +P + T   L+ GLC  G+  EA  L
Sbjct: 265 IDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDL 324

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             K V   C P+V+     Y S+IDGL K+    +   LF +M  RG+  D   Y +LIR
Sbjct: 325 LRKIVDNGCTPDVVT----YTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIR 380

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
                       G    A  +++   +        C PDV++  ++I+ L K   +  A 
Sbjct: 381 ELL-------QTGKIPQASSVYKTMTSHG------CVPDVVTLSTMIDGLSKAGRIGAAV 427

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            +F  M++RG+ P+ VVYS+LI G C   ++D A ++   ++   C PDT +YN LI+  
Sbjct: 428 RIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGL 487

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            K   VE A + + EM+  G +P                      D+  +N L+ G CK+
Sbjct: 488 CKSGDVEAARAFFDEMLEAGCKP----------------------DVYTYNILISGFCKA 525

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
               +A  +F  +       NVVTY  +I GLC    + KA      M+E+
Sbjct: 526 GNTDAACGVFDDMSSSRCSANVVTYGALISGLCKRRQLTKASLYFQHMKER 576



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 111/400 (27%), Positives = 178/400 (44%), Gaps = 48/400 (12%)

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           + +A   + +I     +P + T   L+ GLC  G+  EA  L  K V   C P+V+    
Sbjct: 2   IEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVT--- 58

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            Y S+IDGL K+    +   LF +M  RG+  D   Y +LIR            G    A
Sbjct: 59  -YTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELL-------QTGKIPQA 110

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
             +++   +        C PDV++  ++I+ L K   +  A  +F  M++RG+ P+ VVY
Sbjct: 111 SSVYKTMTSHG------CVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVY 164

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           S+LI G C   ++D A ++   ++   C PDT +YN LI+   K   VE A + + EM+ 
Sbjct: 165 SALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLE 224

Query: 378 MGVRPDN-------SCILEAAELFRTLHNTKFE-------LDLTVFNCLVDGLCKSWRLR 423
            G +PD        S   +A       H+   E       +D+  +  +VD L K+ ++ 
Sbjct: 225 AGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIE 284

Query: 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHK 483
            A  L +K+   G  P + TY  ++ GLC  G +E                 +AI+LL K
Sbjct: 285 EAVALMEKITANGCTPTIATYNALLNGLCKMGRLE-----------------EAIDLLRK 327

Query: 484 MAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
           +      PD +T + L + L K++   E   L      R 
Sbjct: 328 IVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRG 367



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 149/326 (45%), Gaps = 23/326 (7%)

Query: 47  VEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNF 106
           +   T ++ +L++N K     + +A+     +     TP + ++N+LL  L         
Sbjct: 267 IHTYTAIVDWLAKNKK-----IEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEA 321

Query: 107 ICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166
           I L  ++   G  PD V+   L++   K     +A+     +  +  + D V    LIR 
Sbjct: 322 IDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRE 381

Query: 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
           L   GK  +AS ++    +  C    +P+V+  +++IDGL K G +     +F  M+ RG
Sbjct: 382 LLQTGKIPQASSVYKTMTSHGC----VPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARG 437

Query: 227 IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII 286
           + P+  VY++LI   C A   +        ALE+  +           C PD ++Y  +I
Sbjct: 438 LAPNEVVYSALIHGLCKARKMD-------CALEMLAQMKKA------FCTPDTITYNILI 484

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           + LCK   V+ A+  F +M   G  PDV  Y+ LI G+C  G  D A  +F  + S  C 
Sbjct: 485 DGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCS 544

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLY 372
            +  +Y  LI+   K  ++ +A SLY
Sbjct: 545 ANVVTYGALISGLCKRRQLTKA-SLY 569



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 31/208 (14%)

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----N 384
           +I++A  L   I + GC P  ++YN L+N   K+ ++EEA+ L  +++  G  PD     
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 60

Query: 385 SCI---------LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
           S I          EA +LF+ +      LD   +  L+  L ++ ++  A  ++K +  +
Sbjct: 61  SLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSH 120

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKA 477
           G  P+VVT + MI GL   G I  A  +   ME                   K R+   A
Sbjct: 121 GCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCA 180

Query: 478 IELLHKMAKRYVKPDEITVSILEELLNK 505
           +E+L +M K +  PD IT ++L + L K
Sbjct: 181 LEMLAQMKKAFCTPDTITYNVLIDGLCK 208


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/392 (28%), Positives = 183/392 (46%), Gaps = 30/392 (7%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N+L+  L G+    N + + E +   G LPD V+  IL+   CK  G   A   L  +
Sbjct: 168 TYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEM 227

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
             K  +PD+VT   ++ G+C +G+  +A        ++ C PN +     Y  ++ GL  
Sbjct: 228 HDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTV----SYNIVLKGLFT 283

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
                    L  +M  +G  P+   +N LI   C        +G    A+E+ E+     
Sbjct: 284 AERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLC-------RRGLVEPAMEVLEQMPQYG 336

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                 C P+ LSY  ++++ CK   + KA E    M SRG  PD+V Y++L+   C  G
Sbjct: 337 ------CTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNG 390

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----- 383
            +D A +L   ++ +GC P   SYNT+I+  +K  K +EAL L  EM S G++PD     
Sbjct: 391 EVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYS 450

Query: 384 --------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
                      I EA   F  + +        ++N ++ GLCK     +A +LF  +   
Sbjct: 451 TIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISS 510

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           G  PN  TYT+++ GL  EG +++A +L   +
Sbjct: 511 GCMPNESTYTILVEGLAYEGLVKEARELFAQL 542



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 176/384 (45%), Gaps = 58/384 (15%)

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           LI+ LC  G+  +A  +              P+V+ Y +++ G C  G ++  R L  DM
Sbjct: 110 LIKKLCASGRTADARRVLAASG---------PDVMVYNAMVAGYCGAGQLDAARRLVADM 160

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE-FVNGNGELGVICHPDVLS 281
               + PDA+ YN+LIR  C        +G TS AL + E+ F  G       C PDV++
Sbjct: 161 P---VEPDAYTYNTLIRGLC-------GRGRTSNALAVLEDMFRRG-------CLPDVVT 203

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y  ++ + CK     +A +L  +M  +G  PD+V Y+ +++G C  GR++DA +   ++ 
Sbjct: 204 YTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLP 263

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCIL 388
           S GC P+T SYN ++      E+ E+A  L  EM   G  P+                + 
Sbjct: 264 SYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVE 323

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
            A E+   +       +   +N L+   CK  ++  A E  + +   G  P++V+Y  ++
Sbjct: 324 PAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLL 383

Query: 449 CGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVK 490
             LC  G ++ A +LL  +++                  K  +  +A+ELL +M  + ++
Sbjct: 384 TALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQ 443

Query: 491 PDEITVSILEELLNKDENCHECMN 514
           PD IT S +   L +++   E + 
Sbjct: 444 PDIITYSTIASGLCREDRIEEAVR 467



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 150/319 (47%), Gaps = 19/319 (5%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           + G VE  DA+ F   +      P   S+N +L  L   + + +   L E +   G  P+
Sbjct: 248 QEGRVE--DAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPN 305

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+ N+L++  C+   V  A   L ++ +   +P+ ++   L+   C Q K  +A     
Sbjct: 306 VVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVE 365

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
             V+  C     P+++ Y +++  LC++G V+    L   +K +G  P    YN++I   
Sbjct: 366 LMVSRGC----YPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVI--- 418

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
               +     G T  ALEL +E  +          PD+++Y +I + LC++  +++A   
Sbjct: 419 ----DGLTKAGKTKEALELLDEMTSKG------LQPDIITYSTIASGLCREDRIEEAVRT 468

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F  ++  GI P   +Y++++ G C      +A  LF  + S GC+P+ S+Y  L+   + 
Sbjct: 469 FCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNESTYTILVEGLAY 528

Query: 362 IEKVEEALSLYGEMISMGV 380
              V+EA  L+ ++ S GV
Sbjct: 529 EGLVKEARELFAQLCSRGV 547



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 126/279 (45%), Gaps = 40/279 (14%)

Query: 277 PDVLSYCS-IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
           P  +  C+ +I  LC       A+ +   + + G  PDV+VY++++ GYC  G++D AR+
Sbjct: 101 PAAVGPCAALIKKLCASGRTADARRV---LAASG--PDVMVYNAMVAGYCGAGQLDAARR 155

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------ 383
           L   +  E   PD  +YNTLI       +   AL++  +M   G  PD            
Sbjct: 156 LVADMPVE---PDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATC 212

Query: 384 -NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
             S   +A +L   +H+     D+  +N +++G+C+  R+  A E  K LP YG EPN V
Sbjct: 213 KRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTV 272

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEEK----------------IRECL--KAIELLHKM 484
           +Y +++ GL      E A  L+ +M  K                 R  L   A+E+L +M
Sbjct: 273 SYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQM 332

Query: 485 AKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
            +    P+ ++ + L     K +  H+ M  +   +SR 
Sbjct: 333 PQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRG 371



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 123/277 (44%), Gaps = 17/277 (6%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DA      M H    P + +FN L+  L  +      + + E++   G  P+ +S N L+
Sbjct: 289 DAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLL 348

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           + FCK   +  A   +  ++ +   PD+V+   L+  LC  G+   A  L  +     C 
Sbjct: 349 HAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCS 408

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
           P +I     Y ++IDGL K G   +   L  +M  +G+ PD   Y+++    C     E+
Sbjct: 409 PVLI----SYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCREDRIEE 464

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
           A   T   ++          ++G+   P    Y +I+  LCK      A +LF  M S G
Sbjct: 465 AV-RTFCKVQ----------DMGI--RPTAALYNAILLGLCKRRETHNAIDLFAYMISSG 511

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
            +P+   Y+ L++G    G + +AR+LF  + S G +
Sbjct: 512 CMPNESTYTILVEGLAYEGLVKEARELFAQLCSRGVV 548


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 138/537 (25%), Positives = 236/537 (43%), Gaps = 115/537 (21%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E E++ A   F+ M+     P + ++NSL+  L   +     + + + +   G++PD  +
Sbjct: 213 EGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRT 272

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            NI++  +C +  + +A   L ++      PDVVT   LI+  C  G+  EA  +F   V
Sbjct: 273 YNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMV 332

Query: 185 AFDCRPN-VIPNVIC--YAS--------------IIDGL--------------CKDGFVN 213
               +PN  I +++   YA+              I DG+               K G V+
Sbjct: 333 RKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVD 392

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK---------------------- 251
           K    F +M+  G+ PD   Y+++I + C     EDA                       
Sbjct: 393 KAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLI 452

Query: 252 ------GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
                 G      EL  E +N         HPD +   +I+++LCK+  V +A++ F  +
Sbjct: 453 HGLCSIGEWKKVEELAFEMINRG------IHPDAIFMNTIMDNLCKEGRVVEAQDFFDMV 506

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
              G+ PDVV Y++LIDGYC +G++D++ K    + S G  PD+ +YN+L+N Y K  +V
Sbjct: 507 IHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRV 566

Query: 366 EEALSLYGEMISMGVRP------------------------------------------- 382
           E+AL+LY EM    V+                                            
Sbjct: 567 EDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTV 626

Query: 383 -----DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
                +NSC+ EA  +F  L + +FELD+  F+ +++ L K  R+  A  LF  +   GP
Sbjct: 627 LGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGP 686

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEI 494
            P+V+TY++MI     EG +E++ +L   ME+    C     +L+ + +R ++  ++
Sbjct: 687 VPDVITYSLMIKSHIEEGLLEESDNLFLSMEKN--GCAADSHMLNIIVRRLLEKGDV 741



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 131/521 (25%), Positives = 212/521 (40%), Gaps = 87/521 (16%)

Query: 52  KLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAG-------KKYYV 104
           +L + +    +SG +   DAL  F+ ++       + +FNS+L  +A        +    
Sbjct: 14  ELERIILNRHRSGSLGREDALNLFDELLPQARPASVHAFNSVLTVVARADSSSSPRHSAA 73

Query: 105 NFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCL- 163
             + L   +   G+      + IL+ CFC +  +  AF A    L+  +    VTL  L 
Sbjct: 74  LAVSLFNTMVRSGVNMMAAIIGILIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLI 133

Query: 164 -----------------------------------IRGLCMQGKFTEASGLFTKFVAFDC 188
                                              I+GLC++ K  EA  L     A D 
Sbjct: 134 KGLCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTA-DG 192

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
             N  PNV+ Y ++IDG  K+G V+K   LF +M G+G+ PD   YNSLI   C      
Sbjct: 193 GYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLC------ 246

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
            A+    A   L   F  G         PD  +Y  +I   C    +++A  L   M   
Sbjct: 247 KAQAMDKAVAILQHMFDKG-------VMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGS 299

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G+ PDVV YS LI  YC +GR  +AR +F S+  +G  P+++ Y+ L++ Y+    + + 
Sbjct: 300 GLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDV 359

Query: 369 LSLYGEMISMGV-------------RPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDG 415
             L   MI  G+                +  + +A   F  +       D+  ++ ++  
Sbjct: 360 RDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHI 419

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL 475
           LCK+ R+  A   F ++   G  PN++++T +I GLC                  I E  
Sbjct: 420 LCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLC-----------------SIGEWK 462

Query: 476 KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           K  EL  +M  R + PD I ++ + + L K+    E  +  
Sbjct: 463 KVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFF 503



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 115/246 (46%), Gaps = 43/246 (17%)

Query: 284 SIINSLCKDVLVDKAKEL-FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
            +I  LC     D A ++ F  M   G  PDV  Y++LI G C+  +  +A +L + + +
Sbjct: 131 QLIKGLCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTA 190

Query: 343 EG---CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN 399
           +G   C P+  SYNT+I+ + K  +V++A  L+ EM+  G+ PD                
Sbjct: 191 DGGYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPD---------------- 234

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
                 +  +N L+DGLCK+  +  A  + + +   G  P+  TY +MI G C  G +E+
Sbjct: 235 ------VVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEE 288

Query: 460 AYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519
           A                 + LL KM+   ++PD +T S+L +   K   C E  ++  S 
Sbjct: 289 A-----------------VRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSM 331

Query: 520 LSRNQE 525
           + + Q+
Sbjct: 332 VRKGQK 337


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 135/467 (28%), Positives = 210/467 (44%), Gaps = 51/467 (10%)

Query: 81  MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSD 140
           ++P  FM  + +L+ A   +  Y   I L + +   G+LPD    N L+   C+   V +
Sbjct: 482 VKPNVFM--YGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEE 539

Query: 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200
           A + L  +  K   P+  T G  I      G+   A   F   ++      ++PN + Y 
Sbjct: 540 AKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLS----SGIVPNNVIYT 595

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL 260
            +I G C  G   +    F  M  +G+ PD       IR Y   ++     G T  A+ +
Sbjct: 596 ILIKGHCDVGNTVEALSTFKCMLEKGLIPD-------IRAYSAIIHSLSKNGKTKEAMGV 648

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
             +F+    + GV+  PDV  Y S+I+  CK+  ++KA +L+ +M   GI P++VVY++L
Sbjct: 649 FLKFL----KTGVV--PDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTL 702

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           I+G C +G +  AR+LF  IE +  +PD  +Y+T+I+ Y K   + EA  L+ EMIS G+
Sbjct: 703 INGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGI 762

Query: 381 RPDN--SCIL-----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
            PD    CIL           +A  LF           L+ FN L+D  CK  ++  A E
Sbjct: 763 SPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVG-SLSAFNSLIDSFCKHGKVIEARE 821

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK----------------- 470
           LF  +      PN+VTYT++I        +E+A  L  DME +                 
Sbjct: 822 LFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYN 881

Query: 471 -IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
            I    K I L   M  R +  D I   ++     K+    E + LL
Sbjct: 882 QIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLL 928



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 105/427 (24%), Positives = 192/427 (44%), Gaps = 61/427 (14%)

Query: 70   DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
            +AL  F  M+     P + ++++++ +L+        + +  +    G++PD    N L+
Sbjct: 609  EALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLI 668

Query: 130  NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
            + FCK   +  A      +L    +P++V    LI GLC  G+ T+A  LF +    D  
Sbjct: 669  SGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKD-- 726

Query: 190  PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
              ++P+V+ Y++IIDG CK G + +   LF +M  +GI PD ++Y       C  ++   
Sbjct: 727  --LVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIY-------CILIDGCG 777

Query: 250  AKGNTSAALEL-HEEFVNGNGELGVI---------------------------CHPDVLS 281
             +GN   AL L HE      G L                                P++++
Sbjct: 778  KEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVT 837

Query: 282  YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
            Y  +I++  K  ++++A++LFLDM++R IIP+ + Y+SL+  Y  +G       LF  +E
Sbjct: 838  YTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDME 897

Query: 342  SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK 401
            + G   D  +Y  + ++Y K  K  EAL L  + +  G++                    
Sbjct: 898  ARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIK-------------------- 937

Query: 402  FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
              L+  VF+ L+  LCK  ++ +  EL  ++ +     +  T   ++ G    G  ++A 
Sbjct: 938  --LEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEAS 995

Query: 462  DLLPDME 468
             +L  M+
Sbjct: 996  KVLGVMQ 1002



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 122/504 (24%), Positives = 202/504 (40%), Gaps = 83/504 (16%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + ++N+ +G L         + + + +   GL PD  +  +L++ FCK     +A + 
Sbjct: 274 PNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLI 333

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
              +     +P+  T   LI G   +G   EA  +  + +    + NV+     Y ++I 
Sbjct: 334 FESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVV----TYNAMIG 389

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           G+ K G + K   LF +M   G+ PD + YN LI  Y           + + A EL  E 
Sbjct: 390 GIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYL-------KSHDMAKACELLAEM 442

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
                       P   +Y  +I+ LC    + KA E+   M   G+ P+V +Y +LI  Y
Sbjct: 443 KARK------LTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAY 496

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL------------- 371
               R + A +L   + + G +PD   YN LI    + +KVEEA  L             
Sbjct: 497 VQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNA 556

Query: 372 --YG--------------------EMISMGVRPDN-------------SCILEAAELFRT 396
             YG                    +M+S G+ P+N                +EA   F+ 
Sbjct: 557 HTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKC 616

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           +       D+  ++ ++  L K+ + + A  +F K  + G  P+V  Y  +I G C EG 
Sbjct: 617 MLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGD 676

Query: 457 IEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSI 498
           IEKA  L  +M                    K+ E  KA EL  ++ ++ + PD +T S 
Sbjct: 677 IEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYST 736

Query: 499 LEELLNKDENCHECMNLLPSFLSR 522
           + +   K  N  E   L    +S+
Sbjct: 737 IIDGYCKSGNLTEAFKLFDEMISK 760



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 179/390 (45%), Gaps = 41/390 (10%)

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
           +L R  R+    ++      I    + G   EAS +F   ++        P +IC  +++
Sbjct: 159 SLVRCYREFGGSNLTVFDIFIDKFRVLGFLNEASSVFIASIS----EGFFPTLICCNNLM 214

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
             L K   +     ++  M    I PD + Y ++I+ +C   +    K   S   E+ +E
Sbjct: 215 RDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLS---EMEKE 271

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
                      C P++ +Y + I  LC+   VD+A E+   M  +G+ PD   Y+ L+DG
Sbjct: 272 -----------CKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDG 320

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           +C   R  +A+ +F S+ S G  P+  +Y  LI+ + K   +EEAL +  EMI+ G++ +
Sbjct: 321 FCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLN 380

Query: 384 ----NSCI---------LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
               N+ I          +A  LF  +     E D   +N L+DG  KS  +  A EL  
Sbjct: 381 VVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLA 440

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKA-IELLHKMAKRYV 489
           ++      P+  TY+V+I GLC    ++KA ++L  M   IR  +K  + +   + K YV
Sbjct: 441 EMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQM---IRNGVKPNVFMYGTLIKAYV 497

Query: 490 KPD--EITVSILEELLNK----DENCHECM 513
           +    E+ + +L+ ++      D  C+ C+
Sbjct: 498 QESRYEMAIELLKIMIANGVLPDLFCYNCL 527



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 143/355 (40%), Gaps = 53/355 (14%)

Query: 62   KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
            K G++E   A   ++ M+H    P +  +N+L+  L           L + +    L+PD
Sbjct: 673  KEGDIE--KASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPD 730

Query: 122  FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPD-----VVTLGC-------------- 162
             V+ + +++ +CK   +++AF     ++ K  SPD     ++  GC              
Sbjct: 731  VVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFH 790

Query: 163  ---------------LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207
                           LI   C  GK  EA  LF   V       + PN++ Y  +ID   
Sbjct: 791  EAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMV----DKKLTPNIVTYTILIDAYG 846

Query: 208  KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
            K   + +   LFLDM+ R I P+   Y SL+  Y       +  GN    + L ++    
Sbjct: 847  KAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSY-------NQIGNRFKMISLFKDM--- 896

Query: 268  NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
                G+ C  D ++Y  + ++ CK+    +A +L       GI  +  V+ +LI   C  
Sbjct: 897  -EARGIAC--DAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKE 953

Query: 328  GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
             +I    +L   +  E     + + NTL+  + K    +EA  + G M  +G  P
Sbjct: 954  KQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWVP 1008


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/467 (26%), Positives = 216/467 (46%), Gaps = 58/467 (12%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N+L+   AG   Y +       + ++ + PD  +   L+   C    V+DA   L  +
Sbjct: 113 AYNTLV---AGYCRYGHLDAARRLIGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDM 169

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
           LR+   P+VVT   L+  +C    F +A  +  +  A  C     PN++ Y  II+G+C+
Sbjct: 170 LRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGC----TPNIVTYNVIINGMCR 225

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           +G V+  R L   +   G  PD   Y +L++  C +  W+D +       EL  E +  N
Sbjct: 226 EGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVE-------ELFAEMMEKN 278

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                 C P+ +++  +I   C+  +V++A ++   M   G   +  + + +I+  C  G
Sbjct: 279 ------CMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQG 332

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS--- 385
           R+DDA KL   + S GC PDT SY T++    + E+ ++A  L  EM+     P+     
Sbjct: 333 RVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFN 392

Query: 386 ---CIL-------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
              CIL       +A  L   +      + +  +N LV+G C    + SA ELF+ +P  
Sbjct: 393 TFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMP-- 450

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM--------------------EEKIRECL 475
             +PN +TYT ++ GLC    ++ A +L+ +M                    ++   E  
Sbjct: 451 -CKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLE-- 507

Query: 476 KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
           +AIEL+ +M +    P+ IT + L + + KD +  + + LL   +S+
Sbjct: 508 EAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVSK 554



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 122/468 (26%), Positives = 217/468 (46%), Gaps = 53/468 (11%)

Query: 81  MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSD 140
           M   P   ++  L+  L  +    + + L + +   G  P+ V+  +L+   C+  G   
Sbjct: 137 MPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQ 196

Query: 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200
           A   L  +  K  +P++VT   +I G+C +G+  +A  L  +  ++  +P+ +     Y 
Sbjct: 197 AMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVS----YT 252

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL 260
           +++ GLC     + V  LF +M  +   P+   ++ LIR +C         G    A+++
Sbjct: 253 TLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFC-------RGGMVERAIQV 305

Query: 261 HEEFV-NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSS 319
            E+   +G      +C+        +INS+CK   VD A +L  DM S G  PD + Y++
Sbjct: 306 LEQMTEHGCATNTTLCN-------IVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTT 358

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM---- 375
           ++ G C   R DDA++L   +    C P+  ++NT I    +   +E+A+ L  +M    
Sbjct: 359 VLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHG 418

Query: 376 ISMGVRPDNSC---------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
            ++GV   N+          I  A ELFR++     + +   +  L+ GLC + RL  A 
Sbjct: 419 CTVGVVTYNALVNGFCVQGHIDSALELFRSM---PCKPNTITYTTLLTGLCNAERLDGAA 475

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK---------------- 470
           EL  ++ R    PNVVT+ V++   C +G +E+A +L+  M E                 
Sbjct: 476 ELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGI 535

Query: 471 IRECLK--AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
            ++C    A+ELLH +  + V PD IT S +  +L+K++   E + L 
Sbjct: 536 TKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLF 583



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 122/512 (23%), Positives = 209/512 (40%), Gaps = 103/512 (20%)

Query: 51  TKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLS 110
           T L++ L +  +     + DAL   + M+     P + ++  LL A+     +   + + 
Sbjct: 147 TPLIRVLCDRGR-----VADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVL 201

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           + +   G  P+ V+ N+++N  C+   V DA   L R+    F PD V+   L++GLC  
Sbjct: 202 DEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCAS 261

Query: 171 GKFTEASGLFTKFVAFDCRPNVIP-------------------------------NVICY 199
            ++ +   LF + +  +C PN +                                N    
Sbjct: 262 KRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLC 321

Query: 200 ASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK-------- 251
             +I+ +CK G V+    L  DM   G  PD   Y ++++  C A  W+DAK        
Sbjct: 322 NIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVR 381

Query: 252 --------------------GNTSAALELHEEFVNGNGELGVI----------------- 274
                               G    A+ L E+       +GV+                 
Sbjct: 382 NNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDS 441

Query: 275 ---------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
                    C P+ ++Y +++  LC    +D A EL  +M      P+VV ++ L+  +C
Sbjct: 442 ALELFRSMPCKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFC 501

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-- 383
             G +++A +L   +   GC P+  +YNTL++  +K    E+AL L   ++S GV PD  
Sbjct: 502 QKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVI 561

Query: 384 -----------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
                         I EA +LF  + +        V+N ++ GLCK   + +A + F  +
Sbjct: 562 TFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYM 621

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
              G  PN  TY ++I GL  EG +++A DLL
Sbjct: 622 VSNGCMPNESTYIILIEGLAHEGLLKEAQDLL 653



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 162/327 (49%), Gaps = 33/327 (10%)

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN 213
           +PDV     LIR LC +G+ ++A+ +  +       P    +V  Y +++ G C+ G ++
Sbjct: 73  APDVYLCTKLIRNLCRRGRTSDAARVL-RAAEGSGSP---VDVFAYNTLVAGYCRYGHLD 128

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
             R L   M    + PDA+ Y  LIRV C        +G  + AL L ++ +        
Sbjct: 129 AARRLIGSMP---VAPDAYTYTPLIRVLC-------DRGRVADALSLLDDMLRRG----- 173

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
            C P+V++Y  ++ ++C++   ++A  +  +M+++G  P++V Y+ +I+G C  GR+DDA
Sbjct: 174 -CQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDA 232

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---------- 383
           R+L   + S G  PDT SY TL+      ++ ++   L+ EM+     P+          
Sbjct: 233 RELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRF 292

Query: 384 ---NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
                 +  A ++   +       + T+ N +++ +CK  R+  A++L   +  YG  P+
Sbjct: 293 FCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPD 352

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDM 467
            ++YT ++ GLC     + A +LL +M
Sbjct: 353 TISYTTVLKGLCRAERWDDAKELLNEM 379



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 146/312 (46%), Gaps = 20/312 (6%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           +DA    N M+     P   +FN+ +  L  K      I L E+++  G     V+ N L
Sbjct: 370 DDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNAL 429

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           +N FC + G  D+ + L R +     P+ +T   L+ GLC   +   A+ L  + +  DC
Sbjct: 430 VNGFC-VQGHIDSALELFRSMP--CKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDC 486

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
            PNV+     +  ++   C+ GF+ +   L   M   G  P+   YN+L+       + E
Sbjct: 487 PPNVVT----FNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSE 542

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
           DA            E ++G    GV   PDV+++ SII  L K+  +++A +LF  ++  
Sbjct: 543 DAL-----------ELLHGLVSKGV--SPDVITFSSIIGILSKEDRIEEAVQLFHVVQDI 589

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G+ P  VVY+ ++ G C    ID+A   F  + S GC+P+ S+Y  LI   +    ++EA
Sbjct: 590 GMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEA 649

Query: 369 LSLYGEMISMGV 380
             L   + S GV
Sbjct: 650 QDLLSVLCSRGV 661



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 87/207 (42%), Gaps = 45/207 (21%)

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI------ 362
           G  PDV + + LI   C  GR  DA ++  + E  G   D  +YNTL+  Y +       
Sbjct: 71  GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAA 130

Query: 363 --------------------------EKVEEALSLYGEMISMGVRPD------------- 383
                                      +V +ALSL  +M+  G +P+             
Sbjct: 131 RRLIGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCR 190

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
           NS   +A  +   +       ++  +N +++G+C+  R+  A EL  +LP YG +P+ V+
Sbjct: 191 NSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVS 250

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEK 470
           YT ++ GLC     +   +L  +M EK
Sbjct: 251 YTTLLKGLCASKRWDDVEELFAEMMEK 277


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 127/496 (25%), Positives = 217/496 (43%), Gaps = 75/496 (15%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           + N ++ AL   +   N       +   G+ PD V+ N L+N +C+   + +AF  +  +
Sbjct: 360 TLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSM 419

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN----------------- 191
             K   P V T   +I GLC  GK+  A G+  + +     P+                 
Sbjct: 420 SGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNM 479

Query: 192 --------------VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
                         V+P+++ ++++I  L K+G +++    F DMK  G+ PD  +Y  L
Sbjct: 480 MDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTIL 539

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           I  +C         G  S AL++ +E +    E G  C  DV++Y +I+N LCK+ ++ +
Sbjct: 540 IGGFC-------RNGVMSEALKVRDEML----EQG--CXLDVVTYNTILNGLCKEKMLSE 586

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A ELF +M  RG+ PD   +++LI+GY   G ++ A  LF  +      PD  +YNTLI+
Sbjct: 587 ADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLID 646

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFEL 404
            + K  ++E+   L+ +MIS  + P++              C+ EA  L+  +    FE 
Sbjct: 647 GFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEA 706

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            +   N +V G C++     A E    +   G  P+ +TY  +I G   E  +++A+ L+
Sbjct: 707 TIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALV 766

Query: 465 PDME------------------EKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
             ME                   +     +A  ++ KM +R V PD  T + L       
Sbjct: 767 NKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQ 826

Query: 507 ENCHECMNLLPSFLSR 522
            N  E   +    L R
Sbjct: 827 NNLKEAFRVHDEMLQR 842



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 133/457 (29%), Positives = 208/457 (45%), Gaps = 48/457 (10%)

Query: 91  NSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILR 150
           NSLLG L    +      + + +   G+  +  +LNI++N  CK   + +    L  +  
Sbjct: 327 NSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEE 386

Query: 151 KVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDG 210
           K   PDVVT   LI   C QG   EA  L            + P V  Y +II+GLCK G
Sbjct: 387 KGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSG----KGLKPCVFTYNAIINGLCKTG 442

Query: 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGE 270
              + + +  +M   G+ PD   YN L+ V CC         N   A  + +E  +    
Sbjct: 443 KYLRAKGVLDEMLKIGMSPDTATYNILL-VECC------RNDNMMDAERIFDEMPSQ--- 492

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
            GV+  PD++S+ ++I  L K+  +D+A + F DMK+ G+ PD V+Y+ LI G+C  G +
Sbjct: 493 -GVV--PDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVM 549

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------- 383
            +A K+   +  +GC  D  +YNT++N   K + + EA  L+ EM   GV PD       
Sbjct: 550 SEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTL 609

Query: 384 ------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
                 +  + +A  LF  +     + D+  +N L+DG CK   +    EL+  +     
Sbjct: 610 INGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRI 669

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE------------------CLKAIE 479
            PN ++Y ++I G C  G + +A+ L  +M EK  E                   +KA E
Sbjct: 670 YPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADE 729

Query: 480 LLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
            L  M  + + PD IT + L     K+EN      L+
Sbjct: 730 FLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALV 766



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 157/348 (45%), Gaps = 46/348 (13%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DA   F+ M      P + SF++L+G L+        +     +   GL PD V   IL+
Sbjct: 481 DAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILI 540

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
             FC+   +S+A      +L +    DVVT   ++ GLC +   +EA  LFT+       
Sbjct: 541 GGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVF 600

Query: 190 P-------------------------------NVIPNVICYASIIDGLCKDGFVNKVRVL 218
           P                               N+ P+V+ Y ++IDG CK   + KV  L
Sbjct: 601 PDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNEL 660

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI-CHP 277
           + DM  R IYP+   Y  LI  YC         G  S A  L +E V    E  +I C+ 
Sbjct: 661 WNDMISRRIYPNHISYGILINGYC-------NMGCVSEAFRLWDEMVEKGFEATIITCNT 713

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
            V  YC   N++       KA E   +M  +GI+PD + Y++LI+G+     +D A  L 
Sbjct: 714 IVKGYCRAGNAV-------KADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALV 766

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
             +E+ G +PD  +YN ++N +S+  +++EA  +  +MI  GV PD S
Sbjct: 767 NKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRS 814



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 143/310 (46%), Gaps = 43/310 (13%)

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
           V W D       A E+++E V    ++      +V +   +IN+LCK+  ++  K    D
Sbjct: 336 VGWVDL------AWEIYQEVVRSGVQV------NVYTLNIMINALCKNQKIENTKSFLSD 383

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M+ +G+ PDVV Y++LI+ YC  G +++A +L  S+  +G  P   +YN +IN   K  K
Sbjct: 384 MEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGK 443

Query: 365 VEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNC 411
              A  +  EM+ +G+ PD             N  +++A  +F  + +     DL  F+ 
Sbjct: 444 YLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSA 503

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE-- 469
           L+  L K+  L  A + F+ +   G  P+ V YT++I G C  G + +A  +  +M E  
Sbjct: 504 LIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQG 563

Query: 470 ----------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECM 513
                           K +   +A EL  +M +R V PD  T + L     KD N ++ +
Sbjct: 564 CXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAV 623

Query: 514 NLLPSFLSRN 523
            L    + RN
Sbjct: 624 TLFEMMIQRN 633



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 129/320 (40%), Gaps = 52/320 (16%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  L++A   F  M      P   +F +L+            + L E +    L PD V+
Sbjct: 581 EKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVT 640

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N L++ FCK   +         ++ +   P+ ++ G LI G C  G  +EA  L+ + V
Sbjct: 641 YNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMV 700

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
                      +I   +I+ G C+ G   K      +M  +GI PD   YN+L       
Sbjct: 701 ----EKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTL------- 749

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                                                    IN   K+  +D+A  L   
Sbjct: 750 -----------------------------------------INGFIKEENMDRAFALVNK 768

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M++ G++PDV+ Y+ +++G+   GR+ +A  + + +   G  PD S+Y +LIN +     
Sbjct: 769 MENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNN 828

Query: 365 VEEALSLYGEMISMGVRPDN 384
           ++EA  ++ EM+  G  PD+
Sbjct: 829 LKEAFRVHDEMLQRGFVPDD 848



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 40/225 (17%)

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           E F  +KS+G+   +   +SL+ G   +G +D A +++  +   G   +  + N +IN+ 
Sbjct: 309 EAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINAL 368

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            K +K+E   S   +M   GV P                      D+  +N L++  C+ 
Sbjct: 369 CKNQKIENTKSFLSDMEEKGVFP----------------------DVVTYNTLINAYCRQ 406

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE---------- 469
             L  A+EL   +   G +P V TY  +I GLC  G   +A  +L +M +          
Sbjct: 407 GLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATY 466

Query: 470 --KIREC------LKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
              + EC      + A  +  +M  + V PD ++ S L  LL+K+
Sbjct: 467 NILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKN 511



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 26/158 (16%)

Query: 360 SKIEKVEEALSLYGE------MISMGVRP--DNSCILEAAELFRTLHNTKFELDLTVFNC 411
           S++E VE  +  YG       +  + VR       + E  E FR L +    + +   N 
Sbjct: 269 SRVEIVESLVLTYGNCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNS 328

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK- 470
           L+ GL K   +  AWE+++++ R G + NV T  +MI  LC    IE     L DMEEK 
Sbjct: 329 LLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKG 388

Query: 471 ---------------IRECL--KAIELLHKMAKRYVKP 491
                           R+ L  +A EL+  M+ + +KP
Sbjct: 389 VFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKP 426


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 134/476 (28%), Positives = 220/476 (46%), Gaps = 53/476 (11%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +   A  F   M+     P + ++ +++  L   +   + + L + +   G  P+  + N
Sbjct: 92  DFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYN 151

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +++   C+   + +A   L  +  + + PDVVT    I+GLC   +  EA     KF+A 
Sbjct: 152 VIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEAR----KFLA- 206

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             R  V P+V+ Y ++I+GLCK G ++    +   M  RG  PD   Y+SLI  +C    
Sbjct: 207 --RMPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGE 264

Query: 247 WEDAKGNTSAALEL--HEEFVNGNGELGVICH--------------------PDVLSYCS 284
            E A G   + L+L      V  N  LG +                      PDV+SY +
Sbjct: 265 VERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNA 324

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIP----------DVVVYSSLIDGYCLMGRIDDAR 334
            I+ LCK   V KAK +F  M  RG  P          D+++Y+ L+DG C  GR D+A 
Sbjct: 325 CIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEAC 384

Query: 335 KLFVSIESEG-CIPDTSSYNTLINSYSKIEKVEEALSLYGEM--------ISMGVRPDNS 385
            LF  +  E  C PD   YN +++S+ K  ++++AL ++ +M        ++  +     
Sbjct: 385 ALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKNCCNVVTWNILVHGL 444

Query: 386 CI----LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
           C+     +A  +  T+ +  F  D   +  LVD +CK  +  +A ELF++  + G  P+V
Sbjct: 445 CVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDV 504

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDM-EEKIRECLKAIELLHKMAKRYVKPDEITV 496
           VTY+ +I GL  E   E+AY L   + E +     K + LLH+  K   KP +  V
Sbjct: 505 VTYSALITGLVHENMAEEAYLLFTKLVERRWVPDDKTLGLLHRKLKLLNKPRKAEV 560



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 124/426 (29%), Positives = 193/426 (45%), Gaps = 44/426 (10%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           + A   F  MI     P   +F  LL  L           L  R+  +G +PD    N L
Sbjct: 24  DKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNAL 83

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           ++ + K      AF  L  +++    P VVT   ++ GLC   +  +A  L  +     C
Sbjct: 84  ISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGC 143

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
            PN+      Y  I++GLC++  +++ + +  +M  RG +PD   YNS I+  C     +
Sbjct: 144 SPNIYT----YNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVD 199

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
           +A+           +F+     + V   PDV+SY ++IN LCK   +D A  +   M +R
Sbjct: 200 EAR-----------KFL---ARMPVT--PDVVSYTTVINGLCKSGDLDSASRMLDHMSNR 243

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G  PDVV YSSLIDG+C  G ++ A  L  S+   GC P+  +YN+L+ +  ++  + +A
Sbjct: 244 GCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKA 303

Query: 369 LSLYGEMISMGVRPD----NSCI-----LEAAELFRTLHNTKFE--------------LD 405
             +  EM   G  PD    N+CI      E  +  + + +   E              +D
Sbjct: 304 EDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVD 363

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKK-LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           + ++  L+DGLCK  R   A  LF K L     EP+V  Y VM+   C    I+KA  + 
Sbjct: 364 ILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIH 423

Query: 465 PDMEEK 470
             M EK
Sbjct: 424 KQMLEK 429



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 158/333 (47%), Gaps = 23/333 (6%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           KSG+  L+ A    ++M +   TP + +++SL+            + L + +  +G  P+
Sbjct: 226 KSGD--LDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPN 283

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+ N L+    ++  +  A   L  + R+ F+PDVV+    I GLC   +  +A  +F 
Sbjct: 284 MVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFD 343

Query: 182 KFVAFDCRPN------VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI-YPDAFVY 234
           + V   C PN      +I +++ Y  ++DGLCK G  ++   LF  +    I  PD F Y
Sbjct: 344 RMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFY 403

Query: 235 NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294
           N ++  +C        +     AL++H++ +  N      C  +V+++  +++ LC D  
Sbjct: 404 NVMLDSHC-------KRRQIDKALQIHKQMLEKN-----CC--NVVTWNILVHGLCVDDR 449

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           +  A+ + L M   G IPD V Y +L+D  C  G+   A +LF      GC+PD  +Y+ 
Sbjct: 450 LSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSA 509

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
           LI         EEA  L+ +++     PD+  +
Sbjct: 510 LITGLVHENMAEEAYLLFTKLVERRWVPDDKTL 542



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 154/357 (43%), Gaps = 41/357 (11%)

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           NV  Y  ++  L ++   +K   +F +M  +   PDAF +  L+R  C            
Sbjct: 6   NVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLC-----------R 54

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
           S  LE   + +    E+G  C PD   Y ++I+   K     +A +   +M     +P V
Sbjct: 55  SNQLEKARKLLGRMKEMG--CVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTV 112

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           V Y++++DG C   R  DA KL   +  +GC P+  +YN ++    +  K++EA  +  E
Sbjct: 113 VTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEE 172

Query: 375 MISMGVRPD----NSCILEAAELFRTLHNTKF------ELDLTVFNCLVDGLCKSWRLRS 424
           M   G  PD    NS I    +  R     KF        D+  +  +++GLCKS  L S
Sbjct: 173 MAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGLCKSGDLDS 232

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE--------------- 469
           A  +   +   G  P+VVTY+ +I G C  G +E+A  LL  M +               
Sbjct: 233 ASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLG 292

Query: 470 ---KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
              ++    KA ++L +M +R   PD ++ +   + L K E   +   +    + R 
Sbjct: 293 ALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERG 349



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 61/133 (45%), Gaps = 18/133 (13%)

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
           +E ++  +N L+  L +  R   A  +F+++     +P+  T+ +++ GLC    +EKA 
Sbjct: 3   YEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKAR 62

Query: 462 DLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELL 503
            LL  M+E                  K ++  +A + L +M K +  P  +T + + + L
Sbjct: 63  KLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGL 122

Query: 504 NKDENCHECMNLL 516
            K E   + + LL
Sbjct: 123 CKAERTRDAVKLL 135


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 127/496 (25%), Positives = 217/496 (43%), Gaps = 75/496 (15%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           + N ++ AL   +   N       +   G+ PD V+ N L+N +C+   + +AF  +  +
Sbjct: 256 TLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSM 315

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN----------------- 191
             K   P V T   +I GLC  GK+  A G+  + +     P+                 
Sbjct: 316 SGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNM 375

Query: 192 --------------VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
                         V+P+++ ++++I  L K+G +++    F DMK  G+ PD  +Y  L
Sbjct: 376 MDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTIL 435

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           I  +C         G  S AL++ +E +    E G  C  DV++Y +I+N LCK+ ++ +
Sbjct: 436 IGGFC-------RNGVMSEALKVRDEML----EQG--CVLDVVTYNTILNGLCKEKMLSE 482

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A ELF +M  RG+ PD   +++LI+GY   G ++ A  LF  +      PD  +YNTLI+
Sbjct: 483 ADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLID 542

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFEL 404
            + K  ++E+   L+ +MIS  + P++              C+ EA  L+  +    FE 
Sbjct: 543 GFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEA 602

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            +   N +V G C++     A E    +   G  P+ +TY  +I G   E  +++A+ L+
Sbjct: 603 TIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALV 662

Query: 465 PDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
             ME                   +     +A  ++ KM +R V PD  T + L       
Sbjct: 663 NKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQ 722

Query: 507 ENCHECMNLLPSFLSR 522
            N  E   +    L R
Sbjct: 723 NNLKEAFRVHDEMLQR 738



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 135/458 (29%), Positives = 212/458 (46%), Gaps = 50/458 (10%)

Query: 91  NSLLGALAGKKYYVNFIC-LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149
           NSLLG L  K  +V+    + + +   G+  +  +LNI++N  CK   + +    L  + 
Sbjct: 223 NSLLGGLV-KVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDME 281

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD 209
            K   PDVVT   LI   C QG   EA  L         +P V      Y +II+GLCK 
Sbjct: 282 EKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFT----YNAIINGLCKT 337

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
           G   + + +  +M   G+ PD   YN L+ V CC         N   A  + +E  +   
Sbjct: 338 GKYLRAKGVLDEMLKIGMSPDTATYNILL-VECCR------NDNMMDAERIFDEMPSQ-- 388

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
             GV+  PD++S+ ++I  L K+  +D+A + F DMK+ G+ PD V+Y+ LI G+C  G 
Sbjct: 389 --GVV--PDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGV 444

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------ 383
           + +A K+   +  +GC+ D  +YNT++N   K + + EA  L+ EM   GV PD      
Sbjct: 445 MSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTT 504

Query: 384 -------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
                  +  + +A  LF  +     + D+  +N L+DG CK   +    EL+  +    
Sbjct: 505 LINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRR 564

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE------------------CLKAI 478
             PN ++Y ++I G C  G + +A+ L  +M EK  E                   +KA 
Sbjct: 565 IYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKAD 624

Query: 479 ELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           E L  M  + + PD IT + L     K+EN      L+
Sbjct: 625 EFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALV 662



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 157/348 (45%), Gaps = 46/348 (13%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DA   F+ M      P + SF++L+G L+        +     +   GL PD V   IL+
Sbjct: 377 DAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILI 436

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
             FC+   +S+A      +L +    DVVT   ++ GLC +   +EA  LFT+       
Sbjct: 437 GGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVF 496

Query: 190 P-------------------------------NVIPNVICYASIIDGLCKDGFVNKVRVL 218
           P                               N+ P+V+ Y ++IDG CK   + KV  L
Sbjct: 497 PDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNEL 556

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI-CHP 277
           + DM  R IYP+   Y  LI  YC         G  S A  L +E V    E  +I C+ 
Sbjct: 557 WNDMISRRIYPNHISYGILINGYC-------NMGCVSEAFRLWDEMVEKGFEATIITCNT 609

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
            V  YC   N++       KA E   +M  +GI+PD + Y++LI+G+     +D A  L 
Sbjct: 610 IVKGYCRAGNAV-------KADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALV 662

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
             +E+ G +PD  +YN ++N +S+  +++EA  +  +MI  GV PD S
Sbjct: 663 NKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRS 710



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 158/336 (47%), Gaps = 43/336 (12%)

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL 260
           S++ GL K G+V+    ++ ++   G+  + +  N +I   C     E+ K         
Sbjct: 224 SLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTK--------- 274

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
              F++   E GV   PDV++Y ++IN+ C+  L+++A EL   M  +G+ P V  Y+++
Sbjct: 275 --SFLSDMEEKGVF--PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAI 330

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           I+G C  G+   A+ +   +   G  PDT++YN L+    + + + +A  ++ EM S GV
Sbjct: 331 INGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGV 390

Query: 381 RPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
            PD             N C+ +A + FR + N     D  ++  L+ G C++  +  A +
Sbjct: 391 VPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALK 450

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKR 487
           +  ++   G   +VVTY  ++ GLC E  + +A +L  +M E                 R
Sbjct: 451 VRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTE-----------------R 493

Query: 488 YVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
            V PD  T + L    +KD N ++ + L    + RN
Sbjct: 494 GVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRN 529



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 130/320 (40%), Gaps = 52/320 (16%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  L++A   F  M      P   +F +L+   +        + L E +    L PD V+
Sbjct: 477 EKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVT 536

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N L++ FCK   +         ++ +   P+ ++ G LI G C  G  +EA  L+ + V
Sbjct: 537 YNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMV 596

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
                      +I   +I+ G C+ G   K      +M  +GI PD   YN+LI      
Sbjct: 597 ----EKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLI------ 646

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                                                     N   K+  +D+A  L   
Sbjct: 647 ------------------------------------------NGFIKEENMDRAFALVNK 664

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M++ G++PDV+ Y+ +++G+   GR+ +A  + + +   G  PD S+Y +LIN +     
Sbjct: 665 MENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNN 724

Query: 365 VEEALSLYGEMISMGVRPDN 384
           ++EA  ++ EM+  G  PD+
Sbjct: 725 LKEAFRVHDEMLQRGFVPDD 744



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 18/121 (14%)

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
           E  E FR L +    + +   N L+ GL K   +  AWE+++++ R G + NV T  +MI
Sbjct: 202 EGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMI 261

Query: 449 CGLCIEGGIEKAYDLLPDMEEK----------------IRECL--KAIELLHKMAKRYVK 490
             LC    IE     L DMEEK                 R+ L  +A EL+  M+ + +K
Sbjct: 262 NALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLK 321

Query: 491 P 491
           P
Sbjct: 322 P 322


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 126/442 (28%), Positives = 210/442 (47%), Gaps = 57/442 (12%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A+     M+     P   ++NS+L      +     I   +++ + G+ PD V+ N 
Sbjct: 247 MDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNS 306

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           LM+  CK    ++A      + ++   PD+ T   L++G   +G   E   L    V   
Sbjct: 307 LMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNG 366

Query: 188 CRP-----NVI--------------------------PNVICYASIIDGLCKDGFVNKVR 216
             P     N++                          PNV+ Y ++I  LCK G V+   
Sbjct: 367 IHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAM 426

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
           + F  M   G+ P+  VY SLI   C    W+ A+       EL  E ++       IC 
Sbjct: 427 LYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAE-------ELILEMLDRG-----IC- 473

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
            + + + SII+S CK+  V ++++LF  M   G+ P+V+ YS+LIDGYCL G++D+A KL
Sbjct: 474 LNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKL 533

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCILE---- 389
             S+ S G  PD  +YNTLIN Y ++ ++++AL+L+ EM+S GV P+    + IL+    
Sbjct: 534 LSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFH 593

Query: 390 ------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                 A EL+  +  +  +L+L+ +N ++ GLCK+     A  +F+ L     +    T
Sbjct: 594 TRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRT 653

Query: 444 YTVMICGLCIEGGIEKAYDLLP 465
           + +MI  L   G  ++A DL  
Sbjct: 654 FNIMIGALLKVGRNDEAKDLFA 675



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 111/443 (25%), Positives = 193/443 (43%), Gaps = 61/443 (13%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142
           P   +  +N +  A AGK                 + P   +  IL+ C C+   +   F
Sbjct: 65  PAAAVSRYNRMARAGAGK-----------------VTPTVHTYGILIGCCCRAGRLDLGF 107

Query: 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL-FTKFVAFDCRPNVIPNVICYAS 201
            ALG +++K F  + +T   L++GLC   + ++A  +   +     C P+V    I    
Sbjct: 108 AALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTI---- 163

Query: 202 IIDGLCKDGFVNKVRVLF---LDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL 258
           ++ GLC +    +   L     D +G G  PD   Y ++I       N    +G++  A 
Sbjct: 164 LLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVI-------NGFFKEGDSDKAY 216

Query: 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS 318
             + E ++          PDV++Y SII +LCK   +DKA E+   M   G++P+ + Y+
Sbjct: 217 STYHEMLDRR------ISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYN 270

Query: 319 SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
           S++ GYC   +  +A      + S+G  PD  +YN+L++   K  +  EA  ++  M   
Sbjct: 271 SILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKR 330

Query: 379 GVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
           G+ PD                ++E   L   +       D  VFN L+    K  ++  A
Sbjct: 331 GLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEA 390

Query: 426 WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKA-----IEL 480
             +F K+ ++G  PNVVTY  +I  LC  G ++   D +   E+ I E L         L
Sbjct: 391 MLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVD---DAMLYFEQMIDEGLTPNIIVYTSL 447

Query: 481 LHKMA--KRYVKPDEITVSILEE 501
           +H +    ++ K +E+ + +L+ 
Sbjct: 448 IHSLCIFDKWDKAEELILEMLDR 470



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 116/466 (24%), Positives = 193/466 (41%), Gaps = 70/466 (15%)

Query: 53  LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSER 112
           L+ YL +N +S E     A   F+ M      P + ++ +LL   A K   V    L + 
Sbjct: 307 LMDYLCKNGRSTE-----ARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDL 361

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +   G+ PD    NIL+  + K   V +A +   ++ +   +P+VVT G +I  LC  G 
Sbjct: 362 MVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGS 421

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
             +A   F + +       + PN+I Y S+I  LC     +K   L L+M  RGI  +  
Sbjct: 422 VDDAMLYFEQMI----DEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTI 477

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            +NS+I  +C        +G    + +L +  V     +GV   P+V++Y ++I+  C  
Sbjct: 478 FFNSIIHSHC-------KEGRVIESEKLFDLMV----RIGV--KPNVITYSTLIDGYCLA 524

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             +D+A +L   M S G+ PD V Y++LI+GYC + R+DDA  LF  + S G  P+  +Y
Sbjct: 525 GKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITY 584

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------------------NSCI 387
           N ++       +   A  LY  +   G + +                         N C+
Sbjct: 585 NIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCL 644

Query: 388 L-----------------------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
                                   EA +LF  L       D+  ++ + + L +   L  
Sbjct: 645 TDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEE 704

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
             +LF  +   G   N      ++  L   G I +A   L  ++EK
Sbjct: 705 LDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLSMIDEK 750



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 82/217 (37%), Gaps = 47/217 (21%)

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
           + P V  Y  LI   C  GR+D       ++  +G   +  ++  L+      ++  +A+
Sbjct: 83  VTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAM 142

Query: 370 SLY-GEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNC--LVDGLCKSWRLRSAW 426
            +    M  +   PD                        VF+C  L+ GLC   R + A 
Sbjct: 143 DIVLRRMTELSCMPD------------------------VFSCTILLKGLCDENRSQEAL 178

Query: 427 ELFKKLPR---YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHK 483
           EL   +      G  P+VV+YT +I G   EG  +KAY                    H+
Sbjct: 179 ELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAY-----------------STYHE 221

Query: 484 MAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
           M  R + PD +T S +   L K +   + M +L + +
Sbjct: 222 MLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMV 258


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 127/491 (25%), Positives = 235/491 (47%), Gaps = 72/491 (14%)

Query: 61  SKSGEVELNDALCFFN-YMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI--- 116
           ++SG + L+DAL  F+  ++H +P   + + N LL  ++  K   +      R N +   
Sbjct: 17  ARSGNLGLHDALKLFDELLLHARPAS-VRALNQLLSVVSRAKCSSSSKLAVSRFNRMLRD 75

Query: 117 ---GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF 173
               + PD  + +I++ CFC++  +   F A G IL+  +  D + +  L++GLC   + 
Sbjct: 76  CSNKVAPDCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRV 135

Query: 174 TEASG-LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLF---LDMKGRGIYP 229
            EA   L  +     CR  V+     Y +++ GLC      + R L    +D +     P
Sbjct: 136 GEAMHVLLRQMPEVGCRLGVVS----YNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSP 191

Query: 230 DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSL 289
           D   YN +I  +     + + + + + +L L         E+GV   PDV++Y +II+ L
Sbjct: 192 DVVSYNIVINGF-----FNEGQVDKAYSLFL---------EMGV--SPDVVTYNTIIDGL 235

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
           CK   VD+A+++F  M  +G+ P+ V Y+++IDG C    +D A  +F  +  +G  P  
Sbjct: 236 CKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSN 295

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVF 409
            +YNT+I+   K + V+ A  ++ +MI  GV+PD+                        +
Sbjct: 296 VTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDH----------------------VTY 333

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           N ++DGLCK+  +  A  +F+++   G +P+ +TYT++I GLC    +++A  +   M +
Sbjct: 334 NTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMID 393

Query: 470 K-------IRECL-----------KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHE 511
           K          CL           + ++ + +M+   ++PD  T  +L + L K+  C+E
Sbjct: 394 KGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNE 453

Query: 512 CMNLLPSFLSR 522
             +L  S + +
Sbjct: 454 ARSLFDSMIRK 464



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 136/530 (25%), Positives = 222/530 (41%), Gaps = 110/530 (20%)

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           F  MI     P   ++N L+        +   +   + ++   L PD  +  +L++  CK
Sbjct: 388 FQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCK 447

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN--- 191
               ++A      ++RK   P V   G ++ G   +G  +E   L    VA    PN   
Sbjct: 448 NGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRI 507

Query: 192 ----------------------------VIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
                                       + PNV+ Y ++ID LCK G V+   + F  M 
Sbjct: 508 FNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMI 567

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
             G+ P+  V+NSL+   C    WE  +       EL  E +N          PD++ + 
Sbjct: 568 NEGVTPNNVVFNSLVYGLCTVDKWEKVE-------ELFLEMLNQG------IRPDIVFFN 614

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
           +++ +LCK+  V +A+ L   M   G+ PDV+ Y++LIDG+C   R+D+A KL   + S 
Sbjct: 615 TVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSA 674

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP--------------------- 382
           G  P+  SYNTL++ Y K  +++ A  L+ EM+  GV P                     
Sbjct: 675 GLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEA 734

Query: 383 ---------------------------DNSCILEAAELFRTLHNTKFELDLTVFNCLVDG 415
                                       N+C  EA ++F++L +   +LD+  FN ++DG
Sbjct: 735 RELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDG 794

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK----- 470
           L K  R   A +LF  +P  G  P+VVTY ++   L  EG +E+   L   ME+      
Sbjct: 795 LFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAPN 854

Query: 471 -------IRECL------KAIELLHKMAKRYVKPDEITVSILEELLNKDE 507
                  IR+ L      +A   L K+ ++    +  T S+L  L +++E
Sbjct: 855 SHMLNALIRKLLDRGEIPRAGAYLSKLDEKNFSLEASTTSMLISLFSREE 904



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 188/414 (45%), Gaps = 30/414 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E++ A   F  M+     P   ++N+++  L   +       + +++   G+ P  V+ N
Sbjct: 240 EVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYN 299

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            +++  CK   V  A     +++ +   PD VT   +I GLC      +A G+F + +  
Sbjct: 300 TIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMI-- 357

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                V P+ + Y  IIDGLCK   V++   +F  M  +G+ P+   YN LI  Y     
Sbjct: 358 --DKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQ 415

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
           WE+        +  H+              PDV +Y  +++ LCK+   ++A+ LF  M 
Sbjct: 416 WEEVVQRIKE-MSAHD------------LEPDVFTYGLLLDYLCKNGKCNEARSLFDSMI 462

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            +GI P V +Y  ++ GY   G + +   L   + + G  P+   +NT+I +Y+K   ++
Sbjct: 463 RKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMID 522

Query: 367 EALSLYGEMISMGVRP---------DNSCIL----EAAELFRTLHNTKFELDLTVFNCLV 413
           E + ++ +M   G+ P         D  C L    +A   F  + N     +  VFN LV
Sbjct: 523 EVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLV 582

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            GLC   +     ELF ++   G  P++V +  ++C LC EG + +A  L+  M
Sbjct: 583 YGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSM 636


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 139/548 (25%), Positives = 240/548 (43%), Gaps = 86/548 (15%)

Query: 2   PSSSPATSRTAFKVKP----SSSLRNSKKPISLNSENEPSSLHSNSVSTVEEKTKLLKYL 57
           P+S+   S     ++P    ++ +RN +K + +++E   + + S     V     L+K L
Sbjct: 22  PTSNSLHSTIVSCIRPELNDANKVRNPQK-VRVSAETRQTHVLSFDFKEVH----LMKLL 76

Query: 58  SENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIG 117
           + + ++G+   N++L F   M+    TP +     L+      +       + E L   G
Sbjct: 77  NRSCRAGKY--NESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEILERYG 134

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
             PD  + N L++ F K   + +A   L R+  + F PDVVT   +I   C +GK   A 
Sbjct: 135 K-PDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLAL 193

Query: 178 GLFTKFVAFDCRPNVI-------------------------------PNVICYASIIDGL 206
            +F + +  +C P VI                               P+ + Y +II G+
Sbjct: 194 EIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGM 253

Query: 207 CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266
           CK+  V+K   L   +  RG  PD   YN L+R       W + +       +L  E ++
Sbjct: 254 CKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGE-------KLISEMIS 306

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
                 + C P+V+++  +I +LC+D  V++A  L   MK +G+ PD   Y  LI G+C 
Sbjct: 307 ------IGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCR 360

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC 386
            GR+D A +    + S+GC+PD  +YNT++    +  K ++AL ++ ++  +G  P+ S 
Sbjct: 361 EGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSS 420

Query: 387 I-------------LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
                           A E+   L N   + D   +N L+  LC+   +  A EL   + 
Sbjct: 421 YNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQ 480

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDE 493
                PNVV+Y +++ GLC                 K+     AIE+L  M ++  +P+E
Sbjct: 481 SGRYRPNVVSYNIILLGLC-----------------KVNRANDAIEVLAAMTEKGCQPNE 523

Query: 494 ITVSILEE 501
            T  +L E
Sbjct: 524 TTYILLIE 531



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/428 (26%), Positives = 193/428 (45%), Gaps = 55/428 (12%)

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ---GKFTEASGL 179
           V L  L+N  C+    +++   L  ++ K ++PDV+    LI+G       GK T    +
Sbjct: 70  VHLMKLLNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEI 129

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             ++          P+V  Y ++I G  K   +     +   MK RG  PD   YN +I 
Sbjct: 130 LERYGK--------PDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIG 181

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            +C       ++G    ALE+ EE +  N      C P V++Y  +I +   D  +D A 
Sbjct: 182 SFC-------SRGKLDLALEIFEELLKDN------CEPTVITYTILIEATILDGGIDVAM 228

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           +L  +M S+G+ PD + Y+++I G C    +D A +L  S+ S GC PD  +YN L+ + 
Sbjct: 229 KLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTL 288

Query: 360 SKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDL 406
               K  E   L  EMIS+G +P+             +  + EA  L R++     + D 
Sbjct: 289 LSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDA 348

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             ++ L+ G C+  RL  A E  + +   G  P++V Y  ++ GLC  G  ++A ++   
Sbjct: 349 YCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEK 408

Query: 467 MEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDEN 508
           ++E                     +  +A+E++ K+  + + PDEIT + L   L +D  
Sbjct: 409 LDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGM 468

Query: 509 CHECMNLL 516
             E + LL
Sbjct: 469 VDEAIELL 476



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/393 (24%), Positives = 169/393 (43%), Gaps = 74/393 (18%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           A+   + M+     P   ++N+++  +  +        L   L++ G  PD ++ NIL+ 
Sbjct: 227 AMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILL- 285

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
                                             R L  +GK++E   L ++ ++  C+P
Sbjct: 286 ----------------------------------RTLLSRGKWSEGEKLISEMISIGCKP 311

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
           NV+ + I    +I  LC+DG V +   L   MK +G+ PDA+ Y+ LI  +C        
Sbjct: 312 NVVTHSI----LIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFC-------R 360

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
           +G    A E  E  ++        C PD+++Y +I+  LC+    D+A E+F  +   G 
Sbjct: 361 EGRLDLATEFLEYMISDG------CLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGC 414

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
            P+V  Y++L       G    A ++ + + ++G  PD  +YN+LI+   +   V+EA+ 
Sbjct: 415 PPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIE 474

Query: 371 LYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
           L  +M S   RP                      ++  +N ++ GLCK  R   A E+  
Sbjct: 475 LLVDMQSGRYRP----------------------NVVSYNIILLGLCKVNRANDAIEVLA 512

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            +   G +PN  TY ++I G+   G   +A +L
Sbjct: 513 AMTEKGCQPNETTYILLIEGIGFSGLRAEAMEL 545



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 146/293 (49%), Gaps = 21/293 (7%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + ++N LL  L  +  +     L   + +IG  P+ V+ +IL+   C+   V +A   
Sbjct: 276 PDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNL 335

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           L  +  K   PD      LI G C +G+      L T+F+ +      +P+++ Y +I+ 
Sbjct: 336 LRSMKEKGLKPDAYCYDPLIAGFCREGRLD----LATEFLEYMISDGCLPDIVNYNTIMA 391

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           GLC+ G  ++   +F  +   G  P+   YN+L         W  + G+   ALE+  + 
Sbjct: 392 GLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSAL-----W--SSGDRYRALEMILKL 444

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           +N          PD ++Y S+I+ LC+D +VD+A EL +DM+S    P+VV Y+ ++ G 
Sbjct: 445 LNQG------IDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGL 498

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS----KIEKVEEALSLYG 373
           C + R +DA ++  ++  +GC P+ ++Y  LI        + E +E A SL+G
Sbjct: 499 CKVNRANDAIEVLAAMTEKGCQPNETTYILLIEGIGFSGLRAEAMELANSLHG 551



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 123/298 (41%), Gaps = 25/298 (8%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           MI +   P + + + L+G L         + L   +   GL PD    + L+  FC+   
Sbjct: 304 MISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGR 363

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           +  A   L  ++     PD+V    ++ GLC  GK  +A  +F K     C PNV     
Sbjct: 364 LDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSS--- 420

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            Y ++   L   G   +   + L +  +GI PD   YNSLI   C         G    A
Sbjct: 421 -YNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLC-------RDGMVDEA 472

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
           +EL  +  +G         P+V+SY  I+  LCK    + A E+   M  +G  P+   Y
Sbjct: 473 IELLVDMQSGR------YRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTY 526

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
             LI+G    G   +A +L  S+     I +        +S++++ K    L +Y ++
Sbjct: 527 ILLIEGIGFSGLRAEAMELANSLHGMNAISE--------DSFNRLNKTFPLLDVYKDL 576


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 111/391 (28%), Positives = 189/391 (48%), Gaps = 66/391 (16%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++NS++            I +  ++ + G+ PD V+ N LM+  CK    ++A      +
Sbjct: 79  TYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSM 138

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGL----------------------FTKFVAF 186
           +++   PD+ T G L+ G   +G   E   L                      +TK    
Sbjct: 139 VKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAYTKQEKV 198

Query: 187 D---------CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
           D          +  + PN + Y ++IDGLCK G ++   + F  M  +G+ P+  VY SL
Sbjct: 199 DEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSL 258

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           I   C    WE A+       E+ ++ +N          P+++ + +I++SLCK+  V +
Sbjct: 259 IHALCTYDKWEKAE---ELIFEILDQGIN----------PNIVFFNTILDSLCKEGRVIE 305

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           +K+LF  +   G+ PDV+ YS+LIDGYCL G++D A KL   + S G  PD+ +Y+TLIN
Sbjct: 306 SKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLIN 365

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
            Y KI ++E+AL+L+ EM S GV P                      D+  +N ++ GL 
Sbjct: 366 GYCKINRMEDALALFKEMESNGVNP----------------------DIITYNIILHGLF 403

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
           ++ R  +A EL+ ++   G +  + TY +++
Sbjct: 404 RTRRTAAAKELYARITESGTQLELSTYNIIL 434



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 118/440 (26%), Positives = 195/440 (44%), Gaps = 75/440 (17%)

Query: 85  PFMPSFNSLLGAL-----AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVS 139
           P + S+N+++  L       K Y      L  R++     PD V+ N ++    K   + 
Sbjct: 9   PDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVS-----PDAVTYNSIIAALSKAQAMD 63

Query: 140 DAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICY 199
            A      +L  +  P+  T   ++ G C  G+  +A G+F K     C   + P+V+ Y
Sbjct: 64  RAM----EVLTVMVMPNCFTYNSIMHGYCSSGQSEKAIGIFRKM----CSDGIEPDVVTY 115

Query: 200 ASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE 259
            S++D LCK+G   + R +F  M  RG+ PD   Y +L+  Y        +KG   A +E
Sbjct: 116 NSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYA-------SKG---ALVE 165

Query: 260 LHE--EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
           +H+    +  NG        D   +  +I +  K   VD+   +F  M+ +G+ P+ V Y
Sbjct: 166 MHDLLALMVQNG-----MQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNY 220

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
            ++IDG C +GR+DDA   F  +  +G  P+   Y +LI++    +K E+A  L  E++ 
Sbjct: 221 RTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILD 280

Query: 378 MGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
            G+ P+                      +  FN ++D LCK  R+  + +LF  L   G 
Sbjct: 281 QGINPN----------------------IVFFNTILDSLCKEGRVIESKKLFDLLGHIGV 318

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIE 479
            P+V+TY+ +I G C+ G ++ A  LL  M                    KI     A+ 
Sbjct: 319 NPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALA 378

Query: 480 LLHKMAKRYVKPDEITVSIL 499
           L  +M    V PD IT +I+
Sbjct: 379 LFKEMESNGVNPDIITYNII 398



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 149/302 (49%), Gaps = 22/302 (7%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           SK   VE++D L     M+          FN L+ A   ++     + +  ++   GL P
Sbjct: 159 SKGALVEMHDLLAL---MVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTP 215

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           + V+   +++  CK+  + DA +   +++ K  +P+VV    LI  LC   K+ +A  L 
Sbjct: 216 NAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELI 275

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR-GIYPDAFVYNSLIR 239
             F   D   N  PN++ + +I+D LCK+G V + + LF D+ G  G+ PD   Y++LI 
Sbjct: 276 --FEILDQGIN--PNIVFFNTILDSLCKEGRVIESKKLF-DLLGHIGVNPDVITYSTLID 330

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            YC A       G    A++L        G + V   PD ++Y ++IN  CK   ++ A 
Sbjct: 331 GYCLA-------GKMDGAMKLL------TGMVSVGLKPDSVTYSTLINGYCKINRMEDAL 377

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            LF +M+S G+ PD++ Y+ ++ G     R   A++L+  I   G   + S+YN ++  +
Sbjct: 378 ALFKEMESNGVNPDIITYNIILHGLFRTRRTAAAKELYARITESGTQLELSTYNIILMDF 437

Query: 360 SK 361
           +K
Sbjct: 438 AK 439



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 125/281 (44%), Gaps = 54/281 (19%)

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI------------- 321
           C PDV+SY +II+ L K+  VDKA   + +M  R + PD V Y+S+I             
Sbjct: 7   CPPDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAM 66

Query: 322 ------------------DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
                              GYC  G+ + A  +F  + S+G  PD  +YN+L++   K  
Sbjct: 67  EVLTVMVMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNG 126

Query: 364 KVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFN 410
           K  EA  ++  M+  G++PD                ++E  +L   +     +LD  VFN
Sbjct: 127 KCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFN 186

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            L+    K  ++     +F K+ + G  PN V Y  +I GLC  G ++   D + + E+ 
Sbjct: 187 ILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLD---DAMLNFEQM 243

Query: 471 IRECLKA-----IELLHKMAK--RYVKPDEITVSILEELLN 504
           I + L         L+H +    ++ K +E+   IL++ +N
Sbjct: 244 IDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGIN 284



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 68/178 (38%), Gaps = 43/178 (24%)

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL 404
           C PD  SYNT+I+   K   V++A   Y EM+   V PD                     
Sbjct: 7   CPPDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPD--------------------- 45

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
               +N ++  L K+  +  A E+   +      PN  TY  ++ G C  G  EKA    
Sbjct: 46  -AVTYNSIIAALSKAQAMDRAMEVLTVMVM----PNCFTYNSIMHGYCSSGQSEKA---- 96

Query: 465 PDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
                        I +  KM    ++PD +T + L + L K+  C E   +  S + R
Sbjct: 97  -------------IGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSMVKR 141


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 122/466 (26%), Positives = 212/466 (45%), Gaps = 58/466 (12%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N+L+   AG   Y         + ++ + PD  +   ++   C    V +A   L  +
Sbjct: 115 AYNTLV---AGYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDM 171

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
           L +   P VVT   L+  +C    F +A  +  +  A  C     PN++ Y  II+G+C+
Sbjct: 172 LHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGC----TPNIVTYNVIINGMCR 227

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           +G V+  R     +   G  PD   Y ++++  C A  WED +       EL  E +  N
Sbjct: 228 EGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVE-------ELFAEMMEKN 280

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                 C P+ +++  ++   C+  +V++A ++   M   G   +  + + +I+  C  G
Sbjct: 281 ------CMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQG 334

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS--- 385
           R+DDA +   ++ S GC PDT SY T++    + E+ E+A  L  EM+     P+     
Sbjct: 335 RVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFN 394

Query: 386 ---CIL-------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
              CIL       +A  L   +     E+++  +N LV+G C   R+ SA ELF  +P  
Sbjct: 395 TFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP-- 452

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL-------------------- 475
             +PN +TYT ++ GLC    ++ A +LL +M +K  +C                     
Sbjct: 453 -CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQK--DCAPNVVTFNVLVSFFCQKGLMD 509

Query: 476 KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
           +AIEL+ +M +    P+ IT + L + +  D N  E + LL   +S
Sbjct: 510 EAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVS 555



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 122/497 (24%), Positives = 219/497 (44%), Gaps = 91/497 (18%)

Query: 51  TKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLS 110
           T +++ L +  + GE     AL   + M+H    P + ++  LL A+     +   + + 
Sbjct: 149 TPIIRGLCDRGRVGE-----ALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVL 203

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           + +   G  P+ V+ N+++N  C+   V DA   L R+    F PD V+   +++GLC  
Sbjct: 204 DEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAA 263

Query: 171 GKFTEASGLFTK---------------FVAFDCRPNVIPNVI----------CYAS---- 201
            ++ +   LF +                V F CR  ++   I          C A+    
Sbjct: 264 KRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLC 323

Query: 202 --IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE 259
             +I+ +CK G V+       +M   G  PD   Y ++++  C A  WEDAK       E
Sbjct: 324 NIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAK-------E 376

Query: 260 LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSS 319
           L +E V  N      C P+ +++ + I  LC+  L+++A  L   M   G   ++V Y++
Sbjct: 377 LLKEMVRKN------CPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNA 430

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           L++G+C+ GR+D A +LF S+    C P+T +Y TL+      E+++ A  L  EM+   
Sbjct: 431 LVNGFCVQGRVDSALELFYSMP---CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKD 487

Query: 380 VRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
             P                      ++  FN LV   C+   +  A EL +++  +G  P
Sbjct: 488 CAP----------------------NVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTP 525

Query: 440 NVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           N++TY  ++ G+  +   E                 +A+ELLH +    V PD +T S +
Sbjct: 526 NLITYNTLLDGITNDCNSE-----------------EALELLHGLVSNGVSPDIVTYSSI 568

Query: 500 EELLNKDENCHECMNLL 516
             +L++++   E + + 
Sbjct: 569 IGVLSREDRVEEAIKMF 585



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/430 (25%), Positives = 191/430 (44%), Gaps = 38/430 (8%)

Query: 51  TKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLS 110
           T +LK L    +  +VE       F  M+     P   +F+ L+            I + 
Sbjct: 254 TTVLKGLCAAKRWEDVEE-----LFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVL 308

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           E+++  G   +    NI++N  CK   V DAF  L  +     SPD ++   +++GLC  
Sbjct: 309 EQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRA 368

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
            ++ +A  L  + V    R N  PN + + + I  LC+ G + +  +L   M   G   +
Sbjct: 369 ERWEDAKELLKEMV----RKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVN 424

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
              YN+L+  +C        +G   +ALEL            + C P+ ++Y +++  LC
Sbjct: 425 IVTYNALVNGFC-------VQGRVDSALELF---------YSMPCKPNTITYTTLLTGLC 468

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
               +D A EL  +M  +   P+VV ++ L+  +C  G +D+A +L   +   GC P+  
Sbjct: 469 NAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLI 528

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTL 397
           +YNTL++  +     EEAL L   ++S GV PD                + EA ++F  +
Sbjct: 529 TYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIV 588

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
            +        ++N ++  LCK      A + F  +   G  PN +TY  +I GL  E  +
Sbjct: 589 QDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFL 648

Query: 458 EKAYDLLPDM 467
           ++  DLL ++
Sbjct: 649 KETRDLLREL 658



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 164/346 (47%), Gaps = 33/346 (9%)

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           +++A   + R   +  +PDV     LIR LC +G+ ++A+ +         R     +V 
Sbjct: 59  LAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAE----RSGTAVDVF 114

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            Y +++ G C+ G ++  R L   M    + PDA+ Y  +IR  C        +G    A
Sbjct: 115 AYNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLC-------DRGRVGEA 164

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
           L L ++ ++        C P V++Y  ++ ++CK     +A E+  +M+++G  P++V Y
Sbjct: 165 LSLLDDMLHRG------CQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTY 218

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           + +I+G C  GR+DDAR+    + S G  PDT SY T++      ++ E+   L+ EM+ 
Sbjct: 219 NVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMME 278

Query: 378 MGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
               P+                +  A ++   +       + T+ N +++ +CK  R+  
Sbjct: 279 KNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDD 338

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           A++    +  YG  P+ ++YT ++ GLC     E A +LL +M  K
Sbjct: 339 AFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRK 384



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 140/315 (44%), Gaps = 20/315 (6%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DA      M+     P   +FN+ +  L  K        L E+++  G   + V+ N L+
Sbjct: 373 DAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALV 432

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           N FC    V  A      +  K   P+ +T   L+ GLC   +   A+ L  + +  DC 
Sbjct: 433 NGFCVQGRVDSALELFYSMPCK---PNTITYTTLLTGLCNAERLDAAAELLAEMLQKDC- 488

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
               PNV+ +  ++   C+ G +++   L   M   G  P+   YN+L+       N E+
Sbjct: 489 ---APNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEE 545

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
           A       LEL    V+ NG       PD+++Y SII  L ++  V++A ++F  ++  G
Sbjct: 546 A-------LELLHGLVS-NG-----VSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLG 592

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
           + P  V+Y+ ++   C     D A   F  + S GC+P+  +Y TLI   +  + ++E  
Sbjct: 593 MRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETR 652

Query: 370 SLYGEMISMGVRPDN 384
            L  E+ S GV   N
Sbjct: 653 DLLRELCSRGVLNKN 667



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 106/243 (43%), Gaps = 37/243 (15%)

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           + +D L + A+ L     SRG  PDV + + LI   C  GR  DA ++  + E  G   D
Sbjct: 54  IARDDLAEAAR-LVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVD 112

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP-------------DNSCILEAAELFR 395
             +YNTL+  Y +  +++ A  L   + SM V P             D   + EA  L  
Sbjct: 113 VFAYNTLVAGYCRYGQLDAARRL---IASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLD 169

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            + +   +  +  +  L++ +CKS     A E+  ++   G  PN+VTY V+I G+C EG
Sbjct: 170 DMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREG 229

Query: 456 GIEKA---------YDLLPDMEEKIRECLKAI----------ELLHKMAKRYVKPDEITV 496
            ++ A         Y   PD        LK +          EL  +M ++   P+E+T 
Sbjct: 230 RVDDAREFLNRLSSYGFQPDTVSYT-TVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTF 288

Query: 497 SIL 499
            +L
Sbjct: 289 DML 291



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 69/160 (43%), Gaps = 4/160 (2%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +++A+     M+    TP + ++N+LL  +         + L   L + G+ PD V+ + 
Sbjct: 508 MDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSS 567

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++    +   V +A      +      P  V    ++  LC +     A   F   V+  
Sbjct: 568 IIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNG 627

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI 227
           C    +PN + Y ++I+GL  + F+ + R L  ++  RG+
Sbjct: 628 C----MPNELTYITLIEGLANEDFLKETRDLLRELCSRGV 663


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 119/389 (30%), Positives = 182/389 (46%), Gaps = 55/389 (14%)

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA---- 176
           + ++ N L+  FCK   +  AF  L  +  +  SPDVVT   +++ LC  G  + A    
Sbjct: 104 NHITYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYF 163

Query: 177 ---------SGLFTKFVAFDCRPN----------------VIPNVICYASIIDGLCKDGF 211
                    S LF   V   C+ N                ++P+V+ Y S+IDGLCK   
Sbjct: 164 RESVECAPDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYR 223

Query: 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGEL 271
           + + R L   M  R + P+   YN+LI  YC         G T  A +L E  +      
Sbjct: 224 MEEARQLLETMVKRKVRPNLVTYNTLIYGYC-------KTGCTGLAHQLIERMIQSG--- 273

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
               HPDV+++ S+I+  C+   +DKA E+   MK     P++V Y+ LI G C  GR +
Sbjct: 274 ---THPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRAN 330

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--NSCILE 389
           +A +L   ++  G +PD  +YN+LI  + +  ++E+A  +   M+  GV PD  + C L 
Sbjct: 331 EACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLA 390

Query: 390 AAELFRTLHNTKFEL-----------DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
            A L     +  F L           +L  FN L++GLC S RL  A  L   + R G +
Sbjct: 391 VALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCD 450

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           P   TY V++ GLC  G ++ A ++L  M
Sbjct: 451 PAASTYEVLVTGLCKAGRVDDAKEVLVMM 479



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 170/381 (44%), Gaps = 60/381 (15%)

Query: 159 TLGCLIRGLCMQGKFTEASGLFT-KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRV 217
           T  CL+R L    +  +A  +F  + +   C  N I     Y ++I G CK G + +   
Sbjct: 71  TCNCLLRTLVKARRHHQAYQIFRDELLGQHCDTNHIT----YNTLIGGFCKAGDMERAFQ 126

Query: 218 LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277
           L  +MK RG  PD   ++S+++  C         GN S A++   E V         C P
Sbjct: 127 LLAEMKERGHSPDVVTHSSIVQALC-------NTGNLSRAMQYFRESVE--------CAP 171

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           D + +  +++ LCK   + +A+++  +M  RGI+PDVV Y+SLIDG C   R+++AR+L 
Sbjct: 172 DSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLL 231

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397
            ++      P+  +YNTLI  Y K      A  L   MI  G  P               
Sbjct: 232 ETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHP--------------- 276

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                  D+  FN L+ G C+  ++  A E+   + +    PN+VTY V+I GLC  G  
Sbjct: 277 -------DVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRA 329

Query: 458 EKAYDLLPDMEEKI------------------RECLKAIELLHKMAKRYVKPDEITVSIL 499
            +A +LL +M+ +                    +  +A ++ + M +R V PD I+   L
Sbjct: 330 NEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTL 389

Query: 500 EELLNKDENCHECMNLLPSFL 520
              L K E   E   LL +  
Sbjct: 390 AVALLKSERFDEAFALLDNMF 410



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 149/316 (47%), Gaps = 17/316 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L++A      M      P + ++NSL+  L           L E +    + P+ V+ N
Sbjct: 188 QLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYN 247

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+  +CK      A   + R+++    PDVVT   LI G C + K  +A  +       
Sbjct: 248 TLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKG 307

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C PN++     Y  +I GLC  G  N+   L  +M GRGI PD   YNSLI ++C    
Sbjct: 308 LCAPNLVT----YNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQ 363

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            E A        ++    V    E GVI  PD +SYC++  +L K    D+A  L  +M 
Sbjct: 364 IEQA-------FQIQNLMV----ERGVI--PDGISYCTLAVALLKSERFDEAFALLDNMF 410

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
             G IP++  ++SL++G C   R+D+AR L   +   GC P  S+Y  L+    K  +V+
Sbjct: 411 DAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVD 470

Query: 367 EALSLYGEMISMGVRP 382
           +A  +   M+S G++P
Sbjct: 471 DAKEVLVMMVSEGIQP 486


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 115/410 (28%), Positives = 203/410 (49%), Gaps = 44/410 (10%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERL--NTIG--LLPDFVSLNILMNCFC 133
           MI  +  P + ++NSL+         V+ +  +ERL  + +G    P  ++   L+  F 
Sbjct: 258 MIEKKCGPDVVTYNSLMDGFCK----VSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFS 313

Query: 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
           +   ++DA+  +  + +   SPD+VT  CL+ GLC  GK  EA  L    V  DC P+V+
Sbjct: 314 RADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVV 373

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
                Y+ +++GLCK G V+  R+L   M  RG  P+   +N++I  +C A   ++    
Sbjct: 374 T----YSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGH-- 427

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
               LEL +E         V C PDV++Y ++I+  CK    ++ ++ F  +   GI PD
Sbjct: 428 --KVLELMKE---------VSCTPDVVTYSTLIDGYCK---ANRMQDAFAIL---GISPD 470

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
              YSS+++G C  G++++A+++   +  +GC P +S Y  +I     +E+ +EAL +  
Sbjct: 471 KASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQ 530

Query: 374 EMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
            M   G  P+                + +A  +   +       D+  +  L+DG CK  
Sbjct: 531 VMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKIN 590

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           ++ +A++ FK +   G EP+ + Y ++I G C  G +EKA +++  M EK
Sbjct: 591 KMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEK 640



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 104/351 (29%), Positives = 170/351 (48%), Gaps = 39/351 (11%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P   +  IL++  C+   + +A+  L  +++K   PD     CLI GLC  GK   A  +
Sbjct: 90  PTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNV 149

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
               +   C    +P+VI Y S+I G C+   +++ R L   MK  G+ PD   YN+L+ 
Sbjct: 150 LKMMLERSC----VPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLN 205

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C     E+         +L EE V    E      PD  SY +++  LC+    ++A 
Sbjct: 206 GLCKQNQLEEVS-------KLLEEMVEAGRE------PDTFSYNTVVACLCESGKYEEAG 252

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           ++   M  +   PDVV Y+SL+DG+C + ++D+A +L   +    C P   +Y TLI  +
Sbjct: 253 KILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGF 312

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
           S+ +++ +A  +  +M   G+ P                      DL  +NCL+DGLCK+
Sbjct: 313 SRADRLADAYRVMEDMFKAGISP----------------------DLVTYNCLLDGLCKA 350

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            +L  A EL + +      P+VVTY++++ GLC  G ++ A  LL  M E+
Sbjct: 351 GKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLER 401



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 123/417 (29%), Positives = 194/417 (46%), Gaps = 38/417 (9%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L++A      M     TP   ++N+LL  L  +        L E +   G  PD  S N 
Sbjct: 178 LDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNT 237

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++ C C+     +A   L +++ K   PDVVT   L+ G C   K  EA  L    V   
Sbjct: 238 VVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRR 297

Query: 188 CRPNVIPNVICYASIIDGLCK-DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           C P VI     Y ++I G  + D   +  RV+  DM   GI PD   YN L+   C A  
Sbjct: 298 CAPTVIT----YTTLIGGFSRADRLADAYRVME-DMFKAGISPDLVTYNCLLDGLCKAGK 352

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            E+A        EL E  V  +      C PDV++Y  ++N LCK   VD A+ L   M 
Sbjct: 353 LEEAH-------ELLEVMVEKD------CAPDVVTYSILVNGLCKLGKVDDARLLLEMML 399

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            RG  P++V ++++IDG+C  G++D+  K+   ++   C PD  +Y+TLI+ Y K  +++
Sbjct: 400 ERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQ 459

Query: 367 EALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDLTVFNCLV 413
           +A ++      +G+ PD +              + EA E+   +         + +  ++
Sbjct: 460 DAFAI------LGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALII 513

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            GLC   R   A ++ + +   G EPN+ TY+++I GLC    +E A ++L  M EK
Sbjct: 514 GGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEK 570



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 128/523 (24%), Positives = 226/523 (43%), Gaps = 91/523 (17%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L+ AL  F   +   PT F  ++  L+  L   +       L + +      PD    N
Sbjct: 74  DLDRALSHFRGKMWCSPTAF--TYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYN 131

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+   CKM  +  A   L  +L +   PDV+T   LI G C      EA  L  K    
Sbjct: 132 CLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMK-- 189

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                + P+ + Y ++++GLCK   + +V  L  +M   G  PD F YN+++   C +  
Sbjct: 190 --ESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGK 247

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
           +E+A        ++ E+ +         C PDV++Y S+++  CK   +D+A+ L  DM 
Sbjct: 248 YEEAG-------KILEKMIEKK------CGPDVVTYNSLMDGFCKVSKMDEAERLLEDMV 294

Query: 307 SR-----------------------------------GIIPDVVVYSSLIDGYCLMGRID 331
            R                                   GI PD+V Y+ L+DG C  G+++
Sbjct: 295 GRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLE 354

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP--------- 382
           +A +L   +  + C PD  +Y+ L+N   K+ KV++A  L   M+  G +P         
Sbjct: 355 EAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMI 414

Query: 383 DNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
           D  C    + E  ++   +       D+  ++ L+DG CK+ R++ A+ +       G  
Sbjct: 415 DGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAIL------GIS 468

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK------------------IRECLKAIEL 480
           P+  +Y+ M+ GLC  G +E+A +++  M ++                  +    +A+++
Sbjct: 469 PDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKM 528

Query: 481 LHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
           L  M++R  +P+  T SIL   L K +   + +N+L   L + 
Sbjct: 529 LQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKG 571



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 111/423 (26%), Positives = 183/423 (43%), Gaps = 76/423 (17%)

Query: 35  EPSSLHSNSV-------STVEEKTKLLKYLSENSKSGEV----ELNDALC---------- 73
           EP +   N+V          EE  K+L+ + E     +V     L D  C          
Sbjct: 229 EPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAER 288

Query: 74  FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
               M+  +  P + ++ +L+G  +      +   + E +   G+ PD V+ N L++  C
Sbjct: 289 LLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLC 348

Query: 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
           K   + +A   L  ++ K  +PDVVT   L+ GLC  GK  +A  L    +   C+PN++
Sbjct: 349 KAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLV 408

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA--- 250
                + ++IDG CK G V++   +   MK     PD   Y++LI  YC A   +DA   
Sbjct: 409 T----FNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAI 464

Query: 251 ------KGNTSAALE---------------------------LHEEFV--------NGNG 269
                 K + S+ LE                            H   +         G+ 
Sbjct: 465 LGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDE 524

Query: 270 ELGVI-------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
            L ++       C P++ +Y  +IN LCK   V+ A  +   M  +G +PDV  Y+SLID
Sbjct: 525 ALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLID 584

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
           G+C + ++D A + F ++   GC PD  +YN LI+ + +   VE+A+ +   M+  G  P
Sbjct: 585 GFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNP 644

Query: 383 DNS 385
           D +
Sbjct: 645 DAA 647



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 128/294 (43%), Gaps = 23/294 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +++DA      M+     P + +FN+++              + E +  +   PD V+ +
Sbjct: 387 KVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYS 446

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ +CK   + DAF  LG       SPD  +   ++ GLC  GK  EA  +       
Sbjct: 447 TLIDGYCKANRMQDAFAILG------ISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQ 500

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C P        YA II GLC     ++   +   M  RG  P+ + Y+ LI   C    
Sbjct: 501 GCPPTSSH----YALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKR 556

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            EDA       LE               C PDV +Y S+I+  CK   +D A + F  M+
Sbjct: 557 VEDAINVLDVMLEKG-------------CVPDVATYTSLIDGFCKINKMDAAYQCFKTMR 603

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
             G  PD + Y+ LI G+C  G ++ A ++   +  +GC PD ++Y +L+ S +
Sbjct: 604 DSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLMRSLT 657


>gi|357460285|ref|XP_003600424.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489472|gb|AES70675.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 393

 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 116/364 (31%), Positives = 175/364 (48%), Gaps = 53/364 (14%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR-------------- 165
           PD V  N +++  CK   VSD       ++ K   PDVVT   LI               
Sbjct: 37  PDVVMYNTIIDILCKDKLVSDGCDLYSEMIDKKIYPDVVTYNTLIYSLLNFVYIKIRKEY 96

Query: 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225
           G  + G+  EA GL  +  +      V PN+  + +++DGLCKDG V K R +   M  +
Sbjct: 97  GFSILGQMKEAVGLLNQMTS----KTVTPNIRTFTTLVDGLCKDGEVKKARNVLAIMIKQ 152

Query: 226 GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSI 285
            + P+   YNSL+  Y        AK           +  N     G+   P+V SY  +
Sbjct: 153 RVEPNIVTYNSLMDGYFLVKEVNKAK-----------QLFNTISLRGMT--PNVRSYKVM 199

Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
           IN LCK+ +VD+A  LF +M S+ ++PD V Y+SLIDG C   RI D       +   G 
Sbjct: 200 INGLCKNKMVDEAANLFKEMHSKNMVPDTVAYNSLIDGLCKSRRIYDVWDFIGEMHDRGQ 259

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELD 405
             +  +YN+L++   K  +V++A++L  ++ + G+RP                      +
Sbjct: 260 PANIITYNSLLDGLCKNHQVDKAITLLTKIKNQGIRP----------------------N 297

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
           +  +  LVDGLCK+ RLR A E+++ L   G + +   YTVMI GLC EG +++A  LL 
Sbjct: 298 IYTYTILVDGLCKNGRLRDAQEVYQDLLNKGYQLDARIYTVMINGLCKEGFLDEALSLLS 357

Query: 466 DMEE 469
            ME+
Sbjct: 358 KMED 361



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 103/369 (27%), Positives = 172/369 (46%), Gaps = 46/369 (12%)

Query: 164 IRGLCMQGKFTEASGLFTKFVAFDCRPNVI------PNVICYASIIDGLCKDGFVNKVRV 217
           ++GLC+ G+  +A       +A     N I      P+V+ Y +IID LCKD  V+    
Sbjct: 1   MKGLCLNGEVRKALYFHDHVIAKGFHLNHIERLLVKPDVVMYNTIIDILCKDKLVSDGCD 60

Query: 218 LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG-NGELGVICH 276
           L+ +M  + IYPD   YN+LI      V  +  K    + L   +E V   N        
Sbjct: 61  LYSEMIDKKIYPDVVTYNTLIYSLLNFVYIKIRKEYGFSILGQMKEAVGLLNQMTSKTVT 120

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P++ ++ ++++ LCKD  V KA+ +   M  + + P++V Y+SL+DGY L+  ++ A++L
Sbjct: 121 PNIRTFTTLVDGLCKDGEVKKARNVLAIMIKQRVEPNIVTYNSLMDGYFLVKEVNKAKQL 180

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
           F +I   G  P+  SY  +IN   K                      N  + EAA LF+ 
Sbjct: 181 FNTISLRGMTPNVRSYKVMINGLCK----------------------NKMVDEAANLFKE 218

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           +H+     D   +N L+DGLCKS R+   W+   ++   G   N++TY  ++ GLC    
Sbjct: 219 MHSKNMVPDTVAYNSLIDGLCKSRRIYDVWDFIGEMHDRGQPANIITYNSLLDGLC---- 274

Query: 457 IEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                        K  +  KAI LL K+  + ++P+  T +IL + L K+    +   + 
Sbjct: 275 -------------KNHQVDKAITLLTKIKNQGIRPNIYTYTILVDGLCKNGRLRDAQEVY 321

Query: 517 PSFLSRNQE 525
              L++  +
Sbjct: 322 QDLLNKGYQ 330



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 135/297 (45%), Gaps = 27/297 (9%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGAL-----AGKKYYVNFICLSERLNTIGLLPD 121
           ++ +A+   N M     TP + +F +L+  L       K   V  I + +R+      P+
Sbjct: 103 QMKEAVGLLNQMTSKTVTPNIRTFTTLVDGLCKDGEVKKARNVLAIMIKQRVE-----PN 157

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+ N LM+ +  +  V+ A      I  +  +P+V +   +I GLC      EA+ LF 
Sbjct: 158 IVTYNSLMDGYFLVKEVNKAKQLFNTISLRGMTPNVRSYKVMINGLCKNKMVDEAANLFK 217

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           +  +     N++P+ + Y S+IDGLCK   +  V     +M  RG   +   YNSL+   
Sbjct: 218 EMHS----KNMVPDTVAYNSLIDGLCKSRRIYDVWDFIGEMHDRGQPANIITYNSLLDGL 273

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C              A+ L  +  N          P++ +Y  +++ LCK+  +  A+E+
Sbjct: 274 C-------KNHQVDKAITLLTKIKNQG------IRPNIYTYTILVDGLCKNGRLRDAQEV 320

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
           + D+ ++G   D  +Y+ +I+G C  G +D+A  L   +E   C PD  +Y   I +
Sbjct: 321 YQDLLNKGYQLDARIYTVMINGLCKEGFLDEALSLLSKMEDNKCTPDGVTYEITIRA 377


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 117/376 (31%), Positives = 184/376 (48%), Gaps = 49/376 (13%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
           P+VVT   +I G C   +  EA G    F+       + PN+I +  II+GLC+DG + +
Sbjct: 16  PNVVTYNTMIDGYCKLKRTDEAFG----FLRSMGLKGLEPNLITFNMIINGLCRDGRLKE 71

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
              + ++M  +G  PD   YN+L+  YC        +GN   AL LH E V  NG     
Sbjct: 72  TSEVLVEMSRKGYVPDEVTYNTLVNGYC-------KEGNFHQALVLHAEMVR-NG----- 118

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
             P+V++Y S+INS+CK   +++A E F  M  RG+ P+   Y+++I+G+   G +D+A 
Sbjct: 119 LSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAY 178

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCILEA- 390
           ++   +   G IP   +YN LIN +  + ++EEA+ L  +M+  GV PD    S I+   
Sbjct: 179 RVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGF 238

Query: 391 ---AELFRTLHNTKFEL-------DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
               EL R     K E+       D   ++ L+ GLC+  RL  A ++F+++      P+
Sbjct: 239 ARNQELDRAFQ-MKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPD 297

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILE 500
             TYT +I   C EG +                  KA+ L  +M ++   PD +T ++L 
Sbjct: 298 EFTYTTLINAYCKEGDLN-----------------KALHLHDEMIQKGFLPDAVTYNVLI 340

Query: 501 ELLNKDENCHECMNLL 516
             LNK     E   LL
Sbjct: 341 NGLNKQARSKEARRLL 356



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 124/453 (27%), Positives = 197/453 (43%), Gaps = 66/453 (14%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
            L FF  M      P + ++N+++      K           +   GL P+ ++ N+++N
Sbjct: 2   GLRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIIN 61

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
             C+   + +    L  + RK + PD VT   L+ G C +G F +A  L  + V    R 
Sbjct: 62  GLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMV----RN 117

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR----------- 239
            + PNV+ Y S+I+ +CK G +N+    F  M  RG+ P+   Y ++I            
Sbjct: 118 GLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEA 177

Query: 240 -----------------VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
                             Y   +N     G    A+ L ++ V G G L     PDV+SY
Sbjct: 178 YRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMV-GKGVL-----PDVVSY 231

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
            +II+   ++  +D+A ++ ++M  + ++PD V YSSLI G C   R+ +A  +F  + +
Sbjct: 232 STIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLT 291

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCI---------LE 389
               PD  +Y TLIN+Y K   + +AL L+ EMI  G  PD    N  I          E
Sbjct: 292 IKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKE 351

Query: 390 AAELFRTL-----------HNTKFE----LDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
           A  L   L           +NT  E    ++      LV G C    +  A ++F+ +  
Sbjct: 352 ARRLLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLMDEADQVFESMIN 411

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
              +PN   Y V+I G C  G + KAY L  +M
Sbjct: 412 KNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEM 444



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 101/396 (25%), Positives = 193/396 (48%), Gaps = 24/396 (6%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N    E   + AL     M+    +P + ++ SL+ ++         +   ++++  GL 
Sbjct: 96  NGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLC 155

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+  +   ++N F +   + +A+  L  + R  F P +VT   LI G C+ G+  EA GL
Sbjct: 156 PNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGL 215

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
               V       V+P+V+ Y++II G  ++  +++   + ++M G+ + PDA  Y+SLI+
Sbjct: 216 LQDMVG----KGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQ 271

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C        +   + A ++ +E       L +   PD  +Y ++IN+ CK+  ++KA 
Sbjct: 272 GLC-------EQRRLTEACDMFQEM------LTIKLPPDEFTYTTLINAYCKEGDLNKAL 318

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            L  +M  +G +PD V Y+ LI+G     R  +AR+L + +  +  IP   +YNTLI + 
Sbjct: 319 HLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENC 378

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
             IE  + A++L       G+        EA ++F ++ N   + +  ++N ++ G C+ 
Sbjct: 379 CNIE-FKSAVALVKGFCMKGLMD------EADQVFESMINKNHKPNEAIYNVIIHGHCRI 431

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
             +  A++L+K++      P+ VT   ++  L  EG
Sbjct: 432 GNVLKAYKLYKEMVHVDFVPHTVTVLALVKALFTEG 467



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 133/278 (47%), Gaps = 31/278 (11%)

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
           C P+V++Y ++I+  CK    D+A      M  +G+ P+++ ++ +I+G C  GR+ +  
Sbjct: 14  CLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKETS 73

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------NSC 386
           ++ V +  +G +PD  +YNTL+N Y K     +AL L+ EM+  G+ P+        NS 
Sbjct: 74  EVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSM 133

Query: 387 -----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
                +  A E F  +H      +   +  +++G  +   L  A+ +  ++ R G  P++
Sbjct: 134 CKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSI 193

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDMEEK------------------IRECLKAIELLHK 483
           VTY  +I G C+ G +E+A  LL DM  K                   +E  +A ++  +
Sbjct: 194 VTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVE 253

Query: 484 MAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
           M  + V PD +T S L + L +     E  ++    L+
Sbjct: 254 MIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLT 291


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 122/416 (29%), Positives = 199/416 (47%), Gaps = 35/416 (8%)

Query: 53  LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSER 112
           L+ YL +N +S E     A   F+ M+     P    + +LL   A + Y V    L + 
Sbjct: 282 LMVYLCKNGRSME-----ARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDV 336

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +   G  PD    NIL+  + K   V +A +A  ++ ++   P++VT G ++  LC  GK
Sbjct: 337 MVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGK 396

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
             +A   F + ++      + PN + + ++I GLC     +K   L ++M GRGI P+  
Sbjct: 397 VDDAMSQFDRLIS----EGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTI 452

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            +N+L+   C        +G  + A  + +  V     + V C  DV++Y ++I+  C D
Sbjct: 453 FFNTLLNHLC-------KEGMVTRAKNIFDLMV----RVDVQC--DVITYTTLIDGYCLD 499

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             VD+A +L   M   G+ P+ V Y+++I+GYC  GRI+DA  LF  + S+G  P    Y
Sbjct: 500 GKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIY 559

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRP-------------DNSCILEAAELFRTLHN 399
           +T+++   +  ++  A  LY  MI  G++               N+C  +A  +F  L  
Sbjct: 560 STILHGLFQTRRIAAAKELYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNLCL 619

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
             F L    FN ++D L K  R   A +LF  L   G  PNVVTY +M+  L  +G
Sbjct: 620 IDFHLQNRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQG 675



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 116/462 (25%), Positives = 207/462 (44%), Gaps = 51/462 (11%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYY-VNFICLSERLNTIGLLPDFVSLNILM 129
           AL  FN M    P   + +++ ++G  +   +  + F  L   + T G     ++ + L+
Sbjct: 84  ALSLFNRM----PRADLCTYSIVIGCCSRAGHLDLAFAALGRVIRT-GWTAQAITFSPLL 138

Query: 130 NCFCKMIGVSDAF-VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
              C     SDA  +AL R+     +P+  +   L++GLC + +  +A  L    +A D 
Sbjct: 139 KGLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDT 198

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
           R    P+V+ Y ++I+GL ++G ++K   LF +M  +G+ P+   YN L+  YC      
Sbjct: 199 RGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYC------ 252

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
            + G    A+ +  +      E      PDV++Y +++  LCK+    +A+++F  M  +
Sbjct: 253 -SSGKPKEAIGIFRKMCRDGVE------PDVVTYNTLMVYLCKNGRSMEARKVFDSMVKK 305

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G  PD  +Y +L+ GY   G +    +L   +   G  PD   +N LI +Y+K   V+EA
Sbjct: 306 GHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEA 365

Query: 369 LSLYGEMISMGVRP---------DNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDG 415
           +  + +M   G+ P         D  C    + +A   F  L +     +  VF  L+ G
Sbjct: 366 MLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHG 425

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC- 474
           LC   +   A EL  ++   G  PN + +  ++  LC EG + +A ++   M     +C 
Sbjct: 426 LCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCD 485

Query: 475 -----------------LKAIELLHKMAKRYVKPDEITVSIL 499
                             +A +LL  M    VKP+E+T + +
Sbjct: 486 VITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTI 527



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 145/331 (43%), Gaps = 40/331 (12%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +++DA+  F+ +I    TP    F +L+  L     +     L+  +   G+ P+ +  N
Sbjct: 396 KVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFN 455

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+N  CK   V+ A      ++R     DV+T   LI G C+ GK  EA+ L    V  
Sbjct: 456 TLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVL- 514

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                V PN + Y +II+G CK+G +     LF  M  +G+ P   +Y++++        
Sbjct: 515 ---DGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLF---- 567

Query: 247 WEDAKGNTSAALELHEEFVNGN-----GELGVI--------CHPDVL------------- 280
                   +AA EL+   +        G   +I        C  D L             
Sbjct: 568 ---QTRRIAAAKELYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHL 624

Query: 281 ---SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
              ++  +I++L K    D+AK+LF  + +RG++P+VV Y  ++      G +++   LF
Sbjct: 625 QNRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLF 684

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           +S+E  GC  D+   N L+    +  +V +A
Sbjct: 685 LSLEKNGCTADSRMLNALVGKLPQKGEVRKA 715


>gi|18071423|gb|AAL58282.1|AC068923_24 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 952

 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 116/374 (31%), Positives = 193/374 (51%), Gaps = 46/374 (12%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD  +  IL+ C C+   +   F ALG +++K F  + +T   L++GLC   + ++A  +
Sbjct: 85  PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDI 144

Query: 180 -FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLF---LDMKGRGIYPDAFVYN 235
              +     C    IPNV  Y ++++GLC +    +   L     D +G G  PD   Y 
Sbjct: 145 VLRRMTELGC----IPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYT 200

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           ++I  +         +G++  A   + E +    + G++  PDV++Y SII +LCK   +
Sbjct: 201 TVINGFF-------KEGDSDKAYSTYHEML----DRGIL--PDVVTYSSIIAALCKGQAM 247

Query: 296 DK------------AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
           DK            +++LF  M   G+ PD++ YS+LIDGYCL G++D+A KL   + S 
Sbjct: 248 DKPWSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSV 307

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCILE----------A 390
           G  P+T +Y+TLIN Y KI ++E+AL L+ EM S GV PD    + IL+          A
Sbjct: 308 GLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAA 367

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
            EL+  +  +  +++L+ +N ++ GLCK+     A ++F+ L     +    T+ +MI  
Sbjct: 368 KELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDA 427

Query: 451 LCIEGGIEKAYDLL 464
           L   G  ++A DL 
Sbjct: 428 LLKVGRNDEAKDLF 441



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 136/289 (47%), Gaps = 35/289 (12%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVAL--GRILR--KVFS--------PDVVTLGCLI 164
           G+LPD V+ + ++   CK   +   +     GR++   K+F         PD++T   LI
Sbjct: 226 GILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLI 285

Query: 165 RGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224
            G C+ GK  EA  L +  V+   +PN +     Y+++I+G CK   +    VLF +M+ 
Sbjct: 286 DGYCLAGKMDEAMKLLSGMVSVGLKPNTV----TYSTLINGYCKISRMEDALVLFKEMES 341

Query: 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCS 284
            G+ PD   YN +++              T+AA EL+        ++      ++ +Y  
Sbjct: 342 SGVSPDIITYNIILQGLF-------QTRRTAAAKELYVRITESGTQI------ELSTYNI 388

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           I++ LCK+ L D A ++F ++    +  +   ++ +ID    +GR D+A+ LFV+  S G
Sbjct: 389 ILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNG 448

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAEL 393
            +P+  +Y  +  +      +EE   L+  M       DN C +++  L
Sbjct: 449 LVPNYWTYRLMAENIIGQGLLEELDQLFLSM------EDNGCTVDSGML 491



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 141/311 (45%), Gaps = 42/311 (13%)

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
           V P++  Y  +I   C+ G ++       ++  +G   +A  +  L++  C       A 
Sbjct: 83  VTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLC-------AD 135

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF---LDMKSR 308
             TS A+++    +    ELG  C P+V SY +++N LC +    +A EL     D +  
Sbjct: 136 KRTSDAMDI---VLRRMTELG--CIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGG 190

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G  PDVV Y+++I+G+   G  D A   +  +   G +PD  +Y+++I +  K + +++ 
Sbjct: 191 GSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKP 250

Query: 369 LSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
            S   E            ++E+ +LF  +     + D+  ++ L+DG C + ++  A +L
Sbjct: 251 WSHCKE----------GRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKL 300

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRY 488
              +   G +PN VTY+ +I G C                 KI     A+ L  +M    
Sbjct: 301 LSGMVSVGLKPNTVTYSTLINGYC-----------------KISRMEDALVLFKEMESSG 343

Query: 489 VKPDEITVSIL 499
           V PD IT +I+
Sbjct: 344 VSPDIITYNII 354



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 120/285 (42%), Gaps = 56/285 (19%)

Query: 74  FFNYMIHMQPTPFMPSFNSLLGA--LAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131
            F+ M+ +   P + ++++L+    LAGK      + L   + ++GL P+ V+ + L+N 
Sbjct: 265 LFDLMVRIGVKPDIITYSTLIDGYCLAGK--MDEAMKLLSGMVSVGLKPNTVTYSTLING 322

Query: 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
           +CK+  + DA V    +     SPD++T   +++GL    +   A  L+ +      +  
Sbjct: 323 YCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQ-- 380

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
               +  Y  I+ GLCK+   +    +F ++                    C ++     
Sbjct: 381 --IELSTYNIILHGLCKNKLTDDALQMFQNL--------------------CLMD----- 413

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
                 L+L     N                  +I++L K    D+AK+LF+   S G++
Sbjct: 414 ------LKLEARTFN-----------------IMIDALLKVGRNDEAKDLFVAFSSNGLV 450

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           P+   Y  + +     G +++  +LF+S+E  GC  D+   N ++
Sbjct: 451 PNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIV 495


>gi|222613081|gb|EEE51213.1| hypothetical protein OsJ_32035 [Oryza sativa Japonica Group]
          Length = 861

 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 116/374 (31%), Positives = 193/374 (51%), Gaps = 46/374 (12%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD  +  IL+ C C+   +   F ALG +++K F  + +T   L++GLC   + ++A  +
Sbjct: 85  PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDI 144

Query: 180 -FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLF---LDMKGRGIYPDAFVYN 235
              +     C    IPNV  Y ++++GLC +    +   L     D +G G  PD   Y 
Sbjct: 145 VLRRMTELGC----IPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYT 200

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           ++I  +         +G++  A   + E +    + G++  PDV++Y SII +LCK   +
Sbjct: 201 TVINGFF-------KEGDSDKAYSTYHEML----DRGIL--PDVVTYSSIIAALCKGQAM 247

Query: 296 DK------------AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
           DK            +++LF  M   G+ PD++ YS+LIDGYCL G++D+A KL   + S 
Sbjct: 248 DKPWSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSV 307

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCILE----------A 390
           G  P+T +Y+TLIN Y KI ++E+AL L+ EM S GV PD    + IL+          A
Sbjct: 308 GLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAA 367

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
            EL+  +  +  +++L+ +N ++ GLCK+     A ++F+ L     +    T+ +MI  
Sbjct: 368 KELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDA 427

Query: 451 LCIEGGIEKAYDLL 464
           L   G  ++A DL 
Sbjct: 428 LLKVGRNDEAKDLF 441



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 136/289 (47%), Gaps = 35/289 (12%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVAL--GRILR--KVFS--------PDVVTLGCLI 164
           G+LPD V+ + ++   CK   +   +     GR++   K+F         PD++T   LI
Sbjct: 226 GILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLI 285

Query: 165 RGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224
            G C+ GK  EA  L +  V+   +PN +     Y+++I+G CK   +    VLF +M+ 
Sbjct: 286 DGYCLAGKMDEAMKLLSGMVSVGLKPNTV----TYSTLINGYCKISRMEDALVLFKEMES 341

Query: 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCS 284
            G+ PD   YN +++              T+AA EL+        ++      ++ +Y  
Sbjct: 342 SGVSPDIITYNIILQGLF-------QTRRTAAAKELYVRITESGTQI------ELSTYNI 388

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           I++ LCK+ L D A ++F ++    +  +   ++ +ID    +GR D+A+ LFV+  S G
Sbjct: 389 ILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNG 448

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAEL 393
            +P+  +Y  +  +      +EE   L+  M       DN C +++  L
Sbjct: 449 LVPNYWTYRLMAENIIGQGLLEELDQLFLSM------EDNGCTVDSGML 491



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 141/311 (45%), Gaps = 42/311 (13%)

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
           V P++  Y  +I   C+ G ++       ++  +G   +A  +  L++  C       A 
Sbjct: 83  VTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLC-------AD 135

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF---LDMKSR 308
             TS A+++    +    ELG  C P+V SY +++N LC +    +A EL     D +  
Sbjct: 136 KRTSDAMDI---VLRRMTELG--CIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGG 190

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G  PDVV Y+++I+G+   G  D A   +  +   G +PD  +Y+++I +  K + +++ 
Sbjct: 191 GSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKP 250

Query: 369 LSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
            S   E            ++E+ +LF  +     + D+  ++ L+DG C + ++  A +L
Sbjct: 251 WSHCKE----------GRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKL 300

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRY 488
              +   G +PN VTY+ +I G C                 KI     A+ L  +M    
Sbjct: 301 LSGMVSVGLKPNTVTYSTLINGYC-----------------KISRMEDALVLFKEMESSG 343

Query: 489 VKPDEITVSIL 499
           V PD IT +I+
Sbjct: 344 VSPDIITYNII 354



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 119/285 (41%), Gaps = 56/285 (19%)

Query: 74  FFNYMIHMQPTPFMPSFNSLLGA--LAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131
            F+ M+ +   P + ++++L+    LAGK      + L   + ++GL P+ V+ + L+N 
Sbjct: 265 LFDLMVRIGVKPDIITYSTLIDGYCLAGK--MDEAMKLLSGMVSVGLKPNTVTYSTLING 322

Query: 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
           +CK+  + DA V    +     SPD++T   +++GL    +   A  L+ +         
Sbjct: 323 YCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRIT----ESG 378

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
               +  Y  I+ GLCK+   +    +F ++                    C ++     
Sbjct: 379 TQIELSTYNIILHGLCKNKLTDDALQMFQNL--------------------CLMD----- 413

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
                 L+L     N                  +I++L K    D+AK+LF+   S G++
Sbjct: 414 ------LKLEARTFN-----------------IMIDALLKVGRNDEAKDLFVAFSSNGLV 450

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           P+   Y  + +     G +++  +LF+S+E  GC  D+   N ++
Sbjct: 451 PNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIV 495



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 4/173 (2%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            + DAL  F  M     +P + ++N +L  L   +       L  R+   G   +  + N
Sbjct: 328 RMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYN 387

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           I+++  CK     DA      +       +  T   +I  L   G+  EA  LF  F + 
Sbjct: 388 IILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSS- 446

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
                ++PN   Y  + + +   G + ++  LFL M+  G   D+ + N ++R
Sbjct: 447 ---NGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVR 496


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 126/441 (28%), Positives = 210/441 (47%), Gaps = 57/441 (12%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A+     M+     P   ++NS+L      +     I   +++ + G+ PD V+ N 
Sbjct: 247 MDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNS 306

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           LM+  CK    ++A      + ++   PD+ T   L++G   +G   E   L    V   
Sbjct: 307 LMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNG 366

Query: 188 CRP-----NVI--------------------------PNVICYASIIDGLCKDGFVNKVR 216
             P     N++                          PNV+ Y ++I  LCK G V+   
Sbjct: 367 IHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAM 426

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
           + F  M   G+ P+  VY SLI   C    W+ A+       EL  E ++       IC 
Sbjct: 427 LYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAE-------ELILEMLDRG-----IC- 473

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
            + + + SII+S CK+  V ++++LF  M   G+ P+V+ YS+LIDGYCL G++D+A KL
Sbjct: 474 LNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKL 533

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCILE---- 389
             S+ S G  PD  +YNTLIN Y ++ ++++AL+L+ EM+S GV P+    + IL+    
Sbjct: 534 LSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFH 593

Query: 390 ------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                 A EL+  +  +  +L+L+ +N ++ GLCK+     A  +F+ L     +    T
Sbjct: 594 TRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRT 653

Query: 444 YTVMICGLCIEGGIEKAYDLL 464
           + +MI  L   G  ++A DL 
Sbjct: 654 FNIMIGALLKVGRNDEAKDLF 674



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 127/507 (25%), Positives = 209/507 (41%), Gaps = 100/507 (19%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142
           P   +  +N +  A AGK                 + P   +  IL+ C C+   +   F
Sbjct: 65  PAAAVSRYNRMARAGAGK-----------------VTPTVHTYGILIGCCCRAGRLDLGF 107

Query: 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL-FTKFVAFDCRPNVI-------- 193
            ALG +++K F  + +T   L++GLC   + ++A  +   +     C P+V         
Sbjct: 108 AALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKG 167

Query: 194 --------------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI 227
                                     P+V+ Y ++I+G  K+G  +K    + +M  R I
Sbjct: 168 LCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRI 227

Query: 228 YPDAFVYNSLIRVYCCAVNWEDAKGNT-SAALELHEEFVNGNGELGVICHPDVLSYCSII 286
            PD   Y+S+I   C        KG     A+E+    V  NG +     P+ ++Y SI+
Sbjct: 228 SPDVVTYSSIIAALC--------KGQAMDKAMEVLTTMVK-NGVM-----PNCMTYNSIL 273

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           +  C      +A      M+S G+ PDVV Y+SL+D  C  GR  +ARK+F S+   G  
Sbjct: 274 HGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLE 333

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAEL 393
           PD ++Y TL+  Y+    + E  +L   M+  G+ PD+               + EA  +
Sbjct: 334 PDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLV 393

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
           F  +       ++  +  ++  LCKS  +  A   F+++   G  PN++ YT +I  LCI
Sbjct: 394 FSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCI 453

Query: 454 EGGIEKAYDLLPDMEEKIRECLKAI-------------------ELLHKMAKRYVKPDEI 494
               +KA +L+ +M ++   CL  I                   +L   M +  VKP+ I
Sbjct: 454 FDKWDKAEELILEMLDR-GICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVI 512

Query: 495 TVSILEELLNKDENCHECMNLLPSFLS 521
           T S L +         E   LL S  S
Sbjct: 513 TYSTLIDGYCLAGKMDEATKLLSSMFS 539



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 159/392 (40%), Gaps = 74/392 (18%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           +K   VE++      + M+     P    FN L+ A A ++     + +  ++   GL P
Sbjct: 348 TKGALVEMH---ALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNP 404

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL- 179
           + V+   ++   CK   V DA +   +++ +  +P+++    LI  LC+  K+ +A  L 
Sbjct: 405 NVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELI 464

Query: 180 --------------FTKFVAFDC----------------RPNVIPNVICYASIIDGLCKD 209
                         F   +   C                R  V PNVI Y+++IDG C  
Sbjct: 465 LEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLA 524

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG----------------- 252
           G +++   L   M   G+ PD   YN+LI  YC     +DA                   
Sbjct: 525 GKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITY 584

Query: 253 -----------NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
                       T+AA EL+        +L      ++ +Y  I++ LCK+ L D+A  +
Sbjct: 585 NIILQGLFHTRRTAAAKELYVGITKSGTQL------ELSTYNIILHGLCKNNLTDEALRM 638

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F ++    +  +   ++ +I     +GR D+A+ LFV+  S G +P+  +Y  +  +   
Sbjct: 639 FQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIG 698

Query: 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAEL 393
              +EE   L+  M       DN C +++  L
Sbjct: 699 QGLLEELDQLFFSM------EDNGCTVDSGML 724


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 174/339 (51%), Gaps = 33/339 (9%)

Query: 148 ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207
           ++R+    +VVT   +I GLC  GKF +A  +     A+       P+VI Y +IIDG C
Sbjct: 220 MIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAW----GFSPSVITYNTIIDGYC 275

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
           K G + K   L  +M  + I+P+   +N LI  +C          N +AA ++ EE    
Sbjct: 276 KAGKMFKADALLKEMVAKRIHPNEITFNILIDGFC-------RDENVTAAKKVFEEMQRQ 328

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
                    P+V++Y S+IN LC +  +D+A  L   M   G+ P+VV Y++LI+G+C  
Sbjct: 329 G------LQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKK 382

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS-- 385
             + +AR++   I   G  P+  ++NTLI++Y K  ++++A  L   M+  GV P+ S  
Sbjct: 383 KMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTY 442

Query: 386 -CIL----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP- 433
            C++          EA +L + +     + DL  +N LVD LCK    R A  L  ++  
Sbjct: 443 NCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTL 502

Query: 434 --RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
             + G   N+VTY V+I G C +G +E+A  LL +M EK
Sbjct: 503 MEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEK 541



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 151/307 (49%), Gaps = 24/307 (7%)

Query: 84  TPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDA 141
           +P + ++N+++     AGK +  +   L + +    + P+ ++ NIL++ FC+   V+ A
Sbjct: 261 SPSVITYNTIIDGYCKAGKMFKAD--ALLKEMVAKRIHPNEITFNILIDGFCRDENVTAA 318

Query: 142 FVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYAS 201
                 + R+   P+VVT   LI GLC  GK  EA GL  K      +    PNV+ Y +
Sbjct: 319 KKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLK----PNVVTYNA 374

Query: 202 IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261
           +I+G CK   + + R +  D+  RG+ P+   +N+LI  Y  A   +DA    S  L+  
Sbjct: 375 LINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTG 434

Query: 262 EEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
                       +C P+V +Y  +I   C++  V +A++L  +M+  G+  D+V Y+ L+
Sbjct: 435 ------------VC-PNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILV 481

Query: 322 DGYCLMGRIDDARKLF---VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
           D  C  G    A +L      +E +G   +  +YN LI  +    K+EEA  L  EM+  
Sbjct: 482 DALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEK 541

Query: 379 GVRPDNS 385
           G+ P+ +
Sbjct: 542 GLIPNRT 548



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 148/335 (44%), Gaps = 54/335 (16%)

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL--IRVYCCA----- 244
            I NV  +  ++  L      NK+R L         Y ++ +++SL  +  + CA     
Sbjct: 103 AIHNVEQFCRLLHLLANAKNYNKIRALLDSFAKNAHYSNSTIFHSLSVLGSWGCANSIIV 162

Query: 245 --VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
             + W   K   +  ++L  E  +  G+ G       LS   ++ SL K+  +   + ++
Sbjct: 163 DMLVWAYVK---NGEMDLALEGFDRAGDYGF--RLSALSCNPMLVSLVKEGRIGVVESVY 217

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
            +M  R I  +VV +  +I+G C +G+   A  +   +++ G  P   +YNT+I+ Y K 
Sbjct: 218 KEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKA 277

Query: 363 EKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRL 422
            K+ +A +L  EM++  + P+                         FN L+DG C+   +
Sbjct: 278 GKMFKADALLKEMVAKRIHPNE----------------------ITFNILIDGFCRDENV 315

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------- 469
            +A ++F+++ R G +PNVVTY  +I GLC  G +++A  L   M               
Sbjct: 316 TAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNAL 375

Query: 470 -----KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                K +   +A E+L  + KR + P+ IT + L
Sbjct: 376 INGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTL 410



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 110/252 (43%), Gaps = 38/252 (15%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L++AL   + M  M   P + ++N+L+     KK       + + +   GL P+ ++ N
Sbjct: 349 KLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFN 408

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ + K   + DAF+    +L     P+V T  CLI G C +G   EA  L  +    
Sbjct: 409 TLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGN 468

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD----MKGRGIYPDAFVYNSLIRVYC 242
             +     +++ Y  ++D LCK G   K  V  LD    M+ +G   +   YN LI+ +C
Sbjct: 469 GLK----ADLVTYNILVDALCKKGETRKA-VRLLDEMTLMEKKGRRANIVTYNVLIKGFC 523

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
                   KG    A  L  E +    E G+I  P+  +Y         D+L D      
Sbjct: 524 -------NKGKLEEANRLLNEML----EKGLI--PNRTTY---------DILRD------ 555

Query: 303 LDMKSRGIIPDV 314
            +M  +G IPD+
Sbjct: 556 -EMMEKGFIPDI 566



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 89/202 (44%), Gaps = 44/202 (21%)

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           +  II D++V++     Y   G +D A + F      G      S N ++ S  K  ++ 
Sbjct: 157 ANSIIVDMLVWA-----YVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIG 211

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
              S+Y EMI                        +  +++  F+ +++GLCK  + + A 
Sbjct: 212 VVESVYKEMIR----------------------RRIGVNVVTFDVVINGLCKVGKFQKAG 249

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAK 486
           ++ + +  +G  P+V+TY  +I G C  G + KA  LL +M                +AK
Sbjct: 250 DVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEM----------------VAK 293

Query: 487 RYVKPDEITVSILEELLNKDEN 508
           R + P+EIT +IL +   +DEN
Sbjct: 294 R-IHPNEITFNILIDGFCRDEN 314


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 123/430 (28%), Positives = 209/430 (48%), Gaps = 36/430 (8%)

Query: 56  YLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNT 115
           +L   SK+GE +L+    FF  M+     P + ++N ++G +  +   +    L E++  
Sbjct: 103 FLHRLSKAGEGDLSRD--FFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKK 160

Query: 116 IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVF-SPDVVTLGCLIRGLCMQGKFT 174
           +GL PD V+ N L++ + K IG+ D  V L   ++ +   PDV+T   LI   C      
Sbjct: 161 MGLTPDIVTYNTLIDGYGK-IGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGML 219

Query: 175 EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVY 234
            A   F +    D +PNVI     Y+++ID LCK+G +      F+DM   G+ P+ F Y
Sbjct: 220 RAFEFFREMKDKDLKPNVIS----YSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTY 275

Query: 235 NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294
           +SLI   C A       GN   A  L +E +  + +L ++      +Y ++++ LC++ +
Sbjct: 276 SSLIDANCKA-------GNLGEAFMLADEMLQEHVDLNIV------TYTTLLDGLCEEGM 322

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           +++A+ELF  M   G+ P++  Y++LI G+  +  +D A +LF  +  +   PD   + T
Sbjct: 323 MNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGT 382

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL--------------EAAELFRTLHNT 400
           ++       K+EE   +  EM   G+   N  I               EA  L   + + 
Sbjct: 383 IVWGLCSESKLEECKIIMTEMKESGIGA-NPVIYTTLMDAYFKAGNRTEAINLLEEMRDL 441

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
             E+ +  F  L+DGLCK   ++ A   F ++P +  +PNV  YT +I GLC    I  A
Sbjct: 442 GTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDA 501

Query: 461 YDLLPDMEEK 470
             L  +M++K
Sbjct: 502 KKLFDEMQDK 511



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 111/428 (25%), Positives = 193/428 (45%), Gaps = 60/428 (14%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           A  FF  M      P + S+++L+ AL  +      I     +  +GLLP+  + + L++
Sbjct: 221 AFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLID 280

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
             CK   + +AF+    +L++    ++VT   L+ GLC +G   EA  LF        + 
Sbjct: 281 ANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAM----GKA 336

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
            V PN+  Y ++I G  K   ++K   LF +M+ + I PD  ++ +++   C     E+ 
Sbjct: 337 GVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEEC 396

Query: 251 K----------------------------GNTSAALELHEEFVNGNGELGVICHPDVLSY 282
           K                            GN + A+ L EE  +   E+ V+      ++
Sbjct: 397 KIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVV------TF 450

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
           C++I+ LCK  LV +A   F  M    + P+V VY++LIDG C    I DA+KLF  ++ 
Sbjct: 451 CALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQD 510

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF 402
           +  IPD  +Y  +I+   K    +EAL++  +M+ MG+                      
Sbjct: 511 KNMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMGI---------------------- 548

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
           ELDL  +  LV GL +  +++ A +   ++   G  P+    T ++      G I++A +
Sbjct: 549 ELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPDETLCTRLLRKHYELGNIDEAIE 608

Query: 463 LLPDMEEK 470
           L  ++ EK
Sbjct: 609 LQNELVEK 616



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 132/256 (51%), Gaps = 37/256 (14%)

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
           +G    P V +Y  +I  +CK+  +  A+ LF  MK  G+ PD+V Y++LIDGY  +G +
Sbjct: 124 VGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLL 183

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEA 390
           D++  LF  ++  GC PD  +YN LINS+ K + +  A   + EM    ++P+   ++  
Sbjct: 184 DESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPN---VISY 240

Query: 391 AELFRTL-------HNTKFELDLT---------VFNCLVDGLCKSWRLRSAWELFKKLPR 434
           + L   L          KF +D+T          ++ L+D  CK+  L  A+ L  ++ +
Sbjct: 241 STLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQ 300

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLL---------PDMEE---------KIRECLK 476
              + N+VTYT ++ GLC EG + +A +L          P+++          K+R   K
Sbjct: 301 EHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDK 360

Query: 477 AIELLHKMAKRYVKPD 492
           A+EL ++M ++ +KPD
Sbjct: 361 AMELFNEMREKDIKPD 376



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 142/360 (39%), Gaps = 46/360 (12%)

Query: 57  LSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           +  N K+G   L +A    + M+       + ++ +LL  L  +        L   +   
Sbjct: 279 IDANCKAGN--LGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKA 336

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ P+  +   L++   K+  +  A      +  K   PD++  G ++ GLC + K  E 
Sbjct: 337 GVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEEC 396

Query: 177 SGLFTKFVAFDCRPNVI-------------------------------PNVICYASIIDG 205
             + T+        N +                                 V+ + ++IDG
Sbjct: 397 KIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDG 456

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
           LCK G V +    F  M    + P+  VY +LI   C      DAK       +L +E  
Sbjct: 457 LCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAK-------KLFDEMQ 509

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
           + N        PD ++Y ++I+   K     +A  +   M   GI  D+  Y+SL+ G  
Sbjct: 510 DKN------MIPDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGLS 563

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
             G++  ARK    +  +G IPD +    L+  + ++  ++EA+ L  E++  G+   NS
Sbjct: 564 QCGQVQQARKFLAEMIGKGIIPDETLCTRLLRKHYELGNIDEAIELQNELVEKGLIHGNS 623



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 128/284 (45%), Gaps = 17/284 (5%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A+  FN M      P +  + +++  L  +        +   +   G+  + V    
Sbjct: 358 MDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTT 417

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           LM+ + K    ++A   L  +        VVT   LI GLC +G   EA   F +    D
Sbjct: 418 LMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHD 477

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            +PNV      Y ++IDGLCK+  +   + LF +M+ + + PD   Y ++I       + 
Sbjct: 478 LQPNVA----VYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMI-------DG 526

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               GN   AL +  + +    E+G+    D+ +Y S++  L +   V +A++   +M  
Sbjct: 527 NLKHGNFQEALNMRNKMM----EMGI--ELDLYAYTSLVWGLSQCGQVQQARKFLAEMIG 580

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
           +GIIPD  + + L+  +  +G ID+A +L   +  +G I   S+
Sbjct: 581 KGIIPDETLCTRLLRKHYELGNIDEAIELQNELVEKGLIHGNSN 624



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 94/207 (45%), Gaps = 13/207 (6%)

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
           +C P    + ++ + L +  +++ A + FL M    ++P     ++ +      G  D +
Sbjct: 57  VCVPGFGVFDALFSVLVELGMLEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLS 116

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCI-- 387
           R  F  +   G  P   +YN +I    K   +  A SL+ +M  MG+ PD    N+ I  
Sbjct: 117 RDFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDG 176

Query: 388 -------LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
                   E+  LF  +     E D+  +N L++  CK   +  A+E F+++     +PN
Sbjct: 177 YGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPN 236

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDM 467
           V++Y+ +I  LC EG ++ A     DM
Sbjct: 237 VISYSTLIDALCKEGMMQMAIKFFVDM 263



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/214 (20%), Positives = 91/214 (42%), Gaps = 40/214 (18%)

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
           +P   V+ +L      +G ++ A + F+ +     +P   S N  ++  SK  + + +  
Sbjct: 59  VPGFGVFDALFSVLVELGMLEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRD 118

Query: 371 LYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
            + +M+  G+ P                 T F      +N ++  +CK   + +A  LF+
Sbjct: 119 FFRDMVGAGIAP-----------------TVF-----TYNIMIGHVCKEGDMLTARSLFE 156

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIR 472
           ++ + G  P++VTY  +I G    G ++++  L  +M+                   K +
Sbjct: 157 QMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFK 216

Query: 473 ECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
             L+A E   +M  + +KP+ I+ S L + L K+
Sbjct: 217 GMLRAFEFFREMKDKDLKPNVISYSTLIDALCKE 250


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 124/466 (26%), Positives = 214/466 (45%), Gaps = 50/466 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +  +A+  F+  +     P   + N L+ ALA  + Y     +  R+  + +LP F SL+
Sbjct: 54  QFTEAVSLFHSALDFNLLPSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLS 113

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+ CF         F  +G +L++ F+ +V  +  +++GLC  G   EA GL  +    
Sbjct: 114 ALIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREM--- 170

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             R +V P+++ Y ++I+GLCK   + +   L L+M+  G +P++    +L+   C    
Sbjct: 171 -GRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLC---- 225

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G    A+EL E       +       DV+ Y ++I+  C +  +D+ KELF +M 
Sbjct: 226 ---KDGRMDEAMELLEAMKKKGFD------ADVVLYGTLISGFCNNGNLDRGKELFDEML 276

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            +GI  +VV YS L+ G C +G+  +A  +  ++   G  PD  +Y  LI+   K  +  
Sbjct: 277 GKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRAT 336

Query: 367 EALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFELDLTVFNCLV 413
            A+ L   M+  G  P N               +++A ++ R +     + D+  +N L+
Sbjct: 337 HAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLM 396

Query: 414 DGLCKSWRLRSAWELFKKL--PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK- 470
            GLC   ++  A +LF  +       EPNV T+ ++I GLC EG + KA  +   M +K 
Sbjct: 397 KGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKG 456

Query: 471 -----------IRECLK------AIELLHKMAKRYVKPDEITVSIL 499
                      +  CLK      A+EL  ++      P+  T SIL
Sbjct: 457 SCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSIL 502



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 120/464 (25%), Positives = 201/464 (43%), Gaps = 54/464 (11%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +  +A    N M      P + ++  L+  L       + + L   +   G  P  V+ N
Sbjct: 299 QWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYN 358

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +L++  CK   V DAF  L  ++ K    DVVT   L++GLC +GK  EA  LF     F
Sbjct: 359 VLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSM--F 416

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           D    + PNV  +  +I GLCK+G + K   +   M  +G   +   YN L+     A  
Sbjct: 417 DNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKA-- 474

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G    A+EL ++ +    +LG +  P+  +Y  +I+  CK  +++ AK LF +M+
Sbjct: 475 -----GKIKEAMELWKQVL----DLGFV--PNSFTYSILIDGFCKMRMLNIAKGLFCEMR 523

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           + G+ P +  Y++L+   C  G ++ A+ LF  + +  C PD  S+NT+I+   K    +
Sbjct: 524 THGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQ 583

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
               L  +M+ MG+RPD                         F+ L++ L K   L  A 
Sbjct: 584 FVKELQMKMVEMGLRPDA----------------------LTFSTLINRLSKLGELDEAK 621

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAK 486
              +++   G  P+ + Y  ++ GL  +G                 +  + I LLH+MA 
Sbjct: 622 SALERMVASGFTPDALVYDSLLKGLSSKG-----------------DTTEIINLLHQMAA 664

Query: 487 RYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           +    D   VS +   L       + M LLP+F     E + ++
Sbjct: 665 KGTVLDRKIVSTILTCLCHSIQEVDVMELLPTFFQGTSEGASIS 708



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 171/403 (42%), Gaps = 53/403 (13%)

Query: 35  EPSSLHSNSV-------STVEEKTKLLKYLSENSKSGEV--------------ELNDALC 73
           EPS++  N +         V +  K+L+ + E  K  +V              ++++AL 
Sbjct: 351 EPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALK 410

Query: 74  FFNYMIH----MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
            FN M      ++P  F  +FN L+G L  +      + +  ++   G   + V+ N+L+
Sbjct: 411 LFNSMFDNENCLEPNVF--TFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLL 468

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
               K   + +A     ++L   F P+  T   LI G C       A GLF +       
Sbjct: 469 GGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLN 528

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
           P +      Y +++  LCK+G + + + LF +M      PD   +N++I     A +++ 
Sbjct: 529 PALFD----YNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQF 584

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
            K       EL  + V    E+G+   PD L++ ++IN L K   +D+AK     M + G
Sbjct: 585 VK-------ELQMKMV----EMGL--RPDALTFSTLINRLSKLGELDEAKSALERMVASG 631

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY-SKIEKVE-- 366
             PD +VY SL+ G    G   +   L   + ++G + D    +T++      I++V+  
Sbjct: 632 FTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLCHSIQEVDVM 691

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVF 409
           E L  + +  S G        +   EL   LH +  +L L  F
Sbjct: 692 ELLPTFFQGTSEGAS------ISCNELLMQLHQSHPKLQLHPF 728


>gi|224128023|ref|XP_002329235.1| predicted protein [Populus trichocarpa]
 gi|222871016|gb|EEF08147.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 126/438 (28%), Positives = 199/438 (45%), Gaps = 68/438 (15%)

Query: 55  KYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAG-KKYYVNFICLSERL 113
           K+ ++++      ++DAL  FN+M+H +P P +  F  LL A+   ++YY   I LS  +
Sbjct: 52  KHQNDDASPSFRNIDDALASFNHMLHRKPLPCIIQFTKLLSAIVKMRQYYDAVISLSRPM 111

Query: 114 NTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF 173
              GL P+  +LNIL+NCFCK+  V   F  L ++++    PDVV    LI GLC  GKF
Sbjct: 112 ELAGLSPNTYTLNILINCFCKLQHVDLGFSVLAKVIKLGLQPDVVPFTTLINGLCKVGKF 171

Query: 174 TEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233
           ++A  LF + V              Y S+I GLC      +   +  +M    I PD   
Sbjct: 172 SQAVELFDETVERG-----------YNSLIHGLCNCSQWKEASAILNEMTSLNIMPDIVT 220

Query: 234 YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDV 293
           +N L+  +C      +A+G      E+  E              DV++Y S++      +
Sbjct: 221 FNVLVDTFCKEGKVSEAQGVLKTMTEMSVEL-------------DVVTYNSLMYGHSLWM 267

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353
            V +A++LF  M ++G  P+V  Y+ LI+GYC    ID+A++LF  +  +G  P+  SYN
Sbjct: 268 EVVEARKLFGFMITKGCKPNVFSYNILINGYCKAEMIDEAKQLFNEMIHQGLTPNIVSYN 327

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLV 413
           T  + + ++ K+ EA  L   M + G  PD                      L  ++ L+
Sbjct: 328 T--HGFCQLGKLREAQELNENMHTNGNLPD----------------------LCTYSILL 363

Query: 414 DGLCKSWR-------------------LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
           DG CK                      L  A E F+K+   G  PN  +Y V+I G    
Sbjct: 364 DGFCKQGNHIAARKLFSELFVQGLQRLLDEALETFRKMEEDGCPPNEWSYNVIIRGFLRH 423

Query: 455 GGIEKAYDLLPDMEEKIR 472
               +A  L+ +M ++ R
Sbjct: 424 RDESRAVQLIGEMRDRGR 441


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 183/396 (46%), Gaps = 47/396 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G +P+  + N +++ F K+     A+V    + R      + T   +I  LC +GK  +A
Sbjct: 176 GFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKA 235

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
                +F+       V PNV+ Y +II G C  G   + RV+F  MK +G+ PD + YNS
Sbjct: 236 K----EFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNS 291

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
            I   C     E+A G     LE            G++  P+ ++Y ++I+  C    +D
Sbjct: 292 FISGLCKEGRLEEASGLICKMLEG-----------GLV--PNAVTYNALIDGYCNKGDLD 338

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           KA     +M S+GI+  +V Y+  I    + GR+ DA  +   +  +G +PD  ++N LI
Sbjct: 339 KAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILI 398

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRP-------------DNSCILEAAELFRTLHNTKFE 403
           N Y +    + A  L  EM+  G++P               + + EA  LF  +      
Sbjct: 399 NGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLL 458

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D+ VFN L+DG C +  +  A++L K++      P+ +TY  ++ G C EG +E+A   
Sbjct: 459 PDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEAR-- 516

Query: 464 LPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                          +LL +M +R +KPD I+ + L
Sbjct: 517 ---------------QLLDEMKRRGIKPDHISYNTL 537



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 130/476 (27%), Positives = 211/476 (44%), Gaps = 98/476 (20%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGAL--AGK-KYYVNFICLSERLNTIGLLPDFVSLNI 127
           A   +  M  M     + +FN ++  L   GK K    FI     + T+G+ P+ V+ N 
Sbjct: 200 AWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIG---HMETLGVKPNVVTYNT 256

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           +++  C       A V    +  K   PD  T    I GLC +G+  EASGL  K +   
Sbjct: 257 IIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKML--- 313

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNK-----------------------VRVLFLD--- 221
               ++PN + Y ++IDG C  G ++K                       +  LF++   
Sbjct: 314 -EGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRM 372

Query: 222 ---------MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
                    M+ +G+ PDA  +N LI  YC         G+   A  L +E V G G   
Sbjct: 373 GDADNMIKEMREKGMMPDAVTHNILINGYCRC-------GDAKRAFGLLDEMV-GKG--- 421

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
               P +++Y S+I  L K   + +A  LF  ++  G++PD++V+++LIDG+C  G ID 
Sbjct: 422 --IQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDR 479

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392
           A +L   +++   +PD  +YNTL+  Y +  KVEEA  L  EM   G++PD+        
Sbjct: 480 AFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDH-------- 531

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
                           +N L+ G  K   ++ A+ +  ++   G +P ++TY  +I GLC
Sbjct: 532 --------------ISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLC 577

Query: 453 IEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEIT-VSILEELLNKDE 507
                            K +E   A ELL +M  + + PD+ T +SI+E +   D+
Sbjct: 578 -----------------KNQEGEHAEELLKEMVSKGITPDDSTYLSIIEAMETVDD 616



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 146/300 (48%), Gaps = 17/300 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L+ A  + + MI       + ++N  + AL  +    +   + + +   G++PD V+ N
Sbjct: 336 DLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHN 395

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           IL+N +C+      AF  L  ++ K   P +VT   LI  L  + +  EA  LF+K    
Sbjct: 396 ILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQ-- 453

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             +  ++P++I + ++IDG C +G +++   L  +M    + PD   YN+L++ YC    
Sbjct: 454 --QEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYC---- 507

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
               +G    A +L +E        G+   PD +SY ++I+   K   +  A  +  +M 
Sbjct: 508 ---REGKVEEARQLLDEM----KRRGI--KPDHISYNTLISGYSKRGDMKDAFRVRDEMM 558

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           + G  P ++ Y++LI G C     + A +L   + S+G  PD S+Y ++I +   ++ +E
Sbjct: 559 TTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSIIEAMETVDDLE 618



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 76/157 (48%), Gaps = 22/157 (14%)

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
            +++  L+  YC + + ++A + F  I+ +G +P+  + N +++ + K+ + + A  LY 
Sbjct: 146 TLIFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYA 205

Query: 374 EMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
           EM  M +R                        L  FN +++ LCK  +L+ A E    + 
Sbjct: 206 EMFRMNIRS----------------------SLYTFNIMINVLCKEGKLKKAKEFIGHME 243

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
             G +PNVVTY  +I G C+ G  ++A  +   M++K
Sbjct: 244 TLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDK 280


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 129/469 (27%), Positives = 217/469 (46%), Gaps = 57/469 (12%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           EL + L F   MI+    P + +  SL+              + E L   G +PD ++ N
Sbjct: 122 ELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYN 181

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +L+  +CK   +  A   L R+     +PDVVT   ++R LC  GK  EA  +  + +  
Sbjct: 182 VLIGGYCKSGEIDKALQVLERM---SVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQR 238

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           +C     P+VI Y  +I+  C D  V +   L  +M+ +G  PD   YN LI   C    
Sbjct: 239 EC----YPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGIC---- 290

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
               +G    A++    F+N     G  C P+V+++  I+ S+C       A+ L  DM 
Sbjct: 291 ---KEGRLDEAIK----FLNNMPLYG--CQPNVITHNIILRSMCSTGRWMDAERLLADML 341

Query: 307 SRGIIPDVVVYSSLIDGYC---LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            +G  P VV ++ LI+  C   L+GR  D   +   +   GC+P++ SYN L++ + + +
Sbjct: 342 RKGCSPSVVTFNILINFLCRKRLLGRAID---VLEKMPKHGCMPNSLSYNPLLHGFCQEK 398

Query: 364 KVEEALSLYGEMISMGVRPD----NSCILE---------AAELFRTLHNTKFELDLTVFN 410
           K++ A+     M+S G  PD    N+ +           A E+   L +      L  +N
Sbjct: 399 KMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYN 458

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE- 469
            ++DGL K  +   A EL +++ R G +P+++TY+ ++ GL  EG +++A  +  DME  
Sbjct: 459 TVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGL 518

Query: 470 -----------------KIRECLKAIELLHKMAKRYVKPDEITVSILEE 501
                            K ++  +AI+ L  M ++  KP + T +IL E
Sbjct: 519 SIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILIE 567



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 127/278 (45%), Gaps = 34/278 (12%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PDV++  S+I   C+     KA  +   +++ G +PDV+ Y+ LI GYC  G ID A ++
Sbjct: 140 PDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALQV 199

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------- 383
              +E     PD  +YNT++ S     K++EA+ +    +     PD             
Sbjct: 200 ---LERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCN 256

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
           +S + +A +L   +     + D+  +N L++G+CK  RL  A +    +P YG +PNV+T
Sbjct: 257 DSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVIT 316

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEK------------------IRECLKAIELLHKMA 485
           + +++  +C  G    A  LL DM  K                   R   +AI++L KM 
Sbjct: 317 HNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMP 376

Query: 486 KRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
           K    P+ ++ + L     +++     +  L   +SR 
Sbjct: 377 KHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRG 414



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 128/292 (43%), Gaps = 17/292 (5%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  L++A+ F N M      P + + N +L ++     +++   L   +   G  P  V+
Sbjct: 292 EGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVT 351

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            NIL+N  C+   +  A   L ++ +    P+ ++   L+ G C + K   A       V
Sbjct: 352 FNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMV 411

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
           +  C     P+++ Y +++  LCKDG  +    +   +  +G  P    YN++I      
Sbjct: 412 SRGC----YPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVI------ 461

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
            +     G T  A EL EE             PD+++Y +++  L  +  VD+A ++F D
Sbjct: 462 -DGLTKVGKTEYAAELLEEMRRKG------LKPDIITYSTLLRGLGCEGKVDEAIKIFHD 514

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           M+   I P  V Y++++ G C   +   A      +  +GC P  ++Y  LI
Sbjct: 515 MEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILI 566



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 115/254 (45%), Gaps = 17/254 (6%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DA      M+    +P + +FN L+  L  K+     I + E++   G +P+ +S N L+
Sbjct: 332 DAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLL 391

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           + FC+   +  A   L  ++ +   PD+VT   L+  LC  GK   A  +  +  +  C 
Sbjct: 392 HGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCS 451

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
           P +I     Y ++IDGL K G       L  +M+ +G+ PD   Y++L+R   C      
Sbjct: 452 PVLIT----YNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGC------ 501

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
            +G    A+++  +        G+   P  ++Y +I+  LCK     +A +    M  +G
Sbjct: 502 -EGKVDEAIKIFHDME------GLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKG 554

Query: 310 IIPDVVVYSSLIDG 323
             P    Y+ LI+G
Sbjct: 555 CKPTKATYTILIEG 568


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 127/496 (25%), Positives = 217/496 (43%), Gaps = 75/496 (15%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           + N ++ AL   +   N       +   G+ PD V+ N L+N +C+   + +AF  +  +
Sbjct: 99  TLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSM 158

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN----------------- 191
             K   P V T   +I GLC  GK+  A G+  + +     P+                 
Sbjct: 159 SGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNM 218

Query: 192 --------------VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
                         V+P+++ ++++I  L K+G +++    F DMK  G+ PD  +Y  L
Sbjct: 219 MDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTIL 278

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           I  +C         G  S AL++ +E +    E G  C  DV++Y +I+N LCK+ ++ +
Sbjct: 279 IGGFC-------RNGVMSEALKVRDEML----EQG--CVLDVVTYNTILNGLCKEKMLSE 325

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A ELF +M  RG+ PD   +++LI+GY   G ++ A  LF  +      PD  +YNTLI+
Sbjct: 326 ADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLID 385

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFEL 404
            + K  ++E+   L+ +MIS  + P++              C+ EA  L+  +    FE 
Sbjct: 386 GFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEA 445

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            +   N +V G C++     A E    +   G  P+ +TY  +I G   E  +++A+ L+
Sbjct: 446 TIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALV 505

Query: 465 PDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
             ME                   +     +A  ++ KM +R V PD  T + L       
Sbjct: 506 NKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQ 565

Query: 507 ENCHECMNLLPSFLSR 522
            N  E   +    L R
Sbjct: 566 NNLKEAFRVHDEMLQR 581



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 135/458 (29%), Positives = 212/458 (46%), Gaps = 50/458 (10%)

Query: 91  NSLLGALAGKKYYVNFIC-LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149
           NSLLG L  K  +V+    + + +   G+  +  +LNI++N  CK   + +    L  + 
Sbjct: 66  NSLLGGLV-KVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDME 124

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD 209
            K   PDVVT   LI   C QG   EA  L         +P V      Y +II+GLCK 
Sbjct: 125 EKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFT----YNAIINGLCKT 180

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
           G   + + +  +M   G+ PD   YN L+ V CC         N   A  + +E  +   
Sbjct: 181 GKYLRAKGVLDEMLKIGMSPDTATYNILL-VECCR------NDNMMDAERIFDEMPSQ-- 231

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
             GV+  PD++S+ ++I  L K+  +D+A + F DMK+ G+ PD V+Y+ LI G+C  G 
Sbjct: 232 --GVV--PDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGV 287

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------ 383
           + +A K+   +  +GC+ D  +YNT++N   K + + EA  L+ EM   GV PD      
Sbjct: 288 MSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTT 347

Query: 384 -------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
                  +  + +A  LF  +     + D+  +N L+DG CK   +    EL+  +    
Sbjct: 348 LINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRR 407

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE------------------CLKAI 478
             PN ++Y ++I G C  G + +A+ L  +M EK  E                   +KA 
Sbjct: 408 IYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKAD 467

Query: 479 ELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           E L  M  + + PD IT + L     K+EN      L+
Sbjct: 468 EFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALV 505



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 157/348 (45%), Gaps = 46/348 (13%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DA   F+ M      P + SF++L+G L+        +     +   GL PD V   IL+
Sbjct: 220 DAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILI 279

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
             FC+   +S+A      +L +    DVVT   ++ GLC +   +EA  LFT+       
Sbjct: 280 GGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVF 339

Query: 190 P-------------------------------NVIPNVICYASIIDGLCKDGFVNKVRVL 218
           P                               N+ P+V+ Y ++IDG CK   + KV  L
Sbjct: 340 PDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNEL 399

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI-CHP 277
           + DM  R IYP+   Y  LI  YC         G  S A  L +E V    E  +I C+ 
Sbjct: 400 WNDMISRRIYPNHISYGILINGYC-------NMGCVSEAFRLWDEMVEKGFEATIITCNT 452

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
            V  YC   N++       KA E   +M  +GI+PD + Y++LI+G+     +D A  L 
Sbjct: 453 IVKGYCRAGNAV-------KADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALV 505

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
             +E+ G +PD  +YN ++N +S+  +++EA  +  +MI  GV PD S
Sbjct: 506 NKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRS 553



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 159/336 (47%), Gaps = 43/336 (12%)

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL 260
           S++ GL K G+V+    ++ ++   G+  + +  N +I   C            +  +E 
Sbjct: 67  SLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALC-----------KNQKIEN 115

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
            + F++   E GV   PDV++Y ++IN+ C+  L+++A EL   M  +G+ P V  Y+++
Sbjct: 116 TKSFLSDMEEKGVF--PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAI 173

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           I+G C  G+   A+ +   +   G  PDT++YN L+    + + + +A  ++ EM S GV
Sbjct: 174 INGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGV 233

Query: 381 RPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
            PD             N C+ +A + FR + N     D  ++  L+ G C++  +  A +
Sbjct: 234 VPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALK 293

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKR 487
           +  ++   G   +VVTY  ++ GLC E  + +A +L  +M E                 R
Sbjct: 294 VRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTE-----------------R 336

Query: 488 YVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
            V PD  T + L    +KD N ++ + L    + RN
Sbjct: 337 GVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRN 372



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 130/320 (40%), Gaps = 52/320 (16%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  L++A   F  M      P   +F +L+   +        + L E +    L PD V+
Sbjct: 320 EKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVT 379

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N L++ FCK   +         ++ +   P+ ++ G LI G C  G  +EA  L+ + V
Sbjct: 380 YNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMV 439

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
                      +I   +I+ G C+ G   K      +M  +GI PD   YN+L       
Sbjct: 440 ----EKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTL------- 488

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                                                    IN   K+  +D+A  L   
Sbjct: 489 -----------------------------------------INGFIKEENMDRAFALVNK 507

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M++ G++PDV+ Y+ +++G+   GR+ +A  + + +   G  PD S+Y +LIN +     
Sbjct: 508 MENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNN 567

Query: 365 VEEALSLYGEMISMGVRPDN 384
           ++EA  ++ EM+  G  PD+
Sbjct: 568 LKEAFRVHDEMLQRGFVPDD 587



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 18/121 (14%)

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
           E  E FR L +    + +   N L+ GL K   +  AWE+++++ R G + NV T  +MI
Sbjct: 45  EGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMI 104

Query: 449 CGLCIEGGIEKAYDLLPDMEEK----------------IRECL--KAIELLHKMAKRYVK 490
             LC    IE     L DMEEK                 R+ L  +A EL+  M+ + +K
Sbjct: 105 NALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLK 164

Query: 491 P 491
           P
Sbjct: 165 P 165


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 112/396 (28%), Positives = 179/396 (45%), Gaps = 47/396 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+LP   + N L++ F K+     A+V    + R      V T   +I  LC +GK  +A
Sbjct: 181 GVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKA 240

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
                 FV       V PN++ Y +I+ G C  G V     +   MK + I PD+F Y S
Sbjct: 241 KD----FVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGS 296

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI   C        +G    A ++ EE V           P  + Y ++I+  C    +D
Sbjct: 297 LISGMC-------KQGRLEEASKIFEEMVQKG------LRPSAVIYNTLIDGFCNKGNLD 343

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A     +M  +GI P +  Y+SLI    +  R D+A  +   I+ +G  PD  +YN LI
Sbjct: 344 MASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILI 403

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFE 403
           N Y +    ++A  L+ EM++ G++P                 + EA +LF+ + +    
Sbjct: 404 NGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVL 463

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D+ +FN L+DG C +  ++ A+EL K + R    P+ VT+  ++ G C EG +E+A   
Sbjct: 464 PDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEAR-- 521

Query: 464 LPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                          EL  +M +R +KPD I+ + L
Sbjct: 522 ---------------ELFDEMKRRGIKPDHISFNTL 542



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 114/423 (26%), Positives = 199/423 (47%), Gaps = 58/423 (13%)

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           + NI++N  CK   +  A   +G +      P++VT   ++ G C  G+   A  + T  
Sbjct: 223 TFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTM 282

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
                R  + P+   Y S+I G+CK G + +   +F +M  +G+ P A +YN+LI  +C 
Sbjct: 283 K----RQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFC- 337

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                  KGN   A    +E +           P + +Y S+I++L  +   D+A+ +  
Sbjct: 338 ------NKGNLDMASAYKDEMLKKG------ISPTMSTYNSLIHALFMEQRTDEAECMIK 385

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV---SIESEGCIPDTSSYNTLINSYS 360
           +++ +GI PD + Y+ LI+GYC   R  +A+K F+    + + G  P   +Y +L++  S
Sbjct: 386 EIQEKGISPDAITYNILINGYC---RCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLS 442

Query: 361 KIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLT 407
           K  +++EA  L+ ++ S GV PD             NS +  A EL + +   K   D  
Sbjct: 443 KKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEV 502

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            FN ++ G C+  ++  A ELF ++ R G +P+ +++  +I G    G I+ A+ +  +M
Sbjct: 503 TFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEM 562

Query: 468 EE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNK---- 505
            +                  K +E   A ELL +M  + + PD+ T   L E + K    
Sbjct: 563 LDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKVNIP 622

Query: 506 DEN 508
           DEN
Sbjct: 623 DEN 625



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 112/390 (28%), Positives = 179/390 (45%), Gaps = 67/390 (17%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
            + T G+ P+ V+ N +++ +C    V  A   L  + R+   PD  T G LI G+C QG
Sbjct: 246 HMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQG 305

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC-----------KDGFVNK------ 214
           +  EAS +F + V    R    P+ + Y ++IDG C           KD  + K      
Sbjct: 306 RLEEASKIFEEMVQKGLR----PSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTM 361

Query: 215 ------VRVLFLDMKG------------RGIYPDAFVYNSLIRVYC-CAVNWEDAKGNTS 255
                 +  LF++ +             +GI PDA  YN LI  YC CA        N  
Sbjct: 362 STYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCA--------NAK 413

Query: 256 AALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV 315
            A  LH+E       L     P   +Y S+++ L K   + +A +LF  + S G++PDV+
Sbjct: 414 KAFLLHDEM------LASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVI 467

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
           ++++LIDG+C    +  A +L   ++     PD  ++NT++  + +  KVEEA  L+ EM
Sbjct: 468 MFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEM 527

Query: 376 ISMGVRPDN-------------SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRL 422
              G++PD+               I +A  +   + +T F   +  +N LV GLCK+   
Sbjct: 528 KRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEG 587

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
             A EL K++   G  P+  TY  +I G+ 
Sbjct: 588 DLAEELLKEMVSKGMTPDDTTYFTLIEGIA 617



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 148/339 (43%), Gaps = 45/339 (13%)

Query: 197 ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSA 256
           I +  +I   C     ++    F  MK +G+ P     NSL+ ++            T A
Sbjct: 152 IVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFL-------KLNRTEA 204

Query: 257 ALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV 316
           A  L+ E         +     V ++  +IN LCK+  + KAK+    M++ G+ P++V 
Sbjct: 205 AWVLYAEMFR------LRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVT 258

Query: 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
           Y++++ GYC  GR++ A  +  +++ +   PD+ +Y +LI+   K  ++EEA  ++ EM+
Sbjct: 259 YNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMV 318

Query: 377 SMGVRPD------------NSCILEAAELFR-TLHNTKFELDLTVFNCLVDGLCKSWRLR 423
             G+RP             N   L+ A  ++  +        ++ +N L+  L    R  
Sbjct: 319 QKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTD 378

Query: 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLH- 482
            A  + K++   G  P+ +TY ++I G C     +KA+                  LLH 
Sbjct: 379 EAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAF------------------LLHD 420

Query: 483 KMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
           +M    +KP + T + L  +L+K     E  +L     S
Sbjct: 421 EMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITS 459


>gi|388513011|gb|AFK44567.1| unknown [Medicago truncatula]
          Length = 348

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/365 (30%), Positives = 188/365 (51%), Gaps = 30/365 (8%)

Query: 116 IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
           +G  P+ ++LN L+   C    +  AF+   +++   F  D V+ G LI GLC  G+   
Sbjct: 1   MGYHPNTITLNTLIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRA 60

Query: 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
           A  L  +    D +  V  N + Y ++I G+CKD  VN    L+ +M  +GI P+   Y+
Sbjct: 61  ALDLLQRV---DGKL-VQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYS 116

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           +LI  +      +DA       ++L  + +  N        PD  ++  +++  CKD  +
Sbjct: 117 ALISGFFVVGKLKDA-------IDLFNKIILEN------IKPDGYTFNILVDGFCKDRKM 163

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
            + K +F  M  +GIIPDVV Y+SL+DGY L+  ++ A+ +F ++   G  PD  SYN L
Sbjct: 164 KEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNIL 223

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPD----NSC---------ILEAAELFRTLHNTKF 402
           IN + KI+KV++A++L+ EM    + P+    NS          I  A +L   +H+   
Sbjct: 224 INGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGV 283

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
             ++  +N ++D L K+ ++  A  L  K    G +P++ TYT++I GLC  G ++ A +
Sbjct: 284 PPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKGGRLKDARN 343

Query: 463 LLPDM 467
           +  D+
Sbjct: 344 IFEDL 348



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 166/354 (46%), Gaps = 44/354 (12%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           PN I   ++I GLC  G +++  +    +   G + D   Y +LI   C         G 
Sbjct: 5   PNTITLNTLIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKV-------GE 57

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
           T AAL+L +  V+G      +   + + Y ++I  +CKD  V+ A +L+ +M S+GI P+
Sbjct: 58  TRAALDLLQR-VDGK-----LVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPN 111

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           VV YS+LI G+ ++G++ DA  LF  I  E   PD  ++N L++ + K  K++E  +++ 
Sbjct: 112 VVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFA 171

Query: 374 EMISMGVRPD----NSCI---------LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
            M+  G+ PD    NS +           A  +F T+       D+  +N L++G CK  
Sbjct: 172 MMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIK 231

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE----------- 469
           ++  A  LF ++      PNVVTY  +I GL   G I  A  L+  M +           
Sbjct: 232 KVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYN 291

Query: 470 -------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                  K  +  KAI L+ K   + ++P   T +IL + L K     +  N+ 
Sbjct: 292 SIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKGGRLKDARNIF 345



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 132/271 (48%), Gaps = 17/271 (6%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            +NDA   ++ M+    +P + ++++L+          + I L  ++    + PD  + N
Sbjct: 92  HVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFN 151

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           IL++ FCK   + +       ++++   PDVVT   L+ G  +  +   A  +F      
Sbjct: 152 ILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTM--- 208

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             +  V P++  Y  +I+G CK   V+K   LF +M  + I P+   YNSLI       +
Sbjct: 209 -AQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLI-------D 260

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G  S AL+L ++      + GV   P++L+Y SII++L K   VDKA  L    K
Sbjct: 261 GLSKSGRISYALQLVDQM----HDRGV--PPNILTYNSIIDALFKTHQVDKAIALITKFK 314

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
            +GI P +  Y+ LIDG C  GR+ DAR +F
Sbjct: 315 DQGIQPSMYTYTILIDGLCKGGRLKDARNIF 345



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 133/298 (44%), Gaps = 52/298 (17%)

Query: 226 GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSI 285
           G +P+    N+LI+  C        KG    A   H++ V     LG   H D +SY ++
Sbjct: 2   GYHPNTITLNTLIKGLCL-------KGQIHQAFLFHDKLV----ALGF--HLDQVSYGTL 48

Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
           I+ LCK      A +L   +  + +  + V+Y+++I G C    ++DA  L+  + S+G 
Sbjct: 49  IHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGI 108

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELD 405
            P+  +Y+ LI+ +  + K+++A+ L+ ++I   ++PD                      
Sbjct: 109 SPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYT------------------- 149

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
              FN LVDG CK  +++    +F  + + G  P+VVTY  ++ G          Y L  
Sbjct: 150 ---FNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDG----------YRL-- 194

Query: 466 DMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
                ++E   A  + + MA+  V PD  + +IL     K +   + MNL      +N
Sbjct: 195 -----VKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKN 247



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 4/156 (2%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E+N A   FN M      P + S+N L+      K     + L   ++   ++P+ V+ N
Sbjct: 197 EVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYN 256

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++   K   +S A   + ++  +   P+++T   +I  L    +  +A  L TKF   
Sbjct: 257 SLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKF--- 313

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
                + P++  Y  +IDGLCK G +   R +F D+
Sbjct: 314 -KDQGIQPSMYTYTILIDGLCKGGRLKDARNIFEDL 348


>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
          Length = 703

 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 130/518 (25%), Positives = 244/518 (47%), Gaps = 71/518 (13%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L+ A+  F+ +   Q  P   ++++L+  LA +    + + L + +   G+ PD V  N
Sbjct: 173 DLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYN 232

Query: 127 ILMN-CFCKMIGVSDAFVALGRILRKVFS-----PDVVTLGCLIRGLCMQGKFTEASGLF 180
            L+  CF      +  F  + R+  K+       P++ T   ++ GLC  G+F E   ++
Sbjct: 233 ALLGGCF-----KAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVW 287

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            + VA     N+ P+VI Y  +I GLC+ G V+    ++ ++   G+  DA +YNSL++ 
Sbjct: 288 ERMVA----NNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKG 343

Query: 241 YCCAVN-------WEDAKGNTSAALELHEEFVNGNGELGVI---------------CHPD 278
           +C A         W+ A       L  +   + G  + G++               C PD
Sbjct: 344 FCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPD 403

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
            +++ ++I+ LC++   +KA  +F + +  G   DV  YSS+I+G C +GR+ DA K++ 
Sbjct: 404 TVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYE 463

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC--- 386
            ++ +GC P++  YN LI+ + ++ +  +A+ +Y +M   G  P         D  C   
Sbjct: 464 KMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAE 523

Query: 387 -ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
              EA+ + R +    F  D+T +  L+ GL    ++  A  ++K++   G + +V+ + 
Sbjct: 524 KYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHN 583

Query: 446 VMICGLCIEGGIEKAYDLLPDMEEKIRECL--------------------KAIELLHKMA 485
           ++I GLC  G +++A  +  DM+EK + C                     KA  L   + 
Sbjct: 584 ILIHGLCSAGKVDEALHVFSDMKEK-KNCPPNLVTYNTLMDGLYETGYIDKAATLWTSIT 642

Query: 486 KRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
           +  ++PD I+ +   + L   +  HE + LL   LSR 
Sbjct: 643 EDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRG 680



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 158/339 (46%), Gaps = 35/339 (10%)

Query: 137 GVSDAFVALGRILRKVFS--PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
           G+ D  + L  +L K  +  PD VT G LI GLC  G   +A   FT F         + 
Sbjct: 382 GMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKA---FTIFEEARVSGKQL- 437

Query: 195 NVICYASIIDGLCKDG-FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           +V  Y+S+I+GLC  G  V+ V+V +  M   G  P++ +YN+LI  +C           
Sbjct: 438 DVFSYSSMINGLCNVGRLVDAVKV-YEKMDKDGCKPNSHIYNALISGFCQVYR------- 489

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
           TS A+ ++ +  + NG     C P V++Y ++I+ LCK     +A  +  +M   G  PD
Sbjct: 490 TSDAVRIYSKMAD-NG-----CSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPD 543

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           +  Y SLI G     +IDDA  ++  I  +G   D   +N LI+      KV+EAL ++ 
Sbjct: 544 ITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFS 603

Query: 374 EMISMGVRPDN--------------SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
           +M      P N                I +AA L+ ++     E D+  +N  + GLC  
Sbjct: 604 DMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSC 663

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
            R+    +L  ++   G  P V+T+ +++  +   G I+
Sbjct: 664 DRIHEGIQLLDEVLSRGIIPTVITWNILVRAVIKYGPIQ 702



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 120/534 (22%), Positives = 213/534 (39%), Gaps = 83/534 (15%)

Query: 65  EVELNDALCFFNYMIHMQPT--PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF 122
           E +   AL     ++  +P   P  P    LL  LA      +  CL   L  +   P F
Sbjct: 23  EPDATAALAHLELLVSTRPAFPPPQPLLFHLLRRLATSSPS-HLPCLLNLLPRLRHRPRF 81

Query: 123 V--SLNILMNCFCKMI---GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
              +  ++++ F + I      DAF AL  IL    +P + +   L+       +F++A 
Sbjct: 82  SESAALVVLSAFSRAIMPDAALDAFRALPSILG--CNPGIRSHNALLDAFVRARRFSDAD 139

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
             F           + PN+  Y  ++  LC  G +++   LF  ++ R + PD   Y++L
Sbjct: 140 AFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTL 199

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH--------------------- 276
           +    C +  +D       AL+L +E      +  V+C+                     
Sbjct: 200 M----CGLAKQD---RLDHALDLLDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWD 252

Query: 277 ---------PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
                    P++ +Y  +++ LCK     +  E++  M +  + PDV+ Y  LI G C  
Sbjct: 253 KLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRS 312

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP----- 382
           G +D A +++  I   G + D + YN+L+  + +  +V+EA   +      G+R      
Sbjct: 313 GDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYN 372

Query: 383 -------DNSCILEAAELFRTLHNTKFEL-DLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
                  D+  + EA EL+  L      + D   F  L+ GLC++     A+ +F++   
Sbjct: 373 IMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARV 432

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLK 476
            G + +V +Y+ MI GLC  G +  A  +   M++                  ++     
Sbjct: 433 SGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSD 492

Query: 477 AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           A+ +  KMA     P  IT + L + L K E   E      S ++R   E+  T
Sbjct: 493 AVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEA-----SSVAREMVENGFT 541



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 134/299 (44%), Gaps = 18/299 (6%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P   +F +L+  L    +      + E     G   D  S + ++N  C +  + DA   
Sbjct: 402 PDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKV 461

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
             ++ +    P+      LI G C   + ++A  +++K     C P VI     Y ++ID
Sbjct: 462 YEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVI----TYNTLID 517

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           GLCK     +   +  +M   G  PD   Y SLIR        +DA       L + ++ 
Sbjct: 518 GLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDA-------LSIWKQI 570

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK-SRGIIPDVVVYSSLIDG 323
           +    ++      DV+ +  +I+ LC    VD+A  +F DMK  +   P++V Y++L+DG
Sbjct: 571 LYKGLKV------DVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDG 624

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
               G ID A  L+ SI  +G  PD  SYNT I      +++ E + L  E++S G+ P
Sbjct: 625 LYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIP 683



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 131/278 (47%), Gaps = 16/278 (5%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           S++S++  L      V+ + + E+++  G  P+    N L++ FC++   SDA     ++
Sbjct: 441 SYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKM 500

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
                SP V+T   LI GLC   K+ EAS +  + V         P++  Y S+I GL  
Sbjct: 501 ADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMV----ENGFTPDITTYGSLIRGLFS 556

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           D  ++    ++  +  +G+  D  ++N LI   C A       G    AL +  +     
Sbjct: 557 DKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSA-------GKVDEALHVFSDMKEKK 609

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                 C P++++Y ++++ L +   +DKA  L+  +   G+ PD++ Y++ I G C   
Sbjct: 610 N-----CPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCD 664

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           RI +  +L   + S G IP   ++N L+ +  K   ++
Sbjct: 665 RIHEGIQLLDEVLSRGIIPTVITWNILVRAVIKYGPIQ 702


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/438 (26%), Positives = 198/438 (45%), Gaps = 48/438 (10%)

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           +LNI+++ +CK +   +    +  + ++   PDVVT   ++      G    A  L    
Sbjct: 161 TLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMALIDSM 220

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
           V+      + P ++ Y S++ GL ++G  +K R +F  M   G+ PD   +N LI  +C 
Sbjct: 221 VS----KGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCR 276

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
           A       G    AL  ++E        G    PDV+S+  +I    +   +D A E   
Sbjct: 277 A-------GELEEALRFYKEM------RGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLR 323

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
           +M+  G++PD V+Y+ +I G+C  G + +A ++   + + GC+PD  +YNTL+N   K  
Sbjct: 324 EMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKER 383

Query: 364 KVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFN 410
           ++ +A  L  EM   GV PD             +  I +A + F T+ + +   D+  +N
Sbjct: 384 RLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYN 443

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            L+DG+C+   L  A EL+  +      PN VTY+++I   C +G ++ A+  L +M  K
Sbjct: 444 TLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNK 503

Query: 471 ------------------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHEC 512
                                  K  + L KM    V PD IT + L     K+   HE 
Sbjct: 504 GIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEA 563

Query: 513 MNLLPSFLSRNQEESKLT 530
            NLL    + N +   +T
Sbjct: 564 FNLLKIMENENVQPDAVT 581



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 118/457 (25%), Positives = 206/457 (45%), Gaps = 67/457 (14%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           ++G+VE   A+   + M+     P + ++NS+L  L     +     +   ++  G+ PD
Sbjct: 206 RAGDVEA--AMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPD 263

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR---------------- 165
             S N+L+  FC+   + +A      +  +  +PDVV+  CLI                 
Sbjct: 264 VRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLR 323

Query: 166 -------------------GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGL 206
                              G C  G   EA  +  + VAF C    +P+V+ Y ++++GL
Sbjct: 324 EMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGC----LPDVVTYNTLLNGL 379

Query: 207 CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266
           CK+  ++    L  +MK RG+ PD   + +LI  YC         GN   AL+  +   +
Sbjct: 380 CKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYC-------RDGNIEKALQFFDTISD 432

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
                     PD+++Y ++I+ +C+   + KA EL+ DM SR I P+ V YS LID +C 
Sbjct: 433 QR------LRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCE 486

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--- 383
            G++D+A      + ++G +P+  +YN++I  Y +   V +      +M    V PD   
Sbjct: 487 KGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLIT 546

Query: 384 -NSCIL---------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
            N+ I          EA  L + + N   + D   +N ++ G      ++ A  ++KK+ 
Sbjct: 547 YNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMG 606

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
             G EP+  TY  MI G  + G  +K++ L  +M +K
Sbjct: 607 ARGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQK 643



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 152/346 (43%), Gaps = 55/346 (15%)

Query: 77  YMIHMQPTPFMPS---FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
           Y+  M+    MP    +  ++G        +  + + + +   G LPD V+ N L+N  C
Sbjct: 321 YLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLC 380

Query: 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
           K   +SDA   L  +  +   PD+ T   LI G C  G   +A   F        RP+++
Sbjct: 381 KERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIV 440

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
                Y ++IDG+C+ G + K   L+ DM  R I+P+   Y+ LI  +C        KG 
Sbjct: 441 ----TYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHC-------EKGQ 489

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
              A    +E VN     G++  P++++Y SII   C+   V K ++    M+   ++PD
Sbjct: 490 VDNAFAFLDEMVNK----GIV--PNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPD 543

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA----- 368
           ++ Y++LI GY   G++ +A  L   +E+E   PD  +YN +I+ +S    ++EA     
Sbjct: 544 LITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYK 603

Query: 369 ------------------------------LSLYGEMISMGVRPDN 384
                                           L+ EM+  G+ PD+
Sbjct: 604 KMGARGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQKGLAPDD 649


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 115/418 (27%), Positives = 192/418 (45%), Gaps = 47/418 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G++P   + N +++ F K+      +V    + R      V T   +I  LC +GK  +A
Sbjct: 196 GVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKA 255

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
                 F+       V PNV+ Y ++I G C  G V   R++   MK RG+ PD++ Y S
Sbjct: 256 K----DFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGS 311

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI   C     E+A G            +    E+G++  P  ++Y ++I+  C    + 
Sbjct: 312 LISGMCKGGKLEEASG-----------ILEKMKEIGLL--PTAVTYNTLIDGYCNKGDLV 358

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           KA     +M  R I+P V  Y+ LI    L G++D+A  +   +   G +PD+ +YN LI
Sbjct: 359 KAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILI 418

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRP-------------DNSCILEAAELFRTLHNTKFE 403
           N Y +    ++A +L+ EMIS G++P               + +  A +LF  +      
Sbjct: 419 NGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGAS 478

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            DL +FN L+DG C +  L  A+ L K++ +    P+ VTY  ++ G C EG +E+A   
Sbjct: 479 PDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEAR-- 536

Query: 464 LPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
                          ELL +M +R ++PD I+ + L    +K  + ++   +    LS
Sbjct: 537 ---------------ELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLS 579



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/341 (29%), Positives = 164/341 (48%), Gaps = 39/341 (11%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           E++  IGLLP  V+ N L++ +C    +  AF     ++R+   P V T   LI  L ++
Sbjct: 330 EKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLE 389

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           GK  EA G+            ++P+ I Y  +I+G C+ G   K   L  +M  +GI P 
Sbjct: 390 GKMDEADGMIKDM----GDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPT 445

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
              Y SLI V          +    AA +L E+ +           PD++ + ++I+  C
Sbjct: 446 LVTYTSLIYVLS-------KRNRMKAADDLFEKIIREGAS------PDLIMFNALIDGHC 492

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
            +  +D+A  L  +M  R I+PD V Y++L+ G C  G++++AR+L   ++  G  PD  
Sbjct: 493 ANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHI 552

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFN 410
           SYNTLI+ YSK   + +A ++  EM+S+G  P                       L  +N
Sbjct: 553 SYNTLISGYSKRGDINDAFTIRDEMLSIGFNP----------------------TLLTYN 590

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
            L+ GLCK+ +   A EL K++   G  P+  TY  +I G+
Sbjct: 591 ALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSLIEGI 631



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 128/477 (26%), Positives = 201/477 (42%), Gaps = 97/477 (20%)

Query: 74  FFNYMIHMQPTPFMPSFNSLLGAL--AGK-KYYVNFICLSERLNTIGLLPDFVSLNILMN 130
            +  M  ++    + +FN ++  L   GK K   +FI   E L   G+ P+ V+ N +++
Sbjct: 223 LYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENL---GVKPNVVTYNTVIH 279

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
            +C    V  A + L  +  +   PD  T G LI G+C  GK  EASG+  K        
Sbjct: 280 GYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEI---- 335

Query: 191 NVIPNVICYASIIDGLCKDGFVNK-----------------------VRVLFL------- 220
            ++P  + Y ++IDG C  G + K                       +  LFL       
Sbjct: 336 GLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEA 395

Query: 221 -----DMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
                DM   GI PD+  YN LI  YC         GN   A  LH+E ++         
Sbjct: 396 DGMIKDMGDSGIVPDSITYNILINGYCRC-------GNAKKAFNLHDEMISKG------I 442

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
            P +++Y S+I  L K   +  A +LF  +   G  PD++++++LIDG+C  G +D A  
Sbjct: 443 QPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFA 502

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395
           L   ++    +PD  +YNTL+    +  KVEEA  L  EM   G+RPD+           
Sbjct: 503 LLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDH----------- 551

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
                        +N L+ G  K   +  A+ +  ++   G  P ++TY  +I GLC   
Sbjct: 552 -----------ISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLC--- 597

Query: 456 GIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHEC 512
                         K ++   A ELL +M  + + PD+ T   L E + K ++  E 
Sbjct: 598 --------------KNQQGDLAEELLKEMVSKGITPDDSTYFSLIEGIGKVDDSSEA 640



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 142/302 (47%), Gaps = 17/302 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L  A  + + M+     P + ++N L+ AL  +        + + +   G++PD ++ N
Sbjct: 356 DLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYN 415

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           IL+N +C+      AF     ++ K   P +VT   LI  L  + +   A  LF K +  
Sbjct: 416 ILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKII-- 473

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             R    P++I + ++IDG C +G +++   L  +M  R I PD   YN+L++  C    
Sbjct: 474 --REGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRC---- 527

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
               +G    A EL +E             PD +SY ++I+   K   ++ A  +  +M 
Sbjct: 528 ---REGKVEEARELLKEMKRRG------IRPDHISYNTLISGYSKRGDINDAFTIRDEML 578

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           S G  P ++ Y++LI G C   + D A +L   + S+G  PD S+Y +LI    K++   
Sbjct: 579 SIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSLIEGIGKVDDSS 638

Query: 367 EA 368
           EA
Sbjct: 639 EA 640



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 136/309 (44%), Gaps = 52/309 (16%)

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
           MK +G+ P    +N+++ ++            T     L+ E         +     V +
Sbjct: 192 MKEKGVVPKIETFNAMLSLFL-------KLNQTETVWVLYAEMFR------LKIKSTVYT 238

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           +  +IN LCK+  + KAK+    M++ G+ P+VV Y+++I GYC  GR++ AR +   ++
Sbjct: 239 FNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMK 298

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK 401
           + G  PD+ +Y +LI+   K  K+EEA  +  +M  +G+ P                   
Sbjct: 299 NRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLP------------------- 339

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
                  +N L+DG C    L  A+    ++ R    P V TY ++I  L +EG +++A 
Sbjct: 340 ---TAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEAD 396

Query: 462 DLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
            ++ DM +                   + PD IT +IL     +  N  +  NL    +S
Sbjct: 397 GMIKDMGDS-----------------GIVPDSITYNILINGYCRCGNAKKAFNLHDEMIS 439

Query: 522 RNQEESKLT 530
           +  + + +T
Sbjct: 440 KGIQPTLVT 448



 Score = 40.0 bits (92), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 38/80 (47%)

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
           +A E F  +        +  FN ++    K  +  + W L+ ++ R   +  V T+ +MI
Sbjct: 184 DAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMI 243

Query: 449 CGLCIEGGIEKAYDLLPDME 468
             LC EG ++KA D +  ME
Sbjct: 244 NVLCKEGKLKKAKDFIGSME 263


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 130/421 (30%), Positives = 195/421 (46%), Gaps = 54/421 (12%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+  + N ++N +CK+  V +A +   +I++    PD  T   LI G C       A  +
Sbjct: 192 PNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEV 251

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F       C+ N +     Y ++I GLC+ G +N+   LF DM      P        +R
Sbjct: 252 FLIMPQKGCQRNEVS----YTNLIHGLCEAGRINEALKLFADMTEDNCCPT-------VR 300

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            Y   +      G    AL L  E      E G  C P+V +Y  +I+ LCK+  +D+A+
Sbjct: 301 TYTVLIYALSGSGRKVEALNLFNEM----KEKG--CEPNVHTYTVLIDGLCKENKMDEAR 354

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           ++  +M  +G+IP VV Y++LIDGYC  G IDDA ++   +ES  C P+T +YN LI   
Sbjct: 355 KMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGL 414

Query: 360 SKIEKVEEALSLYGEMISMGVRPD----NSCI--------LEAA-ELFRTLHNTKFELDL 406
            K  KV +A++L  +M+   + P     NS I        LE+A  L   ++      D 
Sbjct: 415 CKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQ 474

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             ++  +D LCK  R+  A  LF  +   G + N V YT +I G C  G I+ AY LL  
Sbjct: 475 WTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLER 534

Query: 467 M---------------------EEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505
           M                     E+K++E   A  L+ KM    VKP  +T +IL   + K
Sbjct: 535 MLNDACLPNSYTYNVLIEGLCKEKKMKE---ASSLVAKMLTMGVKPTVVTYTILIGEMLK 591

Query: 506 D 506
           D
Sbjct: 592 D 592



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 119/413 (28%), Positives = 194/413 (46%), Gaps = 30/413 (7%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +N+AL  F  M      P + ++  L+ AL+G    V  + L   +   G  P+  +  +
Sbjct: 280 INEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTV 339

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++  CK   + +A   L  +  K   P VVT   LI G C +G   +A  +     +  
Sbjct: 340 LIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNS 399

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C     PN   Y  +I GLCK   V+K   L   M  R + P    YNSLI   C   + 
Sbjct: 400 CG----PNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDL 455

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           E A    S         +N NG +     PD  +Y   I++LCK+  V++A  LF  +K+
Sbjct: 456 ESAYRLLS--------LMNENGLV-----PDQWTYSVFIDTLCKEGRVEEAGTLFDSVKA 502

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           +G+  + V+Y++LIDGYC +G+ID A  L   + ++ C+P++ +YN LI    K +K++E
Sbjct: 503 KGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKE 562

Query: 368 ALSLYGEMISMGVRP-------------DNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           A SL  +M++MGV+P              +     A ++F  + +  ++ D+  +   + 
Sbjct: 563 ASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLH 622

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
                  L    ++  K+   G  P++VTYTV+I G    G   +A+D L  M
Sbjct: 623 AYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCM 675



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 114/434 (26%), Positives = 190/434 (43%), Gaps = 57/434 (13%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           +++ Q +P + +FN+++         V     + ++   GL PD  +   L+   C+  G
Sbjct: 185 LLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKG 244

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI---- 193
           V +A+     + +K    + V+   LI GLC  G+  EA  LF      +C P V     
Sbjct: 245 VDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTV 304

Query: 194 ---------------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
                                      PNV  Y  +IDGLCK+  +++ R +  +M  +G
Sbjct: 305 LIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKG 364

Query: 227 IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII 286
           + P    YN+LI  YC        +G    A E+  + +  N      C P+  +Y  +I
Sbjct: 365 LIPSVVTYNALIDGYC-------KEGMIDDAFEIL-DLMESNS-----CGPNTRTYNELI 411

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
             LCK   V KA  L   M  R + P ++ Y+SLI G C +  ++ A +L   +   G +
Sbjct: 412 CGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLV 471

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC----ILEAAEL 393
           PD  +Y+  I++  K  +VEEA +L+  + + GV+          D  C    I  A  L
Sbjct: 472 PDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSL 531

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
              + N     +   +N L++GLCK  +++ A  L  K+   G +P VVTYT++I  +  
Sbjct: 532 LERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLK 591

Query: 454 EGGIEKAYDLLPDM 467
           +G  + A  +   M
Sbjct: 592 DGAFDHALKVFNHM 605



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 100/410 (24%), Positives = 177/410 (43%), Gaps = 24/410 (5%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++DA    + M      P   ++N L+  L  K+     + L  ++    L P  ++ N 
Sbjct: 385 IDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNS 444

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++  CK+  +  A+  L  +      PD  T    I  LC +G+  EA  LF    A  
Sbjct: 445 LIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKA-- 502

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               V  N + Y ++IDG CK G ++    L   M      P+++ YN LI   C     
Sbjct: 503 --KGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKM 560

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           ++A    +  L +           GV   P V++Y  +I  + KD   D A ++F  M S
Sbjct: 561 KEASSLVAKMLTM-----------GV--KPTVVTYTILIGEMLKDGAFDHALKVFNHMVS 607

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            G  PDV  Y++ +  Y   G +++   +   +  EG +PD  +Y  LI+ Y+++     
Sbjct: 608 LGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHR 667

Query: 368 ALSLYGEMISMGVRPD---NSCILEAAELFRTLHNTKFELDL----TVFNCLVDGLCKSW 420
           A      M+  G +P     S +++       +  T+ E+ +     V +  +  + K+ 
Sbjct: 668 AFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNVNSVDIADVWKTL 727

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
               A +LF+K+  +G   +V  Y  +I G C +  +E+A  L+  M+E+
Sbjct: 728 EYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKER 777



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 171/394 (43%), Gaps = 109/394 (27%)

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKD---GFVNKVRVLFLDMKGRGIYPDAFVYNS 236
           F  ++A   RP    NV  Y+S+++ L +    G   K+R+                  S
Sbjct: 87  FFNWIAL--RPGFKHNVHSYSSMLNILIRARLLGVAEKIRI------------------S 126

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           +I+  CC++       +    LE+  + +N +GE      P +  Y +I+ SL K +L+D
Sbjct: 127 MIKS-CCSIE------DVLFVLEVFRK-MNADGEFKF--KPTLRCYNTILMSLSKFLLID 176

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR--------------------------- 329
           + K ++L++ +  I P++  ++++++GYC +G                            
Sbjct: 177 EMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLI 236

Query: 330 --------IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
                   +D+A ++F+ +  +GC  +  SY  LI+   +  ++ EAL L+ +M      
Sbjct: 237 LGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTE---- 292

Query: 382 PDNSC------------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLR 423
            DN C                   +EA  LF  +     E ++  +  L+DGLCK  ++ 
Sbjct: 293 -DNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMD 351

Query: 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE-------------- 469
            A ++  ++   G  P+VVTY  +I G C EG I+ A+++L  ME               
Sbjct: 352 EARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELI 411

Query: 470 ----KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
               K R+  KA+ LL+KM +R + P  IT + L
Sbjct: 412 CGLCKKRKVHKAMALLNKMLERKLSPSLITYNSL 445



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 120/493 (24%), Positives = 190/493 (38%), Gaps = 97/493 (19%)

Query: 49  EKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQ-PTPFMPSFNSLL------GALAGKK 101
           +K K+ K ++  +K  E +L+ +L  +N +IH Q     + S   LL      G +  + 
Sbjct: 416 KKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQW 475

Query: 102 YYVNFI---CLSERLNTIGLLPDFVS----------LNILMNCFCKMIGVSDAFVALGRI 148
            Y  FI   C   R+   G L D V              L++ +CK+  +  A+  L R+
Sbjct: 476 TYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERM 535

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
           L     P+  T   LI GLC + K  EAS L  K +       V P V+ Y  +I  + K
Sbjct: 536 LNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTM----GVKPTVVTYTILIGEMLK 591

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED-----AKGNTSAALE---L 260
           DG  +    +F  M   G  PD   Y + +  Y      E+     AK N    L     
Sbjct: 592 DGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVT 651

Query: 261 HEEFVNGNGELGVI--------------CHPDVLSYCSIINSLC---------------- 290
           +   ++G   LG+               C P +     +I +L                 
Sbjct: 652 YTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDS 711

Query: 291 -------------KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
                        K +  + A +LF  M   G   DV +Y +LI G+C   R+++A+ L 
Sbjct: 712 VSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLV 771

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397
             ++  G  P    YN+L++   K+    EA+ L   M+  G+ P    +LE+ +L    
Sbjct: 772 HHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLP----LLESYKL---- 823

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                         LV GL        A  +F  L   G   + V + V+I GL     +
Sbjct: 824 --------------LVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLV 869

Query: 458 EKAYDLLPDMEEK 470
           ++  +L+  MEEK
Sbjct: 870 DECSELIDIMEEK 882


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/396 (28%), Positives = 178/396 (44%), Gaps = 47/396 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+LP   + N L++ F K+     A+V    + R      V T   +I  LC +GK  +A
Sbjct: 181 GVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKA 240

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
                 FV       V PN++ Y +I+ G C  G V     +   MK + I PD+F Y S
Sbjct: 241 K----DFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGS 296

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI   C        +G    A ++ EE V           P  + Y ++I+  C    +D
Sbjct: 297 LISGMC-------KQGRLEEASKIFEEMVQKG------LRPSAVIYNTLIDGFCNKGNLD 343

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A     +M  +GI P +  Y+SLI    +  R D+A  +   I+ +G  PD  +YN LI
Sbjct: 344 MASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILI 403

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFE 403
           N Y +    ++A  L+ EM++ G++P                 + EA +LF+ + +    
Sbjct: 404 NGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVL 463

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D  +FN L+DG C +  ++ A+EL K + R    P+ VT+  ++ G C EG +E+A   
Sbjct: 464 PDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEAR-- 521

Query: 464 LPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                          EL  +M +R +KPD I+ + L
Sbjct: 522 ---------------ELFDEMKRRGIKPDHISFNTL 542



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 114/423 (26%), Positives = 199/423 (47%), Gaps = 58/423 (13%)

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           + NI++N  CK   +  A   +G +      P++VT   ++ G C  G+   A  + T  
Sbjct: 223 TFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTM 282

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
                R  + P+   Y S+I G+CK G + +   +F +M  +G+ P A +YN+LI  +C 
Sbjct: 283 K----RQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFC- 337

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                  KGN   A    +E +           P + +Y S+I++L  +   D+A+ +  
Sbjct: 338 ------NKGNLDMASAYKDEMLKKG------ISPTMSTYNSLIHALFMEQRTDEAECMIK 385

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV---SIESEGCIPDTSSYNTLINSYS 360
           +++ +GI PD + Y+ LI+GYC   R  +A+K F+    + + G  P   +Y +L++  S
Sbjct: 386 EIQEKGISPDAITYNILINGYC---RCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLS 442

Query: 361 KIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLT 407
           K  +++EA  L+ ++ S GV PD             NS +  A EL + +   K   D  
Sbjct: 443 KKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEV 502

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            FN ++ G C+  ++  A ELF ++ R G +P+ +++  +I G    G I+ A+ +  +M
Sbjct: 503 TFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEM 562

Query: 468 EE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNK---- 505
            +                  K +E   A ELL +M  + + PD+ T   L E + K    
Sbjct: 563 LDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKVNIP 622

Query: 506 DEN 508
           DEN
Sbjct: 623 DEN 625



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/390 (28%), Positives = 178/390 (45%), Gaps = 67/390 (17%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
            + T G+ P+ V+ N +++ +C    V  A   L  + R+   PD  T G LI G+C QG
Sbjct: 246 HMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQG 305

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC-----------KDGFVNK------ 214
           +  EAS +F + V    R    P+ + Y ++IDG C           KD  + K      
Sbjct: 306 RLEEASKIFEEMVQKGLR----PSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTM 361

Query: 215 ------VRVLFLDMKG------------RGIYPDAFVYNSLIRVYC-CAVNWEDAKGNTS 255
                 +  LF++ +             +GI PDA  YN LI  YC CA        N  
Sbjct: 362 STYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCA--------NAK 413

Query: 256 AALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV 315
            A  LH+E       L     P   +Y S+++ L K   + +A +LF  + S G++PD +
Sbjct: 414 KAFLLHDEM------LASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAI 467

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
           ++++LIDG+C    +  A +L   ++     PD  ++NT++  + +  KVEEA  L+ EM
Sbjct: 468 MFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEM 527

Query: 376 ISMGVRPDN-------------SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRL 422
              G++PD+               I +A  +   + +T F   +  +N LV GLCK+   
Sbjct: 528 KRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEG 587

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
             A EL K++   G  P+  TY  +I G+ 
Sbjct: 588 DLAEELLKEMVSKGMTPDDTTYFTLIEGIA 617



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 148/339 (43%), Gaps = 45/339 (13%)

Query: 197 ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSA 256
           I +  +I   C     ++    F  MK +G+ P     NSL+ ++            T A
Sbjct: 152 IVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFL-------KLNRTEA 204

Query: 257 ALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV 316
           A  L+ E         +     V ++  +IN LCK+  + KAK+    M++ G+ P++V 
Sbjct: 205 AWVLYAEMFR------LRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVT 258

Query: 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
           Y++++ GYC  GR++ A  +  +++ +   PD+ +Y +LI+   K  ++EEA  ++ EM+
Sbjct: 259 YNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMV 318

Query: 377 SMGVRPD------------NSCILEAAELFR-TLHNTKFELDLTVFNCLVDGLCKSWRLR 423
             G+RP             N   L+ A  ++  +        ++ +N L+  L    R  
Sbjct: 319 QKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTD 378

Query: 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLH- 482
            A  + K++   G  P+ +TY ++I G C     +KA+                  LLH 
Sbjct: 379 EAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAF------------------LLHD 420

Query: 483 KMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
           +M    +KP + T + L  +L+K     E  +L     S
Sbjct: 421 EMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITS 459


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 117/402 (29%), Positives = 190/402 (47%), Gaps = 41/402 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++  A+     M      P   +F +L+     +      + +  ++   G  P  V++N
Sbjct: 212 QVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVN 271

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +L+N +CKM  V DA   + + +   F PD VT    + GLC  G  + A     K +  
Sbjct: 272 VLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHA----LKVMDL 327

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             +    P+V  Y ++I+ L K+G +++ + +   M  RG  PD   +N+LI        
Sbjct: 328 MLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNR 387

Query: 247 WEDAKGNTSAALELHEEF-VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
            E+       AL+L  E  V G         PDV ++  +IN+LCK         LF +M
Sbjct: 388 LEE-------ALDLARELTVKG-------LSPDVYTFNILINALCKVGDPHLGIRLFEEM 433

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
           KS G  PD V Y+ LID  C MG++ +A  L   +ES GC   T +YNT+I++  K  ++
Sbjct: 434 KSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRI 493

Query: 366 EEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
           EEA  ++ +M + G+    S +                     FN L+DGLCK+ R+  A
Sbjct: 494 EEAEEVFDQMDAQGI--SRSAV--------------------TFNTLIDGLCKAKRIDDA 531

Query: 426 WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            EL +++ + G +PN +TY  ++   C +G I+KA D+L  M
Sbjct: 532 TELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETM 573



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 113/374 (30%), Positives = 169/374 (45%), Gaps = 41/374 (10%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           SK+GE  L++A    N M+     P   +FN+L+ AL+ +      + L+  L   GL P
Sbjct: 348 SKNGE--LDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSP 405

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFS----PDVVTLGCLIRGLCMQGKFTEA 176
           D  + NIL+N  CK   V D  + + R+  ++ S    PD VT   LI  LC  GK   A
Sbjct: 406 DVYTFNILINALCK---VGDPHLGI-RLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNA 461

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L  +  +  C P    + + Y +IID LCK   + +   +F  M  +GI   A  +N+
Sbjct: 462 LDLLNEMESNGC-PR---STVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNT 517

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI   C A   +DA        EL E+ V           P+ ++Y SI+   CK   + 
Sbjct: 518 LIDGLCKAKRIDDAT-------ELIEQMVKEG------LQPNNITYNSILTHYCKQGNIK 564

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           KA ++   M + G   DVV Y +LI+G C  GR   A KL   +  +G  P   +YN +I
Sbjct: 565 KAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVI 624

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD--------------NSCILEAAELFRTLHNTKF 402
            S  +   + +AL+L+ EM  +G  PD                 I EA +    + N  F
Sbjct: 625 QSLFRRNNLRDALNLFREMTEVGEPPDALTYKIVFRSLCRGGGPIKEAFDFLVEMVNKGF 684

Query: 403 ELDLTVFNCLVDGL 416
             + + F  L +GL
Sbjct: 685 MPEFSSFRMLAEGL 698



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 170/406 (41%), Gaps = 62/406 (15%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           LN+     DF   + +     + +G + AF  +  ++R++        G  +R + ++  
Sbjct: 76  LNSALAREDFAPSSAVYEEIVQKLGTAGAFDLMEGLVREMRRE-----GHQVRAVVVR-S 129

Query: 173 FTEASGLFTKFV-AFDCRPNVIPN--------VICYASIIDGLCKDGFVNKVRVLFLDMK 223
           F E+     +F  A D   N + N         + +  +++ L +   +  +  ++ +M 
Sbjct: 130 FVESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEMT 189

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDA----------------------------KGNTS 255
           GRGI PD    N+LI+  C A     A                            +G+  
Sbjct: 190 GRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIE 249

Query: 256 AALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV 315
           AAL +  + +         C P  ++   +IN  CK   V+ A        + G  PD V
Sbjct: 250 AALRVKAKMMEAG------CSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQV 303

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
            Y++ + G C  G +  A K+   +  EG  PD  +YNT+IN  SK  +++EA  +  +M
Sbjct: 304 TYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQM 363

Query: 376 ISMGVRPD----NSCIL---------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRL 422
           +  G  PD    N+ I+         EA +L R L       D+  FN L++ LCK    
Sbjct: 364 VDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDP 423

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
                LF+++   G  P+ VTY ++I  LC  G +  A DLL +ME
Sbjct: 424 HLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEME 469


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 138/485 (28%), Positives = 222/485 (45%), Gaps = 47/485 (9%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L  A   F  MI     P +  + +++  L  +  +   I +   +   GL PD    N
Sbjct: 457 DLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYN 516

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            ++  FCK   + +    L  ++ K   P+V T G  I G C  G+   A   F + +  
Sbjct: 517 TVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDS 576

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
              PN   +VIC   +IDG CKDG   K    F  M  +G+ PD   ++ LI        
Sbjct: 577 GIAPN---DVIC-TDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGK 632

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            ++A G  S  L+            G++  PDV +Y S+I++LCK+  +  A EL  DM 
Sbjct: 633 LQEAMGVFSELLDK-----------GLV--PDVFTYTSLISNLCKEGDLKAAFELHDDMC 679

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            +GI P++V Y++LI+G C +G I  AR+LF  I  +G   ++ +Y+T+I  Y K   + 
Sbjct: 680 KKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLT 739

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTV------------FNCLVD 414
           EA  L+  M  +GV PD+       +      NT+  L L +            FN L+D
Sbjct: 740 EAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTPAFNALID 799

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK--IR 472
           G  K  +L  A++L + +      PN VTYT++I   C  G I++A  L  +M+++  + 
Sbjct: 800 GFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMP 859

Query: 473 ECLKAIELLH----------------KMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
             L    LLH                +M  R +KPD++  S++ +   K+ N  + + L+
Sbjct: 860 NVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLV 919

Query: 517 PSFLS 521
              LS
Sbjct: 920 DDMLS 924



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/374 (28%), Positives = 185/374 (49%), Gaps = 32/374 (8%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L   +  +G+ PD  + N L+  + K+  +  A+  L  I ++  + +    G ++ GLC
Sbjct: 394 LFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLC 453

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDG-FVNKVRVLFLDMKGRGI 227
             G  T A+ LF + +++  +    PN++ Y +I+ GL K+G F   +++L + MK +G+
Sbjct: 454 HCGDLTRANELFQEMISWGLK----PNIVIYTTIVKGLVKEGRFEEAIKILGV-MKDQGL 508

Query: 228 YPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIIN 287
            PD F YN++I  +C A   E+ K        L E    G         P+V +Y + I+
Sbjct: 509 SPDVFCYNTVIIGFCKAGKMEEGKS------YLVEMIAKG-------LKPNVYTYGAFIH 555

Query: 288 SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
             C+   +  A+  F++M   GI P+ V+ + LIDGYC  G    A   F  +  +G +P
Sbjct: 556 GYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLP 615

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---------NSC----ILEAAELF 394
           D  +++ LI+  SK  K++EA+ ++ E++  G+ PD         N C    +  A EL 
Sbjct: 616 DVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELH 675

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
             +       ++  +N L++GLCK   +  A ELF  +P  G   N VTY+ +I G C  
Sbjct: 676 DDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKS 735

Query: 455 GGIEKAYDLLPDME 468
             + +A+ L   M+
Sbjct: 736 ANLTEAFQLFHGMK 749



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 104/408 (25%), Positives = 173/408 (42%), Gaps = 65/408 (15%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           + + T+GL PD V+   L+N F K   +  AF     +  +    +  T   LI GLC  
Sbjct: 326 DEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKI 385

Query: 171 GKFTEASGLFTKFVAFDCRP-------------------------------NVIPNVICY 199
           G   +A  LF++      +P                               N+  N    
Sbjct: 386 GDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMC 445

Query: 200 ASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE 259
            +I++GLC  G + +   LF +M   G+ P+  +Y ++++           +G    A++
Sbjct: 446 GAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLV-------KEGRFEEAIK 498

Query: 260 LHEEFVNGNGELGVI----CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV 315
           +          LGV+      PDV  Y ++I   CK   +++ K   ++M ++G+ P+V 
Sbjct: 499 I----------LGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVY 548

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
            Y + I GYC  G +  A + F+ +   G  P+      LI+ Y K     +A + +  M
Sbjct: 549 TYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCM 608

Query: 376 ISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRL 422
           +  GV PD             N  + EA  +F  L +     D+  +  L+  LCK   L
Sbjct: 609 LDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDL 668

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           ++A+EL   + + G  PN+VTY  +I GLC  G I KA +L   + EK
Sbjct: 669 KAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEK 716



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 120/478 (25%), Positives = 196/478 (41%), Gaps = 106/478 (22%)

Query: 86  FMPSFNSLLGALAGKKY-YVNFICLSERLNTI-------------GLLPDFVSLNILMNC 131
           F   +  +LGA+    Y Y N I    R+  +             G +P+ V+ ++++  
Sbjct: 217 FWKVYKGMLGAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAG 276

Query: 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
            C+   V +A      +  K   PD      LI G C Q + TE   +  +      +P+
Sbjct: 277 LCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPD 336

Query: 192 VIP-------------------------------NVICYASIIDGLCKDGFVNKVRVLFL 220
            +                                N   Y ++I GLCK G + K   LF 
Sbjct: 337 HVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFS 396

Query: 221 DMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVL 280
           +M   GI PD   YN LI  Y    N E A       +E+ +E +  N     +C     
Sbjct: 397 EMTMMGIKPDIQTYNCLIEGYYKVQNMEKA---YELLIEIKKENLTANA---YMCG---- 446

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
              +I+N LC    + +A ELF +M S G+ P++V+Y++++ G    GR ++A K+   +
Sbjct: 447 ---AIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVM 503

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------NSCIL 388
           + +G  PD   YNT+I  + K  K+EE  S   EMI+ G++P+             +  +
Sbjct: 504 KDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEM 563

Query: 389 EAAEL------------------------------------FRTLHNTKFELDLTVFNCL 412
           +AAE                                     FR + +     D+   + L
Sbjct: 564 QAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVL 623

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           + GL K+ +L+ A  +F +L   G  P+V TYT +I  LC EG ++ A++L  DM +K
Sbjct: 624 IHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKK 681



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 116/418 (27%), Positives = 202/418 (48%), Gaps = 68/418 (16%)

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR-PNV--IPNVI-CYASI--- 202
           R VFS ++ T   L   LC  G F  A+ +  + +  D R P+V  + ++I CY  I   
Sbjct: 100 RTVFSQNLSTFSILSLILCNSGLFGNAANVLERMI--DTRNPHVKILDSIIKCYKEINGS 157

Query: 203 ------------IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC-AVNWED 249
                       ID   K GF+N+   +FL     G   + F+    + + CC +++ + 
Sbjct: 158 SSSSSVVVFEILIDIYRKKGFLNEAVSVFL-----GAKTNEFI----VGLACCNSLSKDL 208

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
            KGN    +EL  +   G   LG I  PDV +Y ++IN+ C+   V++ K +  DM+ +G
Sbjct: 209 LKGNR---VELFWKVYKG--MLGAIV-PDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKG 262

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
            IP++V YS +I G C  G +D+A +L  S+ ++G +PD   Y TLI+ + + ++  E  
Sbjct: 263 CIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGK 322

Query: 370 SLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           S+  EM +MG++PD+             S I  A ++   +   K +L+   +  L+ GL
Sbjct: 323 SMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGL 382

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK------ 470
           CK   L  A +LF ++   G +P++ TY  +I G      +EKAY+LL +++++      
Sbjct: 383 CKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANA 442

Query: 471 ------------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                         +  +A EL  +M    +KP+ +  + + + L K+    E + +L
Sbjct: 443 YMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKIL 500



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 103/437 (23%), Positives = 184/437 (42%), Gaps = 48/437 (10%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
            ++PD  +   L+N +C++  V +    L  +  K   P++VT   +I GLC  G   EA
Sbjct: 227 AIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEA 286

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L            ++P+   YA++IDG C+     + + +  +M   G+ PD   Y +
Sbjct: 287 LELKRSMA----NKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTA 342

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI  +         + +   A ++ EE      +L      +  +Y ++I+ LCK   ++
Sbjct: 343 LINGFV-------KQSDIGGAFQVKEEMFARKIKL------NTFTYYALIHGLCKIGDLE 389

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           KA++LF +M   GI PD+  Y+ LI+GY  +  ++ A +L + I+ E    +      ++
Sbjct: 390 KAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIV 449

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFE 403
           N       +  A  L+ EMIS G++P+                  EA ++   + +    
Sbjct: 450 NGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLS 509

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D+  +N ++ G CK+ ++        ++   G +PNV TY   I G C  G ++ A   
Sbjct: 510 PDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERS 569

Query: 464 LPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505
             +M +                  K     KA      M  + V PD  T S+L   L+K
Sbjct: 570 FIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSK 629

Query: 506 DENCHECMNLLPSFLSR 522
           +    E M +    L +
Sbjct: 630 NGKLQEAMGVFSELLDK 646



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 114/454 (25%), Positives = 200/454 (44%), Gaps = 56/454 (12%)

Query: 71   ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
            A   F  M+     P + + + L+  L+        + +   L   GL+PD  +   L++
Sbjct: 601  AFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLIS 660

Query: 131  CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
              CK   +  AF     + +K  +P++VT   LI GLC  G+  +A  LF          
Sbjct: 661  NLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIP----EK 716

Query: 191  NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
             +  N + Y++II G CK   + +   LF  MK  G+ PD+FVY +LI   C A N E A
Sbjct: 717  GLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKA 776

Query: 251  KGNTSAALELHEE----------FVNGNGELGVICH--------------PDVLSYCSII 286
                S  L + EE           ++G  +LG +                P+ ++Y  +I
Sbjct: 777  ---LSLFLGMVEEGIASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILI 833

Query: 287  NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
               C    + +A++LF++M+ R ++P+V+ Y+SL+ GY  +GR  +   LF  + + G  
Sbjct: 834  EYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIK 893

Query: 347  PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406
            PD  +++ +++++ K     +AL L  +M+S GV   N C                    
Sbjct: 894  PDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGV---NVC-------------------K 931

Query: 407  TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             ++  L+D LCK   L    ++  ++ + G + ++ T   ++C     G  ++A  +L  
Sbjct: 932  NLYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEALRVLES 991

Query: 467  MEEKIRECLKAIELLHKMAKRYVKPDEITVSILE 500
            M   +R  L  +E   +   R     E+   ILE
Sbjct: 992  M---VRSFLNLLEFSVRNGNRGKSNGEMLSIILE 1022


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 126/441 (28%), Positives = 208/441 (47%), Gaps = 57/441 (12%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A+   N M+     P   ++NS+L            I   +++ + G+ PD V+ ++
Sbjct: 247 MDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSL 306

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           LM+  CK     +A      + ++   P++ T G L++G   +G   E  GL    V   
Sbjct: 307 LMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNG 366

Query: 188 CRPN-------------------------------VIPNVICYASIIDGLCKDGFVNKVR 216
             P+                               + PN + Y ++I  LCK G V    
Sbjct: 367 IHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAM 426

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
           + F  M   G+ P   VYNSLI   C    WE A+       EL  E ++       IC 
Sbjct: 427 LYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAE-------ELILEMLDRG-----IC- 473

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
            + + + SII+S CK+  V ++++LF  M   G+ P+V+ Y++LI+GYCL G++D+A KL
Sbjct: 474 LNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKL 533

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCILE---- 389
              + S G  P+T +Y+TLIN Y KI ++E+AL L+ EM S GV PD    + IL+    
Sbjct: 534 LSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQ 593

Query: 390 ------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                 A EL+  +  +  +++L+ +N ++ GLCK+     A ++F+ L     +    T
Sbjct: 594 TRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEART 653

Query: 444 YTVMICGLCIEGGIEKAYDLL 464
           + +MI  L   G  ++A DL 
Sbjct: 654 FNIMIDALLKVGRNDEAKDLF 674



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 121/471 (25%), Positives = 197/471 (41%), Gaps = 85/471 (18%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD  +  IL+ C C+   +   F ALG +++K F  D +    L++GLC   + ++A  +
Sbjct: 85  PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 144

Query: 180 -FTKFVAFDCRPNVI----------------------------------PNVICYASIID 204
              +     C PNV                                   P+V+ Y ++I+
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIN 204

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           G  K+G  +K    + +M  RGI PD   YNS+I   C A            A++   E 
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKA-----------QAMDKAMEV 253

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           +N   + GV+  PD ++Y SI++  C      +A      M+S G+ PDVV YS L+D  
Sbjct: 254 LNTMVKNGVM--PDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYL 311

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           C  GR  +ARK+F S+   G  P+ ++Y TL+  Y+    + E   L   M+  G+ PD+
Sbjct: 312 CKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDH 371

Query: 385 SC-------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
                          + +A  +F  +       +   +  ++  LCKS R+  A   F++
Sbjct: 372 YVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQ 431

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM---------------------EEK 470
           +   G  P  + Y  +I GLC     E+A +L+ +M                     E +
Sbjct: 432 MIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGR 491

Query: 471 IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
           + E  K  EL+ ++    VKP+ IT + L           E M LL   +S
Sbjct: 492 VIESEKLFELMVRIG---VKPNVITYNTLINGYCLAGKMDEAMKLLSGMVS 539



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 110/398 (27%), Positives = 182/398 (45%), Gaps = 51/398 (12%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+LPD V+ N ++   CK   +  A   L  +++    PD +T   ++ G C  G+  EA
Sbjct: 226 GILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEA 285

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
            G   K  +      V P+V+ Y+ ++D LCK+G   + R +F  M  RG+ P+   Y +
Sbjct: 286 IGFLKKMRS----DGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGT 341

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHE--EFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294
           L++ Y         KG   A +E+H   + +  NG      HPD   +  +I +      
Sbjct: 342 LLQGYA-------TKG---ALVEMHGLLDLMVRNG-----IHPDHYVFSILICAYANQGK 386

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           VD+A  +F  M+ +G+ P+ V Y ++I   C  GR++DA   F  +  EG  P    YN+
Sbjct: 387 VDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNS 446

Query: 355 LINSYSKIEKVEEALSLYGEMISMGV---------RPDNSC----ILEAAELFRTLHNTK 401
           LI+      K E A  L  EM+  G+           D+ C    ++E+ +LF  +    
Sbjct: 447 LIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIG 506

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
            + ++  +N L++G C + ++  A +L   +   G +PN VTY+ +I G C         
Sbjct: 507 VKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYC--------- 557

Query: 462 DLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                   KI     A+ L  +M    V PD IT +I+
Sbjct: 558 --------KISRMEDALVLFKEMESSGVSPDIITYNII 587



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 152/336 (45%), Gaps = 38/336 (11%)

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP-----NVICYASIIDGLCK 208
           +PD+ T G LI   C  G+           + F    NVI      + I +  ++ GLC 
Sbjct: 84  TPDLCTYGILIGCCCRAGRLD---------LGFAALGNVIKKGFRVDAIAFTPLLKGLCA 134

Query: 209 DGFV-NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
           D    + + ++   M   G  P+ F YN L++  C        +  +  ALEL     + 
Sbjct: 135 DKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLC-------DENRSQEALELLHMMAD- 186

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
             + G    PDV+SY ++IN   K+   DKA   + +M  RGI+PDVV Y+S+I   C  
Sbjct: 187 --DRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKA 244

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---- 383
             +D A ++  ++   G +PD  +YN++++ Y    + +EA+    +M S GV PD    
Sbjct: 245 QAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTY 304

Query: 384 ---------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
                    N   +EA ++F ++     + ++T +  L+ G      L     L   + R
Sbjct: 305 SLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVR 364

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            G  P+   ++++IC    +G +++A  +   M ++
Sbjct: 365 NGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQ 400



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 157/332 (47%), Gaps = 25/332 (7%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           KSG VE  DA+ +F  MI    +P    +NSL+  L     +     L   +   G+  +
Sbjct: 418 KSGRVE--DAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLN 475

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            +  N +++  CK   V ++      ++R    P+V+T   LI G C+ GK  EA  L +
Sbjct: 476 TIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLS 535

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
             V+   +PN +     Y+++I+G CK   +    VLF +M+  G+ PD   YN +++  
Sbjct: 536 GMVSVGLKPNTVT----YSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGL 591

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
                ++  +  T+AA EL+        ++      ++ +Y  I++ LCK+ L D A ++
Sbjct: 592 -----FQTRR--TAAAKELYVRITESGTQI------ELSTYNIILHGLCKNKLTDDALQM 638

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F ++    +  +   ++ +ID    +GR D+A+ LFV+  S G +P+  +Y  +  +   
Sbjct: 639 FQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIG 698

Query: 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAEL 393
              +EE   L+  M       DN C +++  L
Sbjct: 699 QGLLEELDQLFLSM------EDNGCTVDSGML 724



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 101/249 (40%), Gaps = 35/249 (14%)

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
           + PD+  Y  LI   C  GR+D       ++  +G   D  ++  L+      ++  +A+
Sbjct: 83  VTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 142

Query: 370 SL-YGEMISMGVRP-------------DNSCILEAAELFRTLHNTKFEL---DLTVFNCL 412
            +    M  +G  P             D +   EA EL   + + +      D+  +  +
Sbjct: 143 DIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTV 202

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-- 470
           ++G  K      A+  + ++   G  P+VVTY  +I  LC    ++KA ++L  M +   
Sbjct: 203 INGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGV 262

Query: 471 IRECL----------------KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMN 514
           + +C+                +AI  L KM    V+PD +T S+L + L K+  C E   
Sbjct: 263 MPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARK 322

Query: 515 LLPSFLSRN 523
           +  S   R 
Sbjct: 323 IFDSMTKRG 331


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 126/441 (28%), Positives = 207/441 (46%), Gaps = 57/441 (12%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A+   N M+     P   ++NS+L            I   +++ + G+ PD V+ ++
Sbjct: 247 MDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSL 306

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           LM+  CK     +A      + ++   P++ T G L++G   +G   E  GL    V   
Sbjct: 307 LMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNG 366

Query: 188 CRPN-------------------------------VIPNVICYASIIDGLCKDGFVNKVR 216
             P+                               + PN + Y ++I  LCK G V    
Sbjct: 367 IHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAM 426

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
           + F  M   G+ P   VYNSLI   C    WE A+       EL  E ++       IC 
Sbjct: 427 LYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAE-------ELILEMLDRG-----ICL 474

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
             +  + SII+S CK+  V ++++LF  M   G+ P+V+ Y++LI+GYCL G++D+A KL
Sbjct: 475 NTIF-FNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKL 533

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCILE---- 389
              + S G  P+T +Y+TLIN Y KI ++E+AL L+ EM S GV PD    + IL+    
Sbjct: 534 LSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQ 593

Query: 390 ------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                 A EL+  +  +  +++L+ +N ++ GLCK+     A ++F+ L     +    T
Sbjct: 594 TRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEART 653

Query: 444 YTVMICGLCIEGGIEKAYDLL 464
           + +MI  L   G  ++A DL 
Sbjct: 654 FNIMIDALLKVGRNDEAKDLF 674



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 121/471 (25%), Positives = 197/471 (41%), Gaps = 85/471 (18%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD  +  IL+ C C+   +   F ALG +++K F  D +    L++GLC   + ++A  +
Sbjct: 85  PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 144

Query: 180 -FTKFVAFDCRPNVI----------------------------------PNVICYASIID 204
              +     C PNV                                   P+V+ Y ++I+
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIN 204

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           G  K+G  +K    + +M  RGI PD   YNS+I   C A            A++   E 
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKA-----------QAMDKAMEV 253

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           +N   + GV+  PD ++Y SI++  C      +A      M+S G+ PDVV YS L+D  
Sbjct: 254 LNTMVKNGVM--PDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYL 311

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           C  GR  +ARK+F S+   G  P+ ++Y TL+  Y+    + E   L   M+  G+ PD+
Sbjct: 312 CKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDH 371

Query: 385 SC-------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
                          + +A  +F  +       +   +  ++  LCKS R+  A   F++
Sbjct: 372 YVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQ 431

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM---------------------EEK 470
           +   G  P  + Y  +I GLC     E+A +L+ +M                     E +
Sbjct: 432 MIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGR 491

Query: 471 IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
           + E  K  EL+ ++    VKP+ IT + L           E M LL   +S
Sbjct: 492 VIESEKLFELMVRIG---VKPNVITYNTLINGYCLAGKMDEAMKLLSGMVS 539



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/398 (27%), Positives = 183/398 (45%), Gaps = 51/398 (12%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+LPD V+ N ++   CK   +  A   L  +++    PD +T   ++ G C  G+  EA
Sbjct: 226 GILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEA 285

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
            G   K  +      V P+V+ Y+ ++D LCK+G   + R +F  M  RG+ P+   Y +
Sbjct: 286 IGFLKKMRS----DGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGT 341

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHE--EFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294
           L++ Y         KG   A +E+H   + +  NG      HPD   +  +I +  K   
Sbjct: 342 LLQGYA-------TKG---ALVEMHGLLDLMVRNG-----IHPDHYVFSILICAYAKQGK 386

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           VD+A  +F  M+ +G+ P+ V Y ++I   C  GR++DA   F  +  EG  P    YN+
Sbjct: 387 VDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNS 446

Query: 355 LINSYSKIEKVEEALSLYGEMISMGV---------RPDNSC----ILEAAELFRTLHNTK 401
           LI+      K E A  L  EM+  G+           D+ C    ++E+ +LF  +    
Sbjct: 447 LIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIG 506

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
            + ++  +N L++G C + ++  A +L   +   G +PN VTY+ +I G C         
Sbjct: 507 VKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYC--------- 557

Query: 462 DLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                   KI     A+ L  +M    V PD IT +I+
Sbjct: 558 --------KISRMEDALVLFKEMESSGVSPDIITYNII 587



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 152/336 (45%), Gaps = 38/336 (11%)

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP-----NVICYASIIDGLCK 208
           +PD+ T G LI   C  G+           + F    NVI      + I +  ++ GLC 
Sbjct: 84  TPDLCTYGILIGCCCRAGRLD---------LGFAALGNVIKKGFRVDAIAFTPLLKGLCA 134

Query: 209 DGFV-NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
           D    + + ++   M   G  P+ F YN L++  C        +  +  ALEL     + 
Sbjct: 135 DKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLC-------DENRSQEALELLHMMAD- 186

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
             + G    PDV+SY ++IN   K+   DKA   + +M  RGI+PDVV Y+S+I   C  
Sbjct: 187 --DRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKA 244

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---- 383
             +D A ++  ++   G +PD  +YN++++ Y    + +EA+    +M S GV PD    
Sbjct: 245 QAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTY 304

Query: 384 ---------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
                    N   +EA ++F ++     + ++T +  L+ G      L     L   + R
Sbjct: 305 SLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVR 364

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            G  P+   ++++IC    +G +++A  +   M ++
Sbjct: 365 NGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQ 400



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 157/332 (47%), Gaps = 25/332 (7%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           KSG VE  DA+ +F  MI    +P    +NSL+  L     +     L   +   G+  +
Sbjct: 418 KSGRVE--DAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLN 475

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            +  N +++  CK   V ++      ++R    P+V+T   LI G C+ GK  EA  L +
Sbjct: 476 TIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLS 535

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
             V+   +PN +     Y+++I+G CK   +    VLF +M+  G+ PD   YN +++  
Sbjct: 536 GMVSVGLKPNTVT----YSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGL 591

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
                ++  +  T+AA EL+        ++      ++ +Y  I++ LCK+ L D A ++
Sbjct: 592 -----FQTRR--TAAAKELYVRITESGTQI------ELSTYNIILHGLCKNKLTDDALQM 638

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F ++    +  +   ++ +ID    +GR D+A+ LFV+  S G +P+  +Y  +  +   
Sbjct: 639 FQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIG 698

Query: 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAEL 393
              +EE   L+  M       DN C +++  L
Sbjct: 699 QGLLEELDQLFLSM------EDNGCTVDSGML 724



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 101/249 (40%), Gaps = 35/249 (14%)

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
           + PD+  Y  LI   C  GR+D       ++  +G   D  ++  L+      ++  +A+
Sbjct: 83  VTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 142

Query: 370 SL-YGEMISMGVRP-------------DNSCILEAAELFRTLHNTKFEL---DLTVFNCL 412
            +    M  +G  P             D +   EA EL   + + +      D+  +  +
Sbjct: 143 DIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTV 202

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-- 470
           ++G  K      A+  + ++   G  P+VVTY  +I  LC    ++KA ++L  M +   
Sbjct: 203 INGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGV 262

Query: 471 IRECL----------------KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMN 514
           + +C+                +AI  L KM    V+PD +T S+L + L K+  C E   
Sbjct: 263 MPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARK 322

Query: 515 LLPSFLSRN 523
           +  S   R 
Sbjct: 323 IFDSMTKRG 331


>gi|356561399|ref|XP_003548969.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12300, mitochondrial-like [Glycine max]
          Length = 422

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 123/415 (29%), Positives = 197/415 (47%), Gaps = 68/415 (16%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++DA+  FN M+ M+ TP +  FN +LG+    KYY   I LS+++   G+ P+ V+LNI
Sbjct: 35  VDDAVSQFNRMLLMRHTPPIIKFNKILGSPVKMKYYPAAISLSKQMEVKGIEPNLVTLNI 94

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+NCFC +  ++ +F  LG+IL+  + P+ +TL  LI+GLC++ +  ++     K VA  
Sbjct: 95  LINCFCHLGHMAFSFSVLGKILKLGYQPNTLTLTTLIKGLCLKDEVRKSLHFHDKLVAQG 154

Query: 188 CRPN-------------------------------VIPNVICYASIIDGLCKDGFVNKVR 216
            + N                                I NV+ Y +IIDGLCKD  VN+  
Sbjct: 155 FQINHVSCGTLLNGLCKIGEMRGAMKLLRVIEDRSTITNVVMYNTIIDGLCKDKLVNEAY 214

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            L+ +M  RG +P+   Y++LI  +C A       G    A  L +E +  N +      
Sbjct: 215 DLYSEMDVRGNFPNVITYHTLICGFCLA-------GQLMEAFGLLKEMILKNID------ 261

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PDV +Y  ++++LCK+     A +L  ++  R    DVV Y+SL+DG C    +D A  L
Sbjct: 262 PDVYTYNILMDALCKEG-KSYALDLIDEIHRRRQPADVVTYTSLLDGXCKNXYLDKAIAL 320

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
           F  ++     P+  +++ L                       G R  N     A E F+ 
Sbjct: 321 FKKMKERRIQPNVYTHSXLTGCVK------------------GGRLKN-----AQEFFQH 357

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
           L    + +D+  +  ++ GLCK   L  A  +  K+   G  PN VT+ ++IC L
Sbjct: 358 LLVKGYCIDVWTYTVMISGLCKEGMLDEALAMKXKMEDNGCIPNAVTFEIIICSL 412



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 128/267 (47%), Gaps = 31/267 (11%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P ++ +  I+ S  K      A  L   M+ +GI P++V  + LI+ +C +G +  +  +
Sbjct: 52  PPIIKFNKILGSPVKMKYYPAAISLSKQMEVKGIEPNLVTLNILINCFCHLGHMAFSFSV 111

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN-SC--------- 386
              I   G  P+T +  TLI      ++V ++L  + ++++ G + ++ SC         
Sbjct: 112 LGKILKLGYQPNTLTLTTLIKGLCLKDEVRKSLHFHDKLVAQGFQINHVSCGTLLNGLCK 171

Query: 387 ---ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
              +  A +L R + +     ++ ++N ++DGLCK   +  A++L+ ++   G  PNV+T
Sbjct: 172 IGEMRGAMKLLRVIEDRSTITNVVMYNTIIDGLCKDKLVNEAYDLYSEMDVRGNFPNVIT 231

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELL 503
           Y  +ICG C+ G + +A+ LL +M       LK I+           PD  T +IL + L
Sbjct: 232 YHTLICGFCLAGQLMEAFGLLKEM------ILKNID-----------PDVYTYNILMDAL 274

Query: 504 NKDENCHECMNLLPSFLSRNQEESKLT 530
            K+   +  ++L+     R Q    +T
Sbjct: 275 CKEGKSY-ALDLIDEIHRRRQPADVVT 300


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/451 (27%), Positives = 204/451 (45%), Gaps = 69/451 (15%)

Query: 68  LNDALCFFNYMIHMQPT--PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
           L+++L  F++ +   P   P   S N+L+  L   K+Y + I +  ++ ++ + P F SL
Sbjct: 38  LSESLSHFHHTLQDYPNSIPSYSSCNTLIDNLRKAKHYDHVISVHSKMASVSVFPCFTSL 97

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG-------------- 171
           + L+  F      S AF  LG I+++ F  +V     L++G C  G              
Sbjct: 98  SALIESFVNTQKPSFAFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKR 157

Query: 172 ---------------------KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDG 210
                                +  EA  LF +    +C+    PN + ++++IDG CK+G
Sbjct: 158 NCLIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGECK----PNSVTFSALIDGFCKNG 213

Query: 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGE 270
            V +   L  +M+  G+  D FVY++LI  +C       +KG+     EL  E +  N  
Sbjct: 214 DVEEGFGLLEEMEKMGLEGDVFVYSALISGFC-------SKGDIERGKELFNEMLRKN-- 264

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
                 P+V++Y  ++N+LCK     +A ++   M    + PDVV Y+ L DG    GR 
Sbjct: 265 ----VTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRA 320

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC---- 386
            DA K+   +   G  P+  +YN +IN   K  +V++AL +   M   G +PD       
Sbjct: 321 SDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTL 380

Query: 387 ---------ILEAAELFRTLHNTKFEL--DLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
                    I EA +L   L + +F +  D+  FN ++  LCK  RLR A  ++  +   
Sbjct: 381 VKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVER 440

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
           G   N+VTY ++I G    G + KA +L  D
Sbjct: 441 GFPSNIVTYNILIDGYLSAGKLTKALELWKD 471



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 109/422 (25%), Positives = 193/422 (45%), Gaps = 34/422 (8%)

Query: 64  GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV 123
           G++E    L  FN M+    TP + +++ L+ AL  K+ +     + + +    + PD V
Sbjct: 248 GDIERGKEL--FNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVV 305

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           +  +L +   K    SDA   L  ++++   P+ VT   +I GLC +G+  +A G+    
Sbjct: 306 AYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETM 365

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNK-VRVLFLDM-KGRGIYPDAFVYNSLIRVY 241
                +    P+V+ Y++++ GLC  G +++ V +L L M K   I PD F +N +I+  
Sbjct: 366 ----AKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQEL 421

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C       AK        ++   V    E G     ++++Y  +I+       + KA EL
Sbjct: 422 CKQRRLRHAK-------RVYYTMV----ERGF--PSNIVTYNILIDGYLSAGKLTKALEL 468

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           + D    GI P+   Y+ LI+G C M  +  A+ LF    + G  P  S YNTL+ S  +
Sbjct: 469 WKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCR 528

Query: 362 IEKVEEALSLYGEMISMGVRPD------------NSCILEAAELFRTLHNTKFEL-DLTV 408
              VE+A +L+ EM +    PD             +  +E+A+           + D   
Sbjct: 529 ESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNIT 588

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           F+ L++   K  +L  A  L++++   G  P+ V +  ++ G  ++G  EK   +L  M 
Sbjct: 589 FSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLKGKTEKVVSMLQQMA 648

Query: 469 EK 470
           +K
Sbjct: 649 DK 650



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 152/326 (46%), Gaps = 58/326 (17%)

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
           VL L MK RG + + + +N L++ +C         G++  A++L              C 
Sbjct: 116 VLGLIMK-RGFHLNVYNFNLLLKGFC-------QSGDSHKAMDL-------------FCM 154

Query: 277 -------PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
                  PD +SY ++IN LCK   + +AKELF +MK     P+ V +S+LIDG+C  G 
Sbjct: 155 MKRNCLIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGD 214

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSC 386
           +++   L   +E  G   D   Y+ LI+ +     +E    L+ EM+   V P+    SC
Sbjct: 215 VEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSC 274

Query: 387 IL----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
           ++          EAA++  T+   K   D+  +  L DGL K+ R   A ++   + + G
Sbjct: 275 LMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRG 334

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITV 496
            EPN VTY  +I GLC EG ++                  A+ +L  MAK+  KPD +T 
Sbjct: 335 EEPNNVTYNAIINGLCKEGRVD-----------------DALGILETMAKKGKKPDVVTY 377

Query: 497 SILEELLNKDENCHECMNLLPSFLSR 522
           S L + L       E ++LL   +S+
Sbjct: 378 STLVKGLCGVGKIDEAVDLLNLLMSK 403


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 192/396 (48%), Gaps = 47/396 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G++P   + N +++ F K+  +  A+V    + R   S  V T   ++  LC +GK  +A
Sbjct: 209 GIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKA 268

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
                +F+ F       PNV+ Y +II G    G +   R +   M+ +GI PD++ Y S
Sbjct: 269 R----EFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGS 324

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI   C     E+A G       L ++ V    E+G++  P+ ++Y ++I+  C    ++
Sbjct: 325 LISGMCKEGRLEEASG-------LFDKMV----EIGLV--PNAVTYNTLIDGYCNKGDLE 371

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A     +M  +GI+P V  Y+ L+    + GR+ +A  +   +  +G IPD  +YN LI
Sbjct: 372 RAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILI 431

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFE 403
           N YS+    ++A  L+ EM+S G+ P +               + EA +LF  + +    
Sbjct: 432 NGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVS 491

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D+ +FN +VDG C +  +  A+ L K++ R    P+ VT+  ++ G C EG +E+A  L
Sbjct: 492 PDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARML 551

Query: 464 LPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           L +M+                 +R +KPD I+ + L
Sbjct: 552 LDEMK-----------------RRGIKPDHISYNTL 570



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 125/475 (26%), Positives = 208/475 (43%), Gaps = 98/475 (20%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGAL--AGK-KYYVNFICLSERLNTIGLLPDFVSLNI 127
           A   +  M  ++ +  + +FN ++  L   GK K    FI   E L   G  P+ VS N 
Sbjct: 233 AWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGL---GFKPNVVSYNT 289

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           +++ +     +  A   L  +  K   PD  T G LI G+C +G+  EASGLF K V   
Sbjct: 290 IIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEI- 348

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNK-----------------------VRVLFL---- 220
               ++PN + Y ++IDG C  G + +                       V  LF+    
Sbjct: 349 ---GLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRM 405

Query: 221 --------DMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
                   +M+ +GI PDA  YN LI  Y          GN   A +LH E ++   E  
Sbjct: 406 GEADDMIKEMRKKGIIPDAITYNILINGYSRC-------GNAKKAFDLHNEMLSKGIE-- 456

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
               P  ++Y S+I  L +   + +A +LF  +  +G+ PDV+++++++DG+C  G ++ 
Sbjct: 457 ----PTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVER 512

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392
           A  L   ++ +   PD  ++NTL+    +  KVEEA  L  EM   G++PD+        
Sbjct: 513 AFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDH-------- 564

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
                           +N L+ G  +   ++ A+ +  ++   G  P ++TY  +I  LC
Sbjct: 565 --------------ISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLC 610

Query: 453 IEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEIT-VSILEELLNKD 506
                            K +E   A ELL +M  + + PD+ T +S++E + N D
Sbjct: 611 -----------------KNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNVD 648



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 138/301 (45%), Gaps = 17/301 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L  A  + + M+     P + ++N L+ AL  +        + + +   G++PD ++ N
Sbjct: 369 DLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYN 428

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           IL+N + +      AF     +L K   P  VT   LI  L  + +  EA  LF K +  
Sbjct: 429 ILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILD- 487

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                V P+VI + +++DG C +G V +  +L  +M  + + PD   +N+L++  C    
Sbjct: 488 ---QGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGK 544

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            E+A+      + L E    G         PD +SY ++I+   +   +  A  +  +M 
Sbjct: 545 VEEAR------MLLDEMKRRG-------IKPDHISYNTLISGYGRRGDIKDAFRVRDEML 591

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           S G  P ++ Y++LI   C     D A +L   + ++G  PD S+Y +LI     ++ + 
Sbjct: 592 SIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNVDTLV 651

Query: 367 E 367
           E
Sbjct: 652 E 652



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 120/294 (40%), Gaps = 75/294 (25%)

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDV--------------------VVYSS---------- 319
           C+    D+A + F  MK +GI+P +                    V+Y+           
Sbjct: 190 CELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTV 249

Query: 320 -----LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
                +++  C  G++  AR+    +E  G  P+  SYNT+I+ YS    +E A  +   
Sbjct: 250 YTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDA 309

Query: 375 MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
           M   G+ PD+                        +  L+ G+CK  RL  A  LF K+  
Sbjct: 310 MRVKGIEPDS----------------------YTYGSLISGMCKEGRLEEASGLFDKMVE 347

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-----------IRECL-------K 476
            G  PN VTY  +I G C +G +E+A+    +M +K           +   L       +
Sbjct: 348 IGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGE 407

Query: 477 AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           A +++ +M K+ + PD IT +IL    ++  N  +  +L    LS+  E + +T
Sbjct: 408 ADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVT 461


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/446 (26%), Positives = 202/446 (45%), Gaps = 53/446 (11%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+ A   F+ M+     P   ++++L+  L  +      + + E +   G+ P   +  I
Sbjct: 253 LDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTI 312

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
            +   C     S+A   LG++ ++   P++ T   LI GL   GKF  A GL+ K +A  
Sbjct: 313 PLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLA-- 370

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               ++P  + Y ++I+ LC +G       +F  M   G  P    YN +I+ +C   + 
Sbjct: 371 --DGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDI 428

Query: 248 EDA----------------------------KGNTSAALELHEEFVNGNGELGVICHPDV 279
           + A                            +GN + A+ L  E + GNG       PD 
Sbjct: 429 QKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRL-LEIMKGNG-----LKPDA 482

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
            +Y  +I+   +   ++ A  LF  M   GI P+ V Y+++IDGY  + ++DDA  LF  
Sbjct: 483 WTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWK 542

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSC 386
           +   G +P + +YN +I+ +SK   + EA +  G+M+  G+ P+             N  
Sbjct: 543 MVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGR 602

Query: 387 ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA--WELFKKLPRYGPEPNVVTY 444
              A ++F  +    +  +L  ++ L+ GLC+  R   A  + L  +L  YG EPNV TY
Sbjct: 603 TGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTY 662

Query: 445 TVMICGLCIEGGIEKAYDLLPDMEEK 470
           T ++ GLC EG   +A  L+  M++K
Sbjct: 663 TTLVKGLCGEGRCYEADQLVVSMQKK 688



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 118/487 (24%), Positives = 206/487 (42%), Gaps = 69/487 (14%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           S+ G+ E+  A+  ++ M+     P   ++N+L+  L  +  +     + + + + G LP
Sbjct: 353 SRDGKFEI--AIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLP 410

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
              + N ++ CFC M  +  A V   ++L+   SP+V+T   LI G C QG    A  L 
Sbjct: 411 STQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLL 470

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
                   +P+       Y  +I G  + G +     LF  M   GI P+   Y ++I  
Sbjct: 471 EIMKGNGLKPDAWT----YTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDG 526

Query: 241 Y--------CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH--------------PD 278
           Y          A+ W+  +     + + +   ++G  +   I                P+
Sbjct: 527 YFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPN 586

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR--KL 336
           V++Y S I+ LC++     A ++F +M+ R   P++  YSSLI G C  GR +DA    L
Sbjct: 587 VITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNL 646

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
              +   GC P+  +Y TL+       +  EA  L   M   G++P       + E++R 
Sbjct: 647 LARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQP-------SEEIYRA 699

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           L               + G CK+ ++ SA  +F  +   G + ++  Y  +IC LC E  
Sbjct: 700 L---------------LIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENF 744

Query: 457 IEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           IE+A            +C     +   M +++   DE+  ++L + L K+     C+ LL
Sbjct: 745 IEEA------------QC-----IFQTMLEKHWNSDEVVWTVLLDGLLKEGETDLCLKLL 787

Query: 517 PSFLSRN 523
               SRN
Sbjct: 788 HVMESRN 794



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 162/353 (45%), Gaps = 39/353 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ P  ++ N ++N  CK   V +A + +  I R    P+  T   LI G C       A
Sbjct: 197 GIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLA 256

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             +F + V   C PN +     Y+++I+GLC +G + +   +  +M  +GI P  + Y  
Sbjct: 257 FAMFDRMVKDGCDPNSVT----YSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTI 312

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
            +   C A       G +S A+EL  +           C P++ ++ ++I+ L +D   +
Sbjct: 313 PLVSLCDA-------GCSSEAVELLGKMKKRG------CVPNIQTFTALISGLSRDGKFE 359

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A  L+  M + G++P  V Y++LI+  C+ GR + A  +F  + S G +P T +YN +I
Sbjct: 360 IAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEII 419

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
             +  +  +++A+ ++ +M+  G  P                      ++  +N L+ G 
Sbjct: 420 KCFCLMGDIQKAMVIFDKMLKAGSSP----------------------NVITYNTLIYGY 457

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           CK   L +A  L + +   G +P+  TYT +I G    G +E A  L   M E
Sbjct: 458 CKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMME 510



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 123/271 (45%), Gaps = 31/271 (11%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P +L++ ++IN LCK   V +AK +   +      P+   Y+SLI G+C    +D A  +
Sbjct: 200 PSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAM 259

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP-------------D 383
           F  +  +GC P++ +Y+TLIN      ++EEA+ +  EM+  G+ P             D
Sbjct: 260 FDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCD 319

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
             C  EA EL   +       ++  F  L+ GL +  +   A  L+ K+   G  P  VT
Sbjct: 320 AGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVT 379

Query: 444 YTVMICGLCIEGGIEKAYDL---------LPDME--EKIRECL-------KAIELLHKMA 485
           Y  +I  LC+EG  E A+ +         LP  +   +I +C        KA+ +  KM 
Sbjct: 380 YNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKML 439

Query: 486 KRYVKPDEITVSILEELLNKDENCHECMNLL 516
           K    P+ IT + L     K  N +  M LL
Sbjct: 440 KAGSSPNVITYNTLIYGYCKQGNLNNAMRLL 470



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 133/300 (44%), Gaps = 19/300 (6%)

Query: 66  VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
            +++DAL  F  M+     P   ++N ++   +             ++   GLLP+ ++ 
Sbjct: 531 AKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITY 590

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS--GLFTKF 183
              ++  C+      AF     + ++ + P++ T   LI GLC +G+  +A    L  + 
Sbjct: 591 TSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARL 650

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
             + C PNV      Y +++ GLC +G   +   L + M+ +G+ P   +Y +L+   C 
Sbjct: 651 THYGCEPNVDT----YTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECK 706

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
            +  E A  N   +++           LG   H  +  Y ++I +LCK+  +++A+ +F 
Sbjct: 707 NLKVESAL-NIFYSMD----------TLGFQLH--LSDYKALICALCKENFIEEAQCIFQ 753

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            M  +    D VV++ L+DG    G  D   KL   +ES  C  +  +Y  L    S ++
Sbjct: 754 TMLEKHWNSDEVVWTVLLDGLLKEGETDLCLKLLHVMESRNCTLNFQTYVMLARELSALD 813


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 130/421 (30%), Positives = 195/421 (46%), Gaps = 54/421 (12%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+  + N ++N +CK+  V +A +   +I++    PD  T   LI G C       A  +
Sbjct: 192 PNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEV 251

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F       C+ N +     Y ++I GLC+ G +N+   LF DM      P        +R
Sbjct: 252 FLIMPQKGCQRNEVS----YTNLIHGLCEAGRINEALKLFADMTEDNCCPT-------VR 300

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            Y   +      G    AL L  E      E G  C P+V +Y  +I+ LCK+  +D+A+
Sbjct: 301 TYTVLIYALSGSGRKVEALNLFNEM----KEKG--CEPNVHTYTVLIDGLCKENKMDEAR 354

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           ++  +M  +G+IP VV Y++LIDGYC  G IDDA ++   +ES  C P+T +YN LI   
Sbjct: 355 KMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGL 414

Query: 360 SKIEKVEEALSLYGEMISMGVRPD----NSCI--------LEAA-ELFRTLHNTKFELDL 406
            K  KV +A++L  +M+   + P     NS I        LE+A  L   ++      D 
Sbjct: 415 CKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQ 474

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             ++  +D LCK  R+  A  LF  +   G + N V YT +I G C  G I+ AY LL  
Sbjct: 475 WTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLER 534

Query: 467 M---------------------EEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505
           M                     E+K++E   A  L+ KM    VKP  +T +IL   + K
Sbjct: 535 MLNDACLPNSYTYNVLIEGLCKEKKMKE---ASSLVAKMLTMGVKPTVVTYTILIGEMLK 591

Query: 506 D 506
           D
Sbjct: 592 D 592



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 119/413 (28%), Positives = 194/413 (46%), Gaps = 30/413 (7%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +N+AL  F  M      P + ++  L+ AL+G    V  + L   +   G  P+  +  +
Sbjct: 280 INEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTV 339

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++  CK   + +A   L  +  K   P VVT   LI G C +G   +A  +     +  
Sbjct: 340 LIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNS 399

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C PN       Y  +I GLCK   V+K   L   M  R + P    YNSLI   C   + 
Sbjct: 400 CGPNTRT----YNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDL 455

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           E A    S         +N NG +     PD  +Y   I++LCK+  V++A  LF  +K+
Sbjct: 456 ESAYRLLS--------LMNENGLV-----PDQWTYSVFIDTLCKEGRVEEAGTLFDSVKA 502

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           +G+  + V+Y++LIDGYC +G+ID A  L   + ++ C+P++ +YN LI    K +K++E
Sbjct: 503 KGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKE 562

Query: 368 ALSLYGEMISMGVRP-------------DNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           A SL  +M++MGV+P              +     A ++F  + +  ++ D+  +   + 
Sbjct: 563 ASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLH 622

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
                  L    ++  K+   G  P++VTYTV+I G    G   +A+D L  M
Sbjct: 623 AYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCM 675



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 114/434 (26%), Positives = 190/434 (43%), Gaps = 57/434 (13%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           +++ Q +P + +FN+++         V     + ++   GL PD  +   L+   C+  G
Sbjct: 185 LLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKG 244

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI---- 193
           V +A+     + +K    + V+   LI GLC  G+  EA  LF      +C P V     
Sbjct: 245 VDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTV 304

Query: 194 ---------------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
                                      PNV  Y  +IDGLCK+  +++ R +  +M  +G
Sbjct: 305 LIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKG 364

Query: 227 IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII 286
           + P    YN+LI  YC        +G    A E+  + +  N      C P+  +Y  +I
Sbjct: 365 LIPSVVTYNALIDGYC-------KEGMIDDAFEIL-DLMESNS-----CGPNTRTYNELI 411

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
             LCK   V KA  L   M  R + P ++ Y+SLI G C +  ++ A +L   +   G +
Sbjct: 412 CGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLV 471

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC----ILEAAEL 393
           PD  +Y+  I++  K  +VEEA +L+  + + GV+          D  C    I  A  L
Sbjct: 472 PDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSL 531

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
              + N     +   +N L++GLCK  +++ A  L  K+   G +P VVTYT++I  +  
Sbjct: 532 LERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLK 591

Query: 454 EGGIEKAYDLLPDM 467
           +G  + A  +   M
Sbjct: 592 DGAFDHALKVFNHM 605



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/406 (24%), Positives = 174/406 (42%), Gaps = 27/406 (6%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++DA    + M      P   ++N L+  L  K+     + L  ++    L P  ++ N 
Sbjct: 385 IDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNS 444

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++  CK+  +  A+  L  +      PD  T    I  LC +G+  EA  LF    A  
Sbjct: 445 LIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKA-- 502

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               V  N + Y ++IDG CK G ++    L   M      P+++ YN LI   C     
Sbjct: 503 --KGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKM 560

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           ++A    +  L +           GV   P V++Y  +I  + KD   D A ++F  M S
Sbjct: 561 KEASSLVAKMLTM-----------GV--KPTVVTYTILIGEMLKDGAFDHALKVFNHMVS 607

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            G  PDV  Y++ +  Y   G +++   +   +  EG +PD  +Y  LI+ Y+++     
Sbjct: 608 LGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHR 667

Query: 368 ALSLYGEMISMGVRPD---NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
           A      M+  G +P     S +++       +  T+ E+        +D +  +     
Sbjct: 668 AFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIG-------IDSVSNTLEYEI 720

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           A +LF+K+  +G   +V  Y  +I G C +  +E+A  L+  M+E+
Sbjct: 721 ALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKER 766



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 171/394 (43%), Gaps = 109/394 (27%)

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKD---GFVNKVRVLFLDMKGRGIYPDAFVYNS 236
           F  ++A   RP    NV  Y+S+++ L +    G   K+R+                  S
Sbjct: 87  FFNWIAL--RPGFKHNVHSYSSMLNILIRARLLGVAEKIRI------------------S 126

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           +I+  CC++       +    LE+  + +N +GE      P +  Y +I+ SL K +L+D
Sbjct: 127 MIKS-CCSIE------DVLFVLEVFRK-MNADGEFKF--KPTLRCYNTILMSLSKFLLID 176

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR--------------------------- 329
           + K ++L++ +  I P++  ++++++GYC +G                            
Sbjct: 177 EMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLI 236

Query: 330 --------IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
                   +D+A ++F+ +  +GC  +  SY  LI+   +  ++ EAL L+ +M      
Sbjct: 237 LGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTE---- 292

Query: 382 PDNSC------------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLR 423
            DN C                   +EA  LF  +     E ++  +  L+DGLCK  ++ 
Sbjct: 293 -DNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMD 351

Query: 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE-------------- 469
            A ++  ++   G  P+VVTY  +I G C EG I+ A+++L  ME               
Sbjct: 352 EARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELI 411

Query: 470 ----KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
               K R+  KA+ LL+KM +R + P  IT + L
Sbjct: 412 CGLCKKRKVHKAMALLNKMLERKLSPSLITYNSL 445



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 93/401 (23%), Positives = 163/401 (40%), Gaps = 45/401 (11%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G++++  A      M++    P   ++N L+  L  +K       L  ++ T+G+ P 
Sbjct: 521 KVGKIDV--AYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPT 578

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+  IL+    K      A      ++   + PDV T    +     QG   E   +  
Sbjct: 579 VVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIA 638

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           K         ++P+++ Y  +IDG  + G  ++       M   G  P  ++ + LI+  
Sbjct: 639 KM----NEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNL 694

Query: 242 CCAVNWE--------DAKGNT---SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
                 +        D+  NT     AL+L E+ V         C  DV  Y ++I   C
Sbjct: 695 SHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHG------CTIDVSIYGALIAGFC 748

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           +   +++A+ L   MK RG+ P   +Y+SL+D  C +G   +A +L  ++   G +P   
Sbjct: 749 QQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLE 808

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFN 410
           SY  L+              LY       +   N    +A  +F  L +  +  D   + 
Sbjct: 809 SYKLLV------------CGLY-------IEGSNE---KAKAVFHGLLSCGYNYDEVAWK 846

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
            L+DGL K   +    EL   +   G +PN +TY+++I GL
Sbjct: 847 VLIDGLLKRDLVDECSELIDIMEEKGCQPNPLTYSLLIEGL 887



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 136/312 (43%), Gaps = 35/312 (11%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
            + AL  FN+M+ +   P + ++ + L A   +        +  ++N  G+LPD V+  +
Sbjct: 595 FDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTV 654

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE------------ 175
           L++ + ++     AF  L  ++     P +  +  LI+ L  + +  E            
Sbjct: 655 LIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSN 714

Query: 176 ------ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYP 229
                 A  LF K V   C      +V  Y ++I G C+   + + + L   MK RG+ P
Sbjct: 715 TLEYEIALKLFEKMVEHGC----TIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSP 770

Query: 230 DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSL 289
              +YNSL+   CC +      G  + A+ L +  V  NG L     P + SY  ++  L
Sbjct: 771 SEDIYNSLLDC-CCKL------GVYAEAVRLVDAMVE-NGLL-----PLLESYKLLVCGL 817

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
             +   +KAK +F  + S G   D V +  LIDG      +D+  +L   +E +GC P+ 
Sbjct: 818 YIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNP 877

Query: 350 SSYNTLINSYSK 361
            +Y+ LI    +
Sbjct: 878 LTYSLLIEGLER 889


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/446 (26%), Positives = 202/446 (45%), Gaps = 53/446 (11%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+ A   F+ M+     P   ++++L+  L  +      + + E +   G+ P   +  I
Sbjct: 253 LDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTI 312

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
            +   C     S+A   LG++ ++   P++ T   LI GL   GKF  A GL+ K +A  
Sbjct: 313 PLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLA-- 370

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               ++P  + Y ++I+ LC +G       +F  M   G  P    YN +I+ +C   + 
Sbjct: 371 --DGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDI 428

Query: 248 EDA----------------------------KGNTSAALELHEEFVNGNGELGVICHPDV 279
           + A                            +GN + A+ L  E + GNG       PD 
Sbjct: 429 QKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRL-LEIMKGNG-----LKPDA 482

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
            +Y  +I+   +   ++ A  LF  M   GI P+ V Y+++IDGY  + ++DDA  LF  
Sbjct: 483 WTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWK 542

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSC 386
           +   G +P + +YN +I+ +SK   + EA +  G+M+  G+ P+             N  
Sbjct: 543 MVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGR 602

Query: 387 ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA--WELFKKLPRYGPEPNVVTY 444
              A ++F  +    +  +L  ++ L+ GLC+  R   A  + L  +L  YG EPNV TY
Sbjct: 603 TGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTY 662

Query: 445 TVMICGLCIEGGIEKAYDLLPDMEEK 470
           T ++ GLC EG   +A  L+  M++K
Sbjct: 663 TTLVKGLCGEGRCYEADQLVVSMQKK 688



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 118/487 (24%), Positives = 206/487 (42%), Gaps = 69/487 (14%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           S+ G+ E+  A+  ++ M+     P   ++N+L+  L  +  +     + + + + G LP
Sbjct: 353 SRDGKFEI--AIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLP 410

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
              + N ++ CFC M  +  A V   ++L+   SP+V+T   LI G C QG    A  L 
Sbjct: 411 STQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLL 470

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
                   +P+       Y  +I G  + G +     LF  M   GI P+   Y ++I  
Sbjct: 471 EIMKGNGLKPDAWT----YTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDG 526

Query: 241 Y--------CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH--------------PD 278
           Y          A+ W+  +     + + +   ++G  +   I                P+
Sbjct: 527 YFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPN 586

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR--KL 336
           V++Y S I+ LC++     A ++F +M+ R   P++  YSSLI G C  GR +DA    L
Sbjct: 587 VITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNL 646

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
              +   GC P+  +Y TL+       +  EA  L   M   G++P       + E++R 
Sbjct: 647 LARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQP-------SEEIYRA 699

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           L               + G CK+ ++ SA  +F  +   G + ++  Y  +IC LC E  
Sbjct: 700 L---------------LIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENF 744

Query: 457 IEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           IE+A            +C     +   M +++   DE+  ++L + L K+     C+ LL
Sbjct: 745 IEEA------------QC-----IFQTMLEKHWNSDEVAWTVLLDGLLKEGETDLCLKLL 787

Query: 517 PSFLSRN 523
               SRN
Sbjct: 788 HVMESRN 794



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 162/353 (45%), Gaps = 39/353 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ P  ++ N ++N  CK   V +A + +  I R    P+  T   LI G C       A
Sbjct: 197 GIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLA 256

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             +F + V   C PN +     Y+++I+GLC +G + +   +  +M  +GI P  + Y  
Sbjct: 257 FAMFDRMVKDGCDPNSVT----YSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTI 312

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
            +   C A       G +S A+EL  +           C P++ ++ ++I+ L +D   +
Sbjct: 313 PLVSLCDA-------GCSSEAVELLGKMKKRG------CVPNIQTFTALISGLSRDGKFE 359

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A  L+  M + G++P  V Y++LI+  C+ GR + A  +F  + S G +P T +YN +I
Sbjct: 360 IAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEII 419

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
             +  +  +++A+ ++ +M+  G  P                      ++  +N L+ G 
Sbjct: 420 KCFCLMGDIQKAMVIFDKMLKAGSSP----------------------NVITYNTLIYGY 457

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           CK   L +A  L + +   G +P+  TYT +I G    G +E A  L   M E
Sbjct: 458 CKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMME 510



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 123/271 (45%), Gaps = 31/271 (11%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P +L++ ++IN LCK   V +AK +   +      P+   Y+SLI G+C    +D A  +
Sbjct: 200 PSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAM 259

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP-------------D 383
           F  +  +GC P++ +Y+TLIN      ++EEA+ +  EM+  G+ P             D
Sbjct: 260 FDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCD 319

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
             C  EA EL   +       ++  F  L+ GL +  +   A  L+ K+   G  P  VT
Sbjct: 320 AGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVT 379

Query: 444 YTVMICGLCIEGGIEKAYDL---------LPDME--EKIRECL-------KAIELLHKMA 485
           Y  +I  LC+EG  E A+ +         LP  +   +I +C        KA+ +  KM 
Sbjct: 380 YNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKML 439

Query: 486 KRYVKPDEITVSILEELLNKDENCHECMNLL 516
           K    P+ IT + L     K  N +  M LL
Sbjct: 440 KAGSSPNVITYNTLIYGYCKQGNLNNAMRLL 470



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 132/300 (44%), Gaps = 19/300 (6%)

Query: 66  VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
            +++DAL  F  M+     P   ++N ++   +             ++   GLLP+ ++ 
Sbjct: 531 AKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITY 590

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS--GLFTKF 183
              ++  C+      AF     + ++ + P++ T   LI GLC +G+  +A    L  + 
Sbjct: 591 TSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARL 650

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
             + C PNV      Y +++ GLC +G   +   L + M+ +G+ P   +Y +L+   C 
Sbjct: 651 THYGCEPNVDT----YTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECK 706

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
            +  E A  N   +++           LG   H  +  Y ++I +LCK+  +++A+ +F 
Sbjct: 707 NLKVESAL-NIFYSMD----------TLGFQLH--LSDYKALICALCKENFIEEAQCIFQ 753

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            M  +    D V ++ L+DG    G  D   KL   +ES  C  +  +Y  L    S ++
Sbjct: 754 TMLEKHWNSDEVAWTVLLDGLLKEGETDLCLKLLHVMESRNCTLNFQTYVMLARELSALD 813


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 192/396 (48%), Gaps = 47/396 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G++P   + N +++ F K+  +  A+V    + R   S  V T   ++  LC +GK  +A
Sbjct: 187 GIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKA 246

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
                +F+ F       PNV+ Y +II G    G +   R +   M+ +GI PD++ Y S
Sbjct: 247 R----EFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGS 302

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI   C     E+A G       L ++ V    E+G++  P+ ++Y ++I+  C    ++
Sbjct: 303 LISGMCKEGRLEEASG-------LFDKMV----EIGLV--PNAVTYNTLIDGYCNKGDLE 349

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A     +M  +GI+P V  Y+ L+    + GR+ +A  +   +  +G IPD  +YN LI
Sbjct: 350 RAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILI 409

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFE 403
           N YS+    ++A  L+ EM+S G+ P +               + EA +LF  + +    
Sbjct: 410 NGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVS 469

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D+ +FN +VDG C +  +  A+ L K++ R    P+ VT+  ++ G C EG +E+A  L
Sbjct: 470 PDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARML 529

Query: 464 LPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           L +M+                 +R +KPD I+ + L
Sbjct: 530 LDEMK-----------------RRGIKPDHISYNTL 548



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 125/475 (26%), Positives = 208/475 (43%), Gaps = 98/475 (20%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGAL--AGK-KYYVNFICLSERLNTIGLLPDFVSLNI 127
           A   +  M  ++ +  + +FN ++  L   GK K    FI   E L   G  P+ VS N 
Sbjct: 211 AWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGL---GFKPNVVSYNT 267

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           +++ +     +  A   L  +  K   PD  T G LI G+C +G+  EASGLF K V   
Sbjct: 268 IIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEI- 326

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNK-----------------------VRVLFL---- 220
               ++PN + Y ++IDG C  G + +                       V  LF+    
Sbjct: 327 ---GLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRM 383

Query: 221 --------DMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
                   +M+ +GI PDA  YN LI  Y          GN   A +LH E ++   E  
Sbjct: 384 GEADDMIKEMRKKGIIPDAITYNILINGYSRC-------GNAKKAFDLHNEMLSKGIE-- 434

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
               P  ++Y S+I  L +   + +A +LF  +  +G+ PDV+++++++DG+C  G ++ 
Sbjct: 435 ----PTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVER 490

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392
           A  L   ++ +   PD  ++NTL+    +  KVEEA  L  EM   G++PD+        
Sbjct: 491 AFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDH-------- 542

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
                           +N L+ G  +   ++ A+ +  ++   G  P ++TY  +I  LC
Sbjct: 543 --------------ISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLC 588

Query: 453 IEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEIT-VSILEELLNKD 506
                            K +E   A ELL +M  + + PD+ T +S++E + N D
Sbjct: 589 -----------------KNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNVD 626



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 138/301 (45%), Gaps = 17/301 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L  A  + + M+     P + ++N L+ AL  +        + + +   G++PD ++ N
Sbjct: 347 DLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYN 406

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           IL+N + +      AF     +L K   P  VT   LI  L  + +  EA  LF K +  
Sbjct: 407 ILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILD- 465

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                V P+VI + +++DG C +G V +  +L  +M  + + PD   +N+L++  C    
Sbjct: 466 ---QGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGK 522

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            E+A+      + L E    G         PD +SY ++I+   +   +  A  +  +M 
Sbjct: 523 VEEAR------MLLDEMKRRG-------IKPDHISYNTLISGYGRRGDIKDAFRVRDEML 569

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           S G  P ++ Y++LI   C     D A +L   + ++G  PD S+Y +LI     ++ + 
Sbjct: 570 SIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNVDTLV 629

Query: 367 E 367
           E
Sbjct: 630 E 630



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 120/294 (40%), Gaps = 75/294 (25%)

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDV--------------------VVYSS---------- 319
           C+    D+A + F  MK +GI+P +                    V+Y+           
Sbjct: 168 CELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTV 227

Query: 320 -----LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
                +++  C  G++  AR+    +E  G  P+  SYNT+I+ YS    +E A  +   
Sbjct: 228 YTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDA 287

Query: 375 MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
           M   G+ PD+                        +  L+ G+CK  RL  A  LF K+  
Sbjct: 288 MRVKGIEPDS----------------------YTYGSLISGMCKEGRLEEASGLFDKMVE 325

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-----------IRECL-------K 476
            G  PN VTY  +I G C +G +E+A+    +M +K           +   L       +
Sbjct: 326 IGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGE 385

Query: 477 AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           A +++ +M K+ + PD IT +IL    ++  N  +  +L    LS+  E + +T
Sbjct: 386 ADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVT 439


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 108/403 (26%), Positives = 192/403 (47%), Gaps = 66/403 (16%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  PD ++ N  +N  C+   V  A   +  ++++   PDV T   ++  LC  G+  EA
Sbjct: 281 GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEA 340

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
            G+  + V   C    +P++  + ++I  LC    + +   L   +  +G+ PD + +N 
Sbjct: 341 KGILNQMVDRGC----LPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNI 396

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI   C         G+   AL L EE  N        C PD ++Y ++I++LC    + 
Sbjct: 397 LINALCKV-------GDPHLALRLFEEMKNSG------CTPDEVTYNTLIDNLCSLGKLG 443

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           KA +L  DM+S G     + Y+++IDG C   RI++A ++F  ++ +G   +  ++NTLI
Sbjct: 444 KALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLI 503

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFE 403
           +   K +K+++A  L  +MIS G++P+N               I +AA++  T+    FE
Sbjct: 504 DGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFE 563

Query: 404 LDLTVFNCLVDGLCKSWR-----------------------------------LRSAWEL 428
           +D+  +  L++GLCK+ R                                   +R A  L
Sbjct: 564 VDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSL 623

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGG-IEKAYDLLPDMEEK 470
           F+++   G  P+ +TY ++  GLC  GG I++A+D + +M +K
Sbjct: 624 FREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDK 666



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 122/428 (28%), Positives = 200/428 (46%), Gaps = 35/428 (8%)

Query: 53  LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSER 112
           LL  L E SK   +E       ++ M      P + +FN+L+ AL         + + E 
Sbjct: 152 LLNVLVEGSKMKLLE-----SVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEE 206

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +++ G+ PD  +   LM  F +   +  A     R+L    S   VT+  LI G C  G+
Sbjct: 207 MSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGR 266

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
             +A G   + +A        P+ I Y + ++GLC++  V     +   M   G  PD F
Sbjct: 267 VEDALGYIQQEIA----DGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVF 322

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            YN ++   C     E+AKG            +N   + G  C PD+ ++ ++I +LC  
Sbjct: 323 TYNIVVNCLCKNGQLEEAKG-----------ILNQMVDRG--CLPDITTFNTLIAALCTG 369

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             +++A +L   +  +G+ PDV  ++ LI+  C +G    A +LF  +++ GC PD  +Y
Sbjct: 370 NRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTY 429

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMG---------VRPDNSC----ILEAAELFRTLHN 399
           NTLI++   + K+ +AL L  +M S G            D  C    I EA E+F  +  
Sbjct: 430 NTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDL 489

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
                +   FN L+DGLCK  ++  A+EL  ++   G +PN +TY  ++   C +G I+K
Sbjct: 490 QGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKK 549

Query: 460 AYDLLPDM 467
           A D+L  M
Sbjct: 550 AADILETM 557



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 156/326 (47%), Gaps = 27/326 (8%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G++E  +A    N M+     P + +FN+L+ AL         + L+ ++   G+ PD
Sbjct: 333 KNGQLE--EAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPD 390

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVF----SPDVVTLGCLIRGLCMQGKFTEAS 177
             + NIL+N  CK   V D  +AL R+  ++     +PD VT   LI  LC  GK  +A 
Sbjct: 391 VYTFNILINALCK---VGDPHLAL-RLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKAL 446

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            L     +  C P    + I Y +IIDGLCK   + +   +F  M  +GI  +A  +N+L
Sbjct: 447 DLLKDMESTGC-PR---STITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTL 502

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           I   C     +DA        EL  + ++          P+ ++Y SI+   CK   + K
Sbjct: 503 IDGLCKDKKIDDA-------FELINQMISEG------LQPNNITYNSILTHYCKQGDIKK 549

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A ++   M + G   DVV Y +LI+G C  GR   A K+   +  +G  P   +YN ++ 
Sbjct: 550 AADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQ 609

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPD 383
           S  +   + +ALSL+ EM  +G  PD
Sbjct: 610 SLFRRNNIRDALSLFREMAEVGEPPD 635



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 144/322 (44%), Gaps = 50/322 (15%)

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           D  +N+++ LF      GI  D  VYN L+ V               + ++L E   +  
Sbjct: 130 DLILNQLQPLF------GIQADTVVYNHLLNVLV-----------EGSKMKLLESVYSEM 172

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
           G  G+   PDV+++ +++ +LC+   V  A  +  +M SRG+ PD   +++L+ G+   G
Sbjct: 173 GARGI--KPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEG 230

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----- 383
            I+ A ++   +   GC     + N LIN Y K+ +VE+AL    + I+ G  PD     
Sbjct: 231 SIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYN 290

Query: 384 --------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
                   N  +  A ++   +     + D+  +N +V+ LCK+ +L  A  +  ++   
Sbjct: 291 TFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDR 350

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLL---------PDMEE---------KIRECLKA 477
           G  P++ T+  +I  LC    +E+A DL          PD+           K+ +   A
Sbjct: 351 GCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLA 410

Query: 478 IELLHKMAKRYVKPDEITVSIL 499
           + L  +M      PDE+T + L
Sbjct: 411 LRLFEEMKNSGCTPDEVTYNTL 432



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 134/295 (45%), Gaps = 28/295 (9%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N+++  L  K        + ++++  G+  + ++ N L++  CK   + DAF  + ++
Sbjct: 463 TYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQM 522

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA--FDCRPNVIPNVICYASIIDGL 206
           + +   P+ +T   ++   C QG   +A+ +     A  F+       +V+ Y ++I+GL
Sbjct: 523 ISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEV------DVVTYGTLINGL 576

Query: 207 CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266
           CK G       +   M+ +G+ P    YN +++      N  DA       L L  E   
Sbjct: 577 CKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDA-------LSLFREM-- 627

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDV-LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
              E+G    PD L+Y  +   LC+    + +A +  L+M  +G IP+   +  L +G  
Sbjct: 628 --AEVGE--PPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLL 683

Query: 326 LMGRIDD--ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
            +G +DD   R + + +E    +    S  + I  Y KI K  +AL+ +G  + +
Sbjct: 684 NLG-MDDYFIRAIEIIMEK---VDLRESDVSAIRGYLKIRKFYDALATFGRFLEI 734



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 26/195 (13%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+V  Y  II  L     +D  K L  +M+  G    + V  S +D Y      DDA  L
Sbjct: 74  PEV--YEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDL 131

Query: 337 FVSIESE--GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
            ++      G   DT  YN L+N   +  K++   S+Y EM + G++P            
Sbjct: 132 ILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKP------------ 179

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
                     D+  FN L+  LC++ ++R+A  + +++   G  P+  T+T ++ G   E
Sbjct: 180 ----------DVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEE 229

Query: 455 GGIEKAYDLLPDMEE 469
           G IE A  +   M E
Sbjct: 230 GSIEAALRVKARMLE 244


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 108/403 (26%), Positives = 192/403 (47%), Gaps = 66/403 (16%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  PD ++ N  +N  C+   V  A   +  ++++   PDV T   ++  LC  G+  EA
Sbjct: 281 GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEA 340

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
            G+  + V   C    +P++  + ++I  LC    + +   L   +  +G+ PD + +N 
Sbjct: 341 KGILNQMVDRGC----LPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNI 396

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI   C         G+   AL L EE  N        C PD ++Y ++I++LC    + 
Sbjct: 397 LINALCKV-------GDPHLALRLFEEMKNSG------CTPDEVTYNTLIDNLCSLGKLG 443

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           KA +L  DM+S G     + Y+++IDG C   RI++A ++F  ++ +G   +  ++NTLI
Sbjct: 444 KALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLI 503

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFE 403
           +   K +K+++A  L  +MIS G++P+N               I +AA++  T+    FE
Sbjct: 504 DGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFE 563

Query: 404 LDLTVFNCLVDGLCKSWR-----------------------------------LRSAWEL 428
           +D+  +  L++GLCK+ R                                   +R A  L
Sbjct: 564 VDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSL 623

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGG-IEKAYDLLPDMEEK 470
           F+++   G  P+ +TY ++  GLC  GG I++A+D + +M +K
Sbjct: 624 FREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDK 666



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 122/428 (28%), Positives = 200/428 (46%), Gaps = 35/428 (8%)

Query: 53  LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSER 112
           LL  L E SK   +E       ++ M      P + +FN+L+ AL         + + E 
Sbjct: 152 LLNVLVEGSKMKLLE-----SVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEE 206

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +++ G+ PD  +   LM  F +   +  A     R+L    S   VT+  LI G C  G+
Sbjct: 207 MSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGR 266

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
             +A G   + +A        P+ I Y + ++GLC++  V     +   M   G  PD F
Sbjct: 267 VEDALGYIQQEIA----DGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVF 322

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            YN ++   C     E+AKG            +N   + G  C PD+ ++ ++I +LC  
Sbjct: 323 TYNIVVNCLCKNGQLEEAKG-----------ILNQMVDRG--CLPDITTFNTLIAALCTG 369

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             +++A +L   +  +G+ PDV  ++ LI+  C +G    A +LF  +++ GC PD  +Y
Sbjct: 370 NRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTY 429

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMG---------VRPDNSC----ILEAAELFRTLHN 399
           NTLI++   + K+ +AL L  +M S G            D  C    I EA E+F  +  
Sbjct: 430 NTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDL 489

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
                +   FN L+DGLCK  ++  A+EL  ++   G +PN +TY  ++   C +G I+K
Sbjct: 490 QGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKK 549

Query: 460 AYDLLPDM 467
           A D+L  M
Sbjct: 550 AADILETM 557



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 156/326 (47%), Gaps = 27/326 (8%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G++E  +A    N M+     P + +FN+L+ AL         + L+ ++   G+ PD
Sbjct: 333 KNGQLE--EAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPD 390

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVF----SPDVVTLGCLIRGLCMQGKFTEAS 177
             + NIL+N  CK   V D  +AL R+  ++     +PD VT   LI  LC  GK  +A 
Sbjct: 391 VYTFNILINALCK---VGDPHLAL-RLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKAL 446

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            L     +  C P    + I Y +IIDGLCK   + +   +F  M  +GI  +A  +N+L
Sbjct: 447 DLLKDMESTGC-PR---STITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTL 502

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           I   C     +DA        EL  + ++          P+ ++Y SI+   CK   + K
Sbjct: 503 IDGLCKDKKIDDA-------FELINQMISEG------LQPNNITYNSILTHYCKQGDIKK 549

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A ++   M + G   DVV Y +LI+G C  GR   A K+   +  +G  P   +YN ++ 
Sbjct: 550 AADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQ 609

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPD 383
           S  +   + +ALSL+ EM  +G  PD
Sbjct: 610 SLFRRNNIRDALSLFREMAEVGEPPD 635



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 144/322 (44%), Gaps = 50/322 (15%)

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           D  +N+++ LF      GI  D  VYN L+ V               + ++L E   +  
Sbjct: 130 DLILNQLQPLF------GIQADTVVYNHLLNVLV-----------EGSKMKLLESVYSEM 172

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
           G  G+   PDV+++ +++ +LC+   V  A  +  +M SRG+ PD   +++L+ G+   G
Sbjct: 173 GARGI--KPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEG 230

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----- 383
            I+ A ++   +   GC     + N LIN Y K+ +VE+AL    + I+ G  PD     
Sbjct: 231 SIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYN 290

Query: 384 --------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
                   N  +  A ++   +     + D+  +N +V+ LCK+ +L  A  +  ++   
Sbjct: 291 TFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDR 350

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLL---------PDMEE---------KIRECLKA 477
           G  P++ T+  +I  LC    +E+A DL          PD+           K+ +   A
Sbjct: 351 GCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLA 410

Query: 478 IELLHKMAKRYVKPDEITVSIL 499
           + L  +M      PDE+T + L
Sbjct: 411 LRLFEEMKNSGCTPDEVTYNTL 432



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 134/295 (45%), Gaps = 28/295 (9%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N+++  L  K        + ++++  G+  + ++ N L++  CK   + DAF  + ++
Sbjct: 463 TYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQM 522

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA--FDCRPNVIPNVICYASIIDGL 206
           + +   P+ +T   ++   C QG   +A+ +     A  F+       +V+ Y ++I+GL
Sbjct: 523 ISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEV------DVVTYGTLINGL 576

Query: 207 CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266
           CK G       +   M+ +G+ P    YN +++      N  DA       L L  E   
Sbjct: 577 CKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDA-------LSLFREM-- 627

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDV-LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
              E+G    PD L+Y  +   LC+    + +A +  L+M  +G IP+   +  L +G  
Sbjct: 628 --AEVGE--PPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLL 683

Query: 326 LMGRIDD--ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
            +G +DD   R + + +E    +    S  + I  Y KI K  +AL+ +G  + +
Sbjct: 684 NLG-MDDYFIRAIEIIMEK---VDLRESDVSAIRGYLKIRKFYDALATFGRFLEI 734



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 26/195 (13%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+V  Y  II  L     +D  K L  +M+  G    + V  S +D Y      DDA  L
Sbjct: 74  PEV--YEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDL 131

Query: 337 FVSIESE--GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
            ++      G   DT  YN L+N   +  K++   S+Y EM + G++P            
Sbjct: 132 ILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKP------------ 179

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
                     D+  FN L+  LC++ ++R+A  + +++   G  P+  T+T ++ G   E
Sbjct: 180 ----------DVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEE 229

Query: 455 GGIEKAYDLLPDMEE 469
           G IE A  +   M E
Sbjct: 230 GSIEAALRVKARMLE 244


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 113/387 (29%), Positives = 184/387 (47%), Gaps = 48/387 (12%)

Query: 81  MQPTPFMPSFNSLLGALA--GKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGV 138
           M  +P + ++N L+      G+ Y      L + +   G  P+  + +I++NC+CK+  V
Sbjct: 202 MTCSPDIMTYNVLMDGYCKIGQTYEAQ--SLMKEILKAGYEPNVFTYSIIINCYCKLDKV 259

Query: 139 SDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVIC 198
            +A+    +++     P+ VT   LI G C  G   +A  LF +     C+  ++     
Sbjct: 260 EEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVT---- 315

Query: 199 YASIIDGLCKD-GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
           Y ++ID LCK  G V     LF  ++G G+ P    YNSLI+ +C      DA+   S A
Sbjct: 316 YNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFC------DAR-RLSEA 368

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
           ++  +E           C P+V++Y  +I+ LCK   + +A +   DMK+ G  P VV Y
Sbjct: 369 MQYFDEMEGK-------CAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTY 421

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
             LI+G+C  G +  A   F  ++  GC P+T  +NTLI+   K E+  + L L   M +
Sbjct: 422 GGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHA 481

Query: 378 MGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
            G +P                      D+  +NCL+ GLC + R+  A  LF  +     
Sbjct: 482 EGCKP----------------------DVITYNCLISGLCSANRVEDAQRLFDGM---AC 516

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLL 464
            PNV T+  +I GLC +  +E+A ++L
Sbjct: 517 APNVTTFNFLIRGLCAQKKVEEARNIL 543



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 115/427 (26%), Positives = 189/427 (44%), Gaps = 44/427 (10%)

Query: 41  SNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGK 100
           S+SV+T      L     EN  +  +E   A+ FF  M      P + S++ LL AL+  
Sbjct: 132 SSSVATGTYNLVLKGLCWENKSANRLE--QAMEFFKEMKASGVEPDLESYHILLSALSDS 189

Query: 101 KYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTL 160
                   L    + +   PD ++ N+LM+ +CK+    +A   +  IL+  + P+V T 
Sbjct: 190 GRMAEAHAL---FSAMTCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTY 246

Query: 161 GCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFL 220
             +I   C   K  EA  +F K +  +C    +PN + + ++I G CK G +     LF 
Sbjct: 247 SIIINCYCKLDKVEEAWEVFMKMIESNC----VPNAVTFNTLIAGFCKAGMLEDAIKLFA 302

Query: 221 DMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVL 280
           +M+  G       YN+LI   C        +G    A++L  +        G    P ++
Sbjct: 303 EMEKIGCKATIVTYNTLIDSLC------KKRGGVYTAVDLFNKLE------GAGLTPTIV 350

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
           +Y S+I   C    + +A + F +M+ +   P+V+ YS LIDG C + R+ +A K    +
Sbjct: 351 TYNSLIQGFCDARRLSEAMQYFDEMEGK-CAPNVITYSILIDGLCKVRRMKEAAKTLEDM 409

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNT 400
           ++ G  P   +Y  LIN + K  +++ AL  + +M   G  P+                 
Sbjct: 410 KAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNT---------------- 453

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
                  +FN L+DGLCK+ R      L   +   G +P+V+TY  +I GLC    +E A
Sbjct: 454 ------VIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDA 507

Query: 461 YDLLPDM 467
             L   M
Sbjct: 508 QRLFDGM 514



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 126/469 (26%), Positives = 197/469 (42%), Gaps = 57/469 (12%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +++ A+  F+ M      P   + N+LL  L       + + L   +     LP   S N
Sbjct: 47  QMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHN 106

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK----FTEASGLFTK 182
           IL+  F     V DA   L  + +   S    T   +++GLC + K      +A   F +
Sbjct: 107 ILLRGFFMAGRVRDALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKE 166

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
             A      V P++  Y  ++  L   G + +   LF  M      PD   YN L+  YC
Sbjct: 167 MKA----SGVEPDLESYHILLSALSDSGRMAEAHALFSAMT---CSPDIMTYNVLMDGYC 219

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
                    G T  A  L +E +    E      P+V +Y  IIN  CK   V++A E+F
Sbjct: 220 -------KIGQTYEAQSLMKEILKAGYE------PNVFTYSIIINCYCKLDKVEEAWEVF 266

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
           + M     +P+ V +++LI G+C  G ++DA KLF  +E  GC     +YNTLI+S  K 
Sbjct: 267 MKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKK 326

Query: 363 E-KVEEALSLYGEMISMGVRP-------------DNSCILEAAELFRTLHNTKFELDLTV 408
              V  A+ L+ ++   G+ P             D   + EA + F  +   K   ++  
Sbjct: 327 RGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEG-KCAPNVIT 385

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA-------- 460
           ++ L+DGLCK  R++ A +  + +  +G  P VVTY  +I G C  G ++ A        
Sbjct: 386 YSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMK 445

Query: 461 ----------YDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                     ++ L D   K       + LL  M     KPD IT + L
Sbjct: 446 LAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCL 494



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 101/365 (27%), Positives = 167/365 (45%), Gaps = 51/365 (13%)

Query: 148 ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207
           +L  +F+P+  T   LIRG C  G+  +A  +F+   +      ++PN     +++ GLC
Sbjct: 23  VLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS----SGLLPNASTMNTLLLGLC 78

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA--------KGNTSAA-- 257
           + G ++    LF +M+     P +  +N L+R +  A    DA        K ++S A  
Sbjct: 79  EIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATG 138

Query: 258 ------------------LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
                             LE   EF       GV   PD+ SY  ++++L     + +A 
Sbjct: 139 TYNLVLKGLCWENKSANRLEQAMEFFKEMKASGV--EPDLESYHILLSALSDSGRMAEAH 196

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            LF  M      PD++ Y+ L+DGYC +G+  +A+ L   I   G  P+  +Y+ +IN Y
Sbjct: 197 ALFSAMTCS---PDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCY 253

Query: 360 SKIEKVEEALSLYGEMISMGVRPD----NSCIL---------EAAELFRTLHNTKFELDL 406
            K++KVEEA  ++ +MI     P+    N+ I          +A +LF  +     +  +
Sbjct: 254 CKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATI 313

Query: 407 TVFNCLVDGLCKS-WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
             +N L+D LCK    + +A +LF KL   G  P +VTY  +I G C    + +A     
Sbjct: 314 VTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFD 373

Query: 466 DMEEK 470
           +ME K
Sbjct: 374 EMEGK 378



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 117/265 (44%), Gaps = 61/265 (23%)

Query: 257 ALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV 316
           AL L +E + G      +  P+  +Y  +I   CK   + +A  +F DMKS G++P+   
Sbjct: 16  ALRLFKEVLAG------LFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNAST 69

Query: 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY----------------- 359
            ++L+ G C +G++  A KLF  +++   +P ++S+N L+  +                 
Sbjct: 70  MNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMR 129

Query: 360 ----------------------SKIEKVEEALSLYGEMISMGVRP-------------DN 384
                                     ++E+A+  + EM + GV P             D+
Sbjct: 130 KSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDS 189

Query: 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
             + EA  LF  +  +    D+  +N L+DG CK  +   A  L K++ + G EPNV TY
Sbjct: 190 GRMAEAHALFSAMTCSP---DIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTY 246

Query: 445 TVMICGLCIEGGIEKAYDLLPDMEE 469
           +++I   C    +E+A+++   M E
Sbjct: 247 SIIINCYCKLDKVEEAWEVFMKMIE 271



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 104/245 (42%), Gaps = 32/245 (13%)

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           ++L+ G     + D A +LF  + +    P+  +YN LI  + K  ++ +A+S++ +M S
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60

Query: 378 MGVRPD----NSCIL---------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
            G+ P+    N+ +L          A +LFR +    F       N L+ G   + R+R 
Sbjct: 61  SGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRD 120

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGG----IEKAYDLLPDME--------EKIR 472
           A    + + +        TY +++ GLC E      +E+A +   +M+        E   
Sbjct: 121 ALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYH 180

Query: 473 ECLKAIELLHKMAKRYV-------KPDEITVSILEELLNKDENCHECMNLLPSFLSRNQE 525
             L A+    +MA+ +         PD +T ++L +   K    +E  +L+   L    E
Sbjct: 181 ILLSALSDSGRMAEAHALFSAMTCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYE 240

Query: 526 ESKLT 530
            +  T
Sbjct: 241 PNVFT 245


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 108/403 (26%), Positives = 192/403 (47%), Gaps = 66/403 (16%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  PD ++ N  +N  C+   V  A   +  ++++   PDV T   ++  LC  G+  EA
Sbjct: 281 GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEA 340

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
            G+  + V   C    +P++  + ++I  LC    + +   L   +  +G+ PD + +N 
Sbjct: 341 KGILNQMVDRGC----LPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNI 396

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI   C         G+   AL L EE  N        C PD ++Y ++I++LC    + 
Sbjct: 397 LINALCKV-------GDPHLALRLFEEMKNSG------CTPDEVTYNTLIDNLCSLGKLG 443

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           KA +L  DM+S G     + Y+++IDG C   RI++A ++F  ++ +G   +  ++NTLI
Sbjct: 444 KALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLI 503

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFE 403
           +   K +K+++A  L  +MIS G++P+N               I +AA++  T+    FE
Sbjct: 504 DGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFE 563

Query: 404 LDLTVFNCLVDGLCKSWR-----------------------------------LRSAWEL 428
           +D+  +  L++GLCK+ R                                   +R A  L
Sbjct: 564 VDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSL 623

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGG-IEKAYDLLPDMEEK 470
           F+++   G  P+ +TY ++  GLC  GG I++A+D + +M +K
Sbjct: 624 FREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDK 666



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 100/326 (30%), Positives = 156/326 (47%), Gaps = 27/326 (8%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G++E  +A    N M+     P + +FN+L+ AL         + L+ ++   G+ PD
Sbjct: 333 KNGQLE--EAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPD 390

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVF----SPDVVTLGCLIRGLCMQGKFTEAS 177
             + NIL+N  CK   V D  +AL R+  ++     +PD VT   LI  LC  GK  +A 
Sbjct: 391 VYTFNILINALCK---VGDPHLAL-RLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKAL 446

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            L     +  C P    + I Y +IIDGLCK   + +   +F  M  +GI  +A  +N+L
Sbjct: 447 DLLKDMESTGC-PR---STITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTL 502

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           I   C     +DA G            +N     G+   P+ ++Y SI+   CK   + K
Sbjct: 503 IDGLCKDKKIDDAFG-----------LINQMISEGL--QPNNITYNSILTHYCKQGDIKK 549

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A ++   M + G   DVV Y +LI+G C  GR   A K+   +  +G  P   +YN ++ 
Sbjct: 550 AADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQ 609

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPD 383
           S  +   + +ALSL+ EM  +G  PD
Sbjct: 610 SLFRRNNIRDALSLFREMAEVGEPPD 635



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 144/322 (44%), Gaps = 50/322 (15%)

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           D  +N+++ LF      GI  D  VYN L+ V               + ++L E   +  
Sbjct: 130 DLILNQLQPLF------GIQADTVVYNHLLNVLV-----------EGSKMKLLESVYSEM 172

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
           G  G+   PDV+++ +++ +LC+   V  A  +  +M SRG+ PD   +++L+ G+   G
Sbjct: 173 GARGI--KPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEG 230

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----- 383
            I+ A ++   +   GC     + N LIN Y K+ +VE+AL    + I+ G  PD     
Sbjct: 231 SIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYN 290

Query: 384 --------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
                   N  +  A ++   +     + D+  +N +V+ LCK+ +L  A  +  ++   
Sbjct: 291 TFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDR 350

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLL---------PDMEE---------KIRECLKA 477
           G  P++ T+  +I  LC    +E+A DL          PD+           K+ +   A
Sbjct: 351 GCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLA 410

Query: 478 IELLHKMAKRYVKPDEITVSIL 499
           + L  +M      PDE+T + L
Sbjct: 411 LRLFEEMKNSGCTPDEVTYNTL 432



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 134/295 (45%), Gaps = 28/295 (9%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N+++  L  K        + ++++  G+  + ++ N L++  CK   + DAF  + ++
Sbjct: 463 TYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQM 522

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA--FDCRPNVIPNVICYASIIDGL 206
           + +   P+ +T   ++   C QG   +A+ +     A  F+       +V+ Y ++I+GL
Sbjct: 523 ISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEV------DVVTYGTLINGL 576

Query: 207 CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266
           CK G       +   M+ +G+ P    YN +++      N  DA       L L  E   
Sbjct: 577 CKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDA-------LSLFREM-- 627

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDV-LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
              E+G    PD L+Y  +   LC+    + +A +  L+M  +G IP+   +  L +G  
Sbjct: 628 --AEVGE--PPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLL 683

Query: 326 LMGRIDD--ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
            +G +DD   R + + +E    +    S  + I  Y KI K  +AL+ +G  + +
Sbjct: 684 NLG-MDDYFIRAIEIIMEK---VDLRESDVSAIRGYLKIRKFYDALATFGRFLEI 734



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 26/195 (13%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+V  Y  II  L     +D  K L  +M+  G    + V  S +D Y      DDA  L
Sbjct: 74  PEV--YEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDL 131

Query: 337 FVSIESE--GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
            ++      G   DT  YN L+N   +  K++   S+Y EM + G++P            
Sbjct: 132 ILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKP------------ 179

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
                     D+  FN L+  LC++ ++R+A  + +++   G  P+  T+T ++ G   E
Sbjct: 180 ----------DVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEE 229

Query: 455 GGIEKAYDLLPDMEE 469
           G IE A  +   M E
Sbjct: 230 GSIEAALRVKARMLE 244


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 125/443 (28%), Positives = 198/443 (44%), Gaps = 62/443 (13%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            +N+AL     M  M   P + +FN ++  L           L +R+   G  P+ ++  
Sbjct: 258 RVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYG 317

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG-LFTKFVA 185
           +LMN  C++  V +A V    +L KV +P+ V    LI G    G+  EA+  L+ K + 
Sbjct: 318 VLMNGLCRVGKVDEAQV----LLNKVPTPNDVHFTILINGYVKSGRLDEANAFLYDKMIK 373

Query: 186 FDCRPNVI-------------------------------PNVICYASIIDGLCKDGFVNK 214
             CRP+V                                PN+I Y +++DG CK   + +
Sbjct: 374 NGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEE 433

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
              +  +M  +G   +   YN L+R  C         G    AL++  E  +        
Sbjct: 434 AGYVLNEMSAKGFELNIMGYNVLLRALC-------KNGKVPKALDMLGEMSDKG------ 480

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
           C PD+ ++ ++I  LCK    + A  L+ DM   G+I + V Y++LI  +   G I +A 
Sbjct: 481 CKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEAL 540

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN-SC------- 386
           KL   +   GC  D  +YN LI ++ K+   E+AL L+ EM+   + P N SC       
Sbjct: 541 KLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGL 600

Query: 387 -----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
                +  A EL R + +     D+  +N L++GLCK   +R A+ LF KL   G +P+ 
Sbjct: 601 CRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDA 660

Query: 442 VTYTVMICGLCIEGGIEKAYDLL 464
           +TY  +IC  C  G  + AY LL
Sbjct: 661 ITYNTLICWHCRAGMFDDAYLLL 683



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 118/478 (24%), Positives = 215/478 (44%), Gaps = 52/478 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E+++A      M      P    + +L+ AL+ +      + L E +  +G LPD  + N
Sbjct: 223 EVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFN 282

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            ++   C++  + +    + R+L + F+P+ +T G L+ GLC  GK  EA  L  K    
Sbjct: 283 DVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVPT- 341

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD-MKGRGIYPDAFVYNSLIRVYCCAV 245
                  PN + +  +I+G  K G +++      D M   G  PD F +N+LI   C   
Sbjct: 342 -------PNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLC--- 391

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
                KG   +A+++  + ++ NG     C P++++Y ++++  CK   +++A  +  +M
Sbjct: 392 ----KKGLMGSAVDMVND-MSANG-----CTPNLITYTTLLDGFCKKNQLEEAGYVLNEM 441

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
            ++G   +++ Y+ L+   C  G++  A  +   +  +GC PD  ++NTLI    K+++ 
Sbjct: 442 SAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRK 501

Query: 366 EEALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFELDLTVFNCL 412
           E+AL+LY +M+  GV  +                I EA +L   +      LD   +N L
Sbjct: 502 EDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGL 561

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIR 472
           +   CK      A  LF ++ R    P+ ++  ++I GLC                 ++ 
Sbjct: 562 IKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLC-----------------RVG 604

Query: 473 ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           +   A+ELL  M  R + PD +T + L   L K  N  E  NL     +   +   +T
Sbjct: 605 KVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAIT 662



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 96/399 (24%), Positives = 176/399 (44%), Gaps = 40/399 (10%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           KSG ++  +A   ++ MI     P + +FN+L+  L  K    + + +   ++  G  P+
Sbjct: 356 KSGRLDEANAF-LYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPN 414

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            ++   L++ FCK   + +A   L  +  K F  +++    L+R LC  GK  +A  +  
Sbjct: 415 LITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLG 474

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           +     C+P++      + ++I GLCK         L+ DM   G+  +   YN+LI  +
Sbjct: 475 EMSDKGCKPDIFT----FNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAF 530

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
                     G    AL+L       N  L   C  D ++Y  +I + CK    +KA  L
Sbjct: 531 L-------RGGAIQEALKLV------NDMLFRGCPLDEITYNGLIKAFCKLGATEKALGL 577

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F +M  + ++P  +  + LI+G C +G++ +A +L   +   G  PD  +YN+LIN   K
Sbjct: 578 FDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCK 637

Query: 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
           +  + EA +L+ ++ + G++P                      D   +N L+   C++  
Sbjct: 638 MGNIREAFNLFNKLQAEGIQP----------------------DAITYNTLICWHCRAGM 675

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
              A+ L  +       PN VT+ +++     E G E  
Sbjct: 676 FDDAYLLLLRGVENAFIPNDVTWYILVSNFIKEIGKENG 714



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 161/362 (44%), Gaps = 35/362 (9%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P F S N++++        S A      +L K   P V T G +++ LCM  +   A  L
Sbjct: 171 PTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSL 230

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
                   C    +PN + Y ++I  L K   VN+   L  +M   G  PD   +N +I 
Sbjct: 231 LRDMTKHGC----VPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVI- 285

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
              C +N             +HE     +  L     P+ ++Y  ++N LC+   VD+A+
Sbjct: 286 YGLCRLN------------RIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQ 333

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK-LFVSIESEGCIPDTSSYNTLINS 358
            L   + +    P+ V ++ LI+GY   GR+D+A   L+  +   GC PD  ++NTLI+ 
Sbjct: 334 VLLNKVPT----PNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHG 389

Query: 359 YSKIEKVEEALSLYGEMISMGVRP---------DNSC----ILEAAELFRTLHNTKFELD 405
             K   +  A+ +  +M + G  P         D  C    + EA  +   +    FEL+
Sbjct: 390 LCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELN 449

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
           +  +N L+  LCK+ ++  A ++  ++   G +P++ T+  +I GLC     E A  L  
Sbjct: 450 IMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYR 509

Query: 466 DM 467
           DM
Sbjct: 510 DM 511



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 93/190 (48%), Gaps = 22/190 (11%)

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
           C P   SY  +++ L        A  +F +M S+G+IP V  +  ++   C++  +D+A 
Sbjct: 169 CEPTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNAC 228

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
            L   +   GC+P++  Y TLI++ SK ++V EAL L  EM  MG  P            
Sbjct: 229 SLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLP------------ 276

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
                     D+  FN ++ GLC+  R+    +L  ++   G  PN +TY V++ GLC  
Sbjct: 277 ----------DVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRV 326

Query: 455 GGIEKAYDLL 464
           G +++A  LL
Sbjct: 327 GKVDEAQVLL 336


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 108/403 (26%), Positives = 192/403 (47%), Gaps = 66/403 (16%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  PD ++ N  +N  C+   V  A   +  ++++   PDV T   ++  LC  G+  EA
Sbjct: 189 GFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEA 248

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
            G+  + V   C    +P++  + ++I  LC    + +   L   +  +G+ PD + +N 
Sbjct: 249 KGILNQMVDRGC----LPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNI 304

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI   C         G+   AL L EE  N        C PD ++Y ++I++LC    + 
Sbjct: 305 LINALCKV-------GDPHLALRLFEEMKNSG------CTPDEVTYNTLIDNLCSLGKLG 351

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           KA +L  DM+S G     + Y+++IDG C   RI++A ++F  ++ +G   +  ++NTLI
Sbjct: 352 KALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLI 411

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFE 403
           +   K +K+++A  L  +MIS G++P+N               I +AA++  T+    FE
Sbjct: 412 DGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFE 471

Query: 404 LDLTVFNCLVDGLCKSWR-----------------------------------LRSAWEL 428
           +D+  +  L++GLCK+ R                                   +R A  L
Sbjct: 472 VDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSL 531

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGG-IEKAYDLLPDMEEK 470
           F+++   G  P+ +TY ++  GLC  GG I++A+D + +M +K
Sbjct: 532 FREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDK 574



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 114/396 (28%), Positives = 189/396 (47%), Gaps = 30/396 (7%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + +FN+L+ AL         + + E +++ G+ PD  +   LM  F +   +  A   
Sbjct: 87  PDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRV 146

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
             R+L    S   VT+  LI G C  G+  +A G   + +A        P+ I Y + ++
Sbjct: 147 KARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIA----DGFEPDQITYNTFVN 202

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           GLC++  V     +   M   G  PD F YN ++   C     E+AKG            
Sbjct: 203 GLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKG-----------I 251

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           +N   + G  C PD+ ++ ++I +LC    +++A +L   +  +G+ PDV  ++ LI+  
Sbjct: 252 LNQMVDRG--CLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINAL 309

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG----- 379
           C +G    A +LF  +++ GC PD  +YNTLI++   + K+ +AL L  +M S G     
Sbjct: 310 CKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRST 369

Query: 380 ----VRPDNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
                  D  C    I EA E+F  +       +   FN L+DGLCK  ++  A+EL  +
Sbjct: 370 ITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQ 429

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +   G +PN +TY  ++   C +G I+KA D+L  M
Sbjct: 430 MISEGLQPNNITYNSILTHYCKQGDIKKAADILETM 465



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 156/326 (47%), Gaps = 27/326 (8%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G++E  +A    N M+     P + +FN+L+ AL         + L+ ++   G+ PD
Sbjct: 241 KNGQLE--EAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPD 298

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVF----SPDVVTLGCLIRGLCMQGKFTEAS 177
             + NIL+N  CK   V D  +AL R+  ++     +PD VT   LI  LC  GK  +A 
Sbjct: 299 VYTFNILINALCK---VGDPHLAL-RLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKAL 354

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            L     +  C P    + I Y +IIDGLCK   + +   +F  M  +GI  +A  +N+L
Sbjct: 355 DLLKDMESTGC-PR---STITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTL 410

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           I   C     +DA        EL  + ++          P+ ++Y SI+   CK   + K
Sbjct: 411 IDGLCKDKKIDDA-------FELINQMISEG------LQPNNITYNSILTHYCKQGDIKK 457

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A ++   M + G   DVV Y +LI+G C  GR   A K+   +  +G  P   +YN ++ 
Sbjct: 458 AADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQ 517

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPD 383
           S  +   + +ALSL+ EM  +G  PD
Sbjct: 518 SLFRRNNIRDALSLFREMAEVGEPPD 543



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 144/322 (44%), Gaps = 50/322 (15%)

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           D  +N+++ LF      GI  D  VYN L+ V               + ++L E   +  
Sbjct: 38  DLILNQLQPLF------GIQADTVVYNHLLNVLV-----------EGSKMKLLESVYSEM 80

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
           G  G+   PDV+++ +++ +LC+   V  A  +  +M SRG+ PD   +++L+ G+   G
Sbjct: 81  GARGI--KPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEG 138

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----- 383
            I+ A ++   +   GC     + N LIN Y K+ +VE+AL    + I+ G  PD     
Sbjct: 139 SIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYN 198

Query: 384 --------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
                   N  +  A ++   +     + D+  +N +V+ LCK+ +L  A  +  ++   
Sbjct: 199 TFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDR 258

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLL---------PDMEE---------KIRECLKA 477
           G  P++ T+  +I  LC    +E+A DL          PD+           K+ +   A
Sbjct: 259 GCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLA 318

Query: 478 IELLHKMAKRYVKPDEITVSIL 499
           + L  +M      PDE+T + L
Sbjct: 319 LRLFEEMKNSGCTPDEVTYNTL 340



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 134/295 (45%), Gaps = 28/295 (9%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N+++  L  K        + ++++  G+  + ++ N L++  CK   + DAF  + ++
Sbjct: 371 TYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQM 430

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA--FDCRPNVIPNVICYASIIDGL 206
           + +   P+ +T   ++   C QG   +A+ +     A  F+       +V+ Y ++I+GL
Sbjct: 431 ISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEV------DVVTYGTLINGL 484

Query: 207 CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266
           CK G       +   M+ +G+ P    YN +++           + N   AL L  E   
Sbjct: 485 CKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLF-------RRNNIRDALSLFREM-- 535

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVL-VDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
              E+G    PD L+Y  +   LC+    + +A +  L+M  +G IP+   +  L +G  
Sbjct: 536 --AEVGE--PPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLL 591

Query: 326 LMGRIDD--ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
            +G +DD   R + + +E    +    S  + I  Y KI K  +AL+ +G  + +
Sbjct: 592 NLG-MDDYFIRAIEIIMEK---VDLRESDVSAIRGYLKIRKFYDALATFGRFLEI 642


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 113/383 (29%), Positives = 179/383 (46%), Gaps = 56/383 (14%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL P+    N+LM    ++  ++ A      +  +     VV+   +I G+C  G    A
Sbjct: 111 GLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGA 170

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L  +         V P+V  Y ++I GLC+ G +   R +F  M GRG+ P+A V+  
Sbjct: 171 ETLHRRM----SEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTI 226

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI  +C        KG+    LELH E      E GV   PD ++Y +I+N LC+   + 
Sbjct: 227 LIDAHC-------KKGDAETMLELHREMR----ERGV--RPDAVTYNAIVNGLCRARDLK 273

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A  + ++M+S G+ PD V Y++LIDGYC    +D A ++  ++ +EG   D  +Y  LI
Sbjct: 274 SASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALI 333

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           +  SK  +  +A  + GEM+  G+ PDN                      T +  ++D  
Sbjct: 334 SGLSKAGRSADAERVLGEMMEAGLEPDN----------------------TTYTMVIDAF 371

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLK 476
           C+   +++   L K++   G +P VVTY V++ G C  G ++ A     DM         
Sbjct: 372 CRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNA-----DM--------- 417

Query: 477 AIELLHKMAKRYVKPDEITVSIL 499
              LL+ M    V PD+IT +IL
Sbjct: 418 ---LLNAMINIGVSPDDITYNIL 437



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 183/404 (45%), Gaps = 45/404 (11%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           +A  F+  ++     P    FN L+  L       +   + + + + G+    VS N ++
Sbjct: 99  EACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMI 158

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           +  C+   +  A     R+     +PDV T G LI+GLC  G+  +A G+F K     C 
Sbjct: 159 SGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKM----CG 214

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
             + PN + +  +ID  CK G    +  L  +M+ RG+ PDA  YN+++   C A + + 
Sbjct: 215 RGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKS 274

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
           A G     +E+    +           PD ++Y ++I+  CK+  +D A E+  +M + G
Sbjct: 275 ASG---IVVEMRSAGL----------RPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEG 321

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
           +  D V Y++LI G    GR  DA ++   +   G  PD ++Y  +I+++ +   V+  L
Sbjct: 322 VGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGL 381

Query: 370 SLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
            L  EM + G +P                       +  +N +++G CK  ++++A  L 
Sbjct: 382 RLLKEMQNKGRKP----------------------GVVTYNVIMNGFCKLGQMKNADMLL 419

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGI------EKAYDLLPDM 467
             +   G  P+ +TY +++ G C  G +      + A   +PD+
Sbjct: 420 NAMINIGVSPDDITYNILLDGHCKHGKVTDIEELKSAKGTVPDL 463



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/313 (21%), Positives = 122/313 (38%), Gaps = 66/313 (21%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L+ A      M     TP + ++ +L+  L       +   + E++   G+ P+ V   
Sbjct: 166 DLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFT 225

Query: 127 ILMNCFCKMIGVSDAFVALGRILR-KVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           IL++  CK  G ++  + L R +R +   PD VT   ++ GLC       ASG+  +  +
Sbjct: 226 ILIDAHCKK-GDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRS 284

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
              RP+ +     Y ++IDG CK+  ++    +  +M   G+  D   Y +LI     A 
Sbjct: 285 AGLRPDTV----TYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAG 340

Query: 246 NWEDA----------------------------KGNTSAALELHEEFVNGNGELGVICH- 276
              DA                            KG+    L L +E  N   + GV+ + 
Sbjct: 341 RSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYN 400

Query: 277 ----------------------------PDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
                                       PD ++Y  +++  CK   V   +EL     ++
Sbjct: 401 VIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEEL---KSAK 457

Query: 309 GIIPDVVVYSSLI 321
           G +PD+ VY+S++
Sbjct: 458 GTVPDLGVYTSIV 470


>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
          Length = 668

 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 121/467 (25%), Positives = 214/467 (45%), Gaps = 58/467 (12%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N+L+   AG   Y +       + ++ + PD  +   L+   C    V+DA   L  +
Sbjct: 112 AYNTLV---AGYCRYGHLDAARRLIGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDM 168

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
           LR+   P+VVT   L+  +C    F +A  +  +  A  C     PN++ Y  II+G+C+
Sbjct: 169 LRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGC----TPNIVTYNVIINGMCR 224

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           +G V+  R L   +   G  PD   Y +L++  C +  W+D +       EL  E +  N
Sbjct: 225 EGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVE-------ELFAEMMEKN 277

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                 C P+ +++  +I   C+  +V++A ++   M       +  + + +I+  C  G
Sbjct: 278 ------CMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQG 331

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS--- 385
           R+DDA K   ++ S GC PDT SY T++    + E+  +A  L  EM+     P+     
Sbjct: 332 RVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEVTFN 391

Query: 386 ---CIL-------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
              CIL       +A  L   +      + +  +N LV+G C    + SA ELF+ +P  
Sbjct: 392 TFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMP-- 449

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL-------------------- 475
             +PN +TYT ++ GLC    ++ A +L+ +M    R+C                     
Sbjct: 450 -CKPNTITYTTLLTGLCNAERLDAAAELVAEMLH--RDCPPNVVTFNVLVNFFCQKGFLD 506

Query: 476 KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
           +AIEL+ +M +    P+ IT + L + + KD +  + + LL   +S+
Sbjct: 507 EAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGLVSK 553



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 116/467 (24%), Positives = 214/467 (45%), Gaps = 51/467 (10%)

Query: 81  MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSD 140
           M   P   ++  L+  L  +    + + L + +   G  P+ V+  +L+   CK  G   
Sbjct: 136 MPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQ 195

Query: 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200
           A   L  +  K  +P++VT   +I G+C +G+  +A  L  +  ++ C+P+ +     Y 
Sbjct: 196 AMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVS----YT 251

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL 260
           +++ GLC     + V  LF +M  +   P+   ++ LIR +C         G    A+++
Sbjct: 252 TLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFC-------RGGMVERAIQV 304

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
            ++           C  +      +INS+CK   VD A +   +M S G  PD + Y+++
Sbjct: 305 LQQMTEHE------CATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTV 358

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM----I 376
           + G C   R +DA++L   +    C P+  ++NT I    +   +E+A+ L  +M     
Sbjct: 359 LKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGC 418

Query: 377 SMGVRPDNSC---------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           ++GV   N+          I  A ELFR++     + +   +  L+ GLC + RL +A E
Sbjct: 419 TVGVVTYNALVNGFCVQGHIDSALELFRSM---PCKPNTITYTTLLTGLCNAERLDAAAE 475

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK----------------I 471
           L  ++      PNVVT+ V++   C +G +++A +L+  M E                  
Sbjct: 476 LVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGIT 535

Query: 472 RECLK--AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           ++C    A+ELLH +  + V PD IT S +  +L+K++   E + + 
Sbjct: 536 KDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQMF 582



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 168/352 (47%), Gaps = 33/352 (9%)

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           NI++N  CK   V DAF  L  +     +PD ++   +++GLC   ++ +A  L  + V 
Sbjct: 321 NIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMV- 379

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
              R N  PN + + + I  LC+ G + +  +L   M+  G       YN+L+  +C   
Sbjct: 380 ---RNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFC--- 433

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
                +G+  +ALEL            + C P+ ++Y +++  LC    +D A EL  +M
Sbjct: 434 ----VQGHIDSALELFR---------SMPCKPNTITYTTLLTGLCNAERLDAAAELVAEM 480

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
             R   P+VV ++ L++ +C  G +D+A +L   +   GC P+  +YNTL +  +K    
Sbjct: 481 LHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSS 540

Query: 366 EEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCL 412
           E+AL L   ++S GV PD                + EA ++F    +        V+N +
Sbjct: 541 EDALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKI 600

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           + GLCK   + +A +    +   G  PN  TY ++I GL  EG +++A DLL
Sbjct: 601 LLGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIILIEGLAREGLLKEAQDLL 652



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 162/327 (49%), Gaps = 33/327 (10%)

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN 213
           +PDV     LIR LC +G+ ++A+ +  +       P    +V  Y +++ G C+ G ++
Sbjct: 72  APDVYLCTKLIRNLCRRGRTSDAARVL-RAAEGSGSP---VDVFAYNTLVAGYCRYGHLD 127

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
             R L   M    + PDA+ Y  LIRV C        +G  + AL L ++ +        
Sbjct: 128 AARRLIGSMP---VAPDAYTYTPLIRVLC-------DRGRVADALSLLDDMLRRG----- 172

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
            C P+V++Y  ++ ++CK+   ++A  +  +M+++G  P++V Y+ +I+G C  GR+DDA
Sbjct: 173 -CQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDA 231

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---------- 383
           R L   + S GC PDT SY TL+      ++ ++   L+ EM+     P+          
Sbjct: 232 RDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRF 291

Query: 384 ---NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
                 +  A ++ + +   +   + T+ N +++ +CK  R+  A++    +  YG  P+
Sbjct: 292 FCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPD 351

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDM 467
            ++YT ++ GLC       A +LL +M
Sbjct: 352 TISYTTVLKGLCRAERWNDAKELLKEM 378



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 145/316 (45%), Gaps = 20/316 (6%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           NDA      M+     P   +FN+ +  L  K      I L E++   G     V+ N L
Sbjct: 369 NDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNAL 428

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           +N FC + G  D+ + L R +     P+ +T   L+ GLC   +   A+ L  + +  DC
Sbjct: 429 VNGFC-VQGHIDSALELFRSMP--CKPNTITYTTLLTGLCNAERLDAAAELVAEMLHRDC 485

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
            PNV+     +  +++  C+ GF+++   L   M   G  P+   YN+L        + E
Sbjct: 486 PPNVVT----FNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSE 541

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
           DA            E ++G    GV   PDV+++ SII  L K+  V++A ++F   +  
Sbjct: 542 DAL-----------ELLHGLVSKGV--SPDVITFSSIIGILSKEDRVEEAIQMFHLAQDI 588

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G+ P  +VY+ ++ G C    ID+A      + S GC+P+ S+Y  LI   ++   ++EA
Sbjct: 589 GMRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIILIEGLAREGLLKEA 648

Query: 369 LSLYGEMISMGVRPDN 384
             L   + S GV   N
Sbjct: 649 QDLLSMLCSRGVVSKN 664



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 122/281 (43%), Gaps = 39/281 (13%)

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
           PNV PN    A +   + ++      R++ L     G  PD ++   LIR  C       
Sbjct: 35  PNVAPNP-ASARLRRLIAREDLAGAARLVELSASRDGEAPDVYLCTKLIRNLC------- 86

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
            +G TS A  +      G+G        DV +Y +++   C+   +D A+ L   M    
Sbjct: 87  RRGRTSDAARVLRA-AEGSGS-----PVDVFAYNTLVAGYCRYGHLDAARRLIGSMP--- 137

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
           + PD   Y+ LI   C  GR+ DA  L   +   GC P+  +Y  L+ +  K    E+A+
Sbjct: 138 VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAM 197

Query: 370 SLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
           ++  EM + G  P                      ++  +N +++G+C+  R+  A +L 
Sbjct: 198 AVLDEMRAKGCTP----------------------NIVTYNVIINGMCREGRVDDARDLL 235

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            +L  YG +P+ V+YT ++ GLC     +   +L  +M EK
Sbjct: 236 NRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEK 276


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 134/474 (28%), Positives = 214/474 (45%), Gaps = 37/474 (7%)

Query: 12  AFKVKPSSSLRNSKKPISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDA 71
           +F ++  S  + S+   +L   N  SS     ++ V   T +  +  EN K+   EL   
Sbjct: 148 SFTIRMKSFCKTSRPHAALRLLNNMSS-QGCEMNVVAYCTVVGGFYEENFKAEGYEL--- 203

Query: 72  LCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131
              F  M+    +  + +FN LL  L  K        L +++   G+LP+  + N+ +  
Sbjct: 204 ---FGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQG 260

Query: 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
            C+   +  A   +G ++ +   PDV+T   LI GLC   KF EA     K V       
Sbjct: 261 LCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMV----NEG 316

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
           + P+   Y ++I G CK G V     +  D    G  PD F Y SLI   C        +
Sbjct: 317 LEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLC-------HE 369

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
           G T+ AL L  E       LG    P+V+ Y ++I  L    ++ +A +L  +M  +G+I
Sbjct: 370 GETNRALALFNE------ALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLI 423

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           P+V  ++ L++G C MG + DA  L   + S+G  PD  ++N LI+ YS   K+E AL +
Sbjct: 424 PEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEI 483

Query: 372 YGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
              M+  GV PD              S   +  E ++T+       +L  FN L++ LC+
Sbjct: 484 LDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCR 543

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIR 472
             +L  A  L +++      P+ VT+  +I G C  G ++ AY L   MEE  +
Sbjct: 544 YRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYK 597



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 111/450 (24%), Positives = 199/450 (44%), Gaps = 60/450 (13%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLL-GALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
           EL+ A+     +I   P P + ++N+L+ G     K+    + L + +N  GL PD  + 
Sbjct: 266 ELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNE-GLEPDSYTY 324

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           N L+  +CK   V  A   +G  +   F PD  T   LI GLC +G+   A  LF + + 
Sbjct: 325 NTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALG 384

Query: 186 FDCRPNVI-------------------------------PNVICYASIIDGLCKDGFVNK 214
              +PNVI                               P V  +  +++GLCK G V+ 
Sbjct: 385 KGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSD 444

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
              L   M  +G +PD F +N LI  Y   +  E+A       LE+ +  ++ NG     
Sbjct: 445 ADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENA-------LEILDVMLD-NG----- 491

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
             PDV +Y S++N LCK    +   E +  M  +G  P++  ++ L++  C   ++D+A 
Sbjct: 492 VDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEAL 551

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM--------------ISMGV 380
            L   ++++   PD  ++ TLI+ + K   ++ A +L+ +M              I +  
Sbjct: 552 GLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHA 611

Query: 381 RPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
             +   +  A +LF+ + +     D   +  +VDG CK+  +   ++   ++   G  P+
Sbjct: 612 FTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPS 671

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           + T   +I  LC+E  + +A  ++  M +K
Sbjct: 672 LTTLGRVINCLCVEDRVYEAAGIIHRMVQK 701



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 149/351 (42%), Gaps = 69/351 (19%)

Query: 170 QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYP 229
           +GK  EA  +F +   +DC P V      Y +I+  L   G+ ++   +++ M+ RGI P
Sbjct: 89  KGKVQEAVNVFERMDFYDCEPTVFS----YNAIMSVLVDSGYFDQAHKVYMRMRDRGITP 144

Query: 230 DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS- 288
           D + +   ++ +C             AAL L    +N     G  C  +V++YC+++   
Sbjct: 145 DVYSFTIRMKSFC-------KTSRPHAALRL----LNNMSSQG--CEMNVVAYCTVVGGF 191

Query: 289 ----------------------------------LCKDVLVDKAKELFLDMKSRGIIPDV 314
                                             LCK   V + ++L   +  RG++P++
Sbjct: 192 YEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNL 251

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
             Y+  I G C  G +D A ++   +  +G  PD  +YN LI    K  K +EA    G+
Sbjct: 252 FTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGK 311

Query: 375 MISMGVRPDN------------SCILEAAELFRTLHNTKFEL---DLTVFNCLVDGLCKS 419
           M++ G+ PD+              +++ AE  R + +  F     D   +  L+DGLC  
Sbjct: 312 MVNEGLEPDSYTYNTLIAGYCKGGMVQLAE--RIVGDAVFNGFVPDQFTYRSLIDGLCHE 369

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
                A  LF +    G +PNV+ Y  +I GL  +G I +A  L  +M EK
Sbjct: 370 GETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEK 420



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 153/355 (43%), Gaps = 53/355 (14%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E E N AL  FN  +     P +  +N+L+  L+ +   +    L+  ++  GL+P+  +
Sbjct: 369 EGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQT 428

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            NIL+N  CKM  VSDA   +  ++ K + PD+ T   LI G   Q K   A  +    V
Sbjct: 429 FNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILD--V 486

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
             D    V P+V  Y S+++GLCK      V   +  M  +G  P+ F +N L+   C  
Sbjct: 487 MLD--NGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRY 544

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA------ 298
              ++A G       L EE  N +       +PD +++ ++I+  CK+  +D A      
Sbjct: 545 RKLDEALG-------LLEEMKNKS------VNPDAVTFGTLIDGFCKNGDLDGAYTLFRK 591

Query: 299 ------------------------------KELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                                         ++LF +M  R + PD   Y  ++DG+C  G
Sbjct: 592 MEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTG 651

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            ++   K  + +   G IP  ++   +IN     ++V EA  +   M+  G+ P+
Sbjct: 652 NVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPE 706



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 129/288 (44%), Gaps = 37/288 (12%)

Query: 199 YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR-VYCCAVNWEDAKGNTSAA 257
           Y S+I+ L   G    +  + +DM+         V N ++  VY  A+     KG    A
Sbjct: 43  YRSVIEKLGYYGKFEAMEEVLVDMREN-------VGNHMLEGVYVGAMKNYGRKGKVQEA 95

Query: 258 LELHE--EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV 315
           + + E  +F +        C P V SY +I++ L      D+A ++++ M+ RGI PDV 
Sbjct: 96  VNVFERMDFYD--------CEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVY 147

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
            ++  +  +C   R   A +L  ++ S+GC  +  +Y T++  + +     E   L+G+M
Sbjct: 148 SFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKM 207

Query: 376 ISMGVRPDNSCILEAAELFRTL------HNTKFELD----------LTVFNCLVDGLCKS 419
           ++ GV   + C+    +L R L         +  LD          L  +N  + GLC+ 
Sbjct: 208 LASGV---SLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQR 264

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
             L  A  +   L   GP+P+V+TY  +I GLC     ++A   L  M
Sbjct: 265 GELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKM 312



 Score = 42.4 bits (98), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 1/111 (0%)

Query: 88  PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGR 147
           P++N ++ A   K        L + +    L PD  +  ++++ FCK   V+  +  L  
Sbjct: 603 PTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLE 662

Query: 148 ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVIC 198
           ++   F P + TLG +I  LC++ +  EA+G+  + V     P  + N IC
Sbjct: 663 MMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPEAV-NTIC 712


>gi|357498969|ref|XP_003619773.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494788|gb|AES75991.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 452

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 122/430 (28%), Positives = 200/430 (46%), Gaps = 62/430 (14%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKM------I 136
           PTP +  F  +  +L    ++   I LS ++   G+  D V+LNIL+NCFC +       
Sbjct: 4   PTPTIFEFGKIFASLVKINHFHTVISLSHQMELRGIQTDLVNLNILVNCFCHLGQVCLND 63

Query: 137 GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNV 196
            V +       ++ K F  + V+ G LI GLC  G+   A  +         +PNV+   
Sbjct: 64  KVKETLHFHDDVIAKGFQLNQVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVV--- 120

Query: 197 ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSA 256
             Y++II  LCKD  V     L+  M  + I PD   YN+L+  Y C +      G    
Sbjct: 121 -MYSTIIYSLCKDKLVIDAFDLYSQMLLKRISPDVITYNTLM--YGCLI-----VGRLKE 172

Query: 257 ALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV 316
           A+ L  + +  N        PD+ ++  +++ LCK+  + KA+ +   M  + + PDV+ 
Sbjct: 173 AVGLFNQMLLKN------IKPDIYTFNILVDGLCKEGEMKKARNVLAVMIKQSVDPDVIT 226

Query: 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
           Y+SL+DGY L+ + + A  +F ++   G  PD  SY+ +IN   K + V+EA++L  EM 
Sbjct: 227 YNSLMDGYFLVKQENKATFVFNTMARRGVTPDVHSYSVMINGLCKTKMVDEAVNLLKEMH 286

Query: 377 SMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
           S  + P+                         ++ L+DGL KS R+  AW+L  ++   G
Sbjct: 287 SKSMAPNT----------------------VTYSSLIDGLHKSGRIFDAWDLVNEMHNRG 324

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITV 496
              +V+TY  ++  LC                 K  +  KAI LL K+  + ++PD  T 
Sbjct: 325 QPADVITYNSLLDALC-----------------KNHQVDKAITLLTKIKDQGIQPDIYTY 367

Query: 497 SILEELLNKD 506
           +IL + L K+
Sbjct: 368 TILVDGLCKN 377



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 118/378 (31%), Positives = 179/378 (47%), Gaps = 64/378 (16%)

Query: 114 NTIGLL--PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           N  GLL  P+ V  + ++   CK   V DAF    ++L K  SPDV+T   L+ G  + G
Sbjct: 109 NIDGLLVQPNVVMYSTIIYSLCKDKLVIDAFDLYSQMLLKRISPDVITYNTLMYGCLIVG 168

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
           +  EA GLF + +      N+ P++  +  ++DGLCK+G + K R +   M  + + PD 
Sbjct: 169 RLKEAVGLFNQMLL----KNIKPDIYTFNILVDGLCKEGEMKKARNVLAVMIKQSVDPDV 224

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV-NGNGELGVICHPDVLSYCSIINSLC 290
             YNSL+  Y        A             FV N     GV   PDV SY  +IN LC
Sbjct: 225 ITYNSLMDGYFLVKQENKA------------TFVFNTMARRGVT--PDVHSYSVMINGLC 270

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K  +VD+A  L  +M S+ + P+ V YSSLIDG    GRI DA  L   + + G   D  
Sbjct: 271 KTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKSGRIFDAWDLVNEMHNRGQPADVI 330

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFN 410
           +YN+L+++  K  +V++A++L  ++   G++P                      D+  + 
Sbjct: 331 TYNSLLDALCKNHQVDKAITLLTKIKDQGIQP----------------------DIYTYT 368

Query: 411 CLVDGLCKSWRLRSAWELFK---------------------KLPRYGPEPNVVTYTVMIC 449
            LVDGLCK+ RL+ A E+++                     K+   G  PN VT+ ++I 
Sbjct: 369 ILVDGLCKNGRLKDAQEVYQILLIKGYHLDSLFDKALSLLSKMEDNGCTPNPVTFEILIR 428

Query: 450 GLCIEGGIEKAYDLLPDM 467
            L      +KA +LL +M
Sbjct: 429 ALFENDMNDKAVELLREM 446



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 155/332 (46%), Gaps = 38/332 (11%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DA   ++ M+  + +P + ++N+L+            + L  ++    + PD  + NIL+
Sbjct: 137 DAFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKNIKPDIYTFNILV 196

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           +  CK   +  A   L  ++++   PDV+T   L+ G  +  +  +A+ +F        R
Sbjct: 197 DGLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTM----AR 252

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
             V P+V  Y+ +I+GLCK   V++   L  +M  + + P+   Y+SLI       +   
Sbjct: 253 RGVTPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLI-------DGLH 305

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
             G    A +L  E  N           DV++Y S++++LCK+  VDKA  L   +K +G
Sbjct: 306 KSGRIFDAWDLVNEMHNRGQP------ADVITYNSLLDALCKNHQVDKAITLLTKIKDQG 359

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARK---------------------LFVSIESEGCIPD 348
           I PD+  Y+ L+DG C  GR+ DA++                     L   +E  GC P+
Sbjct: 360 IQPDIYTYTILVDGLCKNGRLKDAQEVYQILLIKGYHLDSLFDKALSLLSKMEDNGCTPN 419

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
             ++  LI +  + +  ++A+ L  EMI+ G+
Sbjct: 420 PVTFEILIRALFENDMNDKAVELLREMIARGL 451



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 120/260 (46%), Gaps = 22/260 (8%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGA--LAGKKYYVNFICLSERLNTI---GLL 119
           E E+  A      MI     P + ++NSL+    L  ++    F+      NT+   G+ 
Sbjct: 202 EGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFV-----FNTMARRGVT 256

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD  S ++++N  CK   V +A   L  +  K  +P+ VT   LI GL   G+  +A  L
Sbjct: 257 PDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKSGRIFDAWDL 316

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             + +    +P    +VI Y S++D LCK+  V+K   L   +K +GI PD + Y  L+ 
Sbjct: 317 VNE-MHNRGQP---ADVITYNSLLDALCKNHQVDKAITLLTKIKDQGIQPDIYTYTILVD 372

Query: 240 VYCCAVNWEDAKGNTSAAL----ELHEEFVNGNGELGVI----CHPDVLSYCSIINSLCK 291
             C     +DA+      L     L   F      L  +    C P+ +++  +I +L +
Sbjct: 373 GLCKNGRLKDAQEVYQILLIKGYHLDSLFDKALSLLSKMEDNGCTPNPVTFEILIRALFE 432

Query: 292 DVLVDKAKELFLDMKSRGII 311
           + + DKA EL  +M +RG++
Sbjct: 433 NDMNDKAVELLREMIARGLL 452


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 113/383 (29%), Positives = 179/383 (46%), Gaps = 56/383 (14%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL P+    N+LM    ++  ++ A      +  +     VV+   +I G+C  G    A
Sbjct: 235 GLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGA 294

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L  +         V P+V  Y ++I GLC+ G +   R +F  M GRG+ P+A V+  
Sbjct: 295 ETLHRRM----SEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTI 350

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI  +C        KG+    LELH E      E GV   PD ++Y +I+N LC+   + 
Sbjct: 351 LIDAHC-------KKGDAETMLELHREMR----ERGV--RPDAVTYNAIVNGLCRARDLK 397

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A  + ++M+S G+ PD V Y++LIDGYC    +D A ++  ++ +EG   D  +Y  LI
Sbjct: 398 SASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALI 457

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           +  SK  +  +A  + GEM+  G+ PDN                      T +  ++D  
Sbjct: 458 SGLSKAGRSADAERVLGEMMEAGLEPDN----------------------TTYTMVIDAF 495

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLK 476
           C+   +++   L K++   G +P VVTY V++ G C  G ++ A     DM         
Sbjct: 496 CRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNA-----DM--------- 541

Query: 477 AIELLHKMAKRYVKPDEITVSIL 499
              LL+ M    V PD+IT +IL
Sbjct: 542 ---LLNAMINIGVSPDDITYNIL 561



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 183/404 (45%), Gaps = 45/404 (11%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           +A  F+  ++     P    FN L+  L       +   + + + + G+    VS N ++
Sbjct: 223 EACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMI 282

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           +  C+   +  A     R+     +PDV T G LI+GLC  G+  +A G+F K     C 
Sbjct: 283 SGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKM----CG 338

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
             + PN + +  +ID  CK G    +  L  +M+ RG+ PDA  YN+++   C A + + 
Sbjct: 339 RGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKS 398

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
           A G     +E+    +           PD ++Y ++I+  CK+  +D A E+  +M + G
Sbjct: 399 ASG---IVVEMRSAGLR----------PDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEG 445

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
           +  D V Y++LI G    GR  DA ++   +   G  PD ++Y  +I+++ +   V+  L
Sbjct: 446 VGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGL 505

Query: 370 SLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
            L  EM + G +P                       +  +N +++G CK  ++++A  L 
Sbjct: 506 RLLKEMQNKGRKP----------------------GVVTYNVIMNGFCKLGQMKNADMLL 543

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGI------EKAYDLLPDM 467
             +   G  P+ +TY +++ G C  G +      + A   +PD+
Sbjct: 544 NAMINIGVSPDDITYNILLDGHCKHGKVTDIEELKSAKGTVPDL 587



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 68/313 (21%), Positives = 122/313 (38%), Gaps = 66/313 (21%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L+ A      M     TP + ++ +L+  L       +   + E++   G+ P+ V   
Sbjct: 290 DLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFT 349

Query: 127 ILMNCFCKMIGVSDAFVALGRILR-KVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           IL++  CK  G ++  + L R +R +   PD VT   ++ GLC       ASG+  +  +
Sbjct: 350 ILIDAHCKK-GDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRS 408

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
              RP+ +     Y ++IDG CK+  ++    +  +M   G+  D   Y +LI     A 
Sbjct: 409 AGLRPDTV----TYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAG 464

Query: 246 NWEDA----------------------------KGNTSAALELHEEFVNGNGELGVICH- 276
              DA                            KG+    L L +E  N   + GV+ + 
Sbjct: 465 RSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYN 524

Query: 277 ----------------------------PDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
                                       PD ++Y  +++  CK   V   +EL     ++
Sbjct: 525 VIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEEL---KSAK 581

Query: 309 GIIPDVVVYSSLI 321
           G +PD+ VY+S++
Sbjct: 582 GTVPDLGVYTSIV 594


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 130/535 (24%), Positives = 224/535 (41%), Gaps = 93/535 (17%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           + DAL   + M      P  P ++ +L A      + N + + E ++  G   D  + N+
Sbjct: 127 IADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNL 186

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++N  C+   V +A   L ++       D+V+   +++GLCM  ++ +   L  + V  D
Sbjct: 187 VLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVD 246

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
           C PN++                               P++  YA+IIDG+CK+G +    
Sbjct: 247 CAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVAN 306

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE-----------LHEEFV 265
            +   M   G+ P+   YN++++  C A  W++A+   S   +           +  +F 
Sbjct: 307 EILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFF 366

Query: 266 NGNGELGVI-----------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
             NG +  +           C PDV++Y ++IN  CK+ L+D+A  L   M S G  P+ 
Sbjct: 367 CQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNT 426

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           V Y+ ++ G C  GR  DA +L   +  +GC P+  ++NTLIN   K   VE+A+ L  +
Sbjct: 427 VSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQ 486

Query: 375 MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
           M+  G  P                      DL  ++ ++DGL K+ +   A EL   +  
Sbjct: 487 MLVNGCSP----------------------DLISYSTVIDGLGKAGKTEEALELLNVMVN 524

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLK 476
            G  PN + Y+ + C L  EG + K   +  ++++                  K  E  +
Sbjct: 525 KGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDR 584

Query: 477 AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLTR 531
           AI+    M      P+E T ++L + L  +    E   LL    SR      L R
Sbjct: 585 AIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRGALRKHLMR 639



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 107/428 (25%), Positives = 180/428 (42%), Gaps = 83/428 (19%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD-GFVN 213
           P+  T   ++RGLC +G+  +A  +  +     C P  IP +  Y  I++  C+  GF N
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAP--IPPM--YHVILEAACRSGGFRN 164

Query: 214 KVRVL-FLDMKG---------------------------------RGIYPDAFVYNSLIR 239
            VRVL  +  KG                                  G   D   YN++++
Sbjct: 165 SVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLK 224

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C A  W D +       EL +E V       V C P+++++ ++I  LC++ L ++  
Sbjct: 225 GLCMAKRWGDVE-------ELMDEMVR------VDCAPNIVTFNTLIGYLCRNGLFERVH 271

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           E+   M   G  PD+ +Y+++IDG C  G ++ A ++   + S G  P+   YNT++   
Sbjct: 272 EVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGL 331

Query: 360 SKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDL 406
              E+ +EA  L  EM       D             N  +    EL   + +     D+
Sbjct: 332 CSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDV 391

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             +  +++G CK   +  A  L K +   G +PN V+YT+++ GLC  G    A +L+  
Sbjct: 392 ITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQ 451

Query: 467 MEEK----------------IRECL--KAIELLHKMAKRYVKPDEITVSILEELLNKDEN 508
           M ++                 ++ L  +AIELL +M      PD I+ S + + L K   
Sbjct: 452 MIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGK 511

Query: 509 CHECMNLL 516
             E + LL
Sbjct: 512 TEEALELL 519



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 155/382 (40%), Gaps = 53/382 (13%)

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA- 250
           V PN   +  ++ GLC  G +     +  +M  +G  P   +Y+ ++   C +  + ++ 
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 251 --------------KGNTSAALELHEEFVNGNGELGVI-------CHPDVLSYCSIINSL 289
                          GN +  L    E    +  +G++       C  D++SY +++  L
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
           C        +EL  +M      P++V +++LI   C  G  +   ++   +   GC PD 
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDI 286

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI-------------LEAAELFRT 396
             Y T+I+   K   +E A  +   M S G++P+  C               EA EL   
Sbjct: 287 RMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSE 346

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           +      LD   FN LVD  C++  +    EL +++  +G  P+V+TYT +I G C EG 
Sbjct: 347 MFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGL 406

Query: 457 IEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSI 498
           I++A  LL  M                         + A EL+ +M ++   P+ +T + 
Sbjct: 407 IDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNT 466

Query: 499 LEELLNKDENCHECMNLLPSFL 520
           L   L K     + + LL   L
Sbjct: 467 LINFLCKKGLVEQAIELLKQML 488


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 127/446 (28%), Positives = 210/446 (47%), Gaps = 47/446 (10%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
            P +P++N++L AL+          LS  L   G+ P+  + NIL+   C    + +A  
Sbjct: 115 APSVPAYNAVLLALSDASLPSARRFLSSMLRH-GVAPNVYTYNILVRALCARGRLEEAVG 173

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
            +G +     +P+ VT   L+   C  G+   A  + +         N  PN++ + S++
Sbjct: 174 VVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMRE---EGNAKPNLVTFNSMV 230

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
           +GLCK G +   R +F +M   G+ PD   YN+L+  YC         G    +L +  E
Sbjct: 231 NGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYC-------KVGCLHESLAVFSE 283

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
                 + G++  PDV+++ S+I++ CK   +++A  L   M+ RG+  + V +++LIDG
Sbjct: 284 MT----QRGLV--PDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDG 337

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           +C  G +DDA      +   G  P    YN LIN Y K+ +++ A  L  EM +  V+PD
Sbjct: 338 FCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPD 397

Query: 384 ---NSCIL----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
               S I+           A +L + +       D   ++ L+ GLC+  RL  A ELF+
Sbjct: 398 VVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFE 457

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVK 490
            + + G +P+  TYT +I G C EG +E                 KA+ L  +M ++ V 
Sbjct: 458 NMLQLGVQPDEFTYTTLIDGHCKEGNVE-----------------KALSLHDEMIRKGVL 500

Query: 491 PDEITVSILEELLNKDENCHECMNLL 516
           PD +T S+L   L+K     E   LL
Sbjct: 501 PDVVTYSVLINGLSKSARTKEAHRLL 526



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 118/401 (29%), Positives = 185/401 (46%), Gaps = 54/401 (13%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + +FNS++  L           + + +   GL PD VS N L++ +CK+  + ++   
Sbjct: 221 PNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAV 280

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
              + ++   PDVVT   LI   C  G   +A  L  +      R N +     + ++ID
Sbjct: 281 FSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVT----FTALID 336

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           G CK GF++   +   +M+  GI P    YN+LI  YC         G    A EL  E 
Sbjct: 337 GFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYC-------KLGRMDLARELIREM 389

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
                       PDV++Y +II+  CK   +D A +L   M  +G++PD + YSSLI G 
Sbjct: 390 EAKR------VKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGL 443

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           C   R++DA +LF ++   G  PD  +Y TLI+ + K   VE+ALSL+ EMI  GV P  
Sbjct: 444 CEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLP-- 501

Query: 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
                               D+  ++ L++GL KS R + A  L  KL    P P+ + Y
Sbjct: 502 --------------------DVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKY 541

Query: 445 -TVMIC--------------GLCIEGGIEKAYDLLPDMEEK 470
             +M+C              G C++G +++A  +   M ++
Sbjct: 542 DALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDR 582



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 116/400 (29%), Positives = 195/400 (48%), Gaps = 24/400 (6%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+++L  F+ M      P + +F SL+ A          + L  ++   GL  + V+   
Sbjct: 274 LHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTA 333

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++ FCK   + DA +A+  + +    P VV    LI G C  G+   A  L  +  A  
Sbjct: 334 LIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEA-- 391

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               V P+V+ Y++II G CK G ++    L   M  +G+ PDA  Y+SLIR  C     
Sbjct: 392 --KRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRL 449

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
            D       A EL E  +    +LGV   PD  +Y ++I+  CK+  V+KA  L  +M  
Sbjct: 450 ND-------ACELFENML----QLGV--QPDEFTYTTLIDGHCKEGNVEKALSLHDEMIR 496

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           +G++PDVV YS LI+G     R  +A +L   +  E  +PD   Y+ L+   SK E  + 
Sbjct: 497 KGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAE-FKS 555

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
            ++L       G+      + EA ++++++ +  ++LD +V++ L+ G C+   +R A  
Sbjct: 556 VVALLKGFCMKGL------MKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALS 609

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
             K++ R G  PN  +   ++ GL  EG + +A + + D+
Sbjct: 610 FHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDL 649



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 110/286 (38%), Gaps = 37/286 (12%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  LNDA   F  M+ +   P   ++ +L+     +      + L + +   G+LPD V+
Sbjct: 446 EKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVT 505

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            ++L+N   K     +A   L ++  +   PD +    L+  LC                
Sbjct: 506 YSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALM--LC---------------- 547

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
              C      +V+   +++ G C  G + +   ++  M  R    D  VY+ LI  +C  
Sbjct: 548 ---CSKAEFKSVV---ALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHC-- 599

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                  GN   AL  H++ +           P+  S  S++  L ++ +V +A     D
Sbjct: 600 -----RGGNVRKALSFHKQMLRSG------FSPNSTSTISLVRGLFEEGMVVEADNAIQD 648

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           + +   + D     +LID     G +D    +   +  +G +P + 
Sbjct: 649 LLTCCPLADAEASKALIDLNRKEGNVDALIDVLCGMARDGLLPSSG 694


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 127/446 (28%), Positives = 210/446 (47%), Gaps = 47/446 (10%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
            P +P++N++L AL+          LS  L   G+ P+  + NIL+   C    + +A  
Sbjct: 115 APSVPAYNAVLLALSDASLPSARRFLSSMLRH-GVAPNVYTYNILVRALCARGRLEEAVG 173

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
            +G +     +P+ VT   L+   C  G+   A  + +         N  PN++ + S++
Sbjct: 174 VVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMRE---EGNAKPNLVTFNSMV 230

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
           +GLCK G +   R +F +M   G+ PD   YN+L+  YC         G    +L +  E
Sbjct: 231 NGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYC-------KVGCLHESLAVFSE 283

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
                 + G++  PDV+++ S+I++ CK   +++A  L   M+ RG+  + V +++LIDG
Sbjct: 284 MT----QRGLV--PDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDG 337

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           +C  G +DDA      +   G  P    YN LIN Y K+ +++ A  L  EM +  V+PD
Sbjct: 338 FCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPD 397

Query: 384 ---NSCIL----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
               S I+           A +L + +       D   ++ L+ GLC+  RL  A ELF+
Sbjct: 398 VVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFE 457

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVK 490
            + + G +P+  TYT +I G C EG +E                 KA+ L  +M ++ V 
Sbjct: 458 NMLQLGVQPDEFTYTTLIDGHCKEGNVE-----------------KALSLHDEMIRKGVL 500

Query: 491 PDEITVSILEELLNKDENCHECMNLL 516
           PD +T S+L   L+K     E   LL
Sbjct: 501 PDVVTYSVLINGLSKSARTKEAHRLL 526



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 118/401 (29%), Positives = 185/401 (46%), Gaps = 54/401 (13%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + +FNS++  L           + + +   GL PD VS N L++ +CK+  + ++   
Sbjct: 221 PNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAV 280

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
              + ++   PDVVT   LI   C  G   +A  L  +      R N +     + ++ID
Sbjct: 281 FSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVT----FTALID 336

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           G CK GF++   +   +M+  GI P    YN+LI  YC         G    A EL  E 
Sbjct: 337 GFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYC-------KLGRMDLARELIREM 389

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
                       PDV++Y +II+  CK   +D A +L   M  +G++PD + YSSLI G 
Sbjct: 390 EAKR------VKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGL 443

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           C   R++DA +LF ++   G  PD  +Y TLI+ + K   VE+ALSL+ EMI  GV P  
Sbjct: 444 CEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLP-- 501

Query: 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
                               D+  ++ L++GL KS R + A  L  KL    P P+ + Y
Sbjct: 502 --------------------DVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKY 541

Query: 445 -TVMIC--------------GLCIEGGIEKAYDLLPDMEEK 470
             +M+C              G C++G +++A  +   M ++
Sbjct: 542 DALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDR 582



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 117/400 (29%), Positives = 198/400 (49%), Gaps = 24/400 (6%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+++L  F+ M      P + +F SL+ A          + L  ++   GL  + V+   
Sbjct: 274 LHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTA 333

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++ FCK   + DA +A+  + +    P VV    LI G C  G+   A  L  +  A  
Sbjct: 334 LIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEA-- 391

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               V P+V+ Y++II G CK G ++    L   M  +G+ PDA  Y+SLIR  C     
Sbjct: 392 --KRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLC----- 444

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           E+ + N   A EL E  +    +LGV   PD  +Y ++I+  CK+  V+KA  L  +M  
Sbjct: 445 EEKRLND--ACELFENML----QLGV--QPDEFTYTTLIDGHCKEGNVEKALSLHDEMIR 496

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           +G++PDVV YS LI+G     R  +A +L   +  E  +PD   Y+ L+   SK E  + 
Sbjct: 497 KGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAE-FKS 555

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
            ++L       G+      + EA ++++++ +  ++LD +V++ L+ G C+   +R A  
Sbjct: 556 VVALLKGFCMKGL------MKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALS 609

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
             K++ R G  PN  +   ++ GL  EG + +A + + D+
Sbjct: 610 FHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDL 649



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 79/194 (40%), Gaps = 27/194 (13%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  LNDA   F  M+ +   P   ++ +L+     +      + L + +   G+LPD V+
Sbjct: 446 EKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVT 505

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVV-------------------TLGCLIR 165
            ++L+N   K     +A     R+L K++  D V                   ++  L++
Sbjct: 506 YSVLINGLSKSARTKEAH----RLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLK 561

Query: 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225
           G CM+G   EA  ++   +      N   +   Y+ +I G C+ G V K       M   
Sbjct: 562 GFCMKGLMKEADKVYQSML----DRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRS 617

Query: 226 GIYPDAFVYNSLIR 239
           G  P++    SL+R
Sbjct: 618 GFSPNSTSTISLVR 631


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 128/454 (28%), Positives = 213/454 (46%), Gaps = 35/454 (7%)

Query: 56  YLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNT 115
           Y+S   K G+ +  +A  FF+ M      P + +++ LL   A + Y V+ + L   +  
Sbjct: 338 YMSSLCKHGKSK--EAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEG 395

Query: 116 IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
            G++ D    NIL++ + K   + +A +   ++  +   PD  T G +I      G+  +
Sbjct: 396 NGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLAD 455

Query: 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI-YPDAFVY 234
           A   F + +A   +P+ I     Y S+I G C  G + K + L  +M  RGI  P+   +
Sbjct: 456 AMDKFNQMIAMGLKPDTI----VYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFF 511

Query: 235 NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294
           NS+I   C        +G    A ++ +  ++  GE      PDV+++ S+I+       
Sbjct: 512 NSIINSLC-------KEGRVVEAQDIFDLVIH-IGE-----RPDVITFNSLIDGYGLVGK 558

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           ++KA  +   M S GI PDVV YS+L+DGYC  GRIDD   LF  + S+G  P T +Y  
Sbjct: 559 MEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGI 618

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTK 401
           +++      +   A  +  EMI  G   D             N+C  EA  LF+ L    
Sbjct: 619 ILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMN 678

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
            + ++ + N ++D + K  +   A ELF  +   G  PN  TY VMI  L  EG +E+A 
Sbjct: 679 VKFNIAIINTMIDAMYKVRKREEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEAD 738

Query: 462 DLLPDMEEKIRECLKAIELLHKMAKRYVKPDEIT 495
           ++   ME+    C  +  LL+ + +  ++  EI+
Sbjct: 739 NMFSLMEKS--GCAPSSRLLNNIIRVLLEKGEIS 770



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 124/456 (27%), Positives = 211/456 (46%), Gaps = 51/456 (11%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVF--SPDVVTLGCLIRG 166
           L  R+  +G+ PD +S + ++   C+      A   L  +++K    SP+VV+   +I G
Sbjct: 177 LLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIHG 236

Query: 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
              +G+ ++A  LF + +    +  V+P+V+ Y+S ID LCK   ++K  ++   M   G
Sbjct: 237 FFREGEVSKACNLFHEMM----QQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNG 292

Query: 227 IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII 286
             PD   YN +I  Y     W++  G       +  E        G++  PD+ +  S +
Sbjct: 293 FEPDKVTYNCMIHGYSILGQWKETAG-------MFREMT----RRGLM--PDIFTCNSYM 339

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           +SLCK     +A E F  M ++G  PD+V YS L+ GY   G + D   LF S+E  G +
Sbjct: 340 SSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIV 399

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN-------------SCILEAAEL 393
            D S YN LI++Y K   ++EA+ ++ +M   GV PD                + +A + 
Sbjct: 400 ADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDK 459

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG-PEPNVVTYTVMICGLC 452
           F  +     + D  V+N L+ G C    L  A EL  ++   G P PN V +  +I  LC
Sbjct: 460 FNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLC 519

Query: 453 IEGGIEKA---YDLLPDMEEK---------------IRECLKAIELLHKMAKRYVKPDEI 494
            EG + +A   +DL+  + E+               + +  KA  +L  M    ++PD +
Sbjct: 520 KEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVV 579

Query: 495 TVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           T S L +   ++    + + L    LS+  + + +T
Sbjct: 580 TYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTIT 615



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 123/473 (26%), Positives = 195/473 (41%), Gaps = 111/473 (23%)

Query: 58  SENSKSGEVELNDALCFFNYMIHMQPTPFMP--SFNSLLGALA----------GKKYYV- 104
           +E  ++G +   D    F+ ++  Q TP +P  + N  L ALA          G    V 
Sbjct: 43  TERVRAGTLSTEDTHHLFDELLR-QTTP-VPERALNGFLTALARAPSSATCRDGPSLAVA 100

Query: 105 --NFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGC 162
             N IC  E    + L P   + NILM+C C+    +  F   GR L+     DV+    
Sbjct: 101 LFNRICREEARPRVAL-PTVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANI 159

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           L++ LC   +  +A                                      V VL   M
Sbjct: 160 LLKCLCHAKRSDDA--------------------------------------VNVLLHRM 181

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
              G+ PD   Y+++++  C     ED++  +  AL+L    V  +G     C P+V+SY
Sbjct: 182 PELGVEPDTISYSTVLKSLC-----EDSR--SQRALDLLHTMVKKSGG----CSPNVVSY 230

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
            ++I+   ++  V KA  LF +M  +G++PDVV YSS ID  C    +D A  +   + S
Sbjct: 231 NTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMIS 290

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF 402
            G  PD  +YN +I+ YS + + +E   ++ EM   G+ PD                   
Sbjct: 291 NGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPD------------------- 331

Query: 403 ELDLTVFNC--LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG----- 455
                +F C   +  LCK  + + A E F  +   G +P++VTY+V++ G   EG     
Sbjct: 332 -----IFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDM 386

Query: 456 ----------GI---EKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEIT 495
                     GI      Y++L D   K     +A+ +  +M +R V PD  T
Sbjct: 387 LNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWT 439


>gi|6633861|gb|AAF19720.1|AC008047_27 F2K11.2 [Arabidopsis thaliana]
          Length = 332

 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 165/321 (51%), Gaps = 41/321 (12%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI------PNVICYASIIDGLCK 208
           P+VVT   L+  LC +G+  EA  L  + V    +PN +       +V+   +I+D LCK
Sbjct: 8   PNVVTFNTLMNSLCREGRVLEALALVDRMVEEGHQPNAMGQSHIKADVVISTAIVDRLCK 67

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           DG     + LF +M  +GI+P+   YN +I  +C +  W DA       +E         
Sbjct: 68  DGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQ------- 120

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                  +PD++++ ++IN+  K+  V +A+E++ +M    I P  + Y+S+IDG+C   
Sbjct: 121 ------INPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQD 174

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL 388
           R+DDA+++  S+ S+GC PD  +++TLIN Y K ++V+  + ++ EM   G+        
Sbjct: 175 RVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGI-------- 226

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
                   + NT        +  L+ G C+   L +A +L  ++   G  P+ +T+  M+
Sbjct: 227 --------VANT------VTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCML 272

Query: 449 CGLCIEGGIEKAYDLLPDMEE 469
            GLC +  + KA+ +L D+++
Sbjct: 273 AGLCSKKELRKAFAILEDLQK 293



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 156/350 (44%), Gaps = 49/350 (14%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSP----------DVVTLGCLIRG 166
           G  P+ V+ N LMN  C+   V +A   + R++ +   P          DVV    ++  
Sbjct: 5   GCRPNVVTFNTLMNSLCREGRVLEALALVDRMVEEGHQPNAMGQSHIKADVVISTAIVDR 64

Query: 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
           LC  G    A  LFT+         + PNV+ Y  +ID  C  G  +    L   M  + 
Sbjct: 65  LCKDGNHINAQNLFTEMH----EKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQ 120

Query: 227 IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII 286
           I PD   +++LI  +         +   S A E+++E +  +        P  ++Y S+I
Sbjct: 121 INPDIVTFSALINAFV-------KERKVSEAEEIYKEMLRWS------IFPTTITYNSMI 167

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           +  CK   VD AK +   M S+G  PDVV +S+LI+GYC   R+D+  ++F  +   G +
Sbjct: 168 DGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIV 227

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406
            +T +Y TLI+ + ++  ++ A  L  EMIS GV P                      D 
Sbjct: 228 ANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAP----------------------DY 265

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
             F+C++ GLC    LR A+ + + L +    P ++ +   +C   +  G
Sbjct: 266 ITFHCMLAGLCSKKELRKAFAILEDLQKSEVCPRLIFFLFSLCSFILGFG 315



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 118/251 (47%), Gaps = 58/251 (23%)

Query: 275 CHPDVLSYCSIINSLCKD-------VLVDK------------------------------ 297
           C P+V+++ +++NSLC++        LVD+                              
Sbjct: 6   CRPNVVTFNTLMNSLCREGRVLEALALVDRMVEEGHQPNAMGQSHIKADVVISTAIVDRL 65

Query: 298 --------AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
                   A+ LF +M  +GI P+V+ Y+ +ID +C  GR  DA +L   +  +   PD 
Sbjct: 66  CKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPDI 125

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC----ILEAAELFRT 396
            +++ LIN++ K  KV EA  +Y EM+   + P         D  C    + +A  +  +
Sbjct: 126 VTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDS 185

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           + +     D+  F+ L++G CK+ R+ +  E+F ++ R G   N VTYT +I G C  G 
Sbjct: 186 MASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGD 245

Query: 457 IEKAYDLLPDM 467
           ++ A DLL +M
Sbjct: 246 LDAAQDLLNEM 256



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 121/280 (43%), Gaps = 52/280 (18%)

Query: 103 YVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGC 162
           ++N   L   ++  G+ P+ ++ N +++ FC     SDA   L  ++ K  +PD+VT   
Sbjct: 71  HINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFSA 130

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           LI     + K +EA  ++ + +    R ++ P  I Y S+IDG CK   V+  + +   M
Sbjct: 131 LINAFVKERKVSEAEEIYKEML----RWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSM 186

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
             +G  PD   +++LI  YC                                        
Sbjct: 187 ASKGCSPDVVTFSTLINGYC---------------------------------------- 206

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
                   K   VD   E+F +M  RGI+ + V Y++LI G+C +G +D A+ L   + S
Sbjct: 207 --------KAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMIS 258

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
            G  PD  +++ ++      +++ +A ++  ++    V P
Sbjct: 259 CGVAPDYITFHCMLAGLCSKKELRKAFAILEDLQKSEVCP 298



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 30/197 (15%)

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFE 403
           GC P+  ++NTL+NS  +  +V EAL+L   M+  G +P+             +  +  +
Sbjct: 5   GCRPNVVTFNTLMNSLCREGRVLEALALVDRMVEEGHQPN------------AMGQSHIK 52

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D+ +   +VD LCK     +A  LF ++   G  PNV+TY  MI   C  G    A  L
Sbjct: 53  ADVVISTAIVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQL 112

Query: 464 LPDMEEKI------------------RECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505
           L  M EK                   R+  +A E+  +M +  + P  IT + + +   K
Sbjct: 113 LRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCK 172

Query: 506 DENCHECMNLLPSFLSR 522
            +   +   +L S  S+
Sbjct: 173 QDRVDDAKRMLDSMASK 189



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 23/189 (12%)

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP----------DTSSYNT 354
           M   G  P+VV +++L++  C  GR+ +A  L   +  EG  P          D      
Sbjct: 1   MVETGCRPNVVTFNTLMNSLCREGRVLEALALVDRMVEEGHQPNAMGQSHIKADVVISTA 60

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPD---NSCIL----------EAAELFRTLHNTK 401
           +++   K      A +L+ EM   G+ P+    +C++          +A +L R +   +
Sbjct: 61  IVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQ 120

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
              D+  F+ L++   K  ++  A E++K++ R+   P  +TY  MI G C +  ++ A 
Sbjct: 121 INPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAK 180

Query: 462 DLLPDMEEK 470
            +L  M  K
Sbjct: 181 RMLDSMASK 189


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 130/535 (24%), Positives = 224/535 (41%), Gaps = 93/535 (17%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           + DAL   + M      P  P ++ +L A      + N + + E ++  G   D  + N+
Sbjct: 127 IADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNL 186

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++N  C+   V +A   L ++       D+V+   +++GLCM  ++ +   L  + V  D
Sbjct: 187 VLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVD 246

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
           C PN++                               P++  YA+IIDG+CK+G +    
Sbjct: 247 CAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVAN 306

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE-----------LHEEFV 265
            +   M   G+ P+   YN++++  C A  W++A+   S   +           +  +F 
Sbjct: 307 EILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFF 366

Query: 266 NGNGELGVI-----------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
             NG +  +           C PDV++Y ++IN  CK+ L+D+A  L   M S G  P+ 
Sbjct: 367 CQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNT 426

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           V Y+ ++ G C  GR  DA +L   +  +GC P+  ++NTLIN   K   VE+A+ L  +
Sbjct: 427 VSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQ 486

Query: 375 MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
           M+  G  P                      DL  ++ ++DGL K+ +   A EL   +  
Sbjct: 487 MLVNGCSP----------------------DLISYSTVIDGLGKAGKTEEALELLNVMVN 524

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLK 476
            G  PN + Y+ + C L  EG + K   +  ++++                  K  E  +
Sbjct: 525 KGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDR 584

Query: 477 AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLTR 531
           AI+    M      P+E T ++L + L  +    E   LL    SR      L R
Sbjct: 585 AIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRGALRKHLMR 639



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 107/428 (25%), Positives = 180/428 (42%), Gaps = 83/428 (19%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD-GFVN 213
           P+  T   ++RGLC +G+  +A  +  +     C P  IP +  Y  I++  C+  GF N
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAP--IPPM--YHVILEAACRSGGFRN 164

Query: 214 KVRVL-FLDMKG---------------------------------RGIYPDAFVYNSLIR 239
            VRVL  +  KG                                  G   D   YN++++
Sbjct: 165 SVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLK 224

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C A  W D +       EL +E V       V C P+++++ ++I  LC++ L ++  
Sbjct: 225 GLCMAKRWGDVE-------ELMDEMVR------VDCAPNIVTFNTLIGYLCRNGLFERVH 271

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           E+   M   G  PD+ +Y+++IDG C  G ++ A ++   + S G  P+   YNT++   
Sbjct: 272 EVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGL 331

Query: 360 SKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDL 406
              E+ +EA  L  EM       D             N  +    EL   + +     D+
Sbjct: 332 CSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDV 391

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             +  +++G CK   +  A  L K +   G +PN V+YT+++ GLC  G    A +L+  
Sbjct: 392 ITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQ 451

Query: 467 MEEK----------------IRECL--KAIELLHKMAKRYVKPDEITVSILEELLNKDEN 508
           M ++                 ++ L  +AIELL +M      PD I+ S + + L K   
Sbjct: 452 MIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGK 511

Query: 509 CHECMNLL 516
             E + LL
Sbjct: 512 TEEALELL 519



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 155/382 (40%), Gaps = 53/382 (13%)

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA- 250
           V PN   +  ++ GLC  G +     +  +M  +G  P   +Y+ ++   C +  + ++ 
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 251 --------------KGNTSAALELHEEFVNGNGELGVI-------CHPDVLSYCSIINSL 289
                          GN +  L    E    +  +G++       C  D++SY +++  L
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
           C        +EL  +M      P++V +++LI   C  G  +   ++   +   GC PD 
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDI 286

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI-------------LEAAELFRT 396
             Y T+I+   K   +E A  +   M S G++P+  C               EA EL   
Sbjct: 287 RMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSE 346

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           +      LD   FN LVD  C++  +    EL +++  +G  P+V+TYT +I G C EG 
Sbjct: 347 MFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGL 406

Query: 457 IEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSI 498
           I++A  LL  M                         + A EL+ +M ++   P+ +T + 
Sbjct: 407 IDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNT 466

Query: 499 LEELLNKDENCHECMNLLPSFL 520
           L   L K     + + LL   L
Sbjct: 467 LINFLCKKGLVEQAIELLKQML 488


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 130/536 (24%), Positives = 224/536 (41%), Gaps = 93/536 (17%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            + DAL   + M      P  P ++ +L A      + N + + E ++  G   D  + N
Sbjct: 126 RIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCN 185

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +++N  C+   V +A   L ++       D+V+   +++GLCM  ++ +   L  + V  
Sbjct: 186 LVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRV 245

Query: 187 DCRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKV 215
           DC PN++                               P++  YA+IIDG+CK+G +   
Sbjct: 246 DCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVA 305

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE-----------LHEEF 264
             +   M   G+ P+   YN++++  C A  W++A+   S   +           +  +F
Sbjct: 306 NEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDF 365

Query: 265 VNGNGELGVI-----------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
              NG +  +           C PDV++Y ++IN  CK+ L+D+A  L   M S G  P+
Sbjct: 366 FCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPN 425

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
            V Y+ ++ G C  GR  DA +L   +  +GC P+  ++NTLIN   K   VE+A+ L  
Sbjct: 426 TVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLK 485

Query: 374 EMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
           +M+  G  P                      DL  ++ ++DGL K+ +   A EL   + 
Sbjct: 486 QMLVNGCSP----------------------DLISYSTVIDGLGKAGKTEEALELLNVMV 523

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECL 475
             G  PN + Y+ + C L  EG + K   +  ++++                  K  E  
Sbjct: 524 NKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETD 583

Query: 476 KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLTR 531
           +AI+    M      P+E T ++L + L  +    E   LL    SR      L R
Sbjct: 584 RAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRGALRKHLMR 639



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 107/435 (24%), Positives = 183/435 (42%), Gaps = 83/435 (19%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD-GFVN 213
           P+  T   ++RGLC +G+  +A  +  +     C P  IP +  Y  I++  C+  GF N
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAP--IPPM--YHVILEAACRSGGFRN 164

Query: 214 KVRVL-FLDMKG---------------------------------RGIYPDAFVYNSLIR 239
            VRVL  +  KG                                  G   D   YN++++
Sbjct: 165 SVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLK 224

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C A  W D +       EL +E V       V C P+++++ ++I  LC++ L ++  
Sbjct: 225 GLCMAKRWGDVE-------ELMDEMVR------VDCAPNIVTFNTLIGYLCRNGLFERVH 271

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           E+   M   G  PD+ +Y+++IDG C  G ++ A ++   + S G  P+   YNT++   
Sbjct: 272 EVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGL 331

Query: 360 SKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDL 406
              E+ +EA  L  EM       D             N  +    EL   + +     D+
Sbjct: 332 CSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDV 391

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             +  +++G CK   +  A  L K +   G +PN V+YT+++ GLC  G    A +L+  
Sbjct: 392 ITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQ 451

Query: 467 MEEK----------------IRECL--KAIELLHKMAKRYVKPDEITVSILEELLNKDEN 508
           M ++                 ++ L  +AIELL +M      PD I+ S + + L K   
Sbjct: 452 MIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGK 511

Query: 509 CHECMNLLPSFLSRN 523
             E + LL   +++ 
Sbjct: 512 TEEALELLNVMVNKG 526



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 155/382 (40%), Gaps = 53/382 (13%)

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA- 250
           V PN   +  ++ GLC  G +     +  +M  +G  P   +Y+ ++   C +  + ++ 
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 251 --------------KGNTSAALELHEEFVNGNGELGVI-------CHPDVLSYCSIINSL 289
                          GN +  L    E    +  +G++       C  D++SY +++  L
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
           C        +EL  +M      P++V +++LI   C  G  +   ++   +   GC PD 
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDI 286

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI-------------LEAAELFRT 396
             Y T+I+   K   +E A  +   M S G++P+  C               EA EL   
Sbjct: 287 RMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSE 346

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           +      LD   FN LVD  C++  +    EL +++  +G  P+V+TYT +I G C EG 
Sbjct: 347 MFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGL 406

Query: 457 IEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSI 498
           I++A  LL  M                         + A EL+ +M ++   P+ +T + 
Sbjct: 407 IDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNT 466

Query: 499 LEELLNKDENCHECMNLLPSFL 520
           L   L K     + + LL   L
Sbjct: 467 LINFLCKKGLVEQAIELLKQML 488


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 130/536 (24%), Positives = 224/536 (41%), Gaps = 93/536 (17%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            + DAL   + M      P  P ++ +L A      + N + + E ++  G   D  + N
Sbjct: 126 RIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCN 185

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +++N  C+   V +A   L ++       D+V+   +++GLCM  ++ +   L  + V  
Sbjct: 186 LVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRV 245

Query: 187 DCRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKV 215
           DC PN++                               P++  YA+IIDG+CK+G +   
Sbjct: 246 DCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVA 305

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE-----------LHEEF 264
             +   M   G+ P+   YN++++  C A  W++A+   S   +           +  +F
Sbjct: 306 NEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDF 365

Query: 265 VNGNGELGVI-----------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
              NG +  +           C PDV++Y ++IN  CK+ L+D+A  L   M S G  P+
Sbjct: 366 FCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPN 425

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
            V Y+ ++ G C  GR  DA +L   +  +GC P+  ++NTLIN   K   VE+A+ L  
Sbjct: 426 TVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLK 485

Query: 374 EMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
           +M+  G  P                      DL  ++ ++DGL K+ +   A EL   + 
Sbjct: 486 QMLVNGCSP----------------------DLISYSTVIDGLGKAGKTEEALELLNVMV 523

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECL 475
             G  PN + Y+ + C L  EG + K   +  ++++                  K  E  
Sbjct: 524 NKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETD 583

Query: 476 KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLTR 531
           +AI+    M      P+E T ++L + L  +    E   LL    SR      L R
Sbjct: 584 RAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRGALRKHLMR 639



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 107/435 (24%), Positives = 183/435 (42%), Gaps = 83/435 (19%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD-GFVN 213
           P+  T   ++RGLC +G+  +A  +  +     C P  IP +  Y  I++  C+  GF N
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAP--IPPM--YHVILEAACRSGGFRN 164

Query: 214 KVRVL-FLDMKG---------------------------------RGIYPDAFVYNSLIR 239
            VRVL  +  KG                                  G   D   YN++++
Sbjct: 165 SVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLK 224

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C A  W D +       EL +E V       V C P+++++ ++I  LC++ L ++  
Sbjct: 225 GLCMAKRWGDVE-------ELMDEMVR------VDCAPNIVTFNTLIGYLCRNGLFERVH 271

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           E+   M   G  PD+ +Y+++IDG C  G ++ A ++   + S G  P+   YNT++   
Sbjct: 272 EVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGL 331

Query: 360 SKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDL 406
              E+ +EA  L  EM       D             N  +    EL   + +     D+
Sbjct: 332 CSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDV 391

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             +  +++G CK   +  A  L K +   G +PN V+YT+++ GLC  G    A +L+  
Sbjct: 392 ITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQ 451

Query: 467 MEEK----------------IRECL--KAIELLHKMAKRYVKPDEITVSILEELLNKDEN 508
           M ++                 ++ L  +AIELL +M      PD I+ S + + L K   
Sbjct: 452 MIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGK 511

Query: 509 CHECMNLLPSFLSRN 523
             E + LL   +++ 
Sbjct: 512 TEEALELLNVMVNKG 526



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 155/382 (40%), Gaps = 53/382 (13%)

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA- 250
           V PN   +  ++ GLC  G +     +  +M  +G  P   +Y+ ++   C +  + ++ 
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 251 --------------KGNTSAALELHEEFVNGNGELGVI-------CHPDVLSYCSIINSL 289
                          GN +  L    E    +  +G++       C  D++SY +++  L
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
           C        +EL  +M      P++V +++LI   C  G  +   ++   +   GC PD 
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDI 286

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI-------------LEAAELFRT 396
             Y T+I+   K   +E A  +   M S G++P+  C               EA EL   
Sbjct: 287 RMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSE 346

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           +      LD   FN LVD  C++  +    EL +++  +G  P+V+TYT +I G C EG 
Sbjct: 347 MFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGL 406

Query: 457 IEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSI 498
           I++A  LL  M                         + A EL+ +M ++   P+ +T + 
Sbjct: 407 IDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNT 466

Query: 499 LEELLNKDENCHECMNLLPSFL 520
           L   L K     + + LL   L
Sbjct: 467 LINFLCKKGLVEQAIELLKQML 488


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 133/499 (26%), Positives = 210/499 (42%), Gaps = 109/499 (21%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL+P+ V+ N  +   CK     +A      +  K   PD+ +   L+ G   +G F + 
Sbjct: 365 GLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADM 424

Query: 177 SGLFTKF----VAFDC---------------------------RPNVIPNVICYASIIDG 205
            GLF       +A +C                           +  V P+V+ Y+++I  
Sbjct: 425 IGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVIST 484

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
             + G +      F  M  RGI P+  VY+S+I+ +C         G    A EL  E +
Sbjct: 485 FSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFC-------MHGGLVKAKELVSEMI 537

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
           N       I  PD++ + S+INSLCKD  V  A ++F      G  P V+ ++SLIDGYC
Sbjct: 538 NKG-----IPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYC 592

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-- 383
           L+G++D A K+  ++E  G  PD  +YNTL++ Y K  ++ + L+L+ EM   GV+P+  
Sbjct: 593 LVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTV 652

Query: 384 ----------------------------------------------NSCILEAAELFRTL 397
                                                         N+C  EA  LF+ L
Sbjct: 653 TYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKL 712

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                +  +T+ N +++ + K  R   A ELF  +   G  PN  TY VMI  L  +GG+
Sbjct: 713 GTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGGV 772

Query: 458 EKAYDLLPDMEEK------------IR------ECLKAIELLHKMAKRYVKPDEITVSIL 499
           E A ++   ME+             IR      E  KA   L K+  + +  +  T S++
Sbjct: 773 EDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKAGNYLSKVDGKRILLEASTTSLM 832

Query: 500 EELLNKDENCHECMNLLPS 518
             L ++     E + LLP+
Sbjct: 833 LSLFSRKGKYQEDIKLLPA 851



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 134/539 (24%), Positives = 215/539 (39%), Gaps = 91/539 (16%)

Query: 2   PSSSPATSRTAFKVKPSSSLR---NSKKPISLNSENEPSSLHSNSVSTVEEKTKLLKYLS 58
           P   P   R+++ ++P S LR    S  P+S    +      ++  S            +
Sbjct: 22  PIQRPCFRRSSY-IQPKSGLRLRHCSTTPMSRVRLHRRLLSSTSPPSPSWSPRDAFAAAT 80

Query: 59  ENSKSGEVELNDALCFFNYMIHMQPTPFMP--SFNSLLGALAGKK--------------Y 102
           E  ++G +  +DA   F+ +   Q TP +P  S N  L ALA                  
Sbjct: 81  ERVRAGTLSRDDAHHMFDELFR-QATP-VPGRSLNGFLAALARATSSSACITDGPALALA 138

Query: 103 YVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGC 162
             N +C  E    + + P F + NILM+C C+           G ILR     D +T   
Sbjct: 139 LFNRVCREEAGTQVAV-PTFCTYNILMDCCCRARRPDLGLALFGCILRTGLKMDQITANT 197

Query: 163 LIRGLCMQGKFTEASG-LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD 221
           L++ LC   +  EA   L  +     C    +PN + Y+ ++  LC +    +   L   
Sbjct: 198 LLKCLCYANRTEEAVNVLLHRMSELGC----VPNAVSYSIVLKALCDNSMSQRALDLLQM 253

Query: 222 M--KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDV 279
           M  +G    PD   Y+++I  +         +G T  A  L  E        GV   PDV
Sbjct: 254 MAKQGGACSPDVVAYSTVIHGFF-------NEGETGKACSLFHEMT----RQGV--KPDV 300

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           ++Y  II++LCK   +DKA+ +   M + G  PD V YS +I GY  +GR+ +A K+F  
Sbjct: 301 VTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFRE 360

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSC 386
           ++  G IP+  + N+ + S  K  + +EA   +  M + G +PD               C
Sbjct: 361 MKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGC 420

Query: 387 ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS--------------------------- 419
             +   LF ++ +     +  VF  L+    K                            
Sbjct: 421 FADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYST 480

Query: 420 --------WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
                    RL  A E F ++   G +PN   Y+ +I G C+ GG+ KA +L+ +M  K
Sbjct: 481 VISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINK 539



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 141/336 (41%), Gaps = 38/336 (11%)

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
            +P    Y  ++D  C+    +    LF  +   G+  D    N+L++  C A   E+A 
Sbjct: 153 AVPTFCTYNILMDCCCRARRPDLGLALFGCILRTGLKMDQITANTLLKCLCYANRTEEA- 211

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
                 + LH        ELG  C P+ +SY  ++ +LC + +  +A +L   M  +G  
Sbjct: 212 ----VNVLLHRM-----SELG--CVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGA 260

Query: 312 --PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
             PDVV YS++I G+   G    A  LF  +  +G  PD  +YN +I++  K   +++A 
Sbjct: 261 CSPDVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAE 320

Query: 370 SLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
            +  +M + G +PD                         ++C++ G     RL+ A ++F
Sbjct: 321 LVLRQMTTDGAQPDT----------------------VTYSCMIHGYATLGRLKEAAKMF 358

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIR--ECLKAIELLHKMAKR 487
           +++ + G  PN+VT    +  LC  G  ++A +    M  K    +      LLH  A  
Sbjct: 359 REMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASE 418

Query: 488 YVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
               D I +    +      NCH    L+ ++  R 
Sbjct: 419 GCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRG 454


>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 624

 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 128/505 (25%), Positives = 219/505 (43%), Gaps = 50/505 (9%)

Query: 64  GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV 123
           G   + DAL   + M      P  P ++ ++ +      Y + + + E L+  G   D  
Sbjct: 128 GRGRIADALAVLDEMTSRSCVPIPPMYHVIIESACRSGGYSSALRVLEALHAKGSTLDTG 187

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           + N+++N  C    V +    L ++       D+V+   +++GLC   ++ +   L  + 
Sbjct: 188 NCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDVEELMDEM 247

Query: 184 VAFD------CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
           V          +    P++  YA+IIDG+CK+G       +   M   G+ P+   YN++
Sbjct: 248 VKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEILSRMPSYGLKPNVVCYNTV 307

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           ++  C A  WE A+       EL  E    N      C  D +++  +++  C++ LVD+
Sbjct: 308 LKGICSADRWEKAE-------ELLTEMYQKN------CPLDDVTFNILVDFFCQNGLVDR 354

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
             EL   M   G +PDV+ Y+++I+G+C  G ID+A  L  ++ S GC P+T SY  ++ 
Sbjct: 355 VIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTIVLK 414

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFEL 404
                E+  +A  L   MI  G  P+                + +A EL + +       
Sbjct: 415 GLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNGCNP 474

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           DL  ++ ++DGL K+ +   A EL   +   G  PNV+TY+ M   L  EG I+K   + 
Sbjct: 475 DLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNVITYSSMAFALAREGRIDKVIQMF 534

Query: 465 PDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
            ++++                  K RE   AI+ L  M      P+E T + L + L  +
Sbjct: 535 DNIQDATIRSDAVLYNAVISSLCKRRETDLAIDFLAYMVSNGCMPNESTYTALIKGLASE 594

Query: 507 ENCHECMNLLPSFLSRNQEESKLTR 531
               E  +LL    SR      LTR
Sbjct: 595 GLLCEAQDLLSELCSRRAVRKHLTR 619



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 105/427 (24%), Positives = 169/427 (39%), Gaps = 79/427 (18%)

Query: 160 LGCLIRGLCMQGKFTEA----------SGL--FTKFVAFDCRPN-------------VIP 194
           L  LIR LC+ G+  +A          +G+  +   VA  CR               V P
Sbjct: 55  LSALIRSLCVAGRTADAVRALDAAGNAAGVVDYNAMVAGYCRVGQVEAARRLAAAVPVPP 114

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           N   Y  ++ GLC  G +     +  +M  R   P   +Y+ +I   C         G  
Sbjct: 115 NAYTYFPVVRGLCGRGRIADALAVLDEMTSRSCVPIPPMYHVIIESAC-------RSGGY 167

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
           S+AL + E        L      D  +   +IN++C    VD+  E+   +   G   D+
Sbjct: 168 SSALRVLEALHAKGSTL------DTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADI 221

Query: 315 VVYSSLIDGYCLMGRIDDARKL----------FVSIESEGCIPDTSSYNTLINSYSKIEK 364
           V Y++++ G C   R  D  +L             +   GC PD   Y T+I+   K   
Sbjct: 222 VSYNAVLKGLCAAKRWGDVEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGH 281

Query: 365 VEEALSLYGEMISMGVRPDNSC---IL----------EAAELFRTLHNTKFELDLTVFNC 411
            E A  +   M S G++P+  C   +L          +A EL   ++     LD   FN 
Sbjct: 282 HEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNI 341

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE-- 469
           LVD  C++  +    EL +++  +G  P+V+TYT +I G C EG I++A  LL +M    
Sbjct: 342 LVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCG 401

Query: 470 ----------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECM 513
                                + A EL+ +M ++   P+ +T + +   L K     + +
Sbjct: 402 CKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKGLVEQAI 461

Query: 514 NLLPSFL 520
            LL   L
Sbjct: 462 ELLKQML 468


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 125/452 (27%), Positives = 198/452 (43%), Gaps = 59/452 (13%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
            P   +F +L+     +      + L  R++ +G  P  V++N+L+N +CK+  V DA  
Sbjct: 228 APDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALG 287

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
            + + +   F PD VT    + GLC  G    A  +    +   C     P+V  Y+++I
Sbjct: 288 YIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCE----PDVYTYSTVI 343

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
           + LC +G + + + +   M   G  PD   +N+LI   C     E+       AL+L  E
Sbjct: 344 NCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEE-------ALDLARE 396

Query: 264 F-VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
             V G         P+V ++  +IN+LCK      A  LF +MKS G  PD V Y+ LID
Sbjct: 397 LTVKG-------LSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILID 449

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
             C  G++  A  L   +E  GC   T +YNT+I+   K  ++E                
Sbjct: 450 NLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIE---------------- 493

Query: 383 DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
                 EA E+F  +  T    +   FN L+DGLC + R+  A EL  ++   G +PN V
Sbjct: 494 ------EAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNV 547

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKM 484
           TY  ++   C +G I KA D+L  M                    K R    A++LL  M
Sbjct: 548 TYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGM 607

Query: 485 AKRYVKPDEITVSILEELLNKDENCHECMNLL 516
             + +KP     + + + L +  N  + ++L 
Sbjct: 608 RMKGMKPTPKAYNPVIQSLFRGNNGRDALSLF 639



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 165/368 (44%), Gaps = 39/368 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           EL +A    N M+     P   +FN+L+ AL  +      + L+  L   GL P+  + N
Sbjct: 351 ELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFN 410

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFS----PDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           IL+N  CK   V D  +A+ R+  ++ S    PD VT   LI  LC  GK  +A  L  +
Sbjct: 411 ILINALCK---VGDPHLAV-RLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKE 466

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
                C P    + + Y +IIDGLCK   + +   +F  M   GI  +A  +N+LI   C
Sbjct: 467 MEVSGC-PQ---STVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLC 522

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
            A   +DA        EL ++ ++          P+ ++Y SI+   CK   + KA ++ 
Sbjct: 523 NAERIDDAA-------ELVDQMISEG------LQPNNVTYNSILTHYCKQGNISKAADIL 569

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
             M + G   DVV Y++LI+G C   R   A KL   +  +G  P   +YN +I S  + 
Sbjct: 570 QTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRG 629

Query: 363 EKVEEALSLYGEMISMGVRPD--------------NSCILEAAELFRTLHNTKFELDLTV 408
               +ALSL+ EM  +G  PD                 I EA +    + +  F  + + 
Sbjct: 630 NNGRDALSLFREMTEVGGPPDAFTYKIVFRGLCRGGGPIKEAFDFLVEMADNGFIPEFSS 689

Query: 409 FNCLVDGL 416
           F  L +GL
Sbjct: 690 FRMLAEGL 697



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 141/322 (43%), Gaps = 44/322 (13%)

Query: 226 GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSI 285
           G+  +  VYN L+ V         A+G+    LE     ++  G       PDV+++ ++
Sbjct: 156 GVQANTEVYNHLLTVL--------AEGSKIKLLESAYTEMSSQG-----IEPDVVTFNTV 202

Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
           I++LC+      A  +  +M S  + PD   +++L++G+   G I+ A +L   +   GC
Sbjct: 203 IDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGC 262

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAE 392
            P + + N LIN Y K+ +V +AL    + I+ G  PD             N  +  A +
Sbjct: 263 SPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALK 322

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
           +   +     E D+  ++ +++ LC +  L  A  +  ++   G  P+  T+  +I  LC
Sbjct: 323 VLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALC 382

Query: 453 IEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEI 494
            E  +E+A DL  ++                    K+ +   A+ L  +M      PDE+
Sbjct: 383 TENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEV 442

Query: 495 TVSILEELLNKDENCHECMNLL 516
           T +IL + L       + ++LL
Sbjct: 443 TYNILIDNLCSSGKLAKALDLL 464


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 121/415 (29%), Positives = 195/415 (46%), Gaps = 54/415 (13%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G +PD  + N  ++  CKM+ + +A   + R+L + F+P+  T G L+ GLC  GK  EA
Sbjct: 282 GCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEA 341

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVR-VLFLDMKGRGIYPDAFVYN 235
             L  K       PN  PNV+ + ++I+G    G +++ + V+   M   G  PD F YN
Sbjct: 342 RMLLNKV------PN--PNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYN 393

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEF-VNGNGELGVICHPDVLSYCSIINSLCKDVL 294
           +LI   C        KG   +A EL  E  + G       C P+V++Y  +I+  CK+  
Sbjct: 394 TLILGLC-------KKGYLVSARELMNEMQIKG-------CEPNVITYTILIDRFCKEGR 439

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           +++A+ +  +M  +G+  + V Y+ LI   C   ++ DA  +F  + S+GC PD  ++N+
Sbjct: 440 LEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNS 499

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTK 401
           LI    K+ K EEAL LY +M+  GV  +                + EA +L   +    
Sbjct: 500 LIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRG 559

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
             LD   +N L+  LC++  +     LF+ +   G  PN ++  ++I GLC  G I+   
Sbjct: 560 CPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQ--- 616

Query: 462 DLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                          A+E L  M  R + PD +T + L   L K     E +NL 
Sbjct: 617 --------------HALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLF 657



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/267 (33%), Positives = 126/267 (47%), Gaps = 17/267 (6%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL  + V  N L++  CK   V DA    G +  K   PD+ T   LI GLC   KF EA
Sbjct: 454 GLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEA 513

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
            GL+   +       VI N I Y ++I    + G + +   L  DM  RG   D   YN 
Sbjct: 514 LGLYQDMLL----EGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNG 569

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI+  C A       GN    L L E+ ++         +P+ +S   +IN LC+   + 
Sbjct: 570 LIKALCRA-------GNIEKGLALFEDMMSKG------LNPNNISCNILINGLCRTGNIQ 616

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A E   DM  RG+ PD+V Y+SLI+G C  GR  +A  LF  ++ EG  PD  +YNTLI
Sbjct: 617 HALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLI 676

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD 383
           + + K    ++A  L    +  G  P+
Sbjct: 677 SWHCKEGMFDDAHLLLSRGVDSGFIPN 703



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 161/371 (43%), Gaps = 73/371 (19%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC--------CAV 245
           P    Y  ++D L        V  +F +M  +GI P  + +  +++  C        CA+
Sbjct: 180 PTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACAL 239

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVI--------------CHPDVLSYCSIINSLCK 291
             +  +        +++  ++   ++G +              C PDV ++   I+ LCK
Sbjct: 240 LKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCK 299

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
            + + +A +L   M  RG  P+   Y  L+ G C MG++D+AR L   + +    P+   
Sbjct: 300 MLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPN----PNVVL 355

Query: 352 YNTLINSYSKIEKVEEALSLYGE-MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFN 410
           +NTLIN Y    +++EA ++  E M+S+G  P                      D+  +N
Sbjct: 356 FNTLINGYVSRGRLDEAKAVMHESMLSVGCGP----------------------DIFTYN 393

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM--- 467
            L+ GLCK   L SA EL  ++   G EPNV+TYT++I   C EG +E+A ++L +M   
Sbjct: 394 TLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGK 453

Query: 468 ------------------EEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENC 509
                             +EK+++   A+ +   M+ +  KPD  T + L   L K    
Sbjct: 454 GLALNAVGYNCLISALCKDEKVQD---ALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKF 510

Query: 510 HECMNLLPSFL 520
            E + L    L
Sbjct: 511 EEALGLYQDML 521



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 116/258 (44%), Gaps = 17/258 (6%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++ DAL  F  M      P + +FNSL+  L     +   + L + +   G++ + ++ N
Sbjct: 474 KVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYN 533

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ F +   + +A   +  +L +    D +T   LI+ LC  G   +   LF   ++ 
Sbjct: 534 TLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSK 593

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
              PN   N+ C   +I+GLC+ G +        DM  RG+ PD   YNSLI   C    
Sbjct: 594 GLNPN---NISCNI-LINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLC---- 645

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G    AL L ++      ++  IC PD ++Y ++I+  CK+ + D A  L     
Sbjct: 646 ---KTGRAQEALNLFDKL-----QVEGIC-PDAITYNTLISWHCKEGMFDDAHLLLSRGV 696

Query: 307 SRGIIPDVVVYSSLIDGY 324
             G IP+ V +  L+  +
Sbjct: 697 DSGFIPNEVTWYILVSNF 714



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 113/266 (42%), Gaps = 34/266 (12%)

Query: 199 YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL 258
           Y  +ID L   G    +  L + MK  GI     ++  +++ Y  A     A   T   L
Sbjct: 114 YYMLIDKLGAAGEFKTIDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQA---TRLLL 170

Query: 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS 318
           ++   +          C P   SY  +++ L           +F +M S+GI P V  + 
Sbjct: 171 DMRGVYS---------CEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFG 221

Query: 319 SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
            ++   CL+  +D A  L   +   GC+P+   Y TLI++  K+ +V E L L  EM+ M
Sbjct: 222 VVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLM 281

Query: 379 GVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
           G  P                      D+  FN  + GLCK  R+  A +L  ++   G  
Sbjct: 282 GCIP----------------------DVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFT 319

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLL 464
           PN  TY V++ GLC  G +++A  LL
Sbjct: 320 PNSFTYGVLMHGLCRMGKVDEARMLL 345



 Score = 46.6 bits (109), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 2/110 (1%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           ++G ++   AL F   MIH   TP + ++NSL+  L         + L ++L   G+ PD
Sbjct: 611 RTGNIQ--HALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPD 668

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
            ++ N L++  CK     DA + L R +   F P+ VT   L+     +G
Sbjct: 669 AITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEG 718


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 128/467 (27%), Positives = 216/467 (46%), Gaps = 63/467 (13%)

Query: 72  LCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131
           L  F  M H    PF+   N +L AL  +  + +   +   +  +G+ P  V+ N L++ 
Sbjct: 181 LAAFREMAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDS 240

Query: 132 FCKMIGVSDAFVALGRILRKVFS------PDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           F +   V  A     ++LR++ +      P  VT   +I GL  +G+  +A+ L  +   
Sbjct: 241 FFREGRVDQA----AKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRM-- 294

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
              R +   +   +  +I G    G V K   L L+M+  GI P    YN++I     + 
Sbjct: 295 ---RMSKKASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSG 351

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
           N E A+           +FV     +G++  PD+++Y S+IN  CK   + +A  LF D+
Sbjct: 352 NVEAAR----------MKFVEMRA-MGLL--PDLITYNSLINGYCKAGNLKEALWLFGDL 398

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
           K  G+ P V+ Y+ L+DGYC +G +++AR+    +  +GC PD S+Y  L+N   K+  +
Sbjct: 399 KRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNL 458

Query: 366 EEALSLYGEMISMGVRPD----NSCILEAAELFRTLHNTKFEL-----------DLTVFN 410
                 + EM+S G++PD    N+ I  +AEL     +  F+L           D   +N
Sbjct: 459 AMVREFFDEMLSKGLQPDCFAYNTRI--SAELILGSTSEAFQLTEVMISRGISSDTVTYN 516

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE- 469
             +DGLCKS  L+ A+ L+ K+   G +P+ +TYT +I   C  G + +A D+   M   
Sbjct: 517 IFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVS 576

Query: 470 -----------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                            +      A     KM +  V+P+E+T ++L
Sbjct: 577 GLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVL 623



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 164/357 (45%), Gaps = 39/357 (10%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +  +GLLPD ++ N L+N +CK   + +A    G + R   +P V+T   L+ G C  G 
Sbjct: 363 MRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGD 422

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
             EA     + V   C+P+V      Y  +++G  K   +  VR  F +M  +G+ PD F
Sbjct: 423 LEEARRFKQEMVEQGCQPDVS----TYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCF 478

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            YN+ I         E   G+TS A +L E  ++           D ++Y   ++ LCK 
Sbjct: 479 AYNTRISA-------ELILGSTSEAFQLTEVMISRG------ISSDTVTYNIFLDGLCKS 525

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             +  A  L++ M S G+ PD + Y+ LI  +C  GR+ +AR +F  +   G  P   +Y
Sbjct: 526 GNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTY 585

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCL 412
              I++Y +   +  A   + +M+  GVRP+                         +N L
Sbjct: 586 TVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNE----------------------VTYNVL 623

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           +  LC+  R   A++ F ++   G  PN  TYT++I G C EG  E+A  L  +M +
Sbjct: 624 IHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQ 680



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 134/298 (44%), Gaps = 23/298 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI---GLLPDFV 123
           +L +A  F   M+     P + ++  L+    G +   N   + E  + +   GL PD  
Sbjct: 422 DLEEARRFKQEMVEQGCQPDVSTYTILMN---GSRKVRNLAMVREFFDEMLSKGLQPDCF 478

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           + N  ++    +   S+AF     ++ +  S D VT    + GLC  G   +A  L+ K 
Sbjct: 479 AYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKM 538

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
           V+      + P+ I Y  +I   C+ G + + R +F  M   G+ P A  Y   I  YC 
Sbjct: 539 VS----DGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYC- 593

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                  +GN  +A    ++ +    E GV   P+ ++Y  +I++LC+    + A + F 
Sbjct: 594 ------RRGNLYSAYGWFQKML----EEGV--RPNEVTYNVLIHALCRMGRTNLAYQHFH 641

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           +M  RG+ P+   Y+ LIDG C  G  ++A +L+  +   G  PD  ++N L   + +
Sbjct: 642 EMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPDHCTHNALFKGFDE 699


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 133/506 (26%), Positives = 216/506 (42%), Gaps = 89/506 (17%)

Query: 52  KLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSE 111
           +L+  L  N K+     N     F  MI +       + NSLL  LA +  +     L E
Sbjct: 275 RLITRLCRNRKT-----NRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELME 329

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI--------LRKVFSPDVVTLGCL 163
           ++  + + P+ V+  IL+N  CK   V DA   L ++        +     PDVV    L
Sbjct: 330 KMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTL 389

Query: 164 IRGLCMQGKFTEASGLFTKF----------VAFDC----------------------RPN 191
           I GLC  G+  E  GL  +           + ++C                      +  
Sbjct: 390 IDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEG 449

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
           V PNV+   +++ G+C+ G V+     F++ + RG+  DA  Y +LI  +C   N+E   
Sbjct: 450 VAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEK-- 507

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
                A+EL  E +         C PD + Y ++I+   +   +  A  +  ++K  GI 
Sbjct: 508 -----AMELFNEMLKSG------CSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIR 556

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           PD V Y++LI G+C   +     ++   +E  G  PDT +YNTLI   SK   ++ A  +
Sbjct: 557 PDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKV 616

Query: 372 YGEMISMGVRPD-------------NSCILEAAELFRTLH-NTKFELDLTVFNCLVDGLC 417
             +MI  GV P              N    EA E+F+ +   +K   +  ++N L++ LC
Sbjct: 617 MRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLC 676

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKA 477
           K+ +++SA  L + +  +G  PN  TY  +  GL  E  +EK +                
Sbjct: 677 KNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVF---------------- 720

Query: 478 IELLHKMAKRYVKPDEITVSILEELL 503
            E + +M +    PD IT+ IL E L
Sbjct: 721 -EFMDRMIEHACNPDYITMEILTEWL 745



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 112/284 (39%), Gaps = 22/284 (7%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           A+  FN M+    +P    + +L+     AG+    +F+ L+E L  +G+ PD V  N L
Sbjct: 508 AMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFV-LAE-LKKLGIRPDTVCYNTL 565

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           +  FC+       F  L  +      PD +T   LI      G    A  +  K +    
Sbjct: 566 IGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMI---- 621

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG-IYPDAFVYNSLIRVYCCAVNW 247
           +  V+P V  Y ++I+  C +G  N+   +F DMK    + P+  +YN LI   C     
Sbjct: 622 KAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLC----- 676

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
                   +A+ L E+        GV   P+  +Y +I   L  +  ++K  E    M  
Sbjct: 677 --KNNKVKSAVSLMEDM----KIWGVT--PNTTTYNAIFKGLRDEKDLEKVFEFMDRMIE 728

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
               PD +    L +    +G I+  +K     E        +S
Sbjct: 729 HACNPDYITMEILTEWLSAVGEIERLKKFVAGCEVSSSTAQKAS 772



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 85/197 (43%), Gaps = 22/197 (11%)

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           D+   L L     G++        LI   C   + +    LF  +   G + ++++ N+L
Sbjct: 252 DEIVNLVLKFGEHGVLISSFWMGRLITRLCRNRKTNRGWDLFTEMIKLGAVLESAACNSL 311

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRP---------DNSC----ILEAAELFRTLHNTK- 401
           +   ++         L  +M+ M ++P         ++ C    + +A E+   +   K 
Sbjct: 312 LTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKE 371

Query: 402 -------FELDLTVFNCLVDGLCKSWRLRSAWELFKKL-PRYGPEPNVVTYTVMICGLCI 453
                   E D+ ++N L+DGLCK  R +    L +++  + G  P+ +TY  +I G C 
Sbjct: 372 SGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCK 431

Query: 454 EGGIEKAYDLLPDMEEK 470
            G IEK  +L  +M ++
Sbjct: 432 AGEIEKGKELFDEMNKE 448


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 121/415 (29%), Positives = 195/415 (46%), Gaps = 54/415 (13%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G +PD  + N  ++  CKM+ + +A   + R+L + F+P+  T G L+ GLC  GK  EA
Sbjct: 300 GCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEA 359

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVR-VLFLDMKGRGIYPDAFVYN 235
             L  K       PN  PNV+ + ++I+G    G +++ + V+   M   G  PD F YN
Sbjct: 360 RMLLNKV------PN--PNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYN 411

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEF-VNGNGELGVICHPDVLSYCSIINSLCKDVL 294
           +LI   C        KG   +A EL  E  + G       C P+V++Y  +I+  CK+  
Sbjct: 412 TLILGLC-------KKGYLVSARELMNEMQIKG-------CEPNVITYTILIDRFCKEGR 457

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           +++A+ +  +M  +G+  + V Y+ LI   C   ++ DA  +F  + S+GC PD  ++N+
Sbjct: 458 LEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNS 517

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTK 401
           LI    K+ K EEAL LY +M+  GV  +                + EA +L   +    
Sbjct: 518 LIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRG 577

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
             LD   +N L+  LC++  +     LF+ +   G  PN ++  ++I GLC  G I+   
Sbjct: 578 CPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQ--- 634

Query: 462 DLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                          A+E L  M  R + PD +T + L   L K     E +NL 
Sbjct: 635 --------------HALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLF 675



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/267 (33%), Positives = 126/267 (47%), Gaps = 17/267 (6%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL  + V  N L++  CK   V DA    G +  K   PD+ T   LI GLC   KF EA
Sbjct: 472 GLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEA 531

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
            GL+   +       VI N I Y ++I    + G + +   L  DM  RG   D   YN 
Sbjct: 532 LGLYQDMLL----EGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNG 587

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI+  C A       GN    L L E+ ++         +P+ +S   +IN LC+   + 
Sbjct: 588 LIKALCRA-------GNIEKGLALFEDMMSKG------LNPNNISCNILINGLCRTGNIQ 634

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A E   DM  RG+ PD+V Y+SLI+G C  GR  +A  LF  ++ EG  PD  +YNTLI
Sbjct: 635 HALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLI 694

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD 383
           + + K    ++A  L    +  G  P+
Sbjct: 695 SWHCKEGMFDDAHLLLSRGVDSGFIPN 721



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 161/371 (43%), Gaps = 73/371 (19%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC--------CAV 245
           P    Y  ++D L        V  +F +M  +GI P  + +  +++  C        CA+
Sbjct: 198 PTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACAL 257

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVI--------------CHPDVLSYCSIINSLCK 291
             +  +        +++  ++   ++G +              C PDV ++   I+ LCK
Sbjct: 258 LKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCK 317

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
            + + +A +L   M  RG  P+   Y  L+ G C MG++D+AR L   + +    P+   
Sbjct: 318 MLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPN----PNVVL 373

Query: 352 YNTLINSYSKIEKVEEALSLYGE-MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFN 410
           +NTLIN Y    +++EA ++  E M+S+G  P                      D+  +N
Sbjct: 374 FNTLINGYVSRGRLDEAKAVMHESMLSVGCGP----------------------DIFTYN 411

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM--- 467
            L+ GLCK   L SA EL  ++   G EPNV+TYT++I   C EG +E+A ++L +M   
Sbjct: 412 TLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGK 471

Query: 468 ------------------EEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENC 509
                             +EK+++   A+ +   M+ +  KPD  T + L   L K    
Sbjct: 472 GLALNAVGYNCLISALCKDEKVQD---ALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKF 528

Query: 510 HECMNLLPSFL 520
            E + L    L
Sbjct: 529 EEALGLYQDML 539



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 116/258 (44%), Gaps = 17/258 (6%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++ DAL  F  M      P + +FNSL+  L     +   + L + +   G++ + ++ N
Sbjct: 492 KVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYN 551

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ F +   + +A   +  +L +    D +T   LI+ LC  G   +   LF   ++ 
Sbjct: 552 TLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSK 611

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
              PN   N+ C   +I+GLC+ G +        DM  RG+ PD   YNSLI   C    
Sbjct: 612 GLNPN---NISCNI-LINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLC---- 663

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G    AL L ++      ++  IC PD ++Y ++I+  CK+ + D A  L     
Sbjct: 664 ---KTGRAQEALNLFDKL-----QVEGIC-PDAITYNTLISWHCKEGMFDDAHLLLSRGV 714

Query: 307 SRGIIPDVVVYSSLIDGY 324
             G IP+ V +  L+  +
Sbjct: 715 DSGFIPNEVTWYILVSNF 732



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 88/190 (46%), Gaps = 22/190 (11%)

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
           C P   SY  +++ L           +F +M S+GI P V  +  ++   CL+  +D A 
Sbjct: 196 CEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSAC 255

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
            L   +   GC+P+   Y TLI++ SK+ +V E L L  EM+ MG  P            
Sbjct: 256 ALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIP------------ 303

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
                     D+  FN  + GLCK  R+  A +L  ++   G  PN  TY V++ GLC  
Sbjct: 304 ----------DVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRM 353

Query: 455 GGIEKAYDLL 464
           G +++A  LL
Sbjct: 354 GKVDEARMLL 363



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 2/110 (1%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           ++G ++   AL F   MIH   TP + ++NSL+  L         + L ++L   G+ PD
Sbjct: 629 RTGNIQ--HALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPD 686

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
            ++ N L++  CK     DA + L R +   F P+ VT   L+     +G
Sbjct: 687 AITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEG 736


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 133/496 (26%), Positives = 234/496 (47%), Gaps = 60/496 (12%)

Query: 52  KLLKYLSENSKSGEVELNDALCFFNYMI-HMQPTPFMPSFNSLLGALAGKK------YYV 104
           +L + +++ ++SG + ++DAL  F+ ++ H +P   + +FN LL  +A  +        V
Sbjct: 14  ELERVIADRARSGSLGIDDALKLFDELLPHARPAS-VRAFNHLLNVVARARCSSTSELAV 72

Query: 105 NFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLI 164
           +      R  +  + PD  + +IL  CFC++  +   F A G IL+  +  + V +  L+
Sbjct: 73  SLFNRMARACSNKVRPDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLL 132

Query: 165 RGLCMQGKFTEASG-LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
            GLC   +  EA   L  +   F C    +PNV+   +++ GLC +  V +   L   M 
Sbjct: 133 NGLCDAKRVDEAMDILLRRMPEFGC----MPNVVSCNTLLKGLCNEKRVEEALELLHTMA 188

Query: 224 ---GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVL 280
              G    P+   YN++I   C A   + A+G       + +  ++   +L      DV+
Sbjct: 189 EDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEG-------VLQHMIDKGVKL------DVV 235

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
           +Y +II+ LCK   VD+A+ +   M  +G+ PDVV Y+++IDG C    +D A  +   +
Sbjct: 236 TYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHM 295

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCIL-------EA 390
             +G  PD  +YNT+I+   K + V+ A  +   MI   V+PD    +C++       E 
Sbjct: 296 IDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEW 355

Query: 391 AELFRTL---HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
            E+ R L   +    + D+  ++ L+D LCK+ +   A ++F  + R G +PNV  Y ++
Sbjct: 356 KEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGIL 415

Query: 448 ICGLCIEGGIEKAYDLLPDMEE----------KIRECL--------KAIELLHKMAKRYV 489
           + G    G I    DLL  M             I  C         +A+ +  +M++  +
Sbjct: 416 LHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGL 475

Query: 490 KPDEITVSILEELLNK 505
            PD +T  IL + L K
Sbjct: 476 SPDVVTYGILIDALCK 491



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 119/430 (27%), Positives = 200/430 (46%), Gaps = 35/430 (8%)

Query: 53  LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSER 112
           LL YL +N K  E     A   F  MI     P +  +  LL   A +    +   L + 
Sbjct: 380 LLDYLCKNGKCTE-----ARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDL 434

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +   G+ P+    NI++  + K   + +A     R+ +   SPDVVT G LI  LC  G+
Sbjct: 435 MVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGR 494

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
             +A   F + +       V PN + + S++ GLC      K   LF +M  +G+ P+  
Sbjct: 495 VDDAVLKFNQMI----NDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVV 550

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            +N+++   C               + + +  ++    +GV   P+V+SY ++I   C  
Sbjct: 551 FFNTIMCNLC-----------NEGQVMVAQRLIDSMERVGV--RPNVISYNTLIGGHCLA 597

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
              D+A +L   M S G+ PD++ Y +L+ GYC  GRID+A  LF  +  +G  P   +Y
Sbjct: 598 GRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTY 657

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHN 399
           +T++       +  EA  LY  MI  G + D              +C+ EA ++F++L +
Sbjct: 658 STILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCS 717

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
                ++  F  ++D L K  R + A +LF  +P +G  PNVVTY +M+  +  EG +++
Sbjct: 718 KDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDE 777

Query: 460 AYDLLPDMEE 469
             +L   ME+
Sbjct: 778 FDNLFLAMEK 787



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 137/510 (26%), Positives = 233/510 (45%), Gaps = 80/510 (15%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+  V+  D +    +MI     P + ++N L+        +   +   E +   GL PD
Sbjct: 316 KAQAVDRADGV--LQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPD 373

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+ ++L++  CK    ++A      ++RK   P+V   G L+ G   +G   + + L  
Sbjct: 374 VVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLD 433

Query: 182 KFVAFDCRPN-------------------------------VIPNVICYASIIDGLCKDG 210
             VA    PN                               + P+V+ Y  +ID LCK G
Sbjct: 434 LMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLG 493

Query: 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGE 270
            V+   + F  M   G+ P++ V+NSL+   C    WE A           EE      +
Sbjct: 494 RVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKA-----------EELFFEMWD 542

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
            GV   P+V+ + +I+ +LC +  V  A+ L   M+  G+ P+V+ Y++LI G+CL GR 
Sbjct: 543 QGV--RPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRT 600

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---SCI 387
           D+A +L   + S G  PD  SY+TL+  Y K  +++ A  L+ EM+  GV P     S I
Sbjct: 601 DEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTI 660

Query: 388 L----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
           L          EA EL+  +  +  + D+  +N +++GLCK+  +  A+++F+ L     
Sbjct: 661 LQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDL 720

Query: 438 EPNVVTYTVMICGLCIEGGIEK----------AYDLLPD-------MEEKIRECL--KAI 478
            PN++T+T+MI  +  +GG +K          ++ L+P+       M+  I+E L  +  
Sbjct: 721 RPNIITFTIMI-DVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFD 779

Query: 479 ELLHKMAKRYVKPDEITV-SILEELLNKDE 507
            L   M K    PD + + +I+  LL + E
Sbjct: 780 NLFLAMEKSGCTPDSVMLNAIIRSLLGRGE 809



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 125/447 (27%), Positives = 200/447 (44%), Gaps = 48/447 (10%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           TP + ++N+++  L   +       + + +   G+  D V+ + +++  CK   V  A  
Sbjct: 196 TPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEG 255

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
            L  ++ K   PDVVT   +I GLC       A G+    +       V P+V+ Y +II
Sbjct: 256 VLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMI----DKGVKPDVVTYNTII 311

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
           DGLCK   V++   +   M  + + PD   YN LI  Y     W++          L E 
Sbjct: 312 DGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEV------VRRLEEM 365

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
           +  G         PDV++Y  +++ LCK+    +A+++F  M  +GI P+V +Y  L+ G
Sbjct: 366 YARG-------LDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHG 418

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP- 382
           Y   G I D   L   + + G  P+   +N ++ +Y+K   ++EA+ ++  M   G+ P 
Sbjct: 419 YAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPD 478

Query: 383 --------DNSCIL----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
                   D  C L    +A   F  + N     +  VFN LV GLC   R   A ELF 
Sbjct: 479 VVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFF 538

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE-KIR------------ECL-- 475
           ++   G  PNVV +  ++C LC EG +  A  L+  ME   +R             CL  
Sbjct: 539 EMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAG 598

Query: 476 ---KAIELLHKMAKRYVKPDEITVSIL 499
              +A +LL  M    +KPD I+   L
Sbjct: 599 RTDEAAQLLDVMVSVGLKPDLISYDTL 625



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 154/357 (43%), Gaps = 56/357 (15%)

Query: 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
           A  LF + +A  C   V P++  Y+ +    C+ G +      F  +   G   +  V N
Sbjct: 71  AVSLFNR-MARACSNKVRPDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVIN 129

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
            L+   C A   ++A       L    EF          C P+V+S  +++  LC +  V
Sbjct: 130 QLLNGLCDAKRVDEA---MDILLRRMPEFG---------CMPNVVSCNTLLKGLCNEKRV 177

Query: 296 DKAKELFLDMKSRG---IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
           ++A EL   M   G     P+VV Y+++IDG C    +D A  +   +  +G   D  +Y
Sbjct: 178 EEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTY 237

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCL 412
           +T+I+   K + V+ A  +   MI  GV+PD                      +  +N +
Sbjct: 238 STIIDGLCKAQAVDRAEGVLQHMIDKGVKPD----------------------VVTYNTI 275

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-- 470
           +DGLCK+  +  A  + + +   G +P+VVTY  +I GLC    +++A  +L  M +K  
Sbjct: 276 IDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDV 335

Query: 471 -----IRECL-----------KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHE 511
                   CL           + +  L +M  R + PD +T S+L + L K+  C E
Sbjct: 336 KPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTE 392


>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
          Length = 703

 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 129/518 (24%), Positives = 243/518 (46%), Gaps = 71/518 (13%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L+ A+  F+ +   Q  P   ++++L+  LA +    + + L + +    + PD V  N
Sbjct: 173 DLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDLLDEMPRSRVQPDVVCYN 232

Query: 127 ILMN-CFCKMIGVSDAFVALGRILRKVFS-----PDVVTLGCLIRGLCMQGKFTEASGLF 180
            L+  CF      +  F  + R+  K+       P++ T   ++ GLC  G+F E   ++
Sbjct: 233 ALLGGCF-----KAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVW 287

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            + VA     N+ P+VI Y  +I GLC+ G V+    ++ ++   G+  DA +YNSL++ 
Sbjct: 288 ERMVA----NNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKG 343

Query: 241 YCCAVN-------WEDAKGNTSAALELHEEFVNGNGELGVI---------------CHPD 278
           +C A         W+ A       L  +   + G  + G++               C PD
Sbjct: 344 FCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPD 403

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
            +++ ++I+ LC++   +KA  +F + +  G   DV  YSS+I+G C +GR+ DA K++ 
Sbjct: 404 TVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYE 463

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC--- 386
            ++ +GC P++  YN LI+ + ++ +  +A+ +Y +M   G  P         D  C   
Sbjct: 464 KMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAE 523

Query: 387 -ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
              EA+ + R +    F  D+T +  L+ GL    ++  A  ++K++   G + +V+ + 
Sbjct: 524 KYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHN 583

Query: 446 VMICGLCIEGGIEKAYDLLPDMEEKIRECL--------------------KAIELLHKMA 485
           ++I GLC  G +++A  +  DM+EK + C                     KA  L   + 
Sbjct: 584 ILIHGLCSAGKVDEALHVFSDMKEK-KNCPPNLVTYNTLMDGLYETGYIDKAATLWTSIT 642

Query: 486 KRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
           +  ++PD I+ +   + L   +  HE + LL   LSR 
Sbjct: 643 EDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRG 680



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 158/339 (46%), Gaps = 35/339 (10%)

Query: 137 GVSDAFVALGRILRKVFS--PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
           G+ D  + L  +L K  +  PD VT G LI GLC  G   +A   FT F         + 
Sbjct: 382 GMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKA---FTIFEEARVSGKQL- 437

Query: 195 NVICYASIIDGLCKDG-FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           +V  Y+S+I+GLC  G  V+ V+V +  M   G  P++ +YN+LI  +C           
Sbjct: 438 DVFSYSSMINGLCNVGRLVDAVKV-YEKMDKDGCKPNSHIYNALISGFCQVYR------- 489

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
           TS A+ ++ +  + NG     C P V++Y ++I+ LCK     +A  +  +M   G  PD
Sbjct: 490 TSDAVRIYSKMAD-NG-----CSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPD 543

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           +  Y SLI G     +IDDA  ++  I  +G   D   +N LI+      KV+EAL ++ 
Sbjct: 544 ITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFS 603

Query: 374 EMISMGVRPDN--------------SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
           +M      P N                I +AA L+ ++     E D+  +N  + GLC  
Sbjct: 604 DMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSC 663

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
            R+    +L  ++   G  P V+T+ +++  +   G I+
Sbjct: 664 DRIHEGIQLLDEVLSRGIIPTVITWNILVRAVIKYGPIQ 702



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 105/468 (22%), Positives = 191/468 (40%), Gaps = 78/468 (16%)

Query: 127 ILMNCFCKMI---GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           ++++ F + I      DAF AL  IL    +P + +   L+       +F++A   F   
Sbjct: 88  VVLSAFSRAIMPDAALDAFRALPSILG--CNPGIRSHNALLDAFVRARRFSDADAFFASL 145

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
                   + PN+  Y  ++  LC  G +++   LF  ++ R + PD   Y++L+    C
Sbjct: 146 SHGAFGRRIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDRITYSTLM----C 201

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICH--------------------------- 276
            +  +D       AL+L +E      +  V+C+                           
Sbjct: 202 GLAKQD---RLDHALDLLDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDP 258

Query: 277 ---PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
              P++ +Y  +++ LCK     +  E++  M +  + PDV+ Y  LI G C  G +D A
Sbjct: 259 GARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGA 318

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP----------- 382
            +++  I   G + D + YN+L+  + +  +V+EA   +      G+R            
Sbjct: 319 ARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGL 378

Query: 383 -DNSCILEAAELFRTLHNTKFEL-DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
            D+  + EA EL+  L      + D   F  L+ GLC++     A+ +F++    G + +
Sbjct: 379 FDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLD 438

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLH 482
           V +Y+ MI GLC  G +  A  +   M++                  ++     A+ +  
Sbjct: 439 VFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYS 498

Query: 483 KMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           KMA     P  IT + L + L K E   E      S ++R   E+  T
Sbjct: 499 KMADNGCSPTVITYNTLIDGLCKAEKYQEA-----SSVAREMVENGFT 541



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 134/299 (44%), Gaps = 18/299 (6%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P   +F +L+  L    +      + E     G   D  S + ++N  C +  + DA   
Sbjct: 402 PDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKV 461

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
             ++ +    P+      LI G C   + ++A  +++K     C P VI     Y ++ID
Sbjct: 462 YEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVI----TYNTLID 517

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           GLCK     +   +  +M   G  PD   Y SLIR        +DA       L + ++ 
Sbjct: 518 GLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDA-------LSIWKQI 570

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK-SRGIIPDVVVYSSLIDG 323
           +    ++      DV+ +  +I+ LC    VD+A  +F DMK  +   P++V Y++L+DG
Sbjct: 571 LYKGLKV------DVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDG 624

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
               G ID A  L+ SI  +G  PD  SYNT I      +++ E + L  E++S G+ P
Sbjct: 625 LYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIP 683



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 131/278 (47%), Gaps = 16/278 (5%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           S++S++  L      V+ + + E+++  G  P+    N L++ FC++   SDA     ++
Sbjct: 441 SYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKM 500

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
                SP V+T   LI GLC   K+ EAS +  + V         P++  Y S+I GL  
Sbjct: 501 ADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMV----ENGFTPDITTYGSLIRGLFS 556

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           D  ++    ++  +  +G+  D  ++N LI   C A       G    AL +  +     
Sbjct: 557 DKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSA-------GKVDEALHVFSDMKEKK 609

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                 C P++++Y ++++ L +   +DKA  L+  +   G+ PD++ Y++ I G C   
Sbjct: 610 N-----CPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCD 664

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           RI +  +L   + S G IP   ++N L+ +  K   ++
Sbjct: 665 RIHEGIQLLDEVLSRGIIPTVITWNILVRAVIKYGPIQ 702



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 35/172 (20%)

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           + A  + L   SR I+PD  +               DA +   SI   GC P   S+N L
Sbjct: 83  ESAALVVLSAFSRAIMPDAAL---------------DAFRALPSIL--GCNPGIRSHNAL 125

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDG 415
           ++++ +  +  +A + +                  A L       +   +L  +N ++  
Sbjct: 126 LDAFVRARRFSDADAFF------------------ASLSHGAFGRRIAPNLQTYNIVLRS 167

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           LC    L  A  LF  L R    P+ +TY+ ++CGL  +  ++ A DLL +M
Sbjct: 168 LCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDLLDEM 219


>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 665

 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 124/467 (26%), Positives = 210/467 (44%), Gaps = 58/467 (12%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N+L+   AG   Y         + ++ + PD  +   L+   C    V DA   L  +
Sbjct: 107 AYNTLV---AGYCRYGRLDAARRLIASMPVPPDAYTYTPLIRGLCDRGRVGDALSLLDDM 163

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
           LR+   P VVT   L+  +C    F +A  +  +  A  C     PN++ Y  II+G+C+
Sbjct: 164 LRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGC----TPNIVTYNVIINGMCR 219

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           +  V+  R +   +   G  PD   Y ++++  C A  WED +        L  E V  N
Sbjct: 220 EDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVE-------VLFCEMVENN 272

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                 C P+ +++  ++   C+  +V++A E+   M   G   +  + + +I+  C  G
Sbjct: 273 ------CVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQG 326

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS--- 385
           R+DDA +   ++ S GC PDT SY T++    +  + E+A  L  EM+     P+     
Sbjct: 327 RVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFN 386

Query: 386 ---CIL-------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
              CIL       +A  L   +      + +  +N LV+G C   R+ SA ELF  LP  
Sbjct: 387 TFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNSLP-- 444

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC--------------------L 475
             EPN +TYT ++ GLC    ++ A +LL +M +   +C                     
Sbjct: 445 -CEPNTITYTTLLTGLCHAERLDAAAELLAEMMQN--DCPLNVVTFNVLVSFFCQKGFVE 501

Query: 476 KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
           +AIEL+ +M +    P+ IT + L + + +D N  E + LL   +S+
Sbjct: 502 EAIELVQQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSK 548



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 123/497 (24%), Positives = 221/497 (44%), Gaps = 91/497 (18%)

Query: 51  TKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLS 110
           T L++ L +  + G     DAL   + M+  +  P + ++  LL A+     +   + + 
Sbjct: 141 TPLIRGLCDRGRVG-----DALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVL 195

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           + +   G  P+ V+ N+++N  C+   V DA   L R+    F PD V+   +++GLC  
Sbjct: 196 DEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAA 255

Query: 171 GKFTEASGLFTKFVAFDCRPN---------------VIPNVI----------CYAS---- 201
            ++ +   LF + V  +C PN               ++   I          C A+    
Sbjct: 256 KRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLC 315

Query: 202 --IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE 259
             +I+ +CK G V+       +M   G  PD   Y ++++  C A  WEDAK       E
Sbjct: 316 NIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAK-------E 368

Query: 260 LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSS 319
           L  E V  N      C P+ +++ + I  LC+  L+D+A  L   M   G    +V Y++
Sbjct: 369 LLNEMVRKN------CPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNA 422

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           L++G+C+ GR+D A +LF S+    C P+T +Y TL+      E+++ A  L  EM+   
Sbjct: 423 LVNGFCVQGRVDSALELFNSLP---CEPNTITYTTLLTGLCHAERLDAAAELLAEMMQ-- 477

Query: 380 VRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
               N C                 L++  FN LV   C+   +  A EL +++  +G  P
Sbjct: 478 ----NDC----------------PLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGCTP 517

Query: 440 NVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           N++T+  ++ G+  +   E                 +A+ELLH +  + +  D IT S +
Sbjct: 518 NLITFNTLLDGITEDCNSE-----------------EALELLHGLVSKGISLDTITYSSI 560

Query: 500 EELLNKDENCHECMNLL 516
            ++L++++   E + + 
Sbjct: 561 VDVLSREDRIEEAVQMF 577



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 106/430 (24%), Positives = 190/430 (44%), Gaps = 38/430 (8%)

Query: 51  TKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLS 110
           T +LK L    +  +VE+      F  M+     P   +F+ L+            I + 
Sbjct: 246 TTVLKGLCAAKRWEDVEV-----LFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVL 300

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           +R++  G   +    NI++N  CK   V DAF  L  +     SPD ++   +++GLC  
Sbjct: 301 DRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRA 360

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G++ +A  L  + V    R N  PN + + + I  LC+ G +++  +L   M   G    
Sbjct: 361 GRWEDAKELLNEMV----RKNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVG 416

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
              YN+L+  +C        +G   +ALEL              C P+ ++Y +++  LC
Sbjct: 417 IVTYNALVNGFC-------VQGRVDSALELFNSLP---------CEPNTITYTTLLTGLC 460

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
               +D A EL  +M       +VV ++ L+  +C  G +++A +L   +   GC P+  
Sbjct: 461 HAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGCTPNLI 520

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTL 397
           ++NTL++  ++    EEAL L   ++S G+  D                I EA ++F  +
Sbjct: 521 TFNTLLDGITEDCNSEEALELLHGLVSKGISLDTITYSSIVDVLSREDRIEEAVQMFHAV 580

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
            +        ++N ++  LCK      A + F  +      PN  TY ++I GL  EG +
Sbjct: 581 QDMGMRPKAVMYNKILSALCKRCETDRAIDFFAHMVSNSCMPNESTYVILIEGLAREGLL 640

Query: 458 EKAYDLLPDM 467
           ++A  +L ++
Sbjct: 641 KEARYVLSEL 650



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 156/330 (47%), Gaps = 33/330 (10%)

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN 213
           +PDV     LIR LC +G+ ++A+ +               +V  Y +++ G C+ G ++
Sbjct: 67  APDVYLCTKLIRNLCRRGRTSDAARVLRTAEG----SGAPVDVFAYNTLVAGYCRYGRLD 122

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
             R L   M    + PDA+ Y  LIR  C        +G    AL L ++ +        
Sbjct: 123 AARRLIASMP---VPPDAYTYTPLIRGLC-------DRGRVGDALSLLDDMLRRE----- 167

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
            C P V++Y  ++ ++CK     +A ++  +M+++G  P++V Y+ +I+G C   R+DDA
Sbjct: 168 -CQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDA 226

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---------- 383
           R++   + S G  PDT SY T++      ++ E+   L+ EM+     P+          
Sbjct: 227 RQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRF 286

Query: 384 ---NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
                 +  A E+   +       + T+ N +++ +CK  R+  A+E    +  YG  P+
Sbjct: 287 FCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPD 346

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            ++YT ++ GLC  G  E A +LL +M  K
Sbjct: 347 TISYTTVLKGLCRAGRWEDAKELLNEMVRK 376



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 145/330 (43%), Gaps = 25/330 (7%)

Query: 51  TKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLS 110
           T +LK L    ++G  E  DA    N M+     P   +FN+ +  L  K      I L 
Sbjct: 351 TTVLKGLC---RAGRWE--DAKELLNEMVRKNCPPNEVTFNTFICILCQKGLIDQAILLI 405

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           E++   G     V+ N L+N FC    V  A      +      P+ +T   L+ GLC  
Sbjct: 406 EQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNSL---PCEPNTITYTTLLTGLCHA 462

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
            +   A+ L  + +  DC  NV+     +  ++   C+ GFV +   L   M   G  P+
Sbjct: 463 ERLDAAAELLAEMMQNDCPLNVVT----FNVLVSFFCQKGFVEEAIELVQQMMEHGCTPN 518

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
              +N+L+         ED   N+  ALEL    V+    L      D ++Y SI++ L 
Sbjct: 519 LITFNTLLDGI-----TEDC--NSEEALELLHGLVSKGISL------DTITYSSIVDVLS 565

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           ++  +++A ++F  ++  G+ P  V+Y+ ++   C     D A   F  + S  C+P+ S
Sbjct: 566 REDRIEEAVQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRAIDFFAHMVSNSCMPNES 625

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           +Y  LI   ++   ++EA  +  E+ S GV
Sbjct: 626 TYVILIEGLAREGLLKEARYVLSELCSRGV 655



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 17/189 (8%)

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           + +D L + A+ L     SRG  PDV + + LI   C  GR  DA ++  + E  G   D
Sbjct: 46  IARDDLAEAAR-LVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVD 104

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP-------------DNSCILEAAELFR 395
             +YNTL+  Y +  +++ A  L   + SM V P             D   + +A  L  
Sbjct: 105 VFAYNTLVAGYCRYGRLDAARRL---IASMPVPPDAYTYTPLIRGLCDRGRVGDALSLLD 161

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            +   + +  +  +  L++ +CKS     A ++  ++   G  PN+VTY V+I G+C E 
Sbjct: 162 DMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCRED 221

Query: 456 GIEKAYDLL 464
            ++ A  +L
Sbjct: 222 RVDDARQIL 230



 Score = 41.6 bits (96), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 31/166 (18%), Positives = 70/166 (42%), Gaps = 4/166 (2%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           + +A+     M+    TP + +FN+LL  +         + L   L + G+  D ++ + 
Sbjct: 500 VEEAIELVQQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGISLDTITYSS 559

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           +++   +   + +A      +      P  V    ++  LC + +   A   F   V+  
Sbjct: 560 IVDVLSREDRIEEAVQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRAIDFFAHMVSNS 619

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233
           C    +PN   Y  +I+GL ++G + + R +  ++  RG+   + +
Sbjct: 620 C----MPNESTYVILIEGLAREGLLKEARYVLSELCSRGVLSKSLI 661


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 119/404 (29%), Positives = 188/404 (46%), Gaps = 50/404 (12%)

Query: 120 PDFVSLNILMNCFCK--MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           P+ V  N L+N F +   +  + AFV   +++   + PDV T   L+ GLC +G F  A 
Sbjct: 344 PNVVHFNTLVNGFVRNGRLNEATAFV-YDKMINNGYVPDVFTFSTLVNGLCKKGLFGSAL 402

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            L     A  C+PN+      Y  +IDG CK G + +  ++  +M  +G   +   YN+L
Sbjct: 403 ELVNDMDAKGCKPNLNT----YTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNAL 458

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           I   C         G    AL++  E  +        C PD+ ++ S+I  LC+   ++ 
Sbjct: 459 ISALC-------KHGKIHEALDMFGEMSSKG------CKPDIFTFNSLIFGLCRVDEMED 505

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A  L+ DM   G+I + V +++LI  +   G I +A KL   +   GC  D  +YN LI 
Sbjct: 506 ALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIK 565

Query: 358 SYSKIEKVEEALSLYGEMISMGVRP---------DNSC----ILEAAELFRTLHNTKFEL 404
           +  K   VE+ L L+ EMI  G+ P         +  C    +  A E  R + +  F  
Sbjct: 566 ALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSP 625

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           D+  +N L++GLCK  R++ A  LF+KL   G +P+ +TY  +IC LC EG  + A    
Sbjct: 626 DIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDA---- 681

Query: 465 PDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDEN 508
                    C     LL++  +    P+++T +IL     K  N
Sbjct: 682 ---------CF----LLYRGVENGFVPNDVTWNILVYNFGKQSN 712



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 122/468 (26%), Positives = 223/468 (47%), Gaps = 59/468 (12%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E+++A      M      P    + +L+ AL+ +      + L E +  +G  PD  + N
Sbjct: 225 EVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFN 284

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            ++  FC++  V +    + R++ K F+P+ +T G L+ GLC   +  EA  L +K    
Sbjct: 285 TVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPG- 343

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD-MKGRGIYPDAFVYNSLIRVYCCAV 245
                  PNV+ + ++++G  ++G +N+      D M   G  PD F +++L+   C   
Sbjct: 344 -------PNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLC--- 393

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
                KG   +ALEL    VN     G  C P++ +Y  +I+  CK   +++A  +  +M
Sbjct: 394 ----KKGLFGSALEL----VNDMDAKG--CKPNLNTYTILIDGFCKKGQLEEAGLILREM 443

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
            ++G   + V Y++LI   C  G+I +A  +F  + S+GC PD  ++N+LI    +++++
Sbjct: 444 LTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEM 503

Query: 366 EEALSLYGEMISMGVRPD----NSCIL------EAAELFRTLHNTKFE---LDLTVFNCL 412
           E+AL+LY +M+  GV  +    N+ I       E  E  + +++  F    LD   +N L
Sbjct: 504 EDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGL 563

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM----- 467
           +  LCK+  +     LF+++ R G  P+++T  ++I G C  G +  A + + DM     
Sbjct: 564 IKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGF 623

Query: 468 ----------------EEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                             +I+E   A+ L  K+    ++PD IT + L
Sbjct: 624 SPDIVTYNSLINGLCKRGRIQE---ALNLFEKLQAEGIQPDSITYNTL 668



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 183/383 (47%), Gaps = 40/383 (10%)

Query: 67  ELNDALCF-FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
            LN+A  F ++ MI+    P + +F++L+  L  K  + + + L   ++  G  P+  + 
Sbjct: 361 RLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTY 420

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
            IL++ FCK   + +A + L  +L K FS + V    LI  LC  GK  EA  +F +  +
Sbjct: 421 TILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSS 480

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
             C+P++      + S+I GLC+   +     L+ DM   G+  ++  +N+LI  +    
Sbjct: 481 KGCKPDIFT----FNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFL--- 533

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
                +G    AL+L       N  L   C  D ++Y  +I +LCK   V+K   LF +M
Sbjct: 534 ----RRGEIQEALKLV------NDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEM 583

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
             +G+ P ++  + LI+G+C  G++ +A +    +   G  PD  +YN+LIN   K  ++
Sbjct: 584 IRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRI 643

Query: 366 EEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
           +EAL+L+ ++ + G++PD+                        +N L+  LC+      A
Sbjct: 644 QEALNLFEKLQAEGIQPDS----------------------ITYNTLICWLCREGAFDDA 681

Query: 426 WELFKKLPRYGPEPNVVTYTVMI 448
             L  +    G  PN VT+ +++
Sbjct: 682 CFLLYRGVENGFVPNDVTWNILV 704



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 161/339 (47%), Gaps = 51/339 (15%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P+   Y  ++D L      +    +F DM  +G+ P+ + +  +++   C VN  D    
Sbjct: 173 PSFRSYNVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKAL-CMVNEVD---- 227

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
            +A L L +   +G       C P+ + Y ++I++L K   VD+A +L  +M   G  PD
Sbjct: 228 -NACLLLRDMTKHG-------CVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPD 279

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL-- 371
           V  ++++I G+C + R+ +  KL   +  +G  P+  +Y  L++   K  +++EA +L  
Sbjct: 280 VNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLS 339

Query: 372 ---------YGEMISMGVRPDNSCILEA-AELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
                    +  +++  VR  N  + EA A ++  + N  +  D+  F+ LV+GLCK   
Sbjct: 340 KVPGPNVVHFNTLVNGFVR--NGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGL 397

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM-------------- 467
             SA EL   +   G +PN+ TYT++I G C +G +E+A  +L +M              
Sbjct: 398 FGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNA 457

Query: 468 -------EEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                    KI E   A+++  +M+ +  KPD  T + L
Sbjct: 458 LISALCKHGKIHE---ALDMFGEMSSKGCKPDIFTFNSL 493



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 125/286 (43%), Gaps = 17/286 (5%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
            +N+L+ AL         + +   +++ G  PD  + N L+   C++  + DA      +
Sbjct: 454 GYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDM 513

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
           + +    + VT   LI     +G+  EA  L    +   C  + I     Y  +I  LCK
Sbjct: 514 VLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEIT----YNGLIKALCK 569

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
            G V K   LF +M  +G+ P     N LI  +C A       G    ALE   + ++  
Sbjct: 570 TGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTA-------GKVHNALEFMRDMIHRG 622

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                   PD+++Y S+IN LCK   + +A  LF  +++ GI PD + Y++LI   C  G
Sbjct: 623 ------FSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREG 676

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
             DDA  L       G +P+  ++N L+ ++ K    E     Y +
Sbjct: 677 AFDDACFLLYRGVENGFVPNDVTWNILVYNFGKQSNSEGQTITYAQ 722



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 125/280 (44%), Gaps = 36/280 (12%)

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
           C P   SY  +++ L        A  +F DM S+G+ P+   +  ++   C++  +D+A 
Sbjct: 171 CEPSFRSYNVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNAC 230

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCILEA 390
            L   +   GC+P++  Y TLI++ SK ++V+EAL L  EM  MG  PD    N+ I   
Sbjct: 231 LLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGF 290

Query: 391 AELFRTLHNTK---------FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
             L R L   K         F  +   +  L+ GLCK+ R+  A  L  K+    P PNV
Sbjct: 291 CRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKV----PGPNV 346

Query: 442 VTYTVMICGLCIEGGIEKA----YD------LLPDMEE---------KIRECLKAIELLH 482
           V +  ++ G    G + +A    YD       +PD+           K      A+EL++
Sbjct: 347 VHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVN 406

Query: 483 KMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
            M  +  KP+  T +IL +   K     E   +L   L++
Sbjct: 407 DMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTK 446



 Score = 46.2 bits (108), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++++AL F   MIH   +P + ++NSL+  L  +      + L E+L   G+ PD ++ N
Sbjct: 607 KVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYN 666

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+   C+     DA   L R +   F P+ VT   L+      GK + + G    +  F
Sbjct: 667 TLICWLCREGAFDDACFLLYRGVENGFVPNDVTWNILVYNF---GKQSNSEGQTITYAQF 723


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 131/473 (27%), Positives = 219/473 (46%), Gaps = 59/473 (12%)

Query: 91  NSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILR 150
           N+LLGA+    +      + E     G + +  +LNI++N  CK   + +  V L  +  
Sbjct: 193 NALLGAIVKVGWVDLAWKVYEDFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEE 252

Query: 151 KVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP--NVIPNVICYASIIDGLCK 208
           K    D+VT   L+   C +G  +EA GL       DC     + P +  Y ++I+GLCK
Sbjct: 253 KGVYADLVTYNTLVNAYCRRGLVSEAFGL------VDCMAGKGLKPGLFTYNALINGLCK 306

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN-WEDAKGNTSAALELHEEFVNG 267
           +G   + + +  +M G G+ P+A  +N ++   C   + WE             E   N 
Sbjct: 307 EGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWE------------AERVFNE 354

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
             + GV+  PD++S+ SI+    ++  + +A   F  MK  G++PD V+Y+ LI+GYC  
Sbjct: 355 MLQRGVV--PDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRN 412

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---- 383
             +  A K+   +   GC+ D  +YNTL+N   + + +++A  L+ EM+  GV PD    
Sbjct: 413 DDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTL 472

Query: 384 ---------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
                    +  + +A  LF T+     + D+  +N L+DG CK   +  A EL+  +  
Sbjct: 473 TTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMIS 532

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-IRECL-----------------K 476
               P+ ++++++I G C  G + +A+ L  +M+EK I+  L                 K
Sbjct: 533 REIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSK 592

Query: 477 AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKL 529
           A + L+ M    V PD IT + L     K+EN          FL  N EE  L
Sbjct: 593 ANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAF-----FLINNMEERGL 640



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 128/492 (26%), Positives = 216/492 (43%), Gaps = 87/492 (17%)

Query: 104 VNFICLSERLNTIGLL----------PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVF 153
           VN +C   +L+ +G+            D V+ N L+N +C+   VS+AF  +  +  K  
Sbjct: 231 VNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGL 290

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN---------------------- 191
            P + T   LI GLC +G +  A  +  + +     PN                      
Sbjct: 291 KPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAER 350

Query: 192 ---------VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
                    V+P++I ++SI+    ++G + +    F  MKG G+ PD  +Y  LI  YC
Sbjct: 351 VFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYC 410

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
                     + S AL++  E V    E G  C  DV++Y +++N LC+  ++D A ELF
Sbjct: 411 -------RNDDVSGALKMRNEMV----ERG--CVMDVVTYNTLLNGLCRGKMLDDADELF 457

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
            +M  RG+ PD    ++LI GYC  G +  A  LF ++      PD  +YNTL++ + K+
Sbjct: 458 KEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKV 517

Query: 363 EKVEEALSLYGEMISMGVRP---------DNSCIL----EAAELFRTLHNTKFELDLTVF 409
            ++E+A  L+ +MIS  + P         +  C L    EA  L+  +     +  L   
Sbjct: 518 GEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTC 577

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           N ++ G  ++  L  A +    +   G  P+ +TY  +I     E   ++A+ L+ +MEE
Sbjct: 578 NTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEE 637

Query: 470 ------------------KIRECLKAIELLHKMAKRYVKPDEIT-VSILEELLNKDENCH 510
                             +     +A  +LHKM  + + PD+ T  S++   ++KD N  
Sbjct: 638 RGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKD-NMK 696

Query: 511 ECMNLLPSFLSR 522
           E   +    L R
Sbjct: 697 EAFRVHDEMLQR 708



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 180/396 (45%), Gaps = 39/396 (9%)

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           FN M+     P + SF+S++G  +        +   E++  +GL+PD V   IL+N +C+
Sbjct: 352 FNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCR 411

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
              VS A      ++ +    DVVT   L+ GLC      +A  LF + V       V P
Sbjct: 412 NDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMV----ERGVFP 467

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           +     ++I G CKDG + K   LF  M  R + PD   YN+L+  +C     E AK   
Sbjct: 468 DFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAK--- 524

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
               EL  + ++          P  +S+  +IN  C   LV +A  L+ +MK +GI P +
Sbjct: 525 ----ELWYDMISRE------IFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTL 574

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           V  +++I GY   G +  A     ++ SEG  PD  +YNTLINS+ K E  + A  L   
Sbjct: 575 VTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINN 634

Query: 375 MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
           M   G+ P                      +L  +N ++ G  +  R++ A  +  K+  
Sbjct: 635 MEERGLLP----------------------NLVTYNAILGGFSRHGRMQEAEMVLHKMID 672

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            G  P+  TYT +I G   +  +++A+ +  +M ++
Sbjct: 673 KGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQR 708



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 165/318 (51%), Gaps = 17/318 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +++ AL   N M+       + ++N+LL  L   K   +   L + +   G+ PDF +L 
Sbjct: 414 DVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLT 473

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ +CK   ++ A      +  +   PDVVT   L+ G C  G+  +A  L+   ++ 
Sbjct: 474 TLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISR 533

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           +    + P+ I ++ +I+G C  G V++   L+ +MK +GI P     N++I+ Y  A  
Sbjct: 534 E----IFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRA-- 587

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                GN S A     +F+N     GV   PD ++Y ++INS  K+   D+A  L  +M+
Sbjct: 588 -----GNLSKA----NDFLNTMISEGV--PPDCITYNTLINSFVKEENFDRAFFLINNME 636

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            RG++P++V Y++++ G+   GR+ +A  +   +  +G  PD S+Y +LIN Y   + ++
Sbjct: 637 ERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMK 696

Query: 367 EALSLYGEMISMGVRPDN 384
           EA  ++ EM+  G  PD+
Sbjct: 697 EAFRVHDEMLQRGFVPDD 714



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 144/332 (43%), Gaps = 48/332 (14%)

Query: 239 RVYCCAVNWEDA-------KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
           R +C ++N  +A        G    A +++E+FV     +      +V +   ++N+LCK
Sbjct: 183 RGFCVSINACNALLGAIVKVGWVDLAWKVYEDFVKSGNIV------NVYTLNIMVNALCK 236

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
           D  +D       +M+ +G+  D+V Y++L++ YC  G + +A  L   +  +G  P   +
Sbjct: 237 DGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFT 296

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPD---------NSC----ILEAAELFRTLH 398
           YN LIN   K    E A  +  EM+ +G+ P+          SC    + EA  +F  + 
Sbjct: 297 YNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEML 356

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
                 DL  F+ +V    ++  L  A   F+K+   G  P+ V YT++I G C    + 
Sbjct: 357 QRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVS 416

Query: 459 KAYDLLPDMEEKIRECL--------------------KAIELLHKMAKRYVKPDEITVSI 498
            A  +  +M E  R C+                     A EL  +M +R V PD  T++ 
Sbjct: 417 GALKMRNEMVE--RGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTT 474

Query: 499 LEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           L     KD N  + ++L  +   R+ +   +T
Sbjct: 475 LIHGYCKDGNMTKALSLFETMTLRSLKPDVVT 506


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 122/447 (27%), Positives = 201/447 (44%), Gaps = 56/447 (12%)

Query: 92  SLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRK 151
           +++     + Y V    L  ++  +G+ P   + N LM+  CK   + +    L ++L+ 
Sbjct: 186 TVISGFYEENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKN 245

Query: 152 VFSPDVVTLGCLIRGLCMQG-------KFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
              P++ T    I+GLC +G       K  EA     K V       + P+   Y +II 
Sbjct: 246 GVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMV----NKGLEPDDFTYNTIIY 301

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           G  K G +     +  D K +G  PD F Y SLI   C         G+   AL L EE 
Sbjct: 302 GYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVC-------QDGDIDHALALFEE- 353

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
                 LG    P ++ Y ++I  L +  LV KA +L  DM   G+ PD+  Y+ +I+G 
Sbjct: 354 -----ALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGL 408

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD- 383
           C MG + DA  L  +  ++G +PD  ++NTLI+ Y K  K++ A+ +   M S GV PD 
Sbjct: 409 CKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDV 468

Query: 384 ---NSCI---------LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
              NS +          +  E F+ +       ++  +N L++ LCK+ ++  A +L ++
Sbjct: 469 ITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEE 528

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLK--------------- 476
           +   G  P+ V++  +I G C  G +++AY L   ME++ R C                 
Sbjct: 529 IRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMINAFSEKL 588

Query: 477 ----AIELLHKMAKRYVKPDEITVSIL 499
               A +L H+M  +   PD  T  ++
Sbjct: 589 DMDMAQKLFHEMGDKGCDPDSYTYRVM 615



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 130/495 (26%), Positives = 229/495 (46%), Gaps = 72/495 (14%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           +A   FN M+ +   P + +FN L+  L  K +      L  ++   G+ P+  + NI +
Sbjct: 199 EAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFI 258

Query: 130 NCFCK---MIGVSDAFVA----LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF-- 180
              C+   + G +   V     L +++ K   PD  T   +I G    GK  +AS +   
Sbjct: 259 QGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKD 318

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR- 239
            KF  F      +P+   Y S+I G+C+DG ++    LF +  G+G+ P   +YN+LI+ 
Sbjct: 319 AKFKGF------VPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKG 372

Query: 240 -------VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH--------------PD 278
                  +    +  + +K   S  +  +   +NG  ++G +                PD
Sbjct: 373 LSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPD 432

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
           + ++ ++I+  CK + +D A  +   M S G+ PDV+ Y+S+++G C   + +D  + F 
Sbjct: 433 IFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFK 492

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NS 385
            I  +GC+P+  +YN LI S  K  KV EAL L  E+ + G+ PD             N 
Sbjct: 493 MIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNG 552

Query: 386 CILEAAELFRTLHNTKFELDLTV--FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
            + EA +LFR +   ++ +  TV  +N +++   +   +  A +LF ++   G +P+  T
Sbjct: 553 DLDEAYQLFRRMEQ-QYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYT 611

Query: 444 YTVMICGLCIEGGIEKAYD-LLPDME----------EKIRECL-------KAIELLHKMA 485
           Y VMI G C  G +   YD LL ++E           ++  CL       +A+ ++H M 
Sbjct: 612 YRVMIDGFCKVGNVNSGYDFLLKEIEIGFVPSLTTFGRVINCLCVQHRVHEAVGIVHLMV 671

Query: 486 KRYVKPDEITVSILE 500
           +  V P E  V+I +
Sbjct: 672 RTGVVP-EAVVTIFD 685



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 169/378 (44%), Gaps = 40/378 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +++ AL  F   +     P +  +N+L+  L+ +   +  + L   ++  G+ PD  + N
Sbjct: 343 DIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYN 402

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +++N  CKM  VSDA   L   + K + PD+ T   LI G C + K   A G+     + 
Sbjct: 403 LVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSH 462

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                V P+VI Y SI++GLCK      V   F  +  +G  P+   YN LI   C A  
Sbjct: 463 ----GVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKA-- 516

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                   + AL+L EE  N     G+I  PD +S+ ++I+  C +  +D+A +LF  M+
Sbjct: 517 -----RKVTEALDLLEEIRN----RGLI--PDPVSFGTVISGFCNNGDLDEAYQLFRRME 565

Query: 307 SR-GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
            +  I   V  Y+ +I+ +     +D A+KLF  +  +GC PD+ +Y  +I+ + K+  V
Sbjct: 566 QQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNV 625

Query: 366 EEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
                   + I +G  P                       LT F  +++ LC   R+  A
Sbjct: 626 NSGYDFLLKEIEIGFVP----------------------SLTTFGRVINCLCVQHRVHEA 663

Query: 426 WELFKKLPRYGPEPNVVT 443
             +   + R G  P  V 
Sbjct: 664 VGIVHLMVRTGVVPEAVV 681



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 118/460 (25%), Positives = 176/460 (38%), Gaps = 75/460 (16%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTL---------- 160
           ER++     P   S N +MN   +    + A     R+  +  +PDV T           
Sbjct: 100 ERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGIAPDVCTFTIRIKSFCRT 159

Query: 161 ----------------GC---------LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPN 195
                           GC         +I G   +    EA  LF K +    R  + P+
Sbjct: 160 KRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVEAYELFNKML----RLGIFPH 215

Query: 196 VICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTS 255
           +  +  ++  LCK G + +   L   +   G+ P+ F +N  I+  C     E A     
Sbjct: 216 IATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVV 275

Query: 256 AALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV 315
            A     + VN   E      PD  +Y +II    K   +  A  +  D K +G +PD  
Sbjct: 276 EAENYLHKMVNKGLE------PDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEF 329

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
            Y SLI G C  G ID A  LF     +G  P    YNTLI   S+   V +AL L  +M
Sbjct: 330 TYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDM 389

Query: 376 ISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRL 422
              G+ PD               C+ +A  L        +  D+  FN L+DG CK  ++
Sbjct: 390 SKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKM 449

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLH 482
            +A  +   +  +G  P+V+TY  ++ GLC     E   +    + EK   CL       
Sbjct: 450 DNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEK--GCL------- 500

Query: 483 KMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
                   P+ IT +IL E L K     E ++LL    +R
Sbjct: 501 --------PNIITYNILIESLCKARKVTEALDLLEEIRNR 532



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 148/327 (45%), Gaps = 37/327 (11%)

Query: 164 IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
           +R    +GK  EA  +F +   ++C P++      Y +I++ L + G+ N+   ++L MK
Sbjct: 83  MRNYGRKGKVQEAVDVFERMDFYNCEPSIFS----YNAIMNILVEYGYFNQAHKVYLRMK 138

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
             GI PD   +   I+ +C             AAL L    +N     G  C  + + YC
Sbjct: 139 HEGIAPDVCTFTIRIKSFC-------RTKRPLAALRL----LNNMPSQG--CELNAVVYC 185

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
           ++I+   ++    +A ELF  M   GI P +  ++ L+   C  G + +  KL   +   
Sbjct: 186 TVISGFYEENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKN 245

Query: 344 GCIPDTSSYNTLINSYSKI-------EKVEEALSLYGEMISMGVRPDN----------SC 386
           G  P+  ++N  I    +         KV EA +   +M++ G+ PD+          S 
Sbjct: 246 GVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSK 305

Query: 387 ILEAAELFRTLHNTKFE---LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
           + +  +  R L + KF+    D   +  L+ G+C+   +  A  LF++    G +P++V 
Sbjct: 306 VGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVL 365

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEK 470
           Y  +I GL  +G + KA  L+ DM ++
Sbjct: 366 YNTLIKGLSQQGLVLKALQLMNDMSKE 392



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 126/270 (46%), Gaps = 43/270 (15%)

Query: 233 VYNSLIR-VYCCAVNWEDAKGNTSAALELHE--EFVNGNGELGVICHPDVLSYCSIINSL 289
           V NSL+  VY  A+     KG    A+++ E  +F N        C P + SY +I+N L
Sbjct: 70  VDNSLLEGVYVSAMRNYGRKGKVQEAVDVFERMDFYN--------CEPSIFSYNAIMNIL 121

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
            +    ++A +++L MK  GI PDV  ++  I  +C   R   A +L  ++ S+GC  + 
Sbjct: 122 VEYGYFNQAHKVYLRMKHEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNA 181

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVF 409
             Y T+I+ + +     EA  L+ +M+ +G+ P                       +  F
Sbjct: 182 VVYCTVISGFYEENYQVEAYELFNKMLRLGIFP----------------------HIATF 219

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           N L+  LCK   L+   +L  K+ + G  PN+ T+ + I GLC +G +E A         
Sbjct: 220 NKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANS------- 272

Query: 470 KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
              + ++A   LHKM  + ++PD+ T + +
Sbjct: 273 ---KVVEAENYLHKMVNKGLEPDDFTYNTI 299


>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
          Length = 798

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 130/506 (25%), Positives = 221/506 (43%), Gaps = 94/506 (18%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +N A     +M      P   ++N ++            + L ++++  GL PD V+  +
Sbjct: 254 MNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYIL 313

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL-------- 179
           L+  +CK+   ++A      ++RK   P+      L+ G   +G   +   L        
Sbjct: 314 LIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDG 373

Query: 180 --------------FTKFVAFD--------CRPNVI-PNVICYASIIDGLCKDGFVNKVR 216
                         + K  A D         R N + P+V+ Y+++I  LCK G V    
Sbjct: 374 IPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAV 433

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
             F  M   G+ P+   + SLI   C    W+  +       EL  E +N         H
Sbjct: 434 YHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVE-------ELAFEMINRG------IH 480

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PD +   +I+++LCK+  V +A++ F  +   G+ P+VV Y++LIDGYC +G++D++ K 
Sbjct: 481 PDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQ 540

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP-------------- 382
           F  + S G  PD+ +YN L+N Y K  +VE+AL+LY EM    V+               
Sbjct: 541 FDRMVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQ 600

Query: 383 ----------------------------------DNSCILEAAELFRTLHNTKFELDLTV 408
                                             +NSC+ EA  +F  L + +FELD+  
Sbjct: 601 AGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVWT 660

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           FN +++ L K  R+  A  LF  +   GP P+V+TY++MI     EG +E++ DL   ME
Sbjct: 661 FNIVINALLKVGRIDEAKSLFSAMVLRGPVPHVITYSLMIKSRIEEGLLEESDDLFLSME 720

Query: 469 EKIRECLKAIELLHKMAKRYVKPDEI 494
           +    C     +L+ + +R ++  ++
Sbjct: 721 KN--GCAADSHMLNVIIRRLLEKGDV 744



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 127/493 (25%), Positives = 223/493 (45%), Gaps = 52/493 (10%)

Query: 52  KLLKYLSENSKSGEVELNDAL-CFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLS 110
           +L+K L +  ++     +DA+   F  M  +  TP + S+N+L+  L  +K     + L 
Sbjct: 134 QLIKGLCDGKRT-----DDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELL 188

Query: 111 ERLNTIGLL---PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGL 167
             +   G     P+ VS + +++ F K   V  A+     ++ + F PDVVT   LI GL
Sbjct: 189 LHMTADGGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGL 248

Query: 168 CMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI 227
           C      +A  +      FD    V+PN   Y  +I G C  G + +   L   M G G+
Sbjct: 249 CKAQAMNKAEAILQHM--FD--KGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGL 304

Query: 228 YPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE--------LHEEFVNGNGELGVICH-PD 278
            PD   Y  LI+ YC      +A+    + +         ++   ++G    G +    D
Sbjct: 305 QPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRD 364

Query: 279 VL-------------SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
           +L             ++  +I +  K   VDKA   F +M+  G+ PDVV YS++I   C
Sbjct: 365 LLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILC 424

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP--- 382
            +GR++DA   F  + SEG  P+  S+ +LI+    I + ++   L  EMI+ G+ P   
Sbjct: 425 KIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAI 484

Query: 383 ------DNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
                 DN C    ++EA + F  + +   + ++  +N L+DG C   ++  + + F ++
Sbjct: 485 FMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRM 544

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-IREC-LKAIELLHKM--AKRY 488
              G  P+  TY  ++ G    G +E A  L  +M  K ++ C + +  +LH +  A R 
Sbjct: 545 VSIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGRI 604

Query: 489 VKPDEITVSILEE 501
           V   E+ + +++ 
Sbjct: 605 VAARELYMKMVDR 617



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 128/524 (24%), Positives = 211/524 (40%), Gaps = 90/524 (17%)

Query: 52  KLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALA----------GKK 101
           +L + +    +SG +   DAL  F+ ++       + +FNS+L  +A             
Sbjct: 14  ELERIILNRHRSGSLGREDALNLFDELLPQARPASVHAFNSVLTVVARADSSSSPRHSAA 73

Query: 102 YYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLG 161
             V+      R     +  +   + IL+ CFC +  +  AF A    L+  +    VTL 
Sbjct: 74  LAVSLFNTMARSGVNMMAANRYIIGILIRCFCTVGRLDLAFAAFALFLKMGWRVQNVTLN 133

Query: 162 CLIRGLCMQGKFTEAS--GLFTKFVAFDCRPNVI-------------------------- 193
            LI+GLC  GK T+ +   +F +       P+V                           
Sbjct: 134 QLIKGLC-DGKRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLHMT 192

Query: 194 --------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
                   PNV+ Y++IIDG  K+G V+K   LF +M G+G  PD   Y+SLI   C   
Sbjct: 193 ADGGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLC--- 249

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
               A+    A   L   F  G         P+  +Y  +I   C    +++A  L   M
Sbjct: 250 ---KAQAMNKAEAILQHMFDKG-------VMPNTRTYNIMIRGYCSLGQLEEAVRLLKKM 299

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
              G+ PDVV Y  LI  YC +GR  +AR +F S+  +G  P+++ Y+ L++ Y+    +
Sbjct: 300 SGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGAL 359

Query: 366 EEALSLYGEMISMGV-------------RPDNSCILEAAELFRTLHNTKFELDLTVFNCL 412
            +   L   MI  G+                +  + +A   F  +       D+  ++ +
Sbjct: 360 IDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTV 419

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIR 472
           +  LCK  R+  A   F ++   G  PN++++T +I GLC                  I 
Sbjct: 420 IHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLC-----------------SIG 462

Query: 473 ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           E  K  EL  +M  R + PD I ++ + + L K+    E  +  
Sbjct: 463 EWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFF 506



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 113/246 (45%), Gaps = 43/246 (17%)

Query: 284 SIINSLCKDVLVDKAKEL-FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
            +I  LC     D A ++ F  M   G  PDV  Y++LI G C+  +  +A +L + + +
Sbjct: 134 QLIKGLCDGKRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLHMTA 193

Query: 343 EG---CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN 399
           +G   C P+  SY+T+I+ + K  +V++A  L+ EMI  G  PD                
Sbjct: 194 DGGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPD---------------- 237

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
                 +  ++ L+DGLCK+  +  A  + + +   G  PN  TY +MI G C  G +E+
Sbjct: 238 ------VVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEE 291

Query: 460 AYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519
           A                 + LL KM+   ++PD +T  +L +   K   C E  ++  S 
Sbjct: 292 A-----------------VRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSM 334

Query: 520 LSRNQE 525
           + + Q+
Sbjct: 335 VRKGQK 340


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 176/385 (45%), Gaps = 40/385 (10%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + ++N+L+  L+      + + L E +   GL PD ++ N +++  CK   + DA   
Sbjct: 471 PTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNV 530

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
             R L +   P+VVT   LI GL    K  EA  L  K V   CR N +     Y++++D
Sbjct: 531 FKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVT----YSTVVD 586

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           GL K G +    V+   M+  G  PDA  YN+LI  +       +A G     LE     
Sbjct: 587 GLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAG--- 643

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
                      HP V++Y ++ + LC+    D+A E+   M +RG  P+ + YSS++DG 
Sbjct: 644 ----------FHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGL 693

Query: 325 CLMGRIDDARKLFVSIESEGCI-PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           C  GR+ +A   F  +  +  + P   +Y+ LI+   K  +++EA      MI  G  P 
Sbjct: 694 CKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIP- 752

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                                D+  F+ L++GLC + R+ +  ELF  +   G + ++  
Sbjct: 753 ---------------------DVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYA 791

Query: 444 YTVMICGLCIEGGIEKAYDLLPDME 468
           Y  MI   C++G    AY LL +M+
Sbjct: 792 YNAMINAYCLKGEFSAAYALLEEMK 816



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/310 (33%), Positives = 154/310 (49%), Gaps = 39/310 (12%)

Query: 157 VVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVR 216
           +VT   LI GLC  G+  +A   F K + F  RP V+     Y+++IDGLC+D  V+K  
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVT----YSTVIDGLCRDNEVDKGC 56

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            L  +M GRG  P+A  YN+L       VN    +G    A  L E     NG     C 
Sbjct: 57  KLLEEMAGRGCAPNAVTYNTL-------VNALLGQGRAKEAFSLLERMA-ANG-----CP 103

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+++++  II  LCK+  ++ A  +  +M  RG +PDV +++ L+   C +GR+D+A   
Sbjct: 104 PELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFF 163

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
           F  +   G  PD  +YNT+++   K  ++E A    G ++ +            AE F +
Sbjct: 164 FQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAA----GMVLQL-----------LAESFSS 208

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
              T F      F   VDGL K+  L  A+E F  +P+ G  PN VTY  +I GLC  G 
Sbjct: 209 --PTVF-----TFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGK 261

Query: 457 IEKAYDLLPD 466
           ++ A  LL D
Sbjct: 262 LDIALGLLRD 271



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 139/525 (26%), Positives = 221/525 (42%), Gaps = 88/525 (16%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           SKSG V   DAL    +MI    +P + +FNS+L  L  ++  ++   + +R    G  P
Sbjct: 484 SKSGMVR--DALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRP 541

Query: 121 DFVSLNILMNCFCKMI-------------------------GVSDAFVALGR------IL 149
           + V+ + L++   KM                           V D  + +GR      +L
Sbjct: 542 NVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVL 601

Query: 150 RKVFS----PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDG 205
           R++      PD VT   LI G   + +  EA GL  + +         P+V+ Y ++  G
Sbjct: 602 RQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREML----EAGFHPSVVTYTTLCHG 657

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
           LC+ G  ++   +   M  RG  P+A  Y+S++   C A       G  + AL   E+  
Sbjct: 658 LCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKA-------GRVTEALGYFEKMA 710

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
                   +  P V++Y ++I+ LCK   +D+A E    M   G IPDVV +S LI+G C
Sbjct: 711 RDE-----VVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLC 765

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-- 383
             GRID   +LF  +   GC  D  +YN +IN+Y    +   A +L  EM + G+  +  
Sbjct: 766 DAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTV 825

Query: 384 -----------NSCILEAAELFRTL-HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
                      N  I EA   F ++  + + E+    +N L+  L  S R   A EL + 
Sbjct: 826 THGIVIKALCGNDRIDEAVSYFHSIPEDCRDEIS---YNTLITSLVASRRSEQALELLRA 882

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME------------------EKIRE 473
           +   G  P+   Y  ++ GL   G  E A  LL +M                    K ++
Sbjct: 883 MVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQ 942

Query: 474 CLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPS 518
              A +   +M ++ +KPD I  S L +   K +   +   LL S
Sbjct: 943 LPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLLRS 987



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 127/488 (26%), Positives = 206/488 (42%), Gaps = 100/488 (20%)

Query: 81  MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSD 140
           M   P +  FNSL+  L   +       L + +   G   D ++ NIL+   CK+  + +
Sbjct: 304 MPCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPE 363

Query: 141 AFVALGRILRKV--FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV-------------- 184
           A+  +  ++R+    SP+VVT   LI+GLC  G+  +A  ++ + V              
Sbjct: 364 AYRHV-ELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAF 422

Query: 185 -------AFDCR------------------------PNV--------IPNVICYASIIDG 205
                  A D R                        P V         P ++ Y +++ G
Sbjct: 423 LLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTG 482

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
           L K G V     L   M   G+ PD   +NS++   C      DA      ALE      
Sbjct: 483 LSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERG---- 538

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
                    C P+V++Y ++I+ L K   +D+A +L   M   G   + V YS+++DG  
Sbjct: 539 ---------CRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLL 589

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-- 383
            +GR++DA  +   +   GC+PD  +YNTLI+ + K +++ EA+ L  EM+  G  P   
Sbjct: 590 KVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVV 649

Query: 384 -----------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
                      +    EA E+   +       +   ++ +VDGLCK+ R+  A   F+K+
Sbjct: 650 TYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKM 709

Query: 433 PR-YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKP 491
            R     P+V+ Y+ +I GLC  G I++AY                 E L +M +    P
Sbjct: 710 ARDEVVAPHVIAYSALIDGLCKAGRIDEAY-----------------EFLERMIRAGRIP 752

Query: 492 DEITVSIL 499
           D +T SIL
Sbjct: 753 DVVTFSIL 760



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 134/517 (25%), Positives = 209/517 (40%), Gaps = 108/517 (20%)

Query: 66   VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
             ++++AL     M+ +       ++++++  L       + + +  ++   G LPD V+ 
Sbjct: 557  AKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTY 616

Query: 126  NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
            N L++ F K   + +A   L  +L   F P VVT   L  GLC  G+F EA  +     A
Sbjct: 617  NTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAA 676

Query: 186  FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM-KGRGIYPDAFVYNSLIRVYCCA 244
              C PN I     Y+SI+DGLCK G V +    F  M +   + P    Y++LI   C A
Sbjct: 677  RGCAPNAIT----YSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKA 732

Query: 245  VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                   G    A E  E  +      G I  PDV+++  +IN LC    +D   ELF  
Sbjct: 733  -------GRIDEAYEFLERMIRA----GRI--PDVVTFSILINGLCDAGRIDTGLELFCG 779

Query: 305  MKSRGIIPDVVVYSSLIDGYCLMG-----------------------------------R 329
            M  RG   D+  Y+++I+ YCL G                                   R
Sbjct: 780  MAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDR 839

Query: 330  IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN----- 384
            ID+A   F SI  E C  D  SYNTLI S     + E+AL L   M++ G  PD      
Sbjct: 840  IDEAVSYFHSI-PEDC-RDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMT 897

Query: 385  -------------------------------------SCILEAAEL------FRTLHNTK 401
                                                 S + +A +L      F  +    
Sbjct: 898  VMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKN 957

Query: 402  FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
             + D  V++ L+D  CK+ ++  AW+L +     G EP +  Y+ M+  LC   G +KA 
Sbjct: 958  LKPDAIVYSSLIDAFCKADKVDDAWKLLRS---SGIEPTITMYSTMVDSLCKNRGTDKAL 1014

Query: 462  DLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSI 498
            +++ +M+ K   C   I +   +A  YV    +  ++
Sbjct: 1015 EVIREMKSK--NCEPGIHIWTSLATAYVAEGRVDEAV 1049



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 106/440 (24%), Positives = 195/440 (44%), Gaps = 49/440 (11%)

Query: 67   ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
             L +A+     M+     P + ++ +L   L     +   + + + +   G  P+ ++ +
Sbjct: 628  RLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYS 687

Query: 127  ILMNCFCKMIGVSDAFVALGRILR-KVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
             +++  CK   V++A     ++ R +V +P V+    LI GLC  G+  EA     + + 
Sbjct: 688  SIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMI- 746

Query: 186  FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
               R   IP+V+ ++ +I+GLC  G ++    LF  M  RG   D + YN++I  YC   
Sbjct: 747  ---RAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCL-- 801

Query: 246  NWEDAKGNTSAALELHEEFVNGNGELGVICHP---------------------------D 278
                 KG  SAA  L EE          + H                            D
Sbjct: 802  -----KGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDCRD 856

Query: 279  VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
             +SY ++I SL      ++A EL   M + G  PD   Y +++DG    G  + A KL  
Sbjct: 857  EISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQ 916

Query: 339  SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---SCILEA----- 390
             + S G  PD  +Y  +I+  SK +++  A   + EM+   ++PD    S +++A     
Sbjct: 917  EMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKAD 976

Query: 391  --AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
               + ++ L ++  E  +T+++ +VD LCK+     A E+ +++     EP +  +T + 
Sbjct: 977  KVDDAWKLLRSSGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWTSLA 1036

Query: 449  CGLCIEGGIEKAYDLLPDME 468
                 EG +++A  L+ D++
Sbjct: 1037 TAYVAEGRVDEAVKLVNDLQ 1056



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 108/420 (25%), Positives = 188/420 (44%), Gaps = 39/420 (9%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G V   DA   F   I     P + ++++++  L           L E +   G  P+
Sbjct: 13  KAGRV--CDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGRGCAPN 70

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+ N L+N         +AF  L R+      P+++T G +I+GLC +G+   A  +  
Sbjct: 71  AVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVD 130

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           + V        +P+V  +  ++  LC+ G V++    F  +   G  PDA  YN+++   
Sbjct: 131 EMV----DRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGL 186

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
             A   E A       L+L  E  +          P V ++   ++ L K   +  A E 
Sbjct: 187 YKAGRLEAA----GMVLQLLAESFS---------SPTVFTFTIAVDGLSKAGNLTGAYEF 233

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F  M   G+ P+ V Y +LIDG C  G++D A  L     S+  +    ++++L++   +
Sbjct: 234 FDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQAGM---FAFSSLLHGLCQ 290

Query: 362 IEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDLTV 408
             ++EEA+ L   + +M   P+  C             + EA ELF  +  +    D+  
Sbjct: 291 AHRLEEAIQL---LKAMPCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVIT 347

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRY-GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +N L+ GLCK  R+  A+   + + R  G  PNVVT++ +I GLC  G + +A+++   M
Sbjct: 348 YNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERM 407



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 99/419 (23%), Positives = 175/419 (41%), Gaps = 72/419 (17%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
            P   ++N+L+ AL G+        L ER+   G  P+ ++  +++   CK   +  AF 
Sbjct: 68  APNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFR 127

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI---------- 193
            +  ++ + F PDV     L+  LC  G+  EA   F + +     P+ +          
Sbjct: 128 VVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLY 187

Query: 194 ---------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
                                P V  +   +DGL K G +      F  M   G+ P+  
Sbjct: 188 KAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTV 247

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            Y++LI   C A       G    AL L     + N + G+       ++ S+++ LC+ 
Sbjct: 248 TYDALIDGLCKA-------GKLDIALGL---LRDKNSQAGM------FAFSSLLHGLCQA 291

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             +++A +L   +K+   +P+VV ++SL++G C   R+D+A +LF  ++  GC  D  +Y
Sbjct: 292 HRLEEAIQL---LKAMPCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITY 348

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCL 412
           N L+    K+ ++ EA                       EL R         ++  F+ L
Sbjct: 349 NILLKGLCKLRRIPEA-------------------YRHVELMRRTEGCS--PNVVTFSTL 387

Query: 413 VDGLCKSWRLRSAWELFKKLPRY-GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           + GLC + R+  AWE+++++    G  PN  TY  ++ GLC  G   +       M E+
Sbjct: 388 IQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLER 446



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 101/207 (48%), Gaps = 13/207 (6%)

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
            P V++Y ++I+ LC+D  VDK  +L  +M  RG  P+ V Y++L++     GR  +A  
Sbjct: 33  RPTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRAKEAFS 92

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCIL---- 388
           L   + + GC P+  ++  +I    K  ++E A  +  EM+  G  PD   ++ +L    
Sbjct: 93  LLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALC 152

Query: 389 ------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
                 EA   F+ +    F  D   +N +VDGL K+ RL +A  + + L      P V 
Sbjct: 153 ELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVF 212

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEE 469
           T+T+ + GL   G +  AY+    M +
Sbjct: 213 TFTIAVDGLSKAGNLTGAYEFFDSMPQ 239



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 96/206 (46%), Gaps = 17/206 (8%)

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
           +++Y  +IN LCK   V  A   F      G  P VV YS++IDG C    +D   KL  
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLE 60

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------NSC 386
            +   GC P+  +YNTL+N+     + +EA SL   M + G  P+               
Sbjct: 61  EMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEG 120

Query: 387 ILEAAELFRTLH---NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
            +EAA  FR +    +  F  D+ +   L+  LC+  R+  AW  F+++   G  P+ VT
Sbjct: 121 EIEAA--FRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVT 178

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEE 469
           Y  M+ GL   G +E A  +L  + E
Sbjct: 179 YNTMVDGLYKAGRLEAAGMVLQLLAE 204


>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
 gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
          Length = 614

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/383 (28%), Positives = 181/383 (47%), Gaps = 56/383 (14%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ P+    N+LM    +   ++ A      +LR+   P VVT   L+ G+C       A
Sbjct: 239 GVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMSGMCKASDLNSA 298

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
           + L         +  V P+V  Y + + GLCK G +     +F +M+ RG+ P+  V+ +
Sbjct: 299 NALR----GLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTT 354

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI  +C        +GN +A LELH E              D+++Y ++ N LC+   + 
Sbjct: 355 LIDAHC-------KEGNVAAGLELHREMATRG------IKTDLVAYNALANGLCRVRDLK 401

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A ++  +M++ G+ PD V Y++LIDG+C  G +D A ++   +  EG   D  +Y TLI
Sbjct: 402 AANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLI 461

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           +  SK  +  ++  +  EM+  G+ PDN                      T +  ++D  
Sbjct: 462 SGLSKSGRSVDSERILCEMMEAGLEPDN----------------------TTYTMVIDAF 499

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLK 476
           CK+  +++ ++L K++   G +P VVTY V++ G CI G ++ A     DM         
Sbjct: 500 CKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGFCILGQMKNA-----DM--------- 545

Query: 477 AIELLHKMAKRYVKPDEITVSIL 499
              LL+ M    V PD+IT +IL
Sbjct: 546 ---LLNAMLNIGVCPDDITYNIL 565



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 154/359 (42%), Gaps = 61/359 (16%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           +A  F+  ++     P    FN L+  +       +   + + +   G+ P  V+ N LM
Sbjct: 227 EAYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLM 286

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           +  CK   ++ A    G + +   +PDV T G  ++GLC  G+  +A  +F +       
Sbjct: 287 SGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMR----E 342

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
             V PN + + ++ID  CK+G V     L  +M  RGI  D   YN+L    C   + + 
Sbjct: 343 RGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKA 402

Query: 250 A----------------------------KGNTSAALELHEE---------------FVN 266
           A                            +G    A+E+ +E                ++
Sbjct: 403 ANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLIS 462

Query: 267 GNGELG-------VICH-------PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
           G  + G       ++C        PD  +Y  +I++ CK+  V    +L  +M+++G  P
Sbjct: 463 GLSKSGRSVDSERILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKP 522

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
            VV Y+ +++G+C++G++ +A  L  ++ + G  PD  +YN L++ + K  KV +A  L
Sbjct: 523 GVVTYNVVMNGFCILGQMKNADMLLNAMLNIGVCPDDITYNILLDGHCKHGKVRDAEEL 581



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 95/223 (42%), Gaps = 40/223 (17%)

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           V +A   +L +   G+ P+   ++ L+      G++  AR +F  +   G  P   ++NT
Sbjct: 225 VPEAYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNT 284

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           L++   K   +  A +L G M   GV P                      D+  +   + 
Sbjct: 285 LMSGMCKASDLNSANALRGLMAKAGVAP----------------------DVYTYGAFMQ 322

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE----- 469
           GLCK+ R++ A E+F+++   G  PN V +T +I   C EG +    +L  +M       
Sbjct: 323 GLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKT 382

Query: 470 -------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                        ++R+   A +++ +M    +KPD++T + L
Sbjct: 383 DLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTTL 425



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 87/216 (40%), Gaps = 42/216 (19%)

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           RG+   +  +S L++    +  + +A   ++ +   G  P+   +N L+    +  K+  
Sbjct: 206 RGVRVPLPAWSDLMN---RLPSVPEAYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLAS 262

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           A +++ EM+  GV P                       +  FN L+ G+CK+  L SA  
Sbjct: 263 ARNMFDEMLRRGVPPT----------------------VVTFNTLMSGMCKASDLNSANA 300

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKR 487
           L   + + G  P+V TY   + GLC  G I+ A                 +E+  +M +R
Sbjct: 301 LRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDA-----------------VEMFEEMRER 343

Query: 488 YVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
            V P+ +  + L +   K+ N    + L     +R 
Sbjct: 344 GVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRG 379


>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
          Length = 825

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 122/431 (28%), Positives = 199/431 (46%), Gaps = 42/431 (9%)

Query: 59  ENSKSGEVELNDALCFFNYMIHMQPTPF-MPSFNSLLGALAGK----------KYYVNFI 107
           E  +SG +  +DA   F+ ++  +  P      N LL ALA               V   
Sbjct: 115 ERLRSGTLGPDDARHLFDELLLRRDAPAPARGLNELLSALARAPPSAACRDVPALAVELF 174

Query: 108 CLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGL 167
              +R       P   + NIL+NC+ +           GR+LR    PDV +   LI G 
Sbjct: 175 KRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGF 234

Query: 168 CMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI 227
             +G+  +A  LF K         ++PNV+ Y+S+I+GLCK   ++K   +   M G G+
Sbjct: 235 SKEGEVDKAHDLFYKME----EQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGV 290

Query: 228 YPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIIN 287
            P+   YN LI  Y  +  W++       ++ + +E  +       +  PDV +  S + 
Sbjct: 291 RPNNMTYNCLIHGYSTSGMWKE-------SVRVFKEMSSS------LLVPDVGNCNSFMT 337

Query: 288 SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
           +LCK   + +A+++F  M  +G  PDV+ Y +L+ GY   G I     LF  +  EG +P
Sbjct: 338 ALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVP 397

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---------NSCIL----EAAELF 394
           D   +NTLIN+Y+++  ++++L ++ +M   GV PD           C L    +A E F
Sbjct: 398 DRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKF 457

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG-PEPNVVTYTVMICGLCI 453
             + +T    D  V++CL+ G C    L  A EL   +   G P P +  +T +I  LC 
Sbjct: 458 NHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCK 517

Query: 454 EGGIEKAYDLL 464
           EG + +  D++
Sbjct: 518 EGRVAEGKDVV 528



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 130/545 (23%), Positives = 228/545 (41%), Gaps = 103/545 (18%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E++ A      M+     P   ++N L+   +    +   + + + +++  L+PD  + N
Sbjct: 274 EMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCN 333

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
             M   CK   + +A      ++ K   PDV++ G L+ G    G       LF   V  
Sbjct: 334 SFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVC- 392

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC---- 242
                V+P+   + ++I+   + G ++K  ++F DM  +G+ PD   ++++I  +C    
Sbjct: 393 ---EGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGR 449

Query: 243 ------------------------CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD 278
                                   C +  +  + +   A EL  + ++       I  P 
Sbjct: 450 LDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKG-----IPPPC 504

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
           +  + SIIN+LCK+  V + K++   +   G  P+++ ++SL+DGYCL+G + +A  L  
Sbjct: 505 IKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLD 564

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS--------------------- 377
           S+ES G  PD  +YNTL++ Y K  ++++AL+L+ +M+                      
Sbjct: 565 SMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQAR 624

Query: 378 ---------------------------MGVRPDNSCILEAAELFRTLHNTKFELDLTVFN 410
                                      +G    N+C  EA  L   L +   + D+  FN
Sbjct: 625 RTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFN 684

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME-- 468
            ++  + K  R + A ELF  +  YG  P ++TY VMI  L  E   E A +L   ME  
Sbjct: 685 IVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKS 744

Query: 469 ----------EKIR------ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHEC 512
                     E IR      E  KA   L K+ K+ + P+  T S+L  L + +    E 
Sbjct: 745 SCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVNGKYREY 804

Query: 513 MNLLP 517
           + LLP
Sbjct: 805 IKLLP 809



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 96/460 (20%), Positives = 176/460 (38%), Gaps = 88/460 (19%)

Query: 74  FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
            FN M+     P    FN+L+ A A        + + E +   G+ PD ++ + +++ FC
Sbjct: 386 LFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFC 445

Query: 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL-------------- 179
           ++  + DA      ++     PD     CLI+G C +    +A  L              
Sbjct: 446 RLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCI 505

Query: 180 --FTKFVAFDCRPNVI----------------PNVICYASIIDGLCKDGFVNKVRVLFLD 221
             FT  +   C+   +                PN+I + S++DG C  G + +   L   
Sbjct: 506 KFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDS 565

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDA----------------------------KGN 253
           M+  G+ PD + YN+L+  YC     +DA                               
Sbjct: 566 MESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARR 625

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
           T  A E+  E +     + V  H    +Y +++  LC++   D+A  L   + S  +  D
Sbjct: 626 TIVAKEMFHEMIESG--MAVSIH----TYATVLGGLCRNNCTDEANMLLEKLFSMNVKFD 679

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           ++ ++ +I     +GR  +A++LF +I + G +P   +Y  +I +  K E  E+A +L+ 
Sbjct: 680 ILTFNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFS 739

Query: 374 EMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
            M      PD+                       + N ++  L     +  A     K+ 
Sbjct: 740 SMEKSSCTPDSR----------------------ILNEIIRMLLNKGEVAKAGNYLSKID 777

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
           + G  P   T +++I    + G   +   LLP+    +RE
Sbjct: 778 KKGILPEATTTSLLIYLFSVNGKYREYIKLLPEKYRFLRE 817



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 118/242 (48%), Gaps = 42/242 (17%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PDV SY ++I+   K+  VDKA +LF  M+ +GI+P+VV YSSLI+G C    +D A ++
Sbjct: 222 PDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERV 281

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-NSCILEAAELFR 395
              +   G  P+  +YN LI+ YS     +E++ ++ EM S  + PD  +C         
Sbjct: 282 LRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNC--------- 332

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
                         N  +  LCK  R++ A ++F  +   GP+P+V++Y  ++ G    G
Sbjct: 333 --------------NSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAG 378

Query: 456 ---GIEKAYDLL------PDME---------EKIRECLKAIELLHKMAKRYVKPDEITVS 497
              G++  ++++      PD            ++    K++ +   M K+ V PD IT S
Sbjct: 379 CIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFS 438

Query: 498 IL 499
            +
Sbjct: 439 TV 440


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 134/501 (26%), Positives = 229/501 (45%), Gaps = 83/501 (16%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E + A   F+ M+     P + +FN L+  L  K        L  ++   G+ P+  + N
Sbjct: 196 EHDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFN 255

Query: 127 ILMNCFCKMIGVSDAFVALGRI------LRKV----FSPDVVTLGCLIRGLCMQGKFTEA 176
           I +   C+  G  D  V   R+      LRK+    F PD +T   +I G C +G   +A
Sbjct: 256 IFVQGLCRE-GALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDA 314

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
           + +    V         P+   Y S+I+G CKDG  ++   +F D  G+G+ P   +YN+
Sbjct: 315 NRVLKDAVF----KGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNT 370

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEF---------------VNGNGELGVI------- 274
           LI+           +G    AL+L  E                +NG  ++G +       
Sbjct: 371 LIK-------GLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLV 423

Query: 275 -------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
                  C PD+ +Y ++I+  CK + +D A E+   M S+G+ PDV+ Y++L++G C  
Sbjct: 424 DDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKA 483

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---- 383
           G+ ++  ++F ++E +GC P+  +YN +++S  K +KV EA+ L GEM S G++PD    
Sbjct: 484 GKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSF 543

Query: 384 -----NSC----ILEAAELFRTLHNTKFELDLT-VFNCLVDGLCKSWRLRSAWELFKKLP 433
                  C    I  A +LFR +         T  +N +V    +   +  A +LF  + 
Sbjct: 544 GTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMK 603

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYD-LLPDMEE----------KIRECL------- 475
             G +P+  TY V+I G C  G I + Y  LL +ME+          ++  CL       
Sbjct: 604 NSGCDPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVH 663

Query: 476 KAIELLHKMAKRYVKPDEITV 496
           +A+ ++H M ++ + P+ +  
Sbjct: 664 EAVGIIHLMLQKGIVPETVNT 684



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 116/453 (25%), Positives = 180/453 (39%), Gaps = 70/453 (15%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           ER++     P   S N +MN   +    + A     R+  +    DV T    I+  C  
Sbjct: 100 ERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQSDVYTYTIRIKSFCKT 159

Query: 171 GKFTEASGLFTKFVAFDCRPNVI-------------------------------PNVICY 199
            +   A  L        C  N +                               P+V+ +
Sbjct: 160 ARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEMLARCLCPDVVAF 219

Query: 200 ASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSA--A 257
             ++  LCK G V +   L   +  RG+ P+ F +N  ++  C     + A  N+    A
Sbjct: 220 NKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVRNSRVVEA 279

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
            E   + VNG  E      PD L+Y SII+  CK  +V  A  +  D   +G  PD   Y
Sbjct: 280 EEYLRKMVNGGFE------PDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTY 333

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
            SLI+G+C  G  D A  +F     +G  P    YNTLI   S+   +  AL L  EM  
Sbjct: 334 CSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAE 393

Query: 378 MGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
            G  P+               C+ +A+ L           D+  +N L+DG CK  +L S
Sbjct: 394 NGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDS 453

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE--------------- 469
           A E+  ++   G  P+V+TY  ++ GLC  G  E+  ++   MEE               
Sbjct: 454 ATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVD 513

Query: 470 ---KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
              K ++  +A++LL +M  + +KPD ++   L
Sbjct: 514 SLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTL 546



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 139/297 (46%), Gaps = 30/297 (10%)

Query: 170 QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYP 229
           +GK  EA   F +   ++C P+V      + +I++ L + G+ N+   +++ M+ RG+  
Sbjct: 89  KGKVQEAVDTFERMDFYNCDPSVHS----HNAIMNILVEFGYHNQAHKVYMRMRDRGVQS 144

Query: 230 DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSL 289
           D + Y   I+ +C             AAL L    +    ELG  C  + ++YC+++  L
Sbjct: 145 DVYTYTIRIKSFC-------KTARPYAALRL----LRNMPELG--CDSNAVAYCTVVAGL 191

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
                 D A+ELF +M +R + PDVV ++ L+   C  G + ++ +L   +   G  P+ 
Sbjct: 192 YDSGEHDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNL 251

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVF 409
            ++N  +    +   ++ A+              NS ++EA E  R + N  FE D   +
Sbjct: 252 FTFNIFVQGLCREGALDRAVR-------------NSRVVEAEEYLRKMVNGGFEPDDLTY 298

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
           N ++DG CK   ++ A  + K     G +P+  TY  +I G C +G  ++A  +  D
Sbjct: 299 NSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKD 355



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/152 (21%), Positives = 58/152 (38%), Gaps = 22/152 (14%)

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
            Y   +  Y   G++ +A   F  ++   C P   S+N ++N   +     +A  +Y  M
Sbjct: 78  AYIEAMKNYGRKGKVQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRM 137

Query: 376 ISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
              GV+ D                      +  +   +   CK+ R  +A  L + +P  
Sbjct: 138 RDRGVQSD----------------------VYTYTIRIKSFCKTARPYAALRLLRNMPEL 175

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           G + N V Y  ++ GL   G  + A +L  +M
Sbjct: 176 GCDSNAVAYCTVVAGLYDSGEHDHARELFDEM 207


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 135/518 (26%), Positives = 226/518 (43%), Gaps = 85/518 (16%)

Query: 72  LCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131
           L  F+ MI  + +P + + N +L  L  K      + +   +   G+ P  V+ N L++ 
Sbjct: 184 LSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDS 243

Query: 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT-------KFV 184
           +CK   V      L  + R+  +P+ VT   LI GL  +G+F +A GL         K  
Sbjct: 244 YCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVS 303

Query: 185 AFDCRPNVI------------------------PNVICYASIIDGLCKDGFVNKVRVLFL 220
           A+   P +                         P V  Y S I GLCK G ++       
Sbjct: 304 AYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLS 363

Query: 221 DMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVL 280
           DM    + PD   YN+LI  YC         GN   A  L +E  +      +   P ++
Sbjct: 364 DMLANNLLPDVVSYNTLIYGYCRL-------GNLMKAFLLFDELRS------IYLFPTIV 410

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
           +Y ++++ LC+   ++ A++L ++M + GI PD+V Y+ L++G C MG +  A++ F  +
Sbjct: 411 TYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEM 470

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---------NSCIL--- 388
             EG   D+ +Y T I    K+     A SL  EM++ G  PD           C L   
Sbjct: 471 LHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNL 530

Query: 389 -EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
            EA+EL + + +     D   +  ++    ++ RLR   E+F ++   G  P+VVTYTV+
Sbjct: 531 EEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVL 590

Query: 448 ICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYV 489
           I G   +G +E+A+    +M+E                  K+R   +A     +M ++ +
Sbjct: 591 IHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGI 650

Query: 490 KPDEITVSILEELLNKDENC-----HECMNLLPSFLSR 522
            P++ + +IL      +ENC      E ++L    L R
Sbjct: 651 FPNKYSYTIL-----INENCNMGNWQEALSLYKQMLDR 683



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 115/439 (26%), Positives = 196/439 (44%), Gaps = 56/439 (12%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L +AL     M+    +P + ++NS +  L       + +     +    LLPD VS N 
Sbjct: 320 LAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNT 379

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+  +C++  +  AF+    +      P +VT   L+ GLC QG+   A  L  + +   
Sbjct: 380 LIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMI--- 436

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               + P+++ Y  +++G CK G ++  +  F +M   G+  D++ Y          +  
Sbjct: 437 -NEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAY-------ATRIVG 488

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           E   G+TS A  L EE       L     PD++ Y  +++ LCK   +++A EL   M S
Sbjct: 489 ELKLGDTSRAFSLQEEM------LAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVS 542

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            G+IPD V Y+S+I  +   GR+   R++F  + S+G  P   +Y  LI+ ++   ++E 
Sbjct: 543 DGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLER 602

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           A   + EM   G+ P+                      +  +N L++GLCK  R+  A+ 
Sbjct: 603 AFIYFSEMQEKGILPN----------------------VITYNSLINGLCKVRRMDQAYN 640

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKR 487
            F ++   G  PN  +YT++I   C  G  ++A                 + L  +M  R
Sbjct: 641 FFAEMVEKGIFPNKYSYTILINENCNMGNWQEA-----------------LSLYKQMLDR 683

Query: 488 YVKPDEITVSILEELLNKD 506
            V+PD  T S L + L KD
Sbjct: 684 GVQPDSCTHSALLKQLGKD 702



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 43/212 (20%)

Query: 323 GYCLMGRIDDAR-KLFVSIESEGCIPDTSSY---NTLINSYSKIEKVEEALSLYGEMISM 378
            Y +M R+ +A     V +   GC+    S    + LI  YSK   VE+ LS++ +MI  
Sbjct: 134 AYWVMERVINANMHRIVDVLIGGCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKS 193

Query: 379 GVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
            + PD   +     + R L +                      +  A E+++ +  +G +
Sbjct: 194 RLSPD---VKNCNRILRILRDKDL-------------------MSKAVEVYRTMGEFGIK 231

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSI 498
           P +VTY  ++   C  G +++  DLL +M+                 +R   P+++T ++
Sbjct: 232 PTIVTYNTLLDSYCKGGKVQQGLDLLSEMQ-----------------RRGCAPNDVTYNV 274

Query: 499 LEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           L   L+K     +   L+   L    + S  T
Sbjct: 275 LINGLSKKGEFEQAKGLIGEMLKTGLKVSAYT 306


>gi|242067351|ref|XP_002448952.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
 gi|241934795|gb|EES07940.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
          Length = 455

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 121/442 (27%), Positives = 204/442 (46%), Gaps = 48/442 (10%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ P+    NI  + + K   +  A     ++ +   SPD V+ G LI  LC  G+  +A
Sbjct: 25  GISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALIDALCKLGRVDDA 84

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
              F + +       V PN++ ++S++ GLC      KV  LF +M   GI+P+   +N+
Sbjct: 85  EVKFNQMI----NEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLNVGIHPNIVFFNT 140

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           ++   C        +G         +  V+    +GV   PDV+SY ++I+  C    +D
Sbjct: 141 ILCNLC-------KEGRVMEG----QRLVDSIECMGV--RPDVISYNTLIDGHCLAGTID 187

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A +L   M S G+ P+   Y++L+ GYC  GRID A  LF  + S G  P   +YNT++
Sbjct: 188 EASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTIL 247

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFE 403
           +   + ++  EA  LY  MI+ G +               ++C+ EA ++F++L +   +
Sbjct: 248 HGLFQTKRFSEAKELYLNMINSGTKWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSKGLQ 307

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
           L++  F  ++  L K  R   A +LF  +P  G  P+VVTY V+   L  EG +E+   L
Sbjct: 308 LNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRVVAENLIEEGSLEEFDSL 367

Query: 464 LPDMEEK------------IRECL------KAIELLHKMAKRYVKPDEITVSILEELLNK 505
              ME+             +R  L      +A   L K+ +R    +  T S+L  + + 
Sbjct: 368 FSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSMLISIFSS 427

Query: 506 DENCHECMNLLPSFLSRNQEES 527
           DE  H   +L   +   N+  S
Sbjct: 428 DEYQHHAKSLPKKYRILNEANS 449



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 154/332 (46%), Gaps = 19/332 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            ++DA   FN MI+   TP +  F+SL+  L     +     L   +  +G+ P+ V  N
Sbjct: 80  RVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLNVGIHPNIVFFN 139

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            ++   CK   V +    +  I      PDV++   LI G C+ G   EAS L    V+ 
Sbjct: 140 TILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSV 199

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             +PN       Y +++ G CK G ++    LF  M   GI P    YN+++        
Sbjct: 200 GLKPNSFS----YNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKR 255

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
           + +AK       EL+   +N   + G+       +Y +I+N LCK   VD+A ++F  + 
Sbjct: 256 FSEAK-------ELYLNMINSGTKWGI------YTYNTILNGLCKSNCVDEAFKMFQSLC 302

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           S+G+  +++ ++ +I      GR +DA  LF +I + G +PD  +Y  +  +  +   +E
Sbjct: 303 SKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRVVAENLIEEGSLE 362

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLH 398
           E  SL+  M   G  P NS +L A  + R LH
Sbjct: 363 EFDSLFSAMEKNGTAP-NSQMLNAL-VRRLLH 392



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 113/231 (48%), Gaps = 20/231 (8%)

Query: 252 GNTSAALELHE--EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
           GN  A  E+H+    +  NG       P+   +    ++  K  ++DKA ++F  M+  G
Sbjct: 6   GNKGALSEMHDLLNLMVANG-----ISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHG 60

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
           + PD V Y +LID  C +GR+DDA   F  + +EG  P+   +++L+     I+K E+  
Sbjct: 61  LSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVE 120

Query: 370 SLYGEMISMGVRPD---------NSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
            L+ EM+++G+ P+         N C    ++E   L  ++       D+  +N L+DG 
Sbjct: 121 ELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGH 180

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           C +  +  A +L + +   G +PN  +Y  ++ G C  G I+ AY L   M
Sbjct: 181 CLAGTIDEASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKM 231



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 78/162 (48%), Gaps = 13/162 (8%)

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           ++ GY   G + +   L   + + G  P+   +N   ++Y+K   +++A+ ++ +M   G
Sbjct: 1   MLHGYGNKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHG 60

Query: 380 VRPDN---SCILEA---------AEL-FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           + PD      +++A         AE+ F  + N     ++ VF+ LV GLC   +     
Sbjct: 61  LSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVE 120

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           ELF ++   G  PN+V +  ++C LC EG + +   L+  +E
Sbjct: 121 ELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIE 162


>gi|357500143|ref|XP_003620360.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495375|gb|AES76578.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 426

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 115/381 (30%), Positives = 187/381 (49%), Gaps = 43/381 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+  D ++L+IL+N F  +  ++ AF  L +IL+  + PD VTL  L++GLC+  +  +A
Sbjct: 5   GIQRDIINLSILINSFYHLCQLNYAFSVLAKILKIGYQPDTVTLTTLLKGLCINNEVKKA 64

Query: 177 SGLFTKFVAFDCRPNVI-----------------PNVICYASIIDGLCKDGFVNKVRVLF 219
                  +A   R + +                 P+   Y+ II+ LCKD  V     L+
Sbjct: 65  LHFHDDVIAKGFRLDNVSYGTLINGLCKSGETKAPDQFMYSMIINRLCKDKLVVDAYDLY 124

Query: 220 LDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDV 279
            +M  + I+PD   YN+LI  +C     ED       A+ L  E    N        P+V
Sbjct: 125 CEMVVKRIFPDVVTYNTLIYGFCIVGQLED-------AIRLFNEMRLKN------IVPNV 171

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
            S+  +I+ LCK+  V   K +   M  + + PDVV  SSLIDGY L+ + + AR +F +
Sbjct: 172 CSFNILIDGLCKEGDVKGGKSVLAVMIKQSVKPDVVTCSSLIDGYFLVKKANKARYIFNA 231

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---SCILEAA----- 391
           +   G   D  SYN +IN  SK + V+EA+ L+ EM    + PD    S +++       
Sbjct: 232 MAQNGVTIDLRSYNIMINGLSKAKMVDEAVILFKEMQFKSMTPDTITYSTLIDGLGKLGR 291

Query: 392 -----ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTV 446
                +L   +  T    ++  ++ L++ LCKS    +A  +F K+   G EPN+VTY +
Sbjct: 292 ISYVWDLIDEMRATGRSANVITYSSLLNVLCKSGHFDTAIRIFTKIKDKGFEPNMVTYNI 351

Query: 447 MICGLCIEGGIEKAYDLLPDM 467
           ++ GLC  G ++ A ++  D+
Sbjct: 352 LVDGLCKNGRLKDAQEIFHDL 372



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 154/354 (43%), Gaps = 57/354 (16%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD    ++++N  CK   V DA+     ++ K   PDVVT   LI G C+ G+  +A  L
Sbjct: 99  PDQFMYSMIINRLCKDKLVVDAYDLYCEMVVKRIFPDVVTYNTLIYGFCIVGQLEDAIRL 158

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F +        N++PNV  +  +IDGLCK+G V   + +   M  + + PD    +SLI 
Sbjct: 159 FNEMRL----KNIVPNVCSFNILIDGLCKEGDVKGGKSVLAVMIKQSVKPDVVTCSSLID 214

Query: 240 VYCCAVNWEDAK--------GNTSAALELHEEFVNGNGELGVI--------------CHP 277
            Y        A+           +  L  +   +NG  +  ++                P
Sbjct: 215 GYFLVKKANKARYIFNAMAQNGVTIDLRSYNIMINGLSKAKMVDEAVILFKEMQFKSMTP 274

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           D ++Y ++I+ L K   +    +L  +M++ G   +V+ YSSL++  C  G  D A ++F
Sbjct: 275 DTITYSTLIDGLGKLGRISYVWDLIDEMRATGRSANVITYSSLLNVLCKSGHFDTAIRIF 334

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397
             I+ +G  P+  +YN L++   K                      N  + +A E+F  L
Sbjct: 335 TKIKDKGFEPNMVTYNILVDGLCK----------------------NGRLKDAQEIFHDL 372

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
               + LD+ ++  +++GLC+      A         YG  PN VTY ++I  L
Sbjct: 373 LIKGYRLDVRLYTVMINGLCREALFDEA---------YGCTPNAVTYEIIIRAL 417



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 140/299 (46%), Gaps = 17/299 (5%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DA   +  M+  +  P + ++N+L+          + I L   +    ++P+  S NIL+
Sbjct: 119 DAYDLYCEMVVKRIFPDVVTYNTLIYGFCIVGQLEDAIRLFNEMRLKNIVPNVCSFNILI 178

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           +  CK   V      L  ++++   PDVVT   LI G  +  K  +A  +F        +
Sbjct: 179 DGLCKEGDVKGGKSVLAVMIKQSVKPDVVTCSSLIDGYFLVKKANKARYIFNAM----AQ 234

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
             V  ++  Y  +I+GL K   V++  +LF +M+ + + PD   Y++LI       +   
Sbjct: 235 NGVTIDLRSYNIMINGLSKAKMVDEAVILFKEMQFKSMTPDTITYSTLI-------DGLG 287

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
             G  S   +L +E +   G        +V++Y S++N LCK    D A  +F  +K +G
Sbjct: 288 KLGRISYVWDLIDE-MRATGR-----SANVITYSSLLNVLCKSGHFDTAIRIFTKIKDKG 341

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
             P++V Y+ L+DG C  GR+ DA+++F  +  +G   D   Y  +IN   +    +EA
Sbjct: 342 FEPNMVTYNILVDGLCKNGRLKDAQEIFHDLLIKGYRLDVRLYTVMINGLCREALFDEA 400



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 20/198 (10%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           N A   FN M     T  + S+N ++  L+  K     + L + +    + PD ++ + L
Sbjct: 223 NKARYIFNAMAQNGVTIDLRSYNIMINGLSKAKMVDEAVILFKEMQFKSMTPDTITYSTL 282

Query: 129 MNCFCKMIGVS------DAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           ++   K+  +S      D   A GR      S +V+T   L+  LC  G F  A  +FTK
Sbjct: 283 IDGLGKLGRISYVWDLIDEMRATGR------SANVITYSSLLNVLCKSGHFDTAIRIFTK 336

Query: 183 F--VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
                F+      PN++ Y  ++DGLCK+G +   + +F D+  +G   D  +Y  +I  
Sbjct: 337 IKDKGFE------PNMVTYNILVDGLCKNGRLKDAQEIFHDLLIKGYRLDVRLYTVMING 390

Query: 241 YCCAVNWEDAKGNTSAAL 258
            C    +++A G T  A+
Sbjct: 391 LCREALFDEAYGCTPNAV 408



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 1/166 (0%)

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M+ RGI  D++  S LI+ +  + +++ A  +   I   G  PDT +  TL+       +
Sbjct: 1   MELRGIQRDIINLSILINSFYHLCQLNYAFSVLAKILKIGYQPDTVTLTTLLKGLCINNE 60

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
           V++AL  + ++I+ G R DN               TK   D  +++ +++ LCK   +  
Sbjct: 61  VKKALHFHDDVIAKGFRLDNVSYGTLINGLCKSGETKAP-DQFMYSMIINRLCKDKLVVD 119

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           A++L+ ++      P+VVTY  +I G CI G +E A  L  +M  K
Sbjct: 120 AYDLYCEMVVKRIFPDVVTYNTLIYGFCIVGQLEDAIRLFNEMRLK 165



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 13/121 (10%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           +++SLL  L    ++   I +  ++   G  P+ V+ NIL++  CK   + DA      +
Sbjct: 313 TYSSLLNVLCKSGHFDTAIRIFTKIKDKGFEPNMVTYNILVDGLCKNGRLKDAQEIFHDL 372

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
           L K +  DV     +I GLC +  F EA G         C PN +     Y  II  L K
Sbjct: 373 LIKGYRLDVRLYTVMINGLCREALFDEAYG---------CTPNAVT----YEIIIRALFK 419

Query: 209 D 209
           +
Sbjct: 420 N 420


>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/412 (30%), Positives = 191/412 (46%), Gaps = 31/412 (7%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           + AL F ++MIH    P   +FN+L+  L    Y+     +   L +  +L D  S  I+
Sbjct: 106 DQALTFLHHMIHEGHVPLSNTFNNLMCLLIRSNYFDKAWWIFNELKSKVVL-DAYSFGIM 164

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           +   C+       F  L  +     SP+VV    LI G C  G    A  LF K      
Sbjct: 165 IKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKYGNVMLAKNLFCKMD---- 220

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
           R  ++PN   Y+ +++G  K G   +   ++ +MK  GI P+A+ YN LI  YC      
Sbjct: 221 RLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNG---- 276

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
              G    A ++  E      E G+ C   V++Y  +I  LC+     +A +L   +   
Sbjct: 277 ---GMVDKAFKVFAEM----REKGIAC--GVMTYNILIGGLCRGKKFGEAVKLVHKVNKV 327

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G+ P++V Y+ LI+G+C +G++D A +LF  ++S G  P   +YNTLI  YSK+E +  A
Sbjct: 328 GLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGA 387

Query: 369 LSLYGEMISMGVRPD--NSCIL-----------EAAELFRTLHNTKFELDLTVFNCLVDG 415
           L L  EM    + P      IL           +A E+   +  +    D+  ++ L+ G
Sbjct: 388 LDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHG 447

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           LC    ++ A +LFK L     +PN V Y  MI G C EG   +A  LL +M
Sbjct: 448 LCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEM 499



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 149/339 (43%), Gaps = 39/339 (11%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           + E +   G++P+  + N L++ +C    V  AF     +  K  +  V+T   LI GLC
Sbjct: 250 MYENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLC 309

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
              KF EA     K V    +  + PN++ Y  +I+G C  G ++    LF  +K  G+ 
Sbjct: 310 RGKKFGEA----VKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLS 365

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           P    YN+LI  Y      E+  G      E+ E  +           P  ++Y  +I++
Sbjct: 366 PTLVTYNTLIAGYS---KVENLAGALDLVKEMEERCIA----------PSKVTYTILIDA 412

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
             +    +KA E+   M+  G++PDV  YS LI G C+ G + +A KLF S+      P+
Sbjct: 413 FARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPN 472

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTV 408
           +  YNT+I+ Y K      AL L  EM+  G+ P                      ++  
Sbjct: 473 SVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVP----------------------NVAS 510

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
           F   +  LC+  + + A  L  ++   G +P+V  Y ++
Sbjct: 511 FCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKMV 549



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 97/412 (23%), Positives = 167/412 (40%), Gaps = 58/412 (14%)

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           + ++N +        A   L  ++ +   P   T   L+  L     F +A  +F +   
Sbjct: 93  DTIVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLMCLLIRSNYFDKAWWIFNEL-- 150

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
              +  V+ +   +  +I G C+ G+  K   L   ++  G+ P+  +Y +LI   CC  
Sbjct: 151 ---KSKVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDG-CCKY 206

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
                 GN   A  L  +       LG++ +P   +Y  ++N   K  L  +  +++ +M
Sbjct: 207 ------GNVMLAKNLFCKM----DRLGLVPNPH--TYSVLMNGFFKQGLQREGFQMYENM 254

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
           K  GI+P+   Y+ LI  YC  G +D A K+F  +  +G      +YN LI    + +K 
Sbjct: 255 KRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKF 314

Query: 366 EEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
            EA+ L  ++  +G+ P+                      +  +N L++G C   ++ +A
Sbjct: 315 GEAVKLVHKVNKVGLSPN----------------------IVTYNILINGFCDVGKMDTA 352

Query: 426 WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE---------------- 469
             LF +L   G  P +VTY  +I G      +  A DL+ +MEE                
Sbjct: 353 VRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDA 412

Query: 470 --KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519
             ++    KA E+   M K  + PD  T S+L   L    N  E   L  S 
Sbjct: 413 FARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSL 464



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 84/185 (45%), Gaps = 4/185 (2%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +++ A+  FN +     +P + ++N+L+   +  +     + L + +    + P  V+  
Sbjct: 348 KMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYT 407

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           IL++ F ++     A      + +    PDV T   LI GLC+ G   EAS LF      
Sbjct: 408 ILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEM 467

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             +    PN + Y ++I G CK+G   +   L  +M   G+ P+   + S I + C    
Sbjct: 468 HLQ----PNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTIGLLCRDEK 523

Query: 247 WEDAK 251
           W++A+
Sbjct: 524 WKEAE 528



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 33/198 (16%)

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           I+N L    ++ +A+ L L + S G IP             LM ++  A           
Sbjct: 44  ILNHLLSSGMLPQAQSLILRLIS-GRIPS-----------SLMLQLTQA-------HFTP 84

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS------CIL-------EAA 391
           C+  T  Y+T++N+Y      ++AL+    MI  G  P ++      C+L       +A 
Sbjct: 85  CLTYTPLYDTIVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLMCLLIRSNYFDKAW 144

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
            +F  L  +K  LD   F  ++ G C++      + L   L  +G  PNVV YT +I G 
Sbjct: 145 WIFNEL-KSKVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGC 203

Query: 452 CIEGGIEKAYDLLPDMEE 469
           C  G +  A +L   M+ 
Sbjct: 204 CKYGNVMLAKNLFCKMDR 221


>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Glycine max]
          Length = 693

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 115/428 (26%), Positives = 195/428 (45%), Gaps = 46/428 (10%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ P+ VS  +++  +CK+  V ++   LG ++ + F  D  TL  ++R  C +G  T A
Sbjct: 197 GVQPNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATLSLIVREFCEKGFVTRA 256

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
              F +F     RPN+I N  C   +I+GLCK G V +   +  +M GRG  P+ + + +
Sbjct: 257 LWYFRRFCEMGLRPNLI-NFTC---MIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTA 312

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI   C        KG T  A  L  + V           P+VL+Y ++I+  C+D  ++
Sbjct: 313 LIDGLC-------KKGWTEKAFRLFLKLVRSENH-----KPNVLTYTAMISGYCRDEKMN 360

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A+ L   MK +G+ P+   Y++LIDG+C  G  + A +L   +  EG  P+  +YN ++
Sbjct: 361 RAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIV 420

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFE 403
           +   K  +V+EA  +       G+  D              + I +A  LF  +  +  +
Sbjct: 421 DGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQ 480

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D+  +  L+   C+  R++ +   F++  R+G  P   TYT MICG C EG +      
Sbjct: 481 PDIHSYTTLIAVFCREKRMKESEMFFEEAVRFGLVPTNKTYTSMICGYCREGNLR----- 535

Query: 464 LPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
                        A++  H+M+      D IT   L   L K     E   L  + + + 
Sbjct: 536 ------------LALKFFHRMSDHGCASDSITYGALISGLCKQSKLDEARCLYDAMIEKG 583

Query: 524 QEESKLTR 531
               ++TR
Sbjct: 584 LTPCEVTR 591



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 167/360 (46%), Gaps = 38/360 (10%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
            R   +GL P+ ++   ++   CK   V  AF  L  ++ + + P+V T   LI GLC +
Sbjct: 261 RRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKK 320

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G   +A  LF K V  +   N  PNV+ Y ++I G C+D  +N+  +L   MK +G+ P+
Sbjct: 321 GWTEKAFRLFLKLVRSE---NHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPN 377

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
              Y +LI  +C A N+E A            E +N   E G    P+V +Y +I++ LC
Sbjct: 378 TNTYTTLIDGHCKAGNFERAY-----------ELMNVMNEEGF--SPNVCTYNAIVDGLC 424

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K   V +A ++       G+  D V Y+ LI  +C    I  A  LF  +   G  PD  
Sbjct: 425 KKGRVQEAYKVLKSGFRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIH 484

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFN 410
           SY TLI  + + ++++E+   + E +  G+ P N                        + 
Sbjct: 485 SYTTLIAVFCREKRMKESEMFFEEAVRFGLVPTNK----------------------TYT 522

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            ++ G C+   LR A + F ++  +G   + +TY  +I GLC +  +++A  L   M EK
Sbjct: 523 SMICGYCREGNLRLALKFFHRMSDHGCASDSITYGALISGLCKQSKLDEARCLYDAMIEK 582



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 162/387 (41%), Gaps = 61/387 (15%)

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
           A   I  K F      + C+++     G+  EA  +  +         + P+      ++
Sbjct: 119 AASLISNKNFEKAHEVMQCMVKSFAEIGRVKEAIEMVIEMH----NQGLAPSTKTLNWVV 174

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
             + + G V     LF +M  RG+ P+   Y  ++  YC   N  ++       +E    
Sbjct: 175 KIVTEMGLVEYAENLFDEMCARGVQPNCVSYRVMVVGYCKLGNVLESDRWLGGMIE--RG 232

Query: 264 FVNGNGELGVIC------------------------HPDVLSYCSIINSLCKDVLVDKAK 299
           FV  N  L +I                          P+++++  +I  LCK   V +A 
Sbjct: 233 FVVDNATLSLIVREFCEKGFVTRALWYFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAF 292

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS-IESEGCIPDTSSYNTLINS 358
           E+  +M  RG  P+V  +++LIDG C  G  + A +LF+  + SE   P+  +Y  +I+ 
Sbjct: 293 EMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISG 352

Query: 359 YSKIEKVEEALSLYGEMISMGVRP---------DNSC----ILEAAELFRTLHNTKFELD 405
           Y + EK+  A  L   M   G+ P         D  C       A EL   ++   F  +
Sbjct: 353 YCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPN 412

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
           +  +N +VDGLCK  R++ A+++ K   R G + + VTYT++I   C +  I+       
Sbjct: 413 VCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTILISEHCKQAEIK------- 465

Query: 466 DMEEKIRECLKAIELLHKMAKRYVKPD 492
                     +A+ L +KM K  ++PD
Sbjct: 466 ----------QALVLFNKMVKSGIQPD 482



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 145/363 (39%), Gaps = 46/363 (12%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L  R+   GL P+  +   L++  CK      A+  +  +  + FSP+V T   ++ GLC
Sbjct: 365 LLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLC 424

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
            +G+  EA     K +    R  +  + + Y  +I   CK   + +  VLF  M   GI 
Sbjct: 425 KKGRVQEAY----KVLKSGFRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQ 480

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           PD   Y +LI V+C               ++  E F       G++  P   +Y S+I  
Sbjct: 481 PDIHSYTTLIAVFC-----------REKRMKESEMFFEEAVRFGLV--PTNKTYTSMICG 527

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
            C++  +  A + F  M   G   D + Y +LI G C   ++D+AR L+ ++  +G  P 
Sbjct: 528 YCREGNLRLALKFFHRMSDHGCASDSITYGALISGLCKQSKLDEARCLYDAMIEKGLTPC 587

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTV 408
             +  TL   Y KI                    D+ C          L   + +L +  
Sbjct: 588 EVTRVTLAYEYCKI--------------------DDGC-----SAMVVLERLEKKLWVRT 622

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
            N LV  LC   ++  A   F KL    P  N VT    +   C E      YDL+ D+ 
Sbjct: 623 VNTLVRKLCSERKVGMAALFFHKLLDKDPNVNRVTIAAFMTA-CYESN---KYDLVSDLS 678

Query: 469 EKI 471
            +I
Sbjct: 679 ARI 681



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 5/152 (3%)

Query: 57  LSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           +SE+ K  E++   AL  FN M+     P + S+ +L+     +K         E     
Sbjct: 455 ISEHCKQAEIK--QALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFFEEAVRF 512

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL+P   +   ++  +C+   +  A     R+     + D +T G LI GLC Q K  EA
Sbjct: 513 GLVPTNKTYTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYGALISGLCKQSKLDEA 572

Query: 177 SGLFTKFVAFDCRPNVIPNVIC---YASIIDG 205
             L+   +     P  +  V     Y  I DG
Sbjct: 573 RCLYDAMIEKGLTPCEVTRVTLAYEYCKIDDG 604


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 130/443 (29%), Positives = 209/443 (47%), Gaps = 54/443 (12%)

Query: 91  NSLLGALAGKKYYVNFICLSERLNTI---GLLPDFVSLNILMNCFCKMIGVSDAFVALGR 147
           NSLLG L  K  +V+     E  N I   G+  +  +LNI++N  CK   + D    L  
Sbjct: 154 NSLLGGLV-KMGWVDLAW--EVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLID 210

Query: 148 ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207
           + +K    D+VT   LI   C +G   EA  +            + P +  Y ++I+GLC
Sbjct: 211 MEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSG----KGLKPTLFTYNAVINGLC 266

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
           K G   + + +F +M   G+ PD   YN+L+   C   N+ +AK   S  L         
Sbjct: 267 KKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHR------- 319

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
               GV   PD++S+ S+I    ++  +D+A   F DMK+ G++PD V+Y+ LI+GYC  
Sbjct: 320 ----GV--SPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRN 373

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---- 383
           G + +A ++   +  +GC  D  +YNT++N   K + + +A +L+ EM+  GV PD    
Sbjct: 374 GMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTF 433

Query: 384 ---------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
                       + +A  LF  +     + D+  +N L+DG CK+  +  A EL+ ++  
Sbjct: 434 TTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMIS 493

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-IRECL-----------------K 476
               PN ++Y +++ G C  G + +A+ L  +M  K I+  L                 K
Sbjct: 494 RKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSK 553

Query: 477 AIELLHKMAKRYVKPDEITVSIL 499
           A E L KM    V PD IT + L
Sbjct: 554 ADEFLGKMISEGVGPDSITYNTL 576



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 122/481 (25%), Positives = 215/481 (44%), Gaps = 84/481 (17%)

Query: 104 VNFICLSERLNTI----------GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVF 153
           VN +C   +++ +          G+  D V+ N L+N +C+   + +AF  +  +  K  
Sbjct: 192 VNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGL 251

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF---------------DCRPN------- 191
            P + T   +I GLC +G++  A G+F + ++                 CR N       
Sbjct: 252 KPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKD 311

Query: 192 ---------VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
                    V P++I ++S+I    ++G +++  + F DMK  G+ PD  +Y  LI  YC
Sbjct: 312 IFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYC 371

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
                    G  S ALE+ ++ +    E G  C  DV++Y +I+N LCK  L+  A  LF
Sbjct: 372 -------RNGMMSEALEIRDKML----EQG--CALDVVAYNTILNGLCKKKLLADANALF 418

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
            +M  RG++PD   +++LI G+C  G +  A  LF  +  +   PD  +YN LI+ + K 
Sbjct: 419 DEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKT 478

Query: 363 EKVEEALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFELDLTVF 409
            ++E+A  L+ EMIS  + P++               + EA  L+  +     +  L   
Sbjct: 479 TEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTC 538

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           N ++ G C+S  L  A E   K+   G  P+ +TY  +I G      ++KA+        
Sbjct: 539 NTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAF-------- 590

Query: 470 KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKL 529
                     L++KM  + ++PD +T +++     +     E   +L   + R  +  + 
Sbjct: 591 ---------FLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRS 641

Query: 530 T 530
           T
Sbjct: 642 T 642



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 152/296 (51%), Gaps = 17/296 (5%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N++L  L  KK   +   L + +   G++PDF +   L++  CK   +  A    G +
Sbjct: 397 AYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIM 456

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
            +K   PD+VT   LI G C   +  +A+ L+ + ++      + PN I YA +++G C 
Sbjct: 457 TQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMIS----RKIFPNHISYAILVNGYCN 512

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
            GFV++   L+ +M  +GI P     N++I+ YC            S  L   +EF+   
Sbjct: 513 LGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYC-----------RSGDLSKADEFLGKM 561

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
              GV   PD ++Y ++IN   K   +DKA  L   M+++G+ PDVV Y+ +++G+C  G
Sbjct: 562 ISEGV--GPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQG 619

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           R+ +A  +   +   G  PD S+Y TLIN Y   + ++EA   + EM+  G  PD+
Sbjct: 620 RMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRGFVPDD 675



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 160/333 (48%), Gaps = 26/333 (7%)

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           F+ M+H   +P + SF+SL+G  +   +    +     + T GL+PD V   IL+N +C+
Sbjct: 313 FSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCR 372

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
              +S+A     ++L +  + DVV    ++ GLC +    +A+ LF + V       V+P
Sbjct: 373 NGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMV----ERGVVP 428

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK--G 252
           +   + ++I G CK+G + K   LF  M  + I PD   YN LI  +C     E A    
Sbjct: 429 DFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELW 488

Query: 253 NTSAALEL------HEEFVNGNGELGVICH--------------PDVLSYCSIINSLCKD 292
           N   + ++      +   VNG   LG +                P +++  ++I   C+ 
Sbjct: 489 NEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRS 548

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             + KA E    M S G+ PD + Y++LI+G+     +D A  L   +E++G  PD  +Y
Sbjct: 549 GDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTY 608

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
           N ++N + +  +++EA  +  +MI  G+ PD S
Sbjct: 609 NVILNGFCRQGRMQEAELILRKMIERGIDPDRS 641



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 11/201 (5%)

Query: 66  VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
            E+  A   +N MI  +  P   S+  L+       +      L + +   G+ P  V+ 
Sbjct: 479 TEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTC 538

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           N ++  +C+   +S A   LG+++ +   PD +T   LI G        +A  L  K   
Sbjct: 539 NTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMET 598

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
                 + P+V+ Y  I++G C+ G + +  ++   M  RGI PD   Y +LI  Y    
Sbjct: 599 ----KGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYV--- 651

Query: 246 NWEDAKGNTSAALELHEEFVN 266
               ++ N   A   H+E + 
Sbjct: 652 ----SQDNLKEAFRFHDEMLQ 668



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 18/125 (14%)

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
           E  + F+ L    F + +   N L+ GL K   +  AWE++ ++ R G E NV T  +M+
Sbjct: 133 EGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMV 192

Query: 449 CGLCIEGGIEKAYDLLPDMEEK----------------IRECL--KAIELLHKMAKRYVK 490
             LC +  I+     L DME+K                 RE L  +A E+++ M+ + +K
Sbjct: 193 NALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLK 252

Query: 491 PDEIT 495
           P   T
Sbjct: 253 PTLFT 257



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 2/115 (1%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           +SG++   D   F   MI     P   ++N+L+      +Y      L  ++ T GL PD
Sbjct: 547 RSGDLSKADE--FLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPD 604

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
            V+ N+++N FC+   + +A + L +++ +   PD  T   LI G   Q    EA
Sbjct: 605 VVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEA 659



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 87/218 (39%), Gaps = 31/218 (14%)

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
           D +V+  LI  Y    ++++    F  +  +G +   ++ N+L+    K+  V+ A  +Y
Sbjct: 114 DNLVFDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVY 173

Query: 373 GEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            E+   G+  +             +  I +       +       D+  +N L++  C+ 
Sbjct: 174 NEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCRE 233

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA---------YDLLPDMEEK 470
             L  A+E+   +   G +P + TY  +I GLC +G   +A           L PD    
Sbjct: 234 GLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTY 293

Query: 471 ----IREC-----LKAIELLHKMAKRYVKPDEITVSIL 499
               +  C     L+A ++   M  R V PD I+ S L
Sbjct: 294 NTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSL 331


>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
          Length = 754

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 122/431 (28%), Positives = 199/431 (46%), Gaps = 42/431 (9%)

Query: 59  ENSKSGEVELNDALCFFNYMIHMQPTPF-MPSFNSLLGALAGK----------KYYVNFI 107
           E  +SG +  +DA   F+ ++  +  P      N LL ALA               V   
Sbjct: 44  ERLRSGTLGPDDARHLFDELLLRRDAPAPARGLNELLSALARAPPSAACRDVPALAVELF 103

Query: 108 CLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGL 167
              +R       P   + NIL+NC+ +           GR+LR    PDV +   LI G 
Sbjct: 104 KRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGF 163

Query: 168 CMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI 227
             +G+  +A  LF K         ++PNV+ Y+S+I+GLCK   ++K   +   M G G+
Sbjct: 164 SKEGEVDKAHDLFYKME----EQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGV 219

Query: 228 YPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIIN 287
            P+   YN LI  Y  +  W++       ++ + +E  +       +  PDV +  S + 
Sbjct: 220 RPNNMTYNCLIHGYSTSGMWKE-------SVRVFKEMSSS------LLVPDVGNCNSFMT 266

Query: 288 SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
           +LCK   + +A+++F  M  +G  PDV+ Y +L+ GY   G I     LF  +  EG +P
Sbjct: 267 ALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVP 326

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---------NSCIL----EAAELF 394
           D   +NTLIN+Y+++  ++++L ++ +M   GV PD           C L    +A E F
Sbjct: 327 DRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKF 386

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG-PEPNVVTYTVMICGLCI 453
             + +T    D  V++CL+ G C    L  A EL   +   G P P +  +T +I  LC 
Sbjct: 387 NHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCK 446

Query: 454 EGGIEKAYDLL 464
           EG + +  D++
Sbjct: 447 EGRVAEGKDVV 457



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 130/545 (23%), Positives = 228/545 (41%), Gaps = 103/545 (18%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E++ A      M+     P   ++N L+   +    +   + + + +++  L+PD  + N
Sbjct: 203 EMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCN 262

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
             M   CK   + +A      ++ K   PDV++ G L+ G    G       LF   V  
Sbjct: 263 SFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVC- 321

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC---- 242
                V+P+   + ++I+   + G ++K  ++F DM  +G+ PD   ++++I  +C    
Sbjct: 322 ---EGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGR 378

Query: 243 ------------------------CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD 278
                                   C +  +  + +   A EL  + ++       I  P 
Sbjct: 379 LDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKG-----IPPPC 433

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
           +  + SIIN+LCK+  V + K++   +   G  P+++ ++SL+DGYCL+G + +A  L  
Sbjct: 434 IKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLD 493

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS--------------------- 377
           S+ES G  PD  +YNTL++ Y K  ++++AL+L+ +M+                      
Sbjct: 494 SMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQAR 553

Query: 378 ---------------------------MGVRPDNSCILEAAELFRTLHNTKFELDLTVFN 410
                                      +G    N+C  EA  L   L +   + D+  FN
Sbjct: 554 RTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFN 613

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME-- 468
            ++  + K  R + A ELF  +  YG  P ++TY VMI  L  E   E A +L   ME  
Sbjct: 614 IVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKS 673

Query: 469 ----------EKIR------ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHEC 512
                     E IR      E  KA   L K+ K+ + P+  T S+L  L + +    E 
Sbjct: 674 SCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVNGKYREY 733

Query: 513 MNLLP 517
           + LLP
Sbjct: 734 IKLLP 738



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 96/460 (20%), Positives = 176/460 (38%), Gaps = 88/460 (19%)

Query: 74  FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
            FN M+     P    FN+L+ A A        + + E +   G+ PD ++ + +++ FC
Sbjct: 315 LFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFC 374

Query: 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL-------------- 179
           ++  + DA      ++     PD     CLI+G C +    +A  L              
Sbjct: 375 RLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCI 434

Query: 180 --FTKFVAFDCRPNVI----------------PNVICYASIIDGLCKDGFVNKVRVLFLD 221
             FT  +   C+   +                PN+I + S++DG C  G + +   L   
Sbjct: 435 KFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDS 494

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDA----------------------------KGN 253
           M+  G+ PD + YN+L+  YC     +DA                               
Sbjct: 495 MESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARR 554

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
           T  A E+  E +     + V  H    +Y +++  LC++   D+A  L   + S  +  D
Sbjct: 555 TIVAKEMFHEMIESG--MAVSIH----TYATVLGGLCRNNCTDEANMLLEKLFSMNVKFD 608

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           ++ ++ +I     +GR  +A++LF +I + G +P   +Y  +I +  K E  E+A +L+ 
Sbjct: 609 ILTFNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFS 668

Query: 374 EMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
            M      PD+                       + N ++  L     +  A     K+ 
Sbjct: 669 SMEKSSCTPDSR----------------------ILNEIIRMLLNKGEVAKAGNYLSKID 706

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
           + G  P   T +++I    + G   +   LLP+    +RE
Sbjct: 707 KKGILPEATTTSLLIYLFSVNGKYREYIKLLPEKYRFLRE 746



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 118/242 (48%), Gaps = 42/242 (17%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PDV SY ++I+   K+  VDKA +LF  M+ +GI+P+VV YSSLI+G C    +D A ++
Sbjct: 151 PDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERV 210

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-NSCILEAAELFR 395
              +   G  P+  +YN LI+ YS     +E++ ++ EM S  + PD  +C         
Sbjct: 211 LRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNC--------- 261

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
                         N  +  LCK  R++ A ++F  +   GP+P+V++Y  ++ G    G
Sbjct: 262 --------------NSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAG 307

Query: 456 ---GIEKAYDLL------PDME---------EKIRECLKAIELLHKMAKRYVKPDEITVS 497
              G++  ++++      PD            ++    K++ +   M K+ V PD IT S
Sbjct: 308 CIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFS 367

Query: 498 IL 499
            +
Sbjct: 368 TV 369


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 114/460 (24%), Positives = 213/460 (46%), Gaps = 59/460 (12%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           ++G+ E   A+   + M+     P + ++NS+L  L     +     + + ++  G+ PD
Sbjct: 142 RAGDAEA--AMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPD 199

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG--- 178
             S  IL+  FC++  + +A      +  +   PD+V+  CLI     +GK   A     
Sbjct: 200 VRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLR 259

Query: 179 ------------LFTKFVAFDCRPNV----------------IPNVICYASIIDGLCKDG 210
                       ++T  +   CR  +                +P+V+ Y ++++GLCK+ 
Sbjct: 260 EMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKER 319

Query: 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGE 270
            +     L  +M+ RG+ PD   + +LI  YC        +G    AL+L +  +N    
Sbjct: 320 RLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCI-------EGKLDKALQLFDTMLNQR-- 370

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
                 PD+++Y ++I+ +C+   +DKA +L+ DM SR I P+ V YS LID +C  G++
Sbjct: 371 ----LRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQV 426

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSC 386
           +DA      + ++G +P+  +YN++I  Y +   V +      +M+   V PD    N+ 
Sbjct: 427 EDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTL 486

Query: 387 IL---------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
           I          +A +L   +   K + D+  +N L++G      ++ A  +F+K+   G 
Sbjct: 487 IHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGI 546

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKA 477
           EP+  TY  MI G    G  ++A+ L  +M ++ +E  +A
Sbjct: 547 EPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGKEKRRA 586



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/424 (26%), Positives = 191/424 (45%), Gaps = 48/424 (11%)

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           +LNI+++ +CK +        +  + ++   PDVVT   ++      G    A  L    
Sbjct: 97  TLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSM 156

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
           V+      + P ++ Y S++ GLC+ G  +K   +F +M   G+ PD   +  LI  +C 
Sbjct: 157 VS----KGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCR 212

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                   G    AL++++E  +          PD++S+  +I    +   +D A     
Sbjct: 213 V-------GEIEEALKIYKEMRHRG------IKPDLVSFSCLIGLFARRGKMDHAMAYLR 259

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
           +M+  G++PD V+Y+ +I G+C  G + DA ++   +   GC+PD  +YNTL+N   K  
Sbjct: 260 EMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKER 319

Query: 364 KVEEALSLYGEMISMGVRPD---------NSCIL----EAAELFRTLHNTKFELDLTVFN 410
           ++ +A  L  EM   GV PD           CI     +A +LF T+ N +   D+  +N
Sbjct: 320 RLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYN 379

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            L+DG+C+   L  A +L+  +      PN VTY+++I   C +G +E A+  L +M  K
Sbjct: 380 TLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINK 439

Query: 471 ------------------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHEC 512
                                  K  + L KM    V PD IT + L     K++  H+ 
Sbjct: 440 GILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDA 499

Query: 513 MNLL 516
             LL
Sbjct: 500 FKLL 503



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 110/462 (23%), Positives = 206/462 (44%), Gaps = 84/462 (18%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           + PD V+ N++++   +      A   +  ++ K   P +VT   +++GLC  G + +A 
Sbjct: 126 VFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAW 185

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            +F +   F     V P+V  +  +I G C+ G + +   ++ +M+ RGI PD   ++ L
Sbjct: 186 EVFKEMDDF----GVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCL 241

Query: 238 IRVYCCAVNWEDA----------------------------KGNTSAALELHEEFVNGNG 269
           I ++      + A                             G  S AL + +E V    
Sbjct: 242 IGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMV---- 297

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
             G  C PDV++Y +++N LCK+  +  A+ L  +M+ RG+ PD+  +++LI GYC+ G+
Sbjct: 298 --GCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGK 355

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE 389
           +D A +LF ++ ++   PD  +YNTLI+   +   +++A  L+ +M S  + P++     
Sbjct: 356 LDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNH----- 410

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
                              ++ L+D  C+  ++  A+    ++   G  PN++TY  +I 
Sbjct: 411 -----------------VTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIK 453

Query: 450 GLCIEGGIEKAYDLL---------PDM------------EEKIRECLKAIELLHKMAKRY 488
           G C  G + K    L         PD+            E+K+ +  K   LL+ M K  
Sbjct: 454 GYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFK---LLNMMEKEK 510

Query: 489 VKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           V+PD +T ++L    +   N  E   +     ++  E  + T
Sbjct: 511 VQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYT 552


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 128/470 (27%), Positives = 207/470 (44%), Gaps = 50/470 (10%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + S+N+++  L  +K     + L   +      P+  +  ILM+  CK   V +A   
Sbjct: 8   PDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRL 67

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           LG + RK    DVV    LI G C +G       LF + +       + PNV+ Y+ +I+
Sbjct: 68  LGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEML----EKGISPNVVVYSCLIN 123

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           G CK G   +   +   M  RGI PD + Y  +I   C         G    AL+L +  
Sbjct: 124 GFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLC-------KDGRARKALDLFD-L 175

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           +   GE      P  ++Y  +IN LCK+  +  A ++F  M  +G   +VV Y++LI G 
Sbjct: 176 MTEKGE-----EPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGL 230

Query: 325 CLMGRIDDARKLFVSIESEG--CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
           C  G++D+A KLF S+  +G    PD  ++NT+I    K  ++++A+ +Y  MI  G   
Sbjct: 231 CNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFG 290

Query: 383 D-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
           +             +  I +A EL++ +H        T ++ ++DG CK   L  A  LF
Sbjct: 291 NLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLF 350

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KI 471
            ++   G  P +  Y  ++  LC E  +E+A  L  +M+E                  K 
Sbjct: 351 SRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKA 410

Query: 472 RECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
            +   A ELL+ M +  + PD  T S     L+K     E      S ++
Sbjct: 411 GDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIA 460



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 166/344 (48%), Gaps = 46/344 (13%)

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
           R N++P+++ Y +II+GLCK+  + K   L ++M+G    P++F Y  L+   C      
Sbjct: 3   RINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLC------ 56

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
             +G    A+ L  E      E+      DV+ Y ++I+  C    +D+ K LF +M  +
Sbjct: 57  -KEGRVEEAMRLLGEMKRKGLEV------DVVVYSTLISGFCSKGCLDRGKALFDEMLEK 109

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           GI P+VVVYS LI+G+C  G   +A  +  ++   G  PD  +Y  +I    K  +  +A
Sbjct: 110 GISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKA 169

Query: 369 LSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFELDLTVFNCLVDG 415
           L L+  M   G  P                CI +A ++F T+      L++  +N L+ G
Sbjct: 170 LDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMG 229

Query: 416 LCKSWRLRSAWELFKKLPRYGP--EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK--- 470
           LC + +L  A +LF  L   G   EP+V+T+  +I GLC EG ++KA ++   M E+   
Sbjct: 230 LCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSF 289

Query: 471 ---------IRECL------KAIELLHKMAKRYVKPDEITVSIL 499
                    I E +      KA+EL  ++ K  + P   T S++
Sbjct: 290 GNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVM 333



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 128/482 (26%), Positives = 203/482 (42%), Gaps = 71/482 (14%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+     F+ M+    +P +  ++ L+     K  +     +   +   G+ PD  +   
Sbjct: 96  LDRGKALFDEMLEKGISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTC 155

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++   CK      A      +  K   P  VT   LI GLC +G   +A  +F   +   
Sbjct: 156 MIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKG 215

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY--PDAFVYNSLIRVYCCAV 245
            R  V+     Y ++I GLC +G +++   LF  +   G Y  PD   +N++I+  C   
Sbjct: 216 KRLEVVS----YNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLC--- 268

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELG--VICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                +G    A+E+++  +   G  G    CH        +I    K  ++DKA EL+ 
Sbjct: 269 ----KEGRLDKAVEIYDTMIE-RGSFGNLFTCHI-------LIGEYIKSGIIDKAMELWK 316

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            +   G++P    YS +IDG+C M  ++ A+ LF  ++  G  P    YNTL+ S  K  
Sbjct: 317 RVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKES 376

Query: 364 KVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLR 423
            +E+A  L+ EM      PD                         FN ++DG  K+  + 
Sbjct: 377 SLEQARRLFQEMKESNCEPDT----------------------ISFNIMIDGTLKAGDIH 414

Query: 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK---AYD------LLPD-------- 466
           SA EL   + + G  P+  TY+  I  L   G +E+   A+D      + PD        
Sbjct: 415 SAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLI 474

Query: 467 ----MEEKIRECLKAIELLHKMAKRYVKPD-EITVSILEELLNKDENCHECMNLLPSFLS 521
               + ++I E    I LL +MA   V  D EIT SIL  L N  E+ H  M LLP+F S
Sbjct: 475 KGFGLNDEIEE---VINLLRQMADMGVILDLEITNSILTFLCNSAEHLH-VMELLPNFSS 530

Query: 522 RN 523
            +
Sbjct: 531 ES 532



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 147/322 (45%), Gaps = 55/322 (17%)

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
           MK   I PD   YN++I   C     E A       +E+           G  C P+  +
Sbjct: 1   MKRINILPDIVSYNTIINGLCKEKRLEKA---VDLLVEME----------GSSCEPNSFT 47

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           YC +++ LCK+  V++A  L  +MK +G+  DVVVYS+LI G+C  G +D  + LF  + 
Sbjct: 48  YCILMDGLCKEGRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEML 107

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK 401
            +G  P+   Y+ LIN + K     EA ++   M   G++P                   
Sbjct: 108 EKGISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQP------------------- 148

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
              D+  + C++ GLCK  R R A +LF  +   G EP+ VTY V+I GLC EG I  A+
Sbjct: 149 ---DVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAF 205

Query: 462 DLLPDMEEKIR------------------ECLKAIELLHKMAK--RYVKPDEITVSILEE 501
            +   M EK +                  +  +A++L   + +   YV+PD IT + + +
Sbjct: 206 KIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQ 265

Query: 502 LLNKDENCHECMNLLPSFLSRN 523
            L K+    + + +  + + R 
Sbjct: 266 GLCKEGRLDKAVEIYDTMIERG 287



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 104/226 (46%), Gaps = 39/226 (17%)

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           MK   I+PD+V Y+++I+G C   R++ A  L V +E   C P++ +Y  L++   K  +
Sbjct: 1   MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGR 60

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
           VEEA+ L GEM   G+                      E+D+ V++ L+ G C    L  
Sbjct: 61  VEEAMRLLGEMKRKGL----------------------EVDVVVYSTLISGFCSKGCLDR 98

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKM 484
              LF ++   G  PNVV Y+ +I G C +G                RE   A  +LH M
Sbjct: 99  GKALFDEMLEKGISPNVVVYSCLINGFCKKG--------------LWRE---ATAVLHTM 141

Query: 485 AKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
            +R ++PD  T + +   L KD    + ++L      + +E S +T
Sbjct: 142 TERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVT 187



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 115/261 (44%), Gaps = 17/261 (6%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  L+ A+  ++ MI       + + + L+G           + L +R++ +GL+P   +
Sbjct: 270 EGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTT 329

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            +++++ FCKM  ++ A     R+     SP +     L+  LC +    +A  LF +  
Sbjct: 330 YSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMK 389

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
             +C P+ I     +  +IDG  K G ++  + L  DM+  G+ PDA+ Y+S I      
Sbjct: 390 ESNCEPDTIS----FNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKL 445

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
              E+AKG   + +             G+   PD   Y S+I     +  +++   L   
Sbjct: 446 GQMEEAKGAFDSMIAS-----------GIT--PDNHVYDSLIKGFGLNDEIEEVINLLRQ 492

Query: 305 MKSRGIIPDVVVYSSLIDGYC 325
           M   G+I D+ + +S++   C
Sbjct: 493 MADMGVILDLEITNSILTFLC 513


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 141/538 (26%), Positives = 222/538 (41%), Gaps = 100/538 (18%)

Query: 80  HMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVS 139
            M  +P M +F  ++  L  +K       + ER    G  PD+V+ N+ ++  CK   V 
Sbjct: 34  EMPCSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVD 93

Query: 140 DAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICY 199
           DAF  L ++  K   P  VT   L+ GL   G+  EA  +  + V         P +  Y
Sbjct: 94  DAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMV----EKGNSPTLKTY 149

Query: 200 ASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL---------------------- 237
             +IDGL K G V + R +F+DM G G  PDAFVY +L                      
Sbjct: 150 TVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVE 209

Query: 238 -----------------IRVYCCAVNWEDAKGNTS-----------------AAL---EL 260
                            IR  C + N EDA                      AAL   E 
Sbjct: 210 NGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFDELDDSLDLTHFTFNPLVAALCKAER 269

Query: 261 HEE---FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
            EE   FV    E    C P + +Y S+++   K   +D+A     +   RG IPD V Y
Sbjct: 270 TEEAIAFVKKMSERR--CFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTY 327

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           +S+IDG C +GR+++  + F  + + G  PD  +Y  LI+ + K + + +A  +Y +M+ 
Sbjct: 328 TSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQ 387

Query: 378 MG---------VRPDNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
            G         +  D  C    + EA   F  +        +  ++ L+DG C    + +
Sbjct: 388 SGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSA 447

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY---------DLLPDME------- 468
           A ELF+++   G EPN+V+Y ++I GLC  G + KAY          L PD+        
Sbjct: 448 AVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNSFLH 507

Query: 469 ---EKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
              +++      +EL   M  +   P+  + SIL + + +       + +    +SR 
Sbjct: 508 GLCQRLDTVGDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSRG 565



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 169/361 (46%), Gaps = 31/361 (8%)

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           + N L+   CK     +A   + ++  +   P + T   L+ G    G+  EA     + 
Sbjct: 256 TFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEA 315

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
           V        IP+ + Y SIIDGLCK G V +    F +M+ RG  PDA  Y +LI  +  
Sbjct: 316 V----ERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMK 371

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
           A     A         ++ + +     +  +      +Y  I++ LCK   V +A   FL
Sbjct: 372 AKMIPKAH-------RVYRQMLQSGTVVSTV------TYNIILDGLCKAGRVAEAYATFL 418

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            M+ RG +  VV YS+L+DG+C  G +  A +LF  +   GC P+  SYN +I    +  
Sbjct: 419 AMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAG 478

Query: 364 KVEEALSLYGEMISMGVRPD----NS----------CILEAAELFRTLHNTKFELDLTVF 409
           K+ +A   + +++   + PD    NS           + +  ELF ++ +     +L  +
Sbjct: 479 KLAKAYFYFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSY 538

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           + L+DG+C++  L    E+F ++   G  P+VV +  +I  LCI G +++A ++  ++E 
Sbjct: 539 SILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELER 598

Query: 470 K 470
           +
Sbjct: 599 R 599



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 110/482 (22%), Positives = 194/482 (40%), Gaps = 82/482 (17%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIGLLPDFVSL 125
           L++A+     M+    +P + ++  ++  L  AG+      I +    N  G  PD    
Sbjct: 127 LDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGN--GCRPDAFVY 184

Query: 126 NILMNCFCKMIGVSDAFVALGRILR----KVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             L++   K+  + +A V L +++     +   PDVV    +IR LC  G   +A   F 
Sbjct: 185 TALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFD 244

Query: 182 KF--------------VAFDCRP----------------NVIPNVICYASIIDGLCKDGF 211
           +               VA  C+                    P +  Y S++DG  K G 
Sbjct: 245 ELDDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGR 304

Query: 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGEL 271
           +++  +   +   RG  PDA  Y S+I   C         G      E   E  N   E 
Sbjct: 305 LDEALLQLKEAVERGFIPDAVTYTSIIDGLC-------KLGRVEEGCERFHEMRNRGYE- 356

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
                PD ++Y ++I+   K  ++ KA  ++  M   G +   V Y+ ++DG C  GR+ 
Sbjct: 357 -----PDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVA 411

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------- 383
           +A   F+++E  GC+    +Y+ L++ +     V  A+ L+  M+  G  P+        
Sbjct: 412 EAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIII 471

Query: 384 -----NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW-RLRSAWELFKKLPRYGP 437
                   + +A   F  L   +   D+  FN  + GLC+    +    ELF+ +   G 
Sbjct: 472 RGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGT 531

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVS 497
            PN+ +Y++++ G+C  GG+E                   +E+ H+M  R V PD +  +
Sbjct: 532 SPNLHSYSILMDGICRAGGLEVT-----------------LEIFHEMVSRGVAPDVVVFN 574

Query: 498 IL 499
            L
Sbjct: 575 TL 576



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 136/266 (51%), Gaps = 17/266 (6%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G +   V+ NI+++  CK   V++A+     +  +     VVT   L+ G C +G  + A
Sbjct: 389 GTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAA 448

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             LF + +   C PN++     Y  II GLC+ G + K    F  +  R + PD + +NS
Sbjct: 449 VELFRRMLDRGCEPNLVS----YNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNS 504

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
            +   C  +   D  G+    +EL E  V+          P++ SY  +++ +C+   ++
Sbjct: 505 FLHGLCQRL---DTVGD---GVELFESMVSQG------TSPNLHSYSILMDGICRAGGLE 552

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
              E+F +M SRG+ PDVVV+++LI   C+ GR+D+A ++F  +E     PD  SY +L+
Sbjct: 553 VTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRSA-PDAWSYWSLL 611

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRP 382
           ++ S+ E++EEA  L   M   G  P
Sbjct: 612 DALSRCERMEEARLLSFHMKLQGCAP 637



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 152/381 (39%), Gaps = 92/381 (24%)

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
            ++   +C A +++GLCK G +++  +L  +M      PD   +  +I   C        
Sbjct: 5   KLVDTRVCTA-LLNGLCKTGQLDRAMLLLDEMP---CSPDMVAFTVVINGLC-------R 53

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
           +     A  + E  V         C PD ++Y   I+ LCK   VD A +L   M  +  
Sbjct: 54  EKRLDEAFSVLERAVRAG------CEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKC 107

Query: 311 IPDVVVYSSLIDGYCLMGRID-----------------------------------DARK 335
           +P  V Y++L+DG    GR+D                                   +AR+
Sbjct: 108 LPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARR 167

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI----SMGVRPD-------- 383
           +FV +   GC PD   Y  LI+  +KI K++EAL    +M+    + GV PD        
Sbjct: 168 IFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVI 227

Query: 384 -----NSCILEAAELFRTLHNTKFELDLT--VFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
                +  + +A   F  L ++   LDLT   FN LV  LCK+ R   A    KK+    
Sbjct: 228 RQLCASGNLEDALAYFDELDDS---LDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERR 284

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAI 478
             P + TYT ++ G    G +++A   L +  E                  K+    +  
Sbjct: 285 CFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGC 344

Query: 479 ELLHKMAKRYVKPDEITVSIL 499
           E  H+M  R  +PD +T + L
Sbjct: 345 ERFHEMRNRGYEPDAVTYAAL 365



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 127/265 (47%), Gaps = 29/265 (10%)

Query: 89  SFNSLLGAL--AGK--KYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           ++N +L  L  AG+  + Y  F+ + ER    G +   V+ + LM+ FC    VS A   
Sbjct: 396 TYNIILDGLCKAGRVAEAYATFLAMEER----GCVATVVTYSALMDGFCSEGNVSAAVEL 451

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
             R+L +   P++V+   +IRGLC  GK  +A   F K +    +  + P+V  + S + 
Sbjct: 452 FRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLL----QRRLCPDVYTFNSFLH 507

Query: 205 GLCK--DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
           GLC+  D   + V  LF  M  +G  P+   Y+ L+   C A       G     LE+  
Sbjct: 508 GLCQRLDTVGDGVE-LFESMVSQGTSPNLHSYSILMDGICRA-------GGLEVTLEIFH 559

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
           E V+          PDV+ + ++I  LC    VD+A E+F +++ R   PD   Y SL+D
Sbjct: 560 EMVSRG------VAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRSA-PDAWSYWSLLD 612

Query: 323 GYCLMGRIDDARKLFVSIESEGCIP 347
                 R+++AR L   ++ +GC P
Sbjct: 613 ALSRCERMEEARLLSFHMKLQGCAP 637



 Score = 45.8 bits (107), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 21/138 (15%)

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
           +D  V   L++GLCK+ +L  A  L  ++P     P++V +TV+I GLC E  +++A+ +
Sbjct: 7   VDTRVCTALLNGLCKTGQLDRAMLLLDEMP---CSPDMVAFTVVINGLCREKRLDEAFSV 63

Query: 464 L---------PDMEE---------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505
           L         PD            K      A +LL KM ++   P  +T + L + L K
Sbjct: 64  LERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLK 123

Query: 506 DENCHECMNLLPSFLSRN 523
                E M +L   + + 
Sbjct: 124 AGRLDEAMAILEQMVEKG 141


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Glycine max]
          Length = 1113

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 123/431 (28%), Positives = 194/431 (45%), Gaps = 66/431 (15%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           +AL  +  MI     P M ++++L+ AL  ++     + L E + T+GL P+  +  I +
Sbjct: 210 EALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICI 269

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
               +   + DA+  L  +  +   PDVVT   LI  LC  GK  +A  L+TK  A   +
Sbjct: 270 RVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHK 329

Query: 190 PNVI-------------------------------PNVICYASIIDGLCKDGFVNKVRVL 218
           P+++                               P+V+ Y  +++ LCK G V++   +
Sbjct: 330 PDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDM 389

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD 278
              M+ RGI P+   YN+LI         ++A            E  N    LGV   P 
Sbjct: 390 LDVMRVRGIVPNLHTYNTLISGLLNLRRLDEAL-----------ELFNNMESLGV--APT 436

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
             SY   I+   K    +KA + F  MK RGI+P +   ++ +     MGRI +A+ +F 
Sbjct: 437 AYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFN 496

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398
            I + G  PD+ +YN ++  YSK  ++++A  L  EM+S G  P                
Sbjct: 497 DIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEP---------------- 540

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
                 D+ V N L+D L K+ R+  AW++F +L      P VVTY ++I GL  EG + 
Sbjct: 541 ------DIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLL 594

Query: 459 KAYDLLPDMEE 469
           KA DL   M+E
Sbjct: 595 KALDLFGSMKE 605



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 143/319 (44%), Gaps = 29/319 (9%)

Query: 163  LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
            LIR LC Q K  +A  LF KF          P    Y  ++DGL           LF++M
Sbjct: 758  LIRVLCKQKKALDAKKLFDKFTK---SLGTHPTPESYNCLMDGLLGCNITEAALKLFVEM 814

Query: 223  KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
            K  G  P+ F YN L+          DA G +    EL E +   N  L   C P+++++
Sbjct: 815  KNAGCCPNIFTYNLLL----------DAHGKSKRIDELFELY---NEMLCRGCKPNIITH 861

Query: 283  CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
              II++L K   ++KA +L+ ++ S    P    Y  LI G    GR ++A K+F  +  
Sbjct: 862  NIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPD 921

Query: 343  EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILE 389
              C P+ + YN LIN + K   V  A  L+  MI  G+RPD                + +
Sbjct: 922  YQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDD 981

Query: 390  AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
            A   F  L  T  + D   +N +++GL KS RL  A  LF ++   G  P + TY  +I 
Sbjct: 982  AVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALIL 1041

Query: 450  GLCIEGGIEKAYDLLPDME 468
                 G +++A  +  +++
Sbjct: 1042 HFGNAGMVDQAGKMFEELQ 1060



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 118/506 (23%), Positives = 220/506 (43%), Gaps = 88/506 (17%)

Query: 62   KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
            K+G V+  +A   F  +  ++  P + ++N L+  L  +   +  + L   +   G  P+
Sbjct: 554  KAGRVD--EAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPN 611

Query: 122  FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             V+ N L++C CK   V  A     R+     SPDV+T   +I GL  +G+   A   + 
Sbjct: 612  TVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYH 671

Query: 182  KFVAFDCRPNVIPNVICYASIIDGLCKDGFVN---KVRVLFLDMKGRGI----------- 227
            +   F     + P+ +   +++ G+ KDG V    K+ + F+   G              
Sbjct: 672  QMKKF-----LSPDHVTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELMEC 726

Query: 228  ------------YPDAFVYNS----------LIRVYCCAVNWEDAKGNTSAALELHEEFV 265
                        + +  V NS          LIRV C      DAK       +L ++F 
Sbjct: 727  ILIEAEIEEAISFAEGLVCNSICQDDNLILPLIRVLCKQKKALDAK-------KLFDKFT 779

Query: 266  NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
               G      HP   SY  +++ L    + + A +LF++MK+ G  P++  Y+ L+D + 
Sbjct: 780  KSLG-----THPTPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHG 834

Query: 326  LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
               RID+  +L+  +   GC P+  ++N +I++  K   + +AL LY E+IS    P   
Sbjct: 835  KSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYEIISGDFSP-TP 893

Query: 386  CIL--------------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
            C                EA ++F  + + + + +  ++N L++G  K+  +  A +LFK+
Sbjct: 894  CTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKR 953

Query: 432  LPRYGPEPNVVTYTVMICGLCIEGGIEKA------------------YDLLPDMEEKIRE 473
            + + G  P++ +YT+++  L + G ++ A                  Y+L+ +   K R 
Sbjct: 954  MIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRR 1013

Query: 474  CLKAIELLHKMAKRYVKPDEITVSIL 499
              +A+ L  +M  R + P+  T + L
Sbjct: 1014 LEEALSLFSEMKNRGISPELYTYNAL 1039



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 139/304 (45%), Gaps = 30/304 (9%)

Query: 155  PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
            P++ T   L+       +  E   L+ + +   C+PN+I + I    II  L K   +NK
Sbjct: 821  PNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNI----IISALVKSNSINK 876

Query: 215  VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
               L+ ++      P    Y  LI     A       G +  A+++ EE  +        
Sbjct: 877  ALDLYYEIISGDFSPTPCTYGPLIGGLLKA-------GRSEEAMKIFEEMPDYQ------ 923

Query: 275  CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
            C P+   Y  +IN   K   V+ A +LF  M   GI PD+  Y+ L++   + GR+DDA 
Sbjct: 924  CKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAV 983

Query: 335  KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCIL-- 388
              F  ++  G  PDT SYN +IN   K  ++EEALSL+ EM + G+ P+    N+ IL  
Sbjct: 984  HYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHF 1043

Query: 389  -------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
                   +A ++F  L     E ++  +N L+ G  KS     A+ +FKK+   G  PN 
Sbjct: 1044 GNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNA 1103

Query: 442  VTYT 445
             T+ 
Sbjct: 1104 GTFA 1107



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 113/427 (26%), Positives = 183/427 (42%), Gaps = 56/427 (13%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           ++  GL PD V+ N++M C+ K   +  A   L  +L +   PD++ +  LI  L   G+
Sbjct: 498 IHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGR 557

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
             EA  +F +         + P V+ Y  +I GL K+G + K   LF  MK  G  P+  
Sbjct: 558 VDEAWQMFGRLKDL----KLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTV 613

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            +N+L+   C      DA      AL++       N      C PDVL+Y +II  L K+
Sbjct: 614 TFNALLDCLC----KNDA---VDLALKMFCRMTIMN------CSPDVLTYNTIIYGLIKE 660

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS-IESEGCIPDTSS 351
                A   +  MK + + PD V   +L+ G    GR++DA K+ +  +   G       
Sbjct: 661 GRAGYAFWFYHQMK-KFLSPDHVTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQV 719

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLT---- 407
           +  L+       ++EEA+S    ++   +  D++ IL    L R L   K  LD      
Sbjct: 720 WGELMECILIEAEIEEAISFAEGLVCNSICQDDNLILP---LIRVLCKQKKALDAKKLFD 776

Query: 408 -------------VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
                         +NCL+DGL       +A +LF ++   G  PN+ TY          
Sbjct: 777 KFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTY---------- 826

Query: 455 GGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMN 514
                  +LL D   K +   +  EL ++M  R  KP+ IT +I+   L K  + ++ ++
Sbjct: 827 -------NLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALD 879

Query: 515 LLPSFLS 521
           L    +S
Sbjct: 880 LYYEIIS 886



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 158/375 (42%), Gaps = 67/375 (17%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  PD V+  IL+   CK   V  AF  L  +  +   P++ T   LI GL    +  EA
Sbjct: 362 GYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEA 421

Query: 177 SGLFTKFVAFDCRP-------------------------------NVIPNVICYASIIDG 205
             LF    +    P                                ++P++    + +  
Sbjct: 422 LELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYS 481

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
           L + G + + + +F D+   G+ PD+  YN +++ Y  A       G    A +L  E +
Sbjct: 482 LAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKA-------GQIDKATKLLTEML 534

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
           +        C PD++   S+I++L K   VD+A ++F  +K   + P VV Y+ LI G  
Sbjct: 535 SEG------CEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLG 588

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
             G++  A  LF S++  GC P+T ++N L++   K + V+ AL ++  M  M   P   
Sbjct: 589 KEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSP--- 645

Query: 386 CILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
                              D+  +N ++ GL K  R   A+  + ++ ++   P+ VT  
Sbjct: 646 -------------------DVLTYNTIIYGLIKEGRAGYAFWFYHQMKKF-LSPDHVTLY 685

Query: 446 VMICGLCIEGGIEKA 460
            ++ G+  +G +E A
Sbjct: 686 TLLPGVVKDGRVEDA 700



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 127/315 (40%), Gaps = 38/315 (12%)

Query: 71   ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
            AL  F  M +    P + ++N LL A    K       L   +   G  P+ ++ NI+++
Sbjct: 807  ALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIIS 866

Query: 131  CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
               K   ++ A      I+   FSP   T G LI GL   G+  EA  +F +   + C+P
Sbjct: 867  ALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKP 926

Query: 191  NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI-------RV--- 240
            N       Y  +I+G  K G VN    LF  M   GI PD   Y  L+       RV   
Sbjct: 927  NCA----IYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDA 982

Query: 241  ------------------YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
                              Y   +N          AL L  E  N          P++ +Y
Sbjct: 983  VHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRG------ISPELYTY 1036

Query: 283  CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
             ++I       +VD+A ++F +++  G+ P+V  Y++LI G+   G  D A  +F  +  
Sbjct: 1037 NALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMI 1096

Query: 343  EGCIPDTSSYNTLIN 357
             GC P+  ++  L N
Sbjct: 1097 VGCSPNAGTFAQLPN 1111



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 104/249 (41%), Gaps = 30/249 (12%)

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
           +Y +I  +L     + +A      M+  G + +   Y+ LI      G   +A K++  +
Sbjct: 159 TYLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLLQPGFCKEALKVYKRM 218

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCIL-------- 388
            SEG  P   +Y+ L+ +  +       + L  EM ++G+RP+      CI         
Sbjct: 219 ISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRI 278

Query: 389 -EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
            +A  + +T+ +     D+  +  L+D LC + +L  A EL+ K+     +P++VTY  +
Sbjct: 279 DDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITL 338

Query: 448 ICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDE 507
           +      G +E       +ME                A  Y  PD +T +IL E L K  
Sbjct: 339 MSKFGNYGDLETVKRFWSEME----------------ADGYA-PDVVTYTILVEALCKSG 381

Query: 508 NCHECMNLL 516
              +  ++L
Sbjct: 382 KVDQAFDML 390



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 74/179 (41%), Gaps = 10/179 (5%)

Query: 61   SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
             K+G V  N A   F  MI     P + S+  L+  L       + +   E L   GL P
Sbjct: 939  GKAGNV--NIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDP 996

Query: 121  DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
            D VS N+++N   K   + +A      +  +  SP++ T   LI      G   +A  +F
Sbjct: 997  DTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMF 1056

Query: 181  T--KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
               +F+  +      PNV  Y ++I G  K G  ++   +F  M   G  P+A  +  L
Sbjct: 1057 EELQFMGLE------PNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTFAQL 1109


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 184/385 (47%), Gaps = 56/385 (14%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  P     NIL+N FCK   + DA +    I ++   P  V+   LI GLC      E 
Sbjct: 218 GFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDE- 276

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
            G   K    + R  + P+V  Y+ +I GLCK+G ++    LF +M+ RG+ P+   + +
Sbjct: 277 -GFRLKKTMEENR--IYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTA 333

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI   C +   +      SA    H+    G         PD++ Y +++N LCK   V+
Sbjct: 334 LIDGQCRSRRID------SAMNTYHQMLTMG-------VKPDLVMYNTLLNGLCKVGDVN 380

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           KA++L  +M+  G+ PD + Y++LIDGYC  G ++ A ++   +  EG + D  ++  LI
Sbjct: 381 KARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALI 440

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           + + +  +V +A     EM+  G++PD++                       +  ++DG 
Sbjct: 441 SGFCRDGRVRDAERTLREMVEAGMKPDDA----------------------TYTMVIDGY 478

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLK 476
           CK   ++  ++L K++   G +P V+TY V++ GLC +G ++ A     +M         
Sbjct: 479 CKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNA-----NM--------- 524

Query: 477 AIELLHKMAKRYVKPDEITVSILEE 501
              LL  M    V PD+IT +IL E
Sbjct: 525 ---LLEAMLNLGVTPDDITYNILLE 546



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 170/370 (45%), Gaps = 27/370 (7%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  + DA   FN +      P   SFN+L+  L   +       L + +    + PD  +
Sbjct: 236 EGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFT 295

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            ++L++  CK   +  A      + ++   P+ +T   LI G C   +   A   + + +
Sbjct: 296 YSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQML 355

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
                  V P+++ Y ++++GLCK G VNK R L  +M+  G+ PD   Y +LI  YC  
Sbjct: 356 TM----GVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYC-- 409

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                 +G+  +A+E+ +    G  E GV+   D +++ ++I+  C+D  V  A+    +
Sbjct: 410 -----KEGDLESAMEIRK----GMNEEGVVL--DNVAFTALISGFCRDGRVRDAERTLRE 458

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M   G+ PD   Y+ +IDGYC  G +    KL   ++  G  P   +YN L+N   K  +
Sbjct: 459 MVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQ 518

Query: 365 VEEALSLYGEMISMGVRPDN---SCILE-------AAELFRTLHNTKFELDLTVFNCLVD 414
           ++ A  L   M+++GV PD+   + +LE       A +L +  +     +D   +  LV 
Sbjct: 519 MKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGKAEDLLKLRNEKGLIVDYAYYTSLVS 578

Query: 415 GLCKSWRLRS 424
              KS + R 
Sbjct: 579 EYNKSLKDRQ 588



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 98/220 (44%), Gaps = 30/220 (13%)

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G  P V  Y+ LI+ +C  G I DA+ +F  I   G  P T S+NTLIN   K   ++E 
Sbjct: 218 GFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEG 277

Query: 369 LSLYGEMISMGVRPD---NSCILE----------AAELFRTLHNTKFELDLTVFNCLVDG 415
             L   M    + PD    S ++           A +LF  +       +   F  L+DG
Sbjct: 278 FRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDG 337

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL 475
            C+S R+ SA   + ++   G +P++V Y  ++ GLC  G + KA  L+ +M        
Sbjct: 338 QCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEM-------- 389

Query: 476 KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
                  +M    +KPD+IT + L +   K+ +    M +
Sbjct: 390 -------RMVG--MKPDKITYTTLIDGYCKEGDLESAMEI 420



 Score = 43.5 bits (101), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 18/135 (13%)

Query: 383 DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
           D+  + +A + FR + N+ F++       L+D +  S    + W  + ++  YG  P V 
Sbjct: 165 DSGFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQ 224

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKM 484
            Y ++I   C EG I  A  +  ++ +                  K R   +   L   M
Sbjct: 225 YYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTM 284

Query: 485 AKRYVKPDEITVSIL 499
            +  + PD  T S+L
Sbjct: 285 EENRIYPDVFTYSVL 299


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 122/453 (26%), Positives = 205/453 (45%), Gaps = 70/453 (15%)

Query: 52  KLLKYLSENSKSGEVELNDALCFFNYMIHMQPT--PFMPSFNSLLGALAGKKYYVNFICL 109
           +LL   S  + +    L+DA+  F+  I   PT  P  P+ ++L+  L   + Y   + +
Sbjct: 5   RLLNNSSSIAHTQPHSLSDAVSLFHRTIDNDPTSPPSEPACSTLIDNLRKARQYDAVVSV 64

Query: 110 SERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCM 169
             ++ +  +LP F SL+ L   F      S AF  L  + ++ F  +V  L  +++G C 
Sbjct: 65  YHKMVSALVLPRFTSLSALTESFVNTHHPSFAFSVLSLMTKRGFGVNVYNLNLVLKGFCR 124

Query: 170 QGKFTEASGLFTKFVA-FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG---- 224
            G+  +A  LF++    +DC   V+P+ + Y ++++G CK   + + RVLF  MK     
Sbjct: 125 SGQCDKAMSLFSQMKRNYDC---VVPDCVTYNTLVNGFCKAKRLAEARVLFEAMKKGGDC 181

Query: 225 --------------------------------RGIYPDAFVYNSLIRVYCCAVNWEDAKG 252
                                            G+  D FVY+SLI  +C        +G
Sbjct: 182 RPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSLISAFC-------GEG 234

Query: 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
           +     EL +E +           P+V++Y  ++  L +     +A E+  DM +RG+ P
Sbjct: 235 DIETGRELFDEMLRRK------VSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRP 288

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
           DVV Y+ L DG C  GR  DA K+   +  +G  P T +YN ++N   K +++++A  + 
Sbjct: 289 DVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVV 348

Query: 373 GEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDLTVFNC--LVDGLC 417
             M+  G +PD                I EA +L++ L + KF +   VF C  L+ GLC
Sbjct: 349 EMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLC 408

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
           K  R+  A  +   +   G + N+VTY  +I G
Sbjct: 409 KEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEG 441



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 122/485 (25%), Positives = 217/485 (44%), Gaps = 75/485 (15%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L E +   GL  D    + L++ FC    +         +LR+  SP+VVT  CL++GL 
Sbjct: 207 LLEEMEREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLG 266

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVI-------------------------------PNVI 197
             G++ EAS +     A   RP+V+                               P  +
Sbjct: 267 RTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTL 326

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            Y  +++GLCK+  ++    +   M  +G  PDA  YN+L++  C A       G    A
Sbjct: 327 TYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGA-------GKIHEA 379

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
           ++L +  ++    +     PDV +  ++I  LCK+  V  A  +   M   G+  ++V Y
Sbjct: 380 MDLWKLLLSEKFHV----KPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTY 435

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           + LI+GY    ++ +A KL+      G  P++ +Y+ +IN   K++ +  A  L+ +M  
Sbjct: 436 NFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKD 495

Query: 378 MGVRP---DNSCIL----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
            G+RP   D + ++          +A  LF+ + N    +D+  FN ++DG  K+  ++S
Sbjct: 496 SGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKS 555

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM------------EEKIR 472
           A EL  ++      P+ VT++++I      G +++A  L   M            +  ++
Sbjct: 556 AKELLSEMFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFDSLLK 615

Query: 473 ------ECLKAIELLHKMAKRYVKPD-EITVSILEELLNKDENCHECMNLLPSFLSRNQE 525
                 E  K I LLH+MA + V  D ++T +IL  L +   N  +   +LP F  +++ 
Sbjct: 616 GYGLKGETEKIISLLHQMADKDVVLDSKLTSTILACLCHMSRNL-DVEKILPKFSQQSEH 674

Query: 526 ESKLT 530
            SK T
Sbjct: 675 TSKGT 679



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 126/271 (46%), Gaps = 34/271 (12%)

Query: 285 IINSLCKDVLVDKAKELFLDMKSRG--IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
           ++   C+    DKA  LF  MK     ++PD V Y++L++G+C   R+ +AR LF +++ 
Sbjct: 118 VLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKRLAEARVLFEAMKK 177

Query: 343 EG-CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCIL 388
            G C P+  +Y+ LI+ Y K  +V E L L  EM   G++ D                I 
Sbjct: 178 GGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSLISAFCGEGDIE 237

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
              ELF  +   K   ++  ++CL+ GL ++ R R A E+ K +   G  P+VV YTV+ 
Sbjct: 238 TGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLA 297

Query: 449 CGLCIEGGIEKAYDLLPDMEEKIRE-------------CLK-----AIELLHKMAKRYVK 490
            GLC  G    A  +L  M +K  E             C +     A  ++  M K+  K
Sbjct: 298 DGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKK 357

Query: 491 PDEITVSILEELLNKDENCHECMNLLPSFLS 521
           PD +T + L + L      HE M+L    LS
Sbjct: 358 PDAVTYNTLLKGLCGAGKIHEAMDLWKLLLS 388



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 152/346 (43%), Gaps = 25/346 (7%)

Query: 44  VSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKK 101
           V   EE   L   +  N    E  ++DA      M+     P   ++N+LL  L  AGK 
Sbjct: 317 VQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKI 376

Query: 102 YYVN---FICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVV 158
           +       + LSE+ +   + PD  + N L+   CK   V DA      ++      ++V
Sbjct: 377 HEAMDLWKLLLSEKFH---VKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIV 433

Query: 159 TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVL 218
           T   LI G     K  EA     K   +       PN + Y+ +I+GLCK   ++  R L
Sbjct: 434 TYNFLIEGYLAARKLIEA----LKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGL 489

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD 278
           F  MK  GI P    YN+L+   C   + E A+        L +E  N N  +      D
Sbjct: 490 FCKMKDSGIRPTVIDYNALMTSLCREDSLEQAR-------SLFQEMRNVNHNV------D 536

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
           V+S+  II+   K   V  AKEL  +M    ++PD V +S LI+ +  +G +D+A  L+ 
Sbjct: 537 VVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYE 596

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
            + S G +P    +++L+  Y    + E+ +SL  +M    V  D+
Sbjct: 597 KMVSCGHVPGVVVFDSLLKGYGLKGETEKIISLLHQMADKDVVLDS 642



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 80/351 (22%), Positives = 137/351 (39%), Gaps = 66/351 (18%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLL-GALAGKKYYVNFICLSERLNTIGLLPDFV 123
           E  ++DA    + M+ M     + ++N L+ G LA +K  +  + L +     G  P+ +
Sbjct: 410 EGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKL-IEALKLWKYAVESGFSPNSM 468

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           + ++++N  CKM  +S A     ++      P V+    L+  LC +    +A  LF + 
Sbjct: 469 TYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEM 528

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
              +   NV  +V+ +  IIDG  K G V   + L  +M    + PDA  ++ LI     
Sbjct: 529 --RNVNHNV--DVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILI----- 579

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                                                      N   K  ++D+A  L+ 
Sbjct: 580 -------------------------------------------NRFSKLGMLDEAMGLYE 596

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI------N 357
            M S G +P VVV+ SL+ GY L G  +    L   +  +  + D+   +T++      +
Sbjct: 597 KMVSCGHVPGVVVFDSLLKGYGLKGETEKIISLLHQMADKDVVLDSKLTSTILACLCHMS 656

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTV 408
               +EK+    S   E  S G        ++  EL   L+N   EL L V
Sbjct: 657 RNLDVEKILPKFSQQSEHTSKGT------TIKCHELLMRLNNFHPELKLIV 701


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 124/470 (26%), Positives = 217/470 (46%), Gaps = 54/470 (11%)

Query: 87  MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALG 146
           M ++N+L+GA   +        +   +   GL P   + N ++N  CK    + A   L 
Sbjct: 153 MVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILI 212

Query: 147 RILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGL 206
            +L    SPD  T   L+   C +  F+EA  +F + +    R  V+P+++ ++S+I   
Sbjct: 213 EMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEML----RQGVVPDLVSFSSLIAVF 268

Query: 207 CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266
            ++  +++  V F DMK  G+ PD  +Y  L+  YC         GN   AL++ +E + 
Sbjct: 269 SRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYC-------RNGNMLEALKIRDEML- 320

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
              E G  C  DV++Y +I+N LCK+ ++  A +LF +M  RG +PD   +++LI G+C 
Sbjct: 321 ---EQG--CVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQ 375

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN-- 384
            G +  A  LF ++      PD  +YNTLI+ + K+ ++E+A  L+  MIS  + P++  
Sbjct: 376 DGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHIT 435

Query: 385 -----------SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
                        + EA  L+  +     +  L   N ++ G C+S     A E   ++ 
Sbjct: 436 YGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMI 495

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAY---------DLLPDM------------EEKIR 472
             G  P+ ++Y  +I G   E  ++KA+          LLPD+            + +++
Sbjct: 496 AKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQ 555

Query: 473 ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
           E   A  +L KM ++ + PD  T + L       +N +E        L R
Sbjct: 556 E---AELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQR 602



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 127/482 (26%), Positives = 216/482 (44%), Gaps = 84/482 (17%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           L + G L    + N L+    K+  V  A+     ++R     +V TL  ++  LC  GK
Sbjct: 74  LRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNALCKDGK 133

Query: 173 F---------TEASGLFTKFVAFD------CRPNVI----------------PNVICYAS 201
           F          E +G++   V ++      CR  ++                P++  Y +
Sbjct: 134 FDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNA 193

Query: 202 IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261
           II+GLCK G   + + + ++M   G+ PD   YN+L+   C   N+ +AK       E+ 
Sbjct: 194 IINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAK-------EIF 246

Query: 262 EEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
            E +      GV+  PD++S+ S+I    ++  +D+A   F DMK  G++PD V+Y+ L+
Sbjct: 247 GEML----RQGVV--PDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLM 300

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
            GYC  G + +A K+   +  +GC+ D  +YNT++N   K + + +A  L+ EM+  G  
Sbjct: 301 HGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGAL 360

Query: 382 PD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
           PD             +  + +A  LF T+     + D+  +N L+DG CK   +  A EL
Sbjct: 361 PDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASEL 420

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-IRECL------------ 475
           +  +      PN +TY ++I   C  G + +A+ L   M EK I+  L            
Sbjct: 421 WDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCR 480

Query: 476 -----KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECM---------NLLPSFLS 521
                KA E L +M  + V PD I+ + L     +++N  +            LLP  ++
Sbjct: 481 SGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIIT 540

Query: 522 RN 523
            N
Sbjct: 541 YN 542



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 110/416 (26%), Positives = 192/416 (46%), Gaps = 30/416 (7%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L +A    N M      P + ++N+++  L  K  Y     +   +  IGL PD  + N 
Sbjct: 169 LEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNT 228

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+   C+    S+A    G +LR+   PD+V+   LI          +A   F     F 
Sbjct: 229 LLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKF- 287

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               ++P+ + Y  ++ G C++G + +   +  +M  +G   D   YN+++   C     
Sbjct: 288 ---GLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKML 344

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
            DA        +L +E V    E G +  PD  ++ ++I+  C+D  + KA  LF  M  
Sbjct: 345 TDAD-------KLFDEMV----ERGAL--PDFYTFTTLIHGHCQDGNMTKALSLFGTMTQ 391

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           R I PD+V Y++LIDG+C +G ++ A +L+  + S    P+  +Y  LIN+Y  +  V E
Sbjct: 392 RNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSE 451

Query: 368 ALSLYGEMISMGVRPD----NSCIL---------EAAELFRTLHNTKFELDLTVFNCLVD 414
           A  L+  MI  G++P     N+ I          +A E    +       D   +N L++
Sbjct: 452 AFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLIN 511

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           G  +   +  A+    K+ + G  P+++TY V++ G C +G +++A  +L  M EK
Sbjct: 512 GFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEK 567



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 101/403 (25%), Positives = 182/403 (45%), Gaps = 39/403 (9%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
            ++A   F  M+     P + SF+SL+   +  ++    +     +   GL+PD V   +
Sbjct: 239 FSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTV 298

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           LM+ +C+   + +A      +L +    DV+    ++ GLC +   T+A  LF + V   
Sbjct: 299 LMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMV--- 355

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
                +P+   + ++I G C+DG + K   LF  M  R I PD   YN+LI  +C     
Sbjct: 356 -ERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKV--- 411

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               G    A EL +      G +     P+ ++Y  +IN+ C    V +A  L+  M  
Sbjct: 412 ----GEMEKASELWD------GMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIE 461

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           +GI P +V  +++I GYC  G    A +    + ++G  PD  SYNTLIN + + + +++
Sbjct: 462 KGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDK 521

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           A     +M   G+ P                      D+  +N +++G C+  R++ A  
Sbjct: 522 AFLWINKMEKEGLLP----------------------DIITYNVVMNGFCRQGRMQEAEL 559

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           + +K+   G  P+  TYT +I G   +  + +A+    +M ++
Sbjct: 560 VLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQR 602



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 148/296 (50%), Gaps = 17/296 (5%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N++L  L  +K   +   L + +   G LPDF +   L++  C+   ++ A    G +
Sbjct: 330 AYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTM 389

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
            ++   PD+V    LI G C  G+  +AS L+   ++      + PN I Y  +I+  C 
Sbjct: 390 TQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMIS----RKIFPNHITYGILINAYCS 445

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
            G V++   L+  M  +GI P     N++I+ YC         G++S A    +EF+   
Sbjct: 446 VGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYC-------RSGDSSKA----DEFLGRM 494

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
              GV   PD +SY ++IN   ++  +DKA      M+  G++PD++ Y+ +++G+C  G
Sbjct: 495 IAKGVA--PDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQG 552

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           R+ +A  +   +  +G  PD S+Y  LIN +   + + EA   + EM+  G  PD+
Sbjct: 553 RMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGFAPDD 608



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 109/248 (43%), Gaps = 17/248 (6%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +  AL  F  M      P + ++N+L+              L + + +  + P+ ++  I
Sbjct: 379 MTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGI 438

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N +C +  VS+AF     ++ K   P +VT   +I+G C  G  ++A     + +A  
Sbjct: 439 LINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIA-- 496

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               V P+ I Y ++I+G  ++  ++K  +    M+  G+ PD   YN ++  +C     
Sbjct: 497 --KGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRM 554

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           ++A+      L L +    G        +PD  +Y ++IN       +++A     +M  
Sbjct: 555 QEAE------LVLRKMIEKG-------INPDRSTYTALINGHVTQDNLNEAFRFHDEMLQ 601

Query: 308 RGIIPDVV 315
           RG  PD V
Sbjct: 602 RGFAPDDV 609



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/230 (19%), Positives = 97/230 (42%), Gaps = 31/230 (13%)

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           +V+  LI  Y    ++ +  + F  + S+G +   ++ N+L+    KI+ VE A  ++ E
Sbjct: 49  LVFDLLIRTYVQARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHRE 108

Query: 375 MISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
           ++  G+  +             +    +       +       D+  +N L+   C+   
Sbjct: 109 VVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGL 168

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL---------PDMEEK-- 470
           L  A+E+   +   G +P++ TY  +I GLC +G   +A  +L         PD      
Sbjct: 169 LEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNT 228

Query: 471 --IRECLK-----AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECM 513
             +  C +     A E+  +M ++ V PD ++ S L  + +++ +  + +
Sbjct: 229 LLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQAL 278


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 125/454 (27%), Positives = 204/454 (44%), Gaps = 84/454 (18%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           L+++  + D VS N ++   C+  G  DA + L R++     P  V+   L+R LC + +
Sbjct: 69  LSSLPSVRDAVSYNTVLAALCRQGGCLDAALFLLRVMAHETRPTAVSYTTLMRALCAERR 128

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
             +A GL     A   RP+V+     Y ++I GLC    V+K   L  +M   GI P+  
Sbjct: 129 TGQAVGLLRDMQASGVRPDVVT----YGTLIRGLCDAADVDKAVELLREMCESGIEPNVV 184

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
           VY+ L++ YC A  WE          ++ EE  +G G       PDV+ Y  +I+SLC++
Sbjct: 185 VYSCLLQGYCKAGRWE-------CVSKVFEEM-SGRG-----IEPDVVMYTGLIDSLCRE 231

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             V KA ++   M  RG+ P+VV Y+ LI+  C  G + +A  L  ++  +G   D  +Y
Sbjct: 232 GKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTY 291

Query: 353 NTLINSYSKIEKVEEALSLYGEMI----------------------------SMGVR--- 381
           NTLI   S + +++EA+ L  EMI                            +  VR   
Sbjct: 292 NTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMM 351

Query: 382 PDNSC-------------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRL 422
            +N C                   + +A EL   + ++  E D   ++ L++G CK W++
Sbjct: 352 AENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQV 411

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------- 469
             A  L  K+ R G EP +V Y  ++  LC +G +E+A +   +M +             
Sbjct: 412 DRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDEMHKNCKLDVVAYSTMI 471

Query: 470 ----KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
               ++R+   A E L  M    + PD +T S+L
Sbjct: 472 HGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSML 505



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 112/443 (25%), Positives = 196/443 (44%), Gaps = 55/443 (12%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+ AL     M H +  P   S+ +L+ AL  ++     + L   +   G+ PD V+   
Sbjct: 95  LDAALFLLRVMAH-ETRPTAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGT 153

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK-------FTEASG-- 178
           L+   C    V  A   L  +      P+VV   CL++G C  G+       F E SG  
Sbjct: 154 LIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRG 213

Query: 179 ------LFTKFVAFDCRPNVI----------------PNVICYASIIDGLCKDGFVNKVR 216
                 ++T  +   CR   +                PNV+ Y  +I+ +CK+G V +  
Sbjct: 214 IEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAM 273

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            L  +M  +G+  DA  YN+LI      +  ++A G       L EE ++G      +  
Sbjct: 274 SLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMG-------LLEEMIHGE----TMVE 322

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+V+++ S+I+ LCK   + +A ++   M   G   ++V ++ LI G   + ++  A +L
Sbjct: 323 PNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMEL 382

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------N 384
              + S G  PD+ +Y+ LIN + K+ +V+ A SL  +M   G+ P+             
Sbjct: 383 MDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCE 442

Query: 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
             ++E A  F    +   +LD+  ++ ++ G C+    +SA E  K +   G  P+ VTY
Sbjct: 443 QGMMEQARNFFDEMHKNCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTY 502

Query: 445 TVMICGLCIEGGIEKAYDLLPDM 467
           +++I      G +  A  +L  M
Sbjct: 503 SMLINMFANSGDLGAAERVLKQM 525



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 136/327 (41%), Gaps = 58/327 (17%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL P+ V+ N+L+N  CK   V +A      +L K  + D VT   LI GL    +  EA
Sbjct: 248 GLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEA 307

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF------------------------- 211
            GL  + +  +    V PNV+ + S+I GLCK G                          
Sbjct: 308 MGLLEEMIHGETM--VEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNL 365

Query: 212 ----------VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTS------ 255
                     V K   L  +M   G+ PD+F Y+ LI  +C     + A+   S      
Sbjct: 366 LIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDG 425

Query: 256 ------------AAL---ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
                       AAL    + E+  N   E+   C  DV++Y ++I+  C+      A+E
Sbjct: 426 IEPELVHYIPLLAALCEQGMMEQARNFFDEMHKNCKLDVVAYSTMIHGACRLRDRKSAEE 485

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
               M   G+IPD V YS LI+ +   G +  A ++   + + G +PD + +++LI  Y 
Sbjct: 486 FLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVLKQMTASGFVPDVAVFDSLIKGYG 545

Query: 361 KIEKVEEALSLYGEMISMGVRPDNSCI 387
                E+ L L  EM +  +  D+  I
Sbjct: 546 AKGDTEKVLELIREMTAKDIALDSKII 572



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 140/338 (41%), Gaps = 23/338 (6%)

Query: 63  SGEVELNDALCFFNYMIHMQPT--PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           SG +E+++A+     MIH +    P + +FNS++  L           + + +   G   
Sbjct: 299 SGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCAC 358

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           + V+ N+L+    ++  V  A   +  +      PD  T   LI G C   +   A  L 
Sbjct: 359 NLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLL 418

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
           +K      R  + P ++ Y  ++  LC+ G + + R  F +M  +    D   Y+++I  
Sbjct: 419 SKMR----RDGIEPELVHYIPLLAALCEQGMMEQARNFFDEMH-KNCKLDVVAYSTMIHG 473

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
            C   + + A           EEF+    + G+I  PD ++Y  +IN       +  A+ 
Sbjct: 474 ACRLRDRKSA-----------EEFLKHMLDEGLI--PDSVTYSMLINMFANSGDLGAAER 520

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           +   M + G +PDV V+ SLI GY   G  +   +L   + ++    D+   +T+   Y+
Sbjct: 521 VLKQMTASGFVPDVAVFDSLIKGYGAKGDTEKVLELIREMTAKDIALDSKIISTI---YT 577

Query: 361 KIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398
            +    E  +L   +           ++ + EL   LH
Sbjct: 578 CLVANNEGKALLQSVPGFDTEVSKGAVISSHELTNMLH 615


>gi|115449873|ref|NP_001048572.1| Os02g0824000 [Oryza sativa Japonica Group]
 gi|113538103|dbj|BAF10486.1| Os02g0824000 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 122/446 (27%), Positives = 208/446 (46%), Gaps = 48/446 (10%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ P+  +    +  +C+  GV +AF     ++R     DVVTL  L+ GLC  G+F+EA
Sbjct: 234 GVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEA 293

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             LF +      +    PN + Y ++ID L K G   ++  L  +M  RG+  D   Y +
Sbjct: 294 YALFREM----DKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTA 349

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           L+       +W   +G T    +     ++ N        P+ ++Y  +I++LCK   VD
Sbjct: 350 LM-------DWLGKQGKTDEVKDTLRFALSDN------LSPNGVTYTVLIDALCKAHNVD 396

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A+++ L+M+ + I P+VV +SS+I+G+   G +D A +    ++  G  P+  +Y TLI
Sbjct: 397 EAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLI 456

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFE 403
           + + K +  + AL +Y +M+  GV+ +             N  I EA  LF+    +   
Sbjct: 457 DGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLS 516

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
           LD   +  L+DGL K+  + +A++  ++L      P+ V Y V I  LC+ G  ++A   
Sbjct: 517 LDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSF 576

Query: 464 LPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505
           L +M                    +  E  KA++LLH+M    +KP+ IT + L   L  
Sbjct: 577 LTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFG 636

Query: 506 DENCHECMNLLPSFLSRNQEESKLTR 531
                +   LL   +S     S LT 
Sbjct: 637 TGAVEKAKYLLNEMVSAGFSPSSLTH 662



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 154/346 (44%), Gaps = 30/346 (8%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           +LPD V  N+ +NC C +    +A   L  +      PD  T   +I   C +G+  +A 
Sbjct: 550 MLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKAL 609

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            L  +        ++ PN+I Y +++ GL   G V K + L  +M   G  P +  +  +
Sbjct: 610 KLLHEMKM----SSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRV 665

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           ++  C      D        L++HE  +N         H D+  Y +++  LC   +  K
Sbjct: 666 LQA-CSQSRRLDV------ILDIHEWMMNAG------LHADITVYNTLLQVLCYHGMTRK 712

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A  +  +M   GI PD + +++LI G+C    +D+A   +  +  +   P+ +++NTL+ 
Sbjct: 713 ATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLG 772

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFEL 404
               + ++ EA ++  EM   G+ P+N             S  +EA  L+  +    F  
Sbjct: 773 GLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVP 832

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
            ++ +N L+    K+  +  A ELFK + + G  P   TY +++ G
Sbjct: 833 KVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSG 878



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 108/398 (27%), Positives = 174/398 (43%), Gaps = 61/398 (15%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P  V+ NIL+         + A   L  + ++    D VT+  L+ GLC  G+   A+ L
Sbjct: 101 PTTVAYNILLAALSDH---AHAPAVLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAAL 157

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             +            +VI + ++I G C+ G       +   M  +G+  D   YN+L+ 
Sbjct: 158 ADRGGGIHAL-----DVIGWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVA 212

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            +C A   + A+G     L++ +E        GV   P+V +Y   I   C+   V++A 
Sbjct: 213 GFCRAGQVDAARG----VLDMMKE-------AGV--DPNVATYTPFIVYYCRTKGVEEAF 259

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           +L+  M   G++ DVV  S+L+ G C  GR  +A  LF  ++  G  P+  +Y TLI+S 
Sbjct: 260 DLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSL 319

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
           +K  + +E LSL GEM+S GV                       +DL  +  L+D L K 
Sbjct: 320 AKAGRGKELLSLLGEMVSRGV----------------------VMDLVTYTALMDWLGKQ 357

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK--------- 470
            +     +  +        PN VTYTV+I  LC    +++A  +L +MEEK         
Sbjct: 358 GKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTF 417

Query: 471 -------IRECL--KAIELLHKMAKRYVKPDEITVSIL 499
                  ++  L  KA E    M +R + P+ +T   L
Sbjct: 418 SSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTL 455



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 103/401 (25%), Positives = 174/401 (43%), Gaps = 39/401 (9%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
             ++A   F  M  +   P   ++ +L+ +LA        + L   + + G++ D V+  
Sbjct: 289 RFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYT 348

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            LM+   K     +    L   L    SP+ VT   LI  LC      EA  +  +    
Sbjct: 349 ALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEME-- 406

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
               ++ PNV+ ++S+I+G  K G ++K       MK RGI P+   Y +LI  +     
Sbjct: 407 --EKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGF-FKFQ 463

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            +D      AALE++ + +      GV  +  ++   S++N L ++  +++A  LF D  
Sbjct: 464 GQD------AALEVYHDMLCE----GVKVNKFIVD--SLVNGLRQNGKIEEAMALFKDAS 511

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
             G+  D V Y++LIDG    G +  A K    +     +PD   YN  IN    + K +
Sbjct: 512 GSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFK 571

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           EA S   EM +MG++PD S                       +N ++   C+      A 
Sbjct: 572 EAKSFLTEMRNMGLKPDQS----------------------TYNTMIVSHCRKGETAKAL 609

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +L  ++     +PN++TY  ++ GL   G +EKA  LL +M
Sbjct: 610 KLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEM 650



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 117/481 (24%), Positives = 183/481 (38%), Gaps = 117/481 (24%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           L P+ V+  +L++  CK   V +A   L  +  K  SP+VVT   +I G   +G   +A 
Sbjct: 375 LSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKA- 433

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCK--------------------------DGF 211
              T++        + PNV+ Y ++IDG  K                          D  
Sbjct: 434 ---TEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSL 490

Query: 212 VNKVR---------VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
           VN +R          LF D  G G+  D   Y +LI     A       G+   A +  +
Sbjct: 491 VNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKA-------GDMPTAFKFGQ 543

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
           E ++ N        PD + Y   IN LC      +AK    +M++ G+ PD   Y+++I 
Sbjct: 544 ELMDRN------MLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIV 597

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
            +C  G    A KL   ++     P+  +YNTL+        VE+A  L  EM+S G  P
Sbjct: 598 SHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSP 657

Query: 383 D---NSCILEAAELFR---------------------TLHNTKFEL-------------- 404
               +  +L+A    R                     T++NT  ++              
Sbjct: 658 SSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVL 717

Query: 405 ----------DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
                     D   FN L+ G CKS  L +A+  + ++      PN+ T+  ++ GL   
Sbjct: 718 EEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESV 777

Query: 455 GGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMN 514
           G I +A  +L +ME                 K  ++P+ +T  IL     K  N  E M 
Sbjct: 778 GRIGEAGTVLIEME-----------------KSGLEPNNLTYDILATGHGKQSNKVEAMR 820

Query: 515 L 515
           L
Sbjct: 821 L 821



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 117/277 (42%), Gaps = 19/277 (6%)

Query: 63  SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF 122
           +G VE   A    N M+    +P   +   +L A +  +     + + E +   GL  D 
Sbjct: 637 TGAVE--KAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADI 694

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
              N L+   C       A V L  +L    +PD +T   LI G C       A   + +
Sbjct: 695 TVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQ 754

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
            +      N+ PN+  + +++ GL   G + +   + ++M+  G+ P+   Y+ L     
Sbjct: 755 ML----HQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDIL----- 805

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
                   + N   A+ L+ E V G G +     P V +Y ++I+   K  ++ +AKELF
Sbjct: 806 --ATGHGKQSNKVEAMRLYCEMV-GKGFV-----PKVSTYNALISDFTKAGMMTQAKELF 857

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
            DM+ RG+ P    Y  L+ G+  + R   ++  + +
Sbjct: 858 KDMQKRGVHPTSCTYDILVSGWYDLAREQKSQNTYFT 894


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 124/451 (27%), Positives = 202/451 (44%), Gaps = 49/451 (10%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           S+N LL  LA      +       +   G +P+  +   L+   C+     +A      +
Sbjct: 19  SYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGM 78

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
             +  SP+V +   LI GLC   K  EA+ L  + +    +PNV+     Y S++ GLCK
Sbjct: 79  AAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVT----YGSLLSGLCK 134

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
            G + +   LF  M  RG  PD  VYN LI  +         KG+   A  L EE +   
Sbjct: 135 MGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGF-------SKKGDMGEAYRLFEEMLEKG 187

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                 C P V +Y S+++   +     + + LF DM  +G +P++  +++L+DG+C MG
Sbjct: 188 ------CIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMG 241

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----- 383
            + +A +LF+ + S GC PD  SYNTLI       K  EA  L  EMI  GV PD     
Sbjct: 242 DMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYN 301

Query: 384 --------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
                   +  +  A +LF  +  +  E D   ++ ++D LC++ ++ +A+ +FK +   
Sbjct: 302 ILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIAN 361

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKA 477
           G  P+      ++ GLC    + ++ +L   M +                  K +     
Sbjct: 362 GSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDV 421

Query: 478 IELLHKMAKRYVKPD-EITVSILEELLNKDE 507
            E+ H++ +R   PD EI+  ILE L   D+
Sbjct: 422 CEIFHELTERGFSPDVEISKVILETLRRSDD 452



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 153/340 (45%), Gaps = 44/340 (12%)

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
             + Y  +++ L K G  + V   + DM   G  P+ + Y  L+R  C A  +E+A+   
Sbjct: 16  GTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEAR--- 72

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
                       G    G  C P+V SY  +I  LC+   VD+A EL  +M   G  P+V
Sbjct: 73  --------SVFRGMAAQG--CSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNV 122

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           V Y SL+ G C MG++ +A  LF  +   GC PD   YN LI+ +SK   + EA  L+ E
Sbjct: 123 VTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEE 182

Query: 375 MISMGVRPD----NSCIL---------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
           M+  G  P     NS +              LF+ +       ++  FN L+DG CK   
Sbjct: 183 MLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGD 242

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA------------------YDL 463
           +  A  LF ++   G  P+VV+Y  +I G+C +G   +A                  Y++
Sbjct: 243 MVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNI 302

Query: 464 LPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELL 503
           L D   K      AI+L +++ K  ++PD  + S + + L
Sbjct: 303 LIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCL 342



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 167/382 (43%), Gaps = 39/382 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++++A    N MI     P + ++ SLL  L         + L  R+   G  PD V  N
Sbjct: 102 KVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYN 161

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +L++ F K   + +A+     +L K   P V T   L+ G   +G+F     LF   +  
Sbjct: 162 VLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDML-- 219

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             R   +PN+  + +++DG CK G + +   LFL+M+  G  PD   YN+LIR  C    
Sbjct: 220 --RQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMC---- 273

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
              +KG    A  L  E +           PD++SY  +I+   K   +D A +LF ++ 
Sbjct: 274 ---SKGKPHEAQRLLREMIRSG------VGPDIVSYNILIDGYSKSGALDHAIKLFYEIP 324

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
             G+ PD   YS++ID  C  G++  A  +F  + + G  PD +    L+    + E++ 
Sbjct: 325 KSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLT 384

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           E+  L+  M+         C+    E                +N L+  LCK+ R     
Sbjct: 385 ESCELFQAMVKF------ECVPLIPE----------------YNLLMYKLCKAKRSDDVC 422

Query: 427 ELFKKLPRYGPEPNVVTYTVMI 448
           E+F +L   G  P+V    V++
Sbjct: 423 EIFHELTERGFSPDVEISKVIL 444



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 141/309 (45%), Gaps = 21/309 (6%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           SK G+  + +A   F  M+     P + ++NSLL   + K  +     L + +   G +P
Sbjct: 168 SKKGD--MGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVP 225

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           +  + N L++ FCKM  + +A      +      PDVV+   LIRG+C +GK  EA  L 
Sbjct: 226 NIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLL 285

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            + +    R  V P+++ Y  +IDG  K G ++    LF ++   G+ PDAF Y+++I  
Sbjct: 286 REMI----RSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDC 341

Query: 241 YCCAVNWEDAKGNTSAALELHEEFV-NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            C A       G   AA  + ++ + NG+        PD      ++  LC+   + ++ 
Sbjct: 342 LCRA-------GKVGAAFVVFKDMIANGSA-------PDAAVVIPLVIGLCRGERLTESC 387

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           ELF  M     +P +  Y+ L+   C   R DD  ++F  +   G  PD      ++ + 
Sbjct: 388 ELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETL 447

Query: 360 SKIEKVEEA 368
            + +  + A
Sbjct: 448 RRSDDKDAA 456


>gi|48716316|dbj|BAD22929.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|48717088|dbj|BAD22861.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
          Length = 933

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 122/446 (27%), Positives = 208/446 (46%), Gaps = 48/446 (10%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ P+  +    +  +C+  GV +AF     ++R     DVVTL  L+ GLC  G+F+EA
Sbjct: 234 GVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEA 293

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             LF +      +    PN + Y ++ID L K G   ++  L  +M  RG+  D   Y +
Sbjct: 294 YALFREM----DKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTA 349

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           L+       +W   +G T    +     ++ N        P+ ++Y  +I++LCK   VD
Sbjct: 350 LM-------DWLGKQGKTDEVKDTLRFALSDN------LSPNGVTYTVLIDALCKAHNVD 396

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A+++ L+M+ + I P+VV +SS+I+G+   G +D A +    ++  G  P+  +Y TLI
Sbjct: 397 EAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLI 456

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFE 403
           + + K +  + AL +Y +M+  GV+ +             N  I EA  LF+    +   
Sbjct: 457 DGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLS 516

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
           LD   +  L+DGL K+  + +A++  ++L      P+ V Y V I  LC+ G  ++A   
Sbjct: 517 LDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSF 576

Query: 464 LPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505
           L +M                    +  E  KA++LLH+M    +KP+ IT + L   L  
Sbjct: 577 LTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFG 636

Query: 506 DENCHECMNLLPSFLSRNQEESKLTR 531
                +   LL   +S     S LT 
Sbjct: 637 TGAVEKAKYLLNEMVSAGFSPSSLTH 662



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 163/367 (44%), Gaps = 32/367 (8%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           +LPD V  N+ +NC C +    +A   L  +      PD  T   +I   C +G+  +A 
Sbjct: 550 MLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKAL 609

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            L  +        ++ PN+I Y +++ GL   G V K + L  +M   G  P +  +  +
Sbjct: 610 KLLHEMKM----SSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRV 665

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           ++  C      D        L++HE  +N         H D+  Y +++  LC   +  K
Sbjct: 666 LQA-CSQSRRLDV------ILDIHEWMMNAG------LHADITVYNTLLQVLCYHGMTRK 712

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A  +  +M   GI PD + +++LI G+C    +D+A   +  +  +   P+ +++NTL+ 
Sbjct: 713 ATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLG 772

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFEL 404
               + ++ EA ++  EM   G+ P+N             S  +EA  L+  +    F  
Sbjct: 773 GLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVP 832

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC-IEGGIEKAYDL 463
            ++ +N L+    K+  +  A ELFK + + G  P   TY +++ G   I  G E     
Sbjct: 833 KVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWSRIRNGTE-VKKC 891

Query: 464 LPDMEEK 470
           L DM+EK
Sbjct: 892 LKDMKEK 898



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 108/398 (27%), Positives = 174/398 (43%), Gaps = 61/398 (15%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P  V+ NIL+         + A   L  + ++    D VT+  L+ GLC  G+   A+ L
Sbjct: 101 PTTVAYNILLAALSDH---AHAPAVLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAAL 157

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             +            +VI + ++I G C+ G       +   M  +G+  D   YN+L+ 
Sbjct: 158 ADRGGGIHAL-----DVIGWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVA 212

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            +C A   + A+G     L++ +E        GV   P+V +Y   I   C+   V++A 
Sbjct: 213 GFCRAGQVDAARG----VLDMMKE-------AGV--DPNVATYTPFIVYYCRTKGVEEAF 259

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           +L+  M   G++ DVV  S+L+ G C  GR  +A  LF  ++  G  P+  +Y TLI+S 
Sbjct: 260 DLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSL 319

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
           +K  + +E LSL GEM+S GV                       +DL  +  L+D L K 
Sbjct: 320 AKAGRGKELLSLLGEMVSRGV----------------------VMDLVTYTALMDWLGKQ 357

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK--------- 470
            +     +  +        PN VTYTV+I  LC    +++A  +L +MEEK         
Sbjct: 358 GKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTF 417

Query: 471 -------IRECL--KAIELLHKMAKRYVKPDEITVSIL 499
                  ++  L  KA E    M +R + P+ +T   L
Sbjct: 418 SSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTL 455



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 103/401 (25%), Positives = 174/401 (43%), Gaps = 39/401 (9%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
             ++A   F  M  +   P   ++ +L+ +LA        + L   + + G++ D V+  
Sbjct: 289 RFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYT 348

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            LM+   K     +    L   L    SP+ VT   LI  LC      EA  +  +    
Sbjct: 349 ALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEME-- 406

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
               ++ PNV+ ++S+I+G  K G ++K       MK RGI P+   Y +LI  +     
Sbjct: 407 --EKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGF-FKFQ 463

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            +D      AALE++ + +      GV  +  ++   S++N L ++  +++A  LF D  
Sbjct: 464 GQD------AALEVYHDMLCE----GVKVNKFIVD--SLVNGLRQNGKIEEAMALFKDAS 511

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
             G+  D V Y++LIDG    G +  A K    +     +PD   YN  IN    + K +
Sbjct: 512 GSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFK 571

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           EA S   EM +MG++PD S                       +N ++   C+      A 
Sbjct: 572 EAKSFLTEMRNMGLKPDQS----------------------TYNTMIVSHCRKGETAKAL 609

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +L  ++     +PN++TY  ++ GL   G +EKA  LL +M
Sbjct: 610 KLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEM 650



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 127/299 (42%), Gaps = 19/299 (6%)

Query: 63  SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF 122
           +G VE   A    N M+    +P   +   +L A +  +     + + E +   GL  D 
Sbjct: 637 TGAVE--KAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADI 694

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
              N L+   C       A V L  +L    +PD +T   LI G C       A   + +
Sbjct: 695 TVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQ 754

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
            +      N+ PN+  + +++ GL   G + +   + ++M+  G+ P+   Y+ L     
Sbjct: 755 ML----HQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDIL----- 805

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
                   + N   A+ L+ E V G G +     P V +Y ++I+   K  ++ +AKELF
Sbjct: 806 --ATGHGKQSNKVEAMRLYCEMV-GKGFV-----PKVSTYNALISDFTKAGMMTQAKELF 857

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
            DM+ RG+ P    Y  L+ G+  +    + +K    ++ +G  P   + + +  ++SK
Sbjct: 858 KDMQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSPSKGTLSFICRAFSK 916



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 101/233 (43%), Gaps = 22/233 (9%)

Query: 107 ICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166
           + L E L + G+ PD ++ N L+   CK   + +AF    ++L +  SP++ T   L+ G
Sbjct: 715 VVLEEMLGS-GIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGG 773

Query: 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRV--LFLDMKG 224
           L   G+  EA  +  +      +  + PN + Y  +  G  K    NKV    L+ +M G
Sbjct: 774 LESVGRIGEAGTVLIEME----KSGLEPNNLTYDILATGHGKQS--NKVEAMRLYCEMVG 827

Query: 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCS 284
           +G  P    YN+LI  +  A       G  + A EL ++      + GV  HP   +Y  
Sbjct: 828 KGFVPKVSTYNALISDFTKA-------GMMTQAKELFKDMQ----KRGV--HPTSCTYDI 874

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           +++   +     + K+   DMK +G  P     S +   +   G    A++L 
Sbjct: 875 LVSGWSRIRNGTEVKKCLKDMKEKGFSPSKGTLSFICRAFSKPGMTWQAQRLL 927


>gi|222623943|gb|EEE58075.1| hypothetical protein OsJ_08937 [Oryza sativa Japonica Group]
          Length = 933

 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 122/446 (27%), Positives = 208/446 (46%), Gaps = 48/446 (10%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ P+  +    +  +C+  GV +AF     ++R     DVVTL  L+ GLC  G+F+EA
Sbjct: 234 GVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEA 293

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             LF +      +    PN + Y ++ID L K G   ++  L  +M  RG+  D   Y +
Sbjct: 294 YALFREM----DKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTA 349

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           L+       +W   +G T    +     ++ N        P+ ++Y  +I++LCK   VD
Sbjct: 350 LM-------DWLGKQGKTDEVKDTLRFALSDN------LSPNGVTYTVLIDALCKAHNVD 396

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A+++ L+M+ + I P+VV +SS+I+G+   G +D A +    ++  G  P+  +Y TLI
Sbjct: 397 EAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLI 456

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFE 403
           + + K +  + AL +Y +M+  GV+ +             N  I EA  LF+    +   
Sbjct: 457 DGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLS 516

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
           LD   +  L+DGL K+  + +A++  ++L      P+ V Y V I  LC+ G  ++A   
Sbjct: 517 LDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSF 576

Query: 464 LPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505
           L +M                    +  E  KA++LLH+M    +KP+ IT + L   L  
Sbjct: 577 LTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFG 636

Query: 506 DENCHECMNLLPSFLSRNQEESKLTR 531
                +   LL   +S     S LT 
Sbjct: 637 TGAVEKAKYLLNEMVSAGFSPSSLTH 662



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 163/367 (44%), Gaps = 32/367 (8%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           +LPD V  N+ +NC C +    +A   L  +      PD  T   +I   C +G+  +A 
Sbjct: 550 MLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKAL 609

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            L  +        ++ PN+I Y +++ GL   G V K + L  +M   G  P +  +  +
Sbjct: 610 KLLHEMKM----SSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRV 665

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           ++  C      D        L++HE  +N         H D+  Y +++  LC   +  K
Sbjct: 666 LQA-CSQSRRLDV------ILDIHEWMMNAG------LHADITVYNTLLQVLCYHGMTRK 712

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A  +  +M   GI PD + +++LI G+C    +D+A   +  +  +   P+ +++NTL+ 
Sbjct: 713 ATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLG 772

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFEL 404
               + ++ EA ++  EM   G+ P+N             S  +EA  L+  +    F  
Sbjct: 773 GLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVP 832

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC-IEGGIEKAYDL 463
            ++ +N L+    K+  +  A ELFK + + G  P   TY +++ G   I  G E     
Sbjct: 833 KVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWSRIRNGTE-VKKC 891

Query: 464 LPDMEEK 470
           L DM+EK
Sbjct: 892 LKDMKEK 898



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 103/401 (25%), Positives = 174/401 (43%), Gaps = 39/401 (9%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
             ++A   F  M  +   P   ++ +L+ +LA        + L   + + G++ D V+  
Sbjct: 289 RFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYT 348

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            LM+   K     +    L   L    SP+ VT   LI  LC      EA  +  +    
Sbjct: 349 ALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEME-- 406

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
               ++ PNV+ ++S+I+G  K G ++K       MK RGI P+   Y +LI  +     
Sbjct: 407 --EKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGF-FKFQ 463

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            +D      AALE++ + +      GV  +  ++   S++N L ++  +++A  LF D  
Sbjct: 464 GQD------AALEVYHDMLCE----GVKVNKFIVD--SLVNGLRQNGKIEEAMALFKDAS 511

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
             G+  D V Y++LIDG    G +  A K    +     +PD   YN  IN    + K +
Sbjct: 512 GSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFK 571

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           EA S   EM +MG++PD S                       +N ++   C+      A 
Sbjct: 572 EAKSFLTEMRNMGLKPDQS----------------------TYNTMIVSHCRKGETAKAL 609

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +L  ++     +PN++TY  ++ GL   G +EKA  LL +M
Sbjct: 610 KLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEM 650



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 172/400 (43%), Gaps = 65/400 (16%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P  V+ NIL+         + A   L  + ++    D VT+  L+ GLC  G+   A+ L
Sbjct: 101 PTTVAYNILLAALSDH---AHAPAVLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAAL 157

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFL--DMKGRGIYPDAFVYNSL 237
             +          I   +  A  +  L   GF +    L +   M  +G+  D   YN+L
Sbjct: 158 ADRAGG-------ITPWMSSAGTLSLLDIAGFGDTPAALSVADRMTAQGLPMDVVGYNTL 210

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           +  +C A   + A+G     L++ +E        GV   P+V +Y   I   C+   V++
Sbjct: 211 VAGFCRAGQVDAARG----VLDMMKE-------AGV--DPNVATYTPFIVYYCRTKGVEE 257

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A +L+  M   G++ DVV  S+L+ G C  GR  +A  LF  ++  G  P+  +Y TLI+
Sbjct: 258 AFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLID 317

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
           S +K  + +E LSL GEM+S GV                       +DL  +  L+D L 
Sbjct: 318 SLAKAGRGKELLSLLGEMVSRGV----------------------VMDLVTYTALMDWLG 355

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK------- 470
           K  +     +  +        PN VTYTV+I  LC    +++A  +L +MEEK       
Sbjct: 356 KQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVV 415

Query: 471 ---------IRECL--KAIELLHKMAKRYVKPDEITVSIL 499
                    ++  L  KA E    M +R + P+ +T   L
Sbjct: 416 TFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTL 455



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 127/299 (42%), Gaps = 19/299 (6%)

Query: 63  SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF 122
           +G VE   A    N M+    +P   +   +L A +  +     + + E +   GL  D 
Sbjct: 637 TGAVE--KAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADI 694

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
              N L+   C       A V L  +L    +PD +T   LI G C       A   + +
Sbjct: 695 TVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQ 754

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
            +      N+ PN+  + +++ GL   G + +   + ++M+  G+ P+   Y+ L     
Sbjct: 755 ML----HQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDIL----- 805

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
                   + N   A+ L+ E V G G +     P V +Y ++I+   K  ++ +AKELF
Sbjct: 806 --ATGHGKQSNKVEAMRLYCEMV-GKGFV-----PKVSTYNALISDFTKAGMMTQAKELF 857

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
            DM+ RG+ P    Y  L+ G+  +    + +K    ++ +G  P   + + +  ++SK
Sbjct: 858 KDMQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSPSKGTLSFICRAFSK 916



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 101/233 (43%), Gaps = 22/233 (9%)

Query: 107 ICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166
           + L E L + G+ PD ++ N L+   CK   + +AF    ++L +  SP++ T   L+ G
Sbjct: 715 VVLEEMLGS-GIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGG 773

Query: 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRV--LFLDMKG 224
           L   G+  EA  +  +      +  + PN + Y  +  G  K    NKV    L+ +M G
Sbjct: 774 LESVGRIGEAGTVLIEME----KSGLEPNNLTYDILATGHGKQS--NKVEAMRLYCEMVG 827

Query: 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCS 284
           +G  P    YN+LI  +  A       G  + A EL ++      + GV  HP   +Y  
Sbjct: 828 KGFVPKVSTYNALISDFTKA-------GMMTQAKELFKDMQ----KRGV--HPTSCTYDI 874

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           +++   +     + K+   DMK +G  P     S +   +   G    A++L 
Sbjct: 875 LVSGWSRIRNGTEVKKCLKDMKEKGFSPSKGTLSFICRAFSKPGMTWQAQRLL 927


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 112/419 (26%), Positives = 199/419 (47%), Gaps = 32/419 (7%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           ++G+V+   A+   + M +    P + +FNS+L  L   + +     +   ++   + PD
Sbjct: 204 RAGDVDA--AIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPD 261

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             S NIL+  FC++  V +A      + ++  +PDVV+  CLI     +GK   A+    
Sbjct: 262 VRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLR 321

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           +         ++P+ + Y  +I G C+ G +++   +  +M G G  PD   YN+L+   
Sbjct: 322 EMKGL----GLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGL 377

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C      DA           EE +N   E GV   PD+ ++ ++I+  C+D   +KA +L
Sbjct: 378 CKQHRLLDA-----------EELLNEMKERGVT--PDLCTFTTLIHGYCRDGNFEKALQL 424

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F  +  + + PDVV Y+SLIDG C  G +  A +L+  + +    P+  +Y+ LI+S+ +
Sbjct: 425 FDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCE 484

Query: 362 IEKVEEALSLYGEMISMGVRPD----NSCI---------LEAAELFRTLHNTKFELDLTV 408
             +VEEA     EM+S G  P+    NS I          +  +  + +       DL  
Sbjct: 485 KGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLIT 544

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           FN L+ G  K   +  A+ +F  + +   +P+ VTY ++I G   +G +E+A  +   M
Sbjct: 545 FNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKM 603



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 115/424 (27%), Positives = 190/424 (44%), Gaps = 48/424 (11%)

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           +LNI+++ +CK +    A   +  + ++   PDVVT   LI      G    A  L    
Sbjct: 159 TLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSM 218

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
                   + P ++ + S++ GLCK    +K + +F  M    + PD   +N LI  +C 
Sbjct: 219 ----ANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCR 274

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                   G    A++ ++E      + GV   PDV+S+  +I        +D A     
Sbjct: 275 V-------GEVEEAMKFYKEM----QQRGVT--PDVVSFSCLIGLFSTRGKMDHAAAYLR 321

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
           +MK  G++PD V+Y+ +I G+C  G + +A ++   +   GC+PD  +YNTL+N   K  
Sbjct: 322 EMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQH 381

Query: 364 KVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFN 410
           ++ +A  L  EM   GV PD             +    +A +LF TL + +   D+  +N
Sbjct: 382 RLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYN 441

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            L+DG+C+   L  A EL+  +      PN VTY+++I   C +G +E+A+  L +M  K
Sbjct: 442 SLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSK 501

Query: 471 IR------------------ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHEC 512
                                  K  + L KM +  + PD IT + L     K+EN H  
Sbjct: 502 GNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGA 561

Query: 513 MNLL 516
            N+ 
Sbjct: 562 FNVF 565



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 102/377 (27%), Positives = 169/377 (44%), Gaps = 31/377 (8%)

Query: 44  VSTVEEKTKLLKYLSENSKSGEV--------------ELNDALCFFNYMIHMQPTPFMPS 89
           V  VEE  K  K + +   + +V              +++ A  +   M  +   P    
Sbjct: 275 VGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVI 334

Query: 90  FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149
           +  ++G           + + + +  +G LPD V+ N L+N  CK   + DA   L  + 
Sbjct: 335 YTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMK 394

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD 209
            +  +PD+ T   LI G C  G F +A  LF   +    RP+V+     Y S+IDG+C+ 
Sbjct: 395 ERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVV----AYNSLIDGMCRK 450

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
           G + K   L+ DM  R I+P+   Y+ LI  +C        KG    A    +E V+  G
Sbjct: 451 GDLAKANELWDDMHAREIFPNHVTYSILIDSHC-------EKGQVEEAFGFLDEMVS-KG 502

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
            L     P++++Y SII   C+   V K ++    M    I+PD++ +++LI GY     
Sbjct: 503 NL-----PNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEEN 557

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE 389
           +  A  +F  +E E   PD  +YN +IN +S+   +EEA  ++ +M + G+ PD    + 
Sbjct: 558 MHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMS 617

Query: 390 AAELFRTLHNTKFELDL 406
                 T  N+K    L
Sbjct: 618 LINGHVTAGNSKEAFQL 634



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 141/306 (46%), Gaps = 43/306 (14%)

Query: 230 DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSL 289
           +A+  N ++  YC ++ ++ A    S   E+ +  V           PDV+++  +I++ 
Sbjct: 156 NAYTLNIMVHSYCKSLEFDKADTVIS---EMEKRCV----------FPDVVTHNVLIDAR 202

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
            +   VD A  L   M ++G+ P +V ++S++ G C   R D A+++F +++     PD 
Sbjct: 203 FRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDV 262

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---SCIL----------EAAELFRT 396
            S+N LI  + ++ +VEEA+  Y EM   GV PD    SC++           AA   R 
Sbjct: 263 RSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLRE 322

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           +       D  ++  ++ G C++  +  A  +  ++   G  P+VVTY  ++ GLC    
Sbjct: 323 MKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLC---- 378

Query: 457 IEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                        K    L A ELL++M +R V PD  T + L     +D N  + + L 
Sbjct: 379 -------------KQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLF 425

Query: 517 PSFLSR 522
            + L +
Sbjct: 426 DTLLHQ 431


>gi|218191848|gb|EEC74275.1| hypothetical protein OsI_09511 [Oryza sativa Indica Group]
          Length = 933

 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 123/446 (27%), Positives = 209/446 (46%), Gaps = 48/446 (10%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ P+  +    +  +C+  GV +AF     ++R     DVVTL  L+ GLC  G+F+EA
Sbjct: 234 GVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEA 293

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             LF +      +   +PN + Y ++ID L K G   ++  L  +M  RG+  D   Y +
Sbjct: 294 YALFREM----DKVGAVPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTA 349

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           L+       +W   +G T    +     ++ N  L      + ++Y  +I++LCK   VD
Sbjct: 350 LM-------DWLGKQGKTDEVKDTLRFALSDNLSL------NGVTYTVLIDALCKAHNVD 396

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A+++ L+M+ + I P+VV +SS+I+G+   G +D A +    ++  G  P+  +Y TLI
Sbjct: 397 EAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLI 456

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFE 403
           + + K +  + AL +Y +M+  GV  +             N  I EA  LF+    +   
Sbjct: 457 DGFFKFQGQDAALEVYHDMLCEGVEVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLS 516

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
           LD   +  L+DGL K+  + +A++  ++L      P+ V Y V I  LCI G  ++A  +
Sbjct: 517 LDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCILGKFKEAKSI 576

Query: 464 LPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505
           L +M                    +  E  KA++LLH+M    +KP+ IT + L   L  
Sbjct: 577 LTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFG 636

Query: 506 DENCHECMNLLPSFLSRNQEESKLTR 531
                +   LL   +S     S LT 
Sbjct: 637 TGAVEKAKYLLNEMVSAGFSPSSLTH 662



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 163/367 (44%), Gaps = 32/367 (8%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           +LPD V  N+ +NC C +    +A   L  +      PD  T   +I   C +G+  +A 
Sbjct: 550 MLPDAVVYNVFINCLCILGKFKEAKSILTEMRNMGLKPDQSTYNTMIVSHCRKGETAKAL 609

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            L  +        ++ PN+I Y +++ GL   G V K + L  +M   G  P +  +  +
Sbjct: 610 KLLHEMKM----SSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRV 665

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           ++  C      D        L++HE  +N         H D+  Y +++  LC   +  K
Sbjct: 666 LQA-CSQSRRLDV------ILDIHEWMMNAG------LHADITVYNTLLQVLCYHGMTRK 712

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A  +  +M   GI PD + +++LI G+C    +D+A   +  +  +   P+ +++NTL+ 
Sbjct: 713 ATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLG 772

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFEL 404
               + ++ EA ++  EM   G+ P+N             S  +EA  L+  +    F  
Sbjct: 773 GLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILVTGHGKQSNKVEAMRLYCEMVGKGFVP 832

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC-IEGGIEKAYDL 463
            ++ +N L+    K+  +  A ELFK + + G  P   TY +++ G   I  G E     
Sbjct: 833 KVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWSRIRNGTE-VKKC 891

Query: 464 LPDMEEK 470
           L DM+EK
Sbjct: 892 LKDMKEK 898



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 112/428 (26%), Positives = 185/428 (43%), Gaps = 52/428 (12%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P  V+ NIL+         + A   L  + ++    D VT+  L+ GLC  G+   A+ L
Sbjct: 101 PTTVAYNILLAALSDH---AHAPAVLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAAL 157

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             +            +VI + ++I G C+ G       +   M  +G+  D   YN+L+ 
Sbjct: 158 ADRGGGIHAL-----DVIGWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVA 212

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            +C A   + A+G     L++ +E        GV   P+V +Y   I   C+   V++A 
Sbjct: 213 GFCRAGQVDAARG----VLDMMKE-------AGV--DPNVATYTPFIVYYCRTKGVEEAF 259

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           +L+  M   G++ DVV  S+L+ G C  GR  +A  LF  ++  G +P+  +Y TLI+S 
Sbjct: 260 DLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAVPNHVTYCTLIDSL 319

Query: 360 SKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDL 406
           +K  + +E LSL GEM+S GV  D                  E  +  R   +    L+ 
Sbjct: 320 AKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSLNG 379

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA------ 460
             +  L+D LCK+  +  A ++  ++      PNVVT++ +I G    G ++KA      
Sbjct: 380 VTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRM 439

Query: 461 ------------YDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDEN 508
                       Y  L D   K +    A+E+ H M    V+ ++  V  L   L ++  
Sbjct: 440 MKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVEVNKFIVDSLVNGLRQNGK 499

Query: 509 CHECMNLL 516
             E M L 
Sbjct: 500 IEEAMALF 507



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 174/401 (43%), Gaps = 39/401 (9%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
             ++A   F  M  +   P   ++ +L+ +LA        + L   + + G++ D V+  
Sbjct: 289 RFSEAYALFREMDKVGAVPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYT 348

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            LM+   K     +    L   L    S + VT   LI  LC      EA  +  +    
Sbjct: 349 ALMDWLGKQGKTDEVKDTLRFALSDNLSLNGVTYTVLIDALCKAHNVDEAEQVLLEME-- 406

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
               ++ PNV+ ++S+I+G  K G ++K       MK RGI P+   Y +LI  +     
Sbjct: 407 --EKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGF-FKFQ 463

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            +D      AALE++ + +      GV  +  ++   S++N L ++  +++A  LF D  
Sbjct: 464 GQD------AALEVYHDMLCE----GVEVNKFIVD--SLVNGLRQNGKIEEAMALFKDAS 511

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
             G+  D V Y++LIDG    G +  A K    +     +PD   YN  IN    + K +
Sbjct: 512 GSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCILGKFK 571

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           EA S+  EM +MG++PD S                       +N ++   C+      A 
Sbjct: 572 EAKSILTEMRNMGLKPDQS----------------------TYNTMIVSHCRKGETAKAL 609

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +L  ++     +PN++TY  ++ GL   G +EKA  LL +M
Sbjct: 610 KLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEM 650



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 128/299 (42%), Gaps = 19/299 (6%)

Query: 63  SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF 122
           +G VE   A    N M+    +P   +   +L A +  +     + + E +   GL  D 
Sbjct: 637 TGAVE--KAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADI 694

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
              N L+   C       A V L  +L    +PD +T   LI G C       A   + +
Sbjct: 695 TVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQ 754

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
            +      N+ PN+  + +++ GL   G + +   + ++M+  G+ P+   Y+ L     
Sbjct: 755 ML----HQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDIL----- 805

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
             V     + N   A+ L+ E V G G +     P V +Y ++I+   K  ++ +AKELF
Sbjct: 806 --VTGHGKQSNKVEAMRLYCEMV-GKGFV-----PKVSTYNALISDFTKAGMMTQAKELF 857

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
            DM+ RG+ P    Y  L+ G+  +    + +K    ++ +G  P   + + +  ++SK
Sbjct: 858 KDMQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSPSKGTLSFICRAFSK 916



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 102/233 (43%), Gaps = 22/233 (9%)

Query: 107 ICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166
           + L E L + G+ PD ++ N L+   CK   + +AF    ++L +  SP++ T   L+ G
Sbjct: 715 VVLEEMLGS-GIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGG 773

Query: 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRV--LFLDMKG 224
           L   G+  EA  +  +      +  + PN + Y  ++ G  K    NKV    L+ +M G
Sbjct: 774 LESVGRIGEAGTVLIEME----KSGLEPNNLTYDILVTGHGKQS--NKVEAMRLYCEMVG 827

Query: 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCS 284
           +G  P    YN+LI  +  A       G  + A EL ++      + GV  HP   +Y  
Sbjct: 828 KGFVPKVSTYNALISDFTKA-------GMMTQAKELFKDMQ----KRGV--HPTSCTYDI 874

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           +++   +     + K+   DMK +G  P     S +   +   G    A++L 
Sbjct: 875 LVSGWSRIRNGTEVKKCLKDMKEKGFSPSKGTLSFICRAFSKPGMTWQAQRLL 927


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 115/471 (24%), Positives = 209/471 (44%), Gaps = 50/471 (10%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + ++N+L+ A + +        L   + + G  P   + N ++N  CK      A   
Sbjct: 258 PDIVTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEV 317

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
              +LR   SPD  T   L+   C +G   E   +F+   + D    V+P+++C++S++ 
Sbjct: 318 FAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRD----VVPDLVCFSSMMS 373

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
              + G ++K  + F  +K  G+ PD  +Y  LI+ YC        KG  S A+ L  E 
Sbjct: 374 LFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYC-------RKGMISEAMNLRNEM 426

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           +         C  DV++Y +I++ LCK  ++ +A +LF +M  RG+ PD    + LIDG+
Sbjct: 427 LQQG------CAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGH 480

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP-- 382
           C +G + +A +LF  ++ +    D  +YNTL++ + K+  ++ A  ++ +M+S  + P  
Sbjct: 481 CKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTP 540

Query: 383 -----------DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
                          + EA  ++  + +   +  + + N ++ G C+S          +K
Sbjct: 541 ISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEK 600

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI-------------------- 471
           +   G  P+ ++Y  +I G   E  + KA+ L+  MEEK                     
Sbjct: 601 MISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRE 660

Query: 472 RECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
            +  +A  +L KM +R V PD  T + L       +N  E        L R
Sbjct: 661 NQMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQR 711



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/393 (26%), Positives = 186/393 (47%), Gaps = 30/393 (7%)

Query: 91  NSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILR 150
           N+L+G+L    +      + + ++  G+  +  +LNI++N  CK   +      L  +  
Sbjct: 194 NALIGSLVRIGWVELAWRIYQEISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQE 253

Query: 151 KVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDG 210
           K   PD+VT   LI     QG   EA  L     +        P V  Y ++I+GLCK G
Sbjct: 254 KGVYPDIVTYNTLISAYSSQGLMEEAFELMHAMPS----KGFSPGVYTYNTVINGLCKHG 309

Query: 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGE 270
              + + +F +M   G+ PD+  Y SL+   C        KG+   A+E    F +    
Sbjct: 310 KYERAKEVFAEMLRSGLSPDSTTYRSLLMEAC-------KKGD---AVETENIFSDMRSR 359

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
             V   PD++ + S+++   +   +DKA   F  +K  G+IPD V+Y+ LI GYC  G I
Sbjct: 360 DVV---PDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMI 416

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL-- 388
            +A  L   +  +GC  D  +YNT+++   K + + EA  L+ EM   G+ PD+  +   
Sbjct: 417 SEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTIL 476

Query: 389 -----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
                       A ELF+ +   + +LD+  +N L+DG  K   + +A E++  +     
Sbjct: 477 IDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEI 536

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            P  +++++++  LC +G + +A+ +  +M  K
Sbjct: 537 LPTPISFSILVNALCSKGHLSEAFRVWDEMISK 569



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 103/430 (23%), Positives = 185/430 (43%), Gaps = 48/430 (11%)

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            ++L+  F +   + +A+ A   +  K ++  +     LI  L   G    A  ++ +  
Sbjct: 158 FDLLIRTFVQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEI- 216

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
               R  V  NV     +++ LCKDG + KV     +++ +G+YPD   YN+LI  Y   
Sbjct: 217 ---SRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAY--- 270

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                ++G    A EL     +          P V +Y ++IN LCK    ++AKE+F +
Sbjct: 271 ----SSQGLMEEAFELMHAMPSKG------FSPGVYTYNTVINGLCKHGKYERAKEVFAE 320

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M   G+ PD   Y SL+   C  G   +   +F  + S   +PD   ++++++ +++   
Sbjct: 321 MLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGN 380

Query: 365 VEEALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFELDLTVFNC 411
           +++AL  +  +   G+ PDN               I EA  L   +      +D+  +N 
Sbjct: 381 LDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNT 440

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE-- 469
           ++ GLCK   L  A +LF ++   G  P+  T T++I G C  G ++ A +L   M+E  
Sbjct: 441 ILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKR 500

Query: 470 ----------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECM 513
                           K+ +   A E+   M  + + P  I+ SIL   L    +  E  
Sbjct: 501 IKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAF 560

Query: 514 NLLPSFLSRN 523
            +    +S++
Sbjct: 561 RVWDEMISKS 570



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 149/319 (46%), Gaps = 19/319 (5%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +++A+   N M+       + ++N++L  L  +K       L   +   GL PD  +L I
Sbjct: 416 ISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTI 475

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++  CK+  + +A     ++  K    DVVT   L+ G    G    A  ++   V+  
Sbjct: 476 LIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVS-- 533

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               ++P  I ++ +++ LC  G +++   ++ +M  + I P   + NS+I+ YC + N 
Sbjct: 534 --KEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNA 591

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM-- 305
            D  G       + E FV           PD +SY ++I    K+  + KA  L   M  
Sbjct: 592 SD--GEIFLEKMISEGFV-----------PDCISYNTLIYGFVKEENMSKAFGLVKKMEE 638

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
           K  G++PDV  Y+S++ G+C   ++ +A  +   +   G  PD S+Y +LIN +   + +
Sbjct: 639 KQGGLVPDVFTYNSILHGFCRENQMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQDNL 698

Query: 366 EEALSLYGEMISMGVRPDN 384
            EA   + EM+  G  PD+
Sbjct: 699 TEAFRFHDEMLQRGFSPDD 717



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 5/153 (3%)

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           S++I      GR+ DA+   + +     +      N+L+++YS     +    L   +I 
Sbjct: 107 SAMIHILVRSGRLSDAQSCVLRMIRRSGVSRVEIVNSLVSTYSNCGSNDSVFDL---LIR 163

Query: 378 MGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
             V+     + EA E F  L +  + + +   N L+  L +   +  AW +++++ R G 
Sbjct: 164 TFVQARK--LREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEISRSGV 221

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
             NV T  +M+  LC +G +EK    L +++EK
Sbjct: 222 GVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEK 254


>gi|77552391|gb|ABA95188.1| salt-inducible protein, putative [Oryza sativa Japonica Group]
          Length = 938

 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 125/435 (28%), Positives = 205/435 (47%), Gaps = 42/435 (9%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +N+A+   N M +   TP    +  L+     K    N   + E +    + PD V+ NI
Sbjct: 533 MNEAVKLLNEMKYGGLTPDKIHYTCLISGYCLKGEMQNAQQVFEEMLKANIEPDIVTYNI 592

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L + FCK   V + F  L R+  +   P+ +T G  I G C  G  +EA  LF       
Sbjct: 593 LASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRGGNLSEAEVLFNVV---- 648

Query: 188 CRPNVIPNV-ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                I ++ + Y+S++ G    G+ +   +LF+ +  +G   D F  + LI   C   N
Sbjct: 649 -EEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLINDLCRVGN 707

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            + A       LE H+              PDV+SY  +I+  C++  +DKA   F DM 
Sbjct: 708 VQGASNVCKIMLE-HDVV------------PDVISYSKLISIYCQNGDMDKAHLWFHDMV 754

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            RG+  DV+VY+ L++GYC  GR+ +A +LFV + + G  PD  +Y  L++ + K    +
Sbjct: 755 QRGLSVDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQ 814

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
               +  E  S  +R +++      +L  ++ + + E D+  +  L+DG CK+  L  A 
Sbjct: 815 GWEGIAKERRSFLLRANHN------KLLSSMKDMQIEPDVPCYTVLIDGKCKAEYLVEAR 868

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAK 486
           ELF ++ + G  P+   YT +I G C +G I KA DLL +M +K                
Sbjct: 869 ELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDK---------------- 912

Query: 487 RYVKPDEITVSILEE 501
             ++PDE+T S+L +
Sbjct: 913 -GIEPDELTFSVLNQ 926



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 171/404 (42%), Gaps = 39/404 (9%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++   +C F+ +  +   P + ++N LL  +A    Y   +     +    L PD  +  
Sbjct: 287 DVQATICLFSGICRLGVVPSVWTWNLLLKFIAETGEYEMVLAAYNEMKCFQLTPDVYTFA 346

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           I+     +   V +A      +      PD       + GLC  GK+  A  +  +    
Sbjct: 347 IVTRSLFQAKKVDEALQVWAEMTEMGVKPDARGYSSFLIGLCDCGKYDLAYVILQEIN-- 404

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             R  V    + Y  ++DGLCK+  +++   L  +   +G  PD + Y+ LIR YC    
Sbjct: 405 --REKVPVEAMAYNMVMDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIRSYC---- 458

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                GN   A++ +E  V+   E    CH  ++SY  ++    K  +  +A   FL  K
Sbjct: 459 ---KMGNLINAVDHYEAMVSHGIETN--CH--IVSY--LLQCFRKLGMTSEAIAYFLKFK 509

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
             G+  D V+Y+  +D YC  G +++A KL   ++  G  PD   Y  LI+ Y    +++
Sbjct: 510 DSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKYGGLTPDKIHYTCLISGYCLKGEMQ 569

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
            A  ++ EM+   + P                      D+  +N L  G CKS  +   +
Sbjct: 570 NAQQVFEEMLKANIEP----------------------DIVTYNILASGFCKSGLVMEVF 607

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           +L  ++   G EPN +TY + I G C  G + +A  L   +EEK
Sbjct: 608 DLLDRMADQGLEPNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEK 651



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 120/260 (46%), Gaps = 11/260 (4%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           R+   G L D  S + L+N  C++  V  A      +L     PDV++   LI   C  G
Sbjct: 682 RVARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHDVVPDVISYSKLISIYCQNG 741

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
              +A   F   V    +  +  +VI Y  +++G CK G + +   LF+ M   GI PD 
Sbjct: 742 DMDKAHLWFHDMV----QRGLSVDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDV 797

Query: 232 FVYNSLIRVY---CCAVNWED-AKGNTSAALEL-HEEFVNGNGELGVICHPDVLSYCSII 286
             Y  L+  +        WE  AK   S  L   H + ++   ++ +   PDV  Y  +I
Sbjct: 798 IAYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQI--EPDVPCYTVLI 855

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           +  CK   + +A+ELF +M  +G+ PD   Y++LI+GYC  G I  A  L   +  +G  
Sbjct: 856 DGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIE 915

Query: 347 PDTSSYNTLINSYSKIEKVE 366
           PD  +++ L  S  +  K++
Sbjct: 916 PDELTFSVLNQSSLRSRKIQ 935



 Score = 39.3 bits (90), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 24/205 (11%)

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
           +SR +  D VV +     +CL  R   A   F   +S G   D S+Y+ +I   S   + 
Sbjct: 178 RSRPLCSDSVVQTL----HCLKRRPAIAFAYFKDTQSIGFNHDFSTYSEMIQILSHSRQG 233

Query: 366 EEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
           +  +SL+ E++S         IL   +  R    T   L   V +CL+      + +++ 
Sbjct: 234 KMLVSLFSELVS-SSNASGPEILPLVDHHRRTCATPCSLSFMV-DCLIKACITCYDVQAT 291

Query: 426 WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE---------KAYDLLPDMEE------- 469
             LF  + R G  P+V T+ +++  +   G  E         K + L PD+         
Sbjct: 292 ICLFSGICRLGVVPSVWTWNLLLKFIAETGEYEMVLAAYNEMKCFQLTPDVYTFAIVTRS 351

Query: 470 --KIRECLKAIELLHKMAKRYVKPD 492
             + ++  +A+++  +M +  VKPD
Sbjct: 352 LFQAKKVDEALQVWAEMTEMGVKPD 376


>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
 gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 124/483 (25%), Positives = 220/483 (45%), Gaps = 86/483 (17%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGC--------- 162
           R+  +G+ P  ++ N L+N   +            R+ + VF+ D + +G          
Sbjct: 149 RMKRLGMQPTLLTCNTLLNALVRFPSSHSI-----RLSKAVFT-DFIKIGVKINTNSFNI 202

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           LI G CM+ +F EA  +  K   + C P+ I     Y +I+DGLCK G +N+ R L LDM
Sbjct: 203 LIHGSCMENRFGEAIRVLGKMRDYGCPPDNI----TYNTILDGLCKKGRLNEARDLLLDM 258

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNW-----------------EDA------------KGN 253
           K +G++P+   +N L+ V CC + W                  DA            +G 
Sbjct: 259 KNKGLFPNRTTFNILV-VGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGR 317

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
            + A+ L EE  N      +   PDV++Y ++IN   +    ++  +L  +M+ RG+ P+
Sbjct: 318 IAEAMRLREEMEN------LKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPN 371

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
            V Y+ ++  +   G++D+  K    +E  GC+PD  +YNTLI+ + K+ K++EA  L  
Sbjct: 372 SVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMD 431

Query: 374 EMISMGVRPDNSCIL-------------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           EM   G++ D+  +              EA +L  +     + +D   +  L+ G  K  
Sbjct: 432 EMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHE 491

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE----------- 469
           +   A  L+ ++      P+++TY  MI GLC  G   +A D L ++ E           
Sbjct: 492 KASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYN 551

Query: 470 -------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
                  +  +  KA +  +KM ++  KPD +T + L   L K+    + + L  +++S+
Sbjct: 552 TIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISK 611

Query: 523 NQE 525
            ++
Sbjct: 612 GKD 614



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 173/403 (42%), Gaps = 39/403 (9%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L +A      M      P   ++N ++     +      + L E +  + L PD V+ N 
Sbjct: 283 LKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNT 342

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N   +     + F  +  +  +   P+ VT   +++    +GK  E      K     
Sbjct: 343 LINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESG 402

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C    +P+++ Y ++I   CK G +++   L  +M  +G+  D    N+++R  C     
Sbjct: 403 C----LPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKL 458

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           ++A     +A      FV            D +SY ++I    K     +A  L+ +MK 
Sbjct: 459 DEAHDLLCSARR-RGYFV------------DEVSYGTLIIGYFKHEKASQALRLWDEMKE 505

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           + IIP ++ Y+S+I G C MG+ + A      +   G +PD  +YNT+I+ Y +  +VE+
Sbjct: 506 KEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEK 565

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           A   + +M+    +P                      D+   N L+ GLCK   L  A +
Sbjct: 566 AFQFHNKMVEKNFKP----------------------DVVTCNTLLCGLCKEGMLEKALK 603

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           LF      G + + V+Y  +I  LC E    +A+DLL +MEEK
Sbjct: 604 LFNTWISKGKDVDAVSYNTIILSLCKEKRFGEAFDLLEEMEEK 646



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 161/367 (43%), Gaps = 62/367 (16%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           ++   G LPD V+ N L++  CK+  + +AF  +  + RK    D VTL  ++R LC + 
Sbjct: 397 KMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRER 456

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
           K  EA  L         R     + + Y ++I G  K    ++   L+ +MK + I P  
Sbjct: 457 KLDEAHDLLCSAR----RRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSI 512

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
             YNS+I   C         G T+ A++  +E +    E G++  PD ++Y +II+  C+
Sbjct: 513 ITYNSMIAGLC-------QMGKTNQAIDKLDELL----ESGLV--PDEITYNTIIHGYCQ 559

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
           +  V+KA +    M  +   PDVV  ++L+ G C  G ++ A KLF +  S+G   D  S
Sbjct: 560 EGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVS 619

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNC 411
           YNT+I S  K ++  EA  L  EM    + PD  C                      +N 
Sbjct: 620 YNTIILSLCKEKRFGEAFDLLEEMEEKKLGPD--CY--------------------TYNA 657

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYG-----------------------PEPNVVTYTVMI 448
           ++ GL  + R++ A E   K+   G                       P PN + Y+  I
Sbjct: 658 ILGGLTDAGRMKDAEEFISKIAEKGKSENQFLELGKRQDARTSEIPQEPHPNAIAYSNKI 717

Query: 449 CGLCIEG 455
             LC +G
Sbjct: 718 NELCSQG 724



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 116/274 (42%), Gaps = 49/274 (17%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           + AL  ++ M   +  P + ++NS++  L         I   + L   GL+PD ++ N +
Sbjct: 494 SQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTI 553

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           ++ +C+   V  AF    +++ K F PDVVT   L+ GLC +G   +A  LF  +++   
Sbjct: 554 IHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWIS--- 610

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
                 + + Y +II  LCK+    +   L  +M+ + + PD + YN+++     A   +
Sbjct: 611 -KGKDVDAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKLGPDCYTYNAILGGLTDAGRMK 669

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
           DA           EEF++   E G                        K++  FL++  R
Sbjct: 670 DA-----------EEFISKIAEKG------------------------KSENQFLELGKR 694

Query: 309 GII----------PDVVVYSSLIDGYCLMGRIDD 332
                        P+ + YS+ I+  C  GR  D
Sbjct: 695 QDARTSEIPQEPHPNAIAYSNKINELCSQGRYKD 728


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 110/400 (27%), Positives = 192/400 (48%), Gaps = 58/400 (14%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           + PD  + N +++  C+   + ++   L ++L++  S +  T    IRGLC  G+  EA 
Sbjct: 111 VFPDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAV 170

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            L     A+     + P+V+ Y +++ GLCKD  V +       M  +G  PD F YN++
Sbjct: 171 ALVESMDAY-----IAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTI 225

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           I  YC     ++A      A+   + FV           PD ++YCS+IN LC +  V++
Sbjct: 226 IDGYCKRDMLQEATELLKDAI--FKGFV-----------PDRVTYCSLINGLCAEGDVER 272

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A ELF + +++ + PD+VVY+SL+ G C  G I  A ++   +  +GC PD  +YN +IN
Sbjct: 273 ALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVIN 332

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
              K+  + +A  +  + I  G  P                      D+  FN ++DG C
Sbjct: 333 GLCKMGNISDAAVVMNDAIVKGYLP----------------------DVFTFNTMIDGYC 370

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK------------------ 459
           K  +L SA +L +++  YG  P+ +TY  ++ GLC  G  ++                  
Sbjct: 371 KRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAI 430

Query: 460 AYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
            Y++L +   KI +  +A  ++ +M++  + PD I+ + L
Sbjct: 431 TYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTL 470



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 109/400 (27%), Positives = 188/400 (47%), Gaps = 30/400 (7%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
            P + ++N+L+  L              R+   G +PD  + N +++ +CK   + +A  
Sbjct: 181 APDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATE 240

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
            L   + K F PD VT   LI GLC +G    A  LF +  A D +    P+++ Y S++
Sbjct: 241 LLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLK----PDLVVYNSLV 296

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
            GLC+ G +     +  +M   G +PD + YN +I   C   N  D      AA+ +++ 
Sbjct: 297 KGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISD------AAVVMNDA 350

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
            V G         PDV ++ ++I+  CK + +D A +L   M   GI PD + Y+S+++G
Sbjct: 351 IVKGY-------LPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNG 403

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            C  G+  +  + F  +  +GC P+  +YN LI ++ KI ++EEA  +   M   G+ PD
Sbjct: 404 LCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPD 463

Query: 384 -------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
                        N  +  A  LF+ L    +      FN L+        ++ A ++F 
Sbjct: 464 TISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFG 523

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           ++   G +P++ TY V++ G C    +++AY  L +M  K
Sbjct: 524 EMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSK 563



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 118/433 (27%), Positives = 196/433 (45%), Gaps = 66/433 (15%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P  P++N+++ AL    Y+     +  R+ + G+ PD  +  + +  FC         VA
Sbjct: 8   PAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCI---TGRPHVA 64

Query: 145 LGRILRKVFSP--DVVTLG--CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200
           L R+LR +     DV  L    ++RGL   G   +A  LF + +    R +V P+V  + 
Sbjct: 65  L-RLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEML----RRDVFPDVATFN 119

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL 260
           +++  LC+ G + +   L   +  RG+  + F  N  IR  C     E+A     A +E 
Sbjct: 120 NVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEA----VALVES 175

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
            + ++           PDV++Y +++  LCKD  V +A +    M ++G IPD   Y+++
Sbjct: 176 MDAYIA----------PDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTI 225

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           IDGYC    + +A +L      +G +PD  +Y +LIN       VE AL L+ E  +  +
Sbjct: 226 IDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDL 285

Query: 381 RPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
           +P                      DL V+N LV GLC+   +  A ++  ++   G  P+
Sbjct: 286 KP----------------------DLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPD 323

Query: 441 VVTYTVMICGLCIEGGIEKAY---------DLLPD------MEEKIRECLK---AIELLH 482
           + TY ++I GLC  G I  A            LPD      M +   + LK   A++L+ 
Sbjct: 324 IWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVE 383

Query: 483 KMAKRYVKPDEIT 495
           +M    + PD IT
Sbjct: 384 RMWMYGIAPDAIT 396



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 162/359 (45%), Gaps = 52/359 (14%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N    E ++  AL  FN        P +  +NSL+  L  +   ++ + +   +   G  
Sbjct: 262 NGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCH 321

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD  + NI++N  CKM  +SDA V +   + K + PDV T   +I G C + K   A  L
Sbjct: 322 PDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQL 381

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             +   +     + P+ I Y S+++GLCK G   +V   F +M  +G  P+A  YN LI 
Sbjct: 382 VERMWMY----GIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIE 437

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK-- 297
            +C     E+A G     + + ++        G++  PD +S+ ++I+  C++  +D   
Sbjct: 438 NFCKINQLEEASG---VIVRMSQD--------GLV--PDTISFNTLIHGFCRNGDLDGAY 484

Query: 298 ---------------------------------AKELFLDMKSRGIIPDVVVYSSLIDGY 324
                                            A+++F +M S+G  PD+  Y  L+DG 
Sbjct: 485 LLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGS 544

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           C    +D A      + S+G +P  +++  ++NS +   +V EA+++   M+ MGV P+
Sbjct: 545 CKAANVDRAYVHLAEMVSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIHIMVRMGVVPE 603



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 93/206 (45%), Gaps = 14/206 (6%)

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
           C P   +Y +I+++L      D+A ++++ M S G+ PD   ++  I  +C+ GR   A 
Sbjct: 6   CPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVAL 65

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC-------- 386
           +L  S+   GC     +Y T++          +A  L+ EM+   V PD +         
Sbjct: 66  RLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLHAL 125

Query: 387 -----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
                I+E+  L   +      ++    N  + GLC+  RL  A  L + +  Y   P+V
Sbjct: 126 CQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDAY-IAPDV 184

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDM 467
           VTY  ++ GLC +  +++A   L  M
Sbjct: 185 VTYNTLMRGLCKDSKVQEAAQYLRRM 210



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 85/211 (40%), Gaps = 32/211 (15%)

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS---------CILE----A 390
           GC P   +YN ++++       ++A  +Y  M+S GV PD           CI      A
Sbjct: 5   GCPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVA 64

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
             L R+L     ++    +  +V GL        A  LF ++ R    P+V T+  ++  
Sbjct: 65  LRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLHA 124

Query: 451 LCIEGGIEKAYDLLPDMEEK------------IR------ECLKAIELLHKMAKRYVKPD 492
           LC +G I ++  LL  + ++            IR         +A+ L+  M   Y+ PD
Sbjct: 125 LCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESM-DAYIAPD 183

Query: 493 EITVSILEELLNKDENCHECMNLLPSFLSRN 523
            +T + L   L KD    E    L   +++ 
Sbjct: 184 VVTYNTLMRGLCKDSKVQEAAQYLRRMMNQG 214


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 139/529 (26%), Positives = 230/529 (43%), Gaps = 87/529 (16%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           SK   VE    L  F+ MI  + +P + + N +L  L  K      + +   +   G+ P
Sbjct: 175 SKKSMVE--QCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKP 232

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
             V+ N L++ +CK   V      L  + R+  +P+ VT   LI GL  +G+F +A GL 
Sbjct: 233 TIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLI 292

Query: 181 T-------KFVAFDCRPNVI------------------------PNVICYASIIDGLCKD 209
                   K  A+   P +                         P V  Y S I GLCK 
Sbjct: 293 GEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKL 352

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
           G ++       DM    + PD   YN+LI  YC         GN   A  L +E  +   
Sbjct: 353 GRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYC-------RLGNLMKAFLLFDELRS--- 402

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
              +   P +++Y ++++ LC+   ++ A++L ++M + GI PD+V Y+ L++G C MG 
Sbjct: 403 ---IYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGS 459

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------ 383
           +  A++ F  +  EG   D+ +Y T I    K+     A SL  EM++ G  PD      
Sbjct: 460 LSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNV 519

Query: 384 ---NSCIL----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
                C L    EA+EL + + +     D   +  ++    ++ RLR   E+F ++   G
Sbjct: 520 VVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKG 579

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAI 478
             P+VVTYTV+I G   +G +E+A+    +M+E                  K+R   +A 
Sbjct: 580 LTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAY 639

Query: 479 ELLHKMAKRYVKPDEITVSILEELLNKDENC-----HECMNLLPSFLSR 522
               +M ++ + P++ + +IL      +ENC      E ++L    L R
Sbjct: 640 NFFAEMVEKGIFPNKYSYTIL-----INENCNMGNWQEALSLYKQMLDR 683



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/439 (26%), Positives = 197/439 (44%), Gaps = 56/439 (12%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L +AL     M+    +P + ++NS +  L       + +     +    LLPD VS N 
Sbjct: 320 LAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNT 379

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+  +C++  +  AF+    +      P +VT   L+ GLC QG+   A  L  + +   
Sbjct: 380 LIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMI--- 436

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               + P+++ Y  +++G CK G ++  +  F +M   G+  D++ Y + I         
Sbjct: 437 -NEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIV-------G 488

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           E   G+TS A  L EE       L     PD++ Y  +++ LCK   +++A EL   M S
Sbjct: 489 ELKLGDTSRAFSLQEEM------LAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVS 542

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            G+IPD V Y+S+I  +   GR+   R++F  + S+G  P   +Y  LI+ ++   ++E 
Sbjct: 543 DGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLER 602

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           A   + EM   G+ P+                      +  +N L++GLCK  R+  A+ 
Sbjct: 603 AFIYFSEMQEKGILPN----------------------VITYNSLINGLCKVRRMDQAYN 640

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKR 487
            F ++   G  PN  +YT++I   C  G  ++A                 + L  +M  R
Sbjct: 641 FFAEMVEKGIFPNKYSYTILINENCNMGNWQEA-----------------LSLYKQMLDR 683

Query: 488 YVKPDEITVSILEELLNKD 506
            V+PD  T S L + L KD
Sbjct: 684 GVQPDSCTHSALLKQLGKD 702



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 145/339 (42%), Gaps = 52/339 (15%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L  A   F+ +  +   P + ++N+LL  L  +        L   +   G+ PD V+  I
Sbjct: 390 LMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTI 449

Query: 128 LMNCFCKMIGVS----------------DAFVALGRI-------------------LRKV 152
           L+N  CKM  +S                D++    RI                   L K 
Sbjct: 450 LVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKG 509

Query: 153 FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFV 212
           F PD++    ++ GLC  G   EAS L  K V+      VIP+ + Y SII    ++G +
Sbjct: 510 FPPDLIIYNVVVDGLCKLGNLEEASELLQKMVS----DGVIPDYVTYTSIIHAHLENGRL 565

Query: 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
            K R +F +M  +G+ P    Y  LI  +         KG    A     E      E G
Sbjct: 566 RKGREIFYEMLSKGLTPSVVTYTVLIHGHA-------GKGRLERAFIYFSEM----QEKG 614

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
           ++  P+V++Y S+IN LCK   +D+A   F +M  +GI P+   Y+ LI+  C MG   +
Sbjct: 615 IL--PNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQE 672

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           A  L+  +   G  PD+ +++ L+    K  K++    L
Sbjct: 673 ALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKLQAVRQL 711



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 43/212 (20%)

Query: 323 GYCLMGRIDDAR-KLFVSIESEGCIPDTSS---YNTLINSYSKIEKVEEALSLYGEMISM 378
            Y +M R+ +A     V +   GC+    S    + LI  YSK   VE+ LS++ +MI  
Sbjct: 134 AYWVMERVINANMHRIVDVLIGGCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKS 193

Query: 379 GVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
            + PD   +     + R L +                      +  A E+++ +  +G +
Sbjct: 194 RLSPD---VKNCNRILRILRDKDL-------------------MSKAVEVYRTMGEFGIK 231

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSI 498
           P +VTY  ++   C  G +++  DLL +M+                 +R   P+++T ++
Sbjct: 232 PTIVTYNTLLDSYCKGGKVQQGLDLLSEMQ-----------------RRGCAPNDVTYNV 274

Query: 499 LEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           L   L+K     +   L+   L    + S  T
Sbjct: 275 LINGLSKKGEFEQAKGLIGEMLKTGLKVSAYT 306


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 118/401 (29%), Positives = 185/401 (46%), Gaps = 54/401 (13%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + +FNS++  L           + + +   GL PD VS N L++ +CK+  + ++   
Sbjct: 79  PNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAV 138

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
              + ++   PDVVT   LI   C  G   +A  L  +      R N +     + ++ID
Sbjct: 139 FSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVT----FTALID 194

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           G CK GF++   +   +M+  GI P    YN+LI  YC         G    A EL  E 
Sbjct: 195 GFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYC-------KLGRMDLARELIREM 247

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
                       PDV++Y +II+  CK   +D A +L   M  +G++PD + YSSLI G 
Sbjct: 248 EAKR------VKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGL 301

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           C   R++DA +LF ++   G  PD  +Y TLI+ + K   VE+ALSL+ EMI  GV P  
Sbjct: 302 CEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLP-- 359

Query: 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
                               D+  ++ L++GL KS R + A  L  KL    P P+ + Y
Sbjct: 360 --------------------DVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKY 399

Query: 445 -TVMIC--------------GLCIEGGIEKAYDLLPDMEEK 470
             +M+C              G C++G +++A  +   M ++
Sbjct: 400 DALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDR 440



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 118/413 (28%), Positives = 195/413 (47%), Gaps = 46/413 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ P+  + NIL+   C    + +A   +G +     +P+ VT   L+   C  G+   A
Sbjct: 5   GVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGA 64

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             + +         N  PN++ + S+++GLCK G +   R +F +M   G+ PD   YN+
Sbjct: 65  ERVVSLMRE---EGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNT 121

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           L+  YC         G    +L +  E      + G++  PDV+++ S+I++ CK   ++
Sbjct: 122 LLSGYC-------KVGCLHESLAVFSEMT----QRGLV--PDVVTFTSLIHATCKAGNLE 168

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A  L   M+ RG+  + V +++LIDG+C  G +DDA      +   G  P    YN LI
Sbjct: 169 QAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALI 228

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD---NSCIL----------EAAELFRTLHNTKFE 403
           N Y K+ +++ A  L  EM +  V+PD    S I+           A +L + +      
Sbjct: 229 NGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVL 288

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D   ++ L+ GLC+  RL  A ELF+ + + G +P+  TYT +I G C EG +E     
Sbjct: 289 PDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVE----- 343

Query: 464 LPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                       KA+ L  +M ++ V PD +T S+L   L+K     E   LL
Sbjct: 344 ------------KALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLL 384



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 117/400 (29%), Positives = 198/400 (49%), Gaps = 24/400 (6%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+++L  F+ M      P + +F SL+ A          + L  ++   GL  + V+   
Sbjct: 132 LHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTA 191

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++ FCK   + DA +A+  + +    P VV    LI G C  G+   A  L  +  A  
Sbjct: 192 LIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEA-- 249

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               V P+V+ Y++II G CK G ++    L   M  +G+ PDA  Y+SLIR  C     
Sbjct: 250 --KRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLC----- 302

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           E+ + N   A EL E  +    +LGV   PD  +Y ++I+  CK+  V+KA  L  +M  
Sbjct: 303 EEKRLND--ACELFENML----QLGV--QPDEFTYTTLIDGHCKEGNVEKALSLHDEMIR 354

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           +G++PDVV YS LI+G     R  +A +L   +  E  +PD   Y+ L+   SK E  + 
Sbjct: 355 KGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAE-FKS 413

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
            ++L       G+      + EA ++++++ +  ++LD +V++ L+ G C+   +R A  
Sbjct: 414 VVALLKGFCMKGL------MKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALS 467

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
             K++ R G  PN  +   ++ GL  EG + +A + + D+
Sbjct: 468 FHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDL 507



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 178/361 (49%), Gaps = 49/361 (13%)

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
           R  V PNV  Y  ++  LC  G + +   +  DM+G G  P+A  YN+L+  +C A   +
Sbjct: 3   RHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELD 62

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
            A+   S   E       GN +      P+++++ S++N LCK   ++ A+++F +M   
Sbjct: 63  GAERVVSLMRE------EGNAK------PNLVTFNSMVNGLCKAGRMEGARKVFDEMVRE 110

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G+ PDVV Y++L+ GYC +G + ++  +F  +   G +PD  ++ +LI++  K   +E+A
Sbjct: 111 GLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQA 170

Query: 369 LSLYGEMISMGVRP---------DNSC---ILEAAEL-FRTLHNTKFELDLTVFNCLVDG 415
           ++L  +M   G+R          D  C    L+ A L    +     +  +  +N L++G
Sbjct: 171 VALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALING 230

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL---------LPD 466
            CK  R+  A EL +++     +P+VVTY+ +I G C  G ++ A+ L         LPD
Sbjct: 231 YCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPD 290

Query: 467 M------------EEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMN 514
                        E+++ +   A EL   M +  V+PDE T + L +   K+ N  + ++
Sbjct: 291 AITYSSLIRGLCEEKRLND---ACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALS 347

Query: 515 L 515
           L
Sbjct: 348 L 348



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 99/213 (46%), Gaps = 39/213 (18%)

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M   G+ P+V  Y+ L+   C  GR+++A  +   +   GC P+  +YNTL+ ++ +  +
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
           ++ A  +                     L R   N K   +L  FN +V+GLCK+ R+  
Sbjct: 61  LDGAERV-------------------VSLMREEGNAK--PNLVTFNSMVNGLCKAGRMEG 99

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE--------------- 469
           A ++F ++ R G  P+VV+Y  ++ G C  G + ++  +  +M +               
Sbjct: 100 ARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIH 159

Query: 470 ---KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
              K     +A+ L+ +M +R ++ +E+T + L
Sbjct: 160 ATCKAGNLEQAVALVAQMRERGLRMNEVTFTAL 192



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 110/286 (38%), Gaps = 37/286 (12%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  LNDA   F  M+ +   P   ++ +L+     +      + L + +   G+LPD V+
Sbjct: 304 EKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVT 363

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            ++L+N   K     +A   L ++  +   PD +    L+  LC                
Sbjct: 364 YSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALM--LC---------------- 405

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
              C      +V+   +++ G C  G + +   ++  M  R    D  VY+ LI  +C  
Sbjct: 406 ---CSKAEFKSVV---ALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHC-- 457

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                  GN   AL  H++ +           P+  S  S++  L ++ +V +A     D
Sbjct: 458 -----RGGNVRKALSFHKQMLRSG------FSPNSTSTISLVRGLFEEGMVVEADNAIQD 506

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           + +   + D     +LID     G +D    +   +  +G +P + 
Sbjct: 507 LLTCCPLADAEASKALIDLNRKEGNVDALIDVLCGMARDGLLPSSG 552


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 167/349 (47%), Gaps = 39/349 (11%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD ++   ++   CK   + DA   +  +  +   PD      ++ GLC + K  EA  L
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 66

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F K V    +  + PNV+ Y ++I+GLCK   +     LF +M G+G  P    YN+LI 
Sbjct: 67  FEKMV----KQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLID 122

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            +C        K +  AA ++ ++ V  N      C P+V++Y ++I+ L K   V  A 
Sbjct: 123 GFC-------KKKDLVAAKDVFDKMVRSN------CVPNVVTYTTLIDGLSKSGKVQAAA 169

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           E+   M  +G+ P+V  YS LIDG+C + R+D+A KL   + ++G  P   +YN L+NS 
Sbjct: 170 EVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSL 229

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            + +K+E+A                       +LFR +   +    +  +N L+  LC  
Sbjct: 230 CRADKLEDAF----------------------KLFRGMAQRRCHPTVVTYNTLLRALCHH 267

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
            +L  A  L+ ++   G  P+ +TY  +  GL   G + +A +L+  M+
Sbjct: 268 KQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMK 316



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 163/351 (46%), Gaps = 51/351 (14%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P+ + Y  I++ LCK   ++       +M  RGI PDAF+YN ++   C     E+A+  
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEAR-- 64

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
                 L E+ V          +P+V++Y ++IN LCK   ++ A ELF +M  +G +P 
Sbjct: 65  -----LLFEKMVKQR------INPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPT 113

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
            V Y++LIDG+C    +  A+ +F  +    C+P+  +Y TLI+  SK  KV+ A  +  
Sbjct: 114 EVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLD 173

Query: 374 EMISMGVRPD---NSCIL----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
            M+  GV P+    SC++          EA +L   +        +  +N L++ LC++ 
Sbjct: 174 GMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRAD 233

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIEL 480
           +L  A++LF+ + +    P VVTY  ++  LC    ++ A+ L  +M  K          
Sbjct: 234 KLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAK---------- 283

Query: 481 LHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLTR 531
                     PD IT   L   L +    HE   L+        E+ KLT+
Sbjct: 284 -------GCPPDAITYDTLAWGLTRAGKVHEAQELM--------EKMKLTK 319



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 158/348 (45%), Gaps = 39/348 (11%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P   ++  ++  L   K   + +   E + T G+ PD    N +++  C+   V +A + 
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 66

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
             +++++  +P+VVT   LI GLC   +   A  LF +          +P  + Y ++ID
Sbjct: 67  FEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAG----KGYVPTEVSYNTLID 122

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           G CK   +   + +F  M      P+   Y +LI       +     G   AA E+    
Sbjct: 123 GFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLI-------DGLSKSGKVQAAAEV---- 171

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           ++G  + GV   P+V +Y  +I+  CK   VD+A +L   M ++GI P VV Y+ L++  
Sbjct: 172 LDGMVKKGVT--PNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSL 229

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           C   +++DA KLF  +    C P   +YNTL+ +    ++++ A  LY EMI+ G  P  
Sbjct: 230 CRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPP-- 287

Query: 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
                               D   ++ L  GL ++ ++  A EL +K+
Sbjct: 288 --------------------DAITYDTLAWGLTRAGKVHEAQELMEKM 315



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 143/309 (46%), Gaps = 17/309 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            ++DAL     M      P    +N +L  L  ++       L E++    + P+ V+ N
Sbjct: 24  RIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYN 83

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+N  CK   +  A+     +  K + P  V+   LI G C +     A  +F K V  
Sbjct: 84  TLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRS 143

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           +C    +PNV+ Y ++IDGL K G V     +   M  +G+ P+   Y+ LI  +C    
Sbjct: 144 NC----VPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRR 199

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            ++A        +L E+ V           P V++Y  ++NSLC+   ++ A +LF  M 
Sbjct: 200 VDEAH-------KLLEQMVTQG------IAPTVVTYNILLNSLCRADKLEDAFKLFRGMA 246

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            R   P VV Y++L+   C   ++D A +L+  + ++GC PD  +Y+TL    ++  KV 
Sbjct: 247 QRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVH 306

Query: 367 EALSLYGEM 375
           EA  L  +M
Sbjct: 307 EAQELMEKM 315



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 9/185 (4%)

Query: 39  LHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALA 98
           + SN V  V   T L+  LS   KSG+V+   A    + M+    TP + +++ L+    
Sbjct: 141 VRSNCVPNVVTYTTLIDGLS---KSGKVQA--AAEVLDGMVKKGVTPNVATYSCLIDGFC 195

Query: 99  GKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVV 158
             +       L E++ T G+ P  V+ NIL+N  C+   + DAF     + ++   P VV
Sbjct: 196 KVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVV 255

Query: 159 TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVL 218
           T   L+R LC   +   A  L+ + +A  C     P+ I Y ++  GL + G V++ + L
Sbjct: 256 TYNTLLRALCHHKQLDGAHRLYAEMIAKGCP----PDAITYDTLAWGLTRAGKVHEAQEL 311

Query: 219 FLDMK 223
              MK
Sbjct: 312 MEKMK 316


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 129/527 (24%), Positives = 222/527 (42%), Gaps = 75/527 (14%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            + DAL   + M      P  P ++ +L A      + + + + E L+  G   D  + N
Sbjct: 137 RIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCN 196

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +++N  C    V +A   L  +      PDVV+   +++GLCM  ++     L  + V  
Sbjct: 197 LVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRM 256

Query: 187 DCRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKV 215
            C PN++                               P++  YA+IIDG+CK+G +   
Sbjct: 257 ACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVA 316

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
             +   M   G+ P+   YN+L++  C A  WE+ +       EL  E  + +      C
Sbjct: 317 HEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETE-------ELLAEMFDKD------C 363

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
             D +++  +++  C++ LVD+  EL   M  RG +PDV+ Y+++I+G+C  G ID+A  
Sbjct: 364 PLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVM 423

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG--VRP----------- 382
           L  S+ + GC P+T SY  ++      E+  +A  L  +MI  G  + P           
Sbjct: 424 LLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLC 483

Query: 383 DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
               + +A EL + +       DL  ++ ++DGL K+ +   A EL   +   G  PN +
Sbjct: 484 KKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTI 543

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKM 484
            Y+ +   L  EG I K   +  ++++                  K  E  +AIE L  M
Sbjct: 544 IYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYM 603

Query: 485 AKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLTR 531
                 P+E T +IL   L  +    E   +L    S+      L +
Sbjct: 604 VSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKGALRKHLMK 650



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 146/327 (44%), Gaps = 32/327 (9%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDG-FVN 213
           P+  T   ++R LC +G+  +A  +  +     C P  IP +  Y  I++  C+ G F +
Sbjct: 120 PNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAP--IPPM--YHVILEAACRGGGFRS 175

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
            VRVL  D+  RG   D    N ++   C        +G+   AL L  +  +       
Sbjct: 176 AVRVLE-DLHARGCALDVGNCNLVLNAIC-------DQGSVDEALHLLRDLPSFG----- 222

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
            C PDV+SY +++  LC        +EL  +M      P++V +++LI   C  G  +  
Sbjct: 223 -CEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERV 281

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI------ 387
            ++   +   GC PD   Y T+I+   K   +E A  +   M S G++P+  C       
Sbjct: 282 HEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKG 341

Query: 388 -------LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
                   E  EL   + +    LD   FN LVD  C++  +    EL +++   G  P+
Sbjct: 342 LCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPD 401

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDM 467
           V+TYT +I G C EG I++A  LL  M
Sbjct: 402 VITYTTVINGFCKEGLIDEAVMLLKSM 428



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 159/382 (41%), Gaps = 70/382 (18%)

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           ++ G C  G+   A  L            V PN   Y  ++  LC  G +     +  +M
Sbjct: 96  MVAGYCRAGQLESARRLAAAV-------PVPPNAYTYFPVVRALCARGRIADALAVLDEM 148

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
             RG  P   +Y+ ++   C         G  SA   L +    G       C  DV + 
Sbjct: 149 PRRGCAPIPPMYHVILEAAC------RGGGFRSAVRVLEDLHARG-------CALDVGNC 195

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
             ++N++C    VD+A  L  D+ S G  PDVV Y++++ G C+  R    ++L   +  
Sbjct: 196 NLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVR 255

Query: 343 EGCIPDTSSYNTLINSYSK---IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN 399
             C P+  ++NTLI+   +    E+V E L+   +M+  G  P                 
Sbjct: 256 MACPPNIVTFNTLISYLCRNGLFERVHEVLA---QMVEHGCTP----------------- 295

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
                D+ ++  ++DG+CK   L  A E+  ++P YG +PNVV Y  ++ GLC     E+
Sbjct: 296 -----DIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEE 350

Query: 460 AYDLLPDMEEKIRECL--------------------KAIELLHKMAKRYVKPDEITVSIL 499
             +LL +M +K  +C                     + IELL +M +R   PD IT + +
Sbjct: 351 TEELLAEMFDK--DCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTV 408

Query: 500 EELLNKDENCHECMNLLPSFLS 521
                K+    E + LL S  +
Sbjct: 409 INGFCKEGLIDEAVMLLKSMTA 430



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 115/286 (40%), Gaps = 52/286 (18%)

Query: 234 YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDV 293
           YN+++  YC A   E A+   +A                V   P+  +Y  ++ +LC   
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAA----------------VPVPPNAYTYFPVVRALCARG 136

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353
            +  A  +  +M  RG  P   +Y  +++  C  G    A ++   + + GC  D  + N
Sbjct: 137 RIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCN 196

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLV 413
            ++N+      V+EAL L  ++ S G  PD                      +  +N ++
Sbjct: 197 LVLNAICDQGSVDEALHLLRDLPSFGCEPD----------------------VVSYNAVL 234

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
            GLC + R     EL +++ R    PN+VT+  +I  LC  G  E+ +++L  M E    
Sbjct: 235 KGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVE--HG 292

Query: 474 CLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519
           C   I +   +     K   + V+            HE +N +PS+
Sbjct: 293 CTPDIRMYATIIDGICKEGHLEVA------------HEILNRMPSY 326


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 123/408 (30%), Positives = 193/408 (47%), Gaps = 48/408 (11%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIGLL 119
           K G+VE  +AL   + M    P P + ++NS++ AL  AGK      +  +E L T+   
Sbjct: 216 KDGDVE--EALEILDGMKLAGPVPDVITYNSIIHALCVAGK-----VVEAAEILKTMSCS 268

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V+ N L++ FCK   +  A   L  + R+   PDV+T   L+ GLC  G+   A  L
Sbjct: 269 PDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYL 328

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             + V    R   IP+VI Y S++DGLCK G + +   L  +M  RG      +Y+SL+ 
Sbjct: 329 LEEIV----RQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVS 384

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            YC A       GN   A E+  E V+ N        P + +Y  ++  L KD  + KA 
Sbjct: 385 GYCRA-------GNVHKAREILAEMVSIN------MVPPLFTYNIVLGGLIKDGSISKAV 431

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            L  D+ +RG +PDVV Y++LIDG C   R+ +A  L   + S GC P+  +  +++   
Sbjct: 432 SLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGL 491

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            ++ +V++A SL                    E+ R  H      ++ V+  L+DGLCKS
Sbjct: 492 CRVGRVDDAWSL------------------VVEMSRKRHAP----NVVVYTSLIDGLCKS 529

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            R+  A  +   +   G   +   Y  +I  +   G + +A  +  +M
Sbjct: 530 DRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAMAMYDEM 577



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 183/389 (47%), Gaps = 42/389 (10%)

Query: 82  QPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDA 141
           +  P + ++N+L+ A              E++   G+ PD ++ NIL++  CK   V +A
Sbjct: 164 KSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEA 223

Query: 142 FVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYAS 201
              L  +      PDV+T   +I  LC+ GK  EA+ +        C P+++     + +
Sbjct: 224 LEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILK---TMSCSPDLVT----FNT 276

Query: 202 IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261
           ++DG CK G + +   +  +M    I PD   Y  L+   C         G    A  L 
Sbjct: 277 LLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRV-------GQVQVAFYLL 329

Query: 262 EEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
           EE V      G I  PDV++Y S+++ LCK   +++A +L  +M  RG    VV+YSSL+
Sbjct: 330 EEIV----RQGYI--PDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLV 383

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
            GYC  G +  AR++   + S   +P   +YN ++    K   + +A+SL  ++++ G  
Sbjct: 384 SGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYV 443

Query: 382 PDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
           P                      D+  +N L+DGLCK+ R+R A +L  ++   G  PN 
Sbjct: 444 P----------------------DVVTYNTLIDGLCKANRVREACDLADEMASRGCFPND 481

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           VT   ++ GLC  G ++ A+ L+ +M  K
Sbjct: 482 VTLGSVVFGLCRVGRVDDAWSLVVEMSRK 510



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 129/487 (26%), Positives = 208/487 (42%), Gaps = 54/487 (11%)

Query: 71  ALCFFNYMIHMQPTPF-MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           A+ FF++          + S+N LL  L    ++     + + L   G  P+ V+  IL+
Sbjct: 10  AIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILI 69

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
              CK      A   L  +     +PDV     LI GL   G   +A  LF    +    
Sbjct: 70  RGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMES---- 125

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM--KGRGIYPDAFVYNSLIRVYCCAVNW 247
             V P ++ Y ++I GLCK G + K R L  +M  KG    PD   YN+LI  +  A   
Sbjct: 126 SRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRI 185

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
            +A            E +   G      +PDVL+   +++ +CKD  V++A E+   MK 
Sbjct: 186 REACA--------FREKMKAAG-----INPDVLTCNILVSGICKDGDVEEALEILDGMKL 232

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            G +PDV+ Y+S+I   C+ G++ +A ++   +++  C PD  ++NTL++ + K   +  
Sbjct: 233 AGPVPDVITYNSIIHALCVAGKVVEAAEI---LKTMSCSPDLVTFNTLLDGFCKAGMLPR 289

Query: 368 ALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           AL +  EM    + PD                +  A  L   +    +  D+  +  LVD
Sbjct: 290 ALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVD 349

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE----- 469
           GLCKS  +  A +L K++   G    VV Y+ ++ G C  G + KA ++L +M       
Sbjct: 350 GLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVP 409

Query: 470 -------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                        K     KA+ L+  +  R   PD +T + L + L K     E  +L 
Sbjct: 410 PLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLA 469

Query: 517 PSFLSRN 523
               SR 
Sbjct: 470 DEMASRG 476



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 135/335 (40%), Gaps = 67/335 (20%)

Query: 81  MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSD 140
           M  +P + +FN+LL            + + E +    +LPD ++  IL+N  C++  V  
Sbjct: 265 MSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQV 324

Query: 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP---------- 190
           AF  L  I+R+ + PDV+    L+ GLC  G+  EA  L  +     CR           
Sbjct: 325 AFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVS 384

Query: 191 ---------------------NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYP 229
                                N++P +  Y  ++ GL KDG ++K   L  D+  RG  P
Sbjct: 385 GYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVP 444

Query: 230 DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN-----GNGELGVICH-------- 276
           D   YN+LI   C A            A +L +E  +      +  LG +          
Sbjct: 445 DVVTYNTLIDGLCKA-------NRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRV 497

Query: 277 ----------------PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
                           P+V+ Y S+I+ LCK   +D A  +   M+ +G+  D   Y  L
Sbjct: 498 DDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKL 557

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           I      GR+ +A  ++  + + G +PD S+  TL
Sbjct: 558 IVSMSHGGRVAEAMAMYDEMVARGFLPDGSTSKTL 592



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 109/225 (48%), Gaps = 16/225 (7%)

Query: 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS 318
           +L  +F +  GE     H DV SY  +++ L K     +  +++ D+   G  P++V + 
Sbjct: 8   DLAIQFFDWAGEQDGYKH-DVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFK 66

Query: 319 SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
            LI G C  G+   A +   +++     PD   +N LI+   K    ++A+ L+  M S 
Sbjct: 67  ILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESS 126

Query: 379 GVRPD----NSCI--------LEAA-ELFRTL--HNTKFELDLTVFNCLVDGLCKSWRLR 423
            V+P+    N+ I        LE A EL   +     K   D+  +N L++   ++ R+R
Sbjct: 127 RVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIR 186

Query: 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
            A    +K+   G  P+V+T  +++ G+C +G +E+A ++L  M+
Sbjct: 187 EACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMK 231


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 108/378 (28%), Positives = 191/378 (50%), Gaps = 32/378 (8%)

Query: 107 ICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFS--PDVVTLGCLI 164
           + L E +   G  PD  + ++L+N  CK   + +A   L  + R + +      +   L+
Sbjct: 69  LSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSCFSYNSLL 128

Query: 165 RGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224
             LC   K  +A  +F+  V+     +V+P+V+ Y+ +IDG CK   + +   L+  M  
Sbjct: 129 NSLCKAKKVHQAFAIFSTMVS---ERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMID 185

Query: 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCS 284
               P+   YN+ +       N    KG  + A  ++EE ++        C PDV++Y +
Sbjct: 186 LNCVPNVTTYNAFL-------NGLMRKGRIADAQGVYEEMISAG------CSPDVITYST 232

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           +I+        D+A ELF  M SRG  P+ V Y+ L+ G C   + D+A +LF  +   G
Sbjct: 233 LIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERG 292

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCIL----------EAA 391
           C PD  +Y TL+  +  + K+E+A+ ++ EM+S G  PD    +C+L          EA 
Sbjct: 293 CDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAR 352

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR-YGPEPNVVTYTVMICG 450
           +LF+ + + + + D    N ++DGL K+ RL  A E+F+++ + +G  P++VTY  +I G
Sbjct: 353 QLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFG 412

Query: 451 LCIEGGIEKAYDLLPDME 468
           LC E  + +A  +  +++
Sbjct: 413 LCGEQRLSEAMKVFKEID 430



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 104/361 (28%), Positives = 179/361 (49%), Gaps = 39/361 (10%)

Query: 89  SFNSLLGAL-AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGR 147
           S+NSLL +L   KK +  F   S  ++   ++PD VS +IL++ FCK+  +  A     +
Sbjct: 123 SYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQ 182

Query: 148 ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207
           ++     P+V T    + GL  +G+  +A G++ + ++  C P+VI     Y+++I G  
Sbjct: 183 MIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVIT----YSTLIHGFS 238

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
                ++   LF  M  RG  P+A  YN L+   C        +     A EL  + V  
Sbjct: 239 LARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLC-------KESKPDEAHELFRKMV-- 289

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
             E G  C PD ++Y +++   C    +++A E+F +M S+G  PDVV Y+ L+ G+   
Sbjct: 290 --ERG--CDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRA 345

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
           G+  +AR+LF  + S  C PDT S+N +I+  SK +++++A+ ++  M       D+ C 
Sbjct: 346 GKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERM-----EQDHGC- 399

Query: 388 LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
                            DL  +N L+ GLC   RL  A ++FK++ R    P+   + V+
Sbjct: 400 ---------------SPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVL 444

Query: 448 I 448
           +
Sbjct: 445 L 445



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/380 (30%), Positives = 175/380 (46%), Gaps = 44/380 (11%)

Query: 158 VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRV 217
           V     + GLC  GK  +A                  +  C+ S+I  LCK G V+    
Sbjct: 12  VAWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCH-SVIQELCKAGRVDSALS 70

Query: 218 LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277
           L   M  RG  PD   ++ LI   C A   ++A           +EF+ G          
Sbjct: 71  LLETMIKRGYCPDMATHSMLINELCKADKIQEA-----------QEFLQGMNRTISTRAS 119

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKS-RGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
              SY S++NSLCK   V +A  +F  M S R ++PDVV YS LIDG+C +  +  A KL
Sbjct: 120 SCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKL 179

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCIL----- 388
           +  +    C+P+ ++YN  +N   +  ++ +A  +Y EMIS G  PD    S ++     
Sbjct: 180 YKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSL 239

Query: 389 -----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                +A ELF  + +     +   +NCL+ GLCK  +   A ELF+K+   G +P+ VT
Sbjct: 240 ARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVT 299

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEKIRE-------CL-----------KAIELLHKMA 485
           YT ++ G C  G IE+A ++  +M  K  +       CL           +A +L   M 
Sbjct: 300 YTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMV 359

Query: 486 KRYVKPDEITVSILEELLNK 505
            R  KPD ++ +I+ + L+K
Sbjct: 360 SRECKPDTVSHNIMIDGLSK 379



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 136/293 (46%), Gaps = 18/293 (6%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           EL  A   +  MI +   P + ++N+ L  L  K    +   + E + + G  PD ++ +
Sbjct: 172 ELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYS 231

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ F        A      ++ +   P+ VT  CL+ GLC + K  EA  LF K V  
Sbjct: 232 TLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVER 291

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C P+ +     Y +++ G C  G + +   +F +M  +G  PD   YN L++ +  A  
Sbjct: 292 GCDPDKVT----YTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRA-- 345

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM- 305
                G    A +L +  V+        C PD +S+  +I+ L K   +D A E+F  M 
Sbjct: 346 -----GKPGEARQLFQVMVSRE------CKPDTVSHNIMIDGLSKAKRLDDAVEVFERME 394

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
           +  G  PD+V Y+SLI G C   R+ +A K+F  I+     PD  ++N L+ +
Sbjct: 395 QDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEA 447


>gi|222616383|gb|EEE52515.1| hypothetical protein OsJ_34721 [Oryza sativa Japonica Group]
          Length = 820

 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 125/435 (28%), Positives = 205/435 (47%), Gaps = 42/435 (9%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +N+A+   N M +   TP    +  L+     K    N   + E +    + PD V+ NI
Sbjct: 415 MNEAVKLLNEMKYGGLTPDKIHYTCLISGYCLKGEMQNAQQVFEEMLKANIEPDIVTYNI 474

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L + FCK   V + F  L R+  +   P+ +T G  I G C  G  +EA  LF       
Sbjct: 475 LASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRGGNLSEAEVLFNVV---- 530

Query: 188 CRPNVIPNV-ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                I ++ + Y+S++ G    G+ +   +LF+ +  +G   D F  + LI   C   N
Sbjct: 531 -EEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLINDLCRVGN 589

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            + A       LE H+              PDV+SY  +I+  C++  +DKA   F DM 
Sbjct: 590 VQGASNVCKIMLE-HDVV------------PDVISYSKLISIYCQNGDMDKAHLWFHDMV 636

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            RG+  DV+VY+ L++GYC  GR+ +A +LFV + + G  PD  +Y  L++ + K    +
Sbjct: 637 QRGLSVDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQ 696

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
               +  E  S  +R +++      +L  ++ + + E D+  +  L+DG CK+  L  A 
Sbjct: 697 GWEGIAKERRSFLLRANHN------KLLSSMKDMQIEPDVPCYTVLIDGKCKAEYLVEAR 750

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAK 486
           ELF ++ + G  P+   YT +I G C +G I KA DLL +M +K                
Sbjct: 751 ELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDK---------------- 794

Query: 487 RYVKPDEITVSILEE 501
             ++PDE+T S+L +
Sbjct: 795 -GIEPDELTFSVLNQ 808



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 171/404 (42%), Gaps = 39/404 (9%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++   +C F+ +  +   P + ++N LL  +A    Y   +     +    L PD  +  
Sbjct: 169 DVQATICLFSGICRLGVVPSVWTWNLLLKFIAETGEYEMVLAAYNEMKCFQLTPDVYTFA 228

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           I+     +   V +A      +      PD       + GLC  GK+  A  +  +    
Sbjct: 229 IVTRSLFQAKKVDEALQVWAEMTEMGVKPDARGYSSFLIGLCDCGKYDLAYVILQEIN-- 286

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             R  V    + Y  ++DGLCK+  +++   L  +   +G  PD + Y+ LIR YC    
Sbjct: 287 --REKVPVEAMAYNMVMDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIRSYC---- 340

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                GN   A++ +E  V+   E    CH  ++SY  ++    K  +  +A   FL  K
Sbjct: 341 ---KMGNLINAVDHYEAMVSHGIETN--CH--IVSY--LLQCFRKLGMTSEAIAYFLKFK 391

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
             G+  D V+Y+  +D YC  G +++A KL   ++  G  PD   Y  LI+ Y    +++
Sbjct: 392 DSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKYGGLTPDKIHYTCLISGYCLKGEMQ 451

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
            A  ++ EM+   + P                      D+  +N L  G CKS  +   +
Sbjct: 452 NAQQVFEEMLKANIEP----------------------DIVTYNILASGFCKSGLVMEVF 489

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           +L  ++   G EPN +TY + I G C  G + +A  L   +EEK
Sbjct: 490 DLLDRMADQGLEPNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEK 533



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 120/260 (46%), Gaps = 11/260 (4%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           R+   G L D  S + L+N  C++  V  A      +L     PDV++   LI   C  G
Sbjct: 564 RVARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHDVVPDVISYSKLISIYCQNG 623

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
              +A   F   V    +  +  +VI Y  +++G CK G + +   LF+ M   GI PD 
Sbjct: 624 DMDKAHLWFHDMV----QRGLSVDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDV 679

Query: 232 FVYNSLIRVY---CCAVNWED-AKGNTSAALEL-HEEFVNGNGELGVICHPDVLSYCSII 286
             Y  L+  +        WE  AK   S  L   H + ++   ++ +   PDV  Y  +I
Sbjct: 680 IAYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQI--EPDVPCYTVLI 737

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           +  CK   + +A+ELF +M  +G+ PD   Y++LI+GYC  G I  A  L   +  +G  
Sbjct: 738 DGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIE 797

Query: 347 PDTSSYNTLINSYSKIEKVE 366
           PD  +++ L  S  +  K++
Sbjct: 798 PDELTFSVLNQSSLRSRKIQ 817



 Score = 38.5 bits (88), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 24/205 (11%)

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
           +SR +  D VV +     +CL  R   A   F   +S G   D S+Y+ +I   S   + 
Sbjct: 60  RSRPLCSDSVVQTL----HCLKRRPAIAFAYFKDTQSIGFNHDFSTYSEMIQILSHSRQG 115

Query: 366 EEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
           +  +SL+ E++S         IL   +  R    T   L   V +CL+      + +++ 
Sbjct: 116 KMLVSLFSELVS-SSNASGPEILPLVDHHRRTCATPCSLSFMV-DCLIKACITCYDVQAT 173

Query: 426 WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE---------KAYDLLPDMEE------- 469
             LF  + R G  P+V T+ +++  +   G  E         K + L PD+         
Sbjct: 174 ICLFSGICRLGVVPSVWTWNLLLKFIAETGEYEMVLAAYNEMKCFQLTPDVYTFAIVTRS 233

Query: 470 --KIRECLKAIELLHKMAKRYVKPD 492
             + ++  +A+++  +M +  VKPD
Sbjct: 234 LFQAKKVDEALQVWAEMTEMGVKPD 258


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 167/349 (47%), Gaps = 39/349 (11%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD ++   ++   CK   + DA   +  +  +   PD      ++ GLC + K  EA  L
Sbjct: 112 PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 171

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F K V    +  + PNV+ Y ++I+GLCK   +     LF +M G+G  P    YN+LI 
Sbjct: 172 FEKMV----KQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLID 227

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            +C        K +  AA ++ ++ V  N      C P+V++Y ++I+ L K   V  A 
Sbjct: 228 GFC-------KKKDLVAAKDVFDKMVRSN------CVPNVVTYTTLIDGLSKSGKVQAAA 274

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           E+   M  +G+ P+V  YS LIDG+C + R+D+A KL   + ++G  P   +YN L+NS 
Sbjct: 275 EVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSL 334

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            + +K+E+A                       +LFR +   +    +  +N L+  LC  
Sbjct: 335 CRADKLEDAF----------------------KLFRGMAQRRCHPTVVTYNTLLRALCHH 372

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
            +L  A  L+ ++   G  P+ +TY  +  GL   G + +A +L+  M+
Sbjct: 373 KQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMK 421



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 115/419 (27%), Positives = 190/419 (45%), Gaps = 56/419 (13%)

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
            IL++C CK+    +A+  L  +  K F    +    +I  LC   +  EA  L  K   
Sbjct: 49  GILISCLCKVGNFDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMAR 108

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
           +       P+ + Y  I++ LCK   ++       +M  RGI PDAF+YN ++   C   
Sbjct: 109 Y-----APPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEE 163

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
             E+A+        L E+ V          +P+V++Y ++IN LCK   ++ A ELF +M
Sbjct: 164 KVEEAR-------LLFEKMVKQR------INPNVVTYNTLINGLCKAWRIETAYELFKEM 210

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
             +G +P  V Y++LIDG+C    +  A+ +F  +    C+P+  +Y TLI+  SK  KV
Sbjct: 211 AGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKV 270

Query: 366 EEALSLYGEMISMGVRPD---NSCIL----------EAAELFRTLHNTKFELDLTVFNCL 412
           + A  +   M+  GV P+    SC++          EA +L   +        +  +N L
Sbjct: 271 QAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNIL 330

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIR 472
           ++ LC++ +L  A++LF+ + +    P VVTY  ++  LC    ++ A+ L  +M  K  
Sbjct: 331 LNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAK-- 388

Query: 473 ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLTR 531
            C                PD IT   L   L +    HE   L+        E+ KLT+
Sbjct: 389 GC---------------PPDAITYDTLAWGLTRAGKVHEAQELM--------EKMKLTK 424



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 158/348 (45%), Gaps = 39/348 (11%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P   ++  ++  L   K   + +   E + T G+ PD    N +++  C+   V +A + 
Sbjct: 112 PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 171

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
             +++++  +P+VVT   LI GLC   +   A  LF +          +P  + Y ++ID
Sbjct: 172 FEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAG----KGYVPTEVSYNTLID 227

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           G CK   +   + +F  M      P+   Y +LI       +     G   AA E+    
Sbjct: 228 GFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLI-------DGLSKSGKVQAAAEV---- 276

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           ++G  + GV   P+V +Y  +I+  CK   VD+A +L   M ++GI P VV Y+ L++  
Sbjct: 277 LDGMVKKGVT--PNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSL 334

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           C   +++DA KLF  +    C P   +YNTL+ +    ++++ A  LY EMI+ G  P  
Sbjct: 335 CRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPP-- 392

Query: 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
                               D   ++ L  GL ++ ++  A EL +K+
Sbjct: 393 --------------------DAITYDTLAWGLTRAGKVHEAQELMEKM 420



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 162/395 (41%), Gaps = 63/395 (15%)

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV--AFDCRPNVIPNVICYASIIDGL 206
           LR+V  P   T   +  G    G+  +   ++   V   +  R +       Y  +I  L
Sbjct: 3   LRRVI-PGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRAS------GYGILISCL 55

Query: 207 CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266
           CK G  ++   L   M+ +     A  Y+++I       NW         A EL E+   
Sbjct: 56  CKVGNFDEAYKLLHTMRLKRFKRKAIAYSTII-------NWLCKLNRVEEARELIEKMAR 108

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
                     PD L+Y  I+  LCK   +D A     +M +RGI PD  +Y+ ++ G C 
Sbjct: 109 -------YAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQ 161

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC 386
             ++++AR LF  +  +   P+  +YNTLIN   K  ++E A  L+ EM   G  P    
Sbjct: 162 EEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTE-- 219

Query: 387 ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTV 446
                                 +N L+DG CK   L +A ++F K+ R    PNVVTYT 
Sbjct: 220 --------------------VSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTT 259

Query: 447 MICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRY 488
           +I GL   G ++ A ++L  M +                  K+R   +A +LL +M  + 
Sbjct: 260 LIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQG 319

Query: 489 VKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
           + P  +T +IL   L + +   +   L      R 
Sbjct: 320 IAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRR 354



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 143/309 (46%), Gaps = 17/309 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            ++DAL     M      P    +N +L  L  ++       L E++    + P+ V+ N
Sbjct: 129 RIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYN 188

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+N  CK   +  A+     +  K + P  V+   LI G C +     A  +F K V  
Sbjct: 189 TLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRS 248

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           +C    +PNV+ Y ++IDGL K G V     +   M  +G+ P+   Y+ LI  +C    
Sbjct: 249 NC----VPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRR 304

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            ++A        +L E+ V           P V++Y  ++NSLC+   ++ A +LF  M 
Sbjct: 305 VDEAH-------KLLEQMVTQG------IAPTVVTYNILLNSLCRADKLEDAFKLFRGMA 351

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            R   P VV Y++L+   C   ++D A +L+  + ++GC PD  +Y+TL    ++  KV 
Sbjct: 352 QRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVH 411

Query: 367 EALSLYGEM 375
           EA  L  +M
Sbjct: 412 EAQELMEKM 420



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 9/185 (4%)

Query: 39  LHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALA 98
           + SN V  V   T L+  LS   KSG+V+   A    + M+    TP + +++ L+    
Sbjct: 246 VRSNCVPNVVTYTTLIDGLS---KSGKVQA--AAEVLDGMVKKGVTPNVATYSCLIDGFC 300

Query: 99  GKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVV 158
             +       L E++ T G+ P  V+ NIL+N  C+   + DAF     + ++   P VV
Sbjct: 301 KVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVV 360

Query: 159 TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVL 218
           T   L+R LC   +   A  L+ + +A  C     P+ I Y ++  GL + G V++ + L
Sbjct: 361 TYNTLLRALCHHKQLDGAHRLYAEMIAKGCP----PDAITYDTLAWGLTRAGKVHEAQEL 416

Query: 219 FLDMK 223
              MK
Sbjct: 417 MEKMK 421



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/284 (21%), Positives = 112/284 (39%), Gaps = 65/284 (22%)

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS-------------- 350
           M  R +IP    ++++ DG+   GR++  ++++  +   G     S              
Sbjct: 1   MALRRVIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGN 60

Query: 351 ---------------------SYNTLINSYSKIEKVEEALSLYGEM--------ISMGVR 381
                                +Y+T+IN   K+ +VEEA  L  +M        ++ G  
Sbjct: 61  FDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAPPDALTYGPI 120

Query: 382 PDNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
            +  C    I +A      +     + D  ++N ++ GLC+  ++  A  LF+K+ +   
Sbjct: 121 VERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRI 180

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIE 479
            PNVVTY  +I GLC    IE AY+L  +M                    K ++ + A +
Sbjct: 181 NPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKD 240

Query: 480 LLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
           +  KM +    P+ +T + L + L+K         +L   + + 
Sbjct: 241 VFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKG 284


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 203/429 (47%), Gaps = 52/429 (12%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           R    G      S N L++   K   + D       ++++    ++ T    I GLC  G
Sbjct: 155 RAKDYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAG 214

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV---RVLFLDMKGRGIY 228
           K  +A        A+     + PNV+ Y +++DG CK G   K+        +M    I 
Sbjct: 215 KLNKAEDAIEDMKAW----GISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKIC 270

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           P+   +N+LI  +C          N +AA +  EE             P++++Y S+IN 
Sbjct: 271 PNEVTFNTLIDGFC-------KDENVAAAKKAFEEMQKQG------LKPNIVTYNSLING 317

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           LC +  +++A +L+  M   G+ P++V Y++LI+G+C    + +A K+F  +  +  +P+
Sbjct: 318 LCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPN 377

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS---CIL----------EAAELFR 395
             ++NT+I++Y K   +EE  SL   M+  G+ P+ S   C++           A EL  
Sbjct: 378 VITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLN 437

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            + N   + D+  +N L+DGLCK+ + R+A +L  ++   G +PN VTY  ++ G C+EG
Sbjct: 438 EMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEG 497

Query: 456 GIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVS 497
            ++ A ++   ME+                  KI +   A  LL++M ++ + P+  T  
Sbjct: 498 KLKAALNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYD 557

Query: 498 ILE-ELLNK 505
           I+  E+L K
Sbjct: 558 IVRLEMLEK 566



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 157/338 (46%), Gaps = 51/338 (15%)

Query: 84  TPFMPSFNSLLGAL-----AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGV 138
           +P + ++N+L+        AGK Y           N I   P+ V+ N L++ FCK   V
Sbjct: 232 SPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKI--CPNEVTFNTLIDGFCKDENV 289

Query: 139 SDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI----- 193
           + A  A   + ++   P++VT   LI GLC  GK  EA  L+ K V    +PN++     
Sbjct: 290 AAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNAL 349

Query: 194 --------------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI 227
                                     PNVI + ++ID  CK+G + +   L   M   GI
Sbjct: 350 INGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGI 409

Query: 228 YPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIIN 287
            P+   YN LI   C        K +  AA EL  E  N  G  G     DV++Y  +I+
Sbjct: 410 LPNVSTYNCLIAGLC-------RKQDLQAAKELLNEMEN-KGLKG-----DVVTYNILID 456

Query: 288 SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
            LCK+     A++L  +M + G+ P+ V Y++L+DGYC+ G++  A  +   +E E   P
Sbjct: 457 GLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQP 516

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
           +  +YN LI  Y KI K+E A  L  EM+  G+ P+ +
Sbjct: 517 NVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRT 554



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 136/296 (45%), Gaps = 22/296 (7%)

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           F  M      P + ++NSL+  L         I L +++  +GL P+ V+ N L+N FCK
Sbjct: 296 FEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCK 355

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
              + +A      + ++   P+V+T   +I   C +G   E   L +  +       ++P
Sbjct: 356 KKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSML----DEGILP 411

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           NV  Y  +I GLC+   +   + L  +M+ +G+  D   YN LI   C      +A    
Sbjct: 412 NVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNA---- 467

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
                  E+ +N    LG+   P+ ++Y ++++  C +  +  A  +   M+     P+V
Sbjct: 468 -------EKLLNEMFNLGL--KPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNV 518

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
           V Y+ LI GYC + +++ A  L   +  +G  P+ ++Y+ +     ++E +E+  S
Sbjct: 519 VTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDIV-----RLEMLEKGFS 569



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 113/251 (45%), Gaps = 17/251 (6%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L +A+  ++ M+ +   P + ++N+L+     KK       + + ++   L+P+ ++ N
Sbjct: 323 KLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFN 382

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            +++ +CK   + + F     +L +   P+V T  CLI GLC +     A  L  +    
Sbjct: 383 TMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEME-- 440

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                +  +V+ Y  +IDGLCK+        L  +M   G+ P+   YN+L+  YC    
Sbjct: 441 --NKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYC---- 494

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
               +G   AAL +         +      P+V++Y  +I   CK   ++ A  L  +M 
Sbjct: 495 ---MEGKLKAALNVRTRMEKERKQ------PNVVTYNVLIKGYCKINKLEAANGLLNEML 545

Query: 307 SRGIIPDVVVY 317
            +G+ P+   Y
Sbjct: 546 EKGLNPNRTTY 556



 Score = 42.7 bits (99), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 21/140 (15%)

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
           A E F    +  F+L LT  N L+  L K  ++     ++K++ +     N+ T+ + I 
Sbjct: 149 AYEAFTRAKDYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFIN 208

Query: 450 GLCIEGGIEKAYDLLPDMEE---------------------KIRECLKAIELLHKMAKRY 488
           GLC  G + KA D + DM+                         +  KA   + +M    
Sbjct: 209 GLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANK 268

Query: 489 VKPDEITVSILEELLNKDEN 508
           + P+E+T + L +   KDEN
Sbjct: 269 ICPNEVTFNTLIDGFCKDEN 288


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 112/364 (30%), Positives = 175/364 (48%), Gaps = 31/364 (8%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+  + N ++N +CK+  V +A   + +I+     PD  T   LI G C +     A  +
Sbjct: 216 PNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKV 275

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F +     CR N +     Y  +I GLC    +++   LF+ MK    +P    Y  LI+
Sbjct: 276 FNEMPLKGCRRNEV----AYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIK 331

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C            S AL L +E      E G+   P++ +Y  +I+SLC     +KA+
Sbjct: 332 SLC-------GSERKSEALNLVKEM----EETGI--KPNIHTYTVLIDSLCSQCKFEKAR 378

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           EL   M  +G++P+V+ Y++LI+GYC  G I+DA  +   +ES    P+T +YN LI  Y
Sbjct: 379 ELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGY 438

Query: 360 SKIEKVEEALSLYGEMISMGVRPD----NSCIL---------EAAELFRTLHNTKFELDL 406
            K   V +A+ +  +M+   V PD    NS I           A  L   +++     D 
Sbjct: 439 CK-SNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQ 497

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             +  ++D LCKS R+  A +LF  L + G  PNVV YT +I G C  G +++A+ +L  
Sbjct: 498 WTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEK 557

Query: 467 MEEK 470
           M  K
Sbjct: 558 MLSK 561



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 113/415 (27%), Positives = 200/415 (48%), Gaps = 31/415 (7%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +++A+  F  M   +  P + ++  L+ +L G +     + L + +   G+ P+  +  +
Sbjct: 304 IDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTV 363

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++  C       A   LG++L K   P+V+T   LI G C +G   +A       V   
Sbjct: 364 LIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDA----VDVVELM 419

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               + PN   Y  +I G CK   V+K   +   M  R + PD   YNSLI   C + N+
Sbjct: 420 ESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNF 478

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           + A    S         +N  G +     PD  +Y S+I+SLCK   V++A +LF  ++ 
Sbjct: 479 DSAYRLLS--------LMNDRGLV-----PDQWTYTSMIDSLCKSKRVEEACDLFDSLEQ 525

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           +G+ P+VV+Y++LIDGYC  G++D+A  +   + S+ C+P++ ++N LI+      K++E
Sbjct: 526 KGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKE 585

Query: 368 ALSLYGEMISMGVRPDNS--CIL-----------EAAELFRTLHNTKFELDLTVFNCLVD 414
           A  L  +M+ +G++P  S   IL            A   F+ + ++  + D   +   + 
Sbjct: 586 ATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQ 645

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
             C+  RL  A ++  K+   G  P++ TY+ +I G    G    A+D+L  M +
Sbjct: 646 TYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRD 700



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 126/453 (27%), Positives = 184/453 (40%), Gaps = 92/453 (20%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL PDF +   L+  +C+   +  AF     +  K    + V    LI GLC+  +  EA
Sbjct: 248 GLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEA 307

Query: 177 SGLFTKFVAFDCRPNV-------------------------------IPNVICYASIIDG 205
             LF K    +C P V                                PN+  Y  +ID 
Sbjct: 308 MDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDS 367

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA------------KGN 253
           LC      K R L   M  +G+ P+   YN+LI  YC     EDA              N
Sbjct: 368 LCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPN 427

Query: 254 TSAALELHEEFVNGN--GELGVICH-------PDVLSYCSIINSLCKDVLVDKAKELFLD 304
           T    EL + +   N    +GV+         PDV++Y S+I+  C+    D A  L   
Sbjct: 428 TRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSL 487

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M  RG++PD   Y+S+ID  C   R+++A  LF S+E +G  P+   Y  LI+ Y K  K
Sbjct: 488 MNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGK 547

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
           V+EA  +  +M+S    P++                        FN L+ GLC   +L+ 
Sbjct: 548 VDEAHLMLEKMLSKNCLPNS----------------------LTFNALIHGLCADGKLKE 585

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM----------------E 468
           A  L +K+ + G +P V T T++I  L  +G  + AY     M                +
Sbjct: 586 ATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQ 645

Query: 469 EKIRE--CLKAIELLHKMAKRYVKPDEITVSIL 499
              RE   L A +++ KM +  V PD  T S L
Sbjct: 646 TYCREGRLLDAEDMMAKMRENGVSPDLFTYSSL 678



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 151/319 (47%), Gaps = 52/319 (16%)

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
           CY ++++ L + G V++++ ++++M    + P+ + YN ++  YC   N E+A       
Sbjct: 185 CYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEAN------ 238

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
                ++V+   E G+   PD  +Y S+I   C+   +D A ++F +M  +G   + V Y
Sbjct: 239 -----QYVSKIVEAGL--DPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAY 291

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           + LI G C+  RID+A  LFV ++ + C P   +Y  LI S    E+  EAL+L  EM  
Sbjct: 292 THLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEE 351

Query: 378 MGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
            G++P                      ++  +  L+D LC   +   A EL  ++   G 
Sbjct: 352 TGIKP----------------------NIHTYTVLIDSLCSQCKFEKARELLGQMLEKGL 389

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-----------------IRECLKAIEL 480
            PNV+TY  +I G C  G IE A D++  ME +                      KA+ +
Sbjct: 390 MPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGV 449

Query: 481 LHKMAKRYVKPDEITVSIL 499
           L+KM +R V PD +T + L
Sbjct: 450 LNKMLERKVLPDVVTYNSL 468



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 106/413 (25%), Positives = 174/413 (42%), Gaps = 36/413 (8%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G +E  DA+     M   + +P   ++N L+        +     L++ L    +LPD
Sbjct: 405 KRGMIE--DAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLER-KVLPD 461

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+ N L++  C+      A+  L  +  +   PD  T   +I  LC   +  EA  LF 
Sbjct: 462 VVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFD 521

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
                  +  V PNV+ Y ++IDG CK G V++  ++   M  +   P++  +N+LI   
Sbjct: 522 SLE----QKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGL 577

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C       A G    A  L E+ V    ++G+   P V +   +I+ L KD   D A   
Sbjct: 578 C-------ADGKLKEATLLEEKMV----KIGL--QPTVSTDTILIHRLLKDGDFDHAYSR 624

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F  M S G  PD   Y++ I  YC  GR+ DA  +   +   G  PD  +Y++LI  Y  
Sbjct: 625 FQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGD 684

Query: 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF------ELDLTVFNCLVDG 415
           + +   A  +   M   G  P     L    L + L   K+      E +L   + +++ 
Sbjct: 685 LGQTNFAFDVLKRMRDTGCEPSQHTFLS---LIKHLLEMKYGKQKGSEPELCAMSNMME- 740

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
                   +  EL +K+  +   PN  +Y  +I G+C  G +  A  +   M+
Sbjct: 741 ------FDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQ 787



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 105/420 (25%), Positives = 172/420 (40%), Gaps = 58/420 (13%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P   ++ S++ +L   K       L + L   G+ P+ V    L++ +CK   V +A + 
Sbjct: 495 PDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLM 554

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           L ++L K   P+ +T   LI GLC  GK  EA+ L  K V    +P V  + I    +I 
Sbjct: 555 LEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTI----LIH 610

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK--------GNTSA 256
            L KDG  +     F  M   G  PDA  Y + I+ YC      DA+           S 
Sbjct: 611 RLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSP 670

Query: 257 ALELHEEFVNGNGELGVI--------------CHPDVLSYCSIINSLCKD---------- 292
            L  +   + G G+LG                C P   ++ S+I  L +           
Sbjct: 671 DLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEP 730

Query: 293 --------VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE-SE 343
                   +  D   EL   M    + P+   Y  LI G C +G +  A K+F  ++ +E
Sbjct: 731 ELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNE 790

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-NSCIL------------EA 390
           G  P    +N L++   K++K  EA  +  +MI +G  P   SC +              
Sbjct: 791 GISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERG 850

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
             +F+ L    +  D   +  ++DG+ K   + + +ELF  + + G + +  TY+++I G
Sbjct: 851 TSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIEG 910


>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 833

 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 136/497 (27%), Positives = 225/497 (45%), Gaps = 55/497 (11%)

Query: 56  YLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNT 115
           Y+S   K G+ +  +A  FF+ M      P + +++ LL   A +  +V+ + L   +  
Sbjct: 338 YMSSLCKHGKSK--EAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEG 395

Query: 116 IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
            G++ D    NI+++ + K   + +  +   ++  +   PD  T G +I      G+  +
Sbjct: 396 NGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLAD 455

Query: 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI-YPDAFVY 234
           A   F + +A   +P  I     Y S+I G C  G + K + L  +M  RGI  P+   +
Sbjct: 456 AMDKFNQMIAMGLKPEGI----VYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPNIVFF 511

Query: 235 NSLIRVYCCAVNWEDAKGNTSAALELHE--EFVNGNGELGVICHPDVLSYCSIINSLCKD 292
           NS+I   C               +E H+  +FV   GE      PDV+++ S+I+     
Sbjct: 512 NSIINSLC----------KEGRVVEAHDIFDFVIHIGE-----RPDVITFNSLIDGYGLV 556

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             ++KA  +   M S GI PDVV Y++LIDGYC  GRIDD   LF  + S+G  P T +Y
Sbjct: 557 GKIEKAFGVLDAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITY 616

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHN 399
             +++      +   A  +  EMI  G   D             N+C  EA  +F+ L  
Sbjct: 617 GIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIAMFKKLGA 676

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
              + ++ + N ++D + K  +   A ELF  +   G  PN  TY VMI  L  EG +E+
Sbjct: 677 MNVKFNIAIINTMIDAMYKVRKREEAKELFDSISATGLVPNASTYGVMIKNLLKEGSVEE 736

Query: 460 AYDLLPDMEEK------------IR------ECLKAIELLHKMAKRYVKPDEITVSILEE 501
           A ++   ME+             IR      E +KA   + K+  + +  +  TVS+L  
Sbjct: 737 ADNMFSLMEKSGCAPSSRLLNYIIRVLLEKGEIVKAGNYMFKVDGKRISLEASTVSLLMA 796

Query: 502 LLNKDENCHECMNLLPS 518
           L +++    E + LLP+
Sbjct: 797 LFSREGKYWEDVKLLPA 813



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 117/457 (25%), Positives = 210/457 (45%), Gaps = 53/457 (11%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVF--SPDVVTLGCLIRG 166
           L  R+  +G+ PD +S N ++   C+      A   L  +++K    SP+VVT   +I G
Sbjct: 177 LLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNTVIHG 236

Query: 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
           L  +G+ ++A  LF + +    +  V+P+V+ Y SIID LCK   ++K  ++   M   G
Sbjct: 237 LFREGEVSKACNLFHEMM----QQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNG 292

Query: 227 IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII 286
             P+   YN +I  Y  +  W++  G       +  E  +          P++++  S +
Sbjct: 293 FQPNKVTYNCMIHGYSISGQWKETAG-------MFREMTSQG------LMPNIVTCNSYM 339

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           +SLCK     +A E F  M ++G  P++V YS L+ GY   G   D   LF S+E  G +
Sbjct: 340 SSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIV 399

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC--------------ILEAAE 392
            D   +N +I++Y K   ++E + ++ +M   GV PD +C              + +A +
Sbjct: 400 ADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPD-ACTYGIVIAAFSRMGRLADAMD 458

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG-PEPNVVTYTVMICGL 451
            F  +     + +  V++ L+ G C    L  A EL  ++   G P PN+V +  +I  L
Sbjct: 459 KFNQMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPNIVFFNSIINSL 518

Query: 452 CIEGGIEKAYDL------------------LPDMEEKIRECLKAIELLHKMAKRYVKPDE 493
           C EG + +A+D+                  L D    + +  KA  +L  M    ++PD 
Sbjct: 519 CKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDV 578

Query: 494 ITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           ++ + L +   ++    + + L    LS+  + + +T
Sbjct: 579 VSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTIT 615



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 117/529 (22%), Positives = 210/529 (39%), Gaps = 121/529 (22%)

Query: 58  SENSKSGEVELNDALCFFNYMIHMQ-PTPFMPSFNSLLGALA----------GKKYYV-- 104
           +E +++G +   DA   F+ ++    P P   S N    ALA          G    V  
Sbjct: 43  TERARAGTLSTEDAHHLFDELLRQTIPVP-ERSLNGFFTALARAPSSAACRDGPSLAVAL 101

Query: 105 -NFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFS--------- 154
            N IC  E    + L P   + NILM+C C+    +  F   GR L+             
Sbjct: 102 FNRICREEARPRVAL-PTVCTYNILMDCCCRTRRPTVGFALFGRFLKTGLKMDVIVASIL 160

Query: 155 ---------------------------PDVVTLGCLIRGLCMQGKFTEASGLFTKFV--A 185
                                      PD ++   +++ LC   +   A  L    V  +
Sbjct: 161 LKCLYHAKRSDDVVNLLLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKS 220

Query: 186 FDCRPN-------------------------------VIPNVICYASIIDGLCKDGFVNK 214
             C PN                               V+P+V+ Y SIID LCK   ++K
Sbjct: 221 GGCSPNVVTYNTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDK 280

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG--NTSAALELHEEFVNGNGELG 272
             ++   M   G  P+   YN +I  Y  +  W++  G      +  L    V  N  + 
Sbjct: 281 AELVLRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMS 340

Query: 273 VIC--------------------HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
            +C                     P++++Y  +++    +        LF  M+  GI+ 
Sbjct: 341 SLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVA 400

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
           D  V++ +ID Y   G +D+   +F  ++ +G IPD  +Y  +I ++S++ ++ +A+  +
Sbjct: 401 DQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKF 460

Query: 373 GEMISMGVRPD-------------NSCILEAAELFRTLHNTKF-ELDLTVFNCLVDGLCK 418
            +MI+MG++P+             +  +++A EL   + +      ++  FN +++ LCK
Sbjct: 461 NQMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPNIVFFNSIINSLCK 520

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
             R+  A ++F  +   G  P+V+T+  +I G  + G IEKA+ +L  M
Sbjct: 521 EGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVLDAM 569


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 124/465 (26%), Positives = 209/465 (44%), Gaps = 57/465 (12%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N  SG+ E + A      M  +       ++N L+     K+ +     L   +   G L
Sbjct: 250 NGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGAL 309

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P  V+ N +M   C++  VSDA   L  ++ +   PD+V+   LI G    G F EA  L
Sbjct: 310 PTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLL 369

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F++  +     N++P+V+ Y ++IDG C+ G ++  + +  DM   G+ PD   +  L+R
Sbjct: 370 FSELRS----KNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVR 425

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            +C         GN   A EL +E ++          PD ++Y + I    K     KA 
Sbjct: 426 GFC-------QMGNLPMAKELFDEMLSRG------LKPDCIAYTTRIVGELKLGNPSKAF 472

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            +  +MK+ G  PD++ Y+ LI+G C +G  DDA +L   +  EG +PD  +Y ++I+++
Sbjct: 473 GMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAH 532

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
                + +A  ++ +M+  G+ P                       +  +  L+      
Sbjct: 533 LISGLLRKAEEVFSDMLKKGIHPS----------------------VVTYTVLIHSYAVR 570

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK--------- 470
            RL  A + F ++   G  PNV+TY  +I GLC E  ++ AY+L  +ME K         
Sbjct: 571 GRLDFAKKYFDEMQDKGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTY 630

Query: 471 ---------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
                    ++    A++L   M  R +KPD  T S L + L+KD
Sbjct: 631 TILINENSNLQYWQDALKLYKDMLDREIKPDSCTHSALMKHLSKD 675



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 106/404 (26%), Positives = 178/404 (44%), Gaps = 69/404 (17%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GLLPD  + N ++        V++       +++    P +VT   ++   C +G+   A
Sbjct: 167 GLLPDVRNCNRVLKLLKDKSMVNEVEEVYSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRA 226

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             +      F C     PN + Y  +++GL   G  ++ + L   M   G+   A  YN 
Sbjct: 227 VEVLDVMRMFGCD----PNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNP 282

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK----- 291
           LIR +C    +E+A        +L  E + G G L     P V++Y +I+ SLC+     
Sbjct: 283 LIRGFCKKEMFEEAN-------DLRREML-GRGAL-----PTVVTYNTIMYSLCRLGRVS 329

Query: 292 ------DVLVD------------------------KAKELFLDMKSRGIIPDVVVYSSLI 321
                 DV+V+                        +A  LF +++S+ ++P VV Y++LI
Sbjct: 330 DARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLI 389

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
           DG C  G +D A+ +   +   G  PD  ++  L+  + ++  +  A  L+ EM+S G++
Sbjct: 390 DGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLK 449

Query: 382 PDNSCIL---------------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           PD  CI                +A  +   +    F  DL  +N L++GLCK      A 
Sbjct: 450 PD--CIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDAN 507

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           EL +K+   G  P+ VTYT +I    I G + KA ++  DM +K
Sbjct: 508 ELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKK 551



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 173/393 (44%), Gaps = 57/393 (14%)

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
           L++L+  F K + +    +   +++     PDV     +++ L  +    E   +++  +
Sbjct: 140 LDLLIQVFAKKLILEKCLMVFYKMVNNGLLPDVRNCNRVLKLLKDKSMVNEVEEVYSVMI 199

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
               RP ++     + +++D  CK+G V +   +   M+  G  P+   YN L       
Sbjct: 200 KCQIRPTIV----TFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVL------- 248

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
           VN    KG    A EL E+       L V  H    +Y  +I   CK  + ++A +L  +
Sbjct: 249 VNGLSGKGEFDRAKELIEQMSMLG--LKVSAH----TYNPLIRGFCKKEMFEEANDLRRE 302

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M  RG +P VV Y++++   C +GR+ DAR+    + +E  +PD  SYNTLI  YS++  
Sbjct: 303 MLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGN 362

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
             EAL L+ E+ S  + P                       +  +N L+DG C++  L  
Sbjct: 363 FAEALLLFSELRSKNLVP----------------------SVVTYNTLIDGGCRTGNLDI 400

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM----------------- 467
           A  +   + ++G  P+VVT+T+++ G C  G +  A +L  +M                 
Sbjct: 401 AKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIV 460

Query: 468 -EEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
            E K+    KA  +  +M      PD IT ++L
Sbjct: 461 GELKLGNPSKAFGMKEEMKAEGFPPDLITYNVL 493



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 166/390 (42%), Gaps = 61/390 (15%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            ++DA  + + M++    P + S+N+L+   +    +   + L   L +  L+P  V+ N
Sbjct: 327 RVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYN 386

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++  C+   +  A      +++    PDVVT   L+RG C  G    A  LF + ++ 
Sbjct: 387 TLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSR 446

Query: 187 DCRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKV 215
             +P+ I                               P++I Y  +I+GLCK G  +  
Sbjct: 447 GLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDA 506

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE-------------LHE 262
             L   M+  GI PD   Y S+I  +  +     A+   S  L+             +H 
Sbjct: 507 NELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHS 566

Query: 263 EFVNGNGEL-----------GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
             V G  +            GV   P+V++Y ++I  LCK+ ++D A  LF +M+S+G+ 
Sbjct: 567 YAVRGRLDFAKKYFDEMQDKGV--SPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVS 624

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           P+   Y+ LI+    +    DA KL+  +      PD+ +++ L+   SK  K+   L L
Sbjct: 625 PNKYTYTILINENSNLQYWQDALKLYKDMLDREIKPDSCTHSALMKHLSKDYKLLAVLRL 684

Query: 372 YGEMISMGVRPDNSCILEAAELFRTLHNTK 401
             E + + +   NS  +  AE F  L  +K
Sbjct: 685 --ENLPLAIVEINSTWI--AEGFVKLEESK 710



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 139/337 (41%), Gaps = 52/337 (15%)

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVN------------KVRVLFLDMK-----GR 225
           F   + +PN   +   + +I+D L K+GF+             KV    LD+      GR
Sbjct: 72  FRWVEKQPNFHRSETAFVAILDILAKNGFMKPAYWVMEKAIEVKVDGGVLDVLVGIGCGR 131

Query: 226 GIYPDAFVYNSLIRVY--------CCAVNWEDAKG-------NTSAALELHEE--FVNGN 268
                  + + LI+V+        C  V ++           N +  L+L ++   VN  
Sbjct: 132 NSEVSVKLLDLLIQVFAKKLILEKCLMVFYKMVNNGLLPDVRNCNRVLKLLKDKSMVNEV 191

Query: 269 GELGVI-----CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
            E+  +       P ++++ ++++S CK+  V +A E+   M+  G  P+ V Y+ L++G
Sbjct: 192 EEVYSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNG 251

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
               G  D A++L   +   G      +YN LI  + K E  EEA  L  EM+  G  P 
Sbjct: 252 LSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPT 311

Query: 384 ----NSCILEAAELFR---------TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
               N+ +     L R          + N     DL  +N L+ G  +      A  LF 
Sbjct: 312 VVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFS 371

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +L      P+VVTY  +I G C  G ++ A  +  DM
Sbjct: 372 ELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDM 408


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 117/413 (28%), Positives = 194/413 (46%), Gaps = 33/413 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L+++L   + M+    TP M +++SL+ ALA  +   +   L + +   G  PD +   
Sbjct: 95  KLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFY 154

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+   C+   V DA     ++ +    P+V     L+ GLC  G+  +A+ LF +  + 
Sbjct: 155 ELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSH 214

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C     P+V+ Y +++D +CK   V +   LF  M+  G  P+   +++LI   C    
Sbjct: 215 SCS----PDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLC---- 266

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G    ALE+    +         C P+  +Y ++I+ LC+   V +A+ELF  M 
Sbjct: 267 ---RTGELEKALEVFGSMLEAG------CKPNKYTYTTLISGLCRAEKVIQARELFEKMT 317

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE-SEGCIPDTSSYNTLINSYSKIEKV 365
              I PD V Y+SLI GYC  G +D+A KL+  +    G  P   ++NTLI+ + K+ K+
Sbjct: 318 QACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKL 377

Query: 366 EEALSLYGEMISMGVRPDNSCIL--------------EAAELFRTLHNTKFELDLTVFNC 411
             A  L  EM + G+  D SC                EA E+++ +   KF LD      
Sbjct: 378 GRANELVAEMGTKGLAAD-SCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVS 436

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            V GLCK+  +  A+ +F+   + G  PN  T+ ++   L   G +E A  L+
Sbjct: 437 FVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLM 489



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 110/401 (27%), Positives = 191/401 (47%), Gaps = 33/401 (8%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + +FN ++   A          + + +   G  PD VS +IL++   K+  + ++   
Sbjct: 43  PDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKI 102

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           L  ++ +  +P +     L+R L    +   AS LF + +    R    P+ + +  +I 
Sbjct: 103 LSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMI----RGGHHPDRLMFYELIL 158

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT-SAALELHEE 263
           GLC+ G V      F  M   G  P+  VYN L+   C +   E A  NT  A ++ H  
Sbjct: 159 GLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQA--NTLFAEMKSHS- 215

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
                      C PDV++Y ++++++CK   V++  +LF  M++ G +P+V+ +S+LI G
Sbjct: 216 -----------CSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHG 264

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            C  G ++ A ++F S+   GC P+  +Y TLI+   + EKV +A  L+ +M    + PD
Sbjct: 265 LCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPD 324

Query: 384 ----NSCIL---------EAAELFRTLHN-TKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
               NS I          EA +L+R +      +  +  FN L+DG CK  +L  A EL 
Sbjct: 325 AVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELV 384

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            ++   G   +  TY ++I GL     +++A ++   M EK
Sbjct: 385 AEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREK 425



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 179/376 (47%), Gaps = 35/376 (9%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           E +   G  PD  + N +M  F +   +  A      ++   + PD V+   LI GL   
Sbjct: 34  EEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKI 93

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           GK  E+  + ++ V         P++  Y+S++  L K   V+    LF +M   G +PD
Sbjct: 94  GKLDESLKILSEMVM----RGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPD 149

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF--VNGNGELGVICHPDVLSYCSIINS 288
             ++  LI   C A   +DA           E F  +  +G     C P+V  Y  +++ 
Sbjct: 150 RLMFYELILGLCQAGKVKDAS----------ERFKQMPKHG-----CQPNVPVYNVLLHG 194

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           LC    +++A  LF +MKS    PDVV Y++L+D  C   R+++  KLF ++ + G +P+
Sbjct: 195 LCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPN 254

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFR 395
             +++TLI+   +  ++E+AL ++G M+  G +P+                +++A ELF 
Sbjct: 255 VITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFE 314

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP-RYGPEPNVVTYTVMICGLCIE 454
            +       D   +N L+ G CK   +  A +L++++    G +P +VT+  +I G C  
Sbjct: 315 KMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKL 374

Query: 455 GGIEKAYDLLPDMEEK 470
           G + +A +L+ +M  K
Sbjct: 375 GKLGRANELVAEMGTK 390



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 153/349 (43%), Gaps = 62/349 (17%)

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
           N+  NV  Y+SII  L K+    +   +  +M   G  PD F +N +++ +  + N E A
Sbjct: 5   NIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKA 64

Query: 251 KGNTSAALE--------LHEEFVNGNGELGVICH--------------PDVLSYCSIINS 288
           +      +E         +   ++G  ++G +                P + +Y S++ +
Sbjct: 65  REVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRA 124

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           L K   VD A  LF +M   G  PD +++  LI G C  G++ DA + F  +   GC P+
Sbjct: 125 LAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPN 184

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTV 408
              YN L++      ++E+A +L+ EM S    P                      D+  
Sbjct: 185 VPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSP----------------------DVVT 222

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +N L+D +CK+ R+    +LF+ +   G  PNV+T++ +I GLC  G +EKA ++   M 
Sbjct: 223 YNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSML 282

Query: 469 E------------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           E                  +  + ++A EL  KM +  + PD +  + L
Sbjct: 283 EAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSL 331


>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera]
 gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 115/429 (26%), Positives = 199/429 (46%), Gaps = 58/429 (13%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++ +++G    + + V    L E +  +G+ PD ++ N L++  C+   V ++   L ++
Sbjct: 183 AYCTVIGGFYEENHRVEAHELFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKV 242

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
           L++  SP++ T+   I+G C +    EA  L            + P+VI Y ++I GLCK
Sbjct: 243 LKRGVSPNLFTVNIFIQGFCQRAMLNEAIRLLD-----GVGRGLTPDVITYNTLICGLCK 297

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           +  V +       M   G  PD F YNS+I  YC     ++A           ++ +   
Sbjct: 298 NFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNA-----------DQILRDG 346

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
              G +  PD  +YCS+IN LC+D  +D+A  +F +   +G+ P++V+ ++L+ G    G
Sbjct: 347 AFKGFV--PDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQG 404

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL 388
            I  A KL   +   GC PD  +YN +IN   KI  V +A +L  + I+ G  P      
Sbjct: 405 LILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLP------ 458

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
                           D+  FN L+DG CK  +L +A E+  ++  +G  P+V+TY  ++
Sbjct: 459 ----------------DVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSIL 502

Query: 449 CGLCIEGGIEK------------------AYDLLPDMEEKIRECLKAIELLHKMAKRYVK 490
            GLC  G  E                    Y++L +   K R+  +A+ L+ +M  + + 
Sbjct: 503 NGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLT 562

Query: 491 PDEITVSIL 499
           PD +    L
Sbjct: 563 PDVVNFGTL 571



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 153/578 (26%), Positives = 236/578 (40%), Gaps = 102/578 (17%)

Query: 12  AFKVKPSSSLRNSKKPISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDA 71
            F ++  S  R S+   +    N   S    S S V   T +  +  EN +    EL   
Sbjct: 148 TFTIRMKSFCRTSRPHAARRLLNNMPSQGCES-SAVAYCTVIGGFYEENHRVEAHEL--- 203

Query: 72  LCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131
              F  M+ +   P + +FN L+  L  K +      L  ++   G+ P+  ++NI +  
Sbjct: 204 ---FEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQG 260

Query: 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
           FC+   +++A   L  + R + +PDV+T   LI GLC   K  EA     K V       
Sbjct: 261 FCQRAMLNEAIRLLDGVGRGL-TPDVITYNTLICGLCKNFKVVEAEHYLRKMV----NEG 315

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
             P+   Y SIIDG CK G +     +  D   +G  PD   Y SLI   C   + + A 
Sbjct: 316 YEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAI 375

Query: 252 GNTSAALE--------LHEEFVNGNGELGVI--------------CHPDVLSYCSIINSL 289
              + A+E        L    V G  + G+I              C PD+ +Y  +IN L
Sbjct: 376 NVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGL 435

Query: 290 CKDVLVDKAKELFLD-----------------------------------MKSRGIIPDV 314
           CK   V  A  L +D                                   M + G+ PDV
Sbjct: 436 CKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDV 495

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           + Y+S+++G C  G+ +D    F  +  +GC+P+  +YN L  S+ K  KVEEAL+L  E
Sbjct: 496 ITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEE 555

Query: 375 MISMGVRP-------------DNSCILEAAELF-RTLHNTKFELDLTVFNCLVDGLCKSW 420
           M + G+ P             DN  +  A +LF R     KF   +  +N +++      
Sbjct: 556 MQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKL 615

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD---------LLPDMEE-- 469
            +  A +LF K+   G  P+  TY VMI G C  G I   Y          L+P +    
Sbjct: 616 NMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNINSGYSFLLVKIEKGLIPSLTTFG 675

Query: 470 KIRECL-------KAIELLHKMAKRYVKPDEITVSILE 500
           ++  CL       +A+ ++H M  + + P E+  +I E
Sbjct: 676 RVLNCLCLKRRVHEAVGIIHLMVHKGIVP-EVVNTIFE 712



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 167/367 (45%), Gaps = 49/367 (13%)

Query: 164 IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
           +R    +GK  EA  +F +   F+C P+V      Y +I++ L +  + ++   +++ M+
Sbjct: 83  MRNYGRKGKIQEAVDVFERMDFFNCEPSVQS----YNAIMNILVEYRYFDQAHKVYMRMR 138

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
            +GI PD + +   ++ +C       A+             +N     G  C    ++YC
Sbjct: 139 DKGIVPDVYTFTIRMKSFCRTSRPHAAR-----------RLLNNMPSQG--CESSAVAYC 185

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
           ++I    ++    +A ELF +M   GI PD++ ++ LI   C  G + ++ +L   +   
Sbjct: 186 TVIGGFYEENHRVEAHELFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKR 245

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEA 390
           G  P+  + N  I  + +   + EA+ L  + +  G+ PD             N  ++EA
Sbjct: 246 GVSPNLFTVNIFIQGFCQRAMLNEAIRLL-DGVGRGLTPDVITYNTLICGLCKNFKVVEA 304

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
               R + N  +E D   +N ++DG CK   +++A ++ +     G  P+  TY  +I G
Sbjct: 305 EHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLING 364

Query: 451 LCIEGGIEKAYDLLPDMEEKIRE------------------CLKAIELLHKMAKRYVKPD 492
           LC +G I++A ++  +  EK  +                   L+A++L+++M++    PD
Sbjct: 365 LCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPD 424

Query: 493 EITVSIL 499
             T +++
Sbjct: 425 IWTYNLV 431



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 106/228 (46%), Gaps = 24/228 (10%)

Query: 240 VYCCAVNWEDAKGNTSAALELHE--EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           VY  A+     KG    A+++ E  +F N        C P V SY +I+N L +    D+
Sbjct: 78  VYIGAMRNYGRKGKIQEAVDVFERMDFFN--------CEPSVQSYNAIMNILVEYRYFDQ 129

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A ++++ M+ +GI+PDV  ++  +  +C   R   AR+L  ++ S+GC     +Y T+I 
Sbjct: 130 AHKVYMRMRDKGIVPDVYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIG 189

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFEL 404
            + +     EA  L+ EM+ +G+ PD                + E+  L   +       
Sbjct: 190 GFYEENHRVEAHELFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSP 249

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
           +L   N  + G C+   L  A  L   + R G  P+V+TY  +ICGLC
Sbjct: 250 NLFTVNIFIQGFCQRAMLNEAIRLLDGVGR-GLTPDVITYNTLICGLC 296


>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
 gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
          Length = 734

 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 119/403 (29%), Positives = 192/403 (47%), Gaps = 33/403 (8%)

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           F  MI     P   ++N L+        +   + + E+++  GL PD  +   L+N  C 
Sbjct: 230 FQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYGSLLNYLCA 289

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
           +   S+    L  ++    SPD              G   +A  +F K      +  + P
Sbjct: 290 L---SEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMR----QHGLSP 342

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           NV+ Y ++ID LCK G V+   V F  M   G+ P+  V+NSL+   C    WE A+   
Sbjct: 343 NVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAE--- 399

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
               EL  E ++       IC P+ + + ++I +LC    V + + L   M+  G+ PD 
Sbjct: 400 ----ELVYEMLDQG-----IC-PNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDA 449

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
             Y+ LI GYCL GR D+A K+F  + S G  P   +YNTL++ Y    ++++A  L+ E
Sbjct: 450 FSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFRE 509

Query: 375 MISMGVRPD---NSCIL----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
           M+  GV P     + IL          EA EL+  + N+  + D+  +N +++GLCKS  
Sbjct: 510 MLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNC 569

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           +  A+++F+ L   G + N++T+T+MI  L   G  E A DL 
Sbjct: 570 VDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLF 612



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 125/462 (27%), Positives = 208/462 (45%), Gaps = 55/462 (11%)

Query: 104 VNFICLSERLNTI-------GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPD 156
           +N++C    +++        GL PD    NI  + + K   +  A     ++ +   SP+
Sbjct: 284 LNYLCALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPN 343

Query: 157 VVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVR 216
           VV  G LI  LC  G+  +A   F + +       V PN++ + S++ GLC      +  
Sbjct: 344 VVNYGALIDALCKLGRVDDAEVKFNQMI----NEGVTPNIVVFNSLVYGLCTVDKWERAE 399

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            L  +M  +GI P+A  +N+LI   C          N    +E     ++    +GV   
Sbjct: 400 ELVYEMLDQGICPNAVFFNTLICNLC----------NVGRVME-GRRLIDLMEHVGV--R 446

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PD  SY  +I+  C     D+A+++F  M S G+ P  V Y++L+ GYC   RIDDA  L
Sbjct: 447 PDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCL 506

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------- 383
           F  +  +G  P   +YNT+++   + ++  EA  LY  MI+ G + D             
Sbjct: 507 FREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCK 566

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
           ++C+ EA ++F++L +   +L++  F  ++  L K  R   A +LF  +P  G  PNVVT
Sbjct: 567 SNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVT 626

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEK------------IRECL------KAIELLHKMA 485
           Y ++   L  EG +E+   L   ME+             +R  L      +A   L K+ 
Sbjct: 627 YRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLD 686

Query: 486 KRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEES 527
           +R    +  T S+L  +   DE  H   +L   +   N+  S
Sbjct: 687 ERNFSVEASTTSLLISIFTSDEYQHHAKSLPEKYHFLNEANS 728



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 131/513 (25%), Positives = 222/513 (43%), Gaps = 90/513 (17%)

Query: 44  VSTVEEK-TKLLKYLSENSKSGEVELNDALCFFN-YMIHMQPTPFMPSFNSLLGALAGKK 101
           VSTV ++  +L + ++  ++SG + L+DAL  F+  +IH +P   + +FN +L A++   
Sbjct: 5   VSTVRDRCLELERIIAARARSGSLGLDDALKLFDELLIHARPASVV-AFNQILNAVSRAS 63

Query: 102 --------------YYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGR 147
                           V+      R  +I + P+  + +IL+ C C+M  +  +F   G 
Sbjct: 64  RASGRRSSSTSESELVVSLFNRMVRECSIKVAPNTCTYSILIGCLCRMGRLKHSFATFGL 123

Query: 148 ILRKVF------------------------------------SPDVVTLGCLIRGLCMQG 171
           IL+  +                                    +PD V+   L++G C + 
Sbjct: 124 ILKTGWRVNDIVINQLLKGLCDGKRVGEAMDVLLQRMPELGCTPDTVSYSILLKGFCNEN 183

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
           +  EA  L  + +A D   +  PNV+ Y ++IDGLCK    ++   +F  M   G+ P+ 
Sbjct: 184 RAEEALELL-RMMANDHGRSCPPNVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNN 242

Query: 232 FVYNSLIRVYCCAVNWED---------AKG------------NTSAALELHEEFVNGNGE 270
             YN LI  Y     W++         A+G            N   AL     F++   E
Sbjct: 243 DTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYGSLLNYLCALSEMHSFLDLMVE 302

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
            G+   PD   +    ++  K  ++DKA ++F  M+  G+ P+VV Y +LID  C +GR+
Sbjct: 303 NGL--SPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRV 360

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------- 383
           DDA   F  + +EG  P+   +N+L+     ++K E A  L  EM+  G+ P+       
Sbjct: 361 DDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTL 420

Query: 384 --NSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
             N C    ++E   L   + +     D   +  L+ G C + R   A ++F  +   G 
Sbjct: 421 ICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGL 480

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            P  VTY  ++ G C    I+ AY L  +M  K
Sbjct: 481 SPTEVTYNTLLHGYCSASRIDDAYCLFREMLRK 513



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 152/332 (45%), Gaps = 19/332 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            ++DA   FN MI+   TP +  FNSL+  L     +     L   +   G+ P+ V  N
Sbjct: 359 RVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFN 418

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+   C +  V +    +  +      PD  +   LI G C+ G+  EA  +F   V+ 
Sbjct: 419 TLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSI 478

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                + P  + Y +++ G C    ++    LF +M  +G+ P    YN+++        
Sbjct: 479 ----GLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKR 534

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
           + +AK       EL+   +N     G  C  D+ +Y  I+N LCK   VD+A ++F  + 
Sbjct: 535 FSEAK-------ELYLNMINS----GTKC--DIYTYNIILNGLCKSNCVDEAFKMFQSLC 581

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           S+G+  +++ ++ +I      GR +DA  LF +I + G +P+  +Y  +  +  +   +E
Sbjct: 582 SKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLE 641

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLH 398
           E  SL+  M   G  P NS +L A  + R LH
Sbjct: 642 EFDSLFSAMEKNGTAP-NSQMLNAL-VRRLLH 671



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 104/245 (42%), Gaps = 45/245 (18%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELF-LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
           P+  +Y  +I  LC+   +  +   F L +K+   + D+V+ + L+ G C   R+ +A  
Sbjct: 96  PNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVI-NQLLKGLCDGKRVGEAMD 154

Query: 336 LFVSIESE-GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
           + +    E GC PDT SY+ L+  +    + EEAL                      EL 
Sbjct: 155 VLLQRMPELGCTPDTVSYSILLKGFCNENRAEEAL----------------------ELL 192

Query: 395 RTL---HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
           R +   H      ++  +  ++DGLCK+     A  +F+++   G +PN  TY  +I G 
Sbjct: 193 RMMANDHGRSCPPNVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGY 252

Query: 452 CIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHE 511
              G              K +E    +++L KM+ R +KPD  T   L   L      H 
Sbjct: 253 LSIG--------------KWKE---VVQMLEKMSARGLKPDCYTYGSLLNYLCALSEMHS 295

Query: 512 CMNLL 516
            ++L+
Sbjct: 296 FLDLM 300


>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
          Length = 837

 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 122/412 (29%), Positives = 204/412 (49%), Gaps = 48/412 (11%)

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
           + +  + NI+M+  CK   + +A   L  ++ +   P+VV+   +I G C +G    AS 
Sbjct: 426 VANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASS 485

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           +F+  +A D +PNV+     Y+ +IDG  K G   K   LF  M    I P  F +N++I
Sbjct: 486 VFSDMLARDLKPNVV----TYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTII 541

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
              C      +A+      LE  E F+           P  ++Y SI++   K+  +D A
Sbjct: 542 NGLCKVGQMSEARDKLKNFLE--EGFI-----------PSCMTYNSIVDGFIKEGNIDSA 588

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
             ++ +M   G+ P+VV Y+SLI+G+C   RID A K    +  +G   D ++Y+ LI+ 
Sbjct: 589 LAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDG 648

Query: 359 YSKIEKVEEALSLYGEMISMGVRPD----NSCI--------LEAAEL-FRTLHNTKFELD 405
           + K   +E A  L+ E++ +G+ P+    NS I        +EAA + ++ + N +   D
Sbjct: 649 FCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCD 708

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
           L  +  L+DGL K  RL  A +L+ ++   G  P+++T+ V++ GLC +G +E A  +L 
Sbjct: 709 LGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILE 768

Query: 466 DMEEK----------------IREC-LKAIELLH-KMAKRYVKPDEITVSIL 499
           +M+ K                 RE  LK    LH +M  R + PD++T  IL
Sbjct: 769 EMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDIL 820



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 160/328 (48%), Gaps = 31/328 (9%)

Query: 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV 215
           ++V    L++G C QG    A  LF K         + PN + Y+ +I+G C  G + K 
Sbjct: 324 NLVVATSLMKGYCAQGNLDSALNLFNKIT----EDGLFPNKVTYSVLIEGCCNSGNIEKA 379

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
             L+  MK  GI P  F  NSL+R Y  A  WE+A        +L +E V    + GV  
Sbjct: 380 SELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEAS-------KLFDEAV----DCGV-- 426

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
             ++ +Y  +++ LCK   +D+A  L  +M ++G++P+VV Y+ +I G+C  G +D A  
Sbjct: 427 -ANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASS 485

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN----------- 384
           +F  + +    P+  +Y+ LI+   K    E+AL L+ +M+S+ + P +           
Sbjct: 486 VFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLC 545

Query: 385 --SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
               + EA +  +      F      +N +VDG  K   + SA  +++++  +G  PNVV
Sbjct: 546 KVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVV 605

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           TYT +I G C    I+ A     +M EK
Sbjct: 606 TYTSLINGFCKSNRIDLALKTRDEMREK 633



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 159/328 (48%), Gaps = 45/328 (13%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L +++ ++ + P   + N ++N  CK+  +S+A   L   L + F P  +T   ++ G  
Sbjct: 521 LFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFI 580

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
            +G    A  ++ +     C   V PNV+ Y S+I+G CK   ++       +M+ +G+ 
Sbjct: 581 KEGNIDSALAVYREM----CEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLE 636

Query: 229 PDAFVYNSLIRVYCCAVNWEDAK----------------------------GNTSAALEL 260
            D   Y++LI  +C   + E A+                             N  AAL  
Sbjct: 637 LDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVW 696

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
           +++ +N      + C  D+ +Y ++I+ L K+  +  A +L+++M S+GI+PD++ +  L
Sbjct: 697 YKKMINDR----IPC--DLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVL 750

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           ++G C  G++++ARK+   ++ +   P    YNTLI  Y +   ++EA +L+ EM+  G+
Sbjct: 751 VNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGL 810

Query: 381 RPDNSCILEAAELFRTLHNTKFELDLTV 408
            PD+         +  L N KF+ D ++
Sbjct: 811 VPDDVT-------YDILINGKFKGDRSL 831



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 126/544 (23%), Positives = 220/544 (40%), Gaps = 57/544 (10%)

Query: 3   SSSPATSRTAFKVKPSSSLRNSKKPISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSK 62
           SSSP   R +    P+S +     P+S N   +    H N     + ++ L  +    ++
Sbjct: 34  SSSP-YPRYSQDTVPTSQIHQETTPLSQNHVIDALLCHVN-----DPQSALRYFKRAETQ 87

Query: 63  SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP-- 120
            G +   DA C   +++   P     +   L   ++G       + +   +N        
Sbjct: 88  RGFIRGVDAYCVLLHILMRSPETHGHARKLLNRYVSGDSDPSPVVFVDHLINCAKRFDFE 147

Query: 121 -DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
            D    N L+N + +   + +A      ++ +   P V  +  L+  L  +    E   L
Sbjct: 148 LDHRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDL 207

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           + K V       +  +      ++    K+G V +    F + K RG+  DA  Y+ +I+
Sbjct: 208 YNKMVL----RGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQ 263

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C        K N++  LEL EE      E G +  P   ++ S+I +      + +A 
Sbjct: 264 AVC-------KKPNSNLGLELLEEM----KERGWV--PSEATFTSVIVACVAQGNMVEAL 310

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            L  +M + G   ++VV +SL+ GYC  G +D A  LF  I  +G  P+  +Y+ LI   
Sbjct: 311 RLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGC 370

Query: 360 SKIEKVEEALSLYGEMISMGVRPD----NSCIL---------EAAELFRTLHNTKFELDL 406
                +E+A  LY +M   G+ P     NS +          EA++LF    +     ++
Sbjct: 371 CNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVA-NI 429

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             +N ++  LCK  ++  A  L   +   G  PNVV+Y  MI G C +G ++ A  +  D
Sbjct: 430 FTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSD 489

Query: 467 MEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEE 526
                            M  R +KP+ +T SIL +   K  +  + ++L    LS N   
Sbjct: 490 -----------------MLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAP 532

Query: 527 SKLT 530
           +  T
Sbjct: 533 TDFT 536


>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Vitis vinifera]
          Length = 877

 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 122/412 (29%), Positives = 204/412 (49%), Gaps = 48/412 (11%)

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
           + +  + NI+M+  CK   + +A   L  ++ +   P+VV+   +I G C +G    AS 
Sbjct: 466 VANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASS 525

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           +F+  +A D +PNV+     Y+ +IDG  K G   K   LF  M    I P  F +N++I
Sbjct: 526 VFSDMLARDLKPNVV----TYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTII 581

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
              C      +A+      LE  E F+           P  ++Y SI++   K+  +D A
Sbjct: 582 NGLCKVGQMSEARDKLKNFLE--EGFI-----------PSCMTYNSIVDGFIKEGNIDSA 628

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
             ++ +M   G+ P+VV Y+SLI+G+C   RID A K    +  +G   D ++Y+ LI+ 
Sbjct: 629 LAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDG 688

Query: 359 YSKIEKVEEALSLYGEMISMGVRPD----NSCI--------LEAAEL-FRTLHNTKFELD 405
           + K   +E A  L+ E++ +G+ P+    NS I        +EAA + ++ + N +   D
Sbjct: 689 FCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCD 748

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
           L  +  L+DGL K  RL  A +L+ ++   G  P+++T+ V++ GLC +G +E A  +L 
Sbjct: 749 LGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILE 808

Query: 466 DMEEK----------------IREC-LKAIELLH-KMAKRYVKPDEITVSIL 499
           +M+ K                 RE  LK    LH +M  R + PD++T  IL
Sbjct: 809 EMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDIL 860



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 160/328 (48%), Gaps = 31/328 (9%)

Query: 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV 215
           ++V    L++G C QG    A  LF K         + PN + Y+ +I+G C  G + K 
Sbjct: 364 NLVVATSLMKGYCAQGNLDSALNLFNKIT----EDGLFPNKVTYSVLIEGCCNSGNIEKA 419

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
             L+  MK  GI P  F  NSL+R Y  A  WE+A        +L +E V    + GV  
Sbjct: 420 SELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEAS-------KLFDEAV----DCGV-- 466

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
             ++ +Y  +++ LCK   +D+A  L  +M ++G++P+VV Y+ +I G+C  G +D A  
Sbjct: 467 -ANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASS 525

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN----------- 384
           +F  + +    P+  +Y+ LI+   K    E+AL L+ +M+S+ + P +           
Sbjct: 526 VFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLC 585

Query: 385 --SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
               + EA +  +      F      +N +VDG  K   + SA  +++++  +G  PNVV
Sbjct: 586 KVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVV 645

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           TYT +I G C    I+ A     +M EK
Sbjct: 646 TYTSLINGFCKSNRIDLALKTRDEMREK 673



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 159/328 (48%), Gaps = 45/328 (13%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L +++ ++ + P   + N ++N  CK+  +S+A   L   L + F P  +T   ++ G  
Sbjct: 561 LFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFI 620

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
            +G    A  ++ +     C   V PNV+ Y S+I+G CK   ++       +M+ +G+ 
Sbjct: 621 KEGNIDSALAVYREM----CEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLE 676

Query: 229 PDAFVYNSLIRVYCCAVNWEDAK----------------------------GNTSAALEL 260
            D   Y++LI  +C   + E A+                             N  AAL  
Sbjct: 677 LDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVW 736

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
           +++ +N      + C  D+ +Y ++I+ L K+  +  A +L+++M S+GI+PD++ +  L
Sbjct: 737 YKKMINDR----IPC--DLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVL 790

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           ++G C  G++++ARK+   ++ +   P    YNTLI  Y +   ++EA +L+ EM+  G+
Sbjct: 791 VNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGL 850

Query: 381 RPDNSCILEAAELFRTLHNTKFELDLTV 408
            PD+         +  L N KF+ D ++
Sbjct: 851 VPDDVT-------YDILINGKFKGDRSL 871



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 126/544 (23%), Positives = 220/544 (40%), Gaps = 57/544 (10%)

Query: 3   SSSPATSRTAFKVKPSSSLRNSKKPISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSK 62
           SSSP   R +    P+S +     P+S N   +    H N     + ++ L  +    ++
Sbjct: 74  SSSP-YPRYSQDTVPTSQIHQETTPLSQNHVIDALLCHVN-----DPQSALRYFKRAETQ 127

Query: 63  SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP-- 120
            G +   DA C   +++   P     +   L   ++G       + +   +N        
Sbjct: 128 RGFIRGVDAYCVLLHILMRSPETHGHARKLLNRYVSGDSDPSPVVFVDHLINCAKRFDFE 187

Query: 121 -DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
            D    N L+N + +   + +A      ++ +   P V  +  L+  L  +    E   L
Sbjct: 188 LDHRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDL 247

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           + K V       +  +      ++    K+G V +    F + K RG+  DA  Y+ +I+
Sbjct: 248 YNKMVL----RGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQ 303

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C        K N++  LEL EE      E G +  P   ++ S+I +      + +A 
Sbjct: 304 AVC-------KKPNSNLGLELLEEM----KERGWV--PSEATFTSVIVACVAQGNMVEAL 350

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            L  +M + G   ++VV +SL+ GYC  G +D A  LF  I  +G  P+  +Y+ LI   
Sbjct: 351 RLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGC 410

Query: 360 SKIEKVEEALSLYGEMISMGVRPD----NSCIL---------EAAELFRTLHNTKFELDL 406
                +E+A  LY +M   G+ P     NS +          EA++LF    +     ++
Sbjct: 411 CNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVA-NI 469

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             +N ++  LCK  ++  A  L   +   G  PNVV+Y  MI G C +G ++ A  +  D
Sbjct: 470 FTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSD 529

Query: 467 MEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEE 526
                            M  R +KP+ +T SIL +   K  +  + ++L    LS N   
Sbjct: 530 -----------------MLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAP 572

Query: 527 SKLT 530
           +  T
Sbjct: 573 TDFT 576


>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 124/414 (29%), Positives = 191/414 (46%), Gaps = 31/414 (7%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           + AL F ++MIH    P   +FN+LL  L    Y+     +   L +  +L D  S  I+
Sbjct: 106 DQALTFLHHMIHEGHVPLSNTFNNLLCLLIRSNYFDKAWWIFNELKSKVVL-DAYSFGIM 164

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           +   C+       F  L  +     SP+VV    LI G C  G    A  LF K      
Sbjct: 165 IKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKDGNVMLAKNLFCKM----N 220

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
           R  ++PN   Y+ +++G  K G   +   ++ +MK  GI P+A+ YN LI  YC      
Sbjct: 221 RLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYC------ 274

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
              G    A ++  E      E G+ C   V++Y  +I  LC+     +A +L   +   
Sbjct: 275 -NDGMVDKAFKVFAEM----REKGIAC--GVMTYNILIGGLCRGKKFGEAVKLVHKVNKV 327

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G+ P++V Y+ LI+G+C + ++D A +LF  ++S G  P   +YNTLI  YSK+E +  A
Sbjct: 328 GLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGA 387

Query: 369 LSLYGEMISMGVRPD--NSCIL-----------EAAELFRTLHNTKFELDLTVFNCLVDG 415
           L L  EM    + P      IL           +A E+   +  +    D+  ++ L+ G
Sbjct: 388 LDLVKEMEERCIAPSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHG 447

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           LC    ++ A +LFK L     +PN V Y  MI G C EG   +A  LL +M +
Sbjct: 448 LCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQ 501



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 148/339 (43%), Gaps = 39/339 (11%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           + E +   G++P+  + N L++ +C    V  AF     +  K  +  V+T   LI GLC
Sbjct: 250 MYENMKRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLC 309

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
              KF EA     K V    +  + PN++ Y  +I+G C    ++    LF  +K  G+ 
Sbjct: 310 RGKKFGEA----VKLVHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLS 365

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           P    YN+LI  Y      E+  G      E+ E  +           P  ++Y  +I++
Sbjct: 366 PTLVTYNTLIAGYS---KVENLAGALDLVKEMEERCIA----------PSKVTYTILIDA 412

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
             +    +KA E+   M+  G++PDV  YS L+ G C+ G + +A KLF S+      P+
Sbjct: 413 FARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEMHLQPN 472

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTV 408
           +  YNT+I+ Y K      AL L  EM+  G+ P                      ++  
Sbjct: 473 SVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVP----------------------NVAS 510

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
           F   +  LC+  + + A  L  ++   G +P+V  Y ++
Sbjct: 511 FCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKMV 549



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 114/260 (43%), Gaps = 44/260 (16%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N L+G L   K +   + L  ++N +GL P+ V+ NIL+N FC +  +  A     ++
Sbjct: 300 TYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQL 359

Query: 149 LRKVFSPDVVTLGCLIRGL-------------------CMQGKFTEASGLFTKFVAFDC- 188
                SP +VT   LI G                    C+       + L   F   +  
Sbjct: 360 KSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNHT 419

Query: 189 -----------RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
                      +  ++P+V  Y+ ++ GLC  G + +   LF  +    + P++ +YN++
Sbjct: 420 EKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTM 479

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           I  YC        +G++  AL L  E V      G++  P+V S+CS I  LC+D    +
Sbjct: 480 IHGYC-------KEGSSYRALRLLNEMVQS----GMV--PNVASFCSTIGLLCRDEKWKE 526

Query: 298 AKELFLDMKSRGIIPDVVVY 317
           A+ L   M + G+ P V +Y
Sbjct: 527 AELLLGQMINSGLKPSVSLY 546



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 41/222 (18%)

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           DKA  +F ++KS+ ++ D   +  +I G C  G      +L   +E  G  P+   Y TL
Sbjct: 141 DKAWWIFNELKSK-VVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTL 199

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDG 415
           I+   K   V  A +L+ +M  +G+ P+                         ++ L++G
Sbjct: 200 IDGCCKDGNVMLAKNLFCKMNRLGLVPNPH----------------------TYSVLMNG 237

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC- 474
             K    R  +++++ + R G  PN   Y  +I   C +G ++KA+ +  +M EK   C 
Sbjct: 238 FFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACG 297

Query: 475 -----------------LKAIELLHKMAKRYVKPDEITVSIL 499
                             +A++L+HK+ K  + P+ +T +IL
Sbjct: 298 VMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNIL 339



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 84/185 (45%), Gaps = 4/185 (2%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +++ A+  FN +     +P + ++N+L+   +  +     + L + +    + P  V+  
Sbjct: 348 KMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYT 407

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           IL++ F ++     A      + +    PDV T   L+ GLC+ G   EAS LF      
Sbjct: 408 ILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEM 467

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             +    PN + Y ++I G CK+G   +   L  +M   G+ P+   + S I + C    
Sbjct: 468 HLQ----PNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPNVASFCSTIGLLCRDEK 523

Query: 247 WEDAK 251
           W++A+
Sbjct: 524 WKEAE 528



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 14/138 (10%)

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS------CIL-------EAA 391
           C   T  Y+T++N+Y      ++AL+    MI  G  P ++      C+L       +A 
Sbjct: 85  CSTYTPLYDTVVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLLCLLIRSNYFDKAW 144

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
            +F  L  +K  LD   F  ++ G C++      + L   L  +G  PNVV YT +I G 
Sbjct: 145 WIFNEL-KSKVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGC 203

Query: 452 CIEGGIEKAYDLLPDMEE 469
           C +G +  A +L   M  
Sbjct: 204 CKDGNVMLAKNLFCKMNR 221



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 10/127 (7%)

Query: 117 GLLPDFVSLNILMNCFC---KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF 173
           GL+PD  + ++L++  C    M   S  F +LG +      P+ V    +I G C +G  
Sbjct: 433 GLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEMH---LQPNSVIYNTMIHGYCKEGSS 489

Query: 174 TEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233
             A  L  + V    +  ++PNV  + S I  LC+D    +  +L   M   G+ P   +
Sbjct: 490 YRALRLLNEMV----QSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSL 545

Query: 234 YNSLIRV 240
           Y  + +V
Sbjct: 546 YKMVHKV 552


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 117/423 (27%), Positives = 208/423 (49%), Gaps = 34/423 (8%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           +SG ++  +  C      ++QP+    + +S++  L       + + L E +   G  PD
Sbjct: 351 ESGRIDKAEEACLEIAGRNIQPSS--GTCHSVIQELCKAGRVDSALSLLETMIKRGYCPD 408

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVT--LGCLIRGLCMQGKFTEASGL 179
             + ++L+N  CK   + +A   L  + RK+ S          L+  LC   K  +A  +
Sbjct: 409 MATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAI 468

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F+  V+     + +P+V+ Y+ +IDG CK   + +   L+  M      P+   YN+ + 
Sbjct: 469 FSTMVS---ERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFL- 524

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
                 N    KG  + A  ++EE V         C PDV++Y ++I+        D+A 
Sbjct: 525 ------NGLMRKGRIADAQGVYEEMVAAG------CSPDVITYSTLIHGFSLARKHDQAH 572

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           ELF  M SRG  P+ V Y+ L+ G C   + D+A +LF  +   GC PD  +Y TL+  +
Sbjct: 573 ELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGF 632

Query: 360 SKIEKVEEALSLYGEMISMGVRPD---NSCIL----------EAAELFRTLHNTKFELDL 406
             + K+E+A+ ++ EM+S G  PD    +C+L          EA +LF+ + + + + D 
Sbjct: 633 CNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDT 692

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPR-YGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
              N ++DGL K+ RL  A E+F+++ + +G  P++VTY  +I GLC E  + +A  +  
Sbjct: 693 VSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFK 752

Query: 466 DME 468
           +++
Sbjct: 753 EID 755



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 121/415 (29%), Positives = 194/415 (46%), Gaps = 48/415 (11%)

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           V+    ++  CK   +  AF A  R +++  S        LIR L   G+  +A     +
Sbjct: 306 VAWTAFLSGLCKSGKIEQAFEAC-RTMQESLSSSQPVYDMLIRLLIESGRIDKAEEACLE 364

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
               + +P+   +  C+ S+I  LCK G V+    L   M  RG  PD   ++ LI   C
Sbjct: 365 IAGRNIQPS---SGTCH-SVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELC 420

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
            A   ++A           +EF+ G             SY S++NSLCK   V +A  +F
Sbjct: 421 KADKIQEA-----------QEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIF 469

Query: 303 LDMKS-RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
             M S R  +PDVV YS LIDG+C +  +  A KL+  +    C+P+ ++YN  +N   +
Sbjct: 470 STMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMR 529

Query: 362 IEKVEEALSLYGEMISMGVRPD---NSCIL----------EAAELFRTLHNTKFELDLTV 408
             ++ +A  +Y EM++ G  PD    S ++          +A ELF T+ +     +   
Sbjct: 530 KGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVT 589

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +NCL+ GLCK  +   A ELF+K+   G +P+ VTYT ++ G C  G IE+A ++  +M 
Sbjct: 590 YNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMV 649

Query: 469 EKIRE-------CL-----------KAIELLHKMAKRYVKPDEITVSILEELLNK 505
            K  +       CL           +A +L   M  R  KPD ++ +I+ + L+K
Sbjct: 650 SKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSK 704



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 167/345 (48%), Gaps = 36/345 (10%)

Query: 126 NILMNCFCKMIGVSDAFVALGRIL-RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
           N L+N  CK   V  AF     ++  + F PDVV+   LI G C   +   A  L+ + +
Sbjct: 450 NSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMI 509

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
             +C    +PNV  Y + ++GL + G +   + ++ +M   G  PD   Y++LI  +  A
Sbjct: 510 DLNC----VPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLA 565

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
              + A        EL E  ++        C P+ ++Y  +++ LCK+   D+A ELF  
Sbjct: 566 RKHDQAH-------ELFETMISRG------CRPNAVTYNCLLHGLCKESKPDEAHELFRK 612

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M  RG  PD V Y++L+ G+C +G+I+ A ++F  + S+G  PD  +YN L+  + +  K
Sbjct: 613 MVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGK 672

Query: 365 VEEALSLYGEMISMGVRPDNSC-------------ILEAAELF-RTLHNTKFELDLTVFN 410
             EA  L+  M+S   +PD                + +A E+F R   +     DL  +N
Sbjct: 673 PGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYN 732

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI----CGL 451
            L+ GLC   RL  A ++FK++ R    P+   + V++    CG+
Sbjct: 733 SLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAIKCGI 777



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 135/293 (46%), Gaps = 18/293 (6%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           EL  A   +  MI +   P + ++N+ L  L  K    +   + E +   G  PD ++ +
Sbjct: 497 ELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYS 556

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ F        A      ++ +   P+ VT  CL+ GLC + K  EA  LF K V  
Sbjct: 557 TLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVER 616

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C P+ +     Y +++ G C  G + +   +F +M  +G  PD   YN L++ +  A  
Sbjct: 617 GCDPDRVT----YTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRA-- 670

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM- 305
                G    A +L +  V+        C PD +S+  +I+ L K   +D A E+F  M 
Sbjct: 671 -----GKPGEAKQLFQVMVSRQ------CKPDTVSHNIMIDGLSKAKRLDDAVEVFERME 719

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
           +  G  PD+V Y+SLI G C   R+ +A K+F  I+     PD  ++N L+ +
Sbjct: 720 QDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEA 772



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 76/361 (21%), Positives = 144/361 (39%), Gaps = 68/361 (18%)

Query: 159 TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVL 218
           T+G +I+ L   G   EA   F    A     N   +V  Y  ++D L +   + +   +
Sbjct: 99  TVGAVIKHLRDGG---EALTFFRWLQA----RNFKHDVFTYNCLLDKLIRHRDLKQAGQV 151

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD 278
           F  M  +G+ P+ F Y  L++  C        + N+  A+    E V+   +      P 
Sbjct: 152 FEKMVAQGVVPNGFTYAVLVQSSC-------YERNSDEAVRFFGEMVDKGFK------PS 198

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
              Y  +   L       +   +F     + +  ++++  +L+  + +  +  +A KLF 
Sbjct: 199 STLYQKVTECLKATGKEGEFSRVFGRDLEKRVAVEMMLKKALLVNFVIQDKAIEASKLFR 258

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC------------ 386
           ++   GC PD + Y+ ++ ++ K+E ++EA  L+ EM      P N+             
Sbjct: 259 AMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLNNVAWTAFLSGLCKS 318

Query: 387 --ILEAAELFRTLHNT-----------------KFELDLTVFNCL--------------- 412
             I +A E  RT+  +                    +D     CL               
Sbjct: 319 GKIEQAFEACRTMQESLSSSQPVYDMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCH 378

Query: 413 --VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
             +  LCK+ R+ SA  L + + + G  P++ T++++I  LC    I++A + L  M+ K
Sbjct: 379 SVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRK 438

Query: 471 I 471
           I
Sbjct: 439 I 439



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 81/207 (39%), Gaps = 32/207 (15%)

Query: 74  FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
            F  MI     P   ++N LL  L  +        L  ++   G  PD V+   L+  FC
Sbjct: 574 LFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFC 633

Query: 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
            +  +  A      ++ K   PDVV   CL++G    GK  EA  LF   V+  C+P+ +
Sbjct: 634 NVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTV 693

Query: 194 --------------------------------PNVICYASIIDGLCKDGFVNKVRVLFLD 221
                                           P+++ Y S+I GLC +  +++   +F +
Sbjct: 694 SHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKE 753

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWE 248
           +    + PD   +N L+    C + ++
Sbjct: 754 IDRLKLSPDPHAFNVLLEAIKCGIVYQ 780



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 22/156 (14%)

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
           EA   FR L    F+ D+  +NCL+D L +   L+ A ++F+K+   G  PN  TY V++
Sbjct: 112 EALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLV 171

Query: 449 CGLCIEGGIEKAYDLLPDM-----------EEKIRECLKAIELLHKMAKRYVKPDEITVS 497
              C E   ++A     +M            +K+ ECLKA     + ++ + +  E  V+
Sbjct: 172 QSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVA 231

Query: 498 ILEELLNKDENCHECMNLLPSFLSRNQ--EESKLTR 531
           + E +L K         LL +F+ +++  E SKL R
Sbjct: 232 V-EMMLKK--------ALLVNFVIQDKAIEASKLFR 258


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1164

 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 184/375 (49%), Gaps = 30/375 (8%)

Query: 109  LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
            L E++   GL P+  +   ++   C++  +++A  A   ++ +   PD +    L+ G C
Sbjct: 726  LIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFC 785

Query: 169  MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
             +G    AS  F +  + D    + P+V+ Y +II G C+ G + +   LF +M  RG+ 
Sbjct: 786  KRGDIRAASKFFYEMHSRD----ITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLE 841

Query: 229  PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
            PD   +  L+  YC A       G+   A  +H   +         C P+V++Y ++I+ 
Sbjct: 842  PDIITFTELMNGYCKA-------GHIKDAFRVHNHMIQAG------CSPNVVTYTTLIDG 888

Query: 289  LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
            LCK+  +D A EL  +M   G+ P++  Y+S+++G C  G I++A KL    E+ G   D
Sbjct: 889  LCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNAD 948

Query: 349  TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFR 395
            T +Y TL+++Y K  ++++A  +  EM+  G++P              +  + +  +L  
Sbjct: 949  TVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLN 1008

Query: 396  TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
             +       + T FNCLV   C    L++A  ++K +   G EP+  TY  ++ G C   
Sbjct: 1009 WMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNAR 1068

Query: 456  GIEKAYDLLPDMEEK 470
             +++A+ L  +M+ K
Sbjct: 1069 NMKEAWFLFQEMKGK 1083



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 115/411 (27%), Positives = 194/411 (47%), Gaps = 48/411 (11%)

Query: 116  IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
            +G+  +  S NI+++  C++  +++A   L  +  K ++PDV++   +I G C  G+  +
Sbjct: 663  VGVCWNVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDK 722

Query: 176  ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
               L  K      +  + PN   Y SII  LC+   + +    F +M G+GI PD  VY 
Sbjct: 723  VWKLIEKMK----QKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYT 778

Query: 236  SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
            +L+  +C        +G+  AA +   E  + +        PDVL+Y +II+  C+   +
Sbjct: 779  TLVDGFC-------KRGDIRAASKFFYEMHSRD------ITPDVLTYTAIISGFCQIGDM 825

Query: 296  DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
             +A +LF +M  RG+ PD++ ++ L++GYC  G I DA ++   +   GC P+  +Y TL
Sbjct: 826  VEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTL 885

Query: 356  INSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKF 402
            I+   K   ++ A  L  EM  +G++P+             +  I EA +L         
Sbjct: 886  IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGL 945

Query: 403  ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
              D   +  L+D  CKS  +  A E+  ++   G +P +VT+ V++ G C+ G +E    
Sbjct: 946  NADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEK 1005

Query: 463  LLPDMEEK-----------------IRECLKAIELLHK-MAKRYVKPDEIT 495
            LL  M  K                 IR  LKA   ++K M  R V+PD  T
Sbjct: 1006 LLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKT 1056



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 112/430 (26%), Positives = 191/430 (44%), Gaps = 69/430 (16%)

Query: 117  GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
            G+LPD +    L++ FCK   +  A      +  +  +PDV+T   +I G C  G   EA
Sbjct: 769  GILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEA 828

Query: 177  SGLFTKFVAFDCRPNVI-------------------------------PNVICYASIIDG 205
              LF + +     P++I                               PNV+ Y ++IDG
Sbjct: 829  GKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDG 888

Query: 206  LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
            LCK+G ++    L  +M   G+ P+ F YNS++   C         GN   A++L  EF 
Sbjct: 889  LCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLC-------KSGNIEEAVKLVGEFE 941

Query: 266  NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
                      + D ++Y +++++ CK   +DKA+E+  +M  +G+ P +V ++ L++G+C
Sbjct: 942  AAG------LNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFC 995

Query: 326  LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
            L G ++D  KL   + ++G  P+ +++N L+  Y     ++ A ++Y +M S GV PD  
Sbjct: 996  LHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDG- 1054

Query: 386  CILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
                     +T  N            LV G C +  ++ AW LF+++   G   +V TY+
Sbjct: 1055 ---------KTYEN------------LVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYS 1093

Query: 446  VMICGLCIEGGIEKAYDLLPDMEEKIRECLKAI-ELLHKMAKRYVKPDEITVSILEELLN 504
            V+I G        +A ++   M        K I +       +  +PD I   I E + N
Sbjct: 1094 VLIKGFFKRKKFVEAREIFDQMRRDGLAADKEIFDFFSDTKYKGKRPDTIVDPIDEIIEN 1153

Query: 505  K--DENCHEC 512
               DE   E 
Sbjct: 1154 YLVDEQLREA 1163



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 175/362 (48%), Gaps = 57/362 (15%)

Query: 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV 215
           +V +   +I  +C  G+  EA  L    +  + +    P+VI Y+++I+G C+ G ++KV
Sbjct: 668 NVASYNIVIHFVCQLGRINEAHHLL---LLMELK-GYTPDVISYSTVINGYCRFGELDKV 723

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
             L   MK +G+ P+++ Y S+I + C      +A+       E   E + G G L    
Sbjct: 724 WKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAE-------EAFSEMI-GQGIL---- 771

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
            PD + Y ++++  CK   +  A + F +M SR I PDV+ Y+++I G+C +G + +A K
Sbjct: 772 -PDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGK 830

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395
           LF  +   G  PD  ++  L+N Y K   +++A  ++  MI  G  P             
Sbjct: 831 LFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSP------------- 877

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
                    ++  +  L+DGLCK   L SA EL  ++ + G +PN+ TY  ++ GLC  G
Sbjct: 878 ---------NVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSG 928

Query: 456 GIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVS 497
            IE+A  L+ + E                   K  E  KA E+L +M  + ++P  +T +
Sbjct: 929 NIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFN 988

Query: 498 IL 499
           +L
Sbjct: 989 VL 990



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 160/370 (43%), Gaps = 39/370 (10%)

Query: 67   ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            ++  A  FF  M     TP + ++ +++         V    L   +   GL PD ++  
Sbjct: 789  DIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFT 848

Query: 127  ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
             LMN +CK   + DAF     +++   SP+VVT   LI GLC +G    A+ L  +    
Sbjct: 849  ELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEM--- 905

Query: 187  DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
              +  + PN+  Y SI++GLCK G + +   L  + +  G+  D   Y +L+  YC    
Sbjct: 906  -WKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYC---- 960

Query: 247  WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                 G    A E+  E       LG    P ++++  ++N  C   +++  ++L   M 
Sbjct: 961  ---KSGEMDKAQEILTEM------LGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWML 1011

Query: 307  SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            ++GI P+   ++ L+  YC+   +  A  ++  + S G  PD  +Y  L+  +     ++
Sbjct: 1012 AKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMK 1071

Query: 367  EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
            EA  L+ EM   G                      F + ++ ++ L+ G  K  +   A 
Sbjct: 1072 EAWFLFQEMKGKG----------------------FSVSVSTYSVLIKGFFKRKKFVEAR 1109

Query: 427  ELFKKLPRYG 436
            E+F ++ R G
Sbjct: 1110 EIFDQMRRDG 1119



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 144/297 (48%), Gaps = 37/297 (12%)

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
           T+ A+ +  EF     E+GV    +V SY  +I+ +C+   +++A  L L M+ +G  PD
Sbjct: 650 TATAIIVFREF----PEVGVCW--NVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPD 703

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           V+ YS++I+GYC  G +D   KL   ++ +G  P++ +Y ++I    +I K+ EA   + 
Sbjct: 704 VISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFS 763

Query: 374 EMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           EMI  G+ PD                I  A++ F  +H+     D+  +  ++ G C+  
Sbjct: 764 EMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIG 823

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE----------- 469
            +  A +LF ++   G EP+++T+T ++ G C  G I+ A+ +   M +           
Sbjct: 824 DMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYT 883

Query: 470 -------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519
                  K  +   A ELLH+M K  ++P+  T + +   L K  N  E + L+  F
Sbjct: 884 TLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF 940



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/315 (20%), Positives = 119/315 (37%), Gaps = 54/315 (17%)

Query: 62   KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
            K G+++  + L    + I +QP  F  ++NS++  L         + L       GL  D
Sbjct: 891  KEGDLDSANELLHEMWKIGLQPNIF--TYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNAD 948

Query: 122  FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             V+   LM+ +CK   +  A   L  +L K   P +VT   L+ G C+ G   +   L  
Sbjct: 949  TVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLN 1008

Query: 182  KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
              +A      + PN   +  ++   C    +     ++ DM  RG+ PD   Y +L++ +
Sbjct: 1009 WMLA----KGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGH 1064

Query: 242  CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
            C A N                                                + +A  L
Sbjct: 1065 CNARN------------------------------------------------MKEAWFL 1076

Query: 302  FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
            F +MK +G    V  YS LI G+    +  +AR++F  +  +G   D   ++   ++  K
Sbjct: 1077 FQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAADKEIFDFFSDTKYK 1136

Query: 362  IEKVEEALSLYGEMI 376
             ++ +  +    E+I
Sbjct: 1137 GKRPDTIVDPIDEII 1151



 Score = 45.1 bits (105), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 95/236 (40%), Gaps = 32/236 (13%)

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK-IEKVEEALSLYGEMISMGVRPDNS 385
            G + +ARK+F  + + G +    S N  +   SK   K   A+ ++ E   +GV  + +
Sbjct: 611 FGMLPEARKVFEKMLNYGLVLSVDSCNVYLARLSKDCNKTATAIIVFREFPEVGVCWNVA 670

Query: 386 C-------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
                         I EA  L   +    +  D+  ++ +++G C+   L   W+L +K+
Sbjct: 671 SYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKM 730

Query: 433 PRYGPEPNVVTYTVMI---CGLCIEGGIEKAYD------LLPDMEE---------KIREC 474
            + G +PN  TY  +I   C +C     E+A+       +LPD            K  + 
Sbjct: 731 KQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDI 790

Query: 475 LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
             A +  ++M  R + PD +T + +     +  +  E   L    L R  E   +T
Sbjct: 791 RAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIIT 846


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 187/385 (48%), Gaps = 56/385 (14%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  P     NIL+N FCK   + DA +    I ++   P  V+   LI GLC      E 
Sbjct: 218 GFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDE- 276

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
            G   K    + R  + P+V  Y+ +I GLCK+G ++    LF +M+ RG+ P+   + +
Sbjct: 277 -GFRLKKTMEENR--IYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTA 333

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI       + +       +A+  + + +     +GV   PD++ Y +++N LCK   V+
Sbjct: 334 LI-------DGQYRSRRMDSAMNTYHQMLT----MGV--KPDLVMYNTLLNGLCKVGDVN 380

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           KA++L  +MK  G+ PD + Y++LIDGYC  G ++ A ++   +  EG + D  ++  LI
Sbjct: 381 KARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALI 440

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           + + +  +V +A     EM+  G++PD++                       +  ++DG 
Sbjct: 441 SGFCRDGRVRDAERTLREMVEAGMKPDDA----------------------TYTMVIDGY 478

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLK 476
           CK   ++  ++L K++   G +P V+TY V++ GLC +G ++ A     +M         
Sbjct: 479 CKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNA-----NM--------- 524

Query: 477 AIELLHKMAKRYVKPDEITVSILEE 501
              LL  M    V PD+IT +IL E
Sbjct: 525 ---LLEAMLNLGVTPDDITYNILLE 546



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 169/370 (45%), Gaps = 27/370 (7%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  + DA   FN +      P   SFN+L+  L   +       L + +    + PD  +
Sbjct: 236 EGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFT 295

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            ++L++  CK   +  A      + ++   P+ +T   LI G     +   A   + + +
Sbjct: 296 YSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQML 355

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
                  V P+++ Y ++++GLCK G VNK R L  +MK  G+ PD   Y +LI  YC  
Sbjct: 356 TM----GVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYC-- 409

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                 +G+  +A+E+ +    G  E GV+   D +++ ++I+  C+D  V  A+    +
Sbjct: 410 -----KEGDLESAMEIRK----GMNEEGVVL--DNVAFTALISGFCRDGRVRDAERTLRE 458

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M   G+ PD   Y+ +IDGYC  G +    KL   ++  G  P   +YN L+N   K  +
Sbjct: 459 MVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQ 518

Query: 365 VEEALSLYGEMISMGVRPDN---SCILE-------AAELFRTLHNTKFELDLTVFNCLVD 414
           ++ A  L   M+++GV PD+   + +LE       A +L +  +     +D   +  LV 
Sbjct: 519 MKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGKAEDLLKLRNEKGLIVDYAYYTSLVS 578

Query: 415 GLCKSWRLRS 424
              KS + R 
Sbjct: 579 EYNKSLKDRQ 588



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 97/220 (44%), Gaps = 30/220 (13%)

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G  P V  Y+ LI+ +C  G I DA+ +F  I   G  P T S+NTLIN   K   ++E 
Sbjct: 218 GFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEG 277

Query: 369 LSLYGEMISMGVRPD---NSCILE----------AAELFRTLHNTKFELDLTVFNCLVDG 415
             L   M    + PD    S ++           A +LF  +       +   F  L+DG
Sbjct: 278 FRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDG 337

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL 475
             +S R+ SA   + ++   G +P++V Y  ++ GLC  G + KA  L+ +M        
Sbjct: 338 QYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEM-------- 389

Query: 476 KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
                  KM    +KPD+IT + L +   K+ +    M +
Sbjct: 390 -------KMVG--MKPDKITYTTLIDGYCKEGDLESAMEI 420



 Score = 43.5 bits (101), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 18/135 (13%)

Query: 383 DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
           D+  + +A + FR + N+ F++       L+D +  S    + W  + ++  YG  P V 
Sbjct: 165 DSGFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQ 224

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKM 484
            Y ++I   C EG I  A  +  ++ +                  K R   +   L   M
Sbjct: 225 YYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTM 284

Query: 485 AKRYVKPDEITVSIL 499
            +  + PD  T S+L
Sbjct: 285 EENRIYPDVFTYSVL 299


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 115/458 (25%), Positives = 218/458 (47%), Gaps = 38/458 (8%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + ++N+L+ A + K        L   +   G  P   + N ++N  CK      A   
Sbjct: 268 PDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEV 327

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
              +LR   SPD  T   L+   C +G   E   +F+   + D    V+P+++C++S++ 
Sbjct: 328 FAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRD----VVPDLVCFSSMMS 383

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
              + G ++K  + F  +K  G+ PD  +Y  LI+ YC        KG  S A+ L  E 
Sbjct: 384 LFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYC-------RKGMISVAMNLRNEM 436

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           +         C  DV++Y +I++ LCK  ++ +A +LF +M  R + PD    + LIDG+
Sbjct: 437 LQQG------CAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGH 490

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP-- 382
           C +G + +A +LF  ++ +    D  +YNTL++ + K+  ++ A  ++ +M+S  + P  
Sbjct: 491 CKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTP 550

Query: 383 -DNSCILEA-------AELFRT---LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
              S ++ A       AE FR    + +   +  + + N ++ G C+S          +K
Sbjct: 551 ISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEK 610

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK----IRECLKAIELLHKMAKR 487
           +   G  P+ ++Y  +I G   E  + KA+ L+  MEE+    + +      +LH   ++
Sbjct: 611 MISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQ 670

Query: 488 -YVKPDEITV-SILEELLNKDENCHECMNLLPSFLSRN 523
             +K  E+ +  ++E  +N D + + CM  +  F+S++
Sbjct: 671 NQMKEAEVVLRKMIERGVNPDRSTYTCM--INGFVSQD 706



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 118/433 (27%), Positives = 191/433 (44%), Gaps = 56/433 (12%)

Query: 91  NSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILR 150
           N+L+G+L    +      + + ++  G+  +  +LNI++N  CK   +      L ++  
Sbjct: 204 NALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQE 263

Query: 151 KVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDG 210
           K   PD+VT   LI     +G   EA  L              P V  Y ++I+GLCK G
Sbjct: 264 KGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPG----KGFSPGVYTYNTVINGLCKHG 319

Query: 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGE 270
              + + +F +M   G+ PD+  Y SL+   C        KG+    +E  + F +    
Sbjct: 320 KYERAKEVFAEMLRSGLSPDSTTYRSLLMEAC-------KKGD---VVETEKVFSDMRSR 369

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
             V   PD++ + S+++   +   +DKA   F  +K  G+IPD V+Y+ LI GYC  G I
Sbjct: 370 DVV---PDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMI 426

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEA 390
             A  L   +  +GC  D  +YNT+++   K + + EA  L+ EM    + PD+      
Sbjct: 427 SVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDS------ 480

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
                          LT+   L+DG CK   L++A ELF+K+       +VVTY  ++ G
Sbjct: 481 -------------YTLTI---LIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDG 524

Query: 451 LCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCH 510
               G I+ A ++  DM  K        E+L         P  I+ SIL   L    +  
Sbjct: 525 FGKVGDIDTAKEIWADMVSK--------EIL---------PTPISYSILVNALCSKGHLA 567

Query: 511 ECMNLLPSFLSRN 523
           E   +    +S+N
Sbjct: 568 EAFRVWDEMISKN 580



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 145/316 (45%), Gaps = 19/316 (6%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           A+   N M+       + ++N++L  L  +K       L   +    L PD  +L IL++
Sbjct: 429 AMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILID 488

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
             CK+  + +A     ++  K    DVVT   L+ G    G    A  ++   V+     
Sbjct: 489 GHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVS----K 544

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
            ++P  I Y+ +++ LC  G + +   ++ +M  + I P   + NS+I+ YC + N  D 
Sbjct: 545 EILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASD- 603

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR-- 308
            G +     + E FV           PD +SY ++I    ++  + KA  L   M+    
Sbjct: 604 -GESFLEKMISEGFV-----------PDCISYNTLIYGFVREENMSKAFGLVKKMEEEQG 651

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G++PDV  Y+S++ G+C   ++ +A  +   +   G  PD S+Y  +IN +   + + EA
Sbjct: 652 GLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEA 711

Query: 369 LSLYGEMISMGVRPDN 384
             ++ EM+  G  PD+
Sbjct: 712 FRIHDEMLQRGFSPDD 727



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 106/449 (23%), Positives = 192/449 (42%), Gaps = 71/449 (15%)

Query: 105 NFICLSER-LNTIGL-LPDF----VSLNILMNCFCKMIGVSDAFVALGRILRK------- 151
           N + L +R ++ +G   P+F    +SL+ +++   +   +SDA   L R++R+       
Sbjct: 90  NDLTLGQRFVDQLGFHFPNFKHTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLE 149

Query: 152 -VFSPDVVTLGC---------LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYAS 201
            V S D     C         LIR      K  EA   FT       +   +    C A 
Sbjct: 150 IVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLREAHEAFT---LLRSKGFTVSIDACNA- 205

Query: 202 IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261
           +I  L + G+V     ++ ++   G+  + +  N ++   C     +D K      +E  
Sbjct: 206 LIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALC-----KDGK------MEKV 254

Query: 262 EEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
             F++   E GV  +PD+++Y ++I++     L+++A EL   M  +G  P V  Y+++I
Sbjct: 255 GTFLSQVQEKGV--YPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVI 312

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
           +G C  G+ + A+++F  +   G  PD+++Y +L+    K   V E   ++ +M S  V 
Sbjct: 313 NGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVV 372

Query: 382 PDNSCILEAAELFRTLHNTKFEL-------------DLTVFNCLVDGLCKSWRLRSAWEL 428
           PD  C      LF    N    L             D  ++  L+ G C+   +  A  L
Sbjct: 373 PDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNL 432

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------K 470
             ++ + G   +VVTY  ++ GLC    + +A  L  +M E                  K
Sbjct: 433 RNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCK 492

Query: 471 IRECLKAIELLHKMAKRYVKPDEITVSIL 499
           +     A+EL  KM ++ ++ D +T + L
Sbjct: 493 LGNLQNAMELFQKMKEKRIRLDVVTYNTL 521


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 111/409 (27%), Positives = 185/409 (45%), Gaps = 49/409 (11%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           +P   ++++L+      + +     L + +   G++P     N ++   C    V  A V
Sbjct: 30  SPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALV 89

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
              R +++  +P V+T   L+  LC   + ++AS +    +   C PNV+     Y ++I
Sbjct: 90  HY-RDMQRHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVT----YNTLI 144

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
           +G CK G +++  VLF  M      PD F YN LI  YC     +D        ++   E
Sbjct: 145 NGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCE 204

Query: 264 --FVNGNGELGVI--------------------CHPDVLSYCSIINSLCKDVLVDKAKEL 301
             F+  N  +  +                    C P   ++  +I+  CK   +D A EL
Sbjct: 205 PNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYEL 264

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F  M  RG +PD+  Y+ +I G C   RIDDAR+L   +   GC PD  +YN++++   K
Sbjct: 265 FQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCK 324

Query: 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
             +V+EA                       E++  L N  + LD+   + L+DGLCKS R
Sbjct: 325 ASQVDEAY----------------------EVYEVLRNGGYFLDVVTCSTLIDGLCKSRR 362

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           L  A +L +++ R G  P+VV YT++I G C    ++K+     +M +K
Sbjct: 363 LDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDK 411



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/415 (27%), Positives = 183/415 (44%), Gaps = 72/415 (17%)

Query: 53  LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSER 112
           ++K L +N +     ++ AL  +  M      P + ++  L+ AL       +   + E 
Sbjct: 74  IIKGLCDNGR-----VDSALVHYRDM-QRHCAPSVITYTILVDALCKSARISDASLILED 127

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +   G  P+ V+ N L+N FCK+  + +A V   ++L    SPDV T   LI G C Q +
Sbjct: 128 MIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQER 187

Query: 173 FTEASGLFTKFVAFDCRPNVI-------------------------------PNVICYAS 201
             + + L  + V + C PN I                               P+   +  
Sbjct: 188 PQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNL 247

Query: 202 IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261
           +ID  CK G ++    LF  M  RG  PD + YN +I   C A   +DA+       +L 
Sbjct: 248 MIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDAR-------QLL 300

Query: 262 EEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
           E            C PDV++Y SI++ LCK   VD+A E++  +++ G   DVV  S+LI
Sbjct: 301 ERMTEAG------CPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLI 354

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
           DG C   R+DDA KL   +E  G  PD  +Y  LI+ + K ++++++L+ + EM+  G  
Sbjct: 355 DGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCV 414

Query: 382 PDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
           P                       +  ++ ++D LCKS R+R    L K +   G
Sbjct: 415 P----------------------TVITYSIVIDKLCKSARVRDGCMLLKTMLERG 447



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 153/321 (47%), Gaps = 31/321 (9%)

Query: 162 CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD 221
           CL+     + K  EA  LF   +   C P+ I     Y+++I+G CK     +   L  +
Sbjct: 3   CLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSIT----YSTLINGFCKARDFQQAYRLLDE 58

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
           M+ RGI P   VYN++I+  C         G   +AL  + +           C P V++
Sbjct: 59  MEKRGIVPHNAVYNTIIKGLC-------DNGRVDSALVHYRDMQRH-------CAPSVIT 104

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y  ++++LCK   +  A  +  DM   G  P+VV Y++LI+G+C +G +D+A  LF  + 
Sbjct: 105 YTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQML 164

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCI---------L 388
              C PD  +YN LI+ Y K E+ ++   L  EM+  G  P+    N+ +         +
Sbjct: 165 ENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYI 224

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
           +A  L + +     +     FN ++D  CK  +L  A+ELF+ +   G  P++ TY +MI
Sbjct: 225 DAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMI 284

Query: 449 CGLCIEGGIEKAYDLLPDMEE 469
            G C    I+ A  LL  M E
Sbjct: 285 SGACRANRIDDARQLLERMTE 305


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 112/453 (24%), Positives = 209/453 (46%), Gaps = 59/453 (13%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           ++G+ E   A+   + M+     P + ++NS+L  L     +     + + ++  G+ PD
Sbjct: 203 RAGDAEA--AMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPD 260

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG--- 178
             S  IL+  FC++  + +A      +  +   PD+V+  CLI     +GK   A     
Sbjct: 261 VRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLR 320

Query: 179 ------------LFTKFVAFDCRPNV----------------IPNVICYASIIDGLCKDG 210
                       ++T  +   CR  +                +P+V+ Y ++++GLCK+ 
Sbjct: 321 EMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKER 380

Query: 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGE 270
            +     L  +M+ RG+ PD   + +LI  YC        +G    AL+L +  +N    
Sbjct: 381 RLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCI-------EGKLDKALQLFDTMLNQR-- 431

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
                 PD+++Y ++I+ +C+   +DKA +L+ DM SR I P+ V YS LID +C  G++
Sbjct: 432 ----LRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQV 487

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSC 386
           +DA      + ++G +P+  +YN++I  Y +   V +      +M+   V PD    N+ 
Sbjct: 488 EDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTL 547

Query: 387 IL---------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
           I          +A +L   +   K + D+  +N L++G      ++ A  +F+K+   G 
Sbjct: 548 IHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGI 607

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           EP+  TY  MI G    G  ++A+ L  +M ++
Sbjct: 608 EPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQR 640



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/424 (26%), Positives = 191/424 (45%), Gaps = 48/424 (11%)

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           +LNI+++ +CK +        +  + ++   PDVVT   ++      G    A  L    
Sbjct: 158 TLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSM 217

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
           V+      + P ++ Y S++ GLC+ G  +K   +F +M   G+ PD   +  LI  +C 
Sbjct: 218 VS----KGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCR 273

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                   G    AL++++E  +          PD++S+  +I    +   +D A     
Sbjct: 274 V-------GEIEEALKIYKEMRHRG------IKPDLVSFSCLIGLFARRGKMDHAMAYLR 320

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
           +M+  G++PD V+Y+ +I G+C  G + DA ++   +   GC+PD  +YNTL+N   K  
Sbjct: 321 EMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKER 380

Query: 364 KVEEALSLYGEMISMGVRPD---------NSCIL----EAAELFRTLHNTKFELDLTVFN 410
           ++ +A  L  EM   GV PD           CI     +A +LF T+ N +   D+  +N
Sbjct: 381 RLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYN 440

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            L+DG+C+   L  A +L+  +      PN VTY+++I   C +G +E A+  L +M  K
Sbjct: 441 TLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINK 500

Query: 471 ------------------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHEC 512
                                  K  + L KM    V PD IT + L     K++  H+ 
Sbjct: 501 GILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDA 560

Query: 513 MNLL 516
             LL
Sbjct: 561 FKLL 564



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 110/462 (23%), Positives = 206/462 (44%), Gaps = 84/462 (18%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           + PD V+ N++++   +      A   +  ++ K   P +VT   +++GLC  G + +A 
Sbjct: 187 VFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAW 246

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            +F +   F     V P+V  +  +I G C+ G + +   ++ +M+ RGI PD   ++ L
Sbjct: 247 EVFKEMDDF----GVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCL 302

Query: 238 IRVYCCAVNWEDA----------------------------KGNTSAALELHEEFVNGNG 269
           I ++      + A                             G  S AL + +E V    
Sbjct: 303 IGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMV---- 358

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
             G  C PDV++Y +++N LCK+  +  A+ L  +M+ RG+ PD+  +++LI GYC+ G+
Sbjct: 359 --GCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGK 416

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE 389
           +D A +LF ++ ++   PD  +YNTLI+   +   +++A  L+ +M S  + P++     
Sbjct: 417 LDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNH----- 471

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
                              ++ L+D  C+  ++  A+    ++   G  PN++TY  +I 
Sbjct: 472 -----------------VTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIK 514

Query: 450 GLCIEGGIEKAYDLL---------PDM------------EEKIRECLKAIELLHKMAKRY 488
           G C  G + K    L         PD+            E+K+ +  K   LL+ M K  
Sbjct: 515 GYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFK---LLNMMEKEK 571

Query: 489 VKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           V+PD +T ++L    +   N  E   +     ++  E  + T
Sbjct: 572 VQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYT 613



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 155/318 (48%), Gaps = 19/318 (5%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++DAL   + M+     P + ++N+LL  L  ++  ++   L   +   G+ PD  +   
Sbjct: 347 MSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTT 406

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++ +C    +  A      +L +   PD+VT   LI G+C QG   +A+ L+    + +
Sbjct: 407 LIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSRE 466

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               + PN + Y+ +ID  C+ G V        +M  +GI P+   YNS+I+ YC     
Sbjct: 467 ----IFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYC----- 517

Query: 248 EDAKGNTSAALE-LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
               GN S   + L +  VN          PD+++Y ++I+   K+  +  A +L   M+
Sbjct: 518 --RSGNVSKGQKFLQKMMVNK-------VSPDLITYNTLIHGYIKEDKMHDAFKLLNMME 568

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
              + PDVV Y+ LI+G+ + G + +A  +F  + ++G  PD  +Y ++IN +      +
Sbjct: 569 KEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSK 628

Query: 367 EALSLYGEMISMGVRPDN 384
           EA  L+ EM+  G  PD+
Sbjct: 629 EAFQLHDEMLQRGFAPDD 646


>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
 gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
          Length = 353

 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 107/348 (30%), Positives = 165/348 (47%), Gaps = 30/348 (8%)

Query: 133 CKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNV 192
           CK  G   A   L  +  K  +PD+VT   ++ G+C +G+  +A        ++ C PN 
Sbjct: 3   CKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNT 62

Query: 193 IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252
           +     Y  ++ GLC          L  +M  +G  P+   +N LI   C        KG
Sbjct: 63  VS----YNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLC-------RKG 111

Query: 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
               ALE+ E+           C P+ LSY  ++++ CK   +DKA      M SRG  P
Sbjct: 112 LVEPALEVLEQIPKYG------CTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYP 165

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
           D+V Y++L+   C  G +D A +L   ++ +GC P   SYNT+I+  +K  K +EAL L 
Sbjct: 166 DIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELL 225

Query: 373 GEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            EM+S G++PD                I +A   F  + +     +  ++N ++ GLCK 
Sbjct: 226 NEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKR 285

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
               SA +LF  +   G  PN  TYT++I GL  EG I++A DLL ++
Sbjct: 286 RETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDEL 333



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 147/317 (46%), Gaps = 19/317 (5%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
            A+   + M     TP + ++N ++  +  +    + I   + L + G  P+ VS NI++
Sbjct: 10  QAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVL 69

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
              C      DA   +G + +K   P+VVT   LI  LC +G    A  +  +   + C 
Sbjct: 70  KGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCT 129

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLD-MKGRGIYPDAFVYNSLIRVYCCAVNWE 248
           PN +     Y  ++   CK   ++K  + FLD M  RG YPD   YN+L+   C      
Sbjct: 130 PNSLS----YNPLLHAFCKQKKMDKA-MAFLDLMVSRGCYPDIVSYNTLLTALC------ 178

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
              G    A+EL  +  +        C P ++SY ++I+ L K     +A EL  +M S+
Sbjct: 179 -RSGEVDVAVELLHQLKDKG------CAPVLISYNTVIDGLTKAGKTKEALELLNEMVSK 231

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G+ PD++ YS++  G C   RI+DA + F  ++  G  P+T  YN +I    K  +   A
Sbjct: 232 GLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSA 291

Query: 369 LSLYGEMISMGVRPDNS 385
           + L+  MI  G  P+ S
Sbjct: 292 IDLFAYMIGNGCMPNES 308



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 145/321 (45%), Gaps = 17/321 (5%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N    E  ++DA+ F   +      P   S+N +L  L   + + +   L   +   G  
Sbjct: 35  NGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCP 94

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ V+ N+L++  C+   V  A   L +I +   +P+ ++   L+   C Q K  +A   
Sbjct: 95  PNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAF 154

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
               V+  C P+++     Y +++  LC+ G V+    L   +K +G  P    YN++I 
Sbjct: 155 LDLMVSRGCYPDIVS----YNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVI- 209

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
                 +     G T  ALEL  E V+          PD+++Y +I   LC++  ++ A 
Sbjct: 210 ------DGLTKAGKTKEALELLNEMVSKG------LQPDIITYSTIAAGLCREDRIEDAI 257

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
             F  ++  GI P+ V+Y+++I G C       A  LF  +   GC+P+ S+Y  LI   
Sbjct: 258 RAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGL 317

Query: 360 SKIEKVEEALSLYGEMISMGV 380
           +    ++EA  L  E+ S GV
Sbjct: 318 AYEGLIKEARDLLDELCSRGV 338



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 138/307 (44%), Gaps = 52/307 (16%)

Query: 207 CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266
           CK     +   L  +M+ +G  PD   YN ++   C     +DA            EF+ 
Sbjct: 3   CKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAI-----------EFLK 51

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
                G  C P+ +SY  ++  LC     + A+EL  +M  +G  P+VV ++ LI   C 
Sbjct: 52  NLPSYG--CEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCR 109

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC 386
            G ++ A ++   I   GC P++ SYN L++++ K +K+++A++    M+S G  PD   
Sbjct: 110 KGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPD--- 166

Query: 387 ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTV 446
                              +  +N L+  LC+S  +  A EL  +L   G  P +++Y  
Sbjct: 167 -------------------IVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNT 207

Query: 447 MICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
           +I GL   G              K +E   A+ELL++M  + ++PD IT S +   L ++
Sbjct: 208 VIDGLTKAG--------------KTKE---ALELLNEMVSKGLQPDIITYSTIAAGLCRE 250

Query: 507 ENCHECM 513
           +   + +
Sbjct: 251 DRIEDAI 257



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 120/261 (45%), Gaps = 40/261 (15%)

Query: 288 SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
           + CK     +A +L  +M+ +G  PD+V Y+ +++G C  GR+DDA +   ++ S GC P
Sbjct: 1   ATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEP 60

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLT 407
           +T SYN ++      E+ E+A  L GEM   G  P+                      + 
Sbjct: 61  NTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPN----------------------VV 98

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL--- 464
            FN L+  LC+   +  A E+ +++P+YG  PN ++Y  ++   C +  ++KA   L   
Sbjct: 99  TFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLM 158

Query: 465 ------PDMEE---------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENC 509
                 PD+           +  E   A+ELLH++  +   P  I+ + + + L K    
Sbjct: 159 VSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKT 218

Query: 510 HECMNLLPSFLSRNQEESKLT 530
            E + LL   +S+  +   +T
Sbjct: 219 KEALELLNEMVSKGLQPDIIT 239



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 118/262 (45%), Gaps = 17/262 (6%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + +FN L+  L  K      + + E++   G  P+ +S N L++ FCK   +  A   
Sbjct: 95  PNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAF 154

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           L  ++ +   PD+V+   L+  LC  G+   A  L  +     C P +I     Y ++ID
Sbjct: 155 LDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLIS----YNTVID 210

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           GL K G   +   L  +M  +G+ PD   Y+++    C     EDA     A  ++ +  
Sbjct: 211 GLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDA---IRAFGKVQD-- 265

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
                 +G+   P+ + Y +II  LCK      A +LF  M   G +P+   Y+ LI+G 
Sbjct: 266 ------MGI--RPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGL 317

Query: 325 CLMGRIDDARKLFVSIESEGCI 346
              G I +AR L   + S G +
Sbjct: 318 AYEGLIKEARDLLDELCSRGVV 339



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 81/179 (45%), Gaps = 6/179 (3%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           +SGEV++  A+   + +      P + S+N+++  L         + L   + + GL PD
Sbjct: 179 RSGEVDV--AVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPD 236

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            ++ + +    C+   + DA  A G++      P+ V    +I GLC + +   A  LF 
Sbjct: 237 IITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFA 296

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
             +   C    +PN   Y  +I+GL  +G + + R L  ++  RG+   + +    IR+
Sbjct: 297 YMIGNGC----MPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVVRKSLINKGAIRL 351


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 123/451 (27%), Positives = 202/451 (44%), Gaps = 49/451 (10%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           S+N LL  LA      +       +   G +P+  +   L+   C+     +A      +
Sbjct: 19  SYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGM 78

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
             +  SP+V +   LI GLC   K  EA+ L  + +    +PNV+     Y S++ GLCK
Sbjct: 79  AAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVT----YGSLLSGLCK 134

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
            G + +   LF  M  RG  PD  VYN LI  +         KG+   A  L EE +   
Sbjct: 135 MGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGF-------SKKGDMGEAYRLFEEMLEKG 187

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                 C P V +Y S+++   +     + + LF DM  +G +P++  +++L+DG+C MG
Sbjct: 188 ------CIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMG 241

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----- 383
            + +A +LF+ + S GC PD  SYNTL+       K  EA  L  EMI  GV PD     
Sbjct: 242 DMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYN 301

Query: 384 --------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
                   +  +  A +LF  +  +  E D   ++ ++D LC++ ++ +A+ +FK +   
Sbjct: 302 ILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIAN 361

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKA 477
           G  P+      ++ GLC    + ++ +L   M +                  K +     
Sbjct: 362 GSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDV 421

Query: 478 IELLHKMAKRYVKPD-EITVSILEELLNKDE 507
            E+ H++ +R   PD EI+  ILE L   D+
Sbjct: 422 CEIFHELTERGFSPDVEISKVILETLRRSDD 452



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 154/340 (45%), Gaps = 44/340 (12%)

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
             + Y  +++ L K G  + V   + DM G G  P+ + Y  L+R  C A  +E+A+   
Sbjct: 16  GTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEAR--- 72

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
                       G    G  C P+V SY  +I  LC+   VD+A EL  +M   G  P+V
Sbjct: 73  --------SVFRGMAAQG--CSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNV 122

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           V Y SL+ G C MG++ +A  LF  +   GC PD   YN LI+ +SK   + EA  L+ E
Sbjct: 123 VTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEE 182

Query: 375 MISMGVRPD----NSCIL---------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
           M+  G  P     NS +              LF+ +       ++  FN L+DG CK   
Sbjct: 183 MLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGD 242

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA------------------YDL 463
           +  A  LF ++   G  P+VV+Y  ++ G+C +G   +A                  Y++
Sbjct: 243 MVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNI 302

Query: 464 LPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELL 503
           L D   K      AI+L +++ K  ++PD  + S + + L
Sbjct: 303 LIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCL 342



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 167/382 (43%), Gaps = 39/382 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++++A    N MI     P + ++ SLL  L         + L  R+   G  PD V  N
Sbjct: 102 KVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYN 161

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +L++ F K   + +A+     +L K   P V T   L+ G   +G+F     LF   +  
Sbjct: 162 VLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDML-- 219

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             R   +PN+  + +++DG CK G + +   LFL+M+  G  PD   YN+L+R  C    
Sbjct: 220 --RQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMC---- 273

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
              +KG    A  L  E +           PD++SY  +I+   K   +D A +LF ++ 
Sbjct: 274 ---SKGKPHEAQRLLREMIRSG------VGPDIVSYNILIDGYSKSGALDHAIKLFYEIP 324

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
             G+ PD   YS++ID  C  G++  A  +F  + + G  PD +    L+    + E++ 
Sbjct: 325 KSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLT 384

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           E+  L+  M+         C+    E                +N L+  LCK+ R     
Sbjct: 385 ESCELFQAMVKF------ECVPLIPE----------------YNLLMYKLCKAKRSDDVC 422

Query: 427 ELFKKLPRYGPEPNVVTYTVMI 448
           E+F +L   G  P+V    V++
Sbjct: 423 EIFHELTERGFSPDVEISKVIL 444



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 141/309 (45%), Gaps = 21/309 (6%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           SK G+  + +A   F  M+     P + ++NSLL   + K  +     L + +   G +P
Sbjct: 168 SKKGD--MGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVP 225

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           +  + N L++ FCKM  + +A      +      PDVV+   L+RG+C +GK  EA  L 
Sbjct: 226 NIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLL 285

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            + +    R  V P+++ Y  +IDG  K G ++    LF ++   G+ PDAF Y+++I  
Sbjct: 286 REMI----RSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDC 341

Query: 241 YCCAVNWEDAKGNTSAALELHEEFV-NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            C A       G   AA  + ++ + NG+        PD      ++  LC+   + ++ 
Sbjct: 342 LCRA-------GKVGAAFVVFKDMIANGSA-------PDAAVVIPLVIGLCRGERLTESC 387

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           ELF  M     +P +  Y+ L+   C   R DD  ++F  +   G  PD      ++ + 
Sbjct: 388 ELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETL 447

Query: 360 SKIEKVEEA 368
            + +  E A
Sbjct: 448 RRSDDKEAA 456


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 124/496 (25%), Positives = 212/496 (42%), Gaps = 75/496 (15%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           + N ++ AL   + + N +     +   G+  D V+ N L+N +C+   V +AF  L   
Sbjct: 259 TLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSF 318

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN----------------- 191
             +   P ++T   ++ GLC  GK+  A  +  + +     PN                 
Sbjct: 319 SSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNI 378

Query: 192 --------------VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
                         V+P+++ ++S+I  L ++G + +  + F +M+  GI PD  +Y  L
Sbjct: 379 LEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTIL 438

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           I  +C         G  S AL++ +E       L   C  DV++Y + +N LCK  +   
Sbjct: 439 IDGFC-------RNGALSDALKMRDEM------LARGCFMDVVTYNTFLNGLCKKKMFAD 485

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A  LF +M  RG++PD   +++LI GYC  G +D A  LF ++      PD  +YNTLI+
Sbjct: 486 ADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLID 545

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFEL 404
            + K  ++  A  L+ +MI   + PD+               + EA  L   +       
Sbjct: 546 GFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRP 605

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           +L   N L+ G C+S  +  A+E   K+   G  P+  +Y  +I G   E  +EKA+ L+
Sbjct: 606 NLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILI 665

Query: 465 PDMEEKIRE------------------CLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
            +ME++  +                    +A ++L KM +  + PD  T S L       
Sbjct: 666 NEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQ 725

Query: 507 ENCHECMNLLPSFLSR 522
           +N  E        L R
Sbjct: 726 DNMKEAFRFHDEMLQR 741



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 188/396 (47%), Gaps = 39/396 (9%)

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           F+ M      P + SF+SL+G LA   +    +     +   G++PD V   IL++ FC+
Sbjct: 385 FDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCR 444

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
              +SDA      +L +    DVVT    + GLC +  F +A  LF + V       ++P
Sbjct: 445 NGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMV----ERGMVP 500

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           +   + ++I G CKDG ++K   LF  M    + PD   YN+LI  +C A       G  
Sbjct: 501 DFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKA-------GEM 553

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
             A EL ++ +  +        PD +SY +++N  C   L+ +A  L   M  +GI P++
Sbjct: 554 GRAKELWDDMIRKD------IIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNL 607

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           V  ++LI GYC  G +  A +    + S G IPD+ SYNTLI+ Y K   +E+A  L  E
Sbjct: 608 VTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINE 667

Query: 375 MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
           M   G+                      + ++  +N +++G C   +++ A ++ +K+  
Sbjct: 668 MEKRGL----------------------QFNIITYNLILNGFCAEGKMQEAEQVLRKMIE 705

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            G  P+  TY+ +I G   +  +++A+    +M ++
Sbjct: 706 IGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQR 741



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 186/392 (47%), Gaps = 39/392 (9%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           M+ +  TP   ++N+LL  +  +   +    + + ++  G+LPD VS + L+    +   
Sbjct: 353 MLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGH 412

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           +  A +    + R    PD V    LI G C  G  ++A  +  + +A  C      +V+
Sbjct: 413 LYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGC----FMDVV 468

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            Y + ++GLCK        +LF +M  RG+ PD + + +LIR YC         GN   A
Sbjct: 469 TYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYC-------KDGNMDKA 521

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
           L L E  V  N        PD ++Y ++I+  CK   + +AKEL+ DM  + IIPD + Y
Sbjct: 522 LNLFEAMVRTN------LKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISY 575

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
            ++++G+C  G + +A  L   +  +G  P+  + NTLI  Y +   + +A     +MIS
Sbjct: 576 GTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMIS 635

Query: 378 MGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
            G+ PD+                        +N L+DG  K   L  A+ L  ++ + G 
Sbjct: 636 NGIIPDSFS----------------------YNTLIDGYLKEANLEKAFILINEMEKRGL 673

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           + N++TY +++ G C EG +++A  +L  M E
Sbjct: 674 QFNIITYNLILNGFCAEGKMQEAEQVLRKMIE 705



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 123/445 (27%), Positives = 206/445 (46%), Gaps = 48/445 (10%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+  +  +LNI++N  CK     +    L  +  K    D+VT   LI   C +G   EA
Sbjct: 252 GIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEA 311

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L   F +      + P ++ Y +I+ GLCK G  ++ + + ++M   G+ P+A  YN+
Sbjct: 312 FQLLNSFSS----RGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNT 367

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           L+   C        + N   A E+ +E        GV+  PD++S+ S+I  L ++  + 
Sbjct: 368 LLVEIC-------RRDNILEAQEIFDEM----SRRGVL--PDLVSFSSLIGVLARNGHLY 414

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A   F +M+  GI+PD V+Y+ LIDG+C  G + DA K+   + + GC  D  +YNT +
Sbjct: 415 QALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFL 474

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFE 403
           N   K +   +A  L+ EM+  G+ PD             +  + +A  LF  +  T  +
Sbjct: 475 NGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLK 534

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D   +N L+DG CK+  +  A EL+  + R    P+ ++Y  ++ G C  G + +A +L
Sbjct: 535 PDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNL 594

Query: 464 LPDMEEK-IRECL-----------------KAIELLHKMAKRYVKPDEITVSILEELLNK 505
              M EK IR  L                 KA E L KM    + PD  + + L +   K
Sbjct: 595 CDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLK 654

Query: 506 DENCHECMNLLPSFLSRNQEESKLT 530
           + N  +   L+     R  + + +T
Sbjct: 655 EANLEKAFILINEMEKRGLQFNIIT 679



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 159/317 (50%), Gaps = 17/317 (5%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+DAL   + M+       + ++N+ L  L  KK + +   L   +   G++PDF +   
Sbjct: 448 LSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTT 507

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+  +CK   +  A      ++R    PD VT   LI G C  G+   A  L+   +   
Sbjct: 508 LIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMI--- 564

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            R ++IP+ I Y ++++G C  G + +   L   M  +GI P+    N+LI+ YC     
Sbjct: 565 -RKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYC----- 618

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               G+   A E   + ++     G+I  PD  SY ++I+   K+  ++KA  L  +M+ 
Sbjct: 619 --RSGDMPKAYEYLSKMISN----GII--PDSFSYNTLIDGYLKEANLEKAFILINEMEK 670

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           RG+  +++ Y+ +++G+C  G++ +A ++   +   G  PD ++Y++LIN +   + ++E
Sbjct: 671 RGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKE 730

Query: 368 ALSLYGEMISMGVRPDN 384
           A   + EM+  G+ PD+
Sbjct: 731 AFRFHDEMLQRGLVPDD 747



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 90/381 (23%), Positives = 169/381 (44%), Gaps = 47/381 (12%)

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           L+R      K  E S  F        R  V  ++     ++ GL + G+V+    ++ ++
Sbjct: 193 LVRTYVQAKKLREGSEAFQILR----RKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEV 248

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
              GI  + +  N ++   C    +E+     S         + G G        D+++Y
Sbjct: 249 VRGGIELNVYTLNIMVNALCKDRKFENVMFFLSD--------MEGKG-----VFADIVTY 295

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
            ++IN+ C++ LV++A +L     SRG+ P ++ Y++++ G C +G+ D A+ + + +  
Sbjct: 296 NTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQ 355

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILE 389
            G  P+ ++YNTL+    + + + EA  ++ EM   GV PD             N  + +
Sbjct: 356 LGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQ 415

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
           A   FR +  +    D  ++  L+DG C++  L  A ++  ++   G   +VVTY   + 
Sbjct: 416 ALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLN 475

Query: 450 GLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENC 509
           GLC +     A     DM            L ++M +R + PD  T + L     KD N 
Sbjct: 476 GLCKKKMFADA-----DM------------LFNEMVERGMVPDFYTFTTLIRGYCKDGNM 518

Query: 510 HECMNLLPSFLSRNQEESKLT 530
            + +NL  + +  N +  K+T
Sbjct: 519 DKALNLFEAMVRTNLKPDKVT 539



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 83/200 (41%), Gaps = 11/200 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E+  A   ++ MI     P   S+ ++L            + L +++   G+ P+ V+ N
Sbjct: 552 EMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCN 611

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+  +C+   +  A+  L +++     PD  +   LI G   +    +A  L  +    
Sbjct: 612 TLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEME-- 669

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             +  +  N+I Y  I++G C +G + +   +   M   GI PD   Y+SLI       N
Sbjct: 670 --KRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLI-------N 720

Query: 247 WEDAKGNTSAALELHEEFVN 266
              ++ N   A   H+E + 
Sbjct: 721 GHVSQDNMKEAFRFHDEMLQ 740


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 126/426 (29%), Positives = 197/426 (46%), Gaps = 58/426 (13%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD  + N +++  C+   + +A   L R+L + FS D +T G L+ GLC  G+  EA  L
Sbjct: 273 PDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARAL 332

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVR-VLFLDMKGRGIYPDAFVYNSLI 238
             K       PN  PN + Y ++I G    G   + + +L+ +M   G  PDA+ +N +I
Sbjct: 333 LNKI------PN--PNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMI 384

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
                  +    KG   +ALEL  E V    E      P+V++Y  +IN  CK   +++A
Sbjct: 385 -------DGLVKKGYLVSALELLNEMVAKRFE------PNVITYTILINGFCKQGRLEEA 431

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
            E+   M ++G+  + V Y+ LI   C  G I++A +LF  +  +GC PD  ++N+LIN 
Sbjct: 432 AEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLING 491

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSC--ILEAAELFRTLHNTKFE-----------LD 405
             K  K+EEALSLY +M   GV  +      L  A L R      F+           LD
Sbjct: 492 LCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLD 551

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
              +N L+  LCK+  +     LF+++   G  P +++  ++I GLC  G +  A   L 
Sbjct: 552 NITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQ 611

Query: 466 DMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDE 507
           DM                    K+    +A  L +K+    ++PD IT + L        
Sbjct: 612 DMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTL-----ISR 666

Query: 508 NCHECM 513
           +CHE M
Sbjct: 667 HCHEGM 672



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 136/492 (27%), Positives = 209/492 (42%), Gaps = 84/492 (17%)

Query: 53  LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSER 112
           L+  L EN++  E     AL     M  M   P + +FN ++  L           L +R
Sbjct: 246 LIHALCENNRVSE-----ALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDR 300

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDA---------------------FVALGR---- 147
           +   G   D ++   LM+  C+M  V +A                     +VA GR    
Sbjct: 301 MLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPNPNTVLYNTLISGYVASGRFEEA 360

Query: 148 -------ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200
                  ++   + PD  T   +I GL  +G    A  L  + VA        PNVI Y 
Sbjct: 361 KDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVA----KRFEPNVITYT 416

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL 260
            +I+G CK G + +   +   M  +G+  +   YN LI   C         GN   AL+L
Sbjct: 417 ILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALC-------KDGNIEEALQL 469

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
             E ++G G     C PD+ ++ S+IN LCK+  +++A  L+ DM   G+I + V Y++L
Sbjct: 470 FGE-MSGKG-----CKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTL 523

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           +  + +   I  A KL   +   GC  D  +YN LI +  K   VE+ L L+ EM+  G+
Sbjct: 524 VHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGI 583

Query: 381 RPDN-SC------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
            P   SC            + +A +  + + +     D+  +N L++GLCK   ++ A  
Sbjct: 584 FPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASN 643

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKR 487
           LF KL   G  P+ +TY  +I   C EG    A             CL    LL+K    
Sbjct: 644 LFNKLQSEGIRPDAITYNTLISRHCHEGMFNDA-------------CL----LLYKGVDS 686

Query: 488 YVKPDEITVSIL 499
              P+E+T SIL
Sbjct: 687 GFIPNEVTWSIL 698



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 169/375 (45%), Gaps = 39/375 (10%)

Query: 74  FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
            +N M+     P   +FN ++  L  K Y V+ + L   +      P+ ++  IL+N FC
Sbjct: 364 LYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFC 423

Query: 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
           K   + +A   +  +  K  S + V   CLI  LC  G   EA  LF +     C+P++ 
Sbjct: 424 KQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIY 483

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
                + S+I+GLCK+  + +   L+ DM   G+  +   YN+L+  +         + +
Sbjct: 484 T----FNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFL-------MRDS 532

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
              A +L +E +         C  D ++Y  +I +LCK   V+K   LF +M  +GI P 
Sbjct: 533 IQQAFKLVDEMLFRG------CPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPT 586

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           ++  + LI G C  G+++DA K    +   G  PD  +YN+LIN   K+  V+EA +L+ 
Sbjct: 587 IISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFN 646

Query: 374 EMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
           ++ S G+RPD                         +N L+   C       A  L  K  
Sbjct: 647 KLQSEGIRPDA----------------------ITYNTLISRHCHEGMFNDACLLLYKGV 684

Query: 434 RYGPEPNVVTYTVMI 448
             G  PN VT++++I
Sbjct: 685 DSGFIPNEVTWSILI 699



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 166/351 (47%), Gaps = 42/351 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G +P+ V    L++  C+   VS+A   L  +      PDV T   +I GLC  G+  EA
Sbjct: 235 GCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEA 294

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
           + L  + +          + + Y  ++ GLC+ G V++ R L   +      P+  +YN+
Sbjct: 295 AKLLDRMLL----RGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPN----PNTVLYNT 346

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI  Y  +  +E+AK        L+   V    E      PD  ++  +I+ L K   + 
Sbjct: 347 LISGYVASGRFEEAKD------LLYNNMVIAGYE------PDAYTFNIMIDGLVKKGYLV 394

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A EL  +M ++   P+V+ Y+ LI+G+C  GR+++A ++  S+ ++G   +T  YN LI
Sbjct: 395 SALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLI 454

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
            +  K   +EEAL L+GEM   G +PD                      +  FN L++GL
Sbjct: 455 CALCKDGNIEEALQLFGEMSGKGCKPD----------------------IYTFNSLINGL 492

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           CK+ ++  A  L+  +   G   N VTY  ++    +   I++A+ L+ +M
Sbjct: 493 CKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEM 543



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 133/293 (45%), Gaps = 31/293 (10%)

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
           V P V  +  ++  LC    V+    L  DM   G  P++ +Y +LI   C         
Sbjct: 201 VSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALC-------EN 253

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
              S AL+L E+         + C PDV ++  +I+ LC+   + +A +L   M  RG  
Sbjct: 254 NRVSEALQLLEDM------FLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFS 307

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
            D + Y  L+ G C MG++D+AR L   I +    P+T  YNTLI+ Y    + EEA  L
Sbjct: 308 TDALTYGYLMHGLCRMGQVDEARALLNKIPN----PNTVLYNTLISGYVASGRFEEAKDL 363

Query: 372 -YGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
            Y  M+  G  PD                ++ A EL   +   +FE ++  +  L++G C
Sbjct: 364 LYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFC 423

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           K  RL  A E+   +   G   N V Y  +IC LC +G IE+A  L  +M  K
Sbjct: 424 KQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGK 476



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/384 (26%), Positives = 169/384 (44%), Gaps = 37/384 (9%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P F S N++++          A      +L +  SP V T G +++ LCM  +   A  L
Sbjct: 168 PTFKSYNVVLDILVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSL 227

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
                   C    +PN + Y ++I  LC++  V++   L  DM      PD   +N +I 
Sbjct: 228 LRDMAKHGC----VPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIH 283

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C A    +A      A  L    + G          D L+Y  +++ LC+   VD+A+
Sbjct: 284 GLCRAGRIHEA------AKLLDRMLLRG-------FSTDALTYGYLMHGLCRMGQVDEAR 330

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL-FVSIESEGCIPDTSSYNTLINS 358
            L   + +    P+ V+Y++LI GY   GR ++A+ L + ++   G  PD  ++N +I+ 
Sbjct: 331 ALLNKIPN----PNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDG 386

Query: 359 YSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELD 405
             K   +  AL L  EM++    P+                + EAAE+  ++      L+
Sbjct: 387 LVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLN 446

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
              +NCL+  LCK   +  A +LF ++   G +P++ T+  +I GLC    +E+A  L  
Sbjct: 447 TVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYH 506

Query: 466 DM--EEKIRECLKAIELLHKMAKR 487
           DM  E  I   +    L+H    R
Sbjct: 507 DMFLEGVIANTVTYNTLVHAFLMR 530



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 135/325 (41%), Gaps = 44/325 (13%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L  AL   N M+  +  P + ++  L+     +        +   ++  GL  + V  N 
Sbjct: 393 LVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNC 452

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF------- 180
           L+   CK   + +A    G +  K   PD+ T   LI GLC   K  EA  L+       
Sbjct: 453 LICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEG 512

Query: 181 ---------TKFVAFDCRPNVIP---------------NVICYASIIDGLCKDGFVNKVR 216
                    T   AF  R ++                 + I Y  +I  LCK G V K  
Sbjct: 513 VIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGL 572

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            LF +M G+GI+P     N LI   C         G  + AL+  ++ ++          
Sbjct: 573 GLFEEMLGKGIFPTIISCNILISGLC-------RTGKVNDALKFLQDMIHRG------LT 619

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PD+++Y S+IN LCK   V +A  LF  ++S GI PD + Y++LI  +C  G  +DA  L
Sbjct: 620 PDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHEGMFNDACLL 679

Query: 337 FVSIESEGCIPDTSSYNTLINSYSK 361
                  G IP+  +++ LIN   K
Sbjct: 680 LYKGVDSGFIPNEVTWSILINYIVK 704



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 115/262 (43%), Gaps = 46/262 (17%)

Query: 275 CHPDVLSYCSIINSLCKDVLVDK-----AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
           C P   SY  ++     D+LVD      A  +F DM SRG+ P V  +  ++   C++  
Sbjct: 166 CDPTFKSYNVVL-----DILVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSE 220

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC--- 386
           +D A  L   +   GC+P++  Y TLI++  +  +V EAL L  +M  M   PD      
Sbjct: 221 VDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFND 280

Query: 387 ----------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
                     I EAA+L   +    F  D   +  L+ GLC+  ++  A  L  K+P   
Sbjct: 281 VIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPN-- 338

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLL----------PDMEE---------KIRECLKA 477
             PN V Y  +I G    G  E+A DLL          PD            K    + A
Sbjct: 339 --PNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSA 396

Query: 478 IELLHKMAKRYVKPDEITVSIL 499
           +ELL++M  +  +P+ IT +IL
Sbjct: 397 LELLNEMVAKRFEPNVITYTIL 418



 Score = 46.2 bits (108), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 2/103 (1%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           ++G+V  NDAL F   MIH   TP + ++NSL+  L    +      L  +L + G+ PD
Sbjct: 599 RTGKV--NDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPD 656

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLI 164
            ++ N L++  C     +DA + L + +   F P+ VT   LI
Sbjct: 657 AITYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEVTWSILI 699



 Score = 43.1 bits (100), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 86/233 (36%), Gaps = 40/233 (17%)

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES-EGCIPDTSSYNTLIN 357
           ++L   MK  G++    ++  ++  Y   G    A +L + +     C P   SYN +++
Sbjct: 119 EKLLKQMKDEGLLFKESLFILIMKHYGKAGLPGQATRLLLDMWGVYSCDPTFKSYNVVLD 178

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
                +    A +++ +M+S GV P                       +  F  ++  LC
Sbjct: 179 ILVDGDCPRVAPNVFYDMLSRGVSPT----------------------VYTFGVVMKALC 216

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKA 477
               + SA  L + + ++G  PN V Y  +I  LC    + +A  LL DM      C   
Sbjct: 217 MVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDM---FLMC--- 270

Query: 478 IELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
                       +PD  T + +   L +    HE   LL   L R      LT
Sbjct: 271 -----------CEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALT 312


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 118/390 (30%), Positives = 190/390 (48%), Gaps = 49/390 (12%)

Query: 148 ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207
           ++R+    +VVT   +I GLC  GKF +A  +     A+       P+VI Y +IIDG C
Sbjct: 220 MIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAW----GFSPSVITYNTIIDGYC 275

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
           K G + K   L  +M  + I+P+   +N LI  +C          N +AA ++ EE    
Sbjct: 276 KAGKMFKADALLKEMVAKRIHPNEITFNILIDGFC-------RDENVTAAKKVFEEMQRQ 328

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
                    P+V++Y S+IN LC +  +D+A  L   M   G+ P+VV Y++LI+G+C  
Sbjct: 329 G------LQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKK 382

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS-- 385
             + +AR++   I   G  P+  ++NTLI++Y K  ++++A  L   M+  GV P+ S  
Sbjct: 383 KMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTY 442

Query: 386 -CIL----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
            C++          EA +L + +     + DL  +N LVD LCK    R A  L  ++  
Sbjct: 443 NCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFE 502

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE-------------CLK----- 476
            G  P+ +TY  +I G   EG    A ++   ME+K R              C K     
Sbjct: 503 VGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEE 562

Query: 477 AIELLHKMAKRYVKPDEITVSIL-EELLNK 505
           A  LL++M ++ + P+  T  IL +E++ K
Sbjct: 563 ANRLLNEMLEKGLIPNRTTYDILRDEMMEK 592



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 171/360 (47%), Gaps = 39/360 (10%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           E +   G  P  ++ N +++ +CK   +  A   L  ++ K   P+ +T   LI G C  
Sbjct: 253 EDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRD 312

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
              T A  +F +      R  + PNV+ Y S+I+GLC +G +++   L   M G G+ P+
Sbjct: 313 ENVTAAKKVFEEMQ----RQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPN 368

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
              YN+LI  +C     ++A+           E ++  G+ G+   P+V+++ ++I++  
Sbjct: 369 VVTYNALINGFCKKKMLKEAR-----------EMLDDIGKRGLA--PNVITFNTLIDAYG 415

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K   +D A  L   M   G+ P+V  Y+ LI G+C  G + +ARKL   +E  G   D  
Sbjct: 416 KAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLV 475

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFN 410
           +YN L+++  K  +  +A+ L  EM  +G+ P +                        +N
Sbjct: 476 TYNILVDALCKKGETRKAVRLLDEMFEVGLNPSH----------------------LTYN 513

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            L+DG  +     +A  +   + + G   N+VTY V+I G C +G +E+A  LL +M EK
Sbjct: 514 ALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEK 573



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 166/372 (44%), Gaps = 46/372 (12%)

Query: 81  MQPTPFMPS---FNSLLGAL--AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKM 135
           M+   F PS   +N+++     AGK +  +   L + +    + P+ ++ NIL++ FC+ 
Sbjct: 255 MKAWGFSPSVITYNTIIDGYCKAGKMFKAD--ALLKEMVAKRIHPNEITFNILIDGFCRD 312

Query: 136 IGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPN 195
             V+ A      + R+   P+VVT   LI GLC  GK  EA GL  K      +    PN
Sbjct: 313 ENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLK----PN 368

Query: 196 VICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTS 255
           V+ Y ++I+G CK   + + R +  D+  RG+ P+   +N+LI  Y  A   +DA    S
Sbjct: 369 VVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRS 428

Query: 256 AALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV 315
             L+              +C P+V +Y  +I   C++  V +A++L  +M+  G+  D+V
Sbjct: 429 MMLDTG------------VC-PNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLV 475

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
            Y+ L+D  C  G    A +L   +   G  P   +YN LI+ Y +      AL++   M
Sbjct: 476 TYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLM 535

Query: 376 ISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
              G R                       ++  +N L+ G C   +L  A  L  ++   
Sbjct: 536 EKKGRRA----------------------NIVTYNVLIKGFCNKGKLEEANRLLNEMLEK 573

Query: 436 GPEPNVVTYTVM 447
           G  PN  TY ++
Sbjct: 574 GLIPNRTTYDIL 585



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 148/335 (44%), Gaps = 54/335 (16%)

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL--IRVYCCA----- 244
            I NV  +  ++  L      NK+R L         Y ++ +++SL  +  + CA     
Sbjct: 103 AIHNVEQFCRLLHLLANAKNYNKIRALLDSFAKNAHYSNSTIFHSLSVLGSWGCANSIIV 162

Query: 245 --VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
             + W   K   +  ++L  E  +  G+ G       LS   ++ SL K+  +   + ++
Sbjct: 163 DMLVWAYVK---NGEMDLALEGFDRAGDYGF--RLSALSCNPMLVSLVKEGRIGVVESVY 217

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
            +M  R I  +VV +  +I+G C +G+   A  +   +++ G  P   +YNT+I+ Y K 
Sbjct: 218 KEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKA 277

Query: 363 EKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRL 422
            K+ +A +L  EM++  + P+                         FN L+DG C+   +
Sbjct: 278 GKMFKADALLKEMVAKRIHPNE----------------------ITFNILIDGFCRDENV 315

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------- 469
            +A ++F+++ R G +PNVVTY  +I GLC  G +++A  L   M               
Sbjct: 316 TAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNAL 375

Query: 470 -----KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                K +   +A E+L  + KR + P+ IT + L
Sbjct: 376 INGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTL 410



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 119/266 (44%), Gaps = 17/266 (6%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L++AL   + M  M   P + ++N+L+     KK       + + +   GL P+ ++ N
Sbjct: 349 KLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFN 408

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ + K   + DAF+    +L     P+V T  CLI G C +G   EA  L  +    
Sbjct: 409 TLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGN 468

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             +     +++ Y  ++D LCK G   K   L  +M   G+ P    YN+LI  Y     
Sbjct: 469 GLK----ADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYF---- 520

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
               +GN++AAL +    +   G        ++++Y  +I   C    +++A  L  +M 
Sbjct: 521 ---REGNSTAALNVR-TLMEKKGR-----RANIVTYNVLIKGFCNKGKLEEANRLLNEML 571

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDD 332
            +G+IP+   Y  L D     G I D
Sbjct: 572 EKGLIPNRTTYDILRDEMMEKGFIPD 597



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 89/202 (44%), Gaps = 44/202 (21%)

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           +  II D++V++     Y   G +D A + F      G      S N ++ S  K  ++ 
Sbjct: 157 ANSIIVDMLVWA-----YVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIG 211

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
              S+Y EMI                        +  +++  F+ +++GLCK  + + A 
Sbjct: 212 VVESVYKEMIR----------------------RRIGVNVVTFDVVINGLCKVGKFQKAG 249

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAK 486
           ++ + +  +G  P+V+TY  +I G C  G + KA  LL +M                +AK
Sbjct: 250 DVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEM----------------VAK 293

Query: 487 RYVKPDEITVSILEELLNKDEN 508
           R + P+EIT +IL +   +DEN
Sbjct: 294 R-IHPNEITFNILIDGFCRDEN 314


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 185/414 (44%), Gaps = 60/414 (14%)

Query: 113 LNTIGLLPDFV--SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           +N   L P F     +  +   CK  GV  A   L  +  K   PDVVT   LI G+C +
Sbjct: 71  INQQTLFPCFSLSGFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKE 130

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G+  EA        ++ C+PNVI + I    I+  +C  G       L  DM  +G  P 
Sbjct: 131 GRLDEAIKFLNNMPSYGCQPNVITHNI----ILRSMCSTGRWMDAEKLLSDMLRKGCSPS 186

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF-VNGNGELGVICHPDVLSYCSIINSL 289
              +N LI   C        +G    A+++ E+  ++G       C P+ LSY  +++  
Sbjct: 187 VVTFNILINFLC-------RQGLLGRAIDILEKMPMHG-------CTPNSLSYNPLLHGF 232

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
           CK+  +D+A E    M SRG  PD+V Y++L+   C  G++D A ++   + S+GC P  
Sbjct: 233 CKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVL 292

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVF 409
            +YNT+I+  SK+ K E A+ L  EM   G++P                      D+  +
Sbjct: 293 ITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKP----------------------DIITY 330

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           + LV GL +  ++  A + F  L   G  PN +TY  ++ GLC                 
Sbjct: 331 SSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLC----------------- 373

Query: 470 KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
           K R+  +AI+ L  M  +  KP E T +IL E +  +    E ++LL    SR 
Sbjct: 374 KSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRG 427



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 158/354 (44%), Gaps = 30/354 (8%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  +  A+   + M +    P + ++N L+  +  +      I     + + G  P+ ++
Sbjct: 95  ESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVIT 154

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            NI++   C      DA   L  +LRK  SP VVT   LI  LC QG    A  +  K  
Sbjct: 155 HNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMP 214

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD-MKGRGIYPDAFVYNSLIRVYC- 242
              C     PN + Y  ++ G CK+  +++  + +LD M  RG YPD   YN+L+   C 
Sbjct: 215 MHGC----TPNSLSYNPLLHGFCKEKKMDRA-IEYLDIMVSRGCYPDIVTYNTLLTALCK 269

Query: 243 -----CAV---NWEDAKGNTSAALELHEEFVNGNGELGVI--------------CHPDVL 280
                 AV   N   +KG  S  L  +   ++G  ++G                  PD++
Sbjct: 270 DGKVDVAVEILNQLSSKG-CSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDII 328

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
           +Y S+++ L ++  VD+A + F D++  GI P+ + Y+S++ G C   + D A      +
Sbjct: 329 TYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYM 388

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
            S+ C P  ++Y  LI   +     +EAL L  E+ S G+   +S    AA + 
Sbjct: 389 ISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVKKSSAEQVAAPVL 442


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 124/496 (25%), Positives = 212/496 (42%), Gaps = 75/496 (15%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           + N ++ AL   + + N +     +   G+  D V+ N L+N +C+   V +AF  L   
Sbjct: 259 TLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSF 318

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN----------------- 191
             +   P ++T   ++ GLC  GK+  A  +  + +     PN                 
Sbjct: 319 SSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNI 378

Query: 192 --------------VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
                         V+P+++ ++S+I  L ++G + +  + F +M+  GI PD  +Y  L
Sbjct: 379 LEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTIL 438

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           I  +C         G  S AL++ +E       L   C  DV++Y + +N LCK  +   
Sbjct: 439 IDGFC-------RNGALSDALKMRDEM------LARGCFMDVVTYNTFLNGLCKKKMFAD 485

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A  LF +M  RG++PD   +++LI GYC  G +D A  LF ++      PD  +YNTLI+
Sbjct: 486 ADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLID 545

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFEL 404
            + K  ++  A  L+ +MI   + PD+               + EA  L   +       
Sbjct: 546 GFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRP 605

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           +L   N L+ G C+S  +  A+E   K+   G  P+  +Y  +I G   E  +EKA+ L+
Sbjct: 606 NLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILI 665

Query: 465 PDMEEKIRE------------------CLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
            +ME++  +                    +A ++L KM +  + PD  T S L       
Sbjct: 666 NEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQ 725

Query: 507 ENCHECMNLLPSFLSR 522
           +N  E        L R
Sbjct: 726 DNMKEAFRFHDEMLQR 741



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 111/401 (27%), Positives = 190/401 (47%), Gaps = 39/401 (9%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           +A   F+ M      P + SF+SL+G LA   +    +     +   G++PD V   IL+
Sbjct: 380 EAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILI 439

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           + FC+   +SDA      +L +    DVVT    + GLC +  F +A  LF + V     
Sbjct: 440 DGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMV----E 495

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
             ++P+   + ++I G CKDG ++K   LF  M    + PD   YN+LI  +C A     
Sbjct: 496 RGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKA----- 550

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
             G    A EL ++ +  +        PD +SY +++N  C   L+ +A  L   M  +G
Sbjct: 551 --GEMGRAKELWDDMIRKD------IIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKG 602

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
           I P++V  ++LI GYC  G +  A +    + S G IPD+ SYNTLI+ Y K   +E+A 
Sbjct: 603 IRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAF 662

Query: 370 SLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
            L  EM   G+                      + ++  +N +++G C   +++ A ++ 
Sbjct: 663 ILINEMEKRGL----------------------QFNIITYNLILNGFCAEGKMQEAEQVL 700

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           +K+   G  P+  TY+ +I G   +  +++A+    +M ++
Sbjct: 701 RKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQR 741



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 186/392 (47%), Gaps = 39/392 (9%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           M+ +  TP   ++N+LL  +  +   +    + + ++  G+LPD VS + L+    +   
Sbjct: 353 MLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGH 412

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           +  A +    + R    PD V    LI G C  G  ++A  +  + +A  C      +V+
Sbjct: 413 LYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGC----FMDVV 468

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            Y + ++GLCK        +LF +M  RG+ PD + + +LIR YC         GN   A
Sbjct: 469 TYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYC-------KDGNMDKA 521

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
           L L E  V  N        PD ++Y ++I+  CK   + +AKEL+ DM  + IIPD + Y
Sbjct: 522 LNLFEAMVRTN------LKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISY 575

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
            ++++G+C  G + +A  L   +  +G  P+  + NTLI  Y +   + +A     +MIS
Sbjct: 576 GTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMIS 635

Query: 378 MGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
            G+ PD+                        +N L+DG  K   L  A+ L  ++ + G 
Sbjct: 636 NGIIPDSFS----------------------YNTLIDGYLKEANLEKAFILINEMEKRGL 673

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           + N++TY +++ G C EG +++A  +L  M E
Sbjct: 674 QFNIITYNLILNGFCAEGKMQEAEQVLRKMIE 705



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 123/445 (27%), Positives = 206/445 (46%), Gaps = 48/445 (10%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+  +  +LNI++N  CK     +    L  +  K    D+VT   LI   C +G   EA
Sbjct: 252 GIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEA 311

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L   F +      + P ++ Y +I+ GLCK G  ++ + + ++M   G+ P+A  YN+
Sbjct: 312 FQLLNSFSS----RGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNT 367

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           L+   C        + N   A E+ +E        GV+  PD++S+ S+I  L ++  + 
Sbjct: 368 LLVEIC-------RRDNILEAQEIFDEM----SRRGVL--PDLVSFSSLIGVLARNGHLY 414

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A   F +M+  GI+PD V+Y+ LIDG+C  G + DA K+   + + GC  D  +YNT +
Sbjct: 415 QALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFL 474

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFE 403
           N   K +   +A  L+ EM+  G+ PD             +  + +A  LF  +  T  +
Sbjct: 475 NGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLK 534

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D   +N L+DG CK+  +  A EL+  + R    P+ ++Y  ++ G C  G + +A +L
Sbjct: 535 PDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNL 594

Query: 464 LPDMEEK-IRECL-----------------KAIELLHKMAKRYVKPDEITVSILEELLNK 505
              M EK IR  L                 KA E L KM    + PD  + + L +   K
Sbjct: 595 CDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLK 654

Query: 506 DENCHECMNLLPSFLSRNQEESKLT 530
           + N  +   L+     R  + + +T
Sbjct: 655 EANLEKAFILINEMEKRGLQFNIIT 679



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 159/317 (50%), Gaps = 17/317 (5%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+DAL   + M+       + ++N+ L  L  KK + +   L   +   G++PDF +   
Sbjct: 448 LSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTT 507

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+  +CK   +  A      ++R    PD VT   LI G C  G+   A  L+   +   
Sbjct: 508 LIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMI--- 564

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            R ++IP+ I Y ++++G C  G + +   L   M  +GI P+    N+LI+ YC     
Sbjct: 565 -RKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYC----- 618

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               G+   A E   + ++     G+I  PD  SY ++I+   K+  ++KA  L  +M+ 
Sbjct: 619 --RSGDMPKAYEYLSKMISN----GII--PDSFSYNTLIDGYLKEANLEKAFILINEMEK 670

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           RG+  +++ Y+ +++G+C  G++ +A ++   +   G  PD ++Y++LIN +   + ++E
Sbjct: 671 RGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKE 730

Query: 368 ALSLYGEMISMGVRPDN 384
           A   + EM+  G+ PD+
Sbjct: 731 AFRFHDEMLQRGLVPDD 747



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 90/381 (23%), Positives = 169/381 (44%), Gaps = 47/381 (12%)

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           L+R      K  E S  F        R  V  ++     ++ GL + G+V+    ++ ++
Sbjct: 193 LVRTYVQAKKLREGSEAFQILR----RKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEV 248

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
              GI  + +  N ++   C    +E+     S         + G G        D+++Y
Sbjct: 249 VRGGIELNVYTLNIMVNALCKDRKFENVMFFLSD--------MEGKG-----VFADIVTY 295

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
            ++IN+ C++ LV++A +L     SRG+ P ++ Y++++ G C +G+ D A+ + + +  
Sbjct: 296 NTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQ 355

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILE 389
            G  P+ ++YNTL+    + + + EA  ++ EM   GV PD             N  + +
Sbjct: 356 LGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQ 415

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
           A   FR +  +    D  ++  L+DG C++  L  A ++  ++   G   +VVTY   + 
Sbjct: 416 ALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLN 475

Query: 450 GLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENC 509
           GLC +     A     DM            L ++M +R + PD  T + L     KD N 
Sbjct: 476 GLCKKKMFADA-----DM------------LFNEMVERGMVPDFYTFTTLIRGYCKDGNM 518

Query: 510 HECMNLLPSFLSRNQEESKLT 530
            + +NL  + +  N +  K+T
Sbjct: 519 DKALNLFEAMVRTNLKPDKVT 539



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 83/200 (41%), Gaps = 11/200 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E+  A   ++ MI     P   S+ ++L            + L +++   G+ P+ V+ N
Sbjct: 552 EMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCN 611

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+  +C+   +  A+  L +++     PD  +   LI G   +    +A  L  +    
Sbjct: 612 TLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEME-- 669

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             +  +  N+I Y  I++G C +G + +   +   M   GI PD   Y+SLI       N
Sbjct: 670 --KRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLI-------N 720

Query: 247 WEDAKGNTSAALELHEEFVN 266
              ++ N   A   H+E + 
Sbjct: 721 GHVSQDNMKEAFRFHDEMLQ 740


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 130/480 (27%), Positives = 225/480 (46%), Gaps = 53/480 (11%)

Query: 70  DALCFFNYM---IHMQPTPFMPSFNSLLGALAGK---KYYVNFICLSERLNTIGLLPDFV 123
           +A+ FF+ M   +H + T  + SFNS+L  +  +    Y   F       N+ G  P+ +
Sbjct: 118 EAVNFFHRMANDLHCKQT--VKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLL 175

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           + N+++   CK+  +  A      +  K  +PDV T   L+ GLC + +  EA  L  + 
Sbjct: 176 TYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEM 235

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
            A  C    +PN + +  +ID L K+G +++   L  +M  +G  P+   YN+LI   C 
Sbjct: 236 QAEGC----LPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCL 291

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                  KG    AL L E+ V+        C P+ ++Y +IIN L K    +    + +
Sbjct: 292 -------KGKLDKALSLLEKMVSSK------CVPNQVTYGTIINGLVKQRRAEDGVHILM 338

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            M+ RG   +  +YSSLI G    G+ ++A +L+  +  +GC P+   Y   I+   + E
Sbjct: 339 SMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDE 398

Query: 364 KVEEALSLYGEMISMGVRPDN---SCIL----------EAAELFRTLHNTKFELDLTVFN 410
           K +EA  +  EM+S G  P+    S ++          +A  +++ + +     ++   +
Sbjct: 399 KPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCS 458

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            L++GLC+S RLR A  ++  +   G +P+VV Y+ MI GLC  G ++K   L  +M   
Sbjct: 459 VLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEM--- 515

Query: 471 IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
             +C +             +PD +T +IL   L + +N    ++LL S L    +   LT
Sbjct: 516 --QCQEPKS----------RPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLT 563



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 192/403 (47%), Gaps = 41/403 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +++ A+  F  M      P + ++++L+  L  ++     + L + +   G LP+ V+ N
Sbjct: 189 QIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFN 248

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +L++   K   +S A   +  +  K   P+ VT   LI GLC++GK  +A  L  K V+ 
Sbjct: 249 VLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSS 308

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C    +PN + Y +II+GL K         + + M+ RG   + ++Y+SLI        
Sbjct: 309 KC----VPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLF---- 360

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
               +G +  A+ L +E      E G  C P+V+ Y + I+ LC+D   D+A+++  +M 
Sbjct: 361 ---KEGKSENAVRLWKEM----AEKG--CKPNVVVYGAFIDGLCRDEKPDEAEDILQEML 411

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           S+G +P+   YSSL+ G+   G    A  ++  + S+    +    + L+N   +  ++ 
Sbjct: 412 SKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLR 471

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           EAL+++  M+  G++P                      D+  ++ ++ GLC    +    
Sbjct: 472 EALTVWTHMLGEGLKP----------------------DVVAYSSMIKGLCDVGSVDKGL 509

Query: 427 ELFKKLPRYGPE--PNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +LF ++    P+  P+VVTY ++   LC +  + +A DLL  M
Sbjct: 510 KLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSM 552



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 144/332 (43%), Gaps = 50/332 (15%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           SK+G+  L+ A    + M      P   ++N+L+  L  K      + L E++ +   +P
Sbjct: 255 SKNGD--LSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVP 312

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           + V+   ++N   K     D    L  +  +    +      LI GL  +GK   A  L+
Sbjct: 313 NQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLW 372

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            +     C+PNV+     Y + IDGLC+D   ++   +  +M  +G  P+AF Y+SL++ 
Sbjct: 373 KEMAEKGCKPNVV----VYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKG 428

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC------------------------- 275
           +         KG++  A+ + +E ++ +    V+C                         
Sbjct: 429 FF-------KKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHML 481

Query: 276 ----HPDVLSYCSIINSLCKDVLVDKAKELFLDM-----KSRGIIPDVVVYSSLIDGYCL 326
                PDV++Y S+I  LC    VDK  +LF +M     KSR   PDVV Y+ L +  C 
Sbjct: 482 GEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSR---PDVVTYNILFNALCR 538

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
              +  A  L  S+  EGC PD+ + N  + +
Sbjct: 539 QDNLTRAIDLLNSMLDEGCDPDSLTCNIFLET 570


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/418 (27%), Positives = 197/418 (47%), Gaps = 35/418 (8%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+ ++ +FN M+     P    FN+LL  + G   +  + C     + I ++ D  S  I
Sbjct: 110 LDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNE-SKIKVVLDVYSFGI 168

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++   C+   +  +F  L  +    FSP+VV    LI G C +G+  +A  LF +   F 
Sbjct: 169 VIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKF- 227

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               ++ N   Y  +I GL K+G   +   ++  M+  G++P+   YN       C +N 
Sbjct: 228 ---GLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYN-------CVMNQ 277

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               G T  A ++ +E      E GV C  ++++Y ++I  LC+++  ++A E+   MKS
Sbjct: 278 LCKDGRTKDAFKVFDEMR----ERGVSC--NIVTYNTLIGGLCREMKANEANEVMDQMKS 331

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            GI P+++ Y++LIDG+C + ++  A  L   ++S G  P   +YN L++ + K      
Sbjct: 332 DGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSG 391

Query: 368 ALSLYGEMISMGVRP---------------DNSCILEAAELFRTLHNTKFELDLTVFNCL 412
           A  +  EM   G++P               DN  + +A +L  ++       D+  ++ L
Sbjct: 392 AGKVVKEMEERGIKPSKVTYTILIDTFARSDN--MEKAIQLRSSMEELGLTPDVHTYSVL 449

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           + G C   R+  A  LFK +     EPN V Y  M+ G C EG   +A  L  +MEEK
Sbjct: 450 IHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFREMEEK 507



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 156/344 (45%), Gaps = 56/344 (16%)

Query: 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV 215
           DV + G +I+G C  G+  ++  L  +   F       PNV+ Y ++IDG CK G + K 
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELREF----GFSPNVVIYTTLIDGCCKKGEIEKA 217

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
           + LF +M   G+  + + Y  LI             G      E++E+      E GV  
Sbjct: 218 KDLFFEMGKFGLVANEWTYTVLIHGLF-------KNGIKKQGFEMYEKM----QEHGVF- 265

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
            P++ +Y  ++N LCKD     A ++F +M+ RG+  ++V Y++LI G C   + ++A +
Sbjct: 266 -PNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANE 324

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395
           +   ++S+G  P+  +YNTLI+ +  + K+ +ALS                      L R
Sbjct: 325 VMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALS----------------------LCR 362

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            L +      L  +N LV G CK      A ++ K++   G +P+ VTYT++I       
Sbjct: 363 DLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSD 422

Query: 456 GIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
            +EKA  L   MEE                   + PD  T S+L
Sbjct: 423 NMEKAIQLRSSMEE-----------------LGLTPDVHTYSVL 449



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 157/332 (47%), Gaps = 39/332 (11%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           + E++   G+ P+  + N +MN  CK     DAF     +  +  S ++VT   LI GLC
Sbjct: 255 MYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLC 314

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
            + K  EA+ +  +  +      + PN+I Y ++IDG C    + K   L  D+K RG+ 
Sbjct: 315 REMKANEANEVMDQMKS----DGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLS 370

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           P    YN L+  +C        KG+TS A ++ +E      E G+   P  ++Y  +I++
Sbjct: 371 PSLVTYNILVSGFC-------KKGDTSGAGKVVKEM----EERGI--KPSKVTYTILIDT 417

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
             +   ++KA +L   M+  G+ PDV  YS LI G+C+ GR+++A +LF S+  +   P+
Sbjct: 418 FARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPN 477

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTV 408
              YNT++  Y K      AL L+ EM    + P+                      +  
Sbjct: 478 EVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPN----------------------VAS 515

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
           +  +++ LCK  + + A  L +K+   G  P+
Sbjct: 516 YRYMIEVLCKERKSKEAEGLVEKMIDSGIGPS 547



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 132/306 (43%), Gaps = 21/306 (6%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DA   F+ M     +  + ++N+L+G L  +        + +++ + G+ P+ ++ N L+
Sbjct: 286 DAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLI 345

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           + FC +  +  A      +  +  SP +VT   L+ G C +G  T  +G   K +     
Sbjct: 346 DGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGD-TSGAGKVVKEME---E 401

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
             + P+ + Y  +ID   +   + K   L   M+  G+ PD   Y+ LI  +C       
Sbjct: 402 RGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCI------ 455

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
            KG  + A  L +  V    E      P+ + Y +++   CK+    +A  LF +M+ + 
Sbjct: 456 -KGRMNEASRLFKSMVEKKFE------PNEVIYNTMVLGYCKEGSSYRALRLFREMEEKE 508

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI----NSYSKIEKV 365
           + P+V  Y  +I+  C   +  +A  L   +   G  P  S  N +     +S+S+    
Sbjct: 509 LPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDSGIGPSDSILNLISRAKNDSHSRSMDE 568

Query: 366 EEALSL 371
           EE  S+
Sbjct: 569 EEPASM 574



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 22/173 (12%)

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F +     ++ DV  +  +I G C  G I+ +  L V +   G  P+   Y TLI+   K
Sbjct: 151 FFNESKIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCK 210

Query: 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
             ++E+A  L+ EM   G+  +                   E   TV   L+ GL K+  
Sbjct: 211 KGEIEKAKDLFFEMGKFGLVAN-------------------EWTYTV---LIHGLFKNGI 248

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC 474
            +  +E+++K+  +G  PN+ TY  ++  LC +G  + A+ +  +M E+   C
Sbjct: 249 KKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSC 301


>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
 gi|194700420|gb|ACF84294.1| unknown [Zea mays]
 gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
          Length = 598

 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/414 (28%), Positives = 190/414 (45%), Gaps = 63/414 (15%)

Query: 109 LSERLNTIGLLPDFVSL------NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGC 162
           L +    +G +P  V        N L++  C+   V+DA V L  +L +  +PDVVT   
Sbjct: 144 LEDARRVVGGMPAHVQASSAYAHNPLIHALCERGRVADALVVLDGMLCRGCAPDVVTYNI 203

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           L++  C    + +A  L     A  C PN +     Y  IID +C++G V++ R L   +
Sbjct: 204 LLQAACKGRGYRQALELIDFMRAEGCEPNNV----TYNVIIDAMCREGDVDQARELLNSL 259

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
             RG  P+   YN++++ +C    W DA        E+ +E V  N      C P+  + 
Sbjct: 260 PSRGCKPNTVNYNTVLKGFCSIERWVDAD-------EILDEMVREN------CPPNEATL 306

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
             IIN+LC+  L+ K       M   G   +VV Y+++I G C  G +D A +L  +++S
Sbjct: 307 NVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQS 366

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF 402
            GC PD  +YNT++      ++ E+A  L  +M      PDNS                 
Sbjct: 367 FGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNS----------------- 409

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
                 FN ++   C+   +  A+E+FK++P  G  PN  TY+ +I GL   G +E    
Sbjct: 410 -----TFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKME---- 460

Query: 463 LLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                        +A+ELL++MA +    D++   +L E LNK++   E + ++
Sbjct: 461 -------------QALELLNEMANKGFNTDKM-YRVLTESLNKEDKIEEVVQVV 500



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/407 (25%), Positives = 188/407 (46%), Gaps = 29/407 (7%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DAL   + M+     P + ++N LL A    + Y   + L + +   G  P+ V+ N+++
Sbjct: 181 DALVVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNVII 240

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           +  C+   V  A   L  +  +   P+ V    +++G C   ++ +A  +  + V    R
Sbjct: 241 DAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMV----R 296

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
            N  PN      II+ LC+ G + KV +    M   G   +   YN++I   C       
Sbjct: 297 ENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMC------- 349

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
            +GN  +ALEL     +        C PD+++Y +++  LC     + A+EL + M    
Sbjct: 350 EQGNVDSALELLSNMQSFG------CKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQND 403

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
            +PD   ++++I  +C  G I  A ++F  +  +GC P++++Y+T+I   +K  K+E+AL
Sbjct: 404 RLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQAL 463

Query: 370 SLYGEMISMGVRPDN------------SCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
            L  EM + G   D               I E  ++   L ++       ++N ++ GLC
Sbjct: 464 ELLNEMANKGFNTDKMYRVLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLGLC 523

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           ++ +   A ++   +   G  P+  TY ++I GL  EG  ++A +LL
Sbjct: 524 RNGKTDYAIDVLADMVSCGCMPDESTYIILIEGLFYEGYSKEARELL 570



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 107/428 (25%), Positives = 184/428 (42%), Gaps = 51/428 (11%)

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
           +I   D   AL  +      PDV     L+R LC +G+  +A+      V   C P    
Sbjct: 74  LIHRGDLDAALRLVGSSPRPPDVPLANRLVRDLCRRGRPADAA-----RVVEACGPEA-- 126

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
               Y +++DG C+ G +   R +   M        A+ +N LI   C        +G  
Sbjct: 127 TAATYGALVDGYCRAGLLEDARRVVGGMPAHVQASSAYAHNPLIHALC-------ERGRV 179

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
           + AL      V  +G L   C PDV++Y  ++ + CK     +A EL   M++ G  P+ 
Sbjct: 180 ADAL------VVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNN 233

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           V Y+ +ID  C  G +D AR+L  S+ S GC P+T +YNT++  +  IE+  +A  +  E
Sbjct: 234 VTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDE 293

Query: 375 MISMGVRPDNSC------------ILEAAELF-RTLHNTKFELDLTVFNCLVDGLCKSWR 421
           M+     P+ +             +L+   L+   +       ++  +N ++ G+C+   
Sbjct: 294 MVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGN 353

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIR--------- 472
           + SA EL   +  +G +P++VTY  ++ GLC     E A +L+  M +  R         
Sbjct: 354 VDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNT 413

Query: 473 ---------ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
                      L+A E+  +M ++   P+  T S +   L K     + + LL    ++ 
Sbjct: 414 IISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALELLNEMANKG 473

Query: 524 QEESKLTR 531
               K+ R
Sbjct: 474 FNTDKMYR 481


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 130/480 (27%), Positives = 225/480 (46%), Gaps = 53/480 (11%)

Query: 70  DALCFFNYM---IHMQPTPFMPSFNSLLGALAGK---KYYVNFICLSERLNTIGLLPDFV 123
           +A+ FF+ M   +H + T  + SFNS+L  +  +    Y   F       N+ G  P+ +
Sbjct: 142 EAVNFFHRMANDLHCKQT--VKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLL 199

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           + N+++   CK+  +  A      +  K  +PDV T   L+ GLC + +  EA  L  + 
Sbjct: 200 TYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEM 259

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
            A  C    +PN + +  +ID L K+G +++   L  +M  +G  P+   YN+LI   C 
Sbjct: 260 QAEGC----LPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCL 315

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                  KG    AL L E+ V+        C P+ ++Y +IIN L K    +    + +
Sbjct: 316 -------KGKLDKALSLLEKMVSSK------CVPNQVTYGTIINGLVKQRRAEDGVHILM 362

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            M+ RG   +  +YSSLI G    G+ ++A +L+  +  +GC P+   Y   I+   + E
Sbjct: 363 SMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDE 422

Query: 364 KVEEALSLYGEMISMGVRPDN---SCIL----------EAAELFRTLHNTKFELDLTVFN 410
           K +EA  +  EM+S G  P+    S ++          +A  +++ + +     ++   +
Sbjct: 423 KPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCS 482

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            L++GLC+S RLR A  ++  +   G +P+VV Y+ MI GLC  G ++K   L  +M   
Sbjct: 483 VLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEM--- 539

Query: 471 IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
             +C +             +PD +T +IL   L + +N    ++LL S L    +   LT
Sbjct: 540 --QCQEPKS----------RPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLT 587



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 192/403 (47%), Gaps = 41/403 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +++ A+  F  M      P + ++++L+  L  ++     + L + +   G LP+ V+ N
Sbjct: 213 QIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFN 272

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +L++   K   +S A   +  +  K   P+ VT   LI GLC++GK  +A  L  K V+ 
Sbjct: 273 VLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSS 332

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C    +PN + Y +II+GL K         + + M+ RG   + ++Y+SLI        
Sbjct: 333 KC----VPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLF---- 384

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
               +G +  A+ L +E      E G  C P+V+ Y + I+ LC+D   D+A+++  +M 
Sbjct: 385 ---KEGKSENAVRLWKEM----AEKG--CKPNVVVYGAFIDGLCRDEKPDEAEDILQEML 435

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           S+G +P+   YSSL+ G+   G    A  ++  + S+    +    + L+N   +  ++ 
Sbjct: 436 SKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLR 495

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           EAL+++  M+  G++P                      D+  ++ ++ GLC    +    
Sbjct: 496 EALTVWTHMLGEGLKP----------------------DVVAYSSMIKGLCDVGSVDKGL 533

Query: 427 ELFKKLPRYGPE--PNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +LF ++    P+  P+VVTY ++   LC +  + +A DLL  M
Sbjct: 534 KLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSM 576



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 133/304 (43%), Gaps = 48/304 (15%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N+L+  L  K      + L E++ +   +P+ V+   ++N   K     D    L  +
Sbjct: 305 TYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSM 364

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
             +    +      LI GL  +GK   A  L+ +     C+PNV+     Y + IDGLC+
Sbjct: 365 EERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVV----VYGAFIDGLCR 420

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           D   ++   +  +M  +G  P+AF Y+SL++ +         KG++  A+ + +E ++ +
Sbjct: 421 DEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFF-------KKGDSQKAILVWKEMMSQD 473

Query: 269 GELGVIC-----------------------------HPDVLSYCSIINSLCKDVLVDKAK 299
               V+C                              PDV++Y S+I  LC    VDK  
Sbjct: 474 MRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGL 533

Query: 300 ELFLDM-----KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           +LF +M     KSR   PDVV Y+ L +  C    +  A  L  S+  EGC PD+ + N 
Sbjct: 534 KLFYEMQCQEPKSR---PDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNI 590

Query: 355 LINS 358
            + +
Sbjct: 591 FLET 594


>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
 gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
          Length = 796

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 130/536 (24%), Positives = 231/536 (43%), Gaps = 97/536 (18%)

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           F  MI     P + ++  L+        +   + + + ++  GL PD  +  +L++  CK
Sbjct: 262 FQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCK 321

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN--- 191
               ++A      ++RK   PDV   G ++ G   +G  +E        V     PN   
Sbjct: 322 KGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYI 381

Query: 192 ----------------------------VIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
                                       + PNV+ YA++ID LCK G V+   + F  M 
Sbjct: 382 FNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMI 441

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
             G+ P+  V+ SL+   C    WE A        EL  E VN         HP+V+ + 
Sbjct: 442 NEGVAPNIVVFTSLVYGLCTIDKWEKAG-------ELFFEMVNQG------IHPNVVFFN 488

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
           +I+ +LC +  V KA+ L   M+  G  PD++ Y++LI G+CL+G+ D+A KL   + S 
Sbjct: 489 TIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSV 548

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP--------------------- 382
           G  P+  +YNTL++ Y +  ++++A S++ EM+S G+ P                     
Sbjct: 549 GLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEA 608

Query: 383 ---------------------------DNSCILEAAELFRTLHNTKFELDLTVFNCLVDG 415
                                       N+C+ EA ++F++L +   ++D+  FN ++  
Sbjct: 609 KELYLNMITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGA 668

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL 475
           L K  R   A  LF  +   G  P+V TY ++   L  EG +E+   +  +ME+    C 
Sbjct: 669 LLKDGRKEDAMNLFATISANGLVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKS--GCA 726

Query: 476 KAIELLHKMAKRYVKPDEITV--SILEELLNKDENCH-ECMNLLPSFLSRNQEESK 528
               +L+ + +R +   +I+   + L ++  K+ +      ++L S  SR + ++K
Sbjct: 727 PNSLMLNFLVRRLLLRGDISRAGAYLSKIDEKNFSLEASTTSMLISLFSREEHQAK 782



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 122/449 (27%), Positives = 198/449 (44%), Gaps = 55/449 (12%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF-----VALGRILRKVFSPDVVTLGCL 163
           L  R++ +G  P+ VS N L+  FC      +A      +A G++  +   P++V+   +
Sbjct: 153 LLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQV--RSCPPNLVSYNTV 210

Query: 164 IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
           I G   +G+  +A  LF           + PNV+ Y  +IDGLCK   V++   +F  M 
Sbjct: 211 INGFFTEGQVDKAYNLFLDMT----DQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMI 266

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
            +G+ P+   Y  LI  Y     W++          L E   +G         PD  +Y 
Sbjct: 267 DKGVRPNIVTYTCLIHGYLSIGQWKEV------VRMLKEMSAHG-------LEPDCFTYG 313

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
            +++ LCK     +A++LF  M  +GI PDV +Y  ++ GY   G + +       +   
Sbjct: 314 LLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGN 373

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSCIL---EAA 391
           G  P+   +N +  +++K   + EA+ ++ +M   G+ P         D  C L   + A
Sbjct: 374 GISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDA 433

Query: 392 EL-FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
           EL F  + N     ++ VF  LV GLC   +   A ELF ++   G  PNVV +  ++C 
Sbjct: 434 ELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCN 493

Query: 451 LCIEGGIEKAYDLLPDMEEK------------IR-ECL-----KAIELLHKMAKRYVKPD 492
           LC EG + KA  L+  ME              IR  CL     +A +LL  M    +KP+
Sbjct: 494 LCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPN 553

Query: 493 EITVSILEELLNKDENCHECMNLLPSFLS 521
           E T + L     +D    +  ++    LS
Sbjct: 554 ECTYNTLLHGYCRDGRIDDAYSVFQEMLS 582



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 108/426 (25%), Positives = 183/426 (42%), Gaps = 80/426 (18%)

Query: 52  KLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFI---- 107
           +L + +   +++G + ++DAL  F+  +H      + +FN LL A++      +      
Sbjct: 15  ELERIIGARARAGSLSVDDALKLFDEFLHHARPASIIAFNQLLAAVSSASRRGSSSTSEL 74

Query: 108 ---CLSERLNTI--GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGC 162
              C +  +      + PD  + +IL+ CFC+M  +   F A G IL+  +  + V +  
Sbjct: 75  VVSCFNRMIRDCCSKVAPDVFTYSILVGCFCRMGRLEHGFAAFGLILKTGWRVNDVVVVN 134

Query: 163 -LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD 221
            L++GLC   +  EA G                                      VL   
Sbjct: 135 RLLKGLCDAKRVGEAMG--------------------------------------VLLRR 156

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
           M   G  P+   YN+L++ +C     E+A       LEL     +G       C P+++S
Sbjct: 157 MSELGCTPNVVSYNTLLKGFCDENRAEEA-------LELLHMMADGQVR---SCPPNLVS 206

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y ++IN    +  VDKA  LFLDM  +GI P+VV Y+ +IDG C    +D A  +F  + 
Sbjct: 207 YNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMI 266

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK 401
            +G  P+  +Y  LI+ Y  I + +E + +  EM + G+ PD  C               
Sbjct: 267 DKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPD--CF-------------- 310

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
                  +  L+D LCK  +   A +LF  + R G +P+V  Y +++ G   +G + + +
Sbjct: 311 ------TYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMH 364

Query: 462 DLLPDM 467
             L  M
Sbjct: 365 SFLDLM 370



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 150/326 (46%), Gaps = 33/326 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGAL--------AGKKYYVNFICLSERLNTIGL 118
            ++DA   FN MI+    P +  F SL+  L        AG+ ++       E +N  G+
Sbjct: 429 RVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFF-------EMVNQ-GI 480

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
            P+ V  N +M   C    V  A   +  + R    PD+++   LIRG C+ GK  EAS 
Sbjct: 481 HPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASK 540

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           L    ++   +PN       Y +++ G C+DG ++    +F +M   GI P    YN+++
Sbjct: 541 LLDIMLSVGLKPNECT----YNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTIL 596

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
                   + +AK       EL+   +    +        + +Y  I+N L K+  VD+A
Sbjct: 597 HGLFKTRRFSEAK-------ELYLNMITSGKQW------SIYTYNIILNGLSKNNCVDEA 643

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
            ++F  + S+ +  D++ ++ +I      GR +DA  LF +I + G +PD ++Y  +  +
Sbjct: 644 LKMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAMNLFATISANGLVPDVTTYRLIAEN 703

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDN 384
             +   +EE   ++ EM   G  P++
Sbjct: 704 LIEEGSLEEFDGMFSEMEKSGCAPNS 729



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 111/242 (45%), Gaps = 43/242 (17%)

Query: 285 IINSLCKDVLVDKAKELFLD-MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI--- 340
           ++  LC    V +A  + L  M   G  P+VV Y++L+ G+C   R ++A +L   +   
Sbjct: 136 LLKGLCDAKRVGEAMGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADG 195

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNT 400
           +   C P+  SYNT+IN +    +V++A +L+ +M   G+ P+                 
Sbjct: 196 QVRSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPN----------------- 238

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
                +  +  ++DGLCK+  +  A  +F+++   G  PN+VTYT +I G          
Sbjct: 239 -----VVTYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHG---------- 283

Query: 461 YDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
           Y  +   +E +R       +L +M+   ++PD  T  +L + L K   C E   L  S +
Sbjct: 284 YLSIGQWKEVVR-------MLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMI 336

Query: 521 SR 522
            +
Sbjct: 337 RK 338


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 190/396 (47%), Gaps = 29/396 (7%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + +FN L+ AL         I + E + + GL+PD  +   +M  + +   +  A   
Sbjct: 187 PDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRI 246

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
             +++    S   V++  ++ G C +G+  +A     +    D      P+   + ++++
Sbjct: 247 REQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQD---GFFPDQYTFNTLVN 303

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           GLCK G V     +   M   G  PD + YNS+I   C         G    A+E  ++ 
Sbjct: 304 GLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLC-------KLGEVKEAVEFLDQM 356

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           +  +      C P+ ++Y ++I++LCK+  V++A EL   + S+GI+PDV  ++SLI G 
Sbjct: 357 ITRD------CSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 410

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM--------- 375
           CL      A +LF  + S+GC PD  +YN LI+S     K++EAL++  +M         
Sbjct: 411 CLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSV 470

Query: 376 ISMGVRPDNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
           I+     D  C    I EA E+F  +       +   +N L+DGLCKS R+  A +L  +
Sbjct: 471 ITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQ 530

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +   G +P+  TY  ++   C  G I+KA D++  M
Sbjct: 531 MIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAM 566



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 115/414 (27%), Positives = 189/414 (45%), Gaps = 63/414 (15%)

Query: 104 VNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCL 163
           +NFI   E  N  G  PD  + N L+N  CK   V  A   +  +L++ + PDV T   +
Sbjct: 279 LNFI--QEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSV 336

Query: 164 IRGLCMQGKFTEASGLFTKFVAFDCRPN-------------------------------V 192
           I GLC  G+  EA     + +  DC PN                               +
Sbjct: 337 ISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGI 396

Query: 193 IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252
           +P+V  + S+I GLC          LF +M+ +G  PD F YN LI   C       +KG
Sbjct: 397 LPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLC-------SKG 449

Query: 253 NTSAALELHEEF-VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
               AL + ++  ++G       C   V++Y ++I+  CK   + +A+E+F +M+  G+ 
Sbjct: 450 KLDEALNMLKQMELSG-------CARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVS 502

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
            + V Y++LIDG C   R++DA +L   +  EG  PD  +YN+L+  + +   +++A  +
Sbjct: 503 RNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADI 562

Query: 372 YGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
              M S G  PD                +  A++L R++      L    +N ++ GL +
Sbjct: 563 VQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQGLFR 622

Query: 419 SWRLRSAWELFKK-LPRYGPEPNVVTYTVMICGLCIEGG-IEKAYDLLPDMEEK 470
             +   A  LF++ L +    P+ V+Y ++  GLC  GG I +A D L ++ EK
Sbjct: 623 KRKTTEAINLFREMLEQNEAAPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEK 676



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 166/383 (43%), Gaps = 55/383 (14%)

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC------ 242
           +PN  P    Y  I+  L + G  + +R +  DMK  G       +  LI  Y       
Sbjct: 76  KPNFSPEPALYEEILLRLGRSGSFDDMRKILEDMKNSGCEMGTSPFLILIESYAQFELQD 135

Query: 243 ---CAVNW--ED--AKGNTSAALELHEEFVNGNG-ELGVICH---------PDVLSYCSI 285
                V+W  +D   K +T     +    V+GN  +L  I H         PDV ++  +
Sbjct: 136 EILGVVHWMIDDFGLKPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNVL 195

Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
           I +LC+   +  A  +  DM S G++PD   +++++ GY   G +D A ++   +   GC
Sbjct: 196 IKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGC 255

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISM-GVRPDN-------------SCILEAA 391
                S N +++ + K  +VE+AL+   EM +  G  PD                +  A 
Sbjct: 256 SWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAI 315

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
           E+   +    ++ D+  +N ++ GLCK   ++ A E   ++      PN VTY  +I  L
Sbjct: 316 EIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTL 375

Query: 452 CIEGGIEKAYDL---------LPDM---EEKIRE-CLK-----AIELLHKMAKRYVKPDE 493
           C E  +E+A +L         LPD+      I+  CL      A+EL  +M  +  +PDE
Sbjct: 376 CKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDE 435

Query: 494 ITVSILEELLNKDENCHECMNLL 516
            T ++L + L       E +N+L
Sbjct: 436 FTYNMLIDSLCSKGKLDEALNML 458



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 15/204 (7%)

Query: 281 SYCSIINSLCKDVLVDKAKELF-LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           S   +++SL        A  LF L  K     P+  +Y  ++      G  DD RK+   
Sbjct: 49  SDVKLLDSLRSQADDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMRKILED 108

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS-MGVRPDNSCILEAAELFRTLH 398
           +++ GC   TS +  LI SY++ E  +E L +   MI   G++PD         L    +
Sbjct: 109 MKNSGCEMGTSPFLILIESYAQFELQDEILGVVHWMIDDFGLKPDTHFYNRMLNLLVDGN 168

Query: 399 NTKF-------------ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
           N K              + D++ FN L+  LC++ +LR A  + + +P YG  P+  T+T
Sbjct: 169 NLKLVEIAHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFT 228

Query: 446 VMICGLCIEGGIEKAYDLLPDMEE 469
            ++ G   EG ++ A  +   M E
Sbjct: 229 TIMQGYIEEGDLDGALRIREQMVE 252


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 136/538 (25%), Positives = 220/538 (40%), Gaps = 96/538 (17%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            + DAL   + M      P  P ++  L A      +   + +   L+  G   D  + N
Sbjct: 126 RIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAVGVLRDLHGRGCALDVGNCN 185

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFS--PDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
           +++   C   G  D  V L R L   F   PDVV+   ++RGLCM  ++     L  + V
Sbjct: 186 LVLQAVCDQ-GPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMV 244

Query: 185 AFDCRPNVI-------------------------------PNVICYASIIDGLCKDGFVN 213
           A  C PN++                               P+V  YA+IIDG+CK+  + 
Sbjct: 245 AAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLE 304

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE-----------LHE 262
             R +   M   G+ P+   YN+L++  C A  WE+A+G  +   +           +  
Sbjct: 305 VARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILV 364

Query: 263 EFVNGNGELGVI-----------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
           +F+  NG +  +           C PDV++Y ++IN  CK+ L+D+A  L   M + G  
Sbjct: 365 DFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCR 424

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           P+ V Y+ ++ G C   R  DA +L   +  +GC P+  ++NTLIN   K   VE+A+ L
Sbjct: 425 PNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIEL 484

Query: 372 YGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
             +M+  G  P                      DL  ++ ++DGL K+     A EL   
Sbjct: 485 LKQMLVNGCSP----------------------DLISYSTVIDGLGKAGNTDEALELLNV 522

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRE 473
           + + G  PN + Y+ +   L  EG I K   +  ++++                  K  E
Sbjct: 523 MVKKGMSPNTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGE 582

Query: 474 CLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLTR 531
             +AIE L  M      P+E T +IL   L  +    E   +L    S+      L +
Sbjct: 583 TDRAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEILTELCSKGALRKHLMK 640



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/417 (25%), Positives = 173/417 (41%), Gaps = 85/417 (20%)

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP-----NVIPNVICYAS------- 201
           +P+  T   L+R LC +G+  +A  +        C P     +V     C AS       
Sbjct: 108 APNAYTYFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAVG 167

Query: 202 -------------------IIDGLCKDGFVNK-VRVLFLDMKGRGIYPDAFVYNSLIRVY 241
                              ++  +C  G V++ VR+L   +   G  PD   YN+++R  
Sbjct: 168 VLRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGL 227

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C A  W   +       +L EE V         C P+++++ ++I  LC++ L ++  E+
Sbjct: 228 CMARRWGHVQ-------DLMEEMVAAG------CPPNIVTFSTLIGHLCRNGLFERVHEV 274

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
              M   G  PDV +Y+++IDG C   R++ AR +   + S G  P+   YNTL+     
Sbjct: 275 HAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCS 334

Query: 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
            ++ EEA  L  EM       D  C                 LD   FN LVD LC++  
Sbjct: 335 ADRWEEAEGLLAEMF------DKDC----------------PLDDVTFNILVDFLCQNGL 372

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------ 469
           +    E+ +++  +G  P+V+TYT +I G C EG I++A  LL  M              
Sbjct: 373 VDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTI 432

Query: 470 ------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
                      + A EL+ +M ++   P+ +T + L   L K     + + LL   L
Sbjct: 433 VLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQML 489



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 124/314 (39%), Gaps = 71/314 (22%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC----------- 325
           P+  +Y  ++ +LC    +  A  +  DM  RG  P   +Y   ++  C           
Sbjct: 109 PNAYTYFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAVGV 168

Query: 326 ---LMGR---------------------IDDARKLFVS-IESEGCIPDTSSYNTLINSYS 360
              L GR                     +D+A +L    + S GC PD  SYN ++    
Sbjct: 169 LRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLC 228

Query: 361 KIEKVEEALSLYGEMISMGVRPD----NSCI--LEAAELFRTLHNTKFEL-------DLT 407
              +      L  EM++ G  P+    ++ I  L    LF  +H    ++       D+ 
Sbjct: 229 MARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVR 288

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           ++  ++DG+CK  RL  A  +  ++P YG  PNVV Y  ++ GLC     E+A  LL +M
Sbjct: 289 MYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEM 348

Query: 468 EEKIRECL--------------------KAIELLHKMAKRYVKPDEITVSILEELLNKDE 507
            +K  +C                     + IE+L +M +    PD IT + +     K+ 
Sbjct: 349 FDK--DCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEG 406

Query: 508 NCHECMNLLPSFLS 521
              E + LL S  +
Sbjct: 407 LIDEAVMLLRSMAA 420


>gi|297837133|ref|XP_002886448.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332289|gb|EFH62707.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 332

 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 162/316 (51%), Gaps = 39/316 (12%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G   D V+ N LMN  C+   V +A   + R++     P+ VT G ++ G+C  G    A
Sbjct: 5   GCQHDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGDTDSA 64

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L  K        ++  +V+ Y +IID LCKDG  +K + LF +M  +GI+P+   YN 
Sbjct: 65  LNLLRKMD----ESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNC 120

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           +I   C    W DA+       +L  + +  N +      PDV+++ ++IN+  K+  + 
Sbjct: 121 MIDGCCSYGKWTDAE-------QLLRDMIESNVD------PDVVTFNALINAFVKEGKIS 167

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A+EL+ +M  R I PD + Y+SLIDG+C   R+DDA+ +F  + S+G  P+  + NTLI
Sbjct: 168 EAEELYREMLGRNIFPDTITYNSLIDGFCKHSRLDDAKHIFDLMVSKGGSPNVITINTLI 227

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
               + ++V++ + L  EM+  G+ PD+                        +N L+ G 
Sbjct: 228 GGCCRAKRVDDGIKLLHEMLRRGLVPDS----------------------VSYNTLIHGF 265

Query: 417 CKSWRLRSAWELFKKL 432
           C++  L +A +LF+++
Sbjct: 266 CQAGDLNAAQDLFQEM 281



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 144/294 (48%), Gaps = 26/294 (8%)

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           +V+ + ++++GLC++G V +   L   M   G  P+   Y +++   C         G+T
Sbjct: 9   DVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMC-------KMGDT 61

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
            +AL L  +    +         DV+ Y +II+ LCKD    KA+ LF +M  +GI P+V
Sbjct: 62  DSALNLLRKMDESH------IKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNV 115

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           + Y+ +IDG C  G+  DA +L   +      PD  ++N LIN++ K  K+ EA  LY E
Sbjct: 116 LTYNCMIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYRE 175

Query: 375 MISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
           M+   + PD             +S + +A  +F  + +     ++   N L+ G C++ R
Sbjct: 176 MLGRNIFPDTITYNSLIDGFCKHSRLDDAKHIFDLMVSKGGSPNVITINTLIGGCCRAKR 235

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL 475
           +    +L  ++ R G  P+ V+Y  +I G C  G +  A DL  +M  ++R  L
Sbjct: 236 VDDGIKLLHEMLRRGLVPDSVSYNTLIHGFCQAGDLNAAQDLFQEMISQVRWIL 289



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 90/216 (41%), Gaps = 46/216 (21%)

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M  +G   DVV +++L++G C  GR+ +A  L   +   G  P+  +Y T++N   K+  
Sbjct: 1   MVEKGCQHDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGD 60

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
            + AL+                      L R +  +  + D+ ++  ++D LCK      
Sbjct: 61  TDSALN----------------------LLRKMDESHIKADVVIYTAIIDRLCKDGHHSK 98

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM----------------- 467
           A  LF ++   G  PNV+TY  MI G C  G    A  LL DM                 
Sbjct: 99  AQNLFTEMHDKGIFPNVLTYNCMIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALIN 158

Query: 468 ----EEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
               E KI E   A EL  +M  R + PD IT + L
Sbjct: 159 AFVKEGKISE---AEELYREMLGRNIFPDTITYNSL 191


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/396 (27%), Positives = 184/396 (46%), Gaps = 47/396 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G++P   + N +++ F K      A+V    + R      VVT   +I  LC +GK  +A
Sbjct: 151 GVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKA 210

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
                +F+       + PNV+ Y +II G C  G V   R++F  MK RG+ PD++ Y S
Sbjct: 211 K----EFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGS 266

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
            I   C     E+A G            +    E+G+   P  ++Y ++I+  C    ++
Sbjct: 267 FISGMCKEGKLEEASG-----------MLEKMKEIGL--RPTAVTYNTLIDGYCNKGNLE 313

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A +    M   G++P V  Y+ LI    L  ++D+A  +   +  +G +PD+ +YN LI
Sbjct: 314 MAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILI 373

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFE 403
           N Y +   V++A +L+ EMIS G++P                 + +A +LF  +      
Sbjct: 374 NGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIF 433

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            DL +FN L+DG C +  +  A+ + K++ +    P+ VT+  ++ G C EG +E A   
Sbjct: 434 PDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAAR-- 491

Query: 464 LPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                          EL+ +M  R +KPD I+ + L
Sbjct: 492 ---------------ELIEEMKSRGIKPDHISYNTL 512



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 123/432 (28%), Positives = 193/432 (44%), Gaps = 71/432 (16%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGAL--AGK-KYYVNFICLSERLNTIGLLPDFVSLNI 127
           A   +  M  M+    + +FN ++  L   GK K    FI L E L   G+ P+ V+ N 
Sbjct: 175 AWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEAL---GIKPNVVTYNT 231

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           +++ +C    V  A +    +  +   PD  T G  I G+C +GK  EASG+  K     
Sbjct: 232 IIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIG 291

Query: 188 CRPNVIPNVICYASIIDGLCKDG-------FVNK----------------VRVLFLD--- 221
            R    P  + Y ++IDG C  G       + +K                +  LFLD   
Sbjct: 292 LR----PTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKM 347

Query: 222 ---------MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
                    M  +G+ PD+  YN LI  YC         GN   A  LH+E ++      
Sbjct: 348 DEADGIIKEMSEKGLVPDSVTYNILINGYCRC-------GNVKKAFTLHDEMISKG---- 396

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
               P  ++Y S+I  L K   + +A +LF  +  +GI PD++++++LIDG+C  G +D 
Sbjct: 397 --IQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDR 454

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCIL 388
           A  +   ++    +PD  ++NTL+    +  KVE A  L  EM S G++PD    N+ I 
Sbjct: 455 AFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLIS 514

Query: 389 ------EAAELFRT---LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
                 +  + FR    + +  F   L  +N L+ GLCK+     A +L K++   G  P
Sbjct: 515 GYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITP 574

Query: 440 NVVTYTVMICGL 451
           N  TY  +I G+
Sbjct: 575 NDNTYLSLIEGI 586



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 143/300 (47%), Gaps = 19/300 (6%)

Query: 64  GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV 123
           G +E+  A  + + M+     P + ++N L+ AL           + + ++  GL+PD V
Sbjct: 310 GNLEM--AFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSV 367

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           + NIL+N +C+   V  AF     ++ K   P  VT   LI  L  +G+  +A  LF K 
Sbjct: 368 TYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKI 427

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
           V    R  + P++I + ++IDG C +G +++   +  +M    + PD   +N+L++  C 
Sbjct: 428 V----RKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRC- 482

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                  +G   AA EL EE  +          PD +SY ++I+   K   +  A  +  
Sbjct: 483 ------REGKVEAARELIEEMKSRG------IKPDHISYNTLISGYSKRGDMKDAFRVRD 530

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
           +M S G  P ++ Y++LI G C     D A +L   + S+G  P+ ++Y +LI     +E
Sbjct: 531 EMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSLIEGIGNVE 590



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 119/249 (47%), Gaps = 35/249 (14%)

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
           MKG+G+ P     N ++ ++            T  A  L+ E         +     V++
Sbjct: 147 MKGKGVIPHVHACNDMLSLFL-------KSNRTEKAWVLYAEMFR------MRIKSSVVT 193

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           +  +IN LCK+  + KAKE    M++ GI P+VV Y+++I GYC  GR++ AR +F  ++
Sbjct: 194 FNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMK 253

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK 401
             G  PD+ +Y + I+   K  K+EEA  +  +M  +G+RP                   
Sbjct: 254 CRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRP------------------- 294

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
                  +N L+DG C    L  A++   K+ R G  P V TY ++I  L ++  +++A 
Sbjct: 295 ---TAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEAD 351

Query: 462 DLLPDMEEK 470
            ++ +M EK
Sbjct: 352 GIIKEMSEK 360



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 79/361 (21%), Positives = 142/361 (39%), Gaps = 93/361 (25%)

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGN--------GELGV----ICHPDVLSYCSI 285
           I+  C A+       N+  +L+L +E +N           ELGV    +     + Y  +
Sbjct: 68  IKSKCLAMAVISHAPNSKPSLQLLKETINSGVYSIREVFNELGVARGVLGIKTYVLYDLL 127

Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIP--------------------------------- 312
           I + C+    D A E F  MK +G+IP                                 
Sbjct: 128 IRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMFRMRI 187

Query: 313 --DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
              VV ++ +I+  C  G++  A++    +E+ G  P+  +YNT+I+ Y    +VE A  
Sbjct: 188 KSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARM 247

Query: 371 LYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
           ++  M   GV+PD+                        +   + G+CK  +L  A  + +
Sbjct: 248 IFDLMKCRGVKPDS----------------------YTYGSFISGMCKEGKLEEASGMLE 285

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL--------------- 475
           K+   G  P  VTY  +I G C +G +E A+D    M   +RE L               
Sbjct: 286 KMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKM---VREGLMPTVSTYNMLIHALF 342

Query: 476 ------KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKL 529
                 +A  ++ +M+++ + PD +T +IL     +  N  +   L    +S+  + +++
Sbjct: 343 LDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRV 402

Query: 530 T 530
           T
Sbjct: 403 T 403


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 127/443 (28%), Positives = 204/443 (46%), Gaps = 58/443 (13%)

Query: 67   ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNF-ICLSERLNTIGLLPDFVSL 125
            +++ AL  F  M      P + ++ +LL +L  K   ++F + +   L    L+PD    
Sbjct: 648  DVDQALDVFGRMKEEGMEPLLGNYKTLLSSLV-KDEKIDFALQIFNELQESSLVPDTFVY 706

Query: 126  NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
            NI++N   K   V +A   +  +  +   PD+ T   L+ GL   G+  EA  +FTK   
Sbjct: 707  NIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMT- 765

Query: 186  FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
                    P+V+ Y S++D L K G ++   ++F  M  +   PD   Y+SLI       
Sbjct: 766  ---EEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLI------- 815

Query: 246  NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
               D+ G      E +  F N    +   C P+V  Y S+I+S  K  +VD+A ELF +M
Sbjct: 816  ---DSLGKEGRVEEAYYFFEN---SISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEM 869

Query: 306  KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
            + R   P++V Y++L+ G    GR++ A KL   +E  GC+PD  +YN LI+   K+  V
Sbjct: 870  QRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMV 929

Query: 366  EEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
            +EA S +  M   G+ PD                      +  F  L++ L K  +L  A
Sbjct: 930  DEAESYFKRMKEKGIVPD----------------------VITFTSLIESLGKVDKLLEA 967

Query: 426  WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMA 485
             ELF  +   G  P+VVTY V+I  L   G + +A  +  +M  K++ C+          
Sbjct: 968  CELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEM--KVKGCM---------- 1015

Query: 486  KRYVKPDEITVSILEELLNKDEN 508
                 PD IT+ I++ +L+  E 
Sbjct: 1016 -----PDGITIGIMKRILSVREQ 1033



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 117/464 (25%), Positives = 205/464 (44%), Gaps = 59/464 (12%)

Query: 68   LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
            L++A+     M      P + +++SL+ +   +      + L + +   G + D  + ++
Sbjct: 579  LDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSL 638

Query: 128  LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
            ++NC CK   V  A    GR+  +   P +     L+  L    K   A  +F +     
Sbjct: 639  VINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQ--- 695

Query: 188  CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               +++P+   Y  +++GL K   V++   L   MK + I PD F Y SL+     +   
Sbjct: 696  -ESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRL 754

Query: 248  EDAKGN-TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            E+A    T    E HE              PDV++Y S+++ L K   +  A  +F  M 
Sbjct: 755  EEAFNMFTKMTEEGHE--------------PDVVAYTSLMDVLGKGGKLSHALIIFRAMA 800

Query: 307  SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
             +  +PDVV YSSLID     GR+++A   F +  S+GC P+   Y++LI+S+ K   V+
Sbjct: 801  KKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVD 860

Query: 367  EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
             AL L+ EM      P+                      +  +N L+ GL K+ RL  A 
Sbjct: 861  RALELFEEMQRRQCPPN----------------------IVTYNNLLSGLAKAGRLNVAE 898

Query: 427  ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE----------------- 469
            +L +++ + G  P++VTY ++I G+   G +++A      M+E                 
Sbjct: 899  KLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESL 958

Query: 470  -KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHEC 512
             K+ + L+A EL   M +    P  +T ++L ++L +    HE 
Sbjct: 959  GKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEA 1002



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 145/624 (23%), Positives = 236/624 (37%), Gaps = 157/624 (25%)

Query: 51  TKLLK-YLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICL 109
           T LL+ + S N+ SG +E+      FN M      P    +N +L  L    +Y + + +
Sbjct: 221 TSLLRTFGSTNNVSGALEI------FNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIV 274

Query: 110 SERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCM 169
             +L    + PD  +  I ++ F +   +  A   +  +++    P V T   LI  L  
Sbjct: 275 FGKLGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVK 334

Query: 170 QGKFTEASGLFTKFVAFDCRPNVI-------------------------------PNVIC 198
            G   EA   F       C PNV+                               P+ I 
Sbjct: 335 SGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIA 394

Query: 199 YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA-------- 250
           Y ++IDGL K G  +    LF +MK RG+ P+   YN +I V   A    +A        
Sbjct: 395 YNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLK 454

Query: 251 --------------------KGNTSAALELHEEFVNGNGEL-----------GVICHPDV 279
                                G     L + +E V   GE            G I   D 
Sbjct: 455 EQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADR 514

Query: 280 --------------LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
                         ++Y +++++   +  VD+A +L   MK    IP VV Y++L+DG  
Sbjct: 515 TVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLG 574

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
             GR+D+A  L   +E +GC P   +Y++L+ S+ K ++ EE+LSL+ EM+  G   D S
Sbjct: 575 KAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVS 634

Query: 386 -------CILE-----------------------------------------AAELFRTL 397
                  C+ +                                         A ++F  L
Sbjct: 635 TYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNEL 694

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
             +    D  V+N +V+GL KS R+  A +L   +      P++ TYT ++ GL   G +
Sbjct: 695 QESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRL 754

Query: 458 EKAYDLLPDMEEKIRE------------------CLKAIELLHKMAKRYVKPDEITVSIL 499
           E+A+++   M E+  E                     A+ +   MAK+   PD +T S L
Sbjct: 755 EEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSL 814

Query: 500 EELLNKDENCHECMNLLPSFLSRN 523
            + L K+    E      + +S+ 
Sbjct: 815 IDSLGKEGRVEEAYYFFENSISKG 838



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 144/316 (45%), Gaps = 39/316 (12%)

Query: 160 LGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLF 219
           L  L+R        + A  +F +  +F C P+       Y  +++ L K GF +   ++F
Sbjct: 220 LTSLLRTFGSTNNVSGALEIFNQMKSFGCNPSTN----MYNFVLELLVKGGFYHSAVIVF 275

Query: 220 LDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDV 279
             +    I PDA  +    R++  + N     G    A E  +E +           P V
Sbjct: 276 GKLGQFRIQPDAQTF----RIFVHSFN---RSGRLDPAAEPIQEMIKSG------IDPGV 322

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
            ++  +I++L K   +D+A + F  MK+    P+VV Y++L++G    GR+++A ++FV 
Sbjct: 323 HTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVE 382

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN 399
           ++   C PD  +YNTLI+   K  + + A  L+ EM   G+ P+                
Sbjct: 383 MKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPN---------------- 426

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
                 L  +N ++  L K+ R   AW+LF  L   G  P+V TY  +I  L   G ++K
Sbjct: 427 ------LRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDK 480

Query: 460 AYDLLPDMEEKIRECL 475
              ++ +M EK  EC+
Sbjct: 481 VLAIIKEMVEKGGECI 496



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 108/269 (40%), Gaps = 31/269 (11%)

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
           V +Y  +I  L      D   ++   M   G    + + +SL+  +     +  A ++F 
Sbjct: 182 VGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVSGALEIFN 241

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL---------- 388
            ++S GC P T+ YN ++    K      A+ ++G++    ++PD               
Sbjct: 242 QMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSG 301

Query: 389 ---EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
               AAE  + +  +  +  +  F  L+D L KS  +  A + F  +      PNVVTYT
Sbjct: 302 RLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYT 361

Query: 446 VMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKR 487
            ++ GL   G +E+A ++  +M+E                  K  E   A  L  +M  R
Sbjct: 362 TLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDR 421

Query: 488 YVKPDEITVSILEELLNKDENCHECMNLL 516
            + P+  T +I+  +L K     E   L 
Sbjct: 422 GLVPNLRTYNIMISVLGKAGRQPEAWQLF 450


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 113/446 (25%), Positives = 203/446 (45%), Gaps = 47/446 (10%)

Query: 90  FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149
           +N+LL  +         + + + +   G+ PD  + ++L+   C+   ++ AF  L  + 
Sbjct: 349 WNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMK 408

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD 209
           ++  +P V+T   +I GLC  G     + +  + V    +    PN + Y +++    K+
Sbjct: 409 KRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLK----PNAVVYTTLMTAHAKE 464

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
           G V + R++   M+ +GI PD F YNSLI  +C A   E+A+      LE          
Sbjct: 465 GRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERR-------- 516

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
                  P+  +Y + I+   K   ++ A   F +M S G++P+V +Y++LI+G+C  G 
Sbjct: 517 -----LRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGN 571

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------ 383
           + +A  +F  I S   + D  +Y+ LI+  S+  K+ EA  ++ E+   G+ P+      
Sbjct: 572 VTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNS 631

Query: 384 ---NSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
               SC    + +A++L   +       D+  +N L+DGLCK+  +  A  LF  +   G
Sbjct: 632 LISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRG 691

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITV 496
             PN VTY  M+ G C                 K +    A +LL +M  R V PD    
Sbjct: 692 LTPNCVTYAAMVDGYC-----------------KSKNPTAAFQLLEEMLLRGVPPDAFIY 734

Query: 497 SILEELLNKDENCHECMNLLPSFLSR 522
           +++     K+E   + ++L    L +
Sbjct: 735 NVILNFCCKEEKFEKALDLFQEMLEK 760



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 130/443 (29%), Positives = 205/443 (46%), Gaps = 49/443 (11%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           ER+   G+LPD    N L+  FCK   + +A   L  +L +   P+  T G  I G    
Sbjct: 475 ERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKA 534

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G+   A   F + ++  C   V+PNV  Y ++I+G CK+G V +   +F  +  R +  D
Sbjct: 535 GEMEIADRYFNEMLS--C--GVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQD 590

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
              Y+ LI          +A G  S   EL E+        G++  P+  +Y S+I+  C
Sbjct: 591 VQTYSVLIHGLSRNGKMHEAFGIFS---ELQEK--------GLL--PNAFTYNSLISGSC 637

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K   VDKA +L  +M  +GI PD+V Y+ LIDG C  G I+ A+ LF  IE  G  P+  
Sbjct: 638 KQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCV 697

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------NSCILE-----AAELFRTL 397
           +Y  +++ Y K +    A  L  EM+  GV PD        N C  E     A +LF+ +
Sbjct: 698 TYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEM 757

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
               F   ++ FN L++G CKS +L+ A  L +++      PN VTYT +I   C  G +
Sbjct: 758 LEKGFASTVS-FNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMM 816

Query: 458 EKAYDLLPDMEEK------------------IRECLKAIELLHKMAKRYVKPDEITVSIL 499
            +A  L  +M+E+                  I    +   L  +M  + ++PD++T  ++
Sbjct: 817 GEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVM 876

Query: 500 EELLNKDENCHECMNLLPSFLSR 522
            +   ++ N  E   L    L +
Sbjct: 877 IDAYCREGNVMEACKLKDEILVK 899



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 117/492 (23%), Positives = 224/492 (45%), Gaps = 51/492 (10%)

Query: 44  VSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYY 103
           V  V++  ++L  + E ++     L++A+     M+     P + +++ L+     +K  
Sbjct: 237 VGNVKDAKRVLLEMGEKARL----LDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRS 292

Query: 104 VNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCL 163
                +   +  +GL P+ ++ N L++ F +   +  AF     ++      +++    L
Sbjct: 293 REAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTL 352

Query: 164 IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
           + G+C  GK  +A  +  + +       V P+   Y+ +I+G C+   + +   L  +MK
Sbjct: 353 LNGVCKAGKMEKALEIMQEMM----EKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMK 408

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
            R + P    Y+ +I   C   N +     T+A   L E  +NG         P+ + Y 
Sbjct: 409 KRKLAPTVLTYSVIINGLCRCGNLQ----GTNAI--LREMVMNG-------LKPNAVVYT 455

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
           +++ +  K+  V++++ +   M+ +GI+PDV  Y+SLI G+C   R+++AR   + +   
Sbjct: 456 TLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLER 515

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC----ILEA 390
              P+  +Y   I+ YSK  ++E A   + EM+S GV P         +  C    + EA
Sbjct: 516 RLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEA 575

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
             +FR + + +   D+  ++ L+ GL ++ ++  A+ +F +L   G  PN  TY  +I G
Sbjct: 576 FSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISG 635

Query: 451 LCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCH 510
            C +G ++KA  LL +M      C+K I            PD +T +IL + L K     
Sbjct: 636 SCKQGNVDKASQLLEEM------CIKGI-----------NPDIVTYNILIDGLCKAGEIE 678

Query: 511 ECMNLLPSFLSR 522
              NL      R
Sbjct: 679 RAKNLFDDIEGR 690



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 110/425 (25%), Positives = 190/425 (44%), Gaps = 43/425 (10%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALA-GKKYYVNFICLSERLNTIGLLPDFV 123
           E  + +A   F +++  +    + +++ L+  L+   K +  F   SE L   GLLP+  
Sbjct: 569 EGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSE-LQEKGLLPNAF 627

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           + N L++  CK   V  A   L  +  K  +PD+VT   LI GLC  G+   A  LF   
Sbjct: 628 TYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDI 687

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
                   + PN + YA+++DG CK         L  +M  RG+ PDAF+YN ++   C 
Sbjct: 688 EG----RGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCK 743

Query: 244 AVNWEDA---------KG-NTSAALELHEEFVNGNGELGVICH-----------PDVLSY 282
              +E A         KG  ++ +     E    +G+L    H           P+ ++Y
Sbjct: 744 EEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTY 803

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
            S+I+  CK  ++ +AK L+L+M+ R ++P    Y+SL+ GY  +G + +   LF  + +
Sbjct: 804 TSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVA 863

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF 402
           +G  PD  +Y  +I++Y +   V EA  L  E++  G+ P  S                F
Sbjct: 864 KGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGM-PMKS---------------GF 907

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
            L L   + +  G   +  +  A E+ + + ++G   N  +   ++ G       E + +
Sbjct: 908 RLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDGNQNGANSEDSDN 967

Query: 463 LLPDM 467
           LL  M
Sbjct: 968 LLKQM 972



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 166/364 (45%), Gaps = 48/364 (13%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ V  ++LM+ + KM  + +A           F P +++   L+ G  ++G   E   L
Sbjct: 152 PNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLL-GDLLKGNKVE---L 207

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F K     C   V+P+V  Y ++I   CK G V   + + L+M  +    D         
Sbjct: 208 FWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLD--------- 258

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
                            A+EL    V+     G++  PD+ +Y  +IN  C +    +AK
Sbjct: 259 ----------------EAIELKRSMVDK----GLV--PDLYTYDILINGFCMEKRSREAK 296

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            + L+M   G+ P+ + Y++LIDG+   G I+ A ++   + + G   +   +NTL+N  
Sbjct: 297 LMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGV 356

Query: 360 SKIEKVEEALSLYGEMISMGVRPDN---SCILE----------AAELFRTLHNTKFELDL 406
            K  K+E+AL +  EM+  GV PD+   S ++E          A EL   +   K    +
Sbjct: 357 CKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTV 416

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             ++ +++GLC+   L+    + +++   G +PN V YT ++     EG +E++  +L  
Sbjct: 417 LTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILER 476

Query: 467 MEEK 470
           M E+
Sbjct: 477 MREQ 480



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 146/317 (46%), Gaps = 57/317 (17%)

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN 213
           SP+ V    L+      G   EA  +F     F+ RP+++    C  S++  L K   V 
Sbjct: 151 SPNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLS---C-NSLLGDLLKGNKVE 206

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
               +F  M    + PD + Y ++I  +C   N +DAK      LE+ E           
Sbjct: 207 LFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAK---RVLLEMGE----------- 252

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
                            K  L+D+A EL   M  +G++PD+  Y  LI+G+C+  R  +A
Sbjct: 253 -----------------KARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREA 295

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAEL 393
           + + + +   G  P+  +YN LI+ + +   +E+A  +  EM++ G+             
Sbjct: 296 KLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGI------------- 342

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
                    E +L ++N L++G+CK+ ++  A E+ +++   G EP+  TY+++I G C 
Sbjct: 343 ---------EANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCR 393

Query: 454 EGGIEKAYDLLPDMEEK 470
              + +A++LL +M+++
Sbjct: 394 GQNMARAFELLDEMKKR 410



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 120/272 (44%), Gaps = 56/272 (20%)

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
            P +LS  S++  L K   V+   ++F  M +  ++PDV  Y+++I  +C +G + DA++
Sbjct: 186 RPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKR 245

Query: 336 LFV-----------------SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
           + +                 S+  +G +PD  +Y+ LIN +   ++  EA  +  EMI +
Sbjct: 246 VLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDV 305

Query: 379 GVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
           G++P+                         +N L+DG  +   +  A+ +  ++   G E
Sbjct: 306 GLKPEP----------------------ITYNALIDGFMRQGDIEQAFRIKDEMVACGIE 343

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSI 498
            N++ +  ++ G+C  G +EKA                 +E++ +M ++ V+PD  T S+
Sbjct: 344 ANLIIWNTLLNGVCKAGKMEKA-----------------LEIMQEMMEKGVEPDSQTYSL 386

Query: 499 LEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           L E   + +N      LL     R    + LT
Sbjct: 387 LIEGHCRGQNMARAFELLDEMKKRKLAPTVLT 418



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 56/113 (49%)

Query: 387 ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTV 446
           ++EA  +F    N +F   L   N L+  L K  ++   W++F  +  +   P+V TYT 
Sbjct: 170 LVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTN 229

Query: 447 MICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           MI   C  G ++ A  +L +M EK R   +AIEL   M  + + PD  T  IL
Sbjct: 230 MISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDIL 282


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 131/471 (27%), Positives = 212/471 (45%), Gaps = 63/471 (13%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           D+ C  + +  M    F+ +   L G  A K           R    G     +S N L+
Sbjct: 79  DSFCVNSILADMLVLAFVRNLKILRGFEAFK-----------RAGDYGFKLSLISCNPLL 127

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           +   K     D       ++++    +V++   ++ GLC  GK   A  +      +   
Sbjct: 128 SGLVKESENGDMEFVYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVW--- 184

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKV---RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             V PNVI Y ++IDG CK G + K+     +  +M  +GI P+   YN LI  +C    
Sbjct: 185 -GVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFC---- 239

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                 N S A+ +  E             P+V++Y  +IN LC D  VD+A  L   M 
Sbjct: 240 ---KDENVSGAMRVFGEMQRQG------LRPNVVTYNILINGLCSDGKVDEAVALRDQMV 290

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           S  + P+VV ++ LI+G+C    +++A  LF  +E +G  P+  +Y TLI++Y K  ++E
Sbjct: 291 SSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRME 350

Query: 367 EALSLYGEMISMGVRPDNS---CIL----------EAAELFRTLHNTKFELDLTVFNCLV 413
           +A +LY  MI  G+ P+ S   C++           A  L   + + K   D+  +N L+
Sbjct: 351 DAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILI 410

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
           D LCK    R A +L  ++   G  P+ VTY  ++ G C EG +  A  +   ME K ++
Sbjct: 411 DSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQ 470

Query: 474 -------------CLK-----AIELLHKMAKRYVKPDEITVSIL-EELLNK 505
                        CLK     A  LL++M +R + P+  T  I+ EE++ K
Sbjct: 471 ANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEIIKEEMMEK 521



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 109/251 (43%), Gaps = 17/251 (6%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++++A+   + M+     P + + N L+      K     I L   +   G+ P+ ++  
Sbjct: 278 KVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYT 337

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ +CK   + DAF     ++ +   P+V T  CLI GLC +G    A  L  + V+ 
Sbjct: 338 TLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVS- 396

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                +  +V+ Y  +ID LCK G   K   L  +M  +G+ P    YN+L+  YC    
Sbjct: 397 ---KKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYC---- 449

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
               +GN  AAL +         +  V+ H        +I   C    ++ A  L  +M 
Sbjct: 450 ---REGNLRAALIVRTRMERKGKQANVVTHN------VLIKGFCLKGRLEDANGLLNEML 500

Query: 307 SRGIIPDVVVY 317
            RG++P+   Y
Sbjct: 501 ERGLVPNRTTY 511



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 14/124 (11%)

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
           ++R +   K EL++  FN +V+GLCK  +L  A ++ + +  +G  PNV+TY  +I G C
Sbjct: 142 VYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYC 201

Query: 453 IEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHEC 512
             G I K Y              KA  +L +M  + + P+E+T +IL +   KDEN    
Sbjct: 202 KMGRIGKMY--------------KADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGA 247

Query: 513 MNLL 516
           M + 
Sbjct: 248 MRVF 251


>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
 gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
          Length = 761

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 120/454 (26%), Positives = 205/454 (45%), Gaps = 56/454 (12%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           + AL   N M+         ++ +++     + Y V    L   +  IG+ PD  + N L
Sbjct: 163 HSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDMLRIGIFPDVSTFNKL 222

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           ++  CK   V ++   L ++L+K    ++ T    I+GLC +G  + A  +    +    
Sbjct: 223 LHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVI---- 278

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
           R  + P+V+ Y ++I GLCK+  V +       +   G+ PD F YN+LI  YC      
Sbjct: 279 REGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYC------ 332

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
                    L+  E+ + G    G +  PD  +YCS+IN LC++  +D+A  LF     +
Sbjct: 333 -----KMGMLQNAEKILQGAICKGFV--PDEFTYCSLINGLCQNDEIDRALALFNAALGK 385

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G+ P V++Y+ LI G C  G I  A ++   +   GC  D  +YN +IN   K+  V +A
Sbjct: 386 GLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDA 445

Query: 369 LSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
            +L  + I+ G  P                      D+  FN L+DG CK  ++ +  ++
Sbjct: 446 NNLMNDAIAKGYVP----------------------DVFTFNTLIDGYCKQLKMETTIQI 483

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRY 488
             K+  +G  P+V+TY  ++ GL       K  DL+              E    M ++ 
Sbjct: 484 LNKMWSHGVTPDVITYNSVLNGL---SKAVKNEDLM--------------ETFETMVEKG 526

Query: 489 VKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
             P++IT +IL E L K    +E ++L+   L++
Sbjct: 527 CVPNKITYNILTESLCKAGKVNEALDLVDEILNK 560



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 125/465 (26%), Positives = 209/465 (44%), Gaps = 50/465 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+ A+   + +I    TP + ++N+L+  L      V       +L   GL PD  + N 
Sbjct: 267 LSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNT 326

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++ +CKM  + +A   L   + K F PD  T   LI GLC   +   A  LF   +   
Sbjct: 327 LIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALG-- 384

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               + P VI Y  +I GLC++G + +   +  +M   G   D + YN +I   C     
Sbjct: 385 --KGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCV 442

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
            DA    + A+   + +V           PDV ++ ++I+  CK + ++   ++   M S
Sbjct: 443 SDANNLMNDAIA--KGYV-----------PDVFTFNTLIDGYCKQLKMETTIQILNKMWS 489

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            G+ PDV+ Y+S+++G     + +D  + F ++  +GC+P+  +YN L  S  K  KV E
Sbjct: 490 HGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVNE 549

Query: 368 ALSLYGEMISMGVRPD-------------NSCILEAAELFRTL-HNTKFELDLTVFNCLV 413
           AL L  E+++ G+ PD             N  +  A +LFR +    K       +N ++
Sbjct: 550 ALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVSHTTATYNIMI 609

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK--- 470
           +   +   L    +LF ++   G  P+  TY VMI G CI G  +  Y  L +M EK   
Sbjct: 610 NAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFLLEMIEKGFI 669

Query: 471 --------IRECL-------KAIELLHKMAKRYVKPDEITVSILE 500
                   +  CL       +A++++H M    + P E+  SI E
Sbjct: 670 PSLTTFGRVINCLCVQHRVHEAVDIIHFMVHNGIVP-EVVNSISE 713



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 119/416 (28%), Positives = 186/416 (44%), Gaps = 30/416 (7%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           +A   FN M+ +   P + +FN LL  L  K        L  ++   G+  +  + NI +
Sbjct: 199 EAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFI 258

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
              C+   +S A   L  ++R+  +PDVVT   LI GLC      EA     K V     
Sbjct: 259 QGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLV----N 314

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
             + P+   Y ++IDG CK G +     +      +G  PD F Y SLI   C       
Sbjct: 315 GGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLC------- 367

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
                  AL L       N  LG    P V+ Y  +I  LC++ L+ +A ++  +M   G
Sbjct: 368 QNDEIDRALALF------NAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENG 421

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
              D+  Y+ +I+G C MG + DA  L     ++G +PD  ++NTLI+ Y K  K+E  +
Sbjct: 422 CSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTI 481

Query: 370 SLYGEMISMGVRPD----NSCI--LEAA-------ELFRTLHNTKFELDLTVFNCLVDGL 416
            +  +M S GV PD    NS +  L  A       E F T+       +   +N L + L
Sbjct: 482 QILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESL 541

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIR 472
           CK+ ++  A +L  ++   G  P+ V++  +I G    G ++ AY L   M E+ +
Sbjct: 542 CKAGKVNEALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYK 597



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 95/397 (23%), Positives = 176/397 (44%), Gaps = 40/397 (10%)

Query: 131 CFCKMIGVSDAFVALGRILRKVFSP------DVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
           C  + +G    FVA+  +L +          + V +G + +    +GK  EA  +F +  
Sbjct: 45  CIIQKLGFHGNFVAMENVLAETRMDIDNSLLEGVYIGAM-KSYGRKGKVQEAVDVFERMD 103

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
            ++C P+V+     Y +I++ L + G+  +   +FL MK  GI PD + +   I+ +C  
Sbjct: 104 FYNCEPSVLS----YNAIMNILVESGYFKQAHKVFLRMKNVGIVPDVYTFTIRIKSFC-- 157

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                      +AL L    V+        C  + ++YC+++    ++    +A ELF D
Sbjct: 158 -----RTKRPHSALRLLNNMVSQG------CQLNAVAYCTVVAGFYEENYRVEAYELFND 206

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M   GI PDV  ++ L+   C  G + ++ +L   +  +G   +  ++N  I    +   
Sbjct: 207 MLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGM 266

Query: 365 VEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNC 411
           +  A+S+   +I  G+ PD             NS ++EA +    L N   E D   +N 
Sbjct: 267 LSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNT 326

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI 471
           L+DG CK   L++A ++ +     G  P+  TY  +I GLC    I++A  L       +
Sbjct: 327 LIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALF---NAAL 383

Query: 472 RECLKAIELLHKMAKRYVKPDEITVSILEELLNKDEN 508
            + LK   +L+ M  + +  + + +  L+ +    EN
Sbjct: 384 GKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSEN 420



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 149/348 (42%), Gaps = 43/348 (12%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E++ AL  FN  +     P +  +N L+  L  +   +  + +   ++  G   D  + N
Sbjct: 371 EIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYN 430

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +++N  CKM  VSDA   +   + K + PDV T   LI G C Q K      +  K  + 
Sbjct: 431 LVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSH 490

Query: 187 DCRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKV 215
              P+VI                               PN I Y  + + LCK G VN+ 
Sbjct: 491 GVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEA 550

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
             L  ++  +GI PD   + ++I  +    N  D KG    A +L        GE   + 
Sbjct: 551 LDLVDEILNKGITPDTVSFATIISGF---ANNGDLKG----AYQLFRRM----GEQYKVS 599

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
           H    +Y  +IN+  + + +   ++LFL+M + G  PD   Y  +IDG+C+ G  D   K
Sbjct: 600 HTTA-TYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYK 658

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
             + +  +G IP  +++  +IN      +V EA+ +   M+  G+ P+
Sbjct: 659 FLLEMIEKGFIPSLTTFGRVINCLCVQHRVHEAVDIIHFMVHNGIVPE 706


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 114/415 (27%), Positives = 201/415 (48%), Gaps = 35/415 (8%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E++ AL     M      P    + +L+ +L+        + L E +  +G +PD  + N
Sbjct: 232 EIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFN 291

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            ++   CK   +++A   + R+L + F+PD +T G L+ GLC  G+   A  LF +    
Sbjct: 292 DVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK- 350

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM-KGRGIYPDAFVYNSLIRVYCCAV 245
                  P ++ + ++I G    G ++  + +  DM    GI PD   YNSLI  Y    
Sbjct: 351 -------PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGY---- 399

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
            W++  G    ALE+  +  N        C P+V SY  +++  CK   +D+A  +  +M
Sbjct: 400 -WKE--GLVGLALEVLHDMRNKG------CKPNVYSYTILVDGFCKLGKIDEAYNVLNEM 450

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
            + G+ P+ V ++ LI  +C   RI +A ++F  +  +GC PD  ++N+LI+   +++++
Sbjct: 451 SADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEI 510

Query: 366 EEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDLTVFNCL 412
           + AL L  +MIS GV  +                I EA +L   +      LD   +N L
Sbjct: 511 KHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSL 570

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           + GLC++  +  A  LF+K+ R G  P+ ++  ++I GLC  G +E+A +   +M
Sbjct: 571 IKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEM 625



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 119/442 (26%), Positives = 196/442 (44%), Gaps = 45/442 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            +N+AL     M  M   P   +FN ++  L           +  R+   G  PD ++  
Sbjct: 267 RVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYG 326

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            LMN  CK IG  DA   L     ++  P++V    LI G    G+  +A  + +  V  
Sbjct: 327 YLMNGLCK-IGRVDAAKDL---FYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVT- 381

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                ++P+V  Y S+I G  K+G V     +  DM+ +G  P+ + Y  L+  +C    
Sbjct: 382 --SYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGK 439

Query: 247 WEDAKG--NTSAALELHEEFVNGNGELGVICH--------------------PDVLSYCS 284
            ++A    N  +A  L    V  N  +   C                     PDV ++ S
Sbjct: 440 IDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNS 499

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           +I+ LC+   +  A  L  DM S G++ + V Y++LI+ +   G I +ARKL   +  +G
Sbjct: 500 LISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQG 559

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN-SC------------ILEAA 391
              D  +YN+LI    +  +V++A SL+ +M+  G  P N SC            + EA 
Sbjct: 560 SPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAV 619

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
           E  + +       D+  FN L++GLC++ R+     +F+KL   G  P+ VT+  ++  L
Sbjct: 620 EFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWL 679

Query: 452 CIEGGIEKAYDLLPDMEEKIRE 473
           C +GG    YD    ++E I +
Sbjct: 680 C-KGGF--VYDACLLLDEGIED 698



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/406 (25%), Positives = 189/406 (46%), Gaps = 33/406 (8%)

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           F  M+  +  P + +F  ++ A        + + L   +   G +P+ V    L++   K
Sbjct: 205 FYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSK 264

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
              V++A   L  +      PD  T   +I GLC   +  EA+ +  + +         P
Sbjct: 265 CNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLI----RGFAP 320

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           + I Y  +++GLCK G V+  + LF     R   P+  ++N+LI  +      +DAK   
Sbjct: 321 DDITYGYLMNGLCKIGRVDAAKDLFY----RIPKPEIVIFNTLIHGFVTHGRLDDAKAVL 376

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
           S  +  +          G++  PDV +Y S+I    K+ LV  A E+  DM+++G  P+V
Sbjct: 377 SDMVTSY----------GIV--PDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNV 424

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
             Y+ L+DG+C +G+ID+A  +   + ++G  P+T  +N LI+++ K  ++ EA+ ++ E
Sbjct: 425 YSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFRE 484

Query: 375 MISMGVRPD----NSC---------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
           M   G +PD    NS          I  A  L R + +     +   +N L++   +   
Sbjct: 485 MPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGE 544

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           ++ A +L  ++   G   + +TY  +I GLC  G ++KA  L   M
Sbjct: 545 IKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKM 590



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 142/290 (48%), Gaps = 22/290 (7%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL P+ V  N L++ FCK   + +A      + RK   PDV T   LI GLC   +   A
Sbjct: 454 GLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHA 513

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L    ++      V+ N + Y ++I+   + G + + R L  +M  +G   D   YNS
Sbjct: 514 LWLLRDMIS----EGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNS 569

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFV-NGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           LI+  C A       G    A  L E+ + +G+    + C+        +IN LC+  +V
Sbjct: 570 LIKGLCRA-------GEVDKARSLFEKMLRDGHAPSNISCN-------ILINGLCRSGMV 615

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           ++A E   +M  RG  PD+V ++SLI+G C  GRI+D   +F  +++EG  PDT ++NTL
Sbjct: 616 EEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTL 675

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDN---SCILEAAELFRTLHNTKF 402
           ++   K   V +A  L  E I  G  P++   S +L++     TL   +F
Sbjct: 676 MSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSIIPQETLDRRRF 725



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 169/380 (44%), Gaps = 31/380 (8%)

Query: 83  PTPFMPSFNSLL-GALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDA 141
           P P +  FN+L+ G +   +       LS+ + + G++PD  + N L+  + K   V  A
Sbjct: 349 PKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLA 408

Query: 142 FVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYAS 201
              L  +  K   P+V +   L+ G C  GK  EA  +  +  A      + PN + +  
Sbjct: 409 LEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSA----DGLKPNTVGFNC 464

Query: 202 IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261
           +I   CK+  + +   +F +M  +G  PD + +NSLI   C              AL L 
Sbjct: 465 LISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLC-------EVDEIKHALWLL 517

Query: 262 EEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
            + ++     GV+   + ++Y ++IN+  +   + +A++L  +M  +G   D + Y+SLI
Sbjct: 518 RDMISE----GVVA--NTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLI 571

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
            G C  G +D AR LF  +  +G  P   S N LIN   +   VEEA+    EM+  G  
Sbjct: 572 KGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGST 631

Query: 382 PD----NSCI---------LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
           PD    NS I          +   +FR L       D   FN L+  LCK   +  A  L
Sbjct: 632 PDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLL 691

Query: 429 FKKLPRYGPEPNVVTYTVMI 448
             +    G  PN  T+++++
Sbjct: 692 LDEGIEDGFVPNHRTWSILL 711



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 101/390 (25%), Positives = 171/390 (43%), Gaps = 66/390 (16%)

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           V L IL++  C  +  +  +  L R +     P + T G +++  C   +   A  L   
Sbjct: 187 VVLEILVSGNCHKVAANVFYDMLSRKI----PPTLFTFGVVMKAFCAVNEIDSALSLLRD 242

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
                C    +PN + Y ++I  L K   VN+   L  +M   G  PDA  +N +I   C
Sbjct: 243 MTKHGC----VPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLC 298

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
                +  + N +A + ++   + G         PD ++Y  ++N LCK   VD AK+LF
Sbjct: 299 -----KFDRINEAAKM-VNRMLIRGFA-------PDDITYGYLMNGLCKIGRVDAAKDLF 345

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS-IESEGCIPDTSSYNTLINSYSK 361
             +      P++V++++LI G+   GR+DDA+ +    + S G +PD  +YN+LI  Y K
Sbjct: 346 YRIPK----PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWK 401

Query: 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
              V  AL +  +M + G +P+                      +  +  LVDG CK  +
Sbjct: 402 EGLVGLALEVLHDMRNKGCKPN----------------------VYSYTILVDGFCKLGK 439

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELL 481
           +  A+ +  ++   G +PN V +  +I   C               E +I E   A+E+ 
Sbjct: 440 IDEAYNVLNEMSADGLKPNTVGFNCLISAFC--------------KEHRIPE---AVEIF 482

Query: 482 HKMAKRYVKPDEITV-SILEELLNKDENCH 510
            +M ++  KPD  T  S++  L   DE  H
Sbjct: 483 REMPRKGCKPDVYTFNSLISGLCEVDEIKH 512



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 118/270 (43%), Gaps = 17/270 (6%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  + +A+  F  M      P + +FNSL+  L       + + L   + + G++ + V+
Sbjct: 472 EHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVT 531

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N L+N F +   + +A   +  ++ +    D +T   LI+GLC  G+  +A  LF K +
Sbjct: 532 YNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKML 591

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
               R    P+ I    +I+GLC+ G V +      +M  RG  PD   +NSLI   C A
Sbjct: 592 ----RDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRA 647

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
              ED     +   +L  E +           PD +++ ++++ LCK   V  A  L  +
Sbjct: 648 GRIEDG---LTMFRKLQAEGI----------PPDTVTFNTLMSWLCKGGFVYDACLLLDE 694

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
               G +P+   +S L+        +D  R
Sbjct: 695 GIEDGFVPNHRTWSILLQSIIPQETLDRRR 724



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 81/216 (37%), Gaps = 32/216 (14%)

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
           VY  LI      G      +L + ++ EG +   S + +++  Y K     +   L  EM
Sbjct: 113 VYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEM 172

Query: 376 --------------ISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
                         + + +    +C   AA +F  + + K    L  F  ++   C    
Sbjct: 173 RNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNE 232

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL---------PDMEE--- 469
           + SA  L + + ++G  PN V Y  +I  L     + +A  LL         PD E    
Sbjct: 233 IDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFND 292

Query: 470 ------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                 K     +A +++++M  R   PD+IT   L
Sbjct: 293 VILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYL 328


>gi|242047600|ref|XP_002461546.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
 gi|241924923|gb|EER98067.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
          Length = 532

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 121/420 (28%), Positives = 193/420 (45%), Gaps = 47/420 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ P+ V+ N +++  CK+  +  A   L +++ +   P+  T   LI G    G++TEA
Sbjct: 151 GIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEA 210

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             +  +      R    PNV+ Y  +ID LCK GF  + R +F  M   G  PDA  Y S
Sbjct: 211 VRILKEM----SRDGQRPNVVTYNMLIDCLCKSGFHAEAREIFNSMIQSGPKPDATTYGS 266

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           L+  Y         +GN      + +  V  NG        +  ++   I + CK   +D
Sbjct: 267 LLHGYA-------TEGNLVEMNNVKDLMVQ-NG-----MRSNHHTFSIEIYAYCKCGRLD 313

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A   F+ M+  G +PD+V Y+++IDG C +GR+DDA   F  +  +G  P+  ++ TLI
Sbjct: 314 EASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLI 373

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           + +S   K E+A  L+ EM+  G+ P                      D+T+F  ++D L
Sbjct: 374 HGFSMYGKWEKAEELFYEMMDRGIPP----------------------DVTIFTAMIDRL 411

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLK 476
            K  ++  A +LF  +PR G +PNVV+Y  MI G  I G + +   LL DM   +   LK
Sbjct: 412 FKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDM---LLIGLK 468

Query: 477 AIE-----LLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLTR 531
                   LL  M    +KPD  T   L +   +D    + + L    L +  +   +T 
Sbjct: 469 PTAVTFNTLLDGMVSMGLKPDVDTCKTLIDSCCEDGRIEDILTLFREMLGKADKTDTITE 528



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 145/338 (42%), Gaps = 71/338 (21%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD  +  IL++C C    ++  F ALG+I++     D V    L+R LC + + ++A   
Sbjct: 11  PDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRADAVAFTPLLRTLCAKKRTSDA--- 67

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
                                              + ++   M   G  PD F Y++L++
Sbjct: 68  -----------------------------------MNIVLRRMPELGCTPDVFSYSTLLK 92

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C     E+A            E ++   E G  C PDV+SY ++I+   K+  V KA 
Sbjct: 93  GLCAEKKCEEAA-----------ELIHMMAEDGDNCPPDVVSYSTVIHGFFKEGDVGKAY 141

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            LF  M   GI P+VV  +S+IDG C +  +D A  +   +  E  +P+ ++YN+LI+ Y
Sbjct: 142 TLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGY 201

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
               +  EA+ +  EM   G RP                      ++  +N L+D LCKS
Sbjct: 202 LSSGQWTEAVRILKEMSRDGQRP----------------------NVVTYNMLIDCLCKS 239

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                A E+F  + + GP+P+  TY  ++ G   EG +
Sbjct: 240 GFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNL 277



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 175/383 (45%), Gaps = 28/383 (7%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A      MI     P   ++NSL+        +   + + + ++  G  P+ V+ N+
Sbjct: 172 MDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNM 231

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++C CK    ++A      +++    PD  T G L+ G   +G   E + +    V   
Sbjct: 232 LIDCLCKSGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNG 291

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            R N       ++  I   CK G +++  + F+ M+  G  PD   Y ++I   C     
Sbjct: 292 MRSNHHT----FSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRL 347

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           +DA    S   ++ ++ ++          P+++++ ++I+        +KA+ELF +M  
Sbjct: 348 DDA---MSRFCQMIDDGLS----------PNIITFTTLIHGFSMYGKWEKAEELFYEMMD 394

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           RGI PDV +++++ID     G++ +A+KLF  +   G  P+  SYNT+I+ Y    +V E
Sbjct: 395 RGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGE 454

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL----DLTVFNCLVDGLCKSWRLR 423
            + L  +M+ +G++P        A  F TL +    +    D+     L+D  C+  R+ 
Sbjct: 455 VMKLLDDMLLIGLKP-------TAVTFNTLLDGMVSMGLKPDVDTCKTLIDSCCEDGRIE 507

Query: 424 SAWELFKKLPRYGPEPNVVTYTV 446
               LF+++     + + +T  +
Sbjct: 508 DILTLFREMLGKADKTDTITENI 530



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 155/351 (44%), Gaps = 49/351 (13%)

Query: 49  EKTKLLKYLSENSKSGEV----ELNDALC----------FFNYMIHMQPTPFMPSFNSLL 94
           E  ++LK +S + +   V     L D LC           FN MI   P P   ++ SLL
Sbjct: 209 EAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEAREIFNSMIQSGPKPDATTYGSLL 268

Query: 95  GALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFS 154
              A +   V    + + +   G+  +  + +I +  +CK   + +A +   ++ +  F 
Sbjct: 269 HGYATEGNLVEMNNVKDLMVQNGMRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFM 328

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
           PD+VT   +I GLC  G+  +A   F + +       + PN+I + ++I G    G   K
Sbjct: 329 PDIVTYTTVIDGLCKIGRLDDAMSRFCQMI----DDGLSPNIITFTTLIHGFSMYGKWEK 384

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLI-RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
              LF +M  RGI PD  ++ ++I R++         +G  + A +L +       +   
Sbjct: 385 AEELFYEMMDRGIPPDVTIFTAMIDRLF--------KEGKVTEAQKLFDLMPRAGAK--- 433

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
              P+V+SY ++I+       V +  +L  DM   G+ P  V +++L+DG          
Sbjct: 434 ---PNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDG---------- 480

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
                 + S G  PD  +  TLI+S  +  ++E+ L+L+ EM+    + D 
Sbjct: 481 ------MVSMGLKPDVDTCKTLIDSCCEDGRIEDILTLFREMLGKADKTDT 525



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 107/248 (43%), Gaps = 39/248 (15%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PD+ ++  +I+  C    ++        +   G+  D V ++ L+   C   R  DA  +
Sbjct: 11  PDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRADAVAFTPLLRTLCAKKRTSDAMNI 70

Query: 337 FVSIESE-GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395
            +    E GC PD  SY+TL+      +K EEA     E+I M     ++C         
Sbjct: 71  VLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEA----AELIHMMAEDGDNC--------- 117

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
                    D+  ++ ++ G  K   +  A+ LF K+  +G  PNVVT   +I GLC   
Sbjct: 118 -------PPDVVSYSTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQ 170

Query: 456 GIEKAYDLLPDM-EEKIR-----------------ECLKAIELLHKMAKRYVKPDEITVS 497
            ++KA  +L  M +E I                  +  +A+ +L +M++   +P+ +T +
Sbjct: 171 AMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYN 230

Query: 498 ILEELLNK 505
           +L + L K
Sbjct: 231 MLIDCLCK 238


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 123/421 (29%), Positives = 194/421 (46%), Gaps = 54/421 (12%)

Query: 53  LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVN-----FI 107
           L++Y     +SG+  L+ A+  F  M      P   ++  L+ AL GK   V      F 
Sbjct: 106 LIRYFG---RSGQ--LDSAMEMFREMKIKGSEPDEYTYGFLVNAL-GKAGRVQEARSFFD 159

Query: 108 CLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGL 167
            + ER    GL P+  + N+LM+ F K+  +  A      + R+ F P VVT   L+  L
Sbjct: 160 AMLER----GLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDAL 215

Query: 168 CMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI 227
           C  G+   A  LF K     C     P+   Y+++++GL K G V +   +F +M  RG+
Sbjct: 216 CSAGRVGAARKLFHKMTGDGCS----PDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGV 271

Query: 228 YPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIIN 287
             D   YNSL+     A       GN     +L +E            HPD  S+ +I++
Sbjct: 272 AVDLVNYNSLLATLAKA-------GNMDRVWKLMKEMSRKG------FHPDAFSFNTIMD 318

Query: 288 SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
           +L K    D A+E+F  M   G  PD++ Y+ LID Y   G    AR++   +   G IP
Sbjct: 319 ALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIP 378

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLT 407
           +T +YN+LI+  +   +V+EA ++  EM + G RP                      D+ 
Sbjct: 379 ETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRP----------------------DVV 416

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            +N L+D L K    + A  LF+++   G EP+ ++Y V I GL  +  +++A  L  DM
Sbjct: 417 TYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDM 476

Query: 468 E 468
           +
Sbjct: 477 K 477



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 118/483 (24%), Positives = 202/483 (41%), Gaps = 62/483 (12%)

Query: 52  KLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSE 111
           KL+      +KSG     DA   FN       +P + +F  L+  L     +     + +
Sbjct: 35  KLITAYGRGNKSG-----DAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYK 89

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           +L   G   D  + N+L+  F +   +  A      +  K   PD  T G L+  L   G
Sbjct: 90  KLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAG 149

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
           +  EA   F   +       + PN+  Y  ++D   K G ++    LF +MK RG  P  
Sbjct: 150 RVQEARSFFDAML----ERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSV 205

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
             YN L+   C A       G   AA +L  + + G+G     C PD  +Y +++N L K
Sbjct: 206 VTYNILLDALCSA-------GRVGAARKLFHK-MTGDG-----CSPDSYTYSTLVNGLGK 252

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
              V++A ++F +M  RG+  D+V Y+SL+      G +D   KL   +  +G  PD  S
Sbjct: 253 SGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFS 312

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNC 411
           +NT++++  K  K + A  ++  M+  G +P                      DL  +N 
Sbjct: 313 FNTIMDALGKANKPDAAREVFARMVESGCKP----------------------DLISYNI 350

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE-- 469
           L+D   +      A ++ +++   G  P   TY  +I  L  +G +++A+ +L +ME   
Sbjct: 351 LIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAG 410

Query: 470 ----------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECM 513
                           K  E  +A  L  +M  + V+PD ++ ++  + L  D+   E +
Sbjct: 411 CRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEAL 470

Query: 514 NLL 516
            L 
Sbjct: 471 VLF 473



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 112/434 (25%), Positives = 187/434 (43%), Gaps = 48/434 (11%)

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+  + +     DAF    +      SP V     LI  L   G+F  A  ++ K V   
Sbjct: 36  LITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKG 95

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C+ +       Y  +I    + G ++    +F +MK +G  PD + Y  L+     A   
Sbjct: 96  CQLDRF----AYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRV 151

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           ++A+    A LE                 P++ +Y  ++++  K   +D A  LF +MK 
Sbjct: 152 QEARSFFDAMLERG-------------LTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKR 198

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           RG  P VV Y+ L+D  C  GR+  ARKLF  +  +GC PD+ +Y+TL+N   K  +VEE
Sbjct: 199 RGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEE 258

Query: 368 ALSLYGEMISMGVRPD----NSCILEAA---------ELFRTLHNTKFELDLTVFNCLVD 414
           A  ++ EM+  GV  D    NS +   A         +L + +    F  D   FN ++D
Sbjct: 259 AHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMD 318

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM------- 467
            L K+ +  +A E+F ++   G +P++++Y ++I      G   +A  +L +M       
Sbjct: 319 ALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIP 378

Query: 468 EEKIRECL-----------KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           E K    L           +A  +L +M     +PD +T + L ++L K         L 
Sbjct: 379 ETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLF 438

Query: 517 PSFLSRNQEESKLT 530
                +  E   L+
Sbjct: 439 QQMKDKGVEPDTLS 452



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 161/347 (46%), Gaps = 40/347 (11%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
            K+G V+  +A  FF+ M+    TP +P++N L+ A          + L   +   G  P
Sbjct: 146 GKAGRVQ--EARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQP 203

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
             V+ NIL++  C    V  A     ++     SPD  T   L+ GL   G+  EA  +F
Sbjct: 204 SVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVF 263

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            + V       V  +++ Y S++  L K G +++V  L  +M  +G +PDAF +N+++  
Sbjct: 264 REMVD----RGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDA 319

Query: 241 YCCAVNWEDAK----------------------------GNTSAALELHEEFVNGNGELG 272
              A   + A+                            G+ + A ++ EE V    E G
Sbjct: 320 LGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMV----EAG 375

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
            I  P+  +Y S+I+ L  D  VD+A  +  +M++ G  PDVV Y+ L+D     G    
Sbjct: 376 FI--PETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQR 433

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           A +LF  ++ +G  PDT SY   I+  +  ++++EAL L+ +M ++G
Sbjct: 434 AARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVG 480


>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 772

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 121/478 (25%), Positives = 210/478 (43%), Gaps = 79/478 (16%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           SK GE+E    L     M++        ++N L+     K  +V    L E +      P
Sbjct: 261 SKKGELEQAKGL--IEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFP 318

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
              + N LM   CK + V+   +    +L+  F+PD+V+   L+ G C  G  +EA   F
Sbjct: 319 TLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEA---F 375

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR- 239
             F    CR +++P VI Y ++I GLC  G+++    L  +M  +G++PD F Y  L+  
Sbjct: 376 LLFDELKCR-DLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNG 434

Query: 240 ---------------------------VYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
                                       Y   +  E    +TS A  + EE       L 
Sbjct: 435 CFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEM------LA 488

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
               PDV++Y   +++LC+    ++A +L  +M S G+IPD V Y+S+I+G+   G +  
Sbjct: 489 AGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRK 548

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392
           AR++F  + S+G  P   +Y  LI++++  + ++ A   + +M+   V P N        
Sbjct: 549 AREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSV-PAN-------- 599

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
                        +  +N +++GLC + R+  A++ F ++   G  PN  +YT++I   C
Sbjct: 600 -------------VITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESC 646

Query: 453 IEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCH 510
             G  E                 +A+ L  +M  R ++PD  T S+  + L++D   H
Sbjct: 647 NMGYWE-----------------EALRLYREMLDRKIQPDSFTHSVFLKNLHRDYQVH 687



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 185/412 (44%), Gaps = 30/412 (7%)

Query: 72  LCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131
           L  F+ MI     P + + N +L  L  +        +   +   G+ P  V+ N +++ 
Sbjct: 165 LLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDS 224

Query: 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
           +CK   V  A   L  +  +   P+ VT   L+ GL  +G+  +A GL  + +  +   N
Sbjct: 225 YCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEML--NSGLN 282

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
           V  +   Y  +I+G C+ G   +   L  +M  R  +P    YN+L+   C  V     +
Sbjct: 283 V--SAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVR 340

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
              S  L+   +F            PD++S+ S++   C+   + +A  LF ++K R ++
Sbjct: 341 LRFSDMLK--SKFT-----------PDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLV 387

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           P V+ Y++LI G C+ G +D A +L   +  +G  PD  +Y  L+N   K+  V  A   
Sbjct: 388 PTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGF 447

Query: 372 YGEMISMGVRPD----NSCILEAAELFRT---------LHNTKFELDLTVFNCLVDGLCK 418
           + EM+S G++PD    N+ I+   ++  T         +    F  D+  +N  V  LC+
Sbjct: 448 FNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQ 507

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
                 A +L + +   G  P+ VTYT +I G    G + KA ++  +M  K
Sbjct: 508 QGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSK 559


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 128/526 (24%), Positives = 221/526 (42%), Gaps = 75/526 (14%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           + DAL   + M      P  P ++ +L A      + + + + E L+  G   D  + N+
Sbjct: 175 IADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNL 234

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++N  C    V +A   L  +      PDVV+   +++GLCM  ++     L  + V   
Sbjct: 235 VLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMA 294

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
           C PN++                               P++  YA+IIDG+CK+G +    
Sbjct: 295 CPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAH 354

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            +   M   G+ P+   YN+L++  C A  WE+ +       EL  E  + +      C 
Sbjct: 355 EILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETE-------ELLAEMFDKD------CP 401

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
            D +++  +++  C++ LVD+  EL   M   G +PDV+ Y+++I+G+C  G ID+A  L
Sbjct: 402 LDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVML 461

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG--VRP-----------D 383
             S+ + GC P+T SY  ++      E+  +A  L  +MI  G  + P            
Sbjct: 462 LKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCK 521

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
              + +A EL + +       DL  ++ ++DGL K+ +   A EL   +   G  PN + 
Sbjct: 522 KGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTII 581

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMA 485
           Y+ +   L  EG I K   +  ++++                  K  E  +AIE L  M 
Sbjct: 582 YSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMV 641

Query: 486 KRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLTR 531
                P+E T +IL   L  +    E   +L    S+      L +
Sbjct: 642 SSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKGALRKHLMK 687



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 147/327 (44%), Gaps = 32/327 (9%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDG-FVN 213
           P+  T   ++R LC +G+  +A  +  +     C P  IP +  Y  I++  C+ G F +
Sbjct: 157 PNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAP--IPPM--YHVILEAACRGGGFRS 212

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
            VRVL  D+  RG   D    N ++   C        +G+   AL L  +  +       
Sbjct: 213 AVRVLE-DLHARGCALDVGNCNLVLNAIC-------DQGSVDEALHLLRDLPSFG----- 259

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
            C PDV+SY +++  LC        +EL  +M      P++V +++LI   C  G  +  
Sbjct: 260 -CEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERV 318

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI------ 387
            ++   +   GC PD   Y T+I+   K   +E A  +   M S G++P+  C       
Sbjct: 319 HEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKG 378

Query: 388 -------LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
                   E  EL   + +    LD   FN LVD  C++  +    EL +++  +G  P+
Sbjct: 379 LCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPD 438

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDM 467
           V+TYT +I G C EG I++A  LL  M
Sbjct: 439 VITYTTVINGFCKEGLIDEAVMLLKSM 465



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 158/382 (41%), Gaps = 70/382 (18%)

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           ++ G C  G+   A  L            V PN   Y  ++  LC  G +     +  +M
Sbjct: 133 MVAGYCRAGQLESARRLAAAV-------PVPPNAYTYFPVVRALCARGRIADALAVLDEM 185

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
             RG  P   +Y+ ++   C         G  SA   L +    G       C  DV + 
Sbjct: 186 PRRGCAPIPPMYHVILEAAC------RGGGFRSAVRVLEDLHARG-------CALDVGNC 232

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
             ++N++C    VD+A  L  D+ S G  PDVV Y++++ G C+  R    ++L   +  
Sbjct: 233 NLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVR 292

Query: 343 EGCIPDTSSYNTLINSYSK---IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN 399
             C P+  ++NTLI+   +    E+V E L+   +M+  G  P                 
Sbjct: 293 MACPPNIVTFNTLISYLCRNGLFERVHEVLA---QMVEHGCTP----------------- 332

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
                D+ ++  ++DG+CK   L  A E+  ++P YG +PNVV Y  ++ GLC     E+
Sbjct: 333 -----DIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEE 387

Query: 460 AYDLLPDMEEKIRECL--------------------KAIELLHKMAKRYVKPDEITVSIL 499
             +LL +M +K  +C                     + IELL +M +    PD IT + +
Sbjct: 388 TEELLAEMFDK--DCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTV 445

Query: 500 EELLNKDENCHECMNLLPSFLS 521
                K+    E + LL S  +
Sbjct: 446 INGFCKEGLIDEAVMLLKSMTA 467



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 115/286 (40%), Gaps = 52/286 (18%)

Query: 234 YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDV 293
           YN+++  YC A   E A+   +A                V   P+  +Y  ++ +LC   
Sbjct: 130 YNAMVAGYCRAGQLESARRLAAA----------------VPVPPNAYTYFPVVRALCARG 173

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353
            +  A  +  +M  RG  P   +Y  +++  C  G    A ++   + + GC  D  + N
Sbjct: 174 RIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCN 233

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLV 413
            ++N+      V+EAL L  ++ S G  PD                      +  +N ++
Sbjct: 234 LVLNAICDQGSVDEALHLLRDLPSFGCEPD----------------------VVSYNAVL 271

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
            GLC + R     EL +++ R    PN+VT+  +I  LC  G  E+ +++L  M E    
Sbjct: 272 KGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVE--HG 329

Query: 474 CLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519
           C   I +   +     K   + V+            HE +N +PS+
Sbjct: 330 CTPDIRMYATIIDGICKEGHLEVA------------HEILNRMPSY 363


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/401 (28%), Positives = 199/401 (49%), Gaps = 30/401 (7%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142
           P P + +FN ++  L  +   V    L  R+  +G  PD V+ N L++ + K   + +  
Sbjct: 196 PVPNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVE 255

Query: 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202
             +  + +   + DVVT   LI      G+  +A   F +      R  V+ NV+ +++ 
Sbjct: 256 QLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMK----RQGVVANVVTFSTF 311

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
           +D  CK+G V +   LF  M+ RG+ P+ F Y SL+   C A   +D       A+ L +
Sbjct: 312 VDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDD-------AIVLLD 364

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
           E V+     G++  P+V++Y  +++ LCK+  V +A  +   M+  G+  + ++Y++LI 
Sbjct: 365 EMVHQ----GLV--PNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIH 418

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
           G+ +    + A  L   ++++G   D S Y TLI    K +KV+EA SL  +M   G+RP
Sbjct: 419 GHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRP 478

Query: 383 DN---SCIL----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
           +    + I+          EA  L   + ++ F+ ++  +  L+DGLCK+  +  A   F
Sbjct: 479 NTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHF 538

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            K+   G +PNV  YT +I G C  G + KA  L+ +M +K
Sbjct: 539 NKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDK 579



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 116/438 (26%), Positives = 188/438 (42%), Gaps = 39/438 (8%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E EL +A   F  M  M  +P + ++NSL+              L   +   G   D V+
Sbjct: 213 EGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVT 272

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N L+NCF K   +  A+   G + R+    +VVT    +   C +G   EA  LF +  
Sbjct: 273 YNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMR 332

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
                  ++PN   Y S++DG CK G ++   VL  +M  +G+ P+   Y  ++   C  
Sbjct: 333 V----RGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKE 388

Query: 245 VNWEDA--------KGNTSA-----ALELHEEFVNGNGELGVIC---------HPDVLSY 282
               +A        +G   A        +H  F+N N E  +             DV  Y
Sbjct: 389 GKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLY 448

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
            ++I  LCKD  VD+AK L   M   G+ P+ V+Y++++D     G+  +A  L   I  
Sbjct: 449 GTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILD 508

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSCIL----E 389
            G  P+  +Y  LI+   K   + EA+S + +M  +G+ P         D  C +    +
Sbjct: 509 SGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNK 568

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
           A  L   + +    LD  V+  L+DG  K   L+ A+ L  K+   G + ++  YT  I 
Sbjct: 569 AMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFIS 628

Query: 450 GLCIEGGIEKAYDLLPDM 467
           G C    +++A  +L +M
Sbjct: 629 GFCNMNMMQEARGVLSEM 646



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 110/401 (27%), Positives = 183/401 (45%), Gaps = 61/401 (15%)

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           + DA  AL R+ +    P+  T   ++  L          GL  +   FD  P  +PNV 
Sbjct: 150 LDDAVRALARVRQLRVPPNTRTCNHILLRLARN----RQGGLVRRL--FDLLP--VPNVF 201

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            +  +ID LCK+G + + R LF+ MK  G  PD   YNSLI  Y    + E+        
Sbjct: 202 TFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEV------- 254

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
               E+ V+   + G  C  DV++Y ++IN   K   ++KA   F +MK +G++ +VV +
Sbjct: 255 ----EQLVSEMRKSG--CAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTF 308

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           S+ +D +C  G + +A KLF  +   G +P+  +Y +L++   K  ++++A+ L  EM+ 
Sbjct: 309 STFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVH 368

Query: 378 MGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
            G+ P                      ++  +  +VDGLCK  ++  A  +   + R G 
Sbjct: 369 QGLVP----------------------NVVTYTVMVDGLCKEGKVAEADNVLSLMERGGV 406

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE------------------CLKAIE 479
           + N + YT +I G  +    E+A DLL  M+ K  E                    +A  
Sbjct: 407 KANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKS 466

Query: 480 LLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
           LLHKMA   ++P+ +  + + + L K     E + LL   L
Sbjct: 467 LLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKIL 507



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 110/446 (24%), Positives = 196/446 (43%), Gaps = 70/446 (15%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           SK G +E   A  +F  M        + +F++ + A   +      + L  ++   G++P
Sbjct: 281 SKFGRME--KAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMP 338

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG-- 178
           +  +   L++  CK   + DA V L  ++ +   P+VVT   ++ GLC +GK  EA    
Sbjct: 339 NEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVL 398

Query: 179 -------------LFTKFV-----------AFDCRPNVIPN------VICYASIIDGLCK 208
                        L+T  +           A D   N + N      V  Y ++I GLCK
Sbjct: 399 SLMERGGVKANELLYTTLIHGHFMNNNSERALDLL-NQMKNKGMELDVSLYGTLIWGLCK 457

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           D  V++ + L   M G G+ P+  +Y +++        ++  K + + AL LH+   +G 
Sbjct: 458 DQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDAL-----FKAGKESEAVAL-LHKILDSG- 510

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                   P+V++YC++I+ LCK   + +A   F  M+  G+ P+V  Y++LIDG+C +G
Sbjct: 511 ------FQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIG 564

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL 388
            ++ A  L   +  +G   D   Y +LI+ Y K   +++A +L  +MI  G+        
Sbjct: 565 SLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGL-------- 616

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
                         +LDL  + C + G C    ++ A  +  ++   G  P+   Y  +I
Sbjct: 617 --------------QLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLI 662

Query: 449 CGLCIEGGIEKAYDLLPDMEEKIREC 474
                 G +E+A  L  +ME  +  C
Sbjct: 663 RKYQKLGNMEEASSLQNEMESVLSSC 688


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 51/501 (10%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G +E  +AL   + MI       + ++N+++G +A        + L   +   G+ PD
Sbjct: 358 KEGNIE--EALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPD 415

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             + N+L++ + K   ++ A   L  +  +  +P   T   LI GLC      +A+ +  
Sbjct: 416 TWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLD 475

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           + +    R  V PNV  Y ++I    ++        L   M   G+ PD F YN LI   
Sbjct: 476 QMI----RNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGL 531

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C A   E+AK             +   GE G+   P+  +Y + IN   K   +  A+  
Sbjct: 532 CRAKKVEEAK-----------MLLVDMGEKGI--KPNAHTYGAFINLYSKSGEIQVAERY 578

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F DM S GI+P+ V+Y+ LI G+C +G   +A   F  +  +G IPD  +Y+ +I+S SK
Sbjct: 579 FKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSK 638

Query: 362 IEKVEEALSLYGEMISMGVRPD----NSCIL---------EAAELFRTLHNTKFELDLTV 408
             K +EA+ ++ + +  GV PD    NS I          +A++L+  + +     ++ V
Sbjct: 639 NGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVV 698

Query: 409 FNCLVD--GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
           +N L++  G CKS  L  A++LF ++   G  P+   Y ++I G   EG +EKA  L  +
Sbjct: 699 YNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHE 758

Query: 467 MEEKIRECLKAI-----------------ELLHKMAKRYVKPDEITVSILEELLNKDENC 509
            ++K    L A                  EL   M  + + P+ +T +IL +   K E  
Sbjct: 759 AQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMM 818

Query: 510 HECMNLLPSFLSRNQEESKLT 530
            E   L     +RN   + LT
Sbjct: 819 EEAEQLFLDMETRNIIPNTLT 839



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 133/492 (27%), Positives = 205/492 (41%), Gaps = 91/492 (18%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           +K+GE  +  A+  FN M+     P   ++N L+              L   +    L P
Sbjct: 392 AKAGE--MAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTP 449

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
              + ++L++  C    +  A   L +++R    P+V   G LI+    + ++  A  L 
Sbjct: 450 SPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELL 509

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
              +A      V+P++ CY  +I GLC+   V + ++L +DM  +GI P+A  Y + I +
Sbjct: 510 KIMIA----NGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINL 565

Query: 241 YCCAVNWEDAK----------------------------GNTSAALELHEEFVNGNGELG 272
           Y  +   + A+                            GNT  AL   +  +    E G
Sbjct: 566 YSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCML----EKG 621

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
           +I  PD+ +Y +II+SL K+    +A  +FL     G++PDV +Y+SLI G+C  G I+ 
Sbjct: 622 LI--PDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEK 679

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYS--KIEKVEEALSLYGEMISMGVRPDNS--CIL 388
           A +L+  +   G  P+   YNTLIN Y   K   + EA  L+ EMIS G+ PD    CIL
Sbjct: 680 ASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCIL 739

Query: 389 -----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF-----KKL 432
                      +A  LF           L+ FN L+D  CK  ++  A ELF     KKL
Sbjct: 740 IDGCGKEGNLEKALSLFHEAQQKSVG-SLSAFNSLIDSFCKHGKVIEARELFDDMVDKKL 798

Query: 433 P-----------RYGPE-------------------PNVVTYTVMICGLCIEGGIEKAYD 462
                        YG                     PN +TYT ++      G   K   
Sbjct: 799 TPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMIS 858

Query: 463 LLPDMEEKIREC 474
           L  DME +   C
Sbjct: 859 LFKDMEARGIAC 870



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 182/396 (45%), Gaps = 56/396 (14%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G++P+ V   IL+   C +    +A      +L K   PD+     +I  L   GK  EA
Sbjct: 586 GIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEA 645

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
            G+F KF+    +  V+P+V  Y S+I G CK+G + K   L+ +M   GI P+  VYN+
Sbjct: 646 MGVFLKFL----KTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNT 701

Query: 237 LIR------------------------------VYCCAVNWEDAKGNTSAALEL-HEEFV 265
           LI                               +YC  ++    +GN   AL L HE   
Sbjct: 702 LINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQ 761

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
              G L         ++ S+I+S CK   V +A+ELF DM  + + P++V Y+ LID Y 
Sbjct: 762 KSVGSLS--------AFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYG 813

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM---------I 376
               +++A +LF+ +E+   IP+T +Y +L+ SY++I    + +SL+ +M         I
Sbjct: 814 KAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAI 873

Query: 377 SMGVRPDNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
           + GV     C     LEA +L         +L+  VF+ L+  LCK  ++ +  EL  ++
Sbjct: 874 AYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEM 933

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
            +     +  T   ++ G    G  ++A  +L  M+
Sbjct: 934 GKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQ 969



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 179/390 (45%), Gaps = 41/390 (10%)

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
           +L R  R+    ++      I    + G   EAS +F   ++        P +IC  +++
Sbjct: 159 SLVRCYREFGGSNLTVFDIFIDKFRVLGFLNEASSVFIASIS----EGFFPTLICCNNLM 214

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
             L K   +     ++  M    I PD + Y ++I+ +C   +    K   S   E+ +E
Sbjct: 215 RDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLS---EMEKE 271

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
                      C P++ +Y + I  LC+   VD+A E+   M  +G+ PD   Y+ L+DG
Sbjct: 272 -----------CKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDG 320

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           +C   R  +A+ +F S+ S G  P+  +Y  LI+ + K   +EEAL +  EMI+ G++ +
Sbjct: 321 FCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLN 380

Query: 384 ----NSCI---------LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
               N+ I          +A  LF  +     E D   +N L+DG  KS  +  A EL  
Sbjct: 381 VVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLA 440

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKA-IELLHKMAKRYV 489
           ++      P+  TY+V+I GLC    ++KA ++L  M   IR  +K  + +   + K YV
Sbjct: 441 EMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQM---IRNGVKPNVFMYGTLIKAYV 497

Query: 490 KPD--EITVSILEELLNK----DENCHECM 513
           +    E+ + +L+ ++      D  C+ C+
Sbjct: 498 QESRYEMAIELLKIMIANGVLPDLFCYNCL 527



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 87/380 (22%), Positives = 148/380 (38%), Gaps = 58/380 (15%)

Query: 39  LHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALA 98
           L    +  +   + ++  LS+N K+ E     A+  F   +     P +  +NSL+    
Sbjct: 618 LEKGLIPDIRAYSAIIHSLSKNGKTKE-----AMGVFLKFLKTGVVPDVFLYNSLISGFC 672

Query: 99  GKKYYVNFICLSERLNTIGLLPDFVSLNILMN--CFCKMIGVSDAFVALGRILRKVFSPD 156
            +        L + +   G+ P+ V  N L+N   +CK   +++AF     ++ K  SPD
Sbjct: 673 KEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPD 732

Query: 157 -----VVTLGC-----------------------------LIRGLCMQGKFTEASGLFTK 182
                ++  GC                             LI   C  GK  EA  LF  
Sbjct: 733 GYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDD 792

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
            V       + PN++ Y  +ID   K   + +   LFLDM+ R I P+   Y SL+  Y 
Sbjct: 793 MV----DKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSY- 847

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
                 +  GN    + L ++        G+ C  D ++Y  + ++ CK+    +A +L 
Sbjct: 848 ------NQIGNRFKMISLFKDM----EARGIAC--DAIAYGVMASAYCKEGKSLEALKLL 895

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
                 GI  +  V+ +LI   C   +I    +L   +  E     + + NTL+  + K 
Sbjct: 896 NKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKS 955

Query: 363 EKVEEALSLYGEMISMGVRP 382
              +EA  + G M  +G  P
Sbjct: 956 GNEDEASKVLGVMQRLGWVP 975


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 116/424 (27%), Positives = 188/424 (44%), Gaps = 48/424 (11%)

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           +LNI+++ +CK +    A   +  + ++   PDVVT   LI      G    A  L    
Sbjct: 159 TLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSM 218

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
                   + P ++ Y S++ GLCK    +K + +F  M    + PD   +N LI  +C 
Sbjct: 219 ----ANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCR 274

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                   G    A++ ++E  +          PDV+S+  +I    +   +D A     
Sbjct: 275 V-------GEVKEAVKFYKEMQH------RYVTPDVVSFSCLIGLFSRRGEMDHAGAYLR 321

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
           +MK  G++PD V+Y+ +I G+C  G + +A ++   +   GC+PD  +YNTL+N   K  
Sbjct: 322 EMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQH 381

Query: 364 KVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFN 410
           ++ +A  L  EM   GV PD                   A +LF TL   +   D+  +N
Sbjct: 382 RLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYN 441

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            L+DG+C+   L  A EL+  +      PN +TY+++I   C +G +E A+  L +M +K
Sbjct: 442 SLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKK 501

Query: 471 -----IR-------------ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHEC 512
                IR                K  + L KM +  V PD IT + L     K+EN H  
Sbjct: 502 GNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGA 561

Query: 513 MNLL 516
            N+ 
Sbjct: 562 FNVF 565



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/454 (24%), Positives = 203/454 (44%), Gaps = 67/454 (14%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           ++G+V+   A+   + M +    P + ++NS+L  L   + +     +   ++   + PD
Sbjct: 204 RAGDVDA--AIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPD 261

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCL------------------ 163
             S NIL+  FC++  V +A      +  +  +PDVV+  CL                  
Sbjct: 262 VRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLR 321

Query: 164 -----------------IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGL 206
                            I G C  G  +EA  +  + V F C    +P+V+ Y ++++GL
Sbjct: 322 EMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGC----LPDVVTYNTLLNGL 377

Query: 207 CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266
           CK   +     L  +M+ RG+ PD   + +LI  YC        +GN   AL+L +  + 
Sbjct: 378 CKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYC-------RQGNFENALQLFDTLLR 430

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
                     PDV++Y S+I+ +C+   + KA EL+ DM +R I+P+ + YS LID +C 
Sbjct: 431 QR------LRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCE 484

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--- 383
            G+++DA      +  +G +P+  +YN++I  Y +   V++      +M    V PD   
Sbjct: 485 KGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLIT 544

Query: 384 -NSCI---------LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
            N+ I           A  +F  +       D   +N +++G  +   ++ A  +FK + 
Sbjct: 545 FNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMG 604

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
             G EP+  TY  +I G    G  ++A+ L  +M
Sbjct: 605 DSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEM 638



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 161/351 (45%), Gaps = 38/351 (10%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPS---FNSLLGALAGKKYYVNFICLSERLNTIG 117
           S+ GE++   A     Y+  M+    +P    +  ++G           + + + +   G
Sbjct: 308 SRRGEMDHAGA-----YLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFG 362

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
            LPD V+ N L+N  CK   + DA   L  +  +  +PD+ T   LI G C QG F  A 
Sbjct: 363 CLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENAL 422

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            LF   +    R  + P+V+ Y S+IDG+C+ G + K   L+ DM  R I P+   Y+ L
Sbjct: 423 QLFDTLL----RQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSIL 478

Query: 238 IRVYCCAVNWEDA---------KGN---------------TSAALELHEEFVNGNGELGV 273
           I  +C     EDA         KGN                S  ++  ++F+    +  V
Sbjct: 479 IDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNV 538

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
              PD++++ ++I+   K+  +  A  +F  M+   + PD V Y+ +I+G+   G + DA
Sbjct: 539 F--PDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDA 596

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
            ++F  +   G  PD  +Y +LIN +      ++A  L+ EMI  G  PD+
Sbjct: 597 GRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHRGFAPDD 647



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 137/306 (44%), Gaps = 43/306 (14%)

Query: 230 DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSL 289
           +A+  N ++  YC  + ++   G  +   E+ +  V           PDV+++  +I++ 
Sbjct: 156 NAYTLNIMVHSYCKTLEFD---GADTVISEMEKRCV----------FPDVVTHNVLIDAR 202

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
            +   VD A  L   M +RG+ P +V Y+S++ G C   R D A+++F +++     PD 
Sbjct: 203 FRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDV 262

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---SCIL----------EAAELFRT 396
            S+N LI  + ++ +V+EA+  Y EM    V PD    SC++           A    R 
Sbjct: 263 RSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLRE 322

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           +       D  ++  ++ G C++  +  A  +  ++  +G  P+VVTY  ++ GLC    
Sbjct: 323 MKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLC---- 378

Query: 457 IEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                        K    L A +LL++M +R V PD  T + L     +  N    + L 
Sbjct: 379 -------------KQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLF 425

Query: 517 PSFLSR 522
            + L +
Sbjct: 426 DTLLRQ 431


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 117/426 (27%), Positives = 201/426 (47%), Gaps = 35/426 (8%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           NS      LN ++ +FN M+     P    FN LL  + G   +  +       N   ++
Sbjct: 102 NSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNE-NKSKVV 160

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
            D  S  IL+   C+   +  +F  L  +    FSP+VV    LI G C +G+  +A  L
Sbjct: 161 LDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDL 220

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F +      +  ++ N   Y  +I+GL K+G   +   ++  M+  G++P+ + YN    
Sbjct: 221 FFEM----GKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYN---- 272

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
              C +N     G T  A ++ +E      E GV C  ++++Y ++I  LC+++ +++A 
Sbjct: 273 ---CVMNQLCKDGRTKDAFQVFDEM----RERGVSC--NIVTYNTLIGGLCREMKLNEAN 323

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           ++   MKS GI P+++ Y++LIDG+C +G++  A  L   ++S G  P   +YN L++ +
Sbjct: 324 KVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGF 383

Query: 360 SKIEKVEEALSLYGEMISMGVRP---------------DNSCILEAAELFRTLHNTKFEL 404
            +      A  +  EM   G++P               DN  + +A +L  ++       
Sbjct: 384 CRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDN--MEKAIQLRLSMEELGLVP 441

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           D+  ++ L+ G C   ++  A  LFK +     EPN V Y  MI G C EG   +A  LL
Sbjct: 442 DVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLL 501

Query: 465 PDMEEK 470
            +MEEK
Sbjct: 502 KEMEEK 507



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/399 (26%), Positives = 187/399 (46%), Gaps = 54/399 (13%)

Query: 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV 215
           DV + G LI+G C  G+  ++  L  +   F       PNV+ Y ++IDG CK G + K 
Sbjct: 162 DVYSFGILIKGCCEAGEIEKSFDLLIELTEF----GFSPNVVIYTTLIDGCCKKGEIEKA 217

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
           + LF +M   G+  +        R Y   +N     G      E++E+      E GV  
Sbjct: 218 KDLFFEMGKLGLVANE-------RTYTVLINGLFKNGVKKQGFEMYEKM----QEDGVF- 265

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
            P++ +Y  ++N LCKD     A ++F +M+ RG+  ++V Y++LI G C   ++++A K
Sbjct: 266 -PNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANK 324

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP------------- 382
           +   ++S+G  P+  +YNTLI+ +  + K+ +ALSL  ++ S G+ P             
Sbjct: 325 VVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFC 384

Query: 383 ---DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
              D S    AA++ + +     +     +  L+D   +S  +  A +L   +   G  P
Sbjct: 385 RKGDTSG---AAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVP 441

Query: 440 NVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE------------------CLKAIELL 481
           +V TY+V+I G CI+G + +A  L   M EK  E                    +A++LL
Sbjct: 442 DVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLL 501

Query: 482 HKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
            +M ++ + P+  +   + E+L K+    E   L+   +
Sbjct: 502 KEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMI 540



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 161/333 (48%), Gaps = 39/333 (11%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           + E++   G+ P+  + N +MN  CK     DAF     +  +  S ++VT   LI GLC
Sbjct: 255 MYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLC 314

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
            + K  EA+ +  +  +      + PN+I Y ++IDG C  G + K   L  D+K RG+ 
Sbjct: 315 REMKLNEANKVVDQMKS----DGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLS 370

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           P    YN L+  +C        KG+TS A ++ +E      E G+   P  ++Y  +I++
Sbjct: 371 PSLVTYNILVSGFC-------RKGDTSGAAKMVKEM----EERGI--KPSKVTYTILIDT 417

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
             +   ++KA +L L M+  G++PDV  YS LI G+C+ G++++A +LF S+  + C P+
Sbjct: 418 FARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPN 477

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTV 408
              YNT+I  Y K      AL L  EM    + P                      ++  
Sbjct: 478 EVIYNTMILGYCKEGSSYRALKLLKEMEEKELAP----------------------NVAS 515

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
           +  +++ LCK  + + A  L +K+   G +P+ 
Sbjct: 516 YRYMIEVLCKERKSKEAERLVEKMIDSGIDPST 548



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 110/254 (43%), Gaps = 17/254 (6%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E++LN+A    + M      P + ++N+L+    G       + L   L + GL P  V+
Sbjct: 316 EMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVT 375

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            NIL++ FC+    S A   +  +  +   P  VT   LI          +A  L     
Sbjct: 376 YNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSME 435

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
                  ++P+V  Y+ +I G C  G +N+   LF  M  +   P+  +YN++I  YC  
Sbjct: 436 EL----GLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYC-- 489

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                 +G++  AL+L +E      EL     P+V SY  +I  LCK+    +A+ L   
Sbjct: 490 -----KEGSSYRALKLLKEM--EEKELA----PNVASYRYMIEVLCKERKSKEAERLVEK 538

Query: 305 MKSRGIIPDVVVYS 318
           M   GI P   + S
Sbjct: 539 MIDSGIDPSTSILS 552



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 100/229 (43%), Gaps = 31/229 (13%)

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F +     ++ DV  +  LI G C  G I+ +  L + +   G  P+   Y TLI+   K
Sbjct: 151 FFNENKSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCK 210

Query: 362 IEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTV 408
             ++E+A  L+ EM  +G+  +             N    +  E++  +       +L  
Sbjct: 211 KGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYT 270

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +NC+++ LCK  R + A+++F ++   G   N+VTY  +I GLC E  + +A  ++  M+
Sbjct: 271 YNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMK 330

Query: 469 EK------------------IRECLKAIELLHKMAKRYVKPDEITVSIL 499
                               + +  KA+ L   +  R + P  +T +IL
Sbjct: 331 SDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNIL 379



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 12/139 (8%)

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC-------ILEAAEL 393
           ESE        Y  +INSY + + +  ++S + EM+  G  P ++C       ++ ++  
Sbjct: 86  ESETSKTKFRLYEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSF 145

Query: 394 -----FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
                F   + +K  LD+  F  L+ G C++  +  +++L  +L  +G  PNVV YT +I
Sbjct: 146 NQWWSFFNENKSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLI 205

Query: 449 CGLCIEGGIEKAYDLLPDM 467
            G C +G IEKA DL  +M
Sbjct: 206 DGCCKKGEIEKAKDLFFEM 224


>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
 gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
          Length = 696

 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 119/419 (28%), Positives = 192/419 (45%), Gaps = 47/419 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ P+ V+ N +++  CK+  +  A   L +++ +   P+  T   LI G    G++TEA
Sbjct: 282 GIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEA 341

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             +  +      R    PNV+ Y+ +ID LCK G   + R +F  M   G  P+A  Y S
Sbjct: 342 VRILKEM----SRDGQRPNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGS 397

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           L+  Y    N  D   N    L +      G     +    ++ +YC       K   +D
Sbjct: 398 LLHGYATEGNLVDM--NNVKDLMVQNGMRPGRHVFNI----EIYAYC-------KCGRLD 444

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A   F  M+ +G +PD+V Y+++IDG C +GR+DDA   F  +  +G  PD  ++NTLI
Sbjct: 445 EASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIITFNTLI 504

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           + ++   K E+A  L+ EM+  G+ P                      ++  FN ++D L
Sbjct: 505 HGFALHGKWEKAEELFYEMMDRGIPP----------------------NVNTFNSMIDKL 542

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLK 476
            K  ++  A +LF  +PR G +PNVV+Y  MI G  I G + +   LL DM   +   LK
Sbjct: 543 FKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDM---LLIGLK 599

Query: 477 AIE-----LLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
                   LL  M    +KPD +T   L +   +D    + + L    L +  +   +T
Sbjct: 600 PTAVTFNTLLDGMVSMGLKPDVVTCKTLIDSCCEDGRIEDILTLFREMLGKADKTDTIT 658



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/416 (24%), Positives = 173/416 (41%), Gaps = 81/416 (19%)

Query: 52  KLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALA----------GKK 101
           +L +++ E  +SG++   DAL  F+ ++       + + N LL  +A          G  
Sbjct: 64  ELEQFIGECYRSGDLGPEDALDLFDELLQRARPGSIYALNQLLTTVARAPVSSSVRDGPA 123

Query: 102 YYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLG 161
             V+      R     + PD  +  IL++C C    ++  F ALG+I++       VT  
Sbjct: 124 LAVSMFNRMARAGAKKVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRAQAVTFT 183

Query: 162 CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD 221
            L+R LC + + ++A                                      + ++   
Sbjct: 184 PLLRTLCAEKRTSDA--------------------------------------MNIVLRR 205

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
           M   G  PD F Y +L++  C     E+A            E ++   E G  C P+V+S
Sbjct: 206 MPELGCTPDVFSYTTLLKGLCAEKKCEEAA-----------ELIHMMAEDGDNCPPNVVS 254

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y ++I+   K+  V KA  LF  M   GI P+VV  +S+IDG C +  +D A  +   + 
Sbjct: 255 YTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMI 314

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK 401
            E  +P+ ++YN+LI+ Y    +  EA+ +  EM   G RP                   
Sbjct: 315 DEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRP------------------- 355

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
              ++  ++ L+D LCKS     A E+F  + + G +PN  TY  ++ G   EG +
Sbjct: 356 ---NVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNL 408



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 182/393 (46%), Gaps = 30/393 (7%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A      MI     P   ++NSL+        +   + + + ++  G  P+ V+ ++
Sbjct: 303 MDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSM 362

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++C CK    ++A      +++    P+  T G L+ G   +G   + + +    V   
Sbjct: 363 LIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNG 422

Query: 188 CRPNV-IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            RP   + N+  YA      CK G +++  + F  M+ +G  PD   Y ++I   C    
Sbjct: 423 MRPGRHVFNIEIYA-----YCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGR 477

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            +DA    S   ++ ++ ++          PD++++ ++I+        +KA+ELF +M 
Sbjct: 478 LDDA---MSRFCQMIDDGLS----------PDIITFNTLIHGFALHGKWEKAEELFYEMM 524

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            RGI P+V  ++S+ID     G++ +ARKLF  +   G  P+  SYNT+I+ Y    +V 
Sbjct: 525 DRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVG 584

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLT--VFNC--LVDGLCKSWRL 422
           E + L  +M+ +G++P        A  F TL +    + L   V  C  L+D  C+  R+
Sbjct: 585 EVMKLLDDMLLIGLKP-------TAVTFNTLLDGMVSMGLKPDVVTCKTLIDSCCEDGRI 637

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
                LF+++     + + +T  + + G+ ++ 
Sbjct: 638 EDILTLFREMLGKADKTDTITENIKLRGVTVKA 670



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 112/273 (41%), Gaps = 39/273 (14%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PD+ ++  +I+  C    ++        +   G+    V ++ L+   C   R  DA  +
Sbjct: 142 PDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRAQAVTFTPLLRTLCAEKRTSDAMNI 201

Query: 337 FVSIESE-GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395
            +    E GC PD  SY TL+      +K EEA     E+I M     ++C         
Sbjct: 202 VLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEA----AELIHMMAEDGDNC--------- 248

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
                    ++  +  ++ G  K   +  A+ LF K+  +G  PNVVT   +I GLC   
Sbjct: 249 -------PPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQ 301

Query: 456 GIEKAYDLLPDM-EEKIR-----------------ECLKAIELLHKMAKRYVKPDEITVS 497
            ++KA  +L  M +E I                  +  +A+ +L +M++   +P+ +T S
Sbjct: 302 AMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYS 361

Query: 498 ILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           +L + L K     E   +  S +   Q+ +  T
Sbjct: 362 MLIDCLCKSGLHAEAREIFNSMIQSGQKPNAST 394



 Score = 42.7 bits (99), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 5/143 (3%)

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392
           AR    S   +G     S +N +  + +K  KV   ++ +G +IS     D  C+     
Sbjct: 110 ARAPVSSSVRDGPALAVSMFNRMARAGAK--KVAPDIATFGILISCCC--DAGCLNLGFA 165

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL-FKKLPRYGPEPNVVTYTVMICGL 451
               +  T        F  L+  LC   R   A  +  +++P  G  P+V +YT ++ GL
Sbjct: 166 ALGQIIKTGLRAQAVTFTPLLRTLCAEKRTSDAMNIVLRRMPELGCTPDVFSYTTLLKGL 225

Query: 452 CIEGGIEKAYDLLPDMEEKIREC 474
           C E   E+A +L+  M E    C
Sbjct: 226 CAEKKCEEAAELIHMMAEDGDNC 248


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 122/448 (27%), Positives = 214/448 (47%), Gaps = 60/448 (13%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
            + G+VE  +AL   + M      P + ++N L+  L         + + + +   GL P
Sbjct: 389 GRKGKVE--EALRIHDEM-RQDAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFP 445

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           + +++NI+++  CK   + +A      +  KV SPD  T   LI GL  +G+  +A  L+
Sbjct: 446 NIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLY 505

Query: 181 TKFVAFDCRPNVI-------------------------------PNVICYASIIDGLCKD 209
            K +  D  PNV+                               P+++   S +D + K 
Sbjct: 506 EKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKA 565

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
           G V K R LF ++K +G+ PD   Y+ LI     A       G +    +L  E      
Sbjct: 566 GEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKA-------GFSRETYKLFYEM----K 614

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
           E G+  H DVL+Y ++I+  CK   VDKA +L  +MK++G+ P VV Y S++DG   + R
Sbjct: 615 EQGL--HLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDR 672

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---SC 386
           +D+A  LF   +S G   +   Y++LI+ + K+ +++EA  +  E++  G+ P++   +C
Sbjct: 673 LDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNC 732

Query: 387 IL----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
           +L          EA   F+ + N K   +   ++ +++GLC   +   A+  ++++ + G
Sbjct: 733 LLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQG 792

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            +PN +TYT MI GL   G + +A  L 
Sbjct: 793 LKPNNITYTTMIAGLAKAGNVMEARGLF 820



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/419 (27%), Positives = 196/419 (46%), Gaps = 33/419 (7%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
            K G+V++  A  FF+ M      P   ++ +L+G L   +     + L E L+    +P
Sbjct: 284 GKVGKVDM--AWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVP 341

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
              + N ++  +       +A+  L R  RK   P V+   C++  L  +GK  EA  + 
Sbjct: 342 CVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIH 401

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            +      R +  PN+  Y  +ID LCK G +     +   MK  G++P+    N +I  
Sbjct: 402 DEM-----RQDAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDR 456

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
            C A   ++A    S  L L  +          +C PD  ++CS+I+ L +   VD A  
Sbjct: 457 LCKAQKLDEA---CSIFLGLDHK----------VCSPDSRTFCSLIDGLGRRGRVDDAYS 503

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           L+  M     IP+VVVY+SLI  +   GR +D  K++  +   GC PD    N+ ++   
Sbjct: 504 LYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVF 563

Query: 361 KIEKVEEALSLYGEMISMGVRPD--NSCIL-----------EAAELFRTLHNTKFELDLT 407
           K  +VE+  +L+ E+ + G+ PD  +  IL           E  +LF  +      LD+ 
Sbjct: 564 KAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVL 623

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
            +N ++DG CKS ++  A++L +++   G +P VVTY  ++ GL     +++AY L  +
Sbjct: 624 AYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEE 682



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 114/440 (25%), Positives = 187/440 (42%), Gaps = 52/440 (11%)

Query: 72  LCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131
           L  F+ M  +     +  F +L+   A +      + L + + +     D V  N+ ++C
Sbjct: 223 LTLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDC 282

Query: 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
           F K+  V  A+     +  +   PD VT   LI  LC   +  EA  LF +    D   +
Sbjct: 283 FGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEE---LDLNRS 339

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
           V P V  Y ++I G    G  ++   L    K +G  P    YN       C +     K
Sbjct: 340 V-PCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYN-------CILTCLGRK 391

Query: 252 GNTSAALELHEE--------FVNGNGELGVICH--------------------PDVLSYC 283
           G    AL +H+E            N  + ++C                     P++++  
Sbjct: 392 GKVEEALRIHDEMRQDAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVN 451

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
            +I+ LCK   +D+A  +FL +  +   PD   + SLIDG    GR+DDA  L+  +   
Sbjct: 452 IMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDS 511

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NS---CILEAAE---- 392
             IP+   Y +LI ++ K  + E+   +Y EM+  G  PD    NS   C+ +A E    
Sbjct: 512 DQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKG 571

Query: 393 --LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
             LF  +       D+  ++ L+ GL K+   R  ++LF ++   G   +V+ Y  +I G
Sbjct: 572 RALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDG 631

Query: 451 LCIEGGIEKAYDLLPDMEEK 470
            C  G ++KAY LL +M+ K
Sbjct: 632 FCKSGKVDKAYQLLEEMKTK 651



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 106/442 (23%), Positives = 192/442 (43%), Gaps = 65/442 (14%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L++A   F  + H   +P   +F SL+  L  +    +   L E++     +P+ V   
Sbjct: 462 KLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYT 521

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+  F K     D       ++ +  SPD++ L   +  +   G+  +   LF +  A 
Sbjct: 522 SLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKA- 580

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                ++P+V  Y+ +I GL K GF  +   LF +MK +G++ D   YN++I  +C    
Sbjct: 581 ---QGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFC---- 633

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G    A +L EE             P V++Y S+++ L K   +D+A  LF + K
Sbjct: 634 ---KSGKVDKAYQLLEEMKTKG------LQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAK 684

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           S G+  +VV+YSSLIDG+  +GRID+A  +   +  +G  P++ ++N L+++  K E+++
Sbjct: 685 SIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEID 744

Query: 367 EA-----------------------------------LSLYGEMISMGVRPDN------- 384
           EA                                      + EM   G++P+N       
Sbjct: 745 EAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMI 804

Query: 385 ------SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
                   ++EA  LF     +    D   +N +++GL  + +   A+ +F++    G  
Sbjct: 805 AGLAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKGCR 864

Query: 439 PNVVTYTVMICGLCIEGGIEKA 460
            N  T  V++  L     +E+A
Sbjct: 865 VNSKTCVVLLDALHKADCLEQA 886



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 161/340 (47%), Gaps = 24/340 (7%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+GEVE   AL  F  +      P + S++ L+  L    +      L   +   GL  D
Sbjct: 564 KAGEVEKGRAL--FEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLD 621

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            ++ N +++ FCK   V  A+  L  +  K   P VVT G ++ GL    +  EA  LF 
Sbjct: 622 VLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFE 681

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           +  +      V  NV+ Y+S+IDG  K G +++  ++  ++  +G+ P+++ +N L+   
Sbjct: 682 EAKSI----GVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLL--- 734

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
                  DA      A E+ E  V       + C P+ ++Y  +IN LC     +KA   
Sbjct: 735 -------DA---LVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVF 784

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           + +M+ +G+ P+ + Y+++I G    G + +AR LF   ++ G +PD++ YN +I   S 
Sbjct: 785 WQEMQKQGLKPNNITYTTMIAGLAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSS 844

Query: 362 IEKVEEALSLYGEMISMGVRPDN-SCILEAAELFRTLHNT 400
             K  +A  ++ E    G R ++ +C++    L   LH  
Sbjct: 845 ANKAMDAYIVFEETRLKGCRVNSKTCVV----LLDALHKA 880



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 144/321 (44%), Gaps = 29/321 (9%)

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           L+       K  EA G+      F  RP        Y ++I  L      + +  LF  M
Sbjct: 174 LVASFVKSHKLKEAFGVIEMMRKFKFRPAFS----AYTTLIGALSAANRPDPMLTLFHQM 229

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
           +  G   +  ++ +L+RV+         +G   AAL L +E  + +         D++ Y
Sbjct: 230 QEIGYEANVHLFTTLVRVFA-------REGRIDAALSLLDEMKSNS------FTADLVLY 276

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
              I+   K   VD A + F +MK++G++PD V Y++LI   C   R+D+A +LF  ++ 
Sbjct: 277 NVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDL 336

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCIL-------EAAE 392
              +P   +YNT+I  Y    K +EA SL       G  P     +CIL       +  E
Sbjct: 337 NRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEE 396

Query: 393 LFRTLHNTKFEL--DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
             R     + +   +LT +N L+D LCK+  L +A ++   +   G  PN++T  +MI  
Sbjct: 397 ALRIHDEMRQDAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDR 456

Query: 451 LCIEGGIEKAYDLLPDMEEKI 471
           LC    +++A  +   ++ K+
Sbjct: 457 LCKAQKLDEACSIFLGLDHKV 477


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 114/418 (27%), Positives = 197/418 (47%), Gaps = 35/418 (8%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+ ++ +FN M+     P    FN+LL  + G   +  + C     + I ++ D  S  I
Sbjct: 110 LDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNE-SKIKVVLDVYSFGI 168

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++   C+   +  +F  L  +    FSP+VV    LI G C +G+  +A  LF +   F 
Sbjct: 169 VIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKF- 227

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               ++ N   Y  +I GL K+G   +   ++  M+  G++P+ + YN       C +N 
Sbjct: 228 ---GLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYN-------CVMNQ 277

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               G T  A ++ +E      E GV C  ++++Y ++I  LC+++  ++A ++   MKS
Sbjct: 278 LCKDGRTKDAFKVFDEM----RERGVSC--NIVTYNTLIGGLCREMKANEANKVMDQMKS 331

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
             I P+++ Y++LIDG+C +G++  A  L   ++S G  P   +YN L++ + +      
Sbjct: 332 YVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSG 391

Query: 368 ALSLYGEMISMGVRP---------------DNSCILEAAELFRTLHNTKFELDLTVFNCL 412
           A  +  EM   G++P               DN  +  A +L  ++       D+  ++ L
Sbjct: 392 AAKMVKEMEERGIKPSKVTYTILIDTFARSDN--METAIQLRSSMEELGLVPDVHTYSVL 449

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           + G C   ++  A  LFK +     EPN V Y  MI G C EG   +A  L  DMEEK
Sbjct: 450 IHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEK 507



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 146/308 (47%), Gaps = 44/308 (14%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           + E++   G+ P+  + N +MN  CK     DAF     +  +  S ++VT   LI GLC
Sbjct: 255 MYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLC 314

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
            + K  EA+ +  +  ++     + PN+I Y ++IDG C  G + K   L  D+K RG+ 
Sbjct: 315 REMKANEANKVMDQMKSYV----INPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLS 370

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE-------------------FVNGNG 269
           P    YN L+  +C        KG+TS A ++ +E                   F   + 
Sbjct: 371 PSLVTYNVLVSGFC-------RKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDN 423

Query: 270 ------------ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
                       ELG++  PDV +Y  +I+  C    +++A  LF  M  + + P+ V+Y
Sbjct: 424 METAIQLRSSMEELGLV--PDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIY 481

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           +++I GYC  G    A +LF  +E +   P+ +SY+ LI    K  K++EA  L  +MI 
Sbjct: 482 NTMILGYCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCKERKLKEAEDLVEKMID 541

Query: 378 MGVRPDNS 385
            G+ P ++
Sbjct: 542 SGIDPSDT 549



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 168/394 (42%), Gaps = 61/394 (15%)

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +++N + +   +  +      ++ K F P       L+        F   S  F ++  F
Sbjct: 99  VIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLL-------TFVVGSSSFNQWWCF 151

Query: 187 --DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
             + +  V+ +V  +  +I G C+ G + K   L ++++  G  P+  +Y +LI   CC 
Sbjct: 152 FNESKIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDG-CCK 210

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                 KG    A +L  E     G+ G++ +    +Y  +I+ L K+ +  +  E++  
Sbjct: 211 ------KGEIEKAKDLFFEM----GKFGLVANE--WTYTVLIHGLFKNGIKKQGFEMYEK 258

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M+  G+ P++  Y+ +++  C  GR  DA K+F  +   G   +  +YNTLI    +  K
Sbjct: 259 MQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMK 318

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
             EA  +  +M S  + P+                      L  +N L+DG C   +L  
Sbjct: 319 ANEANKVMDQMKSYVINPN----------------------LITYNTLIDGFCSVGKLGK 356

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKM 484
           A  L + L   G  P++VTY V++ G C +G    A  ++ +MEE               
Sbjct: 357 ALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEE--------------- 401

Query: 485 AKRYVKPDEITVSILEELLNKDENCHECMNLLPS 518
             R +KP ++T +IL +   + +N    + L  S
Sbjct: 402 --RGIKPSKVTYTILIDTFARSDNMETAIQLRSS 433



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 66/156 (42%), Gaps = 4/156 (2%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P   ++  L+   A        I L   +  +GL+PD  + ++L++ FC    +++A   
Sbjct: 406 PSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRL 465

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
              ++ K+  P+ V    +I G C +G    A  LF           + PNV  Y+ +I 
Sbjct: 466 FKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDME----EKELAPNVASYSYLIR 521

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            LCK+  + +   L   M   GI P   + N + R 
Sbjct: 522 VLCKERKLKEAEDLVEKMIDSGIDPSDTICNLISRA 557


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 181/391 (46%), Gaps = 44/391 (11%)

Query: 82  QPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDA 141
           QP  F  +F  LL  L           L  R+  +G +PD    N L++ + K      A
Sbjct: 7   QPDAF--TFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQA 64

Query: 142 FVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYAS 201
           F  L  +++    P VVT   ++ GLC  G+  +A  L  +     C PN+      Y  
Sbjct: 65  FKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYT----YNV 120

Query: 202 IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261
           I++GLC++  +++ + +  +M  RG +PD   YNS I+  C     ++A+   +      
Sbjct: 121 IVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLAR----- 175

Query: 262 EEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
                      +   PDV+SY ++IN LCK   +D A  +   M +RG  PDVV YSSLI
Sbjct: 176 -----------MPVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLI 224

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
           DG+C  G ++ A  L  S+   GC P+  +YN+L+ +  ++  + +A  +  EM   G  
Sbjct: 225 DGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFT 284

Query: 382 PDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
           P                      D+  +N  +DGLCK+ R++ A  +F ++   G  PN 
Sbjct: 285 P----------------------DVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNA 322

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDMEEKIR 472
            +Y++++  LC +  ++ A  L+    EK +
Sbjct: 323 SSYSMLVEELCKKKELDDAITLVEQAREKYQ 353



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 111/405 (27%), Positives = 194/405 (47%), Gaps = 43/405 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +   A  F   M+     P + ++ +++  L       + + L + +   G  P+  + N
Sbjct: 60  DFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYN 119

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +++   C+   + +A   L  +  + + PDVVT    I+GLC   +  EA     KF+A 
Sbjct: 120 VIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEAR----KFLA- 174

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             R  V P+V+ Y ++I+GLCK G ++    +   M  RG  PD   Y+SLI  +C    
Sbjct: 175 --RMPVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGE 232

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            E A G   + L+L              C P++++Y S++ +L +   + KA+++ ++M+
Sbjct: 233 VERAMGLLDSMLKLG-------------CRPNMVAYNSLLGALHRLGHIGKAEDMLVEME 279

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            RG  PDVV Y++ IDG C   R+  A+ +F  +   GC P+ SSY+ L+    K ++++
Sbjct: 280 RRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELD 339

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           +A++L               + +A E ++        +D+ ++  L+DGLCK  R   A 
Sbjct: 340 DAITL---------------VEQAREKYQI-------VDILLYTVLLDGLCKGGRFDEAC 377

Query: 427 ELFKK-LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            LF K L     EP+V  Y VM+   C    I+KA  +   M E+
Sbjct: 378 ALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLER 422



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 111/419 (26%), Positives = 184/419 (43%), Gaps = 34/419 (8%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K GEVE   A+   + M+ +   P M ++NSLLGAL    +      +   +   G  PD
Sbjct: 229 KGGEVE--RAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPD 286

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            VS N  ++  CK   V  A     R++ +  +P+  +   L+  LC + +  +A  L  
Sbjct: 287 VVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVE 346

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI-YPDAFVYNSLIRV 240
           +          I +++ Y  ++DGLCK G  ++   LF  +    I  PD F YN ++  
Sbjct: 347 QAR----EKYQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDS 402

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
           +C        +     AL++H++ +  N      C+  V+++  +++ LC D  +  A+ 
Sbjct: 403 HC-------KRRQIDKALQIHKQMLERN-----CCN--VVTWNILVHGLCVDDRLSDAET 448

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           + L M   G IPD V Y +L+D  C  G+   A +LF      GC+PD  +Y+ LI    
Sbjct: 449 MLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLV 508

Query: 361 KIEKVEEALSLYGEMISMGVRPDNSCILEAAE---------LFRTLHNTKFELDLTVFNC 411
                EEA  L+     + V   N+ IL  AE         LF  L  +  E +   F  
Sbjct: 509 HENMAEEAYLLF---TKLDVALWNAMILGYAENGSGDLGLKLFVELIESDVEPNARTFGK 565

Query: 412 LVDG-LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
            + G L K+  L  A  LF +  + G  P++     +I      G +E+A  +   M++
Sbjct: 566 EISGKLVKAESLGKARGLFDRAVKGGFFPDLFVANTLIDVFAKCGDLEEARRIFYSMKQ 624



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 130/312 (41%), Gaps = 63/312 (20%)

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY---------- 324
           C PD  ++  ++  LC+   ++KA++L   MK  G +PD  +Y++LI GY          
Sbjct: 6   CQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAF 65

Query: 325 -------------------------CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
                                    C  GR  DA KL   +  +GC P+  +YN ++   
Sbjct: 66  KFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGL 125

Query: 360 SKIEKVEEALSLYGEMISMGVRPD----NSCILEAAELFRTLHNTKF------ELDLTVF 409
            +  K++EA  +  EM   G  PD    NS I    +  R     KF        D+  +
Sbjct: 126 CEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSY 185

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
             +++GLCKS  L SA  +  ++   G  P+VVTY+ +I G C  G +E+A  LL  M +
Sbjct: 186 TTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLK 245

Query: 470 ------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHE 511
                             ++    KA ++L +M +R   PD ++ +   + L K E   +
Sbjct: 246 LGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKK 305

Query: 512 CMNLLPSFLSRN 523
              +    + R 
Sbjct: 306 AKAVFDRMVERG 317


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 114/404 (28%), Positives = 188/404 (46%), Gaps = 32/404 (7%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           SFN+LL  L       +   +  ++ + G+ P  ++ N ++N  CK   V +A +   +I
Sbjct: 164 SFNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKI 223

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
            +    PD  T   LI G C   K  +A  +F + V   C     PN + Y+++I+GLC 
Sbjct: 224 FQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCN----PNSVTYSTLINGLCN 279

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           +G + +   +  +M  +GI P  + Y   I   C     +DA              V   
Sbjct: 280 EGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAI-----------NLVRSM 328

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
           G+ G  C P V +Y +II+ L +   ++ A  ++  M   G++P+ V Y++LI+  C  G
Sbjct: 329 GKKG--CSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEG 386

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----N 384
           R   A K+F  +E  G + +  +YN +I     ++ +E+A+ ++ +M+  G  P     N
Sbjct: 387 RFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYN 446

Query: 385 SCILEAAELFRTLHNTKFELDLTVFNC---------LVDGLCKSWRLRSAWELFKKLPRY 435
           + I+E  +     + T+F   +   NC         L+ G CK  +L SA   F ++ + 
Sbjct: 447 TLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKC 506

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIE 479
           G  PN  TYT MI G C EG I+ A  L   MEE    C  +IE
Sbjct: 507 GISPNQWTYTAMIDGYCKEGKIDVALSLFERMEE--NGCSASIE 548



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 126/510 (24%), Positives = 221/510 (43%), Gaps = 61/510 (11%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L+ A   F+ M+     P   ++++L+  L  +      + + E +   G+ P   +  
Sbjct: 247 KLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYT 306

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           + ++  C +  V DA   +  + +K  SP V T   +I GL   GK   A G++ K +  
Sbjct: 307 VPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKML-- 364

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             +  ++PN + Y ++I+ LC +G       +F  M+G G   +A  YN +I+      +
Sbjct: 365 --KEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDD 422

Query: 247 WEDA--------KGNTSAALELHEEFVNGNGELGVI--------------CHPDVLSYCS 284
            E A        K   S  +  +   +  N + G +              C PD  +YC 
Sbjct: 423 IEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCE 482

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           +I+  CK   +D A   F +M   GI P+   Y+++IDGYC  G+ID A  LF  +E  G
Sbjct: 483 LISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENG 542

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAA 391
           C     +YN +I+  SK  +  EA     +M   G++P+             N+    A 
Sbjct: 543 CSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAF 602

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
           ++F  +       +   +  L+ GLC+  ++ +A    ++L   G EP + TY+ ++ GL
Sbjct: 603 KIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAA----ERLTENGCEPTIDTYSTLVSGL 658

Query: 452 CIEGGIEKAYDLLPDMEEK-------------IREC--LK---AIELLHKMAKRYVKPDE 493
           C EG   +A  L+ +M+EK             +  C  LK   A+E+ + MA +  +P  
Sbjct: 659 CREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPHL 718

Query: 494 ITVSILEELLNKDENCHECMNLLPSFLSRN 523
               +L   L       E +N+  S L + 
Sbjct: 719 FIYKVLICALCGVSRAEEALNIFQSLLKKQ 748



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 132/304 (43%), Gaps = 25/304 (8%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G++++  AL  F  M     +  + ++N+++  L+    +        ++   GL P+
Sbjct: 524 KEGKIDV--ALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPN 581

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            ++   L+N  CK    + AF     + +K   P+  T   LI GLC +GK   A     
Sbjct: 582 TITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAE---- 637

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           +     C P +      Y++++ GLC++G  N+   L  +MK +G+ P   +Y SL+  +
Sbjct: 638 RLTENGCEPTID----TYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAH 693

Query: 242 CCAVNWEDAKGNTSAALELHEEF-VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
           C ++           ALE+     V G         P +  Y  +I +LC     ++A  
Sbjct: 694 CKSLK-------VDCALEIFNLMAVKG-------FQPHLFIYKVLICALCGVSRAEEALN 739

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           +F  +  +    D++V++ L+DG    G  D   K    +ES  C P   +Y  L    S
Sbjct: 740 IFQSLLKKQWNSDLIVWTVLVDGLLQEGDSDLCMKFLYLMESRNCTPSLHTYIILARELS 799

Query: 361 KIEK 364
           K+ K
Sbjct: 800 KVGK 803



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 136/353 (38%), Gaps = 67/353 (18%)

Query: 64  GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV 123
           G  ++  A+  FN M+   P+P + ++N+L+     + Y  N       +      PD  
Sbjct: 419 GMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDER 478

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT-- 181
           +   L++ FCK   +  A      +L+   SP+  T   +I G C +GK   A  LF   
Sbjct: 479 TYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERM 538

Query: 182 -----------------------------KFVAFDCRPNVIPNVICYASIIDGLCKDGFV 212
                                        KF A      + PN I Y S+I+GLCK+   
Sbjct: 539 EENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTAT 598

Query: 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE---------- 262
           N    +F +M+ +   P+A  Y SLI   C        +G   AA  L E          
Sbjct: 599 NLAFKIFHEMEKKNCLPNAHTYTSLIYGLC-------QEGKVDAAERLTENGCEPTIDTY 651

Query: 263 -----------------EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
                            + V    E G+   P +  YCS++ + CK + VD A E+F  M
Sbjct: 652 STLVSGLCREGRSNEASQLVENMKEKGL--SPSMEIYCSLLVAHCKSLKVDCALEIFNLM 709

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
             +G  P + +Y  LI   C + R ++A  +F S+  +    D   +  L++ 
Sbjct: 710 AVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLIVWTVLVDG 762



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 110/237 (46%), Gaps = 40/237 (16%)

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
           S+ +++  L K  +V  A+ ++  + S G+ P ++ ++++I+  C  G++ +A  +F  I
Sbjct: 164 SFNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKI 223

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNT 400
                 PD  +Y +LI  + +  K+++A  ++  M+  G  P++                
Sbjct: 224 FQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNS---------------- 267

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
                   ++ L++GLC   R+  A ++ +++   G EP V TYTV I  LC  G ++ A
Sbjct: 268 ------VTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDA 321

Query: 461 YDLLPDMEEK------------IRECLK------AIELLHKMAKRYVKPDEITVSIL 499
            +L+  M +K            I    +      AI + HKM K  + P+ +T + L
Sbjct: 322 INLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNAL 378


>gi|147742776|gb|ABQ50556.1| hypothetical protein [Brassica rapa]
          Length = 348

 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 158/302 (52%), Gaps = 17/302 (5%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           +S   +++ +DA+  F  MI  +P P +  F+ L  A+A  K Y   + L +++   G+ 
Sbjct: 54  SSGIADIKKDDAVDLFQSMIRSRPLPSIIDFSRLFSAVAKTKQYELVLSLCKQMELQGIA 113

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
               +L+I++NCFC+   +  AF  LG+IL+  + PD VT   L+ GLC++G+ +EA  +
Sbjct: 114 HSIYTLSIVINCFCRRRKLGFAFSVLGKILKLGYEPDTVTFSTLVNGLCLEGRVSEAVVI 173

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             + V    RPN++       ++++GLC    V++   L   M   G  PD F Y  ++ 
Sbjct: 174 VDRMVEMKVRPNLVT----LNTLVNGLCLKDQVSEAEALVDRMVEHGCQPDQFTYGPILN 229

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C         GNT +AL+L  +  +          P V++Y  II+SLCK+   D+A 
Sbjct: 230 RIC-------KSGNTVSALDLLRKMEDKK------VKPQVVTYNMIIDSLCKNGNYDEAL 276

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            LF +M+  GI  DV+ Y+SLI G+C  GR DD  +L   + +    P+  +++ LI+ +
Sbjct: 277 SLFNEMEREGIKADVITYNSLIGGFCNAGRWDDGAQLLRDMITRNITPNVVTFSALIDCF 336

Query: 360 SK 361
            K
Sbjct: 337 VK 338



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 98/211 (46%), Gaps = 14/211 (6%)

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
           EL  I H  + +   +IN  C+   +  A  +   +   G  PD V +S+L++G CL GR
Sbjct: 108 ELQGIAHS-IYTLSIVINCFCRRRKLGFAFSVLGKILKLGYEPDTVTFSTLVNGLCLEGR 166

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN----- 384
           + +A  +   +      P+  + NTL+N     ++V EA +L   M+  G +PD      
Sbjct: 167 VSEAVVIVDRMVEMKVRPNLVTLNTLVNGLCLKDQVSEAEALVDRMVEHGCQPDQFTYGP 226

Query: 385 --------SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
                      + A +L R + + K +  +  +N ++D LCK+     A  LF ++ R G
Sbjct: 227 ILNRICKSGNTVSALDLLRKMEDKKVKPQVVTYNMIIDSLCKNGNYDEALSLFNEMEREG 286

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            + +V+TY  +I G C  G  +    LL DM
Sbjct: 287 IKADVITYNSLIGGFCNAGRWDDGAQLLRDM 317



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 122/299 (40%), Gaps = 30/299 (10%)

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
           K  +A  LF   +    R   +P++I ++ +   + K      V  L   M+ +GI    
Sbjct: 61  KKDDAVDLFQSMI----RSRPLPSIIDFSRLFSAVAKTKQYELVLSLCKQMELQGIAHSI 116

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
           +  + +I  +C       A       L+L  E             PD +++ +++N LC 
Sbjct: 117 YTLSIVINCFCRRRKLGFAFSVLGKILKLGYE-------------PDTVTFSTLVNGLCL 163

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
           +  V +A  +   M    + P++V  ++L++G CL  ++ +A  L   +   GC PD  +
Sbjct: 164 EGRVSEAVVIVDRMVEMKVRPNLVTLNTLVNGLCLKDQVSEAEALVDRMVEHGCQPDQFT 223

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLH 398
           Y  ++N   K      AL L  +M    V+P              N    EA  LF  + 
Sbjct: 224 YGPILNRICKSGNTVSALDLLRKMEDKKVKPQVVTYNMIIDSLCKNGNYDEALSLFNEME 283

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
               + D+  +N L+ G C + R     +L + +      PNVVT++ +I     EG +
Sbjct: 284 REGIKADVITYNSLIGGFCNAGRWDDGAQLLRDMITRNITPNVVTFSALIDCFVKEGKL 342



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 110/257 (42%), Gaps = 37/257 (14%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P ++ +  + +++ K    +    L   M+ +GI   +   S +I+ +C   ++  A  +
Sbjct: 79  PSIIDFSRLFSAVAKTKQYELVLSLCKQMELQGIAHSIYTLSIVINCFCRRRKLGFAFSV 138

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------- 383
              I   G  PDT +++TL+N      +V EA+ +   M+ M VRP+             
Sbjct: 139 LGKILKLGYEPDTVTFSTLVNGLCLEGRVSEAVVIVDRMVEMKVRPNLVTLNTLVNGLCL 198

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
              + EA  L   +     + D   +  +++ +CKS    SA +L +K+     +P VVT
Sbjct: 199 KDQVSEAEALVDRMVEHGCQPDQFTYGPILNRICKSGNTVSALDLLRKMEDKKVKPQVVT 258

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKA---------------------IELLH 482
           Y ++I  LC  G  ++A  L  +ME   RE +KA                      +LL 
Sbjct: 259 YNMIIDSLCKNGNYDEALSLFNEME---REGIKADVITYNSLIGGFCNAGRWDDGAQLLR 315

Query: 483 KMAKRYVKPDEITVSIL 499
            M  R + P+ +T S L
Sbjct: 316 DMITRNITPNVVTFSAL 332



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 108/255 (42%), Gaps = 40/255 (15%)

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           LSY   ++S   D+  D A +LF  M     +P ++ +S L        + +    L   
Sbjct: 47  LSYRERLSSGIADIKKDDAVDLFQSMIRSRPLPSIIDFSRLFSAVAKTKQYELVLSLCKQ 106

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN 399
           +E +G      + + +IN + +  K+  A S+ G+++ +G  PD                
Sbjct: 107 MELQGIAHSIYTLSIVINCFCRRRKLGFAFSVLGKILKLGYEPDT--------------- 151

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
                    F+ LV+GLC   R+  A  +  ++      PN+VT   ++ GLC++  + +
Sbjct: 152 -------VTFSTLVNGLCLEGRVSEAVVIVDRMVEMKVRPNLVTLNTLVNGLCLKDQVSE 204

Query: 460 AYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEE 501
           A  L+  M E                  K    + A++LL KM  + VKP  +T +++ +
Sbjct: 205 AEALVDRMVEHGCQPDQFTYGPILNRICKSGNTVSALDLLRKMEDKKVKPQVVTYNMIID 264

Query: 502 LLNKDENCHECMNLL 516
            L K+ N  E ++L 
Sbjct: 265 SLCKNGNYDEALSLF 279


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 112/417 (26%), Positives = 197/417 (47%), Gaps = 37/417 (8%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            L  AL  +  M    P  F+ ++  L+  L+      + + + + + +   +PD  +L 
Sbjct: 130 RLRHALGVYRQMNDAHPPDFL-TYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLT 188

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +++   C    V DA   +  +L +  + + +T   L+ GLC   +  EA  L    V  
Sbjct: 189 VVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVT- 247

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             R    P+++ Y+++IDGLCK G +     +F +M      P A  YNSLI  YC A  
Sbjct: 248 --RRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS---CAPTAITYNSLIGGYCRA-- 300

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G+   A+ L  + V+ N      C PDV++Y +++++ CK   +D A ELF  M 
Sbjct: 301 -----GDMDEAIRLLGKMVDDN------CAPDVITYTTLMSAFCKMGRLDDAYELFQQMV 349

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           +  + PDVV ++SL+DG C  GR++DA +L   I   GC P   +YN +++ Y K  +V 
Sbjct: 350 ANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVR 409

Query: 367 EALSLYGEMISMGVRPD----NSCILEAAELFRTLHNTKFELD------------LTVFN 410
           +A  L  +  S G  P+    N  +       RT    ++ LD            + ++ 
Sbjct: 410 KAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQY-LDQLNSEGGPCPTSVAMYA 468

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            ++D LC+  R   A + ++++ + G  P   T+  ++  LC     ++A++LL +M
Sbjct: 469 IILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEM 525



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 107/404 (26%), Positives = 184/404 (45%), Gaps = 38/404 (9%)

Query: 81  MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSD 140
           + P P     N++L  L   +     + L +++  +G +      N L++  CK   + +
Sbjct: 42  LSPDPV--ELNTILAELCDARDTTTAMALFDKMAELGAVNHTTYYN-LIHPLCKARLLDE 98

Query: 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200
           A   L  +  +  +P  +    +I GLC  G+   A G++ +    D  P   P+ + Y 
Sbjct: 99  AMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQM--NDAHP---PDFLTYT 153

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL 260
            ++ GL K G +     +  +M      PD      +++  C     +DA+       EL
Sbjct: 154 KLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDAR-------EL 206

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL-DMKSRGIIPDVVVYSS 319
            EE ++           + ++Y ++++ LCK   +D+A  L L ++  RG  PD+V YS+
Sbjct: 207 VEEMLHRG------MAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYST 260

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           +IDG C  GR+ DA  +F   E   C P   +YN+LI  Y +   ++EA+ L G+M+   
Sbjct: 261 VIDGLCKAGRLRDAVDIF---EEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDN 317

Query: 380 VRPD---------NSCIL----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
             PD           C +    +A ELF+ +   K   D+  F  LVDGLC   R+  A 
Sbjct: 318 CAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDAL 377

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           EL +++ R G  P + TY  ++ G C    + KA +L+ D   +
Sbjct: 378 ELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSR 421



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 165/362 (45%), Gaps = 43/362 (11%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PDF++   L++   K   + DA   L  ++     PD  TL  +++ LC+  +  +A  L
Sbjct: 147 PDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDAREL 206

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCK-DGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
             + +       +  N I Y++++DGLCK +     V +L  ++  RG  PD   Y+++I
Sbjct: 207 VEEML----HRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVI 262

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
              C A    DA       +++ EE           C P  ++Y S+I   C+   +D+A
Sbjct: 263 DGLCKAGRLRDA-------VDIFEEMS---------CAPTAITYNSLIGGYCRAGDMDEA 306

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
             L   M      PDV+ Y++L+  +C MGR+DDA +LF  + +    PD  ++ +L++ 
Sbjct: 307 IRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDG 366

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
                ++E+AL L  E+   G  P                       +  +NC+VDG CK
Sbjct: 367 LCGEGRMEDALELLEEITRRGCPPT----------------------IYTYNCVVDGYCK 404

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAI 478
           S ++R A EL       G  PN VTY +++ G C  G  ++A   L  +  +   C  ++
Sbjct: 405 SNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSV 464

Query: 479 EL 480
            +
Sbjct: 465 AM 466



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 162/331 (48%), Gaps = 45/331 (13%)

Query: 199 YASIIDGLCKDGFVNKVRVLFLD-MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
           +A ++ GL     +  +  L LD ++ RG+ PD    N+++   C      DA+ +T+ A
Sbjct: 13  FAVVLRGLHASAKLRHLGPLLLDEIRDRGLSPDPVELNTILAELC------DAR-DTTTA 65

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
           + L ++      ELG + H    +Y ++I+ LCK  L+D+A  L LDMKSRG+ P  +++
Sbjct: 66  MALFDKM----AELGAVNHT---TYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLH 118

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           + +I G C  GR+  A  ++  + ++   PD  +Y  L++  SK  ++ +A+ +  EM+S
Sbjct: 119 NVVIGGLCRAGRLRHALGVYRQM-NDAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVS 177

Query: 378 MGVRPDNSCIL-------------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
               PDN+ +              +A EL   + +     +   ++ LVDGLCK  RL  
Sbjct: 178 ARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDE 237

Query: 425 AWE-LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME--------------- 468
           A   L  ++ R G  P++VTY+ +I GLC  G +  A D+  +M                
Sbjct: 238 AVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAPTAITYNSLIGGY 297

Query: 469 EKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
            +  +  +AI LL KM      PD IT + L
Sbjct: 298 CRAGDMDEAIRLLGKMVDDNCAPDVITYTTL 328



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 138/309 (44%), Gaps = 18/309 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            L DA+  F     M   P   ++NSL+G           I L  ++      PD ++  
Sbjct: 270 RLRDAVDIFE---EMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYT 326

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            LM+ FCKM  + DA+    +++    SPDVVT   L+ GLC +G+  +A  L  +    
Sbjct: 327 TLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRR 386

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C P +      Y  ++DG CK   V K   L  D + RG  P+   YN L+   CC   
Sbjct: 387 GCPPTIYT----YNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILV-AGCCRA- 440

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G T  AL+  ++    N E G  C   V  Y  I+++LC+D   D A + + +M 
Sbjct: 441 -----GRTDQALQYLDQL---NSE-GGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMI 491

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            RG +P    +++++   C   +   A +L   +   G  P   + + ++++Y +   ++
Sbjct: 492 QRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQ 551

Query: 367 EALSLYGEM 375
           +A  L  E+
Sbjct: 552 KADELASEL 560



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 105/242 (43%), Gaps = 43/242 (17%)

Query: 301 LFLD-MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           L LD ++ RG+ PD V  ++++   C       A  LF  +   G +  T+ YN LI+  
Sbjct: 32  LLLDEIRDRGLSPDPVELNTILAELCDARDTTTAMALFDKMAELGAVNHTTYYN-LIHPL 90

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            K   ++EA+ L  +M S G+ P              LHN            ++ GLC++
Sbjct: 91  CKARLLDEAMGLLLDMKSRGMNPGT-----------LLHNV-----------VIGGLCRA 128

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE------ 473
            RLR A  +++++    P P+ +TYT ++ GL   G +  A  +L +M            
Sbjct: 129 GRLRHALGVYRQMNDAHP-PDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTL 187

Query: 474 -------CL-----KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
                  CL      A EL+ +M  R +  + IT S L + L K E   E + LL   ++
Sbjct: 188 TVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVT 247

Query: 522 RN 523
           R 
Sbjct: 248 RR 249


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 109/404 (26%), Positives = 182/404 (45%), Gaps = 56/404 (13%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD ++  IL+   C   GV  A   L  +  +   PDVVT   L+ G+C +G+  EA   
Sbjct: 14  PDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKF 73

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
                ++  +PNVI + I    I+  +C  G       L  +M  +G  P    +N LI 
Sbjct: 74  LNSMPSYGSQPNVITHNI----ILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILIN 129

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C        KG    A+++ E+           C P+ LSY  +++  CK+  +D+A 
Sbjct: 130 FLC-------RKGLLGRAIDILEKMPTHG------CTPNSLSYNPLLHGFCKEKKMDRAI 176

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           +    M SRG  PD+V Y++++   C  G++D A +L   + S+GC P   +YNT+I+  
Sbjct: 177 QYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGL 236

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
           SK+ K ++A+ L  EM   G++P                      D+  ++ L+ GL + 
Sbjct: 237 SKVGKTDQAVELLHEMRGKGLKP----------------------DVITYSSLIAGLSRE 274

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIE 479
            ++  A + F  +  +G +PN  TY  ++ GLC                 K ++  +AI+
Sbjct: 275 GKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLC-----------------KAQQTDRAID 317

Query: 480 LLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
            L  M  +  KP E++ +IL E +  +    E + LL    SR 
Sbjct: 318 FLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNELCSRG 361



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 128/273 (46%), Gaps = 31/273 (11%)

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
           C+PDV++Y  +I + C +  V +A +L  +M SRG  PDVV Y+ L++G C  GR+D+A 
Sbjct: 12  CYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAI 71

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----------- 383
           K   S+ S G  P+  ++N ++ S     +  +A  L  EM+  G  P            
Sbjct: 72  KFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFL 131

Query: 384 --NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
                +  A ++   +       +   +N L+ G CK  ++  A +  + +   G  P++
Sbjct: 132 CRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDI 191

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDME------------------EKIRECLKAIELLHK 483
           VTY  M+  LC +G ++ A +LL  +                    K+ +  +A+ELLH+
Sbjct: 192 VTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHE 251

Query: 484 MAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           M  + +KPD IT S L   L+++    E +   
Sbjct: 252 MRGKGLKPDVITYSSLIAGLSREGKVEEAIKFF 284



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 148/326 (45%), Gaps = 17/326 (5%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N    E  L++A+ F N M      P + + N +L ++     +++   L   +   G  
Sbjct: 59  NGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCS 118

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P  V+ NIL+N  C+   +  A   L ++     +P+ ++   L+ G C + K   A   
Sbjct: 119 PSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQY 178

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
               V+  C P+++     Y +++  LCKDG V+    L   +  +G  P    YN++I 
Sbjct: 179 LEIMVSRGCYPDIVT----YNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVI- 233

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
                 +     G T  A+EL  E + G G       PDV++Y S+I  L ++  V++A 
Sbjct: 234 ------DGLSKVGKTDQAVELLHE-MRGKG-----LKPDVITYSSLIAGLSREGKVEEAI 281

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           + F D++  G+ P+   Y+S++ G C   + D A      + S+GC P   SY  LI   
Sbjct: 282 KFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGI 341

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNS 385
           +     +EAL L  E+ S GV   +S
Sbjct: 342 ANEGLAKEALELLNELCSRGVVKKSS 367



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 134/287 (46%), Gaps = 17/287 (5%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DA      M+    +P + +FN L+  L  K      I + E++ T G  P+ +S N L+
Sbjct: 104 DAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLL 163

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           + FCK   +  A   L  ++ +   PD+VT   ++  LC  GK   A  L  +  +  C 
Sbjct: 164 HGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCS 223

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
           P +I     Y ++IDGL K G  ++   L  +M+G+G+ PD   Y+SLI      ++ E 
Sbjct: 224 PVLIT----YNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLI----AGLSRE- 274

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
             G    A++   + V G G       P+  +Y SI+  LCK    D+A +    M S+G
Sbjct: 275 --GKVEEAIKFFHD-VEGFG-----VKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKG 326

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
             P  V Y+ LI+G    G   +A +L   + S G +  +S+   ++
Sbjct: 327 CKPTEVSYTILIEGIANEGLAKEALELLNELCSRGVVKKSSAEQVVV 373


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 107/355 (30%), Positives = 174/355 (49%), Gaps = 57/355 (16%)

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           +   LC  G+  EA  L  +     C    IP+VI Y+++I+G C+ G + +V  L  +M
Sbjct: 259 ITHSLCQLGRVVEAHQLLLQMELRGC----IPDVISYSTVINGYCQVGELQRVLKLIEEM 314

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
           + +G+ P+ + YN +I + C         G  + A  +  E ++     G+   PD + Y
Sbjct: 315 QIKGLKPNPYTYNGVILLLC-------KTGKVAEAERVLREMISE----GIA--PDGVIY 361

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
            ++I+  CK   V  A  LF +M+ R I PD + Y+++I G C  GR+ +A KLF  +  
Sbjct: 362 TTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVC 421

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF 402
           +   PD  +Y  LI+ Y K  K++EA SL+ +M+ MG+ P                    
Sbjct: 422 KRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTP-------------------- 461

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
             ++  +  L DGLCK   + +A EL  ++ R G E N+ TY  ++ GLC  G I++A  
Sbjct: 462 --NIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVK 519

Query: 463 LLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           L+ DME                   K RE ++A ELL +M  R ++P  +T ++L
Sbjct: 520 LMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVL 574



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 110/404 (27%), Positives = 184/404 (45%), Gaps = 62/404 (15%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ PD V    L++ FCK+  VS A+     + ++  SPD +T   +I GLC  G+  EA
Sbjct: 353 GIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEA 412

Query: 177 SGLFTKFVAFDCRPNVI-------------------------------PNVICYASIIDG 205
             LF + V     P+ +                               PN++ Y ++ DG
Sbjct: 413 DKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADG 472

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF- 264
           LCK G V+    L  +M  +G+  + + YNSL+   C A       GN   A++L ++  
Sbjct: 473 LCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKA-------GNIDQAVKLMKDME 525

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           V G        HPD ++Y +++++ CK   + +A EL   M  R + P VV ++ L++G+
Sbjct: 526 VAG-------FHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGF 578

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           C+ G ++D  KL   +  +G +P+ ++YN+LI  Y     +     +Y  M + GV PD 
Sbjct: 579 CMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDG 638

Query: 385 SC-------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
           +              + EA  L R +    F L ++ +N L+ G  K  +   A ELF++
Sbjct: 639 NTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQ 698

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL 475
           + R G   +   Y +       EG +E   +L    +E I +CL
Sbjct: 699 MRREGLVADREIYNIFADINYDEGKMELTLELC---DEAIEKCL 739



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 179/372 (48%), Gaps = 30/372 (8%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L E +   GL P+  + N ++   CK   V++A   L  ++ +  +PD V    LI G C
Sbjct: 310 LIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFC 369

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
             G  + A  LF +      +  + P+ I Y ++I GLC+ G V +   LF +M  + + 
Sbjct: 370 KLGNVSSAYRLFDEMQ----KRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLE 425

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           PD   Y +LI  YC        +G    A  LH + +    ++G+   P++++Y ++ + 
Sbjct: 426 PDEVTYTALIDGYC-------KEGKMKEAFSLHNQML----QMGLT--PNIVTYTALADG 472

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           LCK   VD A EL  +M  +G+  ++  Y+SL++G C  G ID A KL   +E  G  PD
Sbjct: 473 LCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPD 532

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------NSCILEAAE-LFR 395
             +Y TL+++Y K  ++  A  L  +M+   ++P              S +LE  E L +
Sbjct: 533 AVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLK 592

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            +       + T +N L+   C    +R+  E+++ +   G  P+  TY ++I G C   
Sbjct: 593 WMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKAR 652

Query: 456 GIEKAYDLLPDM 467
            +++A+ L  DM
Sbjct: 653 NMKEAWFLHRDM 664



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 185/415 (44%), Gaps = 48/415 (11%)

Query: 116 IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
           +G+  +  S NI+ +  C++  V +A   L ++  +   PDV++   +I G C  G+   
Sbjct: 247 VGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQR 306

Query: 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
              L  +         + PN   Y  +I  LCK G V +   +  +M   GI PD  +Y 
Sbjct: 307 VLKLIEEMQI----KGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYT 362

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           +LI  +C         GN S+A  L +E             PD ++Y ++I  LC+   V
Sbjct: 363 TLIDGFC-------KLGNVSSAYRLFDEMQKRK------ISPDFITYTAVICGLCQTGRV 409

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
            +A +LF +M  + + PD V Y++LIDGYC  G++ +A  L   +   G  P+  +Y  L
Sbjct: 410 MEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTAL 469

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPD----NSC---------ILEAAELFRTLHNTKF 402
            +   K  +V+ A  L  EM   G+  +    NS          I +A +L + +    F
Sbjct: 470 ADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGF 529

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
             D   +  L+D  CKS  +  A EL +++     +P VVT+ V++ G C+ G +E    
Sbjct: 530 HPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEK 589

Query: 463 LLPDMEEK-----------------IRECLKA-IELLHKMAKRYVKPDEITVSIL 499
           LL  M EK                 IR  ++A  E+   M  + V PD  T +IL
Sbjct: 590 LLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNIL 644



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 142/303 (46%), Gaps = 50/303 (16%)

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNW----EDAKGNTSAALELHEEFVNGNGELGVICHPD 278
           + R ++     Y  LI V  C +      ED  G    AL++  EF     E+GV    +
Sbjct: 200 EARKLFDKMLNYGLLISVDSCNLFISHLSEDLDG-IKIALKVFVEF----PEVGVCW--N 252

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
             SY  I +SLC+   V +A +L L M+ RG IPDV+ YS++I+GYC +G +    KL  
Sbjct: 253 TASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIE 312

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398
            ++ +G  P+  +YN +I    K  KV EA  +  EMIS G+ PD               
Sbjct: 313 EMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDG-------------- 358

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
                    ++  L+DG CK   + SA+ LF ++ +    P+ +TYT +ICGLC  G + 
Sbjct: 359 --------VIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRV- 409

Query: 459 KAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPS 518
                           ++A +L H+M  + ++PDE+T + L +   K+    E  +L   
Sbjct: 410 ----------------MEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQ 453

Query: 519 FLS 521
            L 
Sbjct: 454 MLQ 456



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 149/350 (42%), Gaps = 23/350 (6%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           ++G V   D L  F+ M+  +  P   ++ +L+     +        L  ++  +GL P+
Sbjct: 405 QTGRVMEADKL--FHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPN 462

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+   L +  CK   V  A   L  + RK    ++ T   L+ GLC  G   +A  L  
Sbjct: 463 IVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMK 522

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
                       P+ + Y +++D  CK   + +   L   M  R + P    +N L+  +
Sbjct: 523 DMEV----AGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGF 578

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C            S  LE  E+ +    E G++  P+  +Y S+I   C    +    E+
Sbjct: 579 C-----------MSGMLEDGEKLLKWMLEKGIM--PNATTYNSLIKQYCIRNNMRATTEI 625

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           +  M ++G++PD   Y+ LI G+C    + +A  L   +  +G     SSYN LI  + K
Sbjct: 626 YRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYK 685

Query: 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNC 411
            +K  EA  L+ +M   G+  D     E   +F  ++  + +++LT+  C
Sbjct: 686 RKKFLEARELFEQMRREGLVADR----EIYNIFADINYDEGKMELTLELC 731


>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
 gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
          Length = 715

 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 129/501 (25%), Positives = 216/501 (43%), Gaps = 110/501 (21%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALA----------------GKKYYVNFIC 108
           E E++ A   F+ M+     P + ++NS++  L                  K      + 
Sbjct: 152 EGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDKGQLEEAVR 211

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L ++++  GL PD V+ ++L++ +CK+   ++A      ++R+  +PD  T   L+ G  
Sbjct: 212 LLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGYA 271

Query: 169 MQGKFTEASGLFTKFVAFDCRP------NVI--------------------------PNV 196
            +G   +   L    +  D  P      N++                          PNV
Sbjct: 272 TKGALVDMHDLLALMIQ-DGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNV 330

Query: 197 ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSA 256
           + Y ++ID LCK G V      F  M   G+ PD   + SLI   C    W+  +     
Sbjct: 331 VTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVE----- 385

Query: 257 ALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV 316
             +L  E +N         HP+ +   +I++SLCK+  V +A + F  +   G+ PDVV 
Sbjct: 386 --KLSFEMINRG------IHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVS 437

Query: 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
           Y+ LIDGYCL G++D++ KL   + S G  PD  +Y+ L+N Y K  +V++AL+LY EM 
Sbjct: 438 YTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMF 497

Query: 377 SMGVRP------------------------------------------------DNSCIL 388
           S  V+P                                                +NS + 
Sbjct: 498 SKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDSGIQLGINTYNIVLGGLCENSFVD 557

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
           EA  +F+ L + +F+L++  FN ++ GL K  R+  A  LF  +   G  P+ + Y +MI
Sbjct: 558 EALRMFQGLRSKEFQLEVRTFNIMIVGLLKVGRIGDAKSLFSAILPSGLVPDAIIYGLMI 617

Query: 449 CGLCIEGGIEKAYDLLPDMEE 469
                EG +E++ +L   ME+
Sbjct: 618 QSHIEEGLLEESDELFLSMEK 638



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 133/538 (24%), Positives = 233/538 (43%), Gaps = 103/538 (19%)

Query: 52  KLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALA----------GKK 101
           +L + + E  +SG + L DAL  F+ ++    +  + +FN +L  +A          G  
Sbjct: 14  QLERIIVEQHRSGSLGLEDALNLFDELLPRARSASVHAFNRVLTVVAHGDSSSSQRHGAA 73

Query: 102 YYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFS------- 154
             V+      ++    L  D  +  IL+ CFC +  +  A     R  R           
Sbjct: 74  LAVSLFNTMAQVGVNKLATDACTFGILIRCFCNVGLLDFALEEESRGSRAAVHMMADDGY 133

Query: 155 ---PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF 211
              P+V++   +I GL  +G+  +A  LF + +         PN++ Y S+IDGLCK   
Sbjct: 134 NCPPNVLSYNMVINGLFKEGEVDKAYTLFHEMLG----QGFPPNIVTYNSVIDGLCKAQA 189

Query: 212 VNKVRV----------------LFLDMKGRGIYPDAFVYNSLIRVYC----C--AVNWED 249
           ++K                   L   M G G+ PD   Y+ LI  YC    C  A N  D
Sbjct: 190 MDKAEAVLQQMFDKGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFD 249

Query: 250 A---KGNTSAALELHEEFVNGNGELGVICH-PDVLS-------------YCSIINSLCKD 292
           +   +G    A   +   ++G    G +    D+L+             +  +I +  K+
Sbjct: 250 SMVRRGQNPDAYT-YRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKN 308

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             +DKA   F++M+ +G  P+VV Y+++ID  C  GR++DA   F  + SEG  PD  ++
Sbjct: 309 ETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITF 368

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCL 412
            +LI+    I + ++   L  EMI+ G+ P N+  L                     N +
Sbjct: 369 TSLIHGLCTIGEWKKVEKLSFEMINRGIHP-NAIFL---------------------NTI 406

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIR 472
           +D LCK  R+  A + F ++   G +P+VV+YT++I G C++G ++              
Sbjct: 407 MDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMD-------------- 452

Query: 473 ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
              ++I+LL +M    ++PD +T S L     K+    + + L     S++ + + +T
Sbjct: 453 ---ESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAIT 507



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/414 (25%), Positives = 187/414 (45%), Gaps = 46/414 (11%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G VE  DA+  F+ M+    +P + +F SL+  L     +     LS  +   G+ P+
Sbjct: 342 KAGRVE--DAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPN 399

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            + LN +M+  CK   V +A     +I+     PDVV+   LI G C+ GK  E+  L  
Sbjct: 400 AIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLG 459

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           + V+   RP+ +     Y+++++G CK+G V+    L+ +M  + + P+A  YN ++   
Sbjct: 460 RMVSIGLRPDNV----TYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGL 515

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
             A       G   AA E + + V+   +LG+       +Y  ++  LC++  VD+A  +
Sbjct: 516 FHA-------GRVVAAREFYMKIVDSGIQLGIN------TYNIVLGGLCENSFVDEALRM 562

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F  ++S+    +V  ++ +I G   +GRI DA+ LF +I   G +PD   Y  +I S+  
Sbjct: 563 FQGLRSKEFQLEVRTFNIMIVGLLKVGRIGDAKSLFSAILPSGLVPDAIIYGLMIQSH-- 620

Query: 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
              +EE L                 + E+ ELF ++       +    N +V  L +   
Sbjct: 621 ---IEEGL-----------------LEESDELFLSMEKNGCTANSRTLNAIVRKLLEKGD 660

Query: 422 LRSAWELFKKL--PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
           +R A     K+    Y  E +     V++  +  E   +K    LP+  +   E
Sbjct: 661 VRRAGTYLTKIDEKEYSVEAST---AVLLISIVSERKYQKEVKFLPEKYQSFME 711


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 127/487 (26%), Positives = 216/487 (44%), Gaps = 82/487 (16%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           +P + ++N ++G L   +     I L   +   GL+PD  + +IL+N FC      +A +
Sbjct: 247 SPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKL 306

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
            L  ++     P+ +T   LI G   QG   +A  +  + VA  C   +  N+I + +++
Sbjct: 307 MLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVA--C--GIEANLIIWNTLL 362

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
           +G+CK G + K   +  +M  +G+ PD+  Y+ LI  +C          N + A EL +E
Sbjct: 363 NGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRG-------QNMARAFELLDE 415

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLC--------------------------------- 290
                        P VL+Y  IIN LC                                 
Sbjct: 416 MKKRK------LAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTA 469

Query: 291 --KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
             K+  V++++ +   M+ +GI+PDV  Y+SLI G+C   R+++AR   + +      P+
Sbjct: 470 HAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPN 529

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC----ILEAAELFR 395
             +Y   I+ YSK  ++E A   + EM+S GV P         +  C    + EA  +FR
Sbjct: 530 AHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFR 589

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            + + +   D+  ++ L+ GL ++ ++  A+ +F +L   G  PN  TY  +I G C +G
Sbjct: 590 FILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQG 649

Query: 456 GIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
            ++KA  LL +M      C+K I            PD +T +IL + L K        NL
Sbjct: 650 NVDKASQLLEEM------CIKGI-----------NPDIVTYNILIDGLCKAGEIERAKNL 692

Query: 516 LPSFLSR 522
                 R
Sbjct: 693 FDDIEGR 699



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 130/443 (29%), Positives = 205/443 (46%), Gaps = 49/443 (11%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           ER+   G+LPD    N L+  FCK   + +A   L  +L +   P+  T G  I G    
Sbjct: 484 ERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKA 543

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G+   A   F + ++  C   V+PNV  Y ++I+G CK+G V +   +F  +  R +  D
Sbjct: 544 GEMEIADRYFNEMLS--C--GVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQD 599

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
              Y+ LI          +A G  S   EL E+        G++  P+  +Y S+I+  C
Sbjct: 600 VQTYSVLIHGLSRNGKMHEAFGIFS---ELQEK--------GLL--PNAFTYNSLISGSC 646

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K   VDKA +L  +M  +GI PD+V Y+ LIDG C  G I+ A+ LF  IE  G  P+  
Sbjct: 647 KQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCV 706

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------NSCILE-----AAELFRTL 397
           +Y  +++ Y K +    A  L  EM+  GV PD        N C  E     A +LF+ +
Sbjct: 707 TYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEM 766

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
               F   ++ FN L++G CKS +L+ A  L +++      PN VTYT +I   C  G +
Sbjct: 767 LEKGFASTVS-FNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMM 825

Query: 458 EKAYDLLPDMEEK------------------IRECLKAIELLHKMAKRYVKPDEITVSIL 499
            +A  L  +M+E+                  I    +   L  +M  + ++PD++T  ++
Sbjct: 826 GEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVM 885

Query: 500 EELLNKDENCHECMNLLPSFLSR 522
            +   ++ N  E   L    L +
Sbjct: 886 IDAYCREGNVMEACKLKDEILVK 908



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/417 (26%), Positives = 193/417 (46%), Gaps = 33/417 (7%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALA-GKKYYVNFICLSERLNTIGLLPDFV 123
           E  + +A   F +++  +    + +++ L+  L+   K +  F   SE L   GLLP+  
Sbjct: 578 EGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSE-LQEKGLLPNAF 636

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           + N L++  CK   V  A   L  +  K  +PD+VT   LI GLC  G+   A  LF   
Sbjct: 637 TYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDI 696

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
                   + PN + YA+++DG CK         L  +M  RG+ PDAF+YN ++   C 
Sbjct: 697 EG----RGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCK 752

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
              +E        AL+L +E +    E G       +S+ ++I   CK   + +A  L  
Sbjct: 753 EEKFEK-------ALDLFQEML----EKGF---ASTVSFNTLIEGYCKSGKLQEANHLLE 798

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
           +M  +  IP+ V Y+SLID  C  G + +A++L++ ++    +P   +Y +L++ Y  I 
Sbjct: 799 EMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIG 858

Query: 364 KVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDLTVFN 410
            + E  +L+ EM++ G+ PD                ++EA +L   +      + +  ++
Sbjct: 859 NMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYD 918

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            L+  LCK        +L  ++   G    + T +V+  G  I G +++A ++L  M
Sbjct: 919 ALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSM 975



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 159/317 (50%), Gaps = 39/317 (12%)

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN 213
           SP+ V    L+      G   EA  +F     F+ RP+++    C  S++  L K   V 
Sbjct: 142 SPNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLS---C-NSLLGDLLKGNKVE 197

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
               +F  M    + PD + Y ++I  +C   N +DAK      LE+        GE G 
Sbjct: 198 LFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAK---RVLLEM--------GEKG- 245

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
            C P++++Y  II  LC+  L+D+A EL   M  +G++PD+  Y  LI+G+C+  R  +A
Sbjct: 246 -CSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREA 304

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAEL 393
           + + + +   G  P+  +YN LI+ + +   +E+A  +  EM++ G+             
Sbjct: 305 KLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGI------------- 351

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
                    E +L ++N L++G+CK+ ++  A E+ +++   G EP+  TY+++I G C 
Sbjct: 352 ---------EANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCR 402

Query: 454 EGGIEKAYDLLPDMEEK 470
              + +A++LL +M+++
Sbjct: 403 GQNMARAFELLDEMKKR 419



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 154/340 (45%), Gaps = 52/340 (15%)

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
           N  PN + +  ++D   K GF+ +   +FL  K     P     NSL+         +  
Sbjct: 140 NGSPNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLL--------GDLL 191

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
           KGN    +EL  +  +G     V+  PDV +Y ++I++ CK   V  AK + L+M  +G 
Sbjct: 192 KGNK---VELFWKVFDGMCAHKVL--PDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGC 246

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
            P++V Y+ +I G C    +D+A +L  S+  +G +PD  +Y+ LIN +   ++  EA  
Sbjct: 247 SPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKL 306

Query: 371 LYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
           +  EMI +G++P+                         +N L+DG  +   +  A+ +  
Sbjct: 307 MLLEMIDVGLKPEP----------------------ITYNALIDGFMRQGDIEQAFRIKD 344

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVK 490
           ++   G E N++ +  ++ G+C  G +EKA                 +E++ +M ++ V+
Sbjct: 345 EMVACGIEANLIIWNTLLNGVCKAGKMEKA-----------------LEIMQEMMEKGVE 387

Query: 491 PDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           PD  T S+L E   + +N      LL     R    + LT
Sbjct: 388 PDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLT 427


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 115/401 (28%), Positives = 193/401 (48%), Gaps = 30/401 (7%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142
           P P + +FN ++  L  +        L  R+  IG  PD V+ N L++ + K   + +  
Sbjct: 190 PAPNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVE 249

Query: 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202
             +G +      PDVVT   L+   C  G+   A   F +      R  V+ NV+ +++ 
Sbjct: 250 KLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMK----REGVMANVVTFSTF 305

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
           +D  CK+G V +   LF  M+ +G+ P+   Y  L+   C A   +DA       L L  
Sbjct: 306 VDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDA-------LVLTN 358

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
           E V     L V+      +Y  +++ LCK+  V +A+++F  M+  GI  + ++Y++LI 
Sbjct: 359 EMVQQGVPLNVV------TYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIH 412

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
           G+ +    + A  L   ++ +G   D S Y  LI     ++K++EA SL  +M   G++P
Sbjct: 413 GHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKP 472

Query: 383 DN--------SCIL-----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
           +N        +C       EA  L + + ++ F  ++  +  LVDGLCK+  +  A   F
Sbjct: 473 NNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHF 532

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            K+   G EPNV  YT ++ GLC  G ++KA  LL +M +K
Sbjct: 533 NKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDK 573



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 160/337 (47%), Gaps = 45/337 (13%)

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           + DA +AL R+      P+  T   ++  L  +     A  LF +  A        PNV 
Sbjct: 144 LDDAVLALARVRELRVPPNTRTCNHILLCLARERSSELAWRLFEQLPA--------PNVF 195

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            +  +ID LCK+G + + R L   MK  G  PD   YNSLI  Y                
Sbjct: 196 TFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGY-----------GKCGE 244

Query: 258 LELHEEFVNGNGEL-GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV 316
           LE  E+ V   GE+ G  C PDV++Y +++N  CK   +++A   F +MK  G++ +VV 
Sbjct: 245 LEEVEKLV---GEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVT 301

Query: 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
           +S+ +D +C  G + +A KLF  +  +G  P+  +Y  L++   K  ++++AL L  EM+
Sbjct: 302 FSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMV 361

Query: 377 SMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
             GV                       L++  +  LVDGLCK  ++  A ++F+ + R G
Sbjct: 362 QQGV----------------------PLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAG 399

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
              N + YT +I G  +    E+A  LL +M++K  E
Sbjct: 400 IRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGME 436



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 113/450 (25%), Positives = 189/450 (42%), Gaps = 59/450 (13%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E +L +A      M  +  +P + ++NSL+              L   +   G  PD V+
Sbjct: 207 EGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVT 266

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N L+NCFCK   +  A+     + R+    +VVT    +   C  G   EA  LF +  
Sbjct: 267 YNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMR 326

Query: 185 AFDCRPNVIP-------------------------------NVICYASIIDGLCKDGFVN 213
               +PN +                                NV+ Y  ++DGLCK+G V 
Sbjct: 327 MKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVA 386

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
           +   +F  M+  GI  +  +Y +LI  +    N E A       L L  E  +   EL  
Sbjct: 387 EAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERA-------LSLLSEMKDKGMEL-- 437

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID-D 332
               DV  Y ++I  LC    +D+AK L   M   G+ P+ V+Y++++D  C   R + +
Sbjct: 438 ----DVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDA-CFKARKESE 492

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------- 383
           A  L   +   G  P+  +Y  L++   K   ++EA+S + +M+ +G+ P+         
Sbjct: 493 AIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVD 552

Query: 384 ----NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
               N  + +A  L   + +    LD  V   L+DG  K   L+ A+ L  K+   G + 
Sbjct: 553 GLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQL 612

Query: 440 NVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           ++  YT  + G C    I++A ++L +M E
Sbjct: 613 DLYGYTCFVWGFCNLNMIQEAREVLSEMIE 642



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 109/258 (42%), Gaps = 52/258 (20%)

Query: 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV 215
           DV   G LI GLC   K  EA  L  K      +PN   NVI Y +I+D   K    ++ 
Sbjct: 438 DVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPN---NVI-YTNIMDACFKARKESEA 493

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
             L   M   G  P+   Y +L+   C A + ++A  + +  ++L  E            
Sbjct: 494 IALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLE------------ 541

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG------------ 323
            P+V +Y ++++ LCK+  +DKA  L  +M  +G+  D VV +SL+DG            
Sbjct: 542 -PNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFA 600

Query: 324 -----------------------YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
                                  +C +  I +AR++   +   G  PD   YN LIN   
Sbjct: 601 LKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNCLINKCQ 660

Query: 361 KIEKVEEALSLYGEMISM 378
           K+  +EEA  L  EM S+
Sbjct: 661 KLGNMEEAAILQNEMESL 678



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/276 (20%), Positives = 106/276 (38%), Gaps = 52/276 (18%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L++A    N M      P    + +++ A    +     I L +++   G  P+ V+  
Sbjct: 454 KLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYC 513

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++  CK   + +A     +++     P+V     L+ GLC  G+  +A  L  + +  
Sbjct: 514 ALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMID- 572

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             +   + NV+C  S++DG  K G +     L   M   G+  D + Y   +  +C    
Sbjct: 573 --KGMSLDNVVC-TSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFC---- 625

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                              N N                         ++ +A+E+  +M 
Sbjct: 626 -------------------NLN-------------------------MIQEAREVLSEMI 641

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
             GI PD VVY+ LI+    +G +++A  L   +ES
Sbjct: 642 ENGITPDAVVYNCLINKCQKLGNMEEAAILQNEMES 677



 Score = 40.4 bits (93), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 32/162 (19%), Positives = 69/162 (42%), Gaps = 6/162 (3%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G ++  +A+  FN M+ +   P + ++ +L+  L         + L + +   G+  D
Sbjct: 521 KAGSID--EAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLD 578

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V    LM+   K   + DAF    +++      D+    C + G C      EA  + +
Sbjct: 579 NVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLS 638

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
           + +       + P+ + Y  +I+   K G + +  +L  +M+
Sbjct: 639 EMI----ENGITPDAVVYNCLINKCQKLGNMEEAAILQNEME 676


>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 717

 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 121/478 (25%), Positives = 211/478 (44%), Gaps = 79/478 (16%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           SK GE+E    L     M++        ++N L+     K  +V    L E +      P
Sbjct: 261 SKKGELEQAKGL--IEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFP 318

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
              + N LM   CK + V+   +    +L+  F+PD+V+   L+ G C  G  +EA  LF
Sbjct: 319 TLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLF 378

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR- 239
            +     CR +++P VI Y ++I GLC  G+++    L  +M  +G++PD F Y  L+  
Sbjct: 379 DE---LKCR-DLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNG 434

Query: 240 ---------------------------VYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
                                       Y   +  E    +TS A  + EE       L 
Sbjct: 435 CFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEM------LA 488

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
               PDV++Y   +++LC+    ++A +L  +M S G+IPD V Y+S+I+G+   G +  
Sbjct: 489 AGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRK 548

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392
           AR++F  + S+G  P   +Y  LI++++  + ++ A   + +M+   V P N        
Sbjct: 549 AREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSV-PAN-------- 599

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
                        +  +N +++GLC + R+  A++ F ++   G  PN  +YT++I   C
Sbjct: 600 -------------VITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESC 646

Query: 453 IEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCH 510
             G  E                 +A+ L  +M  R ++PD  T S+  + L++D   H
Sbjct: 647 NMGYWE-----------------EALRLYREMLDRKIQPDSFTHSVFLKNLHRDYQVH 687



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 185/412 (44%), Gaps = 30/412 (7%)

Query: 72  LCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131
           L  F+ MI     P + + N +L  L  +        +   +   G+ P  V+ N +++ 
Sbjct: 165 LLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDS 224

Query: 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
           +CK   V  A   L  +  +   P+ VT   L+ GL  +G+  +A GL  + +  +   N
Sbjct: 225 YCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEML--NSGLN 282

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
           V  +   Y  +I+G C+ G   +   L  +M  R  +P    YN+L+   C  V     +
Sbjct: 283 V--SAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVR 340

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
              S  L+   +F            PD++S+ S++   C+   + +A  LF ++K R ++
Sbjct: 341 LRFSDMLK--SKFT-----------PDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLV 387

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           P V+ Y++LI G C+ G +D A +L   +  +G  PD  +Y  L+N   K+  V  A   
Sbjct: 388 PTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGF 447

Query: 372 YGEMISMGVRPD----NSCILEAAELFRT---------LHNTKFELDLTVFNCLVDGLCK 418
           + EM+S G++PD    N+ I+   ++  T         +    F  D+  +N  V  LC+
Sbjct: 448 FNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQ 507

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
                 A +L + +   G  P+ VTYT +I G    G + KA ++  +M  K
Sbjct: 508 QGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSK 559


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 128/527 (24%), Positives = 220/527 (41%), Gaps = 75/527 (14%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            + DAL   + M      P  P ++ +L A      + + + + E L+  G   D  + N
Sbjct: 137 RIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCN 196

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +++N  C    V  A   L  +      PDVV+   +++GLCM  ++     L  + V  
Sbjct: 197 LVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRM 256

Query: 187 DCRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKV 215
            C PN++                               P++  YA+IIDG+CK+G +   
Sbjct: 257 ACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVA 316

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
             +   M   G+ P+   YN+L++  C A  WE+ +       EL  E  + +      C
Sbjct: 317 HEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETE-------ELLAEMFDKD------C 363

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
             D +++  +++  C++ LVD+  EL   M   G +PDV+ Y+++I+G+C  G ID+A  
Sbjct: 364 PLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVM 423

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG--VRP----------- 382
           L  S+ + GC P+T SY  ++      E+  +A  L  +MI  G  + P           
Sbjct: 424 LLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLC 483

Query: 383 DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
               + +A EL + +       DL  ++ ++DGL K+ +   A EL   +   G  PN +
Sbjct: 484 KKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTI 543

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKM 484
            Y+ +   L  EG I K   +  ++++                  K  E  +AIE L  M
Sbjct: 544 IYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYM 603

Query: 485 AKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLTR 531
                 P+E T +IL   L  +    E   +L    S+      L +
Sbjct: 604 VSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKGALRKHLMK 650



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 147/327 (44%), Gaps = 32/327 (9%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDG-FVN 213
           P+  T   ++R LC +G+  +A  +  +     C P  IP +  Y  I++  C+ G F +
Sbjct: 120 PNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAP--IPPM--YHVILEAACRGGGFRS 175

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
            VRVL  D+  RG   D    N ++   C        +G+   AL L  +  +       
Sbjct: 176 AVRVLE-DLHARGCALDVGNCNLVLNAIC-------DQGSVDKALHLLRDLPSFG----- 222

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
            C PDV+SY +++  LC        +EL  +M      P++V +++LI   C  G  +  
Sbjct: 223 -CEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERV 281

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI------ 387
            ++   +   GC PD   Y T+I+   K   ++ A  +   M S G++P+  C       
Sbjct: 282 HEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKG 341

Query: 388 -------LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
                   E  EL   + +    LD   FN LVD  C++  +    EL +++  +G  P+
Sbjct: 342 LCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPD 401

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDM 467
           V+TYT +I G C EG I++A  LL  M
Sbjct: 402 VITYTTVINGFCKEGLIDEAVMLLKSM 428



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 157/382 (41%), Gaps = 70/382 (18%)

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           ++ G C  G+   A  L            V PN   Y  ++  LC  G +     +  +M
Sbjct: 96  MVAGYCRAGQLESARRLAAAV-------PVPPNAYTYFPVVRALCARGRIADALAVLDEM 148

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
             RG  P   +Y+ ++   C         G  SA   L +    G       C  DV + 
Sbjct: 149 PRRGCAPIPPMYHVILEAAC------RGGGFRSAVRVLEDLHARG-------CALDVGNC 195

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
             ++N++C    VDKA  L  D+ S G  PDVV Y++++ G C+  R    ++L   +  
Sbjct: 196 NLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVR 255

Query: 343 EGCIPDTSSYNTLINSYSK---IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN 399
             C P+  ++NTLI+   +    E+V E L+   +M   G  P                 
Sbjct: 256 MACPPNIVTFNTLISYLCRNGLFERVHEVLA---QMAEHGCTP----------------- 295

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
                D+ ++  ++DG+CK   L+ A E+  ++P YG +PNVV Y  ++ GLC     E+
Sbjct: 296 -----DIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEE 350

Query: 460 AYDLLPDMEEKIRECL--------------------KAIELLHKMAKRYVKPDEITVSIL 499
             +LL +M +K  +C                     + IELL +M      PD IT + +
Sbjct: 351 TEELLAEMFDK--DCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTV 408

Query: 500 EELLNKDENCHECMNLLPSFLS 521
                K+    E + LL S  +
Sbjct: 409 INGFCKEGLIDEAVMLLKSMTA 430



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 115/286 (40%), Gaps = 52/286 (18%)

Query: 234 YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDV 293
           YN+++  YC A   E A+   +A                V   P+  +Y  ++ +LC   
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAA----------------VPVPPNAYTYFPVVRALCARG 136

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353
            +  A  +  +M  RG  P   +Y  +++  C  G    A ++   + + GC  D  + N
Sbjct: 137 RIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCN 196

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLV 413
            ++N+      V++AL L  ++ S G  PD                      +  +N ++
Sbjct: 197 LVLNAICDQGSVDKALHLLRDLPSFGCEPD----------------------VVSYNAVL 234

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
            GLC + R     EL +++ R    PN+VT+  +I  LC  G  E+ +++L  M E    
Sbjct: 235 KGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAE--HG 292

Query: 474 CLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519
           C   I +   +     K   + V+            HE +N +PS+
Sbjct: 293 CTPDIRMYATIIDGICKEGHLKVA------------HEILNRMPSY 326


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 112/364 (30%), Positives = 174/364 (47%), Gaps = 31/364 (8%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+  + N ++N +CK+  V +A   +  I+     PD  T   LI G C +     A  +
Sbjct: 216 PNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKV 275

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F +     CR     N + Y  +I GLC +  +++   LF+ MK    YP    Y  LI+
Sbjct: 276 FKEMPLKGCR----RNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIK 331

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C            S AL L +E      E G+   P++ +Y  +I+SLC    ++KA+
Sbjct: 332 ALC-------GSERKSEALNLVKEM----EEKGI--KPNIHTYTVLIDSLCSQCKLEKAR 378

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           EL   M  +G++P+V+ Y++LI+GYC  G I+DA  +   +ES    P+T +YN LI  Y
Sbjct: 379 ELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGY 438

Query: 360 SKIEKVEEALSLYGEMISMGVRPD----NSCI---------LEAAELFRTLHNTKFELDL 406
            K   V +A+ +  +M+   V PD    NS I           A  L   +++     D 
Sbjct: 439 CK-RNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDP 497

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             +  ++D LCKS R+  A +LF  L +    PNVV YT +I G C  G + +A+ +L  
Sbjct: 498 WTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEK 557

Query: 467 MEEK 470
           M  K
Sbjct: 558 MLSK 561



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 123/460 (26%), Positives = 216/460 (46%), Gaps = 36/460 (7%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  +++A+  F  M      P + ++  L+ AL G +     + L + +   G+ P+  +
Sbjct: 301 ERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHT 360

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
             +L++  C    +  A   LG++L K   P+V+T   LI G C +G   +A       V
Sbjct: 361 YTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDA----LDVV 416

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
                 N+ PN   Y  +I G CK   V+K   +   M  R + PD   YNSLI   C +
Sbjct: 417 ELMESRNLRPNTRTYNELIKGYCKRN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRS 475

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
            N++ A    S         +N  G +     PD  +Y S+I+SLCK   V++A +LF  
Sbjct: 476 GNFDSAYRLLS--------LMNDRGLV-----PDPWTYTSMIDSLCKSKRVEEACDLFDS 522

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           ++ + +IP+VV+Y++LIDGYC  G++++A  +   + S+ C+P++ ++N LI+      K
Sbjct: 523 LEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGK 582

Query: 365 VEEALSLYGEMISMGVRPDNS--CIL-----------EAAELFRTLHNTKFELDLTVFNC 411
           ++EA  L  +M+ + ++P  S   IL            A   F+ + ++  + D   +  
Sbjct: 583 LKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTT 642

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM---- 467
            +   C+  RL+ A ++  K+   G  P++ TY+ +I G    G    A+ +L  M    
Sbjct: 643 FIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTG 702

Query: 468 -EEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
            E      L  I+ L +M    VK  E  V ++  ++  D
Sbjct: 703 CEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEFD 742



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 153/319 (47%), Gaps = 52/319 (16%)

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
           CY ++++ L + G V++++ ++++M    + P+ + YN ++  YC   N E+A       
Sbjct: 185 CYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEAN------ 238

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
                ++V+   E G+   PD  +Y S+I   C+   +D A ++F +M  +G   + V Y
Sbjct: 239 -----QYVSMIVEAGL--DPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAY 291

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           + LI G C+  RID+A  LFV ++ + C P   +Y  LI +    E+  EAL+L  EM  
Sbjct: 292 THLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEE 351

Query: 378 MGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
            G++P                      ++  +  L+D LC   +L  A EL  ++   G 
Sbjct: 352 KGIKP----------------------NIHTYTVLIDSLCSQCKLEKARELLGQMLEKGL 389

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-----------------IRECLKAIEL 480
            PNV+TY  +I G C  G IE A D++  ME +                  R   KA+ +
Sbjct: 390 MPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRNVHKAMGV 449

Query: 481 LHKMAKRYVKPDEITVSIL 499
           L+KM +R V PD +T + L
Sbjct: 450 LNKMLERKVLPDVVTYNSL 468



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 108/412 (26%), Positives = 170/412 (41%), Gaps = 30/412 (7%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G +E  DAL     M      P   ++N L+     +  +     L++ L    +LPD
Sbjct: 405 KRGMIE--DALDVVELMESRNLRPNTRTYNELIKGYCKRNVHKAMGVLNKMLER-KVLPD 461

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+ N L++  C+      A+  L  +  +   PD  T   +I  LC   +  EA  LF 
Sbjct: 462 VVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFD 521

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
                D    VIPNV+ Y ++IDG CK G VN+  ++   M  +   P++  +N+LI   
Sbjct: 522 SLEQKD----VIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGL 577

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C         G    A  L E+ V       +   P V +   +I+ L KD   D A   
Sbjct: 578 C-------TDGKLKEATLLEEKMVK------IDLQPTVSTDTILIHRLLKDGDFDHAYRR 624

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F  M S G  PD   Y++ I  YC  GR+ DA  +   ++  G  PD  +Y++LI  Y  
Sbjct: 625 FQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGD 684

Query: 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
           + +   A  +   M   G  P       +   F +L     E+          G+C    
Sbjct: 685 LGRTNSAFVVLKRMHDTGCEP-------SQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSN 737

Query: 422 LRS---AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           +       EL +K+  +G  PN  +Y  ++ G+C  G +  A  +   M++K
Sbjct: 738 MMEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQK 789



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 170/368 (46%), Gaps = 46/368 (12%)

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA- 250
           V PN+  Y  +++G CK G V +       +   G+ PD F Y SLI  YC   + + A 
Sbjct: 214 VCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAF 273

Query: 251 -----------KGNTSAALEL-H----EEFVNGNGELGVI-----CHPDVLSYCSIINSL 289
                      + N  A   L H    E  ++   +L V      C+P V +Y  +I +L
Sbjct: 274 KVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKAL 333

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
           C      +A  L  +M+ +GI P++  Y+ LID  C   +++ AR+L   +  +G +P+ 
Sbjct: 334 CGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNV 393

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF--RTLHNT------- 400
            +YN LIN Y K   +E+AL +   M S  +RP+     E  + +  R +H         
Sbjct: 394 ITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRNVHKAMGVLNKM 453

Query: 401 ---KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
              K   D+  +N L+DG C+S    SA+ L   +   G  P+  TYT MI  LC    +
Sbjct: 454 LERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRV 513

Query: 458 EKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVS--ILEELLNKDENCHECMNL 515
           E+A DL   +E+K  + +  + +   +   Y K  ++  +  +LE++L+K        N 
Sbjct: 514 EEACDLFDSLEQK--DVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSK--------NC 563

Query: 516 LPSFLSRN 523
           LP+ L+ N
Sbjct: 564 LPNSLTFN 571



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 108/426 (25%), Positives = 178/426 (41%), Gaps = 68/426 (15%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142
           P P+  ++ S++ +L   K       L + L    ++P+ V    L++ +CK   V++A 
Sbjct: 495 PDPW--TYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAH 552

Query: 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202
           + L ++L K   P+ +T   LI GLC  GK  EA+ L  K V  D +P V  + I    +
Sbjct: 553 LMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTI----L 608

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK--------GNT 254
           I  L KDG  +     F  M   G  PDA  Y + I+ YC     +DA+           
Sbjct: 609 IHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGV 668

Query: 255 SAALELHEEFVNGNGELGVI--------------CHPDVLSYCSIINSLCK--------- 291
           S  L  +   + G G+LG                C P   ++ S+I  L +         
Sbjct: 669 SPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGG 728

Query: 292 -------------DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
                        D++V    EL   M   G+ P+   Y  L+ G C +G +  A K+F 
Sbjct: 729 EPGVCVMSNMMEFDIVV----ELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFD 784

Query: 339 SIES-EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-NSCIL-------- 388
            ++  EG  P    +N L++   K+EK  EA  +  +MI +G  P   SC +        
Sbjct: 785 HMQQKEGISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILICRLYKK 844

Query: 389 ----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
                   +F+ L    +  D   +  ++DG+ K   + + +ELF  + + G   +  TY
Sbjct: 845 GEKERGTSVFQNLLQCGYYDDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCTFSSQTY 904

Query: 445 TVMICG 450
           +++I G
Sbjct: 905 SLLIEG 910


>gi|357498925|ref|XP_003619751.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494766|gb|AES75969.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 562

 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 113/361 (31%), Positives = 162/361 (44%), Gaps = 58/361 (16%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L  R++   L P+ V  N +++  CK    +DAF     ++ K   PDV T   LI G C
Sbjct: 228 LLRRVDGKLLQPNLVMYNTIIDSMCKDKLDNDAFDLYSEMVSKRIFPDVNTYNALINGFC 287

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
           + GK  +A GLF K  +     N+ P+V  +  ++D  CK+G V + +     M  +GI 
Sbjct: 288 IVGKLKDAIGLFNKMTS----ENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIK 343

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           PD   YNSL+  YC       AK              N     GV    +V SY  +IN 
Sbjct: 344 PDVVTYNSLMDRYCLVNEVNKAKS-----------IFNTMSHRGVTA--NVRSYSIMINR 390

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
            CK  +VD+A +LF +M  + I P+V+ YSSLIDG C  GRI  A +L   +   G  PD
Sbjct: 391 FCKIKMVDQAMKLFKEMHHKQIFPNVITYSSLIDGLCKSGRISYALELNDEMHDRGQQPD 450

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTV 408
                               ++L  ++   G+RP                      ++  
Sbjct: 451 I-------------------ITLTRQLKDQGIRP----------------------NMFT 469

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +  L+DGLCK  RL  A  +F+ L   G    V TYTVMI G C +G  ++A  LL  M+
Sbjct: 470 YTILIDGLCKGGRLEDARNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEAMTLLSKMK 529

Query: 469 E 469
           +
Sbjct: 530 D 530



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 148/264 (56%), Gaps = 14/264 (5%)

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
           G +  P+++ Y +II+S+CKD L + A +L+ +M S+ I PDV  Y++LI+G+C++G++ 
Sbjct: 234 GKLLQPNLVMYNTIIDSMCKDKLDNDAFDLYSEMVSKRIFPDVNTYNALINGFCIVGKLK 293

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NS-- 385
           DA  LF  + SE   PD  ++N L++++ K  +V+EA +    M+  G++PD    NS  
Sbjct: 294 DAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDVVTYNSLM 353

Query: 386 ---CIL----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
              C++    +A  +F T+ +     ++  ++ +++  CK   +  A +LFK++      
Sbjct: 354 DRYCLVNEVNKAKSIFNTMSHRGVTANVRSYSIMINRFCKIKMVDQAMKLFKEMHHKQIF 413

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSI 498
           PNV+TY+ +I GLC  G I  A +L  +M ++ ++    I L  ++  + ++P+  T +I
Sbjct: 414 PNVITYSSLIDGLCKSGRISYALELNDEMHDRGQQP-DIITLTRQLKDQGIRPNMFTYTI 472

Query: 499 LEELLNKDENCHECMNLLPSFLSR 522
           L + L K     +  N+    L +
Sbjct: 473 LIDGLCKGGRLEDARNIFEDLLVK 496



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 142/300 (47%), Gaps = 21/300 (7%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           NDA   ++ M+  +  P + ++N+L+          + I L  ++ +  + PD  + NIL
Sbjct: 258 NDAFDLYSEMVSKRIFPDVNTYNALINGFCIVGKLKDAIGLFNKMTSENINPDVYTFNIL 317

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           ++ FCK   V +A   L  ++++   PDVVT   L+   C+  +  +A  +F        
Sbjct: 318 VDAFCKEGRVKEAKNGLAMMMKQGIKPDVVTYNSLMDRYCLVNEVNKAKSIFNTM----S 373

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
              V  NV  Y+ +I+  CK   V++   LF +M  + I+P+   Y+SLI   C      
Sbjct: 374 HRGVTANVRSYSIMINRFCKIKMVDQAMKLFKEMHHKQIFPNVITYSSLIDGLC------ 427

Query: 249 DAKGNTSAALELHEEFVNGNGELGVIC----------HPDVLSYCSIINSLCKDVLVDKA 298
              G  S ALEL++E  +   +  +I            P++ +Y  +I+ LCK   ++ A
Sbjct: 428 -KSGRISYALELNDEMHDRGQQPDIITLTRQLKDQGIRPNMFTYTILIDGLCKGGRLEDA 486

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
           + +F D+  +G    V  Y+ +I G+C  G  D+A  L   ++   CIP+  +Y  +I S
Sbjct: 487 RNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEAMTLLSKMKDNCCIPNAVTYEIIIRS 546



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 162/363 (44%), Gaps = 41/363 (11%)

Query: 46  TVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVN 105
           TV     +L  L  +S+ G +     L     +      P +  +N+++ ++   K   +
Sbjct: 200 TVHTDAPILAKLQSDSEQGSLSQRAPLQLLRRVDGKLLQPNLVMYNTIIDSMCKDKLDND 259

Query: 106 FICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165
              L   + +  + PD  + N L+N FC +  + DA     ++  +  +PDV T   L+ 
Sbjct: 260 AFDLYSEMVSKRIFPDVNTYNALINGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVD 319

Query: 166 GLCMQGKFTEA-SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224
             C +G+  EA +GL     A   +  + P+V+ Y S++D  C    VNK + +F  M  
Sbjct: 320 AFCKEGRVKEAKNGL-----AMMMKQGIKPDVVTYNSLMDRYCLVNEVNKAKSIFNTMSH 374

Query: 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCS 284
           RG+  +   Y+ +I  + C +   D       A++L +E  +          P+V++Y S
Sbjct: 375 RGVTANVRSYSIMINRF-CKIKMVD------QAMKLFKEMHHKQ------IFPNVITYSS 421

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVV----------------VYSSLIDGYCLMG 328
           +I+ LCK   +  A EL  +M  RG  PD++                 Y+ LIDG C  G
Sbjct: 422 LIDGLCKSGRISYALELNDEMHDRGQQPDIITLTRQLKDQGIRPNMFTYTILIDGLCKGG 481

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL 388
           R++DAR +F  +  +G     ++Y  +I+ +      +EA++L  +M       DN CI 
Sbjct: 482 RLEDARNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEAMTLLSKM------KDNCCIP 535

Query: 389 EAA 391
            A 
Sbjct: 536 NAV 538



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 17/131 (12%)

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
           +L R +     + +L ++N ++D +CK      A++L+ ++      P+V TY  +I G 
Sbjct: 227 QLLRRVDGKLLQPNLVMYNTIIDSMCKDKLDNDAFDLYSEMVSKRIFPDVNTYNALINGF 286

Query: 452 CIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHE 511
           CI G ++                  AI L +KM    + PD  T +IL +   K+    E
Sbjct: 287 CIVGKLK-----------------DAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKE 329

Query: 512 CMNLLPSFLSR 522
             N L   + +
Sbjct: 330 AKNGLAMMMKQ 340


>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 603

 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 115/436 (26%), Positives = 196/436 (44%), Gaps = 46/436 (10%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L E +   G+ PD +S  +++  +CK+  + +A   L  +L + F  D  T   +I    
Sbjct: 192 LFEEMCVRGVQPDSISYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFS 251

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
            +G  T A   F + V     PN+I N  C   +I+GLCK G + +   +  +M G+G  
Sbjct: 252 GKGYTTRALWYFRRLVDMGLEPNLI-NFTC---MIEGLCKRGSIKQAFEMLEEMVGKGWK 307

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           P+ + + SLI   C        KG T  A  L  + V           P+VL+Y ++I+ 
Sbjct: 308 PNVYTHTSLIDGLC-------KKGWTEKAFRLFLKLVRSENH-----KPNVLTYTAMISG 355

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
            C++  +++A+ L   MK +G++P+   Y++LIDG+C  G  + A  L   + SEG  P+
Sbjct: 356 YCREDKLNRAEMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPN 415

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFR 395
             +YN ++N   K  +V+EA  +  +    G++PD                I +A  LF 
Sbjct: 416 LCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFN 475

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            +     + D+  +  L+   C+  R++ +   F++  R G  P   TYT MICG C EG
Sbjct: 476 KMLKIGIQPDIHSYTTLIAVFCRENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREG 535

Query: 456 GIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
            +                   A++  H+++     PD IT   +   L K     E  +L
Sbjct: 536 NLT-----------------LAMKFFHRLSDHGCAPDSITYGAIISGLCKQSKRDEARSL 578

Query: 516 LPSFLSRNQEESKLTR 531
             S + +     ++TR
Sbjct: 579 YDSMIEKGLVPCEVTR 594



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 176/383 (45%), Gaps = 38/383 (9%)

Query: 88  PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGR 147
            +F  ++   +GK Y    +    RL  +GL P+ ++   ++   CK   +  AF  L  
Sbjct: 241 ATFTLIISRFSGKGYTTRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEE 300

Query: 148 ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207
           ++ K + P+V T   LI GLC +G   +A  LF K V  +   N  PNV+ Y ++I G C
Sbjct: 301 MVGKGWKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSE---NHKPNVLTYTAMISGYC 357

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
           ++  +N+  +L   MK +G+ P+   Y +LI  +C A N+E A            + +N 
Sbjct: 358 REDKLNRAEMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAY-----------DLMNL 406

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
               G    P++ +Y +I+N LCK   V +A ++  D    G+ PD   Y+ L+  +C  
Sbjct: 407 MSSEGF--SPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQ 464

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
             I  A  LF  +   G  PD  SY TLI  + +  +++E+   + E + +G+ P N   
Sbjct: 465 ENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKESEMFFEEAVRIGIIPTNK-- 522

Query: 388 LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
                                +  ++ G C+   L  A + F +L  +G  P+ +TY  +
Sbjct: 523 --------------------TYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYGAI 562

Query: 448 ICGLCIEGGIEKAYDLLPDMEEK 470
           I GLC +   ++A  L   M EK
Sbjct: 563 ISGLCKQSKRDEARSLYDSMIEK 585



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 158/386 (40%), Gaps = 70/386 (18%)

Query: 160 LGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLF 219
           + C++      G+  EA  +  +         ++PN      II    + G V    +LF
Sbjct: 138 MRCMVESFSEVGRLKEAVEMVIEMH----NQGLVPNTRTLNWIIKVTSEMGLVEYAELLF 193

Query: 220 LDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC---- 275
            +M  RG+ PD+  Y  ++ +YC   N  +A    S  LE    FV  N    +I     
Sbjct: 194 EEMCVRGVQPDSISYRVMVVMYCKIGNILEADKWLSVMLE--RGFVVDNATFTLIISRFS 251

Query: 276 --------------------HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV 315
                                P+++++  +I  LCK   + +A E+  +M  +G  P+V 
Sbjct: 252 GKGYTTRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVY 311

Query: 316 VYSSLIDGYCLMGRIDDARKLFVS-IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
            ++SLIDG C  G  + A +LF+  + SE   P+  +Y  +I+ Y + +K+  A  L   
Sbjct: 312 THTSLIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSR 371

Query: 375 MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
           M   G+ P+ +                       +  L+DG CK+     A++L   +  
Sbjct: 372 MKEQGLVPNTN----------------------TYTTLIDGHCKAGNFERAYDLMNLMSS 409

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEI 494
            G  PN+ TY  ++ GLC  G +++AY +L D                   +  +KPD+ 
Sbjct: 410 EGFSPNLCTYNAIVNGLCKRGRVQEAYKMLED-----------------GFQNGLKPDKF 452

Query: 495 TVSILEELLNKDENCHECMNLLPSFL 520
           T +IL     K EN  + + L    L
Sbjct: 453 TYNILMSEHCKQENIRQALALFNKML 478



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 113/253 (44%), Gaps = 17/253 (6%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L  R+   GL+P+  +   L++  CK      A+  +  +  + FSP++ T   ++ GLC
Sbjct: 368 LLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLC 427

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
            +G+  EA     K +    +  + P+   Y  ++   CK   + +   LF  M   GI 
Sbjct: 428 KRGRVQEA----YKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQ 483

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           PD   Y +LI V+C     +++           E F      +G+I  P   +Y S+I  
Sbjct: 484 PDIHSYTTLIAVFCRENRMKES-----------EMFFEEAVRIGII--PTNKTYTSMICG 530

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
            C++  +  A + F  +   G  PD + Y ++I G C   + D+AR L+ S+  +G +P 
Sbjct: 531 YCREGNLTLAMKFFHRLSDHGCAPDSITYGAIISGLCKQSKRDEARSLYDSMIEKGLVPC 590

Query: 349 TSSYNTLINSYSK 361
             +  TL   Y K
Sbjct: 591 EVTRITLAYEYCK 603



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 87/166 (52%), Gaps = 15/166 (9%)

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
           V   +++ +  +GR+ +A ++ + + ++G +P+T + N +I   S++  VE A  L+ EM
Sbjct: 137 VMRCMVESFSEVGRLKEAVEMVIEMHNQGLVPNTRTLNWIIKVTSEMGLVEYAELLFEEM 196

Query: 376 ISMGVRPDN-------------SCILEAAELFRTLHNTKFELDLTVFNCLVDGLC-KSWR 421
              GV+PD+               ILEA +    +    F +D   F  ++     K + 
Sbjct: 197 CVRGVQPDSISYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFSGKGYT 256

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            R+ W  F++L   G EPN++ +T MI GLC  G I++A+++L +M
Sbjct: 257 TRALW-YFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEM 301



 Score = 45.1 bits (105), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 2/128 (1%)

Query: 57  LSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           +SE+ K  +  +  AL  FN M+ +   P + S+ +L+     +          E    I
Sbjct: 458 MSEHCK--QENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKESEMFFEEAVRI 515

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G++P   +   ++  +C+   ++ A     R+     +PD +T G +I GLC Q K  EA
Sbjct: 516 GIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYGAIISGLCKQSKRDEA 575

Query: 177 SGLFTKFV 184
             L+   +
Sbjct: 576 RSLYDSMI 583


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 115/449 (25%), Positives = 197/449 (43%), Gaps = 77/449 (17%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL+PD V+ N LM+  CK     +A      I  K   PD+++   L+ G   +G+F + 
Sbjct: 372 GLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDM 431

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
           + LF           ++ +  C+  +I+   K G +++  ++F +M+G+G+ P+   Y +
Sbjct: 432 NNLFHSMT----DNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYAT 487

Query: 237 LIRVYCCAVNWEDAKGNTSAALEL--------HEEFVNG---NGEL------------GV 273
           +I   C      DA    S  + +        +   + G   +G+L              
Sbjct: 488 VIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQG 547

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
           I  P++  + SII+SLC +  V  A+++F  +   G  PD+  ++SLIDGYCL+G++D A
Sbjct: 548 IPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKA 607

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---------- 383
             +  ++ S G  PD  +Y+TLIN Y K  ++++ L L+ EM+   V+P           
Sbjct: 608 FGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDG 667

Query: 384 --------------------------------------NSCILEAAELFRTLHNTKFELD 405
                                                 N+C  EA  LF  L     + +
Sbjct: 668 LFRAGRTSAAKKMFHEMIESGTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFE 727

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
           + + N ++  L K  R   A +LF  +   G  PN  TY VMI  L  EG +E+A  +  
Sbjct: 728 IAILNTMIHALYKVKRREEAHDLFASVSASGLVPNASTYGVMIINLLKEGSVEEADIMFS 787

Query: 466 DMEEKIRECLKAIELLHKMAKRYVKPDEI 494
            ME+    C  +  LL+ + +  ++  EI
Sbjct: 788 SMEKT--GCAPSSRLLNDIIRMLLQKGEI 814



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 122/438 (27%), Positives = 195/438 (44%), Gaps = 54/438 (12%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMP-SFNSLLGALAGKKYYV-------------NFI 107
           ++G     DA   F+ ++  Q TP    + N  L ALA  +  V             N I
Sbjct: 93  RAGTFSTEDAHHLFDELLR-QDTPVHGRALNGFLAALARARDSVACSDAPALAVALFNRI 151

Query: 108 CLSERLNTIGLLPDFV-SLNILMNCFCKMI--GVSDAFVALGRILRKVFSPDVVTLGCLI 164
           C  E    +  +P  V +  ILM+C C+     +  AF A  R+LR     D +     +
Sbjct: 152 CREEAGPRV--VPLTVHTYGILMDCCCRARRPDLGPAFFA--RLLRAGLRTDGIVTNTFL 207

Query: 165 RGLCMQGKFTEA-SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM- 222
           + LC   +  EA S L  +     C    +P+   Y ++I  LC      +   + L M 
Sbjct: 208 KCLCYAKRTDEALSMLLHRMSELGC----VPDAFSYNTVIKSLCGGSRSQEALDMLLRMT 263

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
           KG G  PD   Y  +I       +    +G  S A  L  E V    + GV+  P+V++Y
Sbjct: 264 KGDGCSPDVVSYTMVI-------HGLFMEGEISKACNLFNEMV----QKGVV--PNVVTY 310

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
            SI+++LCK   +DKA+ +   M    I PD V Y+++I GY  +GR  +A K+F  +  
Sbjct: 311 NSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTR 370

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILE 389
           EG IPD  ++N+L++S  K ++ +EA  ++  + + G +PD                 ++
Sbjct: 371 EGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVD 430

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
              LF ++ +     D   FN L++   K   +  A  +F ++   G  PNVVTY  +I 
Sbjct: 431 MNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIA 490

Query: 450 GLCIEGGIEKAYDLLPDM 467
            LC  G +  A + L  M
Sbjct: 491 ALCRMGRLADAMEKLSQM 508



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 126/293 (43%), Gaps = 54/293 (18%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  + +A   FN +IH+   P + +FNSL          ++  CL  +++          
Sbjct: 566 EGRVMNAQDVFNLVIHIGDRPDIFTFNSL----------IDGYCLVGKMD---------- 605

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
                    K  GV DA V+ G        PDVVT   LI G    G+  +   LF + +
Sbjct: 606 ---------KAFGVLDAMVSAGT------EPDVVTYSTLINGYFKSGRIDDGLILFREML 650

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
              C+  V P  + Y+ ++DGL + G  +  + +F +M   G       Y  +++  C  
Sbjct: 651 ---CK-RVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSISTYTIILQGLC-- 704

Query: 245 VNWEDAKGN-TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                 + N T  A+ L  +     G + +     +L+  ++I++L K    ++A +LF 
Sbjct: 705 ------RNNCTDEAITLFHKL----GAMNLKFEIAILN--TMIHALYKVKRREEAHDLFA 752

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            + + G++P+   Y  +I      G +++A  +F S+E  GC P +   N +I
Sbjct: 753 SVSASGLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTGCAPSSRLLNDII 805


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 113/432 (26%), Positives = 189/432 (43%), Gaps = 68/432 (15%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           A   +  M+ M     + +FN ++  L  +  +         +   G+ P+ V+ N ++N
Sbjct: 201 AWFVYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVIN 260

Query: 131 CFCKMIGVSDAFVALGRILR----KVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            +C    +   F A  +I +    K   PD  T    I  LC + +  EASG+  K +  
Sbjct: 261 GYC----LRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLL-- 314

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                ++PN + Y ++IDG C  G ++K      +M  RGI    F YN LI        
Sbjct: 315 --ESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKR 372

Query: 247 WEDAK----------------------------GNTSAALELHEEFVNGNGELGVICHPD 278
            E+A+                            GN   AL L +E V  N        P 
Sbjct: 373 IEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKN------IRPT 426

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
           V +Y S+I+   K   + +A+E F      G++PD++++++LIDG+C+ G ID A +L  
Sbjct: 427 VETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLK 486

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398
            +++   +PD  ++NTL+  Y +  KVEEA  L  EM   G++PD+              
Sbjct: 487 EMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDH-------------- 532

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
                     +N L+ G  K   ++ A E+F ++   G +P ++TY  +I G    G  +
Sbjct: 533 --------ISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEAD 584

Query: 459 KAYDLLPDMEEK 470
            A +LL +M+ K
Sbjct: 585 HAEELLREMQSK 596



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 110/429 (25%), Positives = 196/429 (45%), Gaps = 49/429 (11%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           E +  + +    V+ NI++N  C+      A   +G +      P+VVT   +I G C++
Sbjct: 206 EEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLR 265

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           GKF  AS +F          N+ P+   Y S I  LCK+  + +   +   +   G+ P+
Sbjct: 266 GKFEAASKIFKTMKD----KNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPN 321

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
           A  YN+LI   CC       KG+   A    +E +N     G++    V +Y  +I++L 
Sbjct: 322 AVTYNALIDG-CCN------KGDLDKAFAYRDEMMNR----GIVA--SVFTYNLLIHALF 368

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
            +  +++A+++  +M+ +G+ PDVV Y+  I+GYC  G    A  LF  +  +   P   
Sbjct: 369 LEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVE 428

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTL 397
           +Y +LI+ + K  ++ EA   + + I  G+ PD             N  I  A +L + +
Sbjct: 429 TYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEM 488

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
            N K   D   FN L+ G C+  ++  A +L  ++   G +P+ ++Y  +I G    G +
Sbjct: 489 DNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDM 548

Query: 458 EKAYDLLPDM------------------EEKIRECLKAIELLHKMAKRYVKPDEIT-VSI 498
           + A ++  +M                    KI E   A ELL +M  + + PD+ T + +
Sbjct: 549 KDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSKGITPDDSTYLYV 608

Query: 499 LEELLNKDE 507
           +E +   D+
Sbjct: 609 IEAMKTNDD 617



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 145/312 (46%), Gaps = 17/312 (5%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P   ++N+L+     K          + +   G++    + N+L++       + +A   
Sbjct: 320 PNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDM 379

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           +  +  K   PDVVT    I G C  G   +A  LF + V      N+ P V  Y S+ID
Sbjct: 380 IKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMV----EKNIRPTVETYTSLID 435

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
              K   +++    F      G+ PD  ++N+LI  +C         GN   A +L +E 
Sbjct: 436 VFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHC-------VNGNIDRAFQLLKEM 488

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
            N          PD +++ +++   C++  V++AK+L  +MK RGI PD + Y++LI GY
Sbjct: 489 DNAK------VVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGY 542

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
              G + DA ++F  + S G  P   +YN LI  YSKI + + A  L  EM S G+ PD+
Sbjct: 543 SKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSKGITPDD 602

Query: 385 SCILEAAELFRT 396
           S  L   E  +T
Sbjct: 603 STYLYVIEAMKT 614



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 118/484 (24%), Positives = 215/484 (44%), Gaps = 50/484 (10%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           +++  P+P  PSF+ L   L      V F  LS   N + +    V  ++L++ +C+   
Sbjct: 105 ILYRLPSP-KPSFHILQPILHTTTPTVIFNELSLARNRLNVKTTLV-FDLLLSAYCQFRK 162

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
             +A   L  +      P   T   L+  L    K   A  ++ + V      N+  +++
Sbjct: 163 PDEALECLNLMKENEIIPKTETCNSLLSLLLKLNKIKMAWFVYEEMVKM----NIKSSIV 218

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            +  +I+ LC++G   K +     M+  G+ P+   YN++I  YC        +G   AA
Sbjct: 219 TFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCL-------RGKFEAA 271

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
            ++ +   + N        PD  +Y S I+ LCK+  +++A  +   +   G++P+ V Y
Sbjct: 272 SKIFKTMKDKN------LKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTY 325

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           ++LIDG C  G +D A      + + G +    +YN LI++    +++EEA  +  EM  
Sbjct: 326 NALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMRE 385

Query: 378 MGVRPD----NSCI---------LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
            GV PD    N  I          +A  LF  +        +  +  L+D   K  R+  
Sbjct: 386 KGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSE 445

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE--------------- 469
           A E FKK  + G  P+++ +  +I G C+ G I++A+ LL +M+                
Sbjct: 446 AEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQ 505

Query: 470 ---KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEE 526
              + R+  +A +LL +M +R +KPD I+ + L    +K  +  + + +    LS   + 
Sbjct: 506 GYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDP 565

Query: 527 SKLT 530
           + LT
Sbjct: 566 TLLT 569



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 81/214 (37%), Gaps = 38/214 (17%)

Query: 23  NSKKPISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVE-----------LNDA 71
           N+KK +SL  E     +  N   TVE  T L+    + ++  E E           L D 
Sbjct: 407 NAKKALSLFDE----MVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDI 462

Query: 72  LCF----------------FNYMIHMQPTPFMP---SFNSLLGALAGKKYYVNFICLSER 112
           + F                F  +  M     +P   +FN+L+     ++       L + 
Sbjct: 463 IMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDE 522

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +   G+ PD +S N L++ + K   + DA      +L   F P ++T   LI+G    G+
Sbjct: 523 MKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGE 582

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGL 206
              A  L  +  +      + P+   Y  +I+ +
Sbjct: 583 ADHAEELLREMQS----KGITPDDSTYLYVIEAM 612


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 116/415 (27%), Positives = 200/415 (48%), Gaps = 35/415 (8%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E++ AL     M      P    + +L+ +L+        + L E +  +G +PD  + N
Sbjct: 226 EVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFN 285

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            ++   CK   +++A   + R+L + F+PD +T G L+ GLC  G+   A  LF +    
Sbjct: 286 DVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK- 344

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM-KGRGIYPDAFVYNSLIRVYCCAV 245
                  P  + + ++I G    G ++  + +  DM    GI PD   YNSLI  Y    
Sbjct: 345 -------PTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGY---- 393

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
            W+  KG    ALE+  +  N        C P+V SY  +++  CK   +D+A  L  +M
Sbjct: 394 -WK--KGLVGLALEVLRDMRNKG------CKPNVYSYTILVDGFCKLGKIDEAYNLLNEM 444

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
            + G+ P+ V ++ LI  +C   RI +A ++F  +  +GC PD  ++N+LI+   +++++
Sbjct: 445 SADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEI 504

Query: 366 EEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDLTVFNCL 412
           + AL L  +MIS GV  +                I EA +L   +      LD   +N L
Sbjct: 505 KHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSL 564

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           + GLC++  +  A  LF+K+ R G  P+ ++  ++I GLC  G +E+A +   +M
Sbjct: 565 IKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEM 619



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 119/442 (26%), Positives = 195/442 (44%), Gaps = 45/442 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            +N+AL     M  M   P   +FN ++  L           +  R+   G  PD ++  
Sbjct: 261 RVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYG 320

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            LMN  CK IG  DA   L     ++  P  V    LI G    G+  +A  + +  V  
Sbjct: 321 YLMNGLCK-IGRVDAAKDL---FYRIPKPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVT- 375

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                ++P+V  Y S+I G  K G V     +  DM+ +G  P+ + Y  L+  +C    
Sbjct: 376 --SYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGK 433

Query: 247 WEDAKG--NTSAALELHEEFVNGNGELGVICH--------------------PDVLSYCS 284
            ++A    N  +A  L    V  N  +   C                     PDV ++ S
Sbjct: 434 IDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNS 493

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           +I+ LC+   +  A  L  DM S G++ + V Y++LI+ +   G I +ARKL   +  +G
Sbjct: 494 LISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQG 553

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN-SC------------ILEAA 391
            + D  +YN+LI    +  +V++A SL+ +M+  G+ P + SC            + EA 
Sbjct: 554 SLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAV 613

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
           E  + +       D+  FN L++GLC++ R+     +F+KL   G  P+ VTY  ++  L
Sbjct: 614 EFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWL 673

Query: 452 CIEGGIEKAYDLLPDMEEKIRE 473
           C +GG    YD    ++E I +
Sbjct: 674 C-KGGF--VYDACLLLDEGIED 692



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/406 (26%), Positives = 189/406 (46%), Gaps = 33/406 (8%)

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           F  M+  +  P + +F  ++ AL       + + +   +   G +P+ V    L++   K
Sbjct: 199 FYDMLSRKIPPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSK 258

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
              V++A   L  +      PD  T   +I GLC   +  EA+ +  + +         P
Sbjct: 259 CNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLI----RGFTP 314

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           + I Y  +++GLCK G V+  + LF     R   P + ++N+LI  +      +DAK   
Sbjct: 315 DDITYGYLMNGLCKIGRVDAAKDLFY----RIPKPTSVIFNTLIHGFVTHGRLDDAKAVL 370

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
           S  +  +          G++  PDV +Y S+I    K  LV  A E+  DM+++G  P+V
Sbjct: 371 SDMVTSY----------GIV--PDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNV 418

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
             Y+ L+DG+C +G+ID+A  L   + ++G  P+T  +N LI+++ K  ++ EA+ ++ E
Sbjct: 419 YSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFRE 478

Query: 375 MISMGVRPD----NSC---------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
           M   G +PD    NS          I  A  L R + +     +   +N L++   +   
Sbjct: 479 MPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGE 538

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           ++ A +L  ++   G   + +TY  +I GLC  G ++KA  L   M
Sbjct: 539 IKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKM 584



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 87/268 (32%), Positives = 133/268 (49%), Gaps = 17/268 (6%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL P+ V  N L++ FCK   + +A      + RK   PDV T   LI GLC   +   A
Sbjct: 448 GLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHA 507

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L    ++      V+ N + Y ++I+   + G + + R L  +M  +G   D   YNS
Sbjct: 508 LWLLRDMIS----EGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNS 563

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI+  C A       G    A  L E+ +      G++  P  +S   +IN LC+  +V+
Sbjct: 564 LIKGLCRA-------GEVDKARSLFEKMLRD----GLV--PSSISCNILINGLCRSGMVE 610

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A E   +M  RG  PD+V ++SLI+G C  GRI+D   +F  +++EG  PDT +YNTL+
Sbjct: 611 EAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLM 670

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDN 384
           +   K   V +A  L  E I  G  P++
Sbjct: 671 SWLCKGGFVYDACLLLDEGIEDGFVPND 698



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 176/391 (45%), Gaps = 31/391 (7%)

Query: 83  PTPFMPSFNSLL-GALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDA 141
           P P    FN+L+ G +   +       LS+ + + G++PD  + N L+  + K   V  A
Sbjct: 343 PKPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLA 402

Query: 142 FVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYAS 201
              L  +  K   P+V +   L+ G C  GK  EA  L  +  A   +PN +     +  
Sbjct: 403 LEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVG----FNC 458

Query: 202 IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261
           +I   CK+  + +   +F +M  +G  PD + +NSLI   C              AL L 
Sbjct: 459 LISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLC-------EVDEIKHALWLL 511

Query: 262 EEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
            + ++     GV+   + ++Y ++IN+  +   + +A++L  +M  +G + D + Y+SLI
Sbjct: 512 RDMISE----GVVA--NTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLI 565

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
            G C  G +D AR LF  +  +G +P + S N LIN   +   VEEA+    EM+  G  
Sbjct: 566 KGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGST 625

Query: 382 PD----NSCI---------LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
           PD    NS I          +   +FR L       D   +N L+  LCK   +  A  L
Sbjct: 626 PDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLL 685

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
             +    G  PN  T+++++  L  +  +++
Sbjct: 686 LDEGIEDGFVPNDRTWSILLQSLVPQETLDR 716



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/390 (25%), Positives = 169/390 (43%), Gaps = 66/390 (16%)

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           V L IL++  C  +  +  +  L R +     P + T G +++ LC   +   A  +   
Sbjct: 181 VVLEILVSGNCHKVAANVFYDMLSRKI----PPTLFTFGVVMKALCAVNEVDSALSVLRD 236

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
                C    +PN + Y ++I  L K   VN+   L  +M   G  PDA  +N +I   C
Sbjct: 237 MTKHGC----VPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLC 292

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
                +  + N +A + ++   + G         PD ++Y  ++N LCK   VD AK+LF
Sbjct: 293 -----KFDRINEAAKM-VNRMLIRG-------FTPDDITYGYLMNGLCKIGRVDAAKDLF 339

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS-IESEGCIPDTSSYNTLINSYSK 361
             +      P  V++++LI G+   GR+DDA+ +    + S G +PD  +YN+LI  Y K
Sbjct: 340 YRIPK----PTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWK 395

Query: 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
              V  AL +  +M + G +P+                      +  +  LVDG CK  +
Sbjct: 396 KGLVGLALEVLRDMRNKGCKPN----------------------VYSYTILVDGFCKLGK 433

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELL 481
           +  A+ L  ++   G +PN V +  +I   C E  I +A                 +E+ 
Sbjct: 434 IDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEA-----------------VEIF 476

Query: 482 HKMAKRYVKPDEITV-SILEELLNKDENCH 510
            +M ++  KPD  T  S++  L   DE  H
Sbjct: 477 REMPRKGCKPDVYTFNSLISGLCEVDEIKH 506



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 117/258 (45%), Gaps = 17/258 (6%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  + +A+  F  M      P + +FNSL+  L       + + L   + + G++ + V+
Sbjct: 466 EHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVT 525

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N L+N F +   + +A   +  ++ +    D +T   LI+GLC  G+  +A  LF K +
Sbjct: 526 YNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKML 585

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
               R  ++P+ I    +I+GLC+ G V +      +M  RG  PD   +NSLI   C A
Sbjct: 586 ----RDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRA 641

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
              ED     +   +L  E +           PD ++Y ++++ LCK   V  A  L  +
Sbjct: 642 GRIEDG---LTMFRKLQAEGI----------PPDTVTYNTLMSWLCKGGFVYDACLLLDE 688

Query: 305 MKSRGIIPDVVVYSSLID 322
               G +P+   +S L+ 
Sbjct: 689 GIEDGFVPNDRTWSILLQ 706



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 2/109 (1%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           +SG VE  +A+ F   M+    TP + +FNSL+  L       + + +  +L   G+ PD
Sbjct: 605 RSGMVE--EAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPD 662

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
            V+ N LM+  CK   V DA + L   +   F P+  T   L++ L  Q
Sbjct: 663 TVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNDRTWSILLQSLVPQ 711



 Score = 43.1 bits (100), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 82/216 (37%), Gaps = 32/216 (14%)

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
           VY  LI      G      +L + ++ EG +   S + +++  Y K     +   L  EM
Sbjct: 107 VYQVLIGKLGSNGEFKTIDRLLMQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEM 166

Query: 376 --------------ISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
                         + + +    +C   AA +F  + + K    L  F  ++  LC    
Sbjct: 167 RNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAVNE 226

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL---------PDMEE--- 469
           + SA  + + + ++G  PN V Y  +I  L     + +A  LL         PD E    
Sbjct: 227 VDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFND 286

Query: 470 ------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                 K     +A +++++M  R   PD+IT   L
Sbjct: 287 VILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYL 322


>gi|449475988|ref|XP_004154607.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 950

 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 113/406 (27%), Positives = 195/406 (48%), Gaps = 34/406 (8%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
            DAL  F+ M      P    ++ +L  L   K   +   L  ++   G   D ++ N+L
Sbjct: 215 QDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVL 274

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           +N FCK   + DAF  L  + +      V+  GCLI GL    ++ EA   + K +    
Sbjct: 275 LNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKML---- 330

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
           R N+ P+V+ Y  +I GL ++G V +   L  +M  RG+ PD   YN+LI+ + C + + 
Sbjct: 331 RENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGF-CDMGYL 389

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
           D   +    +  H+            C P+  +Y  +I  +CK+ L++KA+ +F +M+  
Sbjct: 390 DEAESLRLEISKHD------------CFPNNHTYSILICGMCKNGLINKAQHIFKEMEKL 437

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G +P VV ++SLI+G C   R+++AR LF  +E             ++   S   ++ + 
Sbjct: 438 GCLPSVVTFNSLINGLCKANRLEEARLLFYQME-------------IVRKPSLFLRLSQG 484

Query: 369 LSLYGEMISMGVRPDNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
                ++ S+ V  +  C    IL+A +L   L ++    D+  +N L++G CK   +  
Sbjct: 485 TDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNING 544

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           A++LFK++   G  P+ VTY  +I GL   G  E A ++   M +K
Sbjct: 545 AFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKK 590



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 110/422 (26%), Positives = 185/422 (43%), Gaps = 43/422 (10%)

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           F+ M      P + +FN +L  L  K+ ++  + +  ++    L PD V+  IL++  CK
Sbjct: 151 FSLMRDFDCKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCK 210

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
                DA V    +  +   P+ +    ++ GLC   K  +A  LF+K  A  C      
Sbjct: 211 TCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCN----R 266

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           ++I Y  +++G CK G+++    L   +   G       Y  LI     A  +E+A    
Sbjct: 267 DLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAH--- 323

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
                 +++ +  N        PDV+ Y  +I  L ++  V +A  L  +M  RG+ PD 
Sbjct: 324 ----MWYQKMLREN------IKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDT 373

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           + Y++LI G+C MG +D+A  L + I    C P+  +Y+ LI    K   + +A  ++ E
Sbjct: 374 ICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKE 433

Query: 375 MISMGVRPD----NSCI--------LEAAEL--------------FRTLHNTKFELDLTV 408
           M  +G  P     NS I        LE A L               R    T    D+  
Sbjct: 434 MEKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIAS 493

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
              +++ LC+S  +  A++L  +L   G  P++ TY ++I G C  G I  A+ L  +M+
Sbjct: 494 LQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQ 553

Query: 469 EK 470
            K
Sbjct: 554 LK 555



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 174/394 (44%), Gaps = 55/394 (13%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD +   I++    +   V++A   LG +  +   PD +    LI+G C  G   EA  L
Sbjct: 336 PDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESL 395

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             +    DC     PN   Y+ +I G+CK+G +NK + +F +M+  G  P    +NSLI 
Sbjct: 396 RLEISKHDC----FPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLIN 451

Query: 240 VYCCAVNWEDAK--------------------GNTS----AALELHEEFVNGNGEL---- 271
             C A   E+A+                    G       A+L++  E +  +G +    
Sbjct: 452 GLCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAY 511

Query: 272 ---------GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
                    GV+  PD+ +Y  +IN  CK   ++ A +LF +M+ +G +PD V Y +LID
Sbjct: 512 KLLMQLVDSGVL--PDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLID 569

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS----- 377
           G    GR +DA ++F  +  +GC+P++S+Y T++    +   +  ALS++ + +      
Sbjct: 570 GLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSVWMKYLRDFRGW 629

Query: 378 -------MGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
                  +    DN  +  A      +       DL  +   + GL ++ R   A+ +F 
Sbjct: 630 EDEKVRVVAESFDNEELQTAIRRLLEMDIKSKNFDLAPYTIFLIGLVQAKRDCEAFAIFS 689

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            L  +    +  +  ++I  LC+   ++ A D+ 
Sbjct: 690 VLKDFKMNISSASCVMLIGRLCMVENLDMAMDVF 723



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 128/272 (47%), Gaps = 35/272 (12%)

Query: 199 YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL 258
           ++ +I+   + G   K    F  M+     PD F +N ++            K     AL
Sbjct: 131 FSVLIEAYSEAGMDEKAVESFSLMRDFDCKPDLFAFNLILHFLV-------RKEAFLLAL 183

Query: 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS 318
            ++ + +  N       +PDV++Y  +I+ LCK      A  LF +M  RGI+P+ ++YS
Sbjct: 184 AVYNQMLKCN------LNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYS 237

Query: 319 SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
            ++ G C   +I DA++LF  + + GC  D  +YN L+N + K   +++A +        
Sbjct: 238 IVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFT-------- 289

Query: 379 GVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
                         L + L      L +  + CL++GL ++ R   A   ++K+ R   +
Sbjct: 290 --------------LLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIK 335

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           P+V+ YT+MI GL  EG + +A  LL +M E+
Sbjct: 336 PDVMLYTIMIRGLSQEGRVTEALTLLGEMTER 367



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 117/269 (43%), Gaps = 31/269 (11%)

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           II  L K+   +   ++  ++K+  I      +S LI+ Y   G  + A + F  +    
Sbjct: 99  IIGKLIKENAFELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFSLMRDFD 158

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------NSC-ILEAA 391
           C PD  ++N +++   + E    AL++Y +M+   + PD             +C   +A 
Sbjct: 159 CKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDAL 218

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
            LF  + +     +  +++ ++ GLC++ ++  A  LF K+   G   +++TY V++ G 
Sbjct: 219 VLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGF 278

Query: 452 CIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDE 493
           C  G ++ A+ LL  + +                  + R   +A     KM +  +KPD 
Sbjct: 279 CKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDV 338

Query: 494 ITVSILEELLNKDENCHECMNLLPSFLSR 522
           +  +I+   L+++    E + LL     R
Sbjct: 339 MLYTIMIRGLSQEGRVTEALTLLGEMTER 367


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 107/389 (27%), Positives = 193/389 (49%), Gaps = 53/389 (13%)

Query: 148 ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207
           ++R+   P+V T   +I  LC  GK  +A  +      + C PNV+     Y ++IDG C
Sbjct: 214 MIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVV----SYNTLIDGYC 269

Query: 208 K---DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           K   +G + K   +  +M    + P+   +N LI  +     W+D   N   ++++ +E 
Sbjct: 270 KLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGF-----WKD--DNLPGSMKVFKEM 322

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           ++ +        P+V+SY S+IN LC    + +A  +   M S G+ P+++ Y++LI+G+
Sbjct: 323 LDQD------VKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGF 376

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD- 383
           C    + +A  +F S++ +G +P T  YN LI++Y K+ K+++  +L  EM   G+ PD 
Sbjct: 377 CKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDV 436

Query: 384 ------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
                       N  I  A +LF  L  +K   DL  F+ L++G C+    R A  L K+
Sbjct: 437 GTYNCLIAGLCRNGNIEAAKKLFDQL-TSKGLPDLVTFHILMEGYCRKGESRKAAMLLKE 495

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIR------------------- 472
           + + G +P  +TY +++ G C EG ++ A ++   ME++ R                   
Sbjct: 496 MSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKG 555

Query: 473 ECLKAIELLHKMAKRYVKPDEITVSILEE 501
           +   A  LL++M ++ + P+ IT  I++E
Sbjct: 556 KLEDANMLLNEMLEKGLVPNRITYEIVKE 584



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 176/390 (45%), Gaps = 53/390 (13%)

Query: 84  TPFMPSFNSLLGAL-----AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGV 138
           +P + S+N+L+         GK Y  + +      N +   P+  + NIL++ F K   +
Sbjct: 255 SPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVS--PNLTTFNILIDGFWKDDNL 312

Query: 139 SDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVIC 198
             +      +L +   P+V++   LI GLC  GK +EA  +  K V+      V PN+I 
Sbjct: 313 PGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVS----AGVQPNLIT 368

Query: 199 YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL 258
           Y ++I+G CK+  + +   +F  +KG+G  P   +YN LI  YC         G      
Sbjct: 369 YNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYC-------KLGKIDDGF 421

Query: 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS 318
            L EE        G++  PDV +Y  +I  LC++  ++ AK+LF  + S+G +PD+V + 
Sbjct: 422 ALKEEM----EREGIV--PDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKG-LPDLVTFH 474

Query: 319 SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
            L++GYC  G    A  L   +   G  P   +YN ++  Y K   ++ A ++  +M   
Sbjct: 475 ILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQM--- 531

Query: 379 GVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
                        E  R L      +++  +N L+ G  +  +L  A  L  ++   G  
Sbjct: 532 -------------EKERRLR-----MNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLV 573

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           PN +TY ++   +  +G        +PD+E
Sbjct: 574 PNRITYEIVKEEMVDQG-------FVPDIE 596



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 137/310 (44%), Gaps = 35/310 (11%)

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           F  M+     P + S+NSL+  L         I + +++ + G+ P+ ++ N L+N FCK
Sbjct: 319 FKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCK 378

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
              + +A    G +  +   P       LI   C  GK  +   L  +      R  ++P
Sbjct: 379 NDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEME----REGIVP 434

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           +V  Y  +I GLC++G +   + LF  +  +G+ PD   ++ L+  YC        KG +
Sbjct: 435 DVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYC-------RKGES 486

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM-KSRGIIPD 313
             A  L +E      ++G+   P  L+Y  ++   CK+  +  A  +   M K R +  +
Sbjct: 487 RKAAMLLKEM----SKMGL--KPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMN 540

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           V  Y+ L+ GY   G+++DA  L   +  +G +P+  +Y          E V+E      
Sbjct: 541 VASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITY----------EIVKE------ 584

Query: 374 EMISMGVRPD 383
           EM+  G  PD
Sbjct: 585 EMVDQGFVPD 594



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 111/251 (44%), Gaps = 17/251 (6%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++++A+   + M+     P + ++N+L+            + +   +   G +P     N
Sbjct: 346 KISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYN 405

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +L++ +CK+  + D F     + R+   PDV T  CLI GLC  G    A  LF +  + 
Sbjct: 406 MLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTS- 464

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                 +P+++ +  +++G C+ G   K  +L  +M   G+ P    YN +++ YC    
Sbjct: 465 ----KGLPDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYC---- 516

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
               +GN  AA  +  +      E       +V SY  ++    +   ++ A  L  +M 
Sbjct: 517 ---KEGNLKAATNMRTQM-----EKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEML 568

Query: 307 SRGIIPDVVVY 317
            +G++P+ + Y
Sbjct: 569 EKGLVPNRITY 579



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 14/131 (10%)

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
           +++ +   K + ++  FN +++ LCK+ ++  A ++ + +  YG  PNVV+Y  +I G C
Sbjct: 210 VYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYC 269

Query: 453 IEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHEC 512
             GG  K Y              KA  +L +M +  V P+  T +IL +   KD+N    
Sbjct: 270 KLGGNGKMY--------------KADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGS 315

Query: 513 MNLLPSFLSRN 523
           M +    L ++
Sbjct: 316 MKVFKEMLDQD 326


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 123/445 (27%), Positives = 200/445 (44%), Gaps = 61/445 (13%)

Query: 78  MIH-MQPTPFMP---SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
           +IH M    F+P   +++ ++G L       N   L + +   G++PD  +  IL++CF 
Sbjct: 476 VIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFS 535

Query: 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
           K   +  A   L  ++R    P VVT   LI       K + A+ LF   +A  C     
Sbjct: 536 KAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGC----F 591

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA----------------FVYNSL 237
           PNVI Y ++IDG CK G + K   ++  M+G    PD                   Y +L
Sbjct: 592 PNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGAL 651

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           +   C A   +DA+        L   FV+G       C P+ + Y ++I+  CK   +D+
Sbjct: 652 VDGLCKAHKVKDARD------LLETMFVDG-------CEPNTIVYDALIDGFCKAAKLDE 698

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A+E+F  M  RG  P+V  YSSLID      R+D   K+   +    C P+   Y  +I+
Sbjct: 699 AQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMID 758

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
             SK+ K +EA  L   M   G +P+                      +  +  ++DG  
Sbjct: 759 GLSKVAKTDEAYKLMLMMEEKGCKPN----------------------VVTYTAMIDGFG 796

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKA 477
           K+ ++    ELF+++   G  PN VTYTV+I   C  G +++AY LL +M++      K 
Sbjct: 797 KAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWP--KH 854

Query: 478 IELLHKMAKRYVKPDEITVSILEEL 502
           +    K+ + Y +   +++ +LEE+
Sbjct: 855 VSSYCKVIEGYKREFILSLGLLEEV 879



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 120/473 (25%), Positives = 205/473 (43%), Gaps = 67/473 (14%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC---KMIG---- 137
           P    FNSL+ A      +     L +++      P +V  NIL+   C   ++ G    
Sbjct: 376 PSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTF 435

Query: 138 -----VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNV 192
                  +  ++ G +L KV   +VV+     R LC  GKF +A  +  + +        
Sbjct: 436 ELAEKAYNEMLSAGTVLNKV---NVVSFA---RCLCGFGKFEKAYKVIHEMMG----NGF 485

Query: 193 IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252
           +P+   Y+ +I  LC    V     LF +MKG G+ PD + Y  LI  +  A       G
Sbjct: 486 VPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKA-------G 538

Query: 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
               A    +E V         C P V++Y ++I++  K   V  A ELF  M ++G  P
Sbjct: 539 IIKQAHNWLDEMVRDG------CEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFP 592

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
           +V+ Y++LIDGYC  G I+ A +++  +  +  IPD   Y  + N+ ++   V       
Sbjct: 593 NVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNV------- 645

Query: 373 GEMISMGVRPDNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
              ++ G   D  C    + +A +L  T+     E +  V++ L+DG CK+ +L  A E+
Sbjct: 646 ---VTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEV 702

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------K 470
           F K+   G  PNV TY+ +I  L  +  ++    +L  M E                  K
Sbjct: 703 FHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSK 762

Query: 471 IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
           + +  +A +L+  M ++  KP+ +T + + +   K     +C+ L     S+ 
Sbjct: 763 VAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKG 815



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 126/513 (24%), Positives = 196/513 (38%), Gaps = 124/513 (24%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           +   ++ +GL  D  +L       CK   V     AL  I ++ F P+ +    +I GLC
Sbjct: 263 VHREMSELGLSMDEFTLGFFAQALCK---VGKWREALSLIEKEDFVPNTILYNKMISGLC 319

Query: 169 MQGKFTEASGLFTKFVAFDCRPNV-------------------------------IPNVI 197
               F EA     +  +  C PNV                                P+  
Sbjct: 320 EASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYT 379

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA------VNWEDAK 251
            + S++   CK    +    L   M+     P   VYN LI   C        V +E A+
Sbjct: 380 IFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAE 439

Query: 252 ----------------------------GNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
                                       G    A ++  E + GNG +     PD  +Y 
Sbjct: 440 KAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMM-GNGFV-----PDTSTYS 493

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
            +I  LC    V+ A  LF +MK  G++PDV  Y+ LID +   G I  A      +  +
Sbjct: 494 EVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRD 553

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC----ILEA 390
           GC P   +Y TLI++Y K +KV  A  L+  MI+ G  P         D  C    I +A
Sbjct: 554 GCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKA 613

Query: 391 AEL----------------FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
            ++                F+  +N   + ++  +  LVDGLCK+ +++ A +L + +  
Sbjct: 614 CQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFV 673

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEI 494
            G EPN + Y  +I G C    +++A                  E+ HKM +R   P+  
Sbjct: 674 DGCEPNTIVYDALIDGFCKAAKLDEAQ-----------------EVFHKMVERGYNPNVY 716

Query: 495 TVSILEELLNKDENCHECMNLLPSFLSRNQEES 527
           T S L + L KD+     ++L+   LS+  E S
Sbjct: 717 TYSSLIDRLFKDKR----LDLVLKVLSKMLENS 745



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 148/353 (41%), Gaps = 48/353 (13%)

Query: 64  GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV 123
           G+ ++ D   +F    ++   P + ++ +L+  L       +   L E +   G  P+ +
Sbjct: 622 GDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTI 681

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
             + L++ FCK   + +A     +++ + ++P+V T   LI  L    +      + +K 
Sbjct: 682 VYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKM 741

Query: 184 VAFDCRPNVI-------------------------------PNVICYASIIDGLCKDGFV 212
           +   C PN++                               PNV+ Y ++IDG  K G V
Sbjct: 742 LENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKV 801

Query: 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
           +K   LF +M  +G  P+   Y  LI  +CCA       G+   A  L EE         
Sbjct: 802 DKCLELFREMGSKGCAPNFVTYTVLIN-HCCAT------GHLDEAYALLEEMKQ------ 848

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
                 V SYC +I    ++ ++     L  +++  G  P +++Y  LID +   GR++ 
Sbjct: 849 TYWPKHVSSYCKVIEGYKREFILSLG--LLEEVEKNGSAPTILLYKVLIDNFVKAGRLEV 906

Query: 333 ARKLFVSI--ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           A +L   +   S       + Y +LI S+S   K++ A  L+ +MI  GV PD
Sbjct: 907 ALELHKEVISASMSMTAKKNLYTSLIYSFSYASKIDHAFELFYDMIRDGVIPD 959



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 125/320 (39%), Gaps = 62/320 (19%)

Query: 202 IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261
           +I   C++G  N        +K  G  P    YN+L++V+  A   + A+        +H
Sbjct: 212 LIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQ-------LVH 264

Query: 262 EEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
            E      ELG+      L +     +LCK   V K +E    ++    +P+ ++Y+ +I
Sbjct: 265 REM----SELGLSMDEFTLGF--FAQALCK---VGKWREALSLIEKEDFVPNTILYNKMI 315

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
            G C     ++A      + S  CIP+  +Y  L+      +++     +   MI+ G  
Sbjct: 316 SGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCY 375

Query: 382 PDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
           P                        T+FN LV   CKS     A++L KK+ +   +P  
Sbjct: 376 P----------------------SYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGY 413

Query: 442 VTYTVMICGLCIEGGI---------EKAYDLLPDMEEKIRE--------CL-------KA 477
           V Y ++I  +C  G +         EKAY+ +      + +        CL       KA
Sbjct: 414 VVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKA 473

Query: 478 IELLHKMAKRYVKPDEITVS 497
            +++H+M      PD  T S
Sbjct: 474 YKVIHEMMGNGFVPDTSTYS 493


>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
 gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
          Length = 951

 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 117/420 (27%), Positives = 201/420 (47%), Gaps = 48/420 (11%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           ER+   G+ P+ V+   L+  +CK  G+ +AF     ++R    PDVVTL  L+ GLC  
Sbjct: 246 ERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGLCRD 305

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G+F+EA  LF +      +  V PN + Y ++ID L K    ++   L  +M  RG+  D
Sbjct: 306 GQFSEAYALFREM----DKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRGVVMD 361

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
             +Y +L+         E+AK      +  H +  N          P+ ++Y  ++++ C
Sbjct: 362 LVMYTALMDRLGKEGKIEEAKD-----VLRHAQSDN--------ITPNFVTYTVLVDAHC 408

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           +   +D A+++ L M+ + +IP+VV +SS+I+G    G +  A      ++  G  P+  
Sbjct: 409 RAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVV 468

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI------------LEAAE-LFRTL 397
           +Y TLI+ + K +  E AL +Y +M+  GV  +N  +            +E AE LF+ +
Sbjct: 469 TYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDM 528

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                 LD   +  L+DGL K+  + +A+++ ++L      P+ V Y V I  LC  G  
Sbjct: 529 DERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKF 588

Query: 458 EKAYDLLPDMEE----------------KIRE--CLKAIELLHKMAKRYVKPDEITVSIL 499
            +A   L +M                  + RE    KA++LL +M +  +KP+ IT + L
Sbjct: 589 SEAKSFLKEMRNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTL 648



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 115/399 (28%), Positives = 180/399 (45%), Gaps = 59/399 (14%)

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           D VS NI +    +      A   L  + ++  S D VT+   + GLC  G   EA+ L 
Sbjct: 114 DTVSYNIFLAALSEQGHGRLAPPVLSEMCKRGVSWDGVTVSTALVGLCRTGLVGEAAALA 173

Query: 181 TKFVAFDCRPNVIP--NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
              V    R   I   +V+ + ++IDG CK   +     +   M  +G+  D   YNSL+
Sbjct: 174 EMLV----RGRGIDGLDVVGWNALIDGYCKVQDMAAALAVVERMTTQGVALDVVGYNSLV 229

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
             +  +       G+  AALE+ E  +  +G       P+V++Y ++I   CK   +D+A
Sbjct: 230 AGFFHS-------GDADAALEVVER-MKADG-----VEPNVVTYTALIGEYCKGKGMDEA 276

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
             L+  M   G++PDVV  S+L+DG C  G+  +A  LF  ++  G  P+  +Y TLI+S
Sbjct: 277 FSLYEGMVRSGVLPDVVTLSALVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDS 336

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
            +K  +  E+L L GEM+S GV                       +DL ++  L+D L K
Sbjct: 337 LAKARRGSESLGLLGEMVSRGV----------------------VMDLVMYTALMDRLGK 374

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI------- 471
             ++  A ++ +        PN VTYTV++   C  G I+ A  +L  MEEK        
Sbjct: 375 EGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVT 434

Query: 472 ----------RECL-KAIELLHKMAKRYVKPDEITVSIL 499
                     R CL KA + + KM    + P+ +T   L
Sbjct: 435 FSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTL 473



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 111/432 (25%), Positives = 194/432 (44%), Gaps = 67/432 (15%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + ++ +L+G     K       L E +   G+LPD V+L+ L++  C+    S+A+ A
Sbjct: 255 PNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGLCRDGQFSEAY-A 313

Query: 145 LGRILRKV-FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
           L R + K+  +P+ VT   LI  L    + +E+ GL  + V+      V+ +++ Y +++
Sbjct: 314 LFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVS----RGVVMDLVMYTALM 369

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
           D L K+G + + + +    +   I P+   Y  L+  +C A N + A+      L++ E+
Sbjct: 370 DRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAE---QVLLQMEEK 426

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
            V           P+V+++ SIIN L K   + KA +    MK  GI P+VV Y +LIDG
Sbjct: 427 SV----------IPNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLIDG 476

Query: 324 YCLM-----------------------------------GRIDDARKLFVSIESEGCIPD 348
           +                                      G I+ A  LF  ++  G + D
Sbjct: 477 FFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLD 536

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS---------CIL----EAAELFR 395
             +Y TL++   K   +  A  +  E++   + PD           C L    EA    +
Sbjct: 537 HVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFLK 596

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            + NT  E D   +N ++   C+  +   A +L K++ R   +PN++TYT ++ GL   G
Sbjct: 597 EMRNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAG 656

Query: 456 GIEKAYDLLPDM 467
            ++KA  LL +M
Sbjct: 657 VVKKAKFLLNEM 668



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/416 (24%), Positives = 184/416 (44%), Gaps = 47/416 (11%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           L PD V  N+ +NC C +   S+A   L  +      PD  T   +I   C +GK ++A 
Sbjct: 568 LSPDAVVYNVFINCLCTLGKFSEAKSFLKEMRNTGLEPDQATYNTMIAARCREGKTSKAL 627

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            L  +      R ++ PN+I Y +++ GL + G V K + L  +M   G  P +  +  +
Sbjct: 628 KLLKEMK----RNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMASAGFAPTSLTHQRV 683

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           ++  C      D        LE+HE        +G   H D+  Y ++++ LC   +   
Sbjct: 684 LQA-CSGSRRPDV------ILEIHELM------MGAGLHADITVYNTLVHVLCCHGMARN 730

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A  +  +M +RGI PD + +++LI G+C    +D+A  ++  +  +G  P+ +++NTL+ 
Sbjct: 731 ATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLG 790

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFEL 404
                 ++ EA ++  +M  +G+ P+N             S  +EA  L+  + +  F  
Sbjct: 791 GLESAGRIGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIP 850

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
             + +N L+    K+  +  A ELF ++ R G     V +T               YD+L
Sbjct: 851 KASTYNSLMSDFAKAGMMNQAKELFSEMKRRG-----VLHT------------SSTYDIL 893

Query: 465 PDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
            +   K+R  ++   LL  M +   KP + T+S +    ++     E   LL +  
Sbjct: 894 LNGWSKLRNGIEVRILLKDMKELGFKPSKGTISSMSRAFSRPGMTGEARRLLKTLF 949



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 108/418 (25%), Positives = 170/418 (40%), Gaps = 57/418 (13%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GLL D V+   LM+   K   +  AF     ++ K  SPD V     I  LC  GKF+EA
Sbjct: 532 GLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEA 591

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
                +         + P+   Y ++I   C++G  +K   L  +MK   I P+   Y +
Sbjct: 592 KSFLKEMR----NTGLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTT 647

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           L+      V   +A G    A  L  E  +       + H  VL  CS   S   DV++ 
Sbjct: 648 LV------VGLLEA-GVVKKAKFLLNEMASAGFAPTSLTHQRVLQACS--GSRRPDVIL- 697

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
              E+   M   G+  D+ VY++L+   C  G   +A  +   + + G  PDT ++N LI
Sbjct: 698 ---EIHELMMGAGLHADITVYNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNALI 754

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
             + K   ++ A ++Y +M+  G+ P+                      +  FN L+ GL
Sbjct: 755 LGHCKSSHLDNAFAIYAQMLHQGLSPN----------------------IATFNTLLGGL 792

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG----------------LCIEGGIEKA 460
             + R+  A  +   + + G EPN +TY +++ G                +  +G I KA
Sbjct: 793 ESAGRIGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKA 852

Query: 461 --YDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
             Y+ L     K     +A EL  +M +R V     T  IL    +K  N  E   LL
Sbjct: 853 STYNSLMSDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGIEVRILL 910



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 129/298 (43%), Gaps = 17/298 (5%)

Query: 74  FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
             N M      P   +   +L A +G +     + + E +   GL  D    N L++  C
Sbjct: 664 LLNEMASAGFAPTSLTHQRVLQACSGSRRPDVILEIHELMMGAGLHADITVYNTLVHVLC 723

Query: 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
                 +A V L  +L +  +PD +T   LI G C       A  ++ + +       + 
Sbjct: 724 CHGMARNATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQML----HQGLS 779

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           PN+  + +++ GL   G + +   +  DMK  G+ P+   Y+ L+  Y         K N
Sbjct: 780 PNIATFNTLLGGLESAGRIGEADTVLSDMKKVGLEPNNLTYDILVTGYA-------KKSN 832

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
              AL L+ E V+     G I  P   +Y S+++   K  ++++AKELF +MK RG++  
Sbjct: 833 KVEALRLYCEMVSK----GFI--PKASTYNSLMSDFAKAGMMNQAKELFSEMKRRGVLHT 886

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
              Y  L++G+  +    + R L   ++  G  P   + +++  ++S+     EA  L
Sbjct: 887 SSTYDILLNGWSKLRNGIEVRILLKDMKELGFKPSKGTISSMSRAFSRPGMTGEARRL 944



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 4/175 (2%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            L++A   +  M+H   +P + +FN+LLG L           +   +  +GL P+ ++ +
Sbjct: 762 HLDNAFAIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVGLEPNNLTYD 821

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           IL+  + K     +A      ++ K F P   T   L+      G   +A  LF++    
Sbjct: 822 ILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLMSDFAKAGMMNQAKELFSEMK-- 879

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
             R  V+     Y  +++G  K     +VR+L  DMK  G  P     +S+ R +
Sbjct: 880 --RRGVLHTSSTYDILLNGWSKLRNGIEVRILLKDMKELGFKPSKGTISSMSRAF 932


>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 123/447 (27%), Positives = 206/447 (46%), Gaps = 31/447 (6%)

Query: 37  SSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGA 96
           S LH  + S   E    L  +  N+      L+ ++ +FN M+     P    FN+LL  
Sbjct: 79  SLLHYVTESETSETKSRLYEVMINAYVQSQSLDSSISYFNEMVDKGFVPGSNCFNNLLTF 138

Query: 97  LAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPD 156
           + G   +  +       + I +  D  S  I++   C+   +  +F  L  +    FSP+
Sbjct: 139 VVGSSSFNQWWRFFNE-SKIKVDLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPN 197

Query: 157 VVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVR 216
           VV    LI G C +G+  +A  LF +   F     ++ N   Y  +I GL K+G   +  
Sbjct: 198 VVIYTTLIDGCCKRGEIEKAKDLFFEMGKF----GLVANEWTYTVLIHGLFKNGIKKQGF 253

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            ++  M+  G++P+ + YN       C +N     G T  A +L +E      E GV C 
Sbjct: 254 EMYEKMQEDGVFPNLYTYN-------CVMNQHCKDGRTKDAFKLFDEMR----ERGVSC- 301

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
            ++++Y ++I  LC+++  ++A ++   MKS GI P+++ Y++LIDG+C +G++  A  L
Sbjct: 302 -NIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSL 360

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSCI 387
              ++S G  P   +YN L++ + K      A  +  EM   G++P         D    
Sbjct: 361 CRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFAR 420

Query: 388 LEAAELFRTLHNTKFELDLT----VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
           ++  E    L +   EL LT     ++ L+ G C   ++  A  LFK +     EPN V 
Sbjct: 421 MDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVI 480

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEK 470
           Y  M+ G C EG   +A  L  +MEEK
Sbjct: 481 YNTMVLGYCKEGSSYRALRLFREMEEK 507



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 143/310 (46%), Gaps = 44/310 (14%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           + E++   G+ P+  + N +MN  CK     DAF     +  +  S ++VT   LI GLC
Sbjct: 255 MYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLC 314

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
            + K  EA+ +  +  +      + PN+I Y ++IDG C  G + K   L  D+K RG+ 
Sbjct: 315 REMKANEANKVMDQMKS----DGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLS 370

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAA----LELHEEFVNGNG--------------- 269
           P    YN L+  +C        KG+TS A     E+ E  +  +                
Sbjct: 371 PSLVTYNILVSGFC-------KKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDN 423

Query: 270 ------------ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
                       ELG+   PDV +Y  +I+  C    +++A  LF  M ++ + P+ V+Y
Sbjct: 424 MEKAIQLRSPMEELGLT--PDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIY 481

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           ++++ GYC  G    A +LF  +E +   P+ +SY  +I    K  K +EA  L  +MI 
Sbjct: 482 NTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMID 541

Query: 378 MGVRPDNSCI 387
            G+ P +S +
Sbjct: 542 TGIDPSDSIL 551



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 130/269 (48%), Gaps = 31/269 (11%)

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           DV S+  +I   C+   ++K+ +L ++++  G  P+VV+Y++LIDG C  G I+ A+ LF
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLF 221

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCIL------ 388
             +   G + +  +Y  LI+   K    ++   +Y +M   GV P+    +C++      
Sbjct: 222 FEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKD 281

Query: 389 ----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
               +A +LF  +       ++  +N L+ GLC+  +   A ++  ++   G  PN++TY
Sbjct: 282 GRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITY 341

Query: 445 TVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAK 486
             +I G C  G + KA  L  D++                   K  +   A +++ +M +
Sbjct: 342 NTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEE 401

Query: 487 RYVKPDEITVSILEELLNKDENCHECMNL 515
           R +KP +IT +IL +   + +N  + + L
Sbjct: 402 RGIKPSKITYTILIDTFARMDNMEKAIQL 430



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 130/299 (43%), Gaps = 19/299 (6%)

Query: 57  LSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           ++++ K G  +  DA   F+ M     +  + ++N+L+G L  +        + +++ + 
Sbjct: 275 MNQHCKDGRTK--DAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSD 332

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ P+ ++ N L++ FC +  +  A      +  +  SP +VT   L+ G C +G  T  
Sbjct: 333 GINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGD-TSG 391

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
           +G   K +       + P+ I Y  +ID   +   + K   L   M+  G+ PD   Y+ 
Sbjct: 392 AGKVVKEME---ERGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSV 448

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI  +C        KG  + A  L +  V    E      P+ + Y +++   CK+    
Sbjct: 449 LIHGFCI-------KGQMNEASRLFKLMVAKKLE------PNKVIYNTMVLGYCKEGSSY 495

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           +A  LF +M+ + + P+V  Y  +I+  C   +  +A  L   +   G  P  S  N +
Sbjct: 496 RALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDTGIDPSDSILNLI 554



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 85/242 (35%), Gaps = 66/242 (27%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E++ N+A    + M      P + ++N+L+    G       + L   L + GL P  V+
Sbjct: 316 EMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVT 375

Query: 125 LNILMNCFCKMIGVS-------------------------DAFVALGRILRKV------- 152
            NIL++ FCK    S                         D F  +  + + +       
Sbjct: 376 YNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPME 435

Query: 153 ---FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI---------------- 193
               +PDV T   LI G C++G+  EAS LF   VA    PN +                
Sbjct: 436 ELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSY 495

Query: 194 ---------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
                          PNV  Y  +I+ LCK+    +   L   M   GI P   + N + 
Sbjct: 496 RALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDTGIDPSDSILNLIS 555

Query: 239 RV 240
           R 
Sbjct: 556 RA 557


>gi|115447573|ref|NP_001047566.1| Os02g0644600 [Oryza sativa Japonica Group]
 gi|49387609|dbj|BAD25805.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|49388661|dbj|BAD25796.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113537097|dbj|BAF09480.1| Os02g0644600 [Oryza sativa Japonica Group]
          Length = 526

 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 125/435 (28%), Positives = 204/435 (46%), Gaps = 42/435 (9%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +N+A+   N M     TP    +  L+     K    N   + E +    + PD V+ NI
Sbjct: 121 MNEAVKLLNEMKCGGLTPDKIHYTCLINGYCLKGEMQNAQQVFEEMLKANIEPDIVTYNI 180

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L + FCK   V + F  L R+      P+ +T G  I G C  G  +EA  LF       
Sbjct: 181 LASGFCKSGLVMEVFDLLDRMADHGLEPNSLTYGIAIVGFCRGGNLSEAEVLFNVV---- 236

Query: 188 CRPNVIPNV-ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                I ++ + Y+S++ G    G+ +   +LF+ +  +G   D F  + LI   C   N
Sbjct: 237 -EEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLINDLCRVGN 295

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            + A       LE +           V+  PDV+SY  +I+  C++  +DKA   F DM 
Sbjct: 296 VQGASNVCKIMLEHN-----------VV--PDVISYSKLISIYCQNGDMDKAHLWFHDMV 342

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            RG+  DV+VY+ L++GYC  GR+ +A +LFV + + G  PD  +Y  L++ + K    +
Sbjct: 343 QRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQ 402

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
               +  E  S  +R +++      +L  ++ + + E D+  +  L+DG CK+  L  A 
Sbjct: 403 GWEGIAKERRSFLLRANHN------KLLSSMKDMQIEPDVPCYTVLIDGKCKAEYLVEAR 456

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAK 486
           ELF ++ + G  P+   YT +I G C +G I KA DLL +M +K                
Sbjct: 457 ELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDK---------------- 500

Query: 487 RYVKPDEITVSILEE 501
             ++PDE+T S+L +
Sbjct: 501 -GIEPDELTFSVLNQ 514



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 167/401 (41%), Gaps = 80/401 (19%)

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           ++ N++M+  CK + + +A   L    R+  +PDV     LI+  C  G   +A   +  
Sbjct: 1   MAYNMVMDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIQSYCKMGNLIKAVDHYEA 60

Query: 183 FVAFDCRPN-------------------VIP------------NVICYASIIDGLCKDGF 211
            V+     N                   VI             + + Y   +D  CK+G 
Sbjct: 61  MVSHGIETNCHIVSYLLQCFRKLGMTSEVIAYFLKFKDSGLHLDKVIYNIAMDTYCKNGN 120

Query: 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGEL 271
           +N+   L  +MK  G+ PD   Y  LI  YC        KG    A ++ EE +  N E 
Sbjct: 121 MNEAVKLLNEMKCGGLTPDKIHYTCLINGYC-------LKGEMQNAQQVFEEMLKANIEP 173

Query: 272 GVICH-----------------------------PDVLSYCSIINSLCKDVLVDKAKELF 302
            ++ +                             P+ L+Y   I   C+   + +A+ LF
Sbjct: 174 DIVTYNILASGFCKSGLVMEVFDLLDRMADHGLEPNSLTYGIAIVGFCRGGNLSEAEVLF 233

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
             ++ +GI    V+YSS++ GY L G  D A  LFV +  +G + D  S + LIN   ++
Sbjct: 234 NVVEEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLINDLCRV 293

Query: 363 EKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVF 409
             V+ A ++   M+   V PD             N  + +A   F  +      +D+ V+
Sbjct: 294 GNVQGASNVCKIMLEHNVVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQRGLSIDVIVY 353

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
             L++G CK+ RL+ A +LF ++   G +P+V+ YTV++ G
Sbjct: 354 TILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDG 394



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 126/274 (45%), Gaps = 35/274 (12%)

Query: 197 ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSA 256
           + Y  ++DGLCK+  +++   L  +   +G  PD + Y+ LI+ YC         GN   
Sbjct: 1   MAYNMVMDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIQSYC-------KMGNLIK 53

Query: 257 ALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV 316
           A++ +E  V+   E    CH  ++SY  ++    K  +  +    FL  K  G+  D V+
Sbjct: 54  AVDHYEAMVSHGIETN--CH--IVSY--LLQCFRKLGMTSEVIAYFLKFKDSGLHLDKVI 107

Query: 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
           Y+  +D YC  G +++A KL   ++  G  PD   Y  LIN Y    +++ A  ++ EM+
Sbjct: 108 YNIAMDTYCKNGNMNEAVKLLNEMKCGGLTPDKIHYTCLINGYCLKGEMQNAQQVFEEML 167

Query: 377 SMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
              + P                      D+  +N L  G CKS  +   ++L  ++  +G
Sbjct: 168 KANIEP----------------------DIVTYNILASGFCKSGLVMEVFDLLDRMADHG 205

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            EPN +TY + I G C  G + +A  L   +EEK
Sbjct: 206 LEPNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEK 239



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 120/260 (46%), Gaps = 11/260 (4%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           R+   G L D  S + L+N  C++  V  A      +L     PDV++   LI   C  G
Sbjct: 270 RVARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHNVVPDVISYSKLISIYCQNG 329

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
              +A   F   V    +  +  +VI Y  +++G CK G + +   LF+ M   GI PD 
Sbjct: 330 DMDKAHLWFHDMV----QRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDV 385

Query: 232 FVYNSLIRVY---CCAVNWED-AKGNTSAALEL-HEEFVNGNGELGVICHPDVLSYCSII 286
             Y  L+  +        WE  AK   S  L   H + ++   ++ +   PDV  Y  +I
Sbjct: 386 IAYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQI--EPDVPCYTVLI 443

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           +  CK   + +A+ELF +M  +G+ PD   Y++LI+GYC  G I  A  L   +  +G  
Sbjct: 444 DGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIE 503

Query: 347 PDTSSYNTLINSYSKIEKVE 366
           PD  +++ L  S  +  K++
Sbjct: 504 PDELTFSVLNQSSLRSRKIQ 523


>gi|449444522|ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 783

 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 113/402 (28%), Positives = 193/402 (48%), Gaps = 26/402 (6%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
            DAL  F+ M      P    ++ +L  L   K   +   L  ++   G   D ++ N+L
Sbjct: 215 QDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVL 274

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           +N FCK   + DAF  L  + +      V+  GCLI GL    ++ EA   + K +    
Sbjct: 275 LNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKML---- 330

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
           R N+ P+V+ Y  +I GL ++G V +   L  +M  RG+ PD   YN+LI+ + C + + 
Sbjct: 331 RENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGF-CDMGYL 389

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
           D   +    +  H+            C P+  +Y  +I  +CK+ L++KA+ +F +M+  
Sbjct: 390 DEAESLRLEISKHD------------CFPNNHTYSILICGMCKNGLINKAQHIFKEMEKL 437

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G +P VV ++SLI+G C   R+++AR LF  +E    +   S +  L     K+  +   
Sbjct: 438 GCLPSVVTFNSLINGLCKANRLEEARLLFYQME---IVRKPSLFLRLSQGTDKVFDIASL 494

Query: 369 LSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
             +   +   G+      IL+A +L   L ++    D+  +N L++G CK   +  A++L
Sbjct: 495 QVMMERLCESGM------ILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKL 548

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           FK++   G  P+ VTY  +I GL   G  E A ++   M +K
Sbjct: 549 FKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKK 590



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 110/422 (26%), Positives = 184/422 (43%), Gaps = 43/422 (10%)

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           F  M      P + +FN +L  L  K+ ++  + +  ++    L PD V+  IL++  CK
Sbjct: 151 FGLMRDFDCKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCK 210

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
                DA V    +  +   P+ +    ++ GLC   K  +A  LF+K  A  C  ++I 
Sbjct: 211 TCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLIT 270

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
               Y  +++G CK G+++    L   +   G       Y  LI     A  +E+A    
Sbjct: 271 ----YNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAH--- 323

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
                 +++ +  N        PDV+ Y  +I  L ++  V +A  L  +M  RG+ PD 
Sbjct: 324 ----MWYQKMLREN------IKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDT 373

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           + Y++LI G+C MG +D+A  L + I    C P+  +Y+ LI    K   + +A  ++ E
Sbjct: 374 ICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKE 433

Query: 375 MISMGVRPD----NSCI--------LEAAEL--------------FRTLHNTKFELDLTV 408
           M  +G  P     NS I        LE A L               R    T    D+  
Sbjct: 434 MEKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIAS 493

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
              +++ LC+S  +  A++L  +L   G  P++ TY ++I G C  G I  A+ L  +M+
Sbjct: 494 LQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQ 553

Query: 469 EK 470
            K
Sbjct: 554 LK 555



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 174/394 (44%), Gaps = 55/394 (13%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD +   I++    +   V++A   LG +  +   PD +    LI+G C  G   EA  L
Sbjct: 336 PDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESL 395

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             +    DC     PN   Y+ +I G+CK+G +NK + +F +M+  G  P    +NSLI 
Sbjct: 396 RLEISKHDC----FPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLIN 451

Query: 240 VYCCAVNWEDAK--------------------GNTS----AALELHEEFVNGNGEL---- 271
             C A   E+A+                    G       A+L++  E +  +G +    
Sbjct: 452 GLCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAY 511

Query: 272 ---------GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
                    GV+  PD+ +Y  +IN  CK   ++ A +LF +M+ +G +PD V Y +LID
Sbjct: 512 KLLMQLVDSGVL--PDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLID 569

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS----- 377
           G    GR +DA ++F  +  +GC+P++S+Y T++    +   +  ALS++ + +      
Sbjct: 570 GLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSVWMKYLRDFRGW 629

Query: 378 -------MGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
                  +    DN  +  A      +       DL  +   + GL ++ R   A+ +F 
Sbjct: 630 EDEKVRVVAESFDNEELQTAIRRLLEMDIKSKNFDLAPYTIFLIGLVQAKRDCEAFAIFS 689

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            L  +    +  +  ++I  LC+   ++ A D+ 
Sbjct: 690 VLKDFKMNISSASCVMLIGRLCMVENLDMAMDVF 723



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 128/272 (47%), Gaps = 35/272 (12%)

Query: 199 YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL 258
           ++ +I+   + G   K    F  M+     PD F +N ++            K     AL
Sbjct: 131 FSVLIEAYSEAGMDEKAVESFGLMRDFDCKPDLFAFNLILHFLV-------RKEAFLLAL 183

Query: 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS 318
            ++ + +  N       +PDV++Y  +I+ LCK      A  LF +M  RGI+P+ ++YS
Sbjct: 184 AVYNQMLKCN------LNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYS 237

Query: 319 SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
            ++ G C   +I DA++LF  + + GC  D  +YN L+N + K   +++A +        
Sbjct: 238 IVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFT-------- 289

Query: 379 GVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
                         L + L      L +  + CL++GL ++ R   A   ++K+ R   +
Sbjct: 290 --------------LLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIK 335

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           P+V+ YT+MI GL  EG + +A  LL +M E+
Sbjct: 336 PDVMLYTIMIRGLSQEGRVTEALTLLGEMTER 367



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 117/269 (43%), Gaps = 31/269 (11%)

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           II  L K+   +   ++  ++K+  I      +S LI+ Y   G  + A + F  +    
Sbjct: 99  IIGKLIKENAFELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFGLMRDFD 158

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------NSC-ILEAA 391
           C PD  ++N +++   + E    AL++Y +M+   + PD             +C   +A 
Sbjct: 159 CKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDAL 218

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
            LF  + +     +  +++ ++ GLC++ ++  A  LF K+   G   +++TY V++ G 
Sbjct: 219 VLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGF 278

Query: 452 CIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDE 493
           C  G ++ A+ LL  + +                  + R   +A     KM +  +KPD 
Sbjct: 279 CKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDV 338

Query: 494 ITVSILEELLNKDENCHECMNLLPSFLSR 522
           +  +I+   L+++    E + LL     R
Sbjct: 339 MLYTIMIRGLSQEGRVTEALTLLGEMTER 367


>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
 gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
          Length = 564

 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 132/454 (29%), Positives = 209/454 (46%), Gaps = 42/454 (9%)

Query: 36  PSSLHSNSVSTVEEKTKLLKYLSE-NSKSGEVELNDALCFFNYMIHMQPTPFMPS-FNSL 93
           PS LH  + +     T  L Y S  N+      L+ AL FFN M+  +   F P+ FNSL
Sbjct: 76  PSLLHHLTQNQNPSMTTALLYESIINAHLKSQLLDKALIFFNEMVD-KGLVFRPNIFNSL 134

Query: 94  LGALAG----KKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149
           LG+L      +K ++ F  L ER+       D  S  I++   C+   +  +F  LG + 
Sbjct: 135 LGSLVRSNCFEKAWLFFNELKERVKF-----DVYSFGIMIKGCCENGNLDKSFQLLGLLQ 189

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD 209
               SP+VV    LI G C  G    A   F K         ++ N   +  +I+GL K 
Sbjct: 190 DMGLSPNVVIYTTLIDGCCKNGDIERARLFFDKM----GEMGLVANQYTFTVLINGLFKK 245

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
           G       LF  MK  G++P+ + YN L+  YC        +G    A +L +E      
Sbjct: 246 GLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYC-------GEGKICRAFDLFDEM----R 294

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
           E GV    +V++Y ++I  +C++  V +A++L   MK   + P+++ Y++LI G+C +G 
Sbjct: 295 ERGV--EANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGN 352

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN-SCIL 388
           +D A  L   ++S G  P   +YN LI  YSK    +    L  EM   G+ P   +C +
Sbjct: 353 LDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTV 412

Query: 389 ------------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
                       +A +++ ++       D+ V+  L+ GLC    ++ + +LF+ +    
Sbjct: 413 LIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMH 472

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            EP+ V Y  MI G C E    +A  LL +ME K
Sbjct: 473 VEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAK 506



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 160/350 (45%), Gaps = 32/350 (9%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G++E   A  FF+ M  M       +F  L+  L  K    +   L E++   GL P+
Sbjct: 209 KNGDIE--RARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPN 266

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             + N LMN +C    +  AF     +  +    +VVT   LI G+C + +  EA  L  
Sbjct: 267 LYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLVD 326

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           +      +  V PN+I Y ++I G C  G ++K   L   +K  G+ P    YN LI  Y
Sbjct: 327 QMK----KAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGY 382

Query: 242 CCAVNWE---------DAKGNT----------SAALELHE-----EFVNGNGELGVICHP 277
             A NW+         + +G +           A + L E     +  +   + G++  P
Sbjct: 383 SKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLV--P 440

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           DV  Y  +I+ LC    + ++ +LF  M    + P  V+Y+++I GYC       A +L 
Sbjct: 441 DVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLL 500

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
             +E++G +P+ +SY+++I    K  K EEA  L  +MI + ++P  S +
Sbjct: 501 REMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVLLDKMIELQLKPSASIL 550


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 123/479 (25%), Positives = 213/479 (44%), Gaps = 84/479 (17%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           +AL  +  M+     P + +F++L+ A   ++     + L E + ++GL P+  +  I +
Sbjct: 212 EALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICI 271

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
               +   + +A+  + R+      PDVVT   LI  LC   K  +A  LFTK  +   +
Sbjct: 272 RVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHK 331

Query: 190 PNVI-------------------------------PNVICYASIIDGLCKDGFVNKVRVL 218
           P+ +                               P+V+ +  +++ LCK G +N+   L
Sbjct: 332 PDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDL 391

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD 278
              M+ +G+ P+   YN+LI     A   +DA       L+L     +    LGV   P 
Sbjct: 392 LDTMRKQGVLPNLHTYNTLISGLLRANRLDDA-------LDLFSNMES----LGV--EPT 438

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
             +Y  +I+   K     KA E F  MK+RGI P++V  ++ +     MGR+ +A+ +F 
Sbjct: 439 AYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFN 498

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398
            ++S G  PD+ +YN ++  YSK+ +V+EA+ L  EM  +   PD               
Sbjct: 499 ELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPD--------------- 543

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
                  + V N L+D L K+ R+  AW++F ++      P VVTY +++ GL  EG I+
Sbjct: 544 -------VIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQ 596

Query: 459 KAYDLLPDME-----------EKIRECL-------KAIELLHKMAKRYVKPDEITVSIL 499
           KA  L   M              + +CL        A+++ +KM     +PD +T + +
Sbjct: 597 KAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTI 655



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 125/456 (27%), Positives = 199/456 (43%), Gaps = 68/456 (14%)

Query: 62   KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
            K+ EV+L  AL  F  M  M   P + +FN+++     +    N I L  ++  + L PD
Sbjct: 626  KNDEVDL--ALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQMKKL-LRPD 682

Query: 122  FVSLNILMNCFCKMIGVSDAFV--------------------ALGRILRKVFSPDVVTLG 161
             V+L  L+    K   + DAF                      +G IL +  +   +  G
Sbjct: 683  HVTLCTLLPGVIKSGQIEDAFRITEDFFYQVGSNIDRSFWEDVMGGILTEAGTEKAILFG 742

Query: 162  --------C--------LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDG 205
                    C        +I+ LC   K + A  +F KF        V P +  Y  +IDG
Sbjct: 743  ERLVCRAICKDDSVLIPIIKVLCKHKKTSVARNVFVKFTK---ELGVKPTLKVYNLLIDG 799

Query: 206  LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
              +   V     LF +MK  G  PD F YNSLI  +          G  +   +L++E +
Sbjct: 800  FLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAH-------GKSGKINELFDLYDEML 852

Query: 266  NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
                     C P+ ++Y  +I++L K   +DKA +L+ ++ S    P    +  LIDG  
Sbjct: 853  TRG------CKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLL 906

Query: 326  LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
              GR+DDA ++F  +   GC P+++ YN L+N Y K+  V+ A   +  M+  G+RPD  
Sbjct: 907  KSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLK 966

Query: 386  ---------CIL----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
                     CI     +A   F  L     + DL  +N +++GL +S R   A  LF ++
Sbjct: 967  SYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEM 1026

Query: 433  PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
               G  P++ TY  +I  L I G IE+A  +  +++
Sbjct: 1027 QNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQ 1062



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 139/535 (25%), Positives = 230/535 (42%), Gaps = 79/535 (14%)

Query: 42   NSVSTVEEKTKLLKYLSE----------NS------KSGEVELNDALCFFNYMIHMQPTP 85
            + V  V+E  KLL  +S+          NS      K+G VE  +A   F  M  M   P
Sbjct: 520  SKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVE--EAWQMFCRMEEMNLAP 577

Query: 86   FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVAL 145
             + ++N LL  L  +      + L E +N  G  P+ ++ N L++C CK   V  A    
Sbjct: 578  TVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMF 637

Query: 146  GRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDG 205
             ++      PDV+T   +I G   Q +   A  LF +      +  + P+ +   +++ G
Sbjct: 638  YKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQM-----KKLLRPDHVTLCTLLPG 692

Query: 206  LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG------NTSAALE 259
            + K G +     +  D      Y    V +++ R +     WED  G       T  A+ 
Sbjct: 693  VIKSGQIEDAFRITEDF----FYQ---VGSNIDRSF-----WEDVMGGILTEAGTEKAIL 740

Query: 260  LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM-KSRGIIPDVVVYS 318
              E  V        IC  D +    II  LCK      A+ +F+   K  G+ P + VY+
Sbjct: 741  FGERLV-----CRAICKDDSV-LIPIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYN 794

Query: 319  SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
             LIDG+  +  ++ A  LF  ++S GC PDT +YN+LI+++ K  K+ E   LY EM++ 
Sbjct: 795  LLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTR 854

Query: 379  GVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
            G +P+             ++ + +A +L+  L +  F      F  L+DGL KS RL  A
Sbjct: 855  GCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDA 914

Query: 426  WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM-EEKIRECLK-------- 476
             E+F  +  YG  PN   Y +++ G    G ++ A +    M +E IR  LK        
Sbjct: 915  HEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDI 974

Query: 477  ---------AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
                     A+    K+ +  + PD +  +++   L + +   E ++L     +R
Sbjct: 975  LCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNR 1029



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 104/431 (24%), Positives = 190/431 (44%), Gaps = 67/431 (15%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L+DA+C F  M      P   ++ +LL   +   +      +   +   G  PD V+  
Sbjct: 314 KLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFT 373

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           IL+N  CK   +++AF  L  + ++   P++ T   LI GL    +  +A  LF+   + 
Sbjct: 374 ILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESL 433

Query: 187 DCRP-------------------------------NVIPNVICYASIIDGLCKDGFVNKV 215
              P                                + PN++   + +  L + G + + 
Sbjct: 434 GVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEA 493

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
           + +F ++K  G+ PD+  YN +++ Y          G    A++L  E         V C
Sbjct: 494 KAMFNELKSSGLAPDSVTYNMMMKCYSKV-------GQVDEAIKLLSEMSK------VQC 540

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
            PDV+   S+I++L K   V++A ++F  M+   + P VV Y+ L+ G    G+I  A +
Sbjct: 541 EPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQ 600

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395
           LF S+   GC P+T ++NTL++   K ++V+ AL ++ +M +M  RP             
Sbjct: 601 LFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRP------------- 647

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
                    D+  FN ++ G  K  ++++A  LF ++ +    P+ VT   ++ G+   G
Sbjct: 648 ---------DVLTFNTIIHGFIKQNQIKNAIWLFHQMKKL-LRPDHVTLCTLLPGVIKSG 697

Query: 456 GIEKAYDLLPD 466
            IE A+ +  D
Sbjct: 698 QIEDAFRITED 708



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 108/445 (24%), Positives = 192/445 (43%), Gaps = 76/445 (17%)

Query: 111 ERLNTIGLLPDFVSLN-----ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165
           E++   G + +  S N     +L + FCK     +A     R++ +   P + T   L+ 
Sbjct: 183 EKMREAGFVLNAYSYNGLIHFLLQSGFCK-----EALEVYRRMVSEGLKPSLKTFSALMV 237

Query: 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225
               +       GL  +  +   RPN+    IC    I  L +DG +++   +   M   
Sbjct: 238 ASGKRRNIKTVMGLLEEMESMGLRPNIYTYTIC----IRVLGRDGKIDEAYRIMKRMDDD 293

Query: 226 GIYPDAFVYNSLIRVYCCAVNWEDA-----KGNTSAALELHEEFVNGNGELGVICHPDVL 280
           G  PD   Y  LI   C A   +DA     K  +S+    H+              PD +
Sbjct: 294 GCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSS----HK--------------PDKV 335

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
           +Y ++++       +DK ++++ +M++ G  PDVV ++ L++  C  GRI++A  L  ++
Sbjct: 336 TYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTM 395

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL------------ 388
             +G +P+  +YNTLI+   +  ++++AL L+  M S+GV P     +            
Sbjct: 396 RKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHP 455

Query: 389 -EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
            +A E F  +       ++   N  +  L +  RL  A  +F +L   G  P+ VTY +M
Sbjct: 456 GKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMM 515

Query: 448 ICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDE 507
           +          K Y        K+ +  +AI+LL +M+K   +PD I ++ L + L K  
Sbjct: 516 M----------KCY-------SKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAG 558

Query: 508 NCHEC---------MNLLPSFLSRN 523
              E          MNL P+ ++ N
Sbjct: 559 RVEEAWQMFCRMEEMNLAPTVVTYN 583



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 148/337 (43%), Gaps = 39/337 (11%)

Query: 109  LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
            L E + + G  PD  + N L++   K   +++ F     +L +   P+ +T   +I  L 
Sbjct: 812  LFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLV 871

Query: 169  MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
               +  +A  L+   V+ D  P        +  +IDGL K G ++    +F  M   G  
Sbjct: 872  KSNRLDKAMDLYYNLVSGDFSPTPC----TFGPLIDGLLKSGRLDDAHEMFDGMVHYGCR 927

Query: 229  PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
            P++ +YN L       VN     G+   A E  +  V           PD+ SY  +++ 
Sbjct: 928  PNSAIYNIL-------VNGYGKLGHVDTACEFFKRMVKEG------IRPDLKSYTILVDI 974

Query: 289  LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
            LC    VD A   F  +K  G+ PD+V Y+ +I+G     R ++A  LF  +++ G +PD
Sbjct: 975  LCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPD 1034

Query: 349  TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTV 408
              +YN+LI +   +  +EEA  +Y E+  +G++P                      ++  
Sbjct: 1035 LYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKP----------------------NVFT 1072

Query: 409  FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
            +N L+ G   S     A+ ++KK+   G +PN  T+ 
Sbjct: 1073 YNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFA 1109



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 144/327 (44%), Gaps = 43/327 (13%)

Query: 64   GEVELNDALCFFNYMIHMQPTPFMP---SFNSLLGALAGKKYYVN-FICLSERLNTIGLL 119
            G +E+++    +N    M+     P   ++NSL+ A  GK   +N    L + + T G  
Sbjct: 799  GFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDA-HGKSGKINELFDLYDEMLTRGCK 857

Query: 120  PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
            P+ ++ N++++   K   +  A      ++   FSP   T G LI GL   G+  +A  +
Sbjct: 858  PNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEM 917

Query: 180  FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
            F   V + CRPN       Y  +++G  K G V+     F  M   GI PD   Y  L+ 
Sbjct: 918  FDGMVHYGCRPNSA----IYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVD 973

Query: 240  VYCCAVNWEDA----------------------------KGNTSAALELHEEFVNGNGEL 271
            + C A   +DA                               T  AL L  E  N     
Sbjct: 974  ILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQN----R 1029

Query: 272  GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
            G++  PD+ +Y S+I +L    ++++A +++ +++  G+ P+V  Y++LI GY L G  +
Sbjct: 1030 GIV--PDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSE 1087

Query: 332  DARKLFVSIESEGCIPDTSSYNTLINS 358
             A  ++  +   GC P+T ++  L N 
Sbjct: 1088 LAYGIYKKMMVGGCDPNTGTFAQLPNQ 1114



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 114/277 (41%), Gaps = 35/277 (12%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKE---LFLDMKSRGIIP-DVVVYSSLIDGYCLMGRIDD 332
           P+V+      N + + + V +  E      D+  R II  +V  Y  +     + G +  
Sbjct: 118 PNVVHTTETCNHMLEILRVHRRVEDMAFVFDLMQRQIIRRNVDTYLIIFKSLFIRGGLRQ 177

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCILE 389
           A      +   G + +  SYN LI+   +    +EAL +Y  M+S G++P     S ++ 
Sbjct: 178 APSALEKMREAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMV 237

Query: 390 AA----------ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
           A+           L   + +     ++  +   +  L +  ++  A+ + K++   G  P
Sbjct: 238 ASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGP 297

Query: 440 NVVTYTVMICGLCIEGGIEKAYDLLPDME---------------EKIREC--LKAIE-LL 481
           +VVTYTV+I  LC    ++ A  L   M+               +K  +C  L  +E + 
Sbjct: 298 DVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIW 357

Query: 482 HKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPS 518
            +M      PD +T +IL   L K    +E  +LL +
Sbjct: 358 TEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDT 394


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/455 (25%), Positives = 201/455 (44%), Gaps = 77/455 (16%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
            ++ + GL+P  V+ N  M+  CK     DA      +  K   PD+V+   L+ G   +
Sbjct: 358 RKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATE 417

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G+F + + LF           ++ N  C+  +I    K G +++  ++F +M+G+G+ PD
Sbjct: 418 GRFADMNNLFHSMA----DKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPD 473

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALEL--------HEEFVNG---NGEL-------- 271
              Y++LI  +C      DA    S  + +        +   ++G   +G+L        
Sbjct: 474 VVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVS 533

Query: 272 ----GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
                 I  P+++ + SII+SLC +  V  A ++F  +   G  P +V ++SLIDGYCL+
Sbjct: 534 EMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLV 593

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---- 383
           G+++ A  +  ++ S G  PD  +YNTL++ Y K  K+++ L L+ EM+   V+P     
Sbjct: 594 GKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTY 653

Query: 384 --------------------------------------------NSCILEAAELFRTLHN 399
                                                       N    EA  LF  L  
Sbjct: 654 SIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGA 713

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
              + D+T+ N +++ L K  R   A +LF  +   G  PNV TY VMI  L  EG +E+
Sbjct: 714 MDCKFDITILNTVINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEE 773

Query: 460 AYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEI 494
           A  +   ME+    C  +  LL+ + +  ++  +I
Sbjct: 774 ADTMFSSMEKS--GCAPSSRLLNDIIRMLLQKGDI 806



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 120/476 (25%), Positives = 195/476 (40%), Gaps = 88/476 (18%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFM-PSFNSLLGALAGKKYYV-------------NFI 107
           ++G    +DA   F+ ++  Q TP   P+ N  L ALA     V             N I
Sbjct: 84  RAGTFSTDDAHHLFDELLR-QGTPVHNPALNGFLAALARAPDSVSCSNGPALVLALFNRI 142

Query: 108 CLSERLNTIGLLPDFVSLNILMNCFCKMI--GVSDAFVALGRILRKVFSPDVVTLGCLIR 165
           C  E    +  L    +  ILM+C C+     +  AF A  R+LR       +     ++
Sbjct: 143 CREEAGPRVAPL-SVHTYGILMDCCCRARRPDLGPAFFA--RLLRAGLRTRTIEANTFLK 199

Query: 166 GLCMQGKFTEASG-LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224
            LC   +  EA   L  +     C    +PN I Y ++I  LC D    +   +   M  
Sbjct: 200 CLCHAKRTDEAVDVLLHRMSDLGC----VPNAISYNTVIKSLCGDSRSQEALDMVQRMAK 255

Query: 225 RG--IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
            G    PD   +N++I  +         +G  S A  L  E V    E      PDV++Y
Sbjct: 256 EGGRCSPDVVSFNTVIHGFF-------KQGEVSKACNLINEMVQKGVE------PDVVTY 302

Query: 283 CSIINSLCKDVLVDKAK-----------------------------------ELFLDMKS 307
            SI+++LCK   +DKA+                                   ++F  M S
Sbjct: 303 NSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTS 362

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           +G+IP +V ++S +   C  GR  DA ++F  + ++G +PD  SY+ L++ Y+   +  +
Sbjct: 363 KGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFAD 422

Query: 368 ALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDLTVFNCLVD 414
             +L+  M   G+  +  C             + EA  +F  +       D+  ++ L+ 
Sbjct: 423 MNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLIS 482

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
             C+  RL  A E F ++   G EPN V Y  +I G C+ G + KA +L+ +M  K
Sbjct: 483 AFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSK 538



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 95/406 (23%), Positives = 165/406 (40%), Gaps = 73/406 (17%)

Query: 90  FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149
           FN L+ A A +      + +   +   G+ PD V+ + L++ FC+M  ++DA     +++
Sbjct: 442 FNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMI 501

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD 209
                P+ V    LI G CM G   +A  L ++ ++   +    PN++ ++SII  LC +
Sbjct: 502 SIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMS---KGIPRPNIVFFSSIIHSLCNE 558

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
           G V     +F  +   G  P    +NSLI  YC     E A G   A + +  E      
Sbjct: 559 GRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIE------ 612

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
                  PDV++Y ++++  CK   +D    LF +M  + + P  V YS ++DG    GR
Sbjct: 613 -------PDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGR 665

Query: 330 IDDARKLFVSIESEGCIPDTSSY-----------------------------------NT 354
              A+K+F  +   G   D  +Y                                   NT
Sbjct: 666 TSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNT 725

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           +IN+  K+ + EEA  L+  + + G+ P                      +++ +  ++ 
Sbjct: 726 VINALYKVRRREEANDLFAAISTSGLVP----------------------NVSTYGVMIH 763

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
            L K   +  A  +F  + + G  P+      +I  L  +G I KA
Sbjct: 764 NLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKGDIVKA 809


>gi|297800058|ref|XP_002867913.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313749|gb|EFH44172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 724

 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 119/435 (27%), Positives = 197/435 (45%), Gaps = 48/435 (11%)

Query: 111 ERLNTIGLLPDFVSLNIL-MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCM 169
           + ++  G+ PD  S  ++ + CF +   + +A   L  ++++ F PD  T   ++  LC 
Sbjct: 229 DEMSVRGVCPDSSSFKLMVIGCF-RDGKIQEADRWLSGMIQRGFIPDNATCTLILSALCE 287

Query: 170 QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYP 229
            G    A   F K +    +PN+I     + S+IDGLCK G + +   +  +M   G  P
Sbjct: 288 NGLVNRAIWYFRKMIDLGFKPNLIN----FTSLIDGLCKKGSIKQAFEMLEEMVRNGWKP 343

Query: 230 DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSL 289
           + + + +LI   C        +G T  A  L  + V  +     I  P+V +Y S+I   
Sbjct: 344 NVYTHTALIDGLC-------KRGWTEKAFRLFLKLVRSD-----IYKPNVHTYTSMIGGY 391

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
           CK+  +++A+ LF  MK +G+ P+V  Y++LI+G+C  G  D A +L   ++ EG  P+ 
Sbjct: 392 CKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNI 451

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRT 396
            +YN +I+S  K  +  EA  L  +  S G+  D              S I +A   F  
Sbjct: 452 YTYNAVIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQSDIKQALAFFCR 511

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           ++ T FE D+ + N L+   C+  +++ +  LF+ +   G  P   TYT MI G C EG 
Sbjct: 512 MNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLVPTKETYTSMISGYCKEGD 571

Query: 457 IEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
               +DL             A++  H M +    PD  T   L   L K     E   L 
Sbjct: 572 ----FDL-------------ALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLY 614

Query: 517 PSFLSRNQEESKLTR 531
            + + R     ++TR
Sbjct: 615 EAMIDRGLSPPEVTR 629



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 182/409 (44%), Gaps = 40/409 (9%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           + G+++  D   + + MI     P   +   +L AL         I    ++  +G  P+
Sbjct: 252 RDGKIQEADR--WLSGMIQRGFIPDNATCTLILSALCENGLVNRAIWYFRKMIDLGFKPN 309

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            ++   L++  CK   +  AF  L  ++R  + P+V T   LI GLC +G   +A  LF 
Sbjct: 310 LINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFL 369

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           K V  D      PNV  Y S+I G CK+  +N+  +LF  MK +G++P+   Y +LI  +
Sbjct: 370 KLVRSDIYK---PNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGH 426

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C A N++ A            E +N   + G    P++ +Y ++I+SLCK     +A EL
Sbjct: 427 CKAGNFDRAY-----------ELMNLMDDEGF--RPNIYTYNAVIDSLCKKSRAPEAYEL 473

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
                S G+  D V Y+ LI   C    I  A   F  +   G   D    N LI ++ +
Sbjct: 474 LNKAFSCGLEADGVTYTILIQEQCKQSDIKQALAFFCRMNKTGFEADMRLNNILIAAFCR 533

Query: 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
            +K++E+  L+  ++S+G+ P                          +  ++ G CK   
Sbjct: 534 QKKMKESERLFQLVVSLGLVPTKE----------------------TYTSMISGYCKEGD 571

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
              A + F  + R+G  P+  TY  +I GLC +  +++A  L   M ++
Sbjct: 572 FDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDR 620



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 149/339 (43%), Gaps = 44/339 (12%)

Query: 160 LGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLF 219
           + C++R     G+  EA G+            + P+ I    +++   + G ++    +F
Sbjct: 173 MRCMLRNFSEIGRLNEAVGMVMDMQ----NQGLSPSSITMNCVLEIAIESGLIDYAENVF 228

Query: 220 LDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGE----LGVIC 275
            +M  RG+ PD+  +   + V  C  + +  + +   +  +   F+  N      L  +C
Sbjct: 229 DEMSVRGVCPDSSSFK--LMVIGCFRDGKIQEADRWLSGMIQRGFIPDNATCTLILSALC 286

Query: 276 H--------------------PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV 315
                                P+++++ S+I+ LCK   + +A E+  +M   G  P+V 
Sbjct: 287 ENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVY 346

Query: 316 VYSSLIDGYCLMGRIDDARKLFVS-IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
            +++LIDG C  G  + A +LF+  + S+   P+  +Y ++I  Y K +K+  A  L+  
Sbjct: 347 THTALIDGLCKRGWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNRAEMLFSR 406

Query: 375 MISMGVRPDNSCIL-------------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
           M   G+ P+ +                 A EL   + +  F  ++  +N ++D LCK  R
Sbjct: 407 MKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIYTYNAVIDSLCKKSR 466

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
              A+EL  K    G E + VTYT++I   C +  I++A
Sbjct: 467 APEAYELLNKAFSCGLEADGVTYTILIQEQCKQSDIKQA 505



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 115/277 (41%), Gaps = 17/277 (6%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + ++ S++G    +        L  R+   GL P+  +   L+N  CK      A+  
Sbjct: 379 PNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYEL 438

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           +  +  + F P++ T   +I  LC + +  EA  L  K  AF C   +  + + Y  +I 
Sbjct: 439 MNLMDDEGFRPNIYTYNAVIDSLCKKSRAPEAYELLNK--AFSC--GLEADGVTYTILIQ 494

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
             CK   + +    F  M   G   D  + N LI  +C               ++  E  
Sbjct: 495 EQCKQSDIKQALAFFCRMNKTGFEADMRLNNILIAAFC-----------RQKKMKESERL 543

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
                 LG++  P   +Y S+I+  CK+   D A + F +MK  G +PD   Y SLI G 
Sbjct: 544 FQLVVSLGLV--PTKETYTSMISGYCKEGDFDLALKYFHNMKRHGCVPDSFTYGSLISGL 601

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           C    +D+A KL+ ++   G  P   +  TL   Y K
Sbjct: 602 CKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCK 638



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 109/245 (44%), Gaps = 36/245 (14%)

Query: 234 YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI--------------CHPDV 279
           +   +R+Y    +   A GN   A E+    +    E+G +                P  
Sbjct: 146 FRHFMRLYLVTADSLIANGNLQKAHEVMRCMLRNFSEIGRLNEAVGMVMDMQNQGLSPSS 205

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           ++   ++    +  L+D A+ +F +M  RG+ PD   +  ++ G    G+I +A +    
Sbjct: 206 ITMNCVLEIAIESGLIDYAENVFDEMSVRGVCPDSSSFKLMVIGCFRDGKIQEADRWLSG 265

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN 399
           +   G IPD ++   ++++  +   V  A+  + +MI +G +P                 
Sbjct: 266 MIQRGFIPDNATCTLILSALCENGLVNRAIWYFRKMIDLGFKP----------------- 308

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
                +L  F  L+DGLCK   ++ A+E+ +++ R G +PNV T+T +I GLC  G  EK
Sbjct: 309 -----NLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEK 363

Query: 460 AYDLL 464
           A+ L 
Sbjct: 364 AFRLF 368


>gi|357485117|ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514181|gb|AES95804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 892

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 126/413 (30%), Positives = 185/413 (44%), Gaps = 62/413 (15%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVF----SPDVVTLGCLI 164
           L E L   G  P+  +  I+MN FC+ +G S        IL K++    +P+VVT G  I
Sbjct: 193 LFEVLIKFGPRPNIHTYTIMMNFFCRGVGCSVDIRRASEILGKIYMSGETPNVVTYGTYI 252

Query: 165 RGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224
           +GLC  G F    G+  + +   CR N   N  C+ ++I GLC+ G +++   +F +MK 
Sbjct: 253 KGLCKVGLF----GVAWRLIQNLCRKNQPLNNHCFNAVIYGLCQGGILDEASEVFKEMKN 308

Query: 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCS 284
            GI PD + Y+ LI  +C        KG    A E+ +E  N     G++  P++ SY  
Sbjct: 309 SGILPDVYSYSILIDGFC-------RKGRVDQASEVFKEMRNS----GIL--PNIYSYSI 355

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           +I+  CK+  VDKA E+F +MK+ GI+PDV  YS LIDG+C  G +D A K +  + S  
Sbjct: 356 LIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMTSNN 415

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN-SCILEAAELFRTLHNTKFE 403
             P   +Y +LI  Y K ++   AL  +  M  +G+ PD  +C                 
Sbjct: 416 FSPSAFNYCSLIKGYYKSKQFANALKEFRIMQKLGMWPDTIAC----------------- 458

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
                 N ++   C+      A  L +K    G   N  +Y   I  +C     EKA  L
Sbjct: 459 ------NHILSIYCRKPDFNKALALSEKFQENGVHFNPYSYNEFIHRICRGSVPEKALQL 512

Query: 464 LPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           LP                  M KR V PD +  S L     K  N  + + L 
Sbjct: 513 LP-----------------VMLKRNVLPDVVNYSTLISCFAKRLNSEKAVMLF 548



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 172/411 (41%), Gaps = 77/411 (18%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+LPD  S +IL++ FC+   V  A      +      P++ +   LI G C +G+  +A
Sbjct: 310 GILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIYSYSILIDGFCKEGRVDKA 369

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             +F +         ++P+V  Y+ +IDG C+ G ++     + +M      P AF Y S
Sbjct: 370 LEVFEEMK----NSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMTSNNFSPSAFNYCS 425

Query: 237 LIRVYCCAVNWEDA----------------------------KGNTSAALELHEEFVNGN 268
           LI+ Y  +  + +A                            K + + AL L E+F    
Sbjct: 426 LIKGYYKSKQFANALKEFRIMQKLGMWPDTIACNHILSIYCRKPDFNKALALSEKF---- 481

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
            E GV  H +  SY   I+ +C+  + +KA +L   M  R ++PDVV YS+LI  +    
Sbjct: 482 QENGV--HFNPYSYNEFIHRICRGSVPEKALQLLPVMLKRNVLPDVVNYSTLISCFAKRL 539

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL 388
             + A  LF+ +   G   +  +Y  LIN +    K++ A  L+  M    V PD     
Sbjct: 540 NSEKAVMLFIKMTKVGITFNVKTYTILINLFISDCKMDVAYRLFKGMKESRVYPDQ---- 595

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
                               +  LV G C +  +  A  LF ++ R G  PNVVTYT  I
Sbjct: 596 ------------------IAYTSLVAGFCNTGEMTRARALFDEMSREGCSPNVVTYTCFI 637

Query: 449 CGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                            +   K+ +  +A +L  KM +R V PD+I  ++L
Sbjct: 638 -----------------NEYLKLNKNNQAHKLYEKMKERGVYPDQILYTML 671



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 103/413 (24%), Positives = 160/413 (38%), Gaps = 86/413 (20%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+LP+  S +IL++ FCK   V  A      +      PDV +   LI G C +G    A
Sbjct: 345 GILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSA 404

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD-GFVNKVRVLFLDMKGRGIYPDAFVYN 235
              + +  +     N  P+   Y S+I G  K   F N ++  F  M+  G++PD    N
Sbjct: 405 IKFWEEMTS----NNFSPSAFNYCSLIKGYYKSKQFANALKE-FRIMQKLGMWPDTIACN 459

Query: 236 SLIRVYCCAVNWEDAKGNTSAALE--LHEEFVNGNGELGVICH----------------- 276
            ++ +YC   ++  A   +    E  +H    + N  +  IC                  
Sbjct: 460 HILSIYCRKPDFNKALALSEKFQENGVHFNPYSYNEFIHRICRGSVPEKALQLLPVMLKR 519

Query: 277 ---PDVLSYCSIINSLCK-----------------------------------DVLVDKA 298
              PDV++Y ++I+   K                                   D  +D A
Sbjct: 520 NVLPDVVNYSTLISCFAKRLNSEKAVMLFIKMTKVGITFNVKTYTILINLFISDCKMDVA 579

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
             LF  MK   + PD + Y+SL+ G+C  G +  AR LF  +  EGC P+  +Y   IN 
Sbjct: 580 YRLFKGMKESRVYPDQIAYTSLVAGFCNTGEMTRARALFDEMSREGCSPNVVTYTCFINE 639

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
           Y K+ K  +A  LY +M   GV PD                        ++  L+   C 
Sbjct: 640 YLKLNKNNQAHKLYEKMKERGVYPDQ----------------------ILYTMLIAAFCN 677

Query: 419 SWRLRSAWELFKKLPRYGP-EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           +  +  A  LF ++ + G   PNVV YT +I         ++A  L  +M  K
Sbjct: 678 TGEMNRAEALFDEMKQEGRCTPNVVMYTCLINSYIKLNKRDQAEKLYEEMRAK 730



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 140/315 (44%), Gaps = 18/315 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +  +AL  F  M  +   P   + N +L     K  +   + LSE+    G+  +  S N
Sbjct: 435 QFANALKEFRIMQKLGMWPDTIACNHILSIYCRKPDFNKALALSEKFQENGVHFNPYSYN 494

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
             ++  C+      A   L  +L++   PDVV    LI     +    +A  LF K    
Sbjct: 495 EFIHRICRGSVPEKALQLLPVMLKRNVLPDVVNYSTLISCFAKRLNSEKAVMLFIKMT-- 552

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             +  +  NV  Y  +I+    D  ++    LF  MK   +YPD   Y SL+  +C    
Sbjct: 553 --KVGITFNVKTYTILINLFISDCKMDVAYRLFKGMKESRVYPDQIAYTSLVAGFC---- 606

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G  + A  L +E           C P+V++Y   IN   K    ++A +L+  MK
Sbjct: 607 ---NTGEMTRARALFDEMSREG------CSPNVVTYTCFINEYLKLNKNNQAHKLYEKMK 657

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG-CIPDTSSYNTLINSYSKIEKV 365
            RG+ PD ++Y+ LI  +C  G ++ A  LF  ++ EG C P+   Y  LINSY K+ K 
Sbjct: 658 ERGVYPDQILYTMLIAAFCNTGEMNRAEALFDEMKQEGRCTPNVVMYTCLINSYIKLNKR 717

Query: 366 EEALSLYGEMISMGV 380
           ++A  LY EM + G+
Sbjct: 718 DQAEKLYEEMRAKGL 732



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 115/266 (43%), Gaps = 16/266 (6%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           AL     M+     P + ++++L+   A +      + L  ++  +G+  +  +  IL+N
Sbjct: 509 ALQLLPVMLKRNVLPDVVNYSTLISCFAKRLNSEKAVMLFIKMTKVGITFNVKTYTILIN 568

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
            F     +  A+     +      PD +    L+ G C  G+ T A  LF +     C P
Sbjct: 569 LFISDCKMDVAYRLFKGMKESRVYPDQIAYTSLVAGFCNTGEMTRARALFDEMSREGCSP 628

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
           NV+     Y   I+   K    N+   L+  MK RG+YPD  +Y  LI  +C        
Sbjct: 629 NVVT----YTCFINEYLKLNKNNQAHKLYEKMKERGVYPDQILYTMLIAAFC-------N 677

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
            G  + A  L +E +   G     C P+V+ Y  +INS  K    D+A++L+ +M+++G+
Sbjct: 678 TGEMNRAEALFDE-MKQEGR----CTPNVVMYTCLINSYIKLNKRDQAEKLYEEMRAKGL 732

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKL 336
                   S+ + +C   ++    KL
Sbjct: 733 SRLCSSEGSVSESWCCRHQVLKTGKL 758


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/435 (26%), Positives = 185/435 (42%), Gaps = 86/435 (19%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L  +L + G  PD VS N ++   C      D    +  ++R    P+V T   LI  LC
Sbjct: 200 LLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLC 259

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
             G F +     ++     C     P++  YA+IIDG+CKDG       +   M   G+ 
Sbjct: 260 RNGLFEQVHEALSQMPEHGC----TPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLK 315

Query: 229 PDAFVYNSLIRVYCCAVNWEDAK----------------------------GNTSAALEL 260
           P+   YN++++  C A  WE+A+                            G     +EL
Sbjct: 316 PNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIEL 375

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
            E+ +         C PDV++Y ++IN  CK+ LVD+A  L  +M + G  P+ + Y+ +
Sbjct: 376 LEQMLEHG------CIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIV 429

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN----------------------- 357
           + G C   R  DA++L   +  +GC+P+  ++NTLIN                       
Sbjct: 430 LKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGC 489

Query: 358 -----SYS-------KIEKVEEALSLYGEMISMGVRPDNSCILEAA-------------E 392
                SYS       K  K EEAL L   MI+ G+ P+       A             +
Sbjct: 490 SPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQ 549

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
           +F ++ +     D  ++N ++  LCK W    A + F  +   G  PN  TYT++I GL 
Sbjct: 550 MFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLA 609

Query: 453 IEGGIEKAYDLLPDM 467
            EG + +A DLL ++
Sbjct: 610 SEGLVREAQDLLSEL 624



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 101/392 (25%), Positives = 168/392 (42%), Gaps = 96/392 (24%)

Query: 160 LGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLF 219
           L  LIR LC  G+  +A+       A D   +    V+ Y ++I G C+ G V   R L 
Sbjct: 47  LSALIRSLCAAGRTADAAR------ALDTAGDA-AGVVAYNAMIAGYCRAGQVAAARRLA 99

Query: 220 LDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF-VNGNGELGVICHPD 278
             +    + P+A+ Y  ++R  C       A+G  + AL + +E  + G      +CH  
Sbjct: 100 AAVP---VPPNAYTYFPIVRSLC-------ARGLIADALTVLDEMPLRGCAATPPMCHVI 149

Query: 279 VLSYCS----------------------------IINSLCKDVLVDKAKELFLDMKSRGI 310
           + + C                             +++++C+   VD+  EL   + S G 
Sbjct: 150 LEAACRGGGFRSAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGC 209

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK---IEKVEE 367
            PD+V Y++++ G C+  R DD  +L V +   GC P+ +++NTLI    +    E+V E
Sbjct: 210 EPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHE 269

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           ALS   +M   G  P                      DL ++  ++DG+CK      A +
Sbjct: 270 ALS---QMPEHGCTP----------------------DLRMYATIIDGICKDGHHEVAND 304

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL------------ 475
           +  ++P YG +PNVV Y  ++ GLC     E+A DLL +M ++  +C             
Sbjct: 305 ILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQE--DCPLDDVTFNILVDF 362

Query: 476 --------KAIELLHKMAKRYVKPDEITVSIL 499
                   + IELL +M +    PD IT + +
Sbjct: 363 FCQNGLVDRVIELLEQMLEHGCIPDVITYTTV 394



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 104/443 (23%), Positives = 185/443 (41%), Gaps = 53/443 (11%)

Query: 110 SERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCM 169
           +  L+T G     V+ N ++  +C+   V+ A      +      P+  T   ++R LC 
Sbjct: 64  ARALDTAGDAAGVVAYNAMIAGYCRAGQVAAARRLAAAV---PVPPNAYTYFPIVRSLCA 120

Query: 170 QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDG-FVNKVRVLFLDMKGRGIY 228
           +G   +A  +  +     C        +C+  I++  C+ G F + VR L + +  +G  
Sbjct: 121 RGLIADALTVLDEMPLRGCAAT---PPMCHV-ILEAACRGGGFRSAVRALQV-LHAKGCT 175

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
            D+   N ++   C        +G     +EL  +  +        C PD++SY +++  
Sbjct: 176 LDSGNCNLVVSAIC-------EQGCVDEGVELLRKLPSFG------CEPDIVSYNAVLKG 222

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           LC     D  +EL ++M   G  P+V  +++LI   C  G  +   +    +   GC PD
Sbjct: 223 LCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPD 282

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC---IL----------EAAELFR 395
              Y T+I+   K    E A  +   M S G++P+  C   +L          EA +L  
Sbjct: 283 LRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLA 342

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            +      LD   FN LVD  C++  +    EL +++  +G  P+V+TYT +I G C EG
Sbjct: 343 EMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEG 402

Query: 456 GIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVS 497
            +++A  LL +M                    +    + A EL+  M ++   P+ +T +
Sbjct: 403 LVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFN 462

Query: 498 ILEELLNKDENCHECMNLLPSFL 520
            L   + K     + + LL   L
Sbjct: 463 TLINFMCKKGLVEQAIELLKQML 485



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 97/239 (40%), Gaps = 52/239 (21%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DA    ++MI     P   +FN+L+  +                                
Sbjct: 441 DAQELISHMIQQGCLPNPVTFNTLINFM-------------------------------- 468

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
              CK   V  A   L ++L    SPD+++   +I GL   GK  EA  L    +     
Sbjct: 469 ---CKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMI----N 521

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
             + PN I Y+S+   L ++G  +K+  +F  ++   +  DA +YN++I   C    WE 
Sbjct: 522 KGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLC--KRWE- 578

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
               T  A++     V+ NG     C P+  +Y  +I  L  + LV +A++L  ++ SR
Sbjct: 579 ----TDRAIDFFAYMVS-NG-----CMPNESTYTILIRGLASEGLVREAQDLLSELCSR 627


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 122/447 (27%), Positives = 200/447 (44%), Gaps = 73/447 (16%)

Query: 53  LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSER 112
           LL  L+E S+   +E       +N M      P + + N+L+ AL         + + E 
Sbjct: 166 LLNVLAEGSRMKLLE-----SVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEE 220

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +++  + PD  +   LM  F +   +  A     +++    SP  VT+  LI G C  G+
Sbjct: 221 MSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGR 280

Query: 173 FTEASGLFTKFVAFDCRPNVI-------------------------------PNVICYAS 201
             +A G   K +A    P+ +                               P+V  Y +
Sbjct: 281 VEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNT 340

Query: 202 IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261
           +I+ L K+G +++ + +   M  RG  PD   +N+LI   C     E+       AL+L 
Sbjct: 341 VINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEE-------ALDLA 393

Query: 262 EEF-VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
            E  V G         PDV ++  +IN+LCK         LF +MKS G  PD V Y+ L
Sbjct: 394 RELTVKG-------LSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNIL 446

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           ID  C MG++ +A  L   +ES GC   T +YNT+I++  K  ++EEA  ++ +M + G+
Sbjct: 447 IDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGI 506

Query: 381 RPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
               S +                     FN L+DGLCK+ R+  A EL +++ + G +P+
Sbjct: 507 --SRSAV--------------------TFNTLIDGLCKAKRIDDATELIEQMVKEGLQPS 544

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDM 467
            +TY  ++   C +G ++KA D+L  M
Sbjct: 545 NITYNSILTHYCKQGDLKKAADILETM 571



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 122/426 (28%), Positives = 194/426 (45%), Gaps = 33/426 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++  A+     M      P   +F +L+     +      + +  ++   G  P  V++N
Sbjct: 210 QVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVN 269

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +L+N +CKM  V DA   + + +   F PD VT    +  LC  G  + A     K +  
Sbjct: 270 VLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHA----LKVMDL 325

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             +    P+V  Y ++I+ L K+G +++ + +   M  RG  PD   +N+LI   C    
Sbjct: 326 MLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNR 385

Query: 247 WEDAKGNTSAALELHEEF-VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
            E+A       L+L  E  V G         PDV ++  +IN+LCK         LF +M
Sbjct: 386 LEEA-------LDLARELTVKG-------LSPDVYTFNILINALCKVGDPHLGIRLFEEM 431

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
           KS G  PD V Y+ LID  C MG++ +A  L   +ES GC   T +YNT+I++  K  ++
Sbjct: 432 KSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRI 491

Query: 366 EEALSLYGEMISMGVRP---------DNSC----ILEAAELFRTLHNTKFELDLTVFNCL 412
           EEA  ++ +M + G+           D  C    I +A EL   +     +     +N +
Sbjct: 492 EEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSI 551

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-I 471
           +   CK   L+ A ++ + +   G E +VVTY  +I GLC  G  + A  LL  M  K I
Sbjct: 552 LTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGI 611

Query: 472 RECLKA 477
           R   KA
Sbjct: 612 RPTPKA 617



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 114/374 (30%), Positives = 166/374 (44%), Gaps = 41/374 (10%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           SK+GE  L++A    N M+     P   +FN+L+ AL  +      + L+  L   GL P
Sbjct: 346 SKNGE--LDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSP 403

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFS----PDVVTLGCLIRGLCMQGKFTEA 176
           D  + NIL+N  CK   V D  + + R+  ++ S    PD VT   LI  LC  GK   A
Sbjct: 404 DVYTFNILINALCK---VGDPHLGI-RLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNA 459

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L  +  +  C P    + + Y +IID LCK   + +   +F  M   GI   A  +N+
Sbjct: 460 LDLLKEMESNGC-PR---STVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNT 515

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI   C A   +DA        EL E+ V           P  ++Y SI+   CK   + 
Sbjct: 516 LIDGLCKAKRIDDAT-------ELIEQMVKEG------LQPSNITYNSILTHYCKQGDLK 562

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           KA ++   M + G   DVV Y +LI+G C  GR   A KL   +  +G  P   +YN +I
Sbjct: 563 KAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVI 622

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD--------------NSCILEAAELFRTLHNTKF 402
            S  +   + +ALSL+ EM  +G  PD                 I EA +    + N  F
Sbjct: 623 QSLFRRNNLRDALSLFREMTEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNKGF 682

Query: 403 ELDLTVFNCLVDGL 416
             + + F  L +GL
Sbjct: 683 MPEFSSFRMLAEGL 696



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/368 (23%), Positives = 152/368 (41%), Gaps = 58/368 (15%)

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            R +  P+   Y  II  L   G  + +  L  +M+  G    A V  S +  Y     +
Sbjct: 81  AREDFAPSRAVYEEIIQKLGTAGAFDLMEGLVREMRREGHEAGAGVVRSFVESYARLRRF 140

Query: 248 EDA-------------KGNTS------------AALELHEEFVNGNGELGVICHPDVLSY 282
           +DA             + +T+            + ++L E   N   + G+   PDV++ 
Sbjct: 141 DDAVDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGI--QPDVVTL 198

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
            ++I +LC+   V  A  +  +M S  + PD   +++L+ G+   G I+ A ++   +  
Sbjct: 199 NTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMME 258

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILE 389
            GC P   + N LIN Y K+ +VE+AL    + I+ G  PD             N  +  
Sbjct: 259 TGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSH 318

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
           A ++   +     + D+  +N +++ L K+  L  A  +  ++   G  P+  T+  +I 
Sbjct: 319 ALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIV 378

Query: 450 GLCIEGGIEKAYDLL---------PDMEE---------KIRECLKAIELLHKMAKRYVKP 491
            LC +  +E+A DL          PD+           K+ +    I L  +M      P
Sbjct: 379 ALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAP 438

Query: 492 DEITVSIL 499
           DE+T +IL
Sbjct: 439 DEVTYNIL 446


>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 680

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 110/408 (26%), Positives = 188/408 (46%), Gaps = 55/408 (13%)

Query: 148 ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207
           +L++   P VVT   L+  +C    F EA  +  +  A  C     PN++ Y  II+G+C
Sbjct: 178 MLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGC----TPNIVTYNVIINGMC 233

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
           ++G V+  + +   +   G  PD   Y ++++  C A  W+D K        L  E V+ 
Sbjct: 234 REGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVK-------VLFAEMVDK 286

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
                  C P+ +++  ++   C+  +V++A ++   M   G  P+  + + +I+  C  
Sbjct: 287 K------CVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQ 340

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS-- 385
           GR+DDA     ++   GC PDT SY T++    +  + E A  L  EM+     P+    
Sbjct: 341 GRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTF 400

Query: 386 ----CIL-------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
               CIL       +A +L   +      + +  +N LV G C   R+ SA ELF  LP 
Sbjct: 401 NTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLP- 459

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL------------------- 475
              EPN +TYT ++ GLC    ++ A +LL +M +K  +C                    
Sbjct: 460 --CEPNTITYTTLLTGLCHAERLDAAAELLAEMIQK--DCPLNAVTFNVLVSFFCQKGFV 515

Query: 476 -KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
            +A+EL+++M +    P+ IT + L + + KD N  E + LL   +S+
Sbjct: 516 EEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSK 563



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 116/470 (24%), Positives = 202/470 (42%), Gaps = 86/470 (18%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           M+     P + ++  LL A+     +   + + + +   G  P+ V+ N+++N  C+   
Sbjct: 178 MLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGR 237

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI---- 193
           V DA   L R+    F PD+V+   +++GLC   ++ +   LF + V   C PN +    
Sbjct: 238 VDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDM 297

Query: 194 ---------------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
                                      PN      +I+ +CK G V+       +M   G
Sbjct: 298 LVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYG 357

Query: 227 IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII 286
             PD   Y +++R  C A  WE AK       EL  E V  N      C P+ +++ + I
Sbjct: 358 CNPDTISYTTVLRGLCRAGRWEHAK-------ELLPEMVRKN------CPPNEVTFNTFI 404

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
             LC+  L+++A +L   M   G    +V Y++L+ G+C+ GR+D A +LF ++    C 
Sbjct: 405 CILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLP---CE 461

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406
           P+T +Y TL+      E+++ A  L  EMI         C L A                
Sbjct: 462 PNTITYTTLLTGLCHAERLDAAAELLAEMI------QKDCPLNAV--------------- 500

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             FN LV   C+   +  A EL  ++  +G  PN++T+  ++ G+  +   E        
Sbjct: 501 -TFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSE-------- 551

Query: 467 MEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                    +A+ELLH +  + V  D IT S + ++L++++   E + +L
Sbjct: 552 ---------EALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQML 592



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 188/415 (45%), Gaps = 33/415 (7%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           +D    F  M+  +  P   +F+ L+            I + ++++  G  P+    NI+
Sbjct: 274 DDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIV 333

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           +N  CK   V DA+  L  +     +PD ++   ++RGLC  G++  A  L  + V    
Sbjct: 334 INAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMV---- 389

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
           R N  PN + + + I  LC+ G + +   L   M   G       YN+L+  +C      
Sbjct: 390 RKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFC------ 443

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
             +G   +ALEL   F N      + C P+ ++Y +++  LC    +D A EL  +M  +
Sbjct: 444 -VQGRVDSALEL---FNN------LPCEPNTITYTTLLTGLCHAERLDAAAELLAEMIQK 493

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
               + V ++ L+  +C  G +++A +L   +   GC P+  ++NTL++  +K    EEA
Sbjct: 494 DCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEA 553

Query: 369 LSLYGEMISMGVRPDN---SCIL----------EAAELFRTLHNTKFELDLTVFNCLVDG 415
           L L   ++S GV  D    S ++          EA ++   + +      + ++N ++  
Sbjct: 554 LELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFA 613

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           LCK      A + F  +   G  PN  TY ++I GL  EG +++A  +L ++  K
Sbjct: 614 LCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSELYAK 668



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 129/304 (42%), Gaps = 22/304 (7%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           M+     P   +FN+ +  L  K      I L E +   G     V+ N L++ FC    
Sbjct: 388 MVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGR 447

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP-NV 196
           V  A      +      P+ +T   L+ GLC   +   A+ L  + +  DC     P N 
Sbjct: 448 VDSALELFNNL---PCEPNTITYTTLLTGLCHAERLDAAAELLAEMIQKDC-----PLNA 499

Query: 197 ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSA 256
           + +  ++   C+ GFV +   L   M   G  P+   +N+L+       +      N+  
Sbjct: 500 VTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLL-------DGITKDCNSEE 552

Query: 257 ALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV 316
           ALEL    V+    L      D ++Y S+++ L ++   ++A ++   ++  G+ P V +
Sbjct: 553 ALELLHGLVSKGVSL------DTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGM 606

Query: 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
           Y+ ++   C     D A   F  + S GC+P+ S+Y  LI   +    ++EA  +  E+ 
Sbjct: 607 YNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSELY 666

Query: 377 SMGV 380
           + GV
Sbjct: 667 AKGV 670


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 127/482 (26%), Positives = 215/482 (44%), Gaps = 56/482 (11%)

Query: 51  TKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLS 110
           T ++ +L  NS+        AL F   M+     P      +L+G L  +  + + + L 
Sbjct: 492 TTIIHWLCMNSR-----FESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELW 546

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
            RL   G   + V+ N L++  CK   + +A   L ++L + F  D +T   LI G C +
Sbjct: 547 FRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKE 606

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           GK  E   L  + V    +  + P+   Y  +I G+C+ G +++   L+ + K R + P+
Sbjct: 607 GKVEEGFKLRGEMV----KQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPN 662

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
            + Y  +I  YC A   E+ +       +L  E +  N EL  +       Y ++I + C
Sbjct: 663 VYTYGVMIDGYCKADKIEEGE-------KLFTELLTQNLELNSVV------YNTLIRAYC 709

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           ++    +A +L  DM+S+GI P    YSSLI G C +GR++DA+ L   +  EG +P+  
Sbjct: 710 RNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVV 769

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFN 410
            Y  LI  Y K+ ++++ +++  EM S  + P+                         + 
Sbjct: 770 CYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNK----------------------ITYT 807

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD---- 466
            ++DG  KS  +++A +L  ++   G  P+ VTY V+  G C EG IE+   L  D    
Sbjct: 808 VMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGKLLAEDGVGF 867

Query: 467 ------MEEKIRECLKAIELL-HKMAKRYVKPDE-ITVSILEELLNKDENCHECMNLLPS 518
                 + E  R C + ++L   K    Y  P   +T   L  L     +  EC+ LL  
Sbjct: 868 NSPLFLIHEAFRACTRRVDLWAKKFFANYTNPSSYMTTKPLLVLFGWSISSVECLILLAE 927

Query: 519 FL 520
            L
Sbjct: 928 IL 929



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 113/445 (25%), Positives = 200/445 (44%), Gaps = 75/445 (16%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  P+ V  N L++ +CKM  + DA    G ++ K  +P+ VTL  +I+G C  G+  +A
Sbjct: 413 GFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQA 472

Query: 177 S---------------GLFTKFVAFDCR----------------PNVIPNVICYASIIDG 205
                           G FT  + + C                  N+ PN     +++ G
Sbjct: 473 ECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGG 532

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
           LCK+G  +    L+  +  +G   +    N+LI   C         GN   A+ L ++ +
Sbjct: 533 LCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLC-------KTGNMQEAVRLLKKML 585

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
               E G +   D ++Y ++I+  CK+  V++  +L  +M  +GI PD   Y+ LI G C
Sbjct: 586 ----ERGFVL--DKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMC 639

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-- 383
            +G++D+A  L+   +S   +P+  +Y  +I+ Y K +K+EE   L+ E+++  +  +  
Sbjct: 640 RIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSV 699

Query: 384 -----------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
                      N   +EA +L   + +         ++ L+ G+C   R+  A  L  ++
Sbjct: 700 VYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEM 759

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEK---------AYDLLP---------DMEEKIREC 474
            + G  PNVV YT +I G C  G ++K         +YD+ P         D   K  + 
Sbjct: 760 RKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDM 819

Query: 475 LKAIELLHKMAKRYVKPDEITVSIL 499
             A +LLH+M  + + PD +T ++L
Sbjct: 820 KTAAKLLHEMVGKGIVPDTVTYNVL 844



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 114/435 (26%), Positives = 193/435 (44%), Gaps = 52/435 (11%)

Query: 123 VSLNILMNCFC---KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
            ++++L++ +C   + +G  +A      +  K   P V T   L+  L    +  ++  +
Sbjct: 242 AAVDLLIHVYCTQFRNVGFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWV 301

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F        R  V P+V  +++ I+  CK G V     LF DM+  G+ P+   YN+LI 
Sbjct: 302 FETM-----RQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIH 356

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C         GN   A    E+ V          +  +++Y  +IN L K    ++A 
Sbjct: 357 GLC-------KHGNLDEAFRFKEKMVKDG------VNATLITYSVLINGLMKLEKFNEAN 403

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            +  +   +G  P+ VVY++LIDGYC MG + DA ++   + S+G  P++ + N++I  +
Sbjct: 404 SVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGF 463

Query: 360 SKIEKVEEALSLYGEMISMG--VRPD-----------NSCILEAAELFRTLHNTKFELDL 406
            KI ++E+A  +  EM+S G  + P            NS    A    R +       + 
Sbjct: 464 CKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPND 523

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
            +   LV GLCK  +   A EL+ +L   G   N+VT   +I GLC  G +++A  LL  
Sbjct: 524 GLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKK 583

Query: 467 MEEK------------IRECLK------AIELLHKMAKRYVKPDEITVSILEELLNKDEN 508
           M E+            I  C K        +L  +M K+ ++PD  T ++L   + +   
Sbjct: 584 MLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGK 643

Query: 509 CHECMNLLPSFLSRN 523
             E +NL     SR+
Sbjct: 644 LDEAVNLWNECKSRD 658



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 136/585 (23%), Positives = 220/585 (37%), Gaps = 138/585 (23%)

Query: 66  VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAG-----KKYYVNFICLSERLNTIGLLP 120
           V   +A+  F ++ +    P + +   LL +L       K Y+V F  + +     G+ P
Sbjct: 258 VGFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWV-FETMRQ-----GVSP 311

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           D    +  +N FCK   V DA      + +   SP+VVT   LI GLC  G   EA    
Sbjct: 312 DVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFK 371

Query: 181 TKFVAFDCRPNVI-------------------------------PNVICYASIIDGLCKD 209
            K V       +I                               PN + Y ++IDG CK 
Sbjct: 372 EKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKM 431

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE--LHEEFVNG 267
           G +     +  DM  +GI P++   NS+I+ +C     E A+      LE  L   F   
Sbjct: 432 GNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAE----CILEEMLSRGFSIN 487

Query: 268 NGELGVICH------------------------PDVLSYCSIINSLCKDVLVDKAKELFL 303
            G    I H                        P+     +++  LCK+     A EL+ 
Sbjct: 488 PGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWF 547

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            +  +G   ++V  ++LI G C  G + +A +L   +   G + D  +YNTLI+   K  
Sbjct: 548 RLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEG 607

Query: 364 KVEEALSLYGEMISMGVRPD------------------------NSC------------- 386
           KVEE   L GEM+  G+ PD                        N C             
Sbjct: 608 KVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYG 667

Query: 387 -----------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
                      I E  +LF  L     EL+  V+N L+   C++     A++L   +   
Sbjct: 668 VMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSK 727

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKA 477
           G  P   TY+ +I G+C  G +E A  L+ +M +                  K+ +  K 
Sbjct: 728 GIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKV 787

Query: 478 IELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
           + +L +M+   + P++IT +++ +  +K  +      LL   + +
Sbjct: 788 VNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGK 832


>gi|225427506|ref|XP_002263778.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g31840-like [Vitis vinifera]
          Length = 1131

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 114/455 (25%), Positives = 206/455 (45%), Gaps = 74/455 (16%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ V+ + L+N +CK + + +AF     ++ K   PD+V    LI GL   GK  E + L
Sbjct: 273 PNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEEGNSL 332

Query: 180 FTKFVAFDCRPNVI-------------------------------PNVICYASIIDGLCK 208
           F+  +A   + +V+                               PNV+ Y+ +I+GLC+
Sbjct: 333 FSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCR 392

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           +G V +   +F  +  +G+ P    Y+SLI  +C + N  D  G     L          
Sbjct: 393 NGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLR--------K 444

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
           G +     PDV+    +IN L +  ++D+A   F     RG+  +  ++++LIDG   + 
Sbjct: 445 GHV-----PDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLK 499

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN--SC 386
           R  D  K+++ +     IPD  +Y  L+   ++  +++EAL+L+ +++  G  PD+   C
Sbjct: 500 RTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYC 559

Query: 387 IL-----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
            L              ++F+ + +     D+ ++N L++   +   + +  EL +++ +Y
Sbjct: 560 TLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKY 619

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEIT 495
           G EP++VTY  MICG C                  ++   KAI+L   +     +P+ IT
Sbjct: 620 GLEPDIVTYNTMICGYC-----------------SLKIFSKAIKLFEVLKCGRTQPNAIT 662

Query: 496 VSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
            +IL +   KD    + M +  S L R  E + LT
Sbjct: 663 FTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILT 697



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 145/313 (46%), Gaps = 39/313 (12%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
           PDVVT   L++GL  QG+  EA  LF + +    +    P+ I Y ++IDG CK      
Sbjct: 518 PDVVTYTVLVKGLAEQGRLDEALALFFQLL----KKGFSPDHIIYCTLIDGFCKKRDPAT 573

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
              +F  M+  GI+PD  +YN LI ++         +G     LEL  E +    E    
Sbjct: 574 GLQIFKLMQSNGIFPDICIYNVLINMFF-------REGCVENVLELLREIIKYGLE---- 622

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
             PD+++Y ++I   C   +  KA +LF  +K     P+ + ++ LID YC  GR+DDA 
Sbjct: 623 --PDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAM 680

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
            +F S+   G  P+  +Y+ LI+ Y K E  E A  LY +M+   V P            
Sbjct: 681 LIFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKMLGDRVSP------------ 728

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
                     ++  ++ L+DGLCK   +  A   F+        P+V+ Y ++I G C  
Sbjct: 729 ----------NIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKV 778

Query: 455 GGIEKAYDLLPDM 467
           G + +A  L   M
Sbjct: 779 GRLAEAMMLYDHM 791



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 164/381 (43%), Gaps = 46/381 (12%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N  S +  +++AL FF   +    T     FN+L+      K   + + +   +    ++
Sbjct: 458 NGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVI 517

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG-------- 171
           PD V+  +L+    +   + +A     ++L+K FSPD +    LI G C +         
Sbjct: 518 PDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQI 577

Query: 172 -KFTEASGLFTKFVAFD----------CRPNVI------------PNVICYASIIDGLCK 208
            K  +++G+F     ++          C  NV+            P+++ Y ++I G C 
Sbjct: 578 FKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCS 637

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
               +K   LF  +K     P+A  +  LI  YC     +DA    S+ LE   E     
Sbjct: 638 LKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPE----- 692

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                   P++L+Y  +I+   K    + A EL+  M    + P++V YS LIDG C  G
Sbjct: 693 --------PNILTYSCLIDGYFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKKG 744

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL 388
            +++A   F        +PD  +Y  LI  Y K+ ++ EA+ LY  M+  G+ PD+  +L
Sbjct: 745 LMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKVGRLAEAMMLYDHMLVNGIMPDD--LL 802

Query: 389 EAAELFRTLHNTKFELDLTVF 409
           + A       +++  +  TVF
Sbjct: 803 QKALAEYGFQDSQASIYSTVF 823



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 141/358 (39%), Gaps = 84/358 (23%)

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM----- 305
           + N ++AL   E   N  G    +CHP V S+C I + L +  + D A  +F  M     
Sbjct: 66  RSNPTSALRFFEWAENFLG----LCHP-VQSFCGIAHVLLRHRMFDPATRVFDRMVGQFG 120

Query: 306 ------------KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC-------- 345
                       ++ G  P  V YS L+  YC  G +D A   F  +   G         
Sbjct: 121 NLEVLGEFHGSFRNYGSNPSTV-YSFLLHCYCRNGMVDRAVDTFAWMSKMGVSISHYAAS 179

Query: 346 -----IPDTSS-----------------YNTLINSYSKIEKVEEALSLYGEMISMGVRP- 382
                + D+                   Y  + NS+ K  +VE+ L+ +  ++  G+ P 
Sbjct: 180 EMLDLLIDSDRIDVILENYEEMCKGLGVYEFVFNSFLKRGEVEKGLNFHRALVERGLVPK 239

Query: 383 --DNSCILE----------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
             D + IL+          A++ F  +  +    +L  F+ L++  CK  RL  A+ L+ 
Sbjct: 240 IVDCNKILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYN 299

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP------------------DMEEKIR 472
            +   G  P++V Y+++I GL   G +E+   L                    D   ++ 
Sbjct: 300 LMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVG 359

Query: 473 ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           +  KAIE+  +M K  + P+ +T SIL   L ++    E   +    L +  E S LT
Sbjct: 360 DLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLT 417


>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 606

 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 117/414 (28%), Positives = 201/414 (48%), Gaps = 54/414 (13%)

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           LM    K    +D       ++R+   P+V T   +I  LC  GK  +A  +      + 
Sbjct: 194 LMVALLKQNRSADVEYLYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYG 253

Query: 188 CRPNVIPNVICYASIIDGLCK---DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
             PNV+     Y ++IDG CK   +G + K   +  +M    + P+   +N LI  +   
Sbjct: 254 YSPNVV----SYNTLIDGYCKLGGNGKMYKADAVLKEMVENEVSPNLTTFNILIDGF--- 306

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
             W+D   N   +L++ +E ++ +    VI  P+V++Y S+IN LC    +++A  +   
Sbjct: 307 --WKD--DNLPGSLKVFKEMLDQD----VI--PNVITYNSLINGLCNGGKINEAIGMRDK 356

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M S G+ P+++ Y SLI+G+C  G + +A  +F S++ +G  P T  YN LI++Y K+ K
Sbjct: 357 MVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGK 416

Query: 365 VEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNC 411
           +++  +L  EM   G+ PD             N  I  A +LF  L N     DL  F+ 
Sbjct: 417 IDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGLP-DLVTFHI 475

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI 471
           L++G C     R A  L K++ + G +P  +TY +M+ G C EG ++ A ++   ME++ 
Sbjct: 476 LMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKER 535

Query: 472 R-------------------ECLKAIELLHKMAKRYVKPDEITVSIL-EELLNK 505
           R                   +   A  LL++M ++ + P+ IT  I+ EE+++K
Sbjct: 536 RLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDK 589



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 179/390 (45%), Gaps = 53/390 (13%)

Query: 84  TPFMPSFNSLLGAL-----AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGV 138
           +P + S+N+L+         GK Y  + +      N +   P+  + NIL++ F K   +
Sbjct: 255 SPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENEVS--PNLTTFNILIDGFWKDDNL 312

Query: 139 SDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVIC 198
             +      +L +   P+V+T   LI GLC  GK  EA G+  K V+      V PN+I 
Sbjct: 313 PGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVS----AGVQPNLIT 368

Query: 199 YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL 258
           Y S+I+G CK+G + +   +F  +KG+G  P   +YN LI  YC         G      
Sbjct: 369 YHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYC-------KLGKIDDGF 421

Query: 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS 318
            L EE        G++  PDV +Y  +I  LC++  ++ AK+LF  + ++G +PD+V + 
Sbjct: 422 ALKEEM----EREGIV--PDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKG-LPDLVTFH 474

Query: 319 SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
            L++GYC  G    A  L   +   G  P   +YN ++  Y K   ++ A ++  +M   
Sbjct: 475 ILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQM--- 531

Query: 379 GVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
                        E  R L      +++  +N L+ G  +  +L  A  L  ++   G  
Sbjct: 532 -------------EKERRLR-----MNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLV 573

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           PN +TY ++      E  ++K +  +PD+E
Sbjct: 574 PNRITYEIV-----KEEMVDKGF--VPDIE 596



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 139/314 (44%), Gaps = 35/314 (11%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           +L  F  M+     P + ++NSL+  L         I + +++ + G+ P+ ++ + L+N
Sbjct: 315 SLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLIN 374

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
            FCK   + +A      +  +   P       LI   C  GK  +   L  +      R 
Sbjct: 375 GFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEME----RE 430

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
            ++P+V  Y  +I GLC++G +   + LF  +  +G+ PD   ++ L+  YC       +
Sbjct: 431 GIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGL-PDLVTFHILMEGYC-------S 482

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM-KSRG 309
           +G +  A  L +E      ++G+   P  L+Y  ++   CK+  +  A  +   M K R 
Sbjct: 483 RGESRKAAMLLKEM----SKMGL--KPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKERR 536

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
           +  +V  Y+ L+ GY   G+++DA  L   +  +G +P+  +Y          E V+E  
Sbjct: 537 LRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITY----------EIVKE-- 584

Query: 370 SLYGEMISMGVRPD 383
               EM+  G  PD
Sbjct: 585 ----EMVDKGFVPD 594



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 109/251 (43%), Gaps = 17/251 (6%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++N+A+   + M+     P + +++SL+            + + + +   G  P     N
Sbjct: 346 KINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYN 405

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +L++ +CK+  + D F     + R+   PDV T  CLI GLC  G    A  LF +    
Sbjct: 406 MLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTN- 464

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                 +P+++ +  +++G C  G   K  +L  +M   G+ P    YN +++ YC    
Sbjct: 465 ----KGLPDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYC---- 516

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
               +GN  AA  +  +      E       +V SY  ++    +   ++ A  L  +M 
Sbjct: 517 ---KEGNLKAATNMRTQM-----EKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEML 568

Query: 307 SRGIIPDVVVY 317
            +G++P+ + Y
Sbjct: 569 EKGLVPNRITY 579



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 14/131 (10%)

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
           L++ +   K + ++  FN +++ LCK+ ++  A ++ + +  YG  PNVV+Y  +I G C
Sbjct: 210 LYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYC 269

Query: 453 IEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHEC 512
             GG  K Y              KA  +L +M +  V P+  T +IL +   KD+N    
Sbjct: 270 KLGGNGKMY--------------KADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGS 315

Query: 513 MNLLPSFLSRN 523
           + +    L ++
Sbjct: 316 LKVFKEMLDQD 326


>gi|296088470|emb|CBI37461.3| unnamed protein product [Vitis vinifera]
          Length = 822

 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 114/455 (25%), Positives = 206/455 (45%), Gaps = 74/455 (16%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ V+ + L+N +CK + + +AF     ++ K   PD+V    LI GL   GK  E + L
Sbjct: 273 PNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEEGNSL 332

Query: 180 FTKFVAFDCRPNVI-------------------------------PNVICYASIIDGLCK 208
           F+  +A   + +V+                               PNV+ Y+ +I+GLC+
Sbjct: 333 FSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCR 392

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           +G V +   +F  +  +G+ P    Y+SLI  +C + N  D  G     L          
Sbjct: 393 NGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLR--------K 444

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
           G +     PDV+    +IN L +  ++D+A   F     RG+  +  ++++LIDG   + 
Sbjct: 445 GHV-----PDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLK 499

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN--SC 386
           R  D  K+++ +     IPD  +Y  L+   ++  +++EAL+L+ +++  G  PD+   C
Sbjct: 500 RTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYC 559

Query: 387 IL-----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
            L              ++F+ + +     D+ ++N L++   +   + +  EL +++ +Y
Sbjct: 560 TLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKY 619

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEIT 495
           G EP++VTY  MICG C                  ++   KAI+L   +     +P+ IT
Sbjct: 620 GLEPDIVTYNTMICGYC-----------------SLKIFSKAIKLFEVLKCGRTQPNAIT 662

Query: 496 VSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
            +IL +   KD    + M +  S L R  E + LT
Sbjct: 663 FTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILT 697



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 100/359 (27%), Positives = 157/359 (43%), Gaps = 56/359 (15%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
           PDVVT   L++GL  QG+  EA  LF + +    +    P+ I Y ++IDG CK      
Sbjct: 518 PDVVTYTVLVKGLAEQGRLDEALALFFQLL----KKGFSPDHIIYCTLIDGFCKKRDPAT 573

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
              +F  M+  GI+PD  +YN LI ++         +G     LEL  E +    E    
Sbjct: 574 GLQIFKLMQSNGIFPDICIYNVLINMFF-------REGCVENVLELLREIIKYGLE---- 622

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
             PD+++Y ++I   C   +  KA +LF  +K     P+ + ++ LID YC  GR+DDA 
Sbjct: 623 --PDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAM 680

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
            +F S+   G  P+  +Y+ LI+ Y K E  E A  LY +M+   V P            
Sbjct: 681 LIFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKMLGDRVSP------------ 728

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
                     ++  ++ L+DGLCK   +  A   F+        P+V+ Y ++I G C  
Sbjct: 729 ----------NIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGYC-- 776

Query: 455 GGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECM 513
                          K+    +A+ L   M    + PD++    L E   +D     C+
Sbjct: 777 ---------------KVGRLAEAMMLYDHMLVNGIMPDDLLQKALAEYGFQDSQAKNCV 820



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 86/184 (46%), Gaps = 12/184 (6%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + ++N+++      K +   I L E L      P+ ++  IL++ +CK   + DA + 
Sbjct: 623 PDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLI 682

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
              +L +   P+++T  CLI G         A  L+ K +       V PN++ Y+ +ID
Sbjct: 683 FSSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKMLG----DRVSPNIVSYSILID 738

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE- 263
           GLCK G + +  + F    GR + PD   Y  LIR YC         G  + A+ L++  
Sbjct: 739 GLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGYC-------KVGRLAEAMMLYDHM 791

Query: 264 FVNG 267
            VNG
Sbjct: 792 LVNG 795



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 141/358 (39%), Gaps = 84/358 (23%)

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM----- 305
           + N ++AL   E   N  G    +CHP V S+C I + L +  + D A  +F  M     
Sbjct: 66  RSNPTSALRFFEWAENFLG----LCHP-VQSFCGIAHVLLRHRMFDPATRVFDRMVGQFG 120

Query: 306 ------------KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC-------- 345
                       ++ G  P  V YS L+  YC  G +D A   F  +   G         
Sbjct: 121 NLEVLGEFHGSFRNYGSNPSTV-YSFLLHCYCRNGMVDRAVDTFAWMSKMGVSISHYAAS 179

Query: 346 -----IPDTSS-----------------YNTLINSYSKIEKVEEALSLYGEMISMGVRP- 382
                + D+                   Y  + NS+ K  +VE+ L+ +  ++  G+ P 
Sbjct: 180 EMLDLLIDSDRIDVILENYEEMCKGLGVYEFVFNSFLKRGEVEKGLNFHRALVERGLVPK 239

Query: 383 --DNSCILE----------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
             D + IL+          A++ F  +  +    +L  F+ L++  CK  RL  A+ L+ 
Sbjct: 240 IVDCNKILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYN 299

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP------------------DMEEKIR 472
            +   G  P++V Y+++I GL   G +E+   L                    D   ++ 
Sbjct: 300 LMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVG 359

Query: 473 ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           +  KAIE+  +M K  + P+ +T SIL   L ++    E   +    L +  E S LT
Sbjct: 360 DLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLT 417



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 61/125 (48%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            ++DA+  F+ M+   P P + +++ L+      +   +   L E++    + P+ VS +
Sbjct: 675 RMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKMLGDRVSPNIVSYS 734

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           IL++  CK   + +A +A    + +   PDV+  G LIRG C  G+  EA  L+   +  
Sbjct: 735 ILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKVGRLAEAMMLYDHMLVN 794

Query: 187 DCRPN 191
              P+
Sbjct: 795 GIMPD 799


>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
 gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
          Length = 702

 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/445 (25%), Positives = 214/445 (48%), Gaps = 50/445 (11%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +++ A+  F+ +      P   ++++L+  LA      N + L + +   G+  D V  N
Sbjct: 173 DVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYGVQADAVCYN 232

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKV-FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
            L++   +      A     +++R    SP++ T   ++ GLC  G+F EA  ++++ +A
Sbjct: 233 ALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMMA 292

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
                N   + + Y  +I GLC+ G V+    ++ DM   G+  D  VYNSLI+ +C   
Sbjct: 293 ----NNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVG 348

Query: 246 N-------WEDA--------------------KGNTSAALELHEEFVNGNGELGVICHPD 278
                   W+                       G  S A EL ++  N        C PD
Sbjct: 349 RTGEAWKFWDSTGFSGIRQITTYNIMTKGLLDSGMVSEATELLKQLENDAS-----CSPD 403

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
            +++ ++I+ LC++   ++A E+  D ++ G   DV  YSS+I+ +C  GR  DA +++ 
Sbjct: 404 KVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYK 463

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC--- 386
           ++  +GC P++  YN LIN + ++ K+ +A+ +Y EM S G  P         D  C   
Sbjct: 464 NMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAE 523

Query: 387 -ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
              EA+ L + +    F+ D+  +  L+ GLC+  ++  A  ++ ++   G + +V+ + 
Sbjct: 524 KYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHN 583

Query: 446 VMICGLCIEGGIEKAYDLLPDMEEK 470
           ++I GLC  G +++A+ +  +M+EK
Sbjct: 584 ILIHGLCSAGKVDEAFCIYLEMKEK 608



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 119/449 (26%), Positives = 198/449 (44%), Gaps = 72/449 (16%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERL-NTIGLLPDFVSL 125
           +L++AL   + M +         +N+LL        +   + + E+L    G  P+  + 
Sbjct: 208 QLDNALDLLDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATY 267

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
            ++++  CK+    +A     R++      D VT G LI GLC  G    A+ +++  V 
Sbjct: 268 KVMLDGLCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMV- 326

Query: 186 FDCRPNVIPNVICYASIIDGLCK-------------DGFVNKVRVLFLDMKGRGIY---- 228
              +  ++ +V  Y S+I G C+              GF    ++   ++  +G+     
Sbjct: 327 ---KAGLVLDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFSGIRQITTYNIMTKGLLDSGM 383

Query: 229 ------------------PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGE 270
                             PD   + +LI   C         G  + A E+ E+  N   E
Sbjct: 384 VSEATELLKQLENDASCSPDKVTFGTLIHGLC-------ENGYANRAFEILEDARNSGEE 436

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
           L      DV SY S+IN  CKD     A E++ +M   G  P+  VY++LI+G+C + +I
Sbjct: 437 L------DVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKI 490

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEA 390
           +DA K+++ + S GC P   +YNTLI+   K EK +EA SL  EM+  G +PD   I   
Sbjct: 491 NDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPD---IRTY 547

Query: 391 AELFRTLHNTK----------------FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
           A L R L   K                 ++D+ V N L+ GLC + ++  A+ ++ ++  
Sbjct: 548 ASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKE 607

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
               PN+VTY  ++ G    G I+KA  L
Sbjct: 608 KNCSPNLVTYNTLMDGFYEIGSIDKAASL 636



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 158/339 (46%), Gaps = 39/339 (11%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V+   L++  C+    + AF  L          DV +   +I   C  G+  +A+ +
Sbjct: 402 PDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEV 461

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           +   V   C+PN       Y ++I+G C+   +N    ++++M   G  P    YN+LI 
Sbjct: 462 YKNMVKDGCKPNSH----VYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLID 517

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C A  +++A   T   LE   +             PD+ +Y S+I  LC+D  VD A 
Sbjct: 518 GLCKAEKYQEASSLTKEMLERGFK-------------PDIRTYASLIRGLCRDKKVDVAL 564

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            ++ ++   G+  DV+V++ LI G C  G++D+A  +++ ++ + C P+  +YNTL++ +
Sbjct: 565 RIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGF 624

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            +I  +++A SL+  ++  G++P                      D+  +N  + GLC  
Sbjct: 625 YEIGSIDKAASLWTAILDNGLKP----------------------DIVTYNTRIKGLCSC 662

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
            R      L  ++   G  P V+T+++++  +   G I+
Sbjct: 663 NRTPEGVLLLNEVLATGIMPTVITWSILVRAVIKYGPIQ 701



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 111/443 (25%), Positives = 190/443 (42%), Gaps = 53/443 (11%)

Query: 116 IGLLPDFVSLNILMNCFCKMIGVSDA---FVAL--GRILRKVFSPDVVTLGCLIRGLCMQ 170
           +G  P   S N L++ F +    SDA   F +L  G   R++ +P++ T   ++R LC +
Sbjct: 113 LGCNPGVRSHNTLLDAFVRARRYSDADAFFASLSHGAFGRRI-APNLQTYNIILRSLCAR 171

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G    A  LF+       R  V P+ + Y++++ GL K   ++    L  +M   G+  D
Sbjct: 172 GDVDRAVSLFSSLR----RRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYGVQAD 227

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
           A  YN+L+   C         G    A+++ E+ V   G       P++ +Y  +++ LC
Sbjct: 228 AVCYNALLS-GCFRT------GMFEKAMKVWEQLVRDPG-----ASPNLATYKVMLDGLC 275

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K     +A E++  M +     D V Y  LI G C  G +D A +++  +   G + D S
Sbjct: 276 KLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVS 335

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRP------------DNSCILEAAELFRTLH 398
            YN+LI  + ++ +  EA   +      G+R             D+  + EA EL + L 
Sbjct: 336 VYNSLIKGFCEVGRTGEAWKFWDSTGFSGIRQITTYNIMTKGLLDSGMVSEATELLKQLE 395

Query: 399 N-TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
           N      D   F  L+ GLC++     A+E+ +     G E +V +Y+ MI   C +G  
Sbjct: 396 NDASCSPDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRT 455

Query: 458 EKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
             A ++  +M +                  ++ +   AI++  +M      P  IT + L
Sbjct: 456 HDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTL 515

Query: 500 EELLNKDENCHECMNLLPSFLSR 522
            + L K E   E  +L    L R
Sbjct: 516 IDGLCKAEKYQEASSLTKEMLER 538



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 4/176 (2%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++NDA+  +  M      P + ++N+L+  L   + Y     L++ +   G  PD  +  
Sbjct: 489 KINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYA 548

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+   C+   V  A      IL      DV+    LI GLC  GK  EA  ++ +    
Sbjct: 549 SLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEK 608

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
           +C     PN++ Y +++DG  + G ++K   L+  +   G+ PD   YN+ I+  C
Sbjct: 609 NCS----PNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTRIKGLC 660


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 129/439 (29%), Positives = 206/439 (46%), Gaps = 49/439 (11%)

Query: 96  ALAGKKYYVNFICLSERLNTIGLLP---DFVSLNILMNCFCKMIGVSDAFVALGRIL--- 149
           A A    ++  + L E    +  LP   D VS N ++   C+  G  DA + L R++   
Sbjct: 27  AAARLNRHLRLLPLPESPALLSALPSVRDAVSYNTVLAALCRQ-GCLDAALFLLRVMSHE 85

Query: 150 -RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
            R    P+ ++   L+R LC   +  +A GL       DC   V P+V+ Y ++I GLC 
Sbjct: 86  PRLASRPNAISYTTLMRALCADRRAAQAVGLLRSMQ--DC--GVRPDVVTYGTLIRGLCD 141

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
              V+    L  +M   GI P+  VY+ L+  YC    WE          ++ EE  +G 
Sbjct: 142 AADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVG-------KVFEEM-SGR 193

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
           G       PDV+ Y ++I+SLC+   V KA  +   M  RG+ P+VV Y+ LI+  C  G
Sbjct: 194 G-----IEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEG 248

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS--MGVRPD--- 383
            + +A  L  ++  +G  PD  +YNTLI   S + +++EA++L  EM+     VRPD   
Sbjct: 249 SVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMT 308

Query: 384 -NSCI---------LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
            NS I          +A ++   +       +L  FN L+ GL +  +++ A EL  ++ 
Sbjct: 309 FNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMA 368

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIR--ECLKAIELLHKMAKRYVKP 491
             G +P+  TY+++I G C    +E+A   L +M  +    E +  I LL  M       
Sbjct: 369 SSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMC------ 422

Query: 492 DEITVSILEELLNK-DENC 509
           D+  +    +L N+ D NC
Sbjct: 423 DQGMMGQARDLFNEMDRNC 441



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/454 (25%), Positives = 197/454 (43%), Gaps = 63/454 (13%)

Query: 68  LNDALCFFNYMIH---MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           L+ AL     M H   +   P   S+ +L+ AL   +     + L   +   G+ PD V+
Sbjct: 72  LDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAVGLLRSMQDCGVRPDVVT 131

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
              L+   C    V  A   L  +      P+VV   CL+ G C  G++     +F +  
Sbjct: 132 YGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMS 191

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
                  + P+V+ Y ++ID LC+ G V K   +   M  RG+ P+   YN LI   C  
Sbjct: 192 GR----GIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMC-- 245

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                 +G+   AL+L +       E GV   PDV++Y ++I  L   + +D+A  L  +
Sbjct: 246 -----KEGSVREALDLRKNM----SEKGV--QPDVVTYNTLITGLSSVLEMDEAMALLEE 294

Query: 305 M---KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           M   ++R + PD++ ++S+I G C +G +  A ++   +   GC  +  ++N LI    +
Sbjct: 295 MMQGETR-VRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLR 353

Query: 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
           + KV++A+ L  EM S G++PD+                        ++ L++G CK  +
Sbjct: 354 VHKVKKAMELMDEMASSGLQPDS----------------------FTYSILINGFCKMRQ 391

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------ 469
           +  A     ++   G EP  V Y  ++  +C +G + +A DL  +M+             
Sbjct: 392 VERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEMDRNCKLDAAAYSTM 451

Query: 470 -----KIRECLKAIELLHKMAKRYVKPDEITVSI 498
                K  E   A E L  M    + PD +T SI
Sbjct: 452 IHGAFKSGEKKIAEEFLKDMIDEGLIPDAVTYSI 485



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 157/392 (40%), Gaps = 77/392 (19%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL P+ V+ N+L+N  CK   V +A      +  K   PDVVT   LI GL    +  EA
Sbjct: 229 GLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEA 288

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF------------------------- 211
             L  + +  + R  V P+++ + S+I GLCK G+                         
Sbjct: 289 MALLEEMMQGETR--VRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNL 346

Query: 212 ----------VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261
                     V K   L  +M   G+ PD+F Y+ LI  +C     E A+   S   E+ 
Sbjct: 347 LIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLS---EMR 403

Query: 262 EEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
            + +           P+ + Y  ++ ++C   ++ +A++LF +M  R    D   YS++I
Sbjct: 404 HQGM----------EPEPVHYIPLLKAMCDQGMMGQARDLFNEM-DRNCKLDAAAYSTMI 452

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
            G    G    A +    +  EG IPD  +Y+  IN ++K   +  A  +  +M + G  
Sbjct: 453 HGAFKSGEKKIAEEFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFV 512

Query: 382 PDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR--YGPEP 439
           P                      D+ VF+ L+ G           EL +++       +P
Sbjct: 513 P----------------------DVAVFDSLIQGYGAKGDTEKILELTREMTAKDVALDP 550

Query: 440 NVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI 471
            +++  V   G  IEG  +K    LP  + +I
Sbjct: 551 KIISTIVTSLGASIEG--QKLLQSLPGFDTEI 580



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 134/322 (41%), Gaps = 23/322 (7%)

Query: 63  SGEVELNDALCFFNYMIHMQPT--PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           S  +E+++A+     M+  +    P + +FNS++  L    +    + +   +   G   
Sbjct: 280 SSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRC 339

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           + V+ N+L+    ++  V  A   +  +      PD  T   LI G C   +   A    
Sbjct: 340 NLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYL 399

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
           ++         + P  + Y  ++  +C  G + + R LF +M  R    DA  Y+++I  
Sbjct: 400 SEMR----HQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEMD-RNCKLDAAAYSTMIH- 453

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
                         S   ++ EEF+    + G+I  PD ++Y   IN   K   +  A+ 
Sbjct: 454 ----------GAFKSGEKKIAEEFLKDMIDEGLI--PDAVTYSIPINMFAKSGDLAAAER 501

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           +   M + G +PDV V+ SLI GY   G  +   +L   + ++    D    +T++ S  
Sbjct: 502 VLKQMTASGFVPDVAVFDSLIQGYGAKGDTEKILELTREMTAKDVALDPKIISTIVTSLG 561

Query: 361 ---KIEKVEEALSLYGEMISMG 379
              + +K+ ++L  +   IS G
Sbjct: 562 ASIEGQKLLQSLPGFDTEISKG 583


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 125/526 (23%), Positives = 217/526 (41%), Gaps = 132/526 (25%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142
           P   +  +N +  A AGK                 + P   +  IL+ C C+   +   F
Sbjct: 70  PAAAVSRYNRMARAGAGK-----------------VTPTVHTYAILIGCCCRAGRLDLGF 112

Query: 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL-FTKFVAFDCRPNVI-------- 193
            ALG +++K F  D +T   L++GLC   + ++A  +   +     C P+V         
Sbjct: 113 AALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKG 172

Query: 194 --------------------------PNVICYASIIDGLCKDGFVNKVRVLFLD------ 221
                                     P+V+ Y ++++G  K+G   K+    +D      
Sbjct: 173 LCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVL 232

Query: 222 --MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE--LHEEFVNGNGELGVIC-- 275
             M   G+ PD   YNS++  YC +   ++A G         +    V  +  +  +C  
Sbjct: 233 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKN 292

Query: 276 ------------------HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
                              PD+ +Y +++   CK+  V ++++LF  M   G+ PD++ Y
Sbjct: 293 GRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITY 352

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           ++LIDG CL G++D+A KL  S+ S G  PD  +Y TLIN Y ++ ++++AL+L+ EM+S
Sbjct: 353 NTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVS 412

Query: 378 MGVRPD------------------------------------------------NSCILE 389
            GV P+                                                N+   E
Sbjct: 413 SGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDE 472

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
           A  +F+ L  T  +L+   FN ++  L K  R+  A +LF      G  P+V TY++M  
Sbjct: 473 ALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAE 532

Query: 450 GLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEIT 495
            L  +G +E+  DL   MEE    C     +L+ + ++ ++  +IT
Sbjct: 533 NLIEQGSLEELDDLFLSMEEN--GCSADSRMLNSIVRKLLQRGDIT 576



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 173/386 (44%), Gaps = 30/386 (7%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A+   N M+     P   ++NS+L            I   +++ + G+ P+ V+ + 
Sbjct: 225 MDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSS 284

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           LMN  CK    ++A      + ++   PD+ T   L++G C +G+  E+  LF   V   
Sbjct: 285 LMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMV--- 341

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            R  V P++I Y ++IDG C  G +++   L   M   G+ PD   Y +LI  YC     
Sbjct: 342 -RIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRM 400

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           +D       AL L +E V+          P++++Y  I+  L        AKEL++ +  
Sbjct: 401 DD-------ALALFKEMVSSG------VSPNIITYNIILQGLFHTRRTAAAKELYVSITK 447

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD----TSSYNTLINSYSKIE 363
            G   ++  Y+ ++ G C     D+A ++F ++    C+ D    T ++N +I +  K  
Sbjct: 448 SGTQLELSTYNIILHGLCKNNLTDEALRMFQNL----CLTDLQLETRTFNIMIGALLKCG 503

Query: 364 KVEEALSLYGEMISMGVRPD-NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRL 422
           +++EA  L+    + G+ PD  +  L A  L      +  ELD    +   +G     R+
Sbjct: 504 RMDEAKDLFAAHSANGLVPDVRTYSLMAENLIE--QGSLEELDDLFLSMEENGCSADSRM 561

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMI 448
            ++  + +KL + G      TY  MI
Sbjct: 562 LNS--IVRKLLQRGDITRAGTYLFMI 585



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 132/331 (39%), Gaps = 33/331 (9%)

Query: 51  TKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLS 110
           + L+ YL +N +S E     A   F+ M      P + ++ +LL     +   +    L 
Sbjct: 283 SSLMNYLCKNGRSTE-----ARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLF 337

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           + +  IG+ PD ++ N L++  C    + +A   L  ++     PD+VT G LI G C  
Sbjct: 338 DLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRV 397

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
            +  +A  LF + V+      V PN+I Y  I+ GL         + L++ +   G   +
Sbjct: 398 SRMDDALALFKEMVS----SGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLE 453

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAAL---ELHEEFVNGNGELGVICH----------- 276
              YN +I    C  N  D        L   +L  E    N  +G +             
Sbjct: 454 LSTYN-IILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLF 512

Query: 277 ---------PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
                    PDV +Y  +  +L +   +++  +LFL M+  G   D  + +S++      
Sbjct: 513 AAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQR 572

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
           G I  A      I+ +    + S+ + L+ S
Sbjct: 573 GDITRAGTYLFMIDEKHFSLEASTASFLLES 603


>gi|357155105|ref|XP_003577009.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g13800-like [Brachypodium distachyon]
          Length = 821

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 124/446 (27%), Positives = 191/446 (42%), Gaps = 84/446 (18%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           ++    GL  D V  NI M+ +CK+  + +A   LG ++    SPD +   CLI+G C++
Sbjct: 389 QKFRDSGLHIDGVLYNIAMDAYCKLGNMDEAVKLLGEMMTVGLSPDRIHYTCLIKGYCLK 448

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G    A   F + +    + NV P+V+ Y  +  GL K G V +V  L   M+ RG+ P+
Sbjct: 449 GDIQNARQAFEEML----KANVKPDVVTYNILASGLSKRGLVMEVFDLIGHMEDRGLQPN 504

Query: 231 AFVYNSLIRVYCCAVNWEDA----------------------------KGNTSAALELHE 262
           +  Y  +I  +C   N  +A                            KG T  A  L  
Sbjct: 505 SLTYGVVIDGFCRGDNLSEAEVLFNIVEEKGIDNIEVLYSSMVCGYLHKGWTDNAYVLFL 564

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
             V   G+L      D  S   +I+ LC+D     A  +   M  +  +PD++ YS LI 
Sbjct: 565 R-VAKQGKL-----VDRFSCSKLISDLCRDGNSQGASTVCSTMLEKNDVPDLISYSKLIS 618

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
            YC  G + +AR  F  +   G   D   Y  L+N Y KI  ++EA  L+ +M S+G++P
Sbjct: 619 AYCQTGDMRNARLWFHDMVQRGLPVDVIVYTVLMNGYCKIGLMQEACELFAQMTSLGIKP 678

Query: 383 D---------------------------NSCILEAAE--LFRTLHNTKFELDLTVFNCLV 413
           D                            S +L A +  L  ++   + E D+  +  L+
Sbjct: 679 DIIAYTVLLDGHLKEDLQRRWQGISRDKRSLLLRAKQNRLLSSMKEMEIEPDVPCYTVLI 738

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
           DG CKS  L  A  LF ++ + G  P+   YT +I G C +G + KA DL  +M +K   
Sbjct: 739 DGQCKSDYLEQARGLFDEMLQKGLTPDHYAYTALINGYCSQGEVAKAEDLFQEMVDK--- 795

Query: 474 CLKAIELLHKMAKRYVKPDEITVSIL 499
                          +KPD +T S+L
Sbjct: 796 --------------GIKPDVLTFSVL 807



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 151/357 (42%), Gaps = 30/357 (8%)

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           D  SL I+     +      AF     ++     PDV      I GLC  GK   A  + 
Sbjct: 224 DAHSLRIITRSLFQEKKADKAFKVWVEMIEMGVKPDVHGHSSFIIGLCECGKIDLAYAIL 283

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            + +    R  V    I +  ++DGLCK+  + +V  L  +   +G+ PD + Y+ LIR 
Sbjct: 284 QEII----REKVQVEAIAFNVVMDGLCKEMRLEEVEKLLENKVRQGLTPDIYGYSYLIRS 339

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
           YC         GN    L+ ++  V+   E    CH  ++SY  ++    K  +  +  E
Sbjct: 340 YC-------KVGNLLKVLDHYQAMVSHGLEAN--CH--IMSY--LLQCFTKLGMASQVTE 386

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
            F   +  G+  D V+Y+  +D YC +G +D+A KL   + + G  PD   Y  LI  Y 
Sbjct: 387 YFQKFRDSGLHIDGVLYNIAMDAYCKLGNMDEAVKLLGEMMTVGLSPDRIHYTCLIKGYC 446

Query: 361 KIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLT 407
               ++ A   + EM+   V+PD                ++E  +L   + +   + +  
Sbjct: 447 LKGDIQNARQAFEEMLKANVKPDVVTYNILASGLSKRGLVMEVFDLIGHMEDRGLQPNSL 506

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            +  ++DG C+   L  A  LF  +   G +   V Y+ M+CG   +G  + AY L 
Sbjct: 507 TYGVVIDGFCRGDNLSEAEVLFNIVEEKGIDNIEVLYSSMVCGYLHKGWTDNAYVLF 563



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 119/271 (43%), Gaps = 11/271 (4%)

Query: 90  FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149
           ++S++     K +  N   L  R+   G L D  S + L++  C+      A      +L
Sbjct: 543 YSSMVCGYLHKGWTDNAYVLFLRVAKQGKLVDRFSCSKLISDLCRDGNSQGASTVCSTML 602

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD 209
            K   PD+++   LI   C  G    A   F   V    +  +  +VI Y  +++G CK 
Sbjct: 603 EKNDVPDLISYSKLISAYCQTGDMRNARLWFHDMV----QRGLPVDVIVYTVLMNGYCKI 658

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC---CAVNWEDAKGNTSAAL--ELHEEF 264
           G + +   LF  M   GI PD   Y  L+  +        W+    +  + L        
Sbjct: 659 GLMQEACELFAQMTSLGIKPDIIAYTVLLDGHLKEDLQRRWQGISRDKRSLLLRAKQNRL 718

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           ++   E+ +   PDV  Y  +I+  CK   +++A+ LF +M  +G+ PD   Y++LI+GY
Sbjct: 719 LSSMKEMEI--EPDVPCYTVLIDGQCKSDYLEQARGLFDEMLQKGLTPDHYAYTALINGY 776

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           C  G +  A  LF  +  +G  PD  +++ L
Sbjct: 777 CSQGEVAKAEDLFQEMVDKGIKPDVLTFSVL 807



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 123/302 (40%), Gaps = 67/302 (22%)

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           D  S   I  SL ++   DKA +++++M   G+ PDV  +SS I G C  G+ID A  + 
Sbjct: 224 DAHSLRIITRSLFQEKKADKAFKVWVEMIEMGVKPDVHGHSSFIIGLCECGKIDLAYAIL 283

Query: 338 -------VSIES----------------------------EGCIPDTSSYNTLINSYSKI 362
                  V +E+                            +G  PD   Y+ LI SY K+
Sbjct: 284 QEIIREKVQVEAIAFNVVMDGLCKEMRLEEVEKLLENKVRQGLTPDIYGYSYLIRSYCKV 343

Query: 363 EKVEEALSLYGEMISMGVRPDNSCIL--------------EAAELFRTLHNTKFELDLTV 408
             + + L  Y  M+S G+   N  I+              +  E F+   ++   +D  +
Sbjct: 344 GNLLKVLDHYQAMVSHGLEA-NCHIMSYLLQCFTKLGMASQVTEYFQKFRDSGLHIDGVL 402

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +N  +D  CK   +  A +L  ++   G  P+ + YT +I G C++G I+ A        
Sbjct: 403 YNIAMDAYCKLGNMDEAVKLLGEMMTVGLSPDRIHYTCLIKGYCLKGDIQNAR------- 455

Query: 469 EKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESK 528
                     +   +M K  VKPD +T +IL   L+K     E  +L+     R  + + 
Sbjct: 456 ----------QAFEEMLKANVKPDVVTYNILASGLSKRGLVMEVFDLIGHMEDRGLQPNS 505

Query: 529 LT 530
           LT
Sbjct: 506 LT 507



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 20/147 (13%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCK------MIGVSDAFVAL------GRILRKV---- 152
           L  ++ ++G+ PD ++  +L++   K        G+S    +L       R+L  +    
Sbjct: 667 LFAQMTSLGIKPDIIAYTVLLDGHLKEDLQRRWQGISRDKRSLLLRAKQNRLLSSMKEME 726

Query: 153 FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFV 212
             PDV     LI G C      +A GLF + +    +  + P+   Y ++I+G C  G V
Sbjct: 727 IEPDVPCYTVLIDGQCKSDYLEQARGLFDEML----QKGLTPDHYAYTALINGYCSQGEV 782

Query: 213 NKVRVLFLDMKGRGIYPDAFVYNSLIR 239
            K   LF +M  +GI PD   ++ L R
Sbjct: 783 AKAEDLFQEMVDKGIKPDVLTFSVLNR 809


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 109/362 (30%), Positives = 174/362 (48%), Gaps = 57/362 (15%)

Query: 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV 215
           + V+   ++  LC  GK  EA  L    +  + R NV P+V+ Y+ I+DG C+   + KV
Sbjct: 251 NTVSYNIILHLLCQLGKVKEAHSLL---IQMEFRGNV-PDVVSYSVIVDGYCQVEQLGKV 306

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
             L  +++ +G+ P+ + YNS+I   C         G    A ++     N         
Sbjct: 307 LKLMEELQRKGLKPNQYTYNSIISFLC-------KTGRVVEAEQVLRVMKNQR------I 353

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
            PD + Y ++I+   K   V    +LF +MK + I+PD V Y+S+I G C  G++ +ARK
Sbjct: 354 FPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARK 413

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395
           LF  + S+G  PD  +Y  LI+ Y K  +++EA SL+ +M+  G+ P             
Sbjct: 414 LFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTP------------- 460

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
                    ++  +  LVDGLCK   +  A EL  ++   G +PNV TY  +I GLC  G
Sbjct: 461 ---------NVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVG 511

Query: 456 GIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVS 497
            IE+A  L+ +M+                   K+ E  KA ELL  M  + ++P  +T +
Sbjct: 512 NIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFN 571

Query: 498 IL 499
           +L
Sbjct: 572 VL 573



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 166/350 (47%), Gaps = 39/350 (11%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           ++PDFV+   +++  C+   V +A      +L K   PD VT   LI G C  G+  EA 
Sbjct: 388 IVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAF 447

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            L  + V       + PNV+ Y +++DGLCK G V+    L  +M  +G+ P+   YN+L
Sbjct: 448 SLHNQMV----EKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNAL 503

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           I   C         GN   A++L EE      +L     PD ++Y +I+++ CK   + K
Sbjct: 504 INGLCKV-------GNIEQAVKLMEEM-----DLAGF-FPDTITYTTIMDAYCKMGEMAK 550

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A EL   M  +G+ P +V ++ L++G+C+ G ++D  +L   +  +G +P+ +++N+L+ 
Sbjct: 551 AHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMK 610

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
            Y     +   + +Y  M + GV PD +                       +N L+ G C
Sbjct: 611 QYCIRNNMRATIEIYKGMHAQGVVPDTN----------------------TYNILIKGHC 648

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           K+  ++ AW L K++   G      +Y  +I G       E+A  L  +M
Sbjct: 649 KARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEM 698



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 103/419 (24%), Positives = 187/419 (44%), Gaps = 44/419 (10%)

Query: 57  LSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           +S   KSG V +   L  F+ M   +  P   ++ S++  L      V    L   + + 
Sbjct: 364 ISGFGKSGNVSVEYKL--FDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSK 421

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL PD V+   L++ +CK   + +AF    +++ K  +P+VVT   L+ GLC  G+   A
Sbjct: 422 GLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIA 481

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
           + L  +         + PNV  Y ++I+GLCK G + +   L  +M   G +PD   Y +
Sbjct: 482 NELLHEM----SEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTT 537

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           ++  YC         G  + A EL    ++          P ++++  ++N  C   +++
Sbjct: 538 IMDAYC-------KMGEMAKAHELLRIMLDKG------LQPTIVTFNVLMNGFCMSGMLE 584

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
             + L   M  +GI+P+   ++SL+  YC+   +    +++  + ++G +PDT++YN LI
Sbjct: 585 DGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILI 644

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
             + K   ++EA  L+ EM+  G                      F L    +N L+ G 
Sbjct: 645 KGHCKARNMKEAWFLHKEMVEKG----------------------FSLTAASYNSLIKGF 682

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL 475
            K  +   A +LF+++  +G       Y + +     EG  E   +L    +E I +CL
Sbjct: 683 YKRKKFEEARKLFEEMRTHGFIAEKEIYDIFVDVNYEEGNWENTLELC---DEAIEKCL 738



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 157/341 (46%), Gaps = 54/341 (15%)

Query: 178 GLFTKFVAFD--CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
           G+ T F  F       V  N + Y  I+  LC+ G V +   L + M+ RG  PD   Y+
Sbjct: 232 GIRTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYS 291

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
            ++  YC               L+L EE             P+  +Y SII+ LCK   V
Sbjct: 292 VIVDGYCQV-------EQLGKVLKLMEELQRKG------LKPNQYTYNSIISFLCKTGRV 338

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
            +A+++   MK++ I PD VVY++LI G+   G +    KLF  ++ +  +PD  +Y ++
Sbjct: 339 VEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSM 398

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDG 415
           I+   +  KV EA  L+ EM+S G++PD                         +  L+DG
Sbjct: 399 IHGLCQAGKVVEARKLFSEMLSKGLKPDE----------------------VTYTALIDG 436

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL 475
            CK+  ++ A+ L  ++   G  PNVVTYT ++ GLC  G ++ A               
Sbjct: 437 YCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIAN-------------- 482

Query: 476 KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
              ELLH+M+++ ++P+  T + L   L K  N  + + L+
Sbjct: 483 ---ELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLM 520


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/403 (27%), Positives = 189/403 (46%), Gaps = 39/403 (9%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            +++ +  F  M      P + ++  ++ AL G    +  + L   +      P+  +  
Sbjct: 299 RIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYT 358

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           ++++  CK   + ++   L  ++ K   P VVT   LIRG C +G+   A  +     + 
Sbjct: 359 VMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESN 418

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           +CRPN       Y  +I G  K   V+K   L   M    + P    YNSLI V C A +
Sbjct: 419 NCRPNER----TYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGH 474

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
           ++ A       L+L +E    NG +     PD  +Y   I++LCK   +++A +LF  +K
Sbjct: 475 FDSA----YKLLDLLKE----NGLV-----PDQWTYSVFIDTLCKSKRMEEACDLFNSLK 521

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            +GI  + V+Y++LIDG+C  G+ID+A  L   + SE C+P++S+YN+LI    K  KV+
Sbjct: 522 EKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQ 581

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           E LS+   M  MGV+P                       +  +  L++ + +      A 
Sbjct: 582 EGLSMVENMSKMGVKP----------------------TVATYTILIEEMLREGDFDHAN 619

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
            +F ++  +G +P+V TYT  I   C  G +++A  ++  M E
Sbjct: 620 RVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIE 662



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/437 (24%), Positives = 185/437 (42%), Gaps = 57/437 (13%)

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           +  M++    P + + N+++ A +     V       ++   GL PD  +   L+  +C+
Sbjct: 202 YTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCR 261

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI- 193
              V+ A+     +  K    + V+   +I GLC  G+  E   LF K    DC P V  
Sbjct: 262 NNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRT 321

Query: 194 ------------------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
                                         PNV  Y  ++D +CK+  +++ R +  +M 
Sbjct: 322 YTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMM 381

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
            +G+ P    YN+LIR YC        +G   AALE+     + N      C P+  +Y 
Sbjct: 382 EKGLVPSVVTYNALIRGYC-------EEGRIEAALEILGLMESNN------CRPNERTYN 428

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
            +I    K   V KA  L   M    + P +V Y+SLI   C  G  D A KL   ++  
Sbjct: 429 ELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKEN 488

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC----ILEA 390
           G +PD  +Y+  I++  K +++EEA  L+  +   G++          D  C    I EA
Sbjct: 489 GLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEA 548

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
             L   +H+     + + +N L+ G+CK  +++    + + + + G +P V TYT++I  
Sbjct: 549 ISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEE 608

Query: 451 LCIEGGIEKAYDLLPDM 467
           +  EG  + A  +   M
Sbjct: 609 MLREGDFDHANRVFNQM 625



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 127/296 (42%), Gaps = 17/296 (5%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N L+   + +K+    + L  ++    L P  V+ N L++  CK      A+  L  +
Sbjct: 426 TYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLL 485

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
                 PD  T    I  LC   +  EA  LF           +  N + Y ++IDG CK
Sbjct: 486 KENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLK----EKGIKANEVMYTALIDGHCK 541

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
            G +++   L   M      P++  YNSLI   C        +G     L + E      
Sbjct: 542 AGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVC-------KEGKVQEGLSMVENM---- 590

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
            ++GV   P V +Y  +I  + ++   D A  +F  M S G  PDV  Y++ I  YC  G
Sbjct: 591 SKMGV--KPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSG 648

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
            + +A  +   +   G +PD+ +Y  LI++Y ++    +A ++   M+  G  P +
Sbjct: 649 NVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKRMLDAGCDPSH 704



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 148/336 (44%), Gaps = 57/336 (16%)

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           +V  Y  ++  L +   +++++ ++ +M    I P+ +  N+++  Y    N  +A    
Sbjct: 178 SVRSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEAN--- 234

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
              L + + F  G         PD  +Y S+I   C++  V+ A ++F  M ++G   + 
Sbjct: 235 ---LYVSKIFQAG-------LSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNE 284

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           V Y+++I G C  GRID+   LF  +  + C P   +Y  +I+            +L+G 
Sbjct: 285 VSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIH------------ALFG- 331

Query: 375 MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
                    N   LE  +LF  +     E ++  +  +VD +CK  +L  +  +  ++  
Sbjct: 332 ---------NDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMME 382

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEI 494
            G  P+VVTY  +I G C EG IE                  A+E+L  M     +P+E 
Sbjct: 383 KGLVPSVVTYNALIRGYCEEGRIE-----------------AALEILGLMESNNCRPNER 425

Query: 495 TVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           T + L    +K ++ H+ M LL   L     ESKLT
Sbjct: 426 TYNELICGFSKRKHVHKAMTLLSKML-----ESKLT 456



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 129/294 (43%), Gaps = 17/294 (5%)

Query: 63  SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF 122
           S    ++ A+   + M+  + TP + ++NSL+       ++ +   L + L   GL+PD 
Sbjct: 435 SKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQ 494

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
            + ++ ++  CK   + +A      +  K    + V    LI G C  GK  EA  L  +
Sbjct: 495 WTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLER 554

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
             + DC    +PN   Y S+I G+CK+G V +   +  +M   G+ P    Y  LI    
Sbjct: 555 MHSEDC----LPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEML 610

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
                   +G+   A  +  + V+   +      PDV +Y + I++ C    V +A+ + 
Sbjct: 611 -------REGDFDHANRVFNQMVSFGHK------PDVYTYTAFIHTYCTSGNVKEAEGMM 657

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
             M   G++PD + Y+ LI  Y  +G   DA  +   +   GC P    +N LI
Sbjct: 658 ARMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKRMLDAGCDPSHPIWNNLI 711


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 119/448 (26%), Positives = 209/448 (46%), Gaps = 60/448 (13%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
            + G+VE  +AL     M  M   P + S+N L+  L         + + + +   GL P
Sbjct: 388 GRKGKVE--EALRILEAM-KMDAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFP 444

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           + +++NI+++  CK   + +A      +  KV +PD VT   LI GL   GK  +A  L+
Sbjct: 445 NIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLY 504

Query: 181 TKFVAFDCRPNVI-------------------------------PNVICYASIIDGLCKD 209
            K +     PN +                               P+++   + +D + K 
Sbjct: 505 EKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKA 564

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
           G + K R LF ++K +G+ PD   Y+ LI      V    +K       E+ E+ +    
Sbjct: 565 GEIEKGRALFEEIKAQGLTPDVRSYSILIH---GLVKGGFSKDTYKLFYEMKEQGL---- 617

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
                 H D  +Y  +I+  CK   V+KA +L  +MK++G+ P VV Y S+IDG   + R
Sbjct: 618 ------HLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDR 671

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---SC 386
           +D+A  LF   +S+    +   Y++LI+ + K+ +++EA  +  E++  G+ P+    +C
Sbjct: 672 LDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNC 731

Query: 387 IL----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
           +L          EA   F+ + N K   +   ++ +V+GLCK  +   A+  ++++ + G
Sbjct: 732 LLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQG 791

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            +PN +TYT MI GL   G + +A DL 
Sbjct: 792 LKPNTITYTTMISGLARVGNVLEAKDLF 819



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 112/423 (26%), Positives = 198/423 (46%), Gaps = 33/423 (7%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
            K G+V++  A  FF+ +      P   +F S++G L   +     + L E L++   +P
Sbjct: 283 GKVGKVDM--AWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVP 340

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
              + N ++  +  +   ++A+  L R  RK   P V+   C++  L  +GK  EA  + 
Sbjct: 341 CVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIL 400

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
                   + +  PN+  Y  +ID LCK G +     +   MK  G++P+    N +I  
Sbjct: 401 EAM-----KMDAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDR 455

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
            C A   ++A    S  L L  +          +C PD +++CS+I+ L +   V+ A  
Sbjct: 456 LCKAQRLDEA---CSIFLGLDHK----------VCTPDSVTFCSLIDGLGRHGKVNDAYM 502

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           L+  M   G  P+ VVY+SLI  +   GR +D  K++  +   GC PD    N  ++   
Sbjct: 503 LYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVF 562

Query: 361 KIEKVEEALSLYGEMISMGVRPD--NSCIL-----------EAAELFRTLHNTKFELDLT 407
           K  ++E+  +L+ E+ + G+ PD  +  IL           +  +LF  +      LD  
Sbjct: 563 KAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTR 622

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            +N ++DG CKS ++  A++L +++   G +P VVTY  +I GL     +++AY L  + 
Sbjct: 623 AYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEA 682

Query: 468 EEK 470
           + K
Sbjct: 683 KSK 685



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 156/322 (48%), Gaps = 23/322 (7%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+GE+E   AL  F  +     TP + S++ L+  L    +  +   L   +   GL  D
Sbjct: 563 KAGEIEKGRAL--FEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLD 620

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF- 180
             + NI+++ FCK   V+ A+  L  +  K   P VVT G +I GL    +  EA  LF 
Sbjct: 621 TRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFE 680

Query: 181 -TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             K  A D       NV+ Y+S+IDG  K G +++  ++  ++  +G+ P+ + +N L+ 
Sbjct: 681 EAKSKAVDL------NVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLL- 733

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
                    DA      A E+ E  V       + C P+ ++Y  ++N LCK    +KA 
Sbjct: 734 ---------DA---LVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAF 781

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
             + +M+ +G+ P+ + Y+++I G   +G + +A+ LF   +S G IPD++ YN +I   
Sbjct: 782 VFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFERFKSSGGIPDSACYNAMIEGL 841

Query: 360 SKIEKVEEALSLYGEMISMGVR 381
           S   K  +A  L+ E    G R
Sbjct: 842 SNANKAMDAYILFEETRLKGCR 863



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 111/466 (23%), Positives = 204/466 (43%), Gaps = 53/466 (11%)

Query: 90  FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149
           F +L+   A +      + L + + +     D V  N+ ++CF K+  V  A+     + 
Sbjct: 240 FTTLICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELK 299

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD 209
            +   PD VT   +I  LC   +  EA  LF +    D   +V P V  Y ++I G    
Sbjct: 300 SQGLVPDDVTFTSMIGVLCKAERVDEAVELFEEL---DSNKSV-PCVYAYNTMIMGYGSV 355

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
           G  N+   L    K +G  P    YN       C +     KG    AL + E       
Sbjct: 356 GKFNEAYSLLERQKRKGCIPSVIAYN-------CILTCLGRKGKVEEALRILEA------ 402

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
            + +   P++ SY  +I+ LCK   ++ A ++   MK  G+ P+++  + +ID  C   R
Sbjct: 403 -MKMDAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQR 461

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL- 388
           +D+A  +F+ ++ + C PD+ ++ +LI+   +  KV +A  LY +M+  G  P N+ +  
Sbjct: 462 LDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTP-NAVVYT 520

Query: 389 -------------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
                        +  ++++ + +     DL + N  +D + K+  +     LF+++   
Sbjct: 521 SLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQ 580

Query: 436 GPEPNVVTYTVMICGLCIEGGIEK-AYDLLPDMEE------------------KIRECLK 476
           G  P+V +Y+++I GL ++GG  K  Y L  +M+E                  K  +  K
Sbjct: 581 GLTPDVRSYSILIHGL-VKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNK 639

Query: 477 AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
           A +LL +M  + ++P  +T   + + L K +   E   L     S+
Sbjct: 640 AYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK 685



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 173/396 (43%), Gaps = 66/396 (16%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIGLLPDFVS 124
           ++NDA   +  M+    TP    + SL+      G+K   + I   + +   G  PD + 
Sbjct: 496 KVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKI--YKEMMHRGCSPDLML 553

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF- 183
           LN  M+C  K   +         I  +  +PDV +   LI GL   G   +   LF +  
Sbjct: 554 LNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMK 613

Query: 184 ---VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI-- 238
              +  D R         Y  +IDG CK G VNK   L  +MK +G+ P    Y S+I  
Sbjct: 614 EQGLHLDTR--------AYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDG 665

Query: 239 -----RVYCCAVNWEDAKGNTSAALEL----HEEFVNGNGELGVI--------------C 275
                R+    + +E+AK   S A++L    +   ++G G++G I               
Sbjct: 666 LAKIDRLDEAYMLFEEAK---SKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGL 722

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
            P+  ++  ++++L K   +D+A   F +MK+    P+ V YS +++G C + + + A  
Sbjct: 723 TPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFV 782

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395
            +  ++ +G  P+T +Y T+I+  +++  V EA  L+    S G  PD++C         
Sbjct: 783 FWQEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFERFKSSGGIPDSAC--------- 833

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
                        +N +++GL  + +   A+ LF++
Sbjct: 834 -------------YNAMIEGLSNANKAMDAYILFEE 856



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 175/407 (42%), Gaps = 51/407 (12%)

Query: 71  ALCFFNYMIHMQPTPFMP-SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           AL +F ++         P ++N+LL  +A  +       + E ++  G  P   +   ++
Sbjct: 115 ALHYFRWVERKTKQLHSPEAYNALLMLMARTRNLEYLEQILEEMSMAGFGPSNNTCIEMV 174

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT-----KFV 184
             F K   + +AF  +  + +  F P       LI  L       EA  + T     + +
Sbjct: 175 ASFVKSRKLREAFGVIETMRKFKFRPAYSAYTTLIGALSAA---HEADPMLTLLRQMQEI 231

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
            ++   ++   +IC         ++G V+    L  +MK      D  +YN  I  +   
Sbjct: 232 GYEVTVHLFTTLICV------FAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCF--- 282

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                        +++  +F +     G++  PD +++ S+I  LCK   VD+A ELF +
Sbjct: 283 --------GKVGKVDMAWKFFHELKSQGLV--PDDVTFTSMIGVLCKAERVDEAVELFEE 332

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           + S   +P V  Y+++I GY  +G+ ++A  L    + +GCIP   +YN ++    +  K
Sbjct: 333 LDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGK 392

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
           VEEAL +  E + M   P                      +LT +N L+D LCK+  L +
Sbjct: 393 VEEALRIL-EAMKMDAAP----------------------NLTSYNILIDMLCKAGELEA 429

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI 471
           A ++   +   G  PN++T  +MI  LC    +++A  +   ++ K+
Sbjct: 430 ALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKV 476


>gi|218191262|gb|EEC73689.1| hypothetical protein OsI_08260 [Oryza sativa Indica Group]
          Length = 595

 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 124/431 (28%), Positives = 202/431 (46%), Gaps = 42/431 (9%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +N+A+   N M     TP    +  L+     K    N   + E +    + PD V+ NI
Sbjct: 121 MNEAVKLLNEMKCGGLTPDKIHYTCLINGYCLKGEMQNAQQVFEEMLKANIEPDIVTYNI 180

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L + FCK   V + F  L R+  +   P+ +T G  I G C  G  +EA  LF       
Sbjct: 181 LASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRGGNLSEAEVLFNVV---- 236

Query: 188 CRPNVIPNV-ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                I ++ + Y+S++ G    G+ +   +LF+ +  +G   D F  + LI   C   N
Sbjct: 237 -EEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLINDLCRVGN 295

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            + A       LE +           V+  PDV+SY  +I+  C++  +DKA   F DM 
Sbjct: 296 VQGASNVCKIMLEHN-----------VV--PDVISYSKLISIYCQNGDMDKAHLWFHDMV 342

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            RG+  DV+VY+ L++GYC  GR+ +A +LFV + + G  PD  +Y  L++ + K    +
Sbjct: 343 QRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQ 402

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
               +  E  S  +R +++      +L  ++ + + E D+  +  L+DG CK+  L  A 
Sbjct: 403 GWEGIAKERRSFLLRANHN------KLLSSMKDMQIEPDVPCYTVLIDGKCKAEYLVEAR 456

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAK 486
           ELF ++ + G  P+   YT +I G C +G I KA DLL +M +K                
Sbjct: 457 ELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDK---------------- 500

Query: 487 RYVKPDEITVS 497
             ++PDE+T S
Sbjct: 501 -GIEPDELTFS 510



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 167/401 (41%), Gaps = 80/401 (19%)

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           ++ N++M+  CK + + +A   L    R+  +PDV     LI+  C  G   +A   +  
Sbjct: 1   MAYNMVMDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIQSYCKMGNLIKAVDHYEA 60

Query: 183 FVAFDCRPN-------------------VIP------------NVICYASIIDGLCKDGF 211
            V+     N                   VI             + + Y   +D  CK+G 
Sbjct: 61  MVSHGIETNCHIVSYLLQCFRKLGMTSEVIAYFLKFKDSGLHLDKVIYNIAMDTYCKNGN 120

Query: 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGEL 271
           +N+   L  +MK  G+ PD   Y  LI  YC        KG    A ++ EE +  N E 
Sbjct: 121 MNEAVKLLNEMKCGGLTPDKIHYTCLINGYCL-------KGEMQNAQQVFEEMLKANIEP 173

Query: 272 GVICH-----------------------------PDVLSYCSIINSLCKDVLVDKAKELF 302
            ++ +                             P+ L+Y   I   C+   + +A+ LF
Sbjct: 174 DIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRGGNLSEAEVLF 233

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
             ++ +GI    V+YSS++ GY L G  D A  LFV +  +G + D  S + LIN   ++
Sbjct: 234 NVVEEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLINDLCRV 293

Query: 363 EKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVF 409
             V+ A ++   M+   V PD             N  + +A   F  +      +D+ V+
Sbjct: 294 GNVQGASNVCKIMLEHNVVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQRGLSIDVIVY 353

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
             L++G CK+ RL+ A +LF ++   G +P+V+ YTV++ G
Sbjct: 354 TILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDG 394



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 125/274 (45%), Gaps = 35/274 (12%)

Query: 197 ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSA 256
           + Y  ++DGLCK+  +++   L  +   +G  PD + Y+ LI+ YC         GN   
Sbjct: 1   MAYNMVMDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIQSYC-------KMGNLIK 53

Query: 257 ALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV 316
           A++ +E  V+   E    CH  ++SY  ++    K  +  +    FL  K  G+  D V+
Sbjct: 54  AVDHYEAMVSHGIETN--CH--IVSY--LLQCFRKLGMTSEVIAYFLKFKDSGLHLDKVI 107

Query: 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
           Y+  +D YC  G +++A KL   ++  G  PD   Y  LIN Y    +++ A  ++ EM+
Sbjct: 108 YNIAMDTYCKNGNMNEAVKLLNEMKCGGLTPDKIHYTCLINGYCLKGEMQNAQQVFEEML 167

Query: 377 SMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
              + P                      D+  +N L  G CKS  +   ++L  ++   G
Sbjct: 168 KANIEP----------------------DIVTYNILASGFCKSGLVMEVFDLLDRMADQG 205

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            EPN +TY + I G C  G + +A  L   +EEK
Sbjct: 206 LEPNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEK 239



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 96/219 (43%), Gaps = 33/219 (15%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           ++PD +S + L++ +C+   +  A +    ++++  S DV+    L+ G C  G+  EA 
Sbjct: 311 VVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQRGLSIDVIVYTILMNGYCKAGRLQEAC 370

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF------VNKVRVLFL----------D 221
            LF +      +P+VI     Y  ++DG  K+        + K R  FL           
Sbjct: 371 QLFVQMTNLGIKPDVIA----YTVLLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSS 426

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
           MK   I PD   Y  LI   C A    +A+       EL +E +           PD  +
Sbjct: 427 MKDMQIEPDVPCYTVLIDGKCKAEYLVEAR-------ELFDEMLQKG------LTPDAYA 473

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
           Y ++IN  C    + KA++L  +M  +GI PD + +S +
Sbjct: 474 YTALINGYCSQGEISKAEDLLQEMIDKGIEPDELTFSEV 512


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 108/352 (30%), Positives = 168/352 (47%), Gaps = 42/352 (11%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ +S  I+++  CK   V  A     +++ K   PDVVT G LI GL  Q +  EA  L
Sbjct: 203 PNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDL 262

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM-KGRGIYPDAFVYNSLI 238
           F +  A  C     P V+ Y ++IDGLCK G +     L+ DM +   + PD F Y++LI
Sbjct: 263 FEEARAKGCH----PTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALI 318

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
                  N  +       A EL+EE ++        C PDV++Y ++++ LCK    DKA
Sbjct: 319 -------NGLNLSNRGEKAYELYEEMLDTG------CSPDVVTYNTLLDGLCKSGCEDKA 365

Query: 299 KELFLDMKSRGII-PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
            E+F  M    +  P+V+ Y+ LID +C + R+ DA KL   +E    +PD  ++ T+I 
Sbjct: 366 MEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQ 425

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
              K  +++EA  L+ E I    +PD+                       +FN ++ G C
Sbjct: 426 KLCKESRIDEAHELF-ESIGKTCKPDS----------------------VLFNTMLAGYC 462

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           K  R+  A +L  ++   G  P + TYT ++ G C  G    A  +  +M E
Sbjct: 463 KITRIDDAKKLHDRMLDSGCAPTLATYTALVTGFCRTGRYSDALIMYHEMIE 514



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/340 (30%), Positives = 165/340 (48%), Gaps = 47/340 (13%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P+ + Y ++++G  K G V K   LF +MK  GI        +++R +   +    + G 
Sbjct: 135 PDEVSYNTLMNGFFKAGDVKKALALFGEMKDSGI--------AVLRSHNIVLRGLCSGGK 186

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
            S A E+ ++       +  I  P+++SY  +I+ LCK   VDKA  LF  M  + I PD
Sbjct: 187 ISMAWEVFKD-------MSGIFSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPD 239

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           VV Y +LIDG     R+ +A  LF    ++GC P   +YNT+I+   K  ++E AL+LY 
Sbjct: 240 VVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYD 299

Query: 374 EMISM-GVRPD--------NSCIL-----EAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
           +M+    ++PD        N   L     +A EL+  + +T    D+  +N L+DGLCKS
Sbjct: 300 DMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKS 359

Query: 420 WRLRSAWELFKKLPRYGP-EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAI 478
                A E+F+K+      +PNV+TYTV+I   C                 K+     A+
Sbjct: 360 GCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFC-----------------KVDRLGDAV 402

Query: 479 ELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPS 518
           +L  +M  R + PD +T + + + L K+    E   L  S
Sbjct: 403 KLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFES 442



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 163/334 (48%), Gaps = 21/334 (6%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +++ A+  F  M+     P + ++ +L+  L  ++       L E     G  P  V+ N
Sbjct: 220 KVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYN 279

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKV-FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
            +++  CK   + +A      ++R+    PD+ T   LI GL +  +  +A  L+ + + 
Sbjct: 280 TMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLD 339

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK-GRGIYPDAFVYNSLIRVYCCA 244
             C P+V+     Y +++DGLCK G  +K   +F  M  G    P+   Y  LI  +C  
Sbjct: 340 TGCSPDVV----TYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKV 395

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
               DA       ++L +E + G   L     PD +++ ++I  LCK+  +D+A ELF  
Sbjct: 396 DRLGDA-------VKLAKE-MEGRSLL-----PDAVTFTTVIQKLCKESRIDEAHELFES 442

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           +  +   PD V++++++ GYC + RIDDA+KL   +   GC P  ++Y  L+  + +  +
Sbjct: 443 I-GKTCKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTGFCRTGR 501

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398
             +AL +Y EMI MG  P+   + E  +  RT H
Sbjct: 502 YSDALIMYHEMIEMGFPPERH-LAELVDRTRTDH 534



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 161/356 (45%), Gaps = 38/356 (10%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           +P + S+  ++  L   +     I L +++    + PD V+   L++   K   V +A+ 
Sbjct: 202 SPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYD 261

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
                  K   P VVT   +I GLC  G+   A  L+   V     P++ P++  Y+++I
Sbjct: 262 LFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVR---EPHLKPDMFTYSALI 318

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
           +GL       K   L+ +M   G  PD   YN+L+   C         G    A+E+  +
Sbjct: 319 NGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLC-------KSGCEDKAMEIFRK 371

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
              GN     +C P+V++Y  +I+  CK   +  A +L  +M+ R ++PD V ++++I  
Sbjct: 372 MGVGN-----VCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQK 426

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            C   RID+A +LF SI  + C PD+  +NT++  Y KI ++++A  L+  M+  G  P 
Sbjct: 427 LCKESRIDEAHELFESI-GKTCKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAP- 484

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
                                 L  +  LV G C++ R   A  ++ ++   G  P
Sbjct: 485 ---------------------TLATYTALVTGFCRTGRYSDALIMYHEMIEMGFPP 519



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 85/165 (51%), Gaps = 13/165 (7%)

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           ++L+  Y    R++DA   F S       PD  SYNTL+N + K   V++AL+L+GEM  
Sbjct: 106 NNLLSVYVKARRVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGEMKD 165

Query: 378 MGV---RPDN---------SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
            G+   R  N           I  A E+F+ +    F  +L  +  ++DGLCKS ++  A
Sbjct: 166 SGIAVLRSHNIVLRGLCSGGKISMAWEVFKDMSGI-FSPNLISYTIMIDGLCKSRKVDKA 224

Query: 426 WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
             LFK++      P+VVTY  +I GL  +  +++AYDL  +   K
Sbjct: 225 ITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAK 269


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 122/477 (25%), Positives = 209/477 (43%), Gaps = 82/477 (17%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G ++L  A   F+ M+     P   ++++L+  L  +      + + E +   G+ P 
Sbjct: 249 KNGNLDL--AFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPT 306

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             +  I +   C      +A   LG++ ++   P+V T   LI GL   GKF  A G++ 
Sbjct: 307 VHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYH 366

Query: 182 KFVAFDCRPNVI-------------------------------PNVICYASIIDGLCKDG 210
           K +A    P  +                               PN   Y  II G C  G
Sbjct: 367 KMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIG 426

Query: 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGE 270
           ++ K   +F  M   G  P+   YN +I +Y         +G  + A+ L  E + GNG 
Sbjct: 427 YIQKATAIFDQMLKAGPSPNVITYNIIIHIYF-------KQGYMNNAMRL-LEMMKGNG- 477

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
                  D  +Y ++I+   +   ++ A  LF +M   GI P+VV Y+++I+GY  + ++
Sbjct: 478 ----LKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKV 533

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEA 390
           DDA  LF  +   G +P + +YN +I+ +SK  ++ EA +  G+M+  G+ P        
Sbjct: 534 DDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLP-------- 585

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
                         ++  +   +DGLCK+ R   A+++F ++ +    PN+ TY+ +I G
Sbjct: 586 --------------NVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDG 631

Query: 451 LCIEGGIEKAYDLLPDMEEK--------IR------ECLKAIELLHKMAKRYVKPDE 493
           LC EG  E A  LL D  E         +R       C +A +L+  M K+ ++P E
Sbjct: 632 LCQEGQAEDAERLLDDGCEPNVDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSE 688



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/401 (25%), Positives = 179/401 (44%), Gaps = 44/401 (10%)

Query: 89  SFNSLLGALA-------GKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDA 141
           SF++LL  L        G+  Y+      E LN+ G+ P+  + N ++   C    V +A
Sbjct: 169 SFSTLLIQLGKFDMDGLGRDVYI------EMLNS-GIRPNLFTFNAMIKILCNKGKVQEA 221

Query: 142 FVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYAS 201
            + +G I      PD  T   LI G C  G    A  +F + V   C     PN + Y++
Sbjct: 222 ELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCD----PNSVTYSA 277

Query: 202 IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261
           +I+GLC +G + +   +  +M  +GI P    Y   I   C A       G +  A++L 
Sbjct: 278 LINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDA-------GRSCEAVKLL 330

Query: 262 EEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
            +           C P+V +Y ++I+ L +D   + A  ++  M + G++P  V YS+LI
Sbjct: 331 GKMKKRG------CGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALI 384

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
           +   + GR + A  +F  + S   +P+T +YN +I  +  I  +++A +++ +M+  G  
Sbjct: 385 NQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPS 444

Query: 382 PD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
           P+                +  A  L   +     +LD   +  L+ G  +  +L  A+ L
Sbjct: 445 PNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSL 504

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           F ++  +G  PNVVTY  +I G      ++ A  L   M E
Sbjct: 505 FNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVE 545



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 175/403 (43%), Gaps = 43/403 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +  A   F+ M+   P+P + ++N ++     + Y  N + L E +   GL  D  +   
Sbjct: 428 IQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYAN 487

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++ F +   +  AF     ++    SP+VVT   +I G     K  +A  LF K V   
Sbjct: 488 LISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMV--- 544

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
                +P+   Y  +I G  K   +++       M  +G+ P+   Y S I   C     
Sbjct: 545 -ESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLC----- 598

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               G TS A ++  E    +        P++ +Y S+I+ LC++   + A+ L  D   
Sbjct: 599 --KNGRTSLAFKIFHEMKKRD------YFPNLCTYSSLIDGLCQEGQAEDAERLLDD--- 647

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            G  P+V  Y++L+ G C  GR  +A +L  S++ +G  P    Y  L+    K  +VE 
Sbjct: 648 -GCEPNVDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVES 706

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           AL ++  M++ G +P   C                   L+ +  L+  LCK+   + A  
Sbjct: 707 ALKIFDSMVTTGFQP---C-------------------LSDYKALICALCKANFRQKAQC 744

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           +F+ + +     + V +TV++ GL  EG  + + +LL  ME +
Sbjct: 745 MFQTMLKKHWNSDEVVWTVLLDGLLKEGETDLSLELLHVMESR 787



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 122/280 (43%), Gaps = 21/280 (7%)

Query: 66  VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
            +++DAL  F  M+     P   ++N ++   +             ++   GLLP+ ++ 
Sbjct: 531 AKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITY 590

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
              ++  CK    S AF     + ++ + P++ T   LI GLC +G+  +A  L      
Sbjct: 591 TSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDD--- 647

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
             C PNV      Y +++ GLC  G   +   L   MK +G+ P   +Y +L+   C  +
Sbjct: 648 -GCEPNVD----TYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNL 702

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
             E       +AL++ +  V    +      P +  Y ++I +LCK     KA+ +F  M
Sbjct: 703 EVE-------SALKIFDSMVTTGFQ------PCLSDYKALICALCKANFRQKAQCMFQTM 749

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
             +    D VV++ L+DG    G  D + +L   +ES  C
Sbjct: 750 LKKHWNSDEVVWTVLLDGLLKEGETDLSLELLHVMESRNC 789



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 129/302 (42%), Gaps = 68/302 (22%)

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
           VN  D   NT + L     F +         H D+  + S++N L +D L   A  + + 
Sbjct: 82  VNLLDTHNNTESVLR----FFHWVSRTHFFKH-DMSCFVSMLNRLVRDRLFVPADNVRIL 136

Query: 305 M----KSRGIIPDVVVYSSLID-----GYCL---------MGRIDD---ARKLFVSIESE 343
           M    ++ G +  V+   S I+     GY L         +G+ D     R +++ + + 
Sbjct: 137 MIKSCRNEGEVKRVIQVLSEINTTYDFGYTLYSFSTLLIQLGKFDMDGLGRDVYIEMLNS 196

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFE 403
           G  P+  ++N +I       KV+EA  + G +   G  PD                    
Sbjct: 197 GIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDT------------------- 237

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
                +  L+ G CK+  L  A+E+F ++ + G +PN VTY+ +I GLC EG +E+A D+
Sbjct: 238 ---FTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDM 294

Query: 464 LPDMEEK-------------------IRECLKAIELLHKMAKRYVKPDEITVSILEELLN 504
           L +M +K                    R C +A++LL KM KR   P+  T + L   L+
Sbjct: 295 LEEMIDKGIEPTVHAYTIPIVSLCDAGRSC-EAVKLLGKMKKRGCGPNVQTYTALISGLS 353

Query: 505 KD 506
           +D
Sbjct: 354 RD 355


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 112/423 (26%), Positives = 190/423 (44%), Gaps = 73/423 (17%)

Query: 117  GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
            G+LPD V    L++ FCK   +  A      +  +  +PDV+T   +I G C  G   EA
Sbjct: 789  GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEA 848

Query: 177  SGLFTKFVAFDCRPNVI-------------------------------PNVICYASIIDG 205
              LF +       P+ +                               PNV+ Y ++IDG
Sbjct: 849  GKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDG 908

Query: 206  LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
            LCK+G ++    L  +M   G+ P+ F YNS++   C         GN   A++L  EF 
Sbjct: 909  LCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLC-------KSGNIEEAVKLVGEFE 961

Query: 266  NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
                      + D ++Y +++++ CK   +DKA+E+  +M  +G+ P +V ++ L++G+C
Sbjct: 962  AAG------LNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFC 1015

Query: 326  LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
            L G ++D  KL   + ++G  P+ +++N+L+  Y     ++ A ++Y +M S GV PD  
Sbjct: 1016 LHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDG- 1074

Query: 386  CILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
                     +T  N            LV G CK+  ++ AW LF+++   G   +V TY+
Sbjct: 1075 ---------KTYEN------------LVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYS 1113

Query: 446  VMICGLCIEGGIEKAYDLLPDMEEKIRECLKA----IELLHKMAKRYVKPDEITVSILEE 501
            V+I G        +A ++   M    RE L A     +       +  +PD I   I E 
Sbjct: 1114 VLIKGFLKRKKFLEAREVFDQMR---REGLAADKEIFDFFSDTKYKGKRPDTIVDPIDEI 1170

Query: 502  LLN 504
            + N
Sbjct: 1171 IEN 1173



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 182/375 (48%), Gaps = 30/375 (8%)

Query: 109  LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
            L E +   GL P+      ++   C++  +++A  A   ++R+   PD V    LI G C
Sbjct: 746  LIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFC 805

Query: 169  MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
             +G    AS  F +  + D    + P+V+ Y +II G C+ G + +   LF +M  +G+ 
Sbjct: 806  KRGDIRAASKFFYEMHSRD----ITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLE 861

Query: 229  PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
            PD+  +  LI  YC A       G+   A  +H   +         C P+V++Y ++I+ 
Sbjct: 862  PDSVTFTELINGYCKA-------GHMKDAFRVHNHMIQAG------CSPNVVTYTTLIDG 908

Query: 289  LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
            LCK+  +D A EL  +M   G+ P++  Y+S+++G C  G I++A KL    E+ G   D
Sbjct: 909  LCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNAD 968

Query: 349  TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFR 395
            T +Y TL+++Y K  ++++A  +  EM+  G++P              +  + +  +L  
Sbjct: 969  TVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLN 1028

Query: 396  TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
             +       + T FN LV   C    L++A  ++K +   G  P+  TY  ++ G C   
Sbjct: 1029 WMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKAR 1088

Query: 456  GIEKAYDLLPDMEEK 470
             +++A+ L  +M+ K
Sbjct: 1089 NMKEAWFLFQEMKGK 1103



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 120/432 (27%), Positives = 197/432 (45%), Gaps = 48/432 (11%)

Query: 116  IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
            +G+  +  S NI+++  C++  + +A   L  +  K ++PDV++   ++ G C  G+  +
Sbjct: 683  VGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDK 742

Query: 176  ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
                  K +    R  + PN   Y SII  LC+   + +    F +M  +GI PD  VY 
Sbjct: 743  V----WKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYT 798

Query: 236  SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
            +LI  +C        +G+  AA +   E  + +        PDVL+Y +II+  C+   +
Sbjct: 799  TLIDGFC-------KRGDIRAASKFFYEMHSRD------ITPDVLTYTAIISGFCQIGDM 845

Query: 296  DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
             +A +LF +M  +G+ PD V ++ LI+GYC  G + DA ++   +   GC P+  +Y TL
Sbjct: 846  VEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTL 905

Query: 356  INSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKF 402
            I+   K   ++ A  L  EM  +G++P+             +  I EA +L         
Sbjct: 906  IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGL 965

Query: 403  ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
              D   +  L+D  CKS  +  A E+ K++   G +P +VT+ V++ G C+ G +E    
Sbjct: 966  NADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEK 1025

Query: 463  LLPDMEEK-----------------IRECLKAIELLHK-MAKRYVKPDEITVSILEELLN 504
            LL  M  K                 IR  LKA   ++K M  R V PD  T   L +   
Sbjct: 1026 LLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHC 1085

Query: 505  KDENCHECMNLL 516
            K  N  E   L 
Sbjct: 1086 KARNMKEAWFLF 1097



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 163/370 (44%), Gaps = 39/370 (10%)

Query: 67   ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            ++  A  FF  M     TP + ++ +++         V    L   +   GL PD V+  
Sbjct: 809  DIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFT 868

Query: 127  ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
             L+N +CK   + DAF     +++   SP+VVT   LI GLC +G    A+ L  +    
Sbjct: 869  ELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEM--- 925

Query: 187  DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
              +  + PN+  Y SI++GLCK G + +   L  + +  G+  D   Y +L+  YC    
Sbjct: 926  -WKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYC---- 980

Query: 247  WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                 G    A E+ +E       LG    P ++++  ++N  C   +++  ++L   M 
Sbjct: 981  ---KSGEMDKAQEILKEM------LGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWML 1031

Query: 307  SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            ++GI P+   ++SL+  YC+   +  A  ++  + S G  PD  +Y  L+  + K   ++
Sbjct: 1032 AKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMK 1091

Query: 367  EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
            EA  L+ EM   G                      F + ++ ++ L+ G  K  +   A 
Sbjct: 1092 EAWFLFQEMKGKG----------------------FSVSVSTYSVLIKGFLKRKKFLEAR 1129

Query: 427  ELFKKLPRYG 436
            E+F ++ R G
Sbjct: 1130 EVFDQMRREG 1139



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 138/315 (43%), Gaps = 71/315 (22%)

Query: 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
            T+ A+ +  EF     E+GV    +V SY  +I+ +C+   + +A  L L M+ +G  P
Sbjct: 669 KTATAIIVFREF----PEVGVCW--NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTP 722

Query: 313 DVVVYSSLIDGYCLMGRIDDARKL-----------------------------------F 337
           DV+ YS++++GYC  G +D   KL                                   F
Sbjct: 723 DVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAF 782

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---------NSC-- 386
             +  +G +PDT  Y TLI+ + K   +  A   + EM S  + PD           C  
Sbjct: 783 SEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQI 842

Query: 387 --ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
             ++EA +LF  +     E D   F  L++G CK+  ++ A+ +   + + G  PNVVTY
Sbjct: 843 GDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTY 902

Query: 445 TVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLN 504
           T +I GLC EG ++ A                  ELLH+M K  ++P+  T + +   L 
Sbjct: 903 TTLIDGLCKEGDLDSAN-----------------ELLHEMWKIGLQPNIFTYNSIVNGLC 945

Query: 505 KDENCHECMNLLPSF 519
           K  N  E + L+  F
Sbjct: 946 KSGNIEEAVKLVGEF 960



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 120/315 (38%), Gaps = 54/315 (17%)

Query: 62   KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
            K G+++  + L    + I +QP  F  ++NS++  L         + L       GL  D
Sbjct: 911  KEGDLDSANELLHEMWKIGLQPNIF--TYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNAD 968

Query: 122  FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             V+   LM+ +CK   +  A   L  +L K   P +VT   L+ G C+ G   +   L  
Sbjct: 969  TVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLN 1028

Query: 182  KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
              +A      + PN   + S++   C    +     ++ DM  RG+ PD   Y +L++ +
Sbjct: 1029 WMLA----KGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGH 1084

Query: 242  CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
            C A N                                                + +A  L
Sbjct: 1085 CKARN------------------------------------------------MKEAWFL 1096

Query: 302  FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
            F +MK +G    V  YS LI G+    +  +AR++F  +  EG   D   ++   ++  K
Sbjct: 1097 FQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYK 1156

Query: 362  IEKVEEALSLYGEMI 376
             ++ +  +    E+I
Sbjct: 1157 GKRPDTIVDPIDEII 1171


>gi|218191264|gb|EEC73691.1| hypothetical protein OsI_08267 [Oryza sativa Indica Group]
          Length = 751

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 115/383 (30%), Positives = 187/383 (48%), Gaps = 42/383 (10%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V+ NIL + FCK   V + F  L R+  +   P+ +T G  I G C  G  +EA  L
Sbjct: 398 PDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRGGNLSEAEVL 457

Query: 180 FTKFVAFDCRPNVIPNV-ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           F            I ++ + Y+S++ G    G+ +   +LF+ +  +G   D F  + LI
Sbjct: 458 FNVV-----EEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLI 512

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
              C   N + A       LE +           V+  PDV+SY  +I+  C++  +DKA
Sbjct: 513 NDLCRVGNVQGASNVCKIMLEHN-----------VV--PDVISYSKLISIYCQNGDMDKA 559

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
              F DM  RG+  DV+VY+ L++GYC  GR+ +A +LFV + + G  PD  +Y  L++ 
Sbjct: 560 HLWFHDMVQRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDG 619

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
           + K    +    +  E  S  +R +++      +L  ++ + + E D+  +  L+DG CK
Sbjct: 620 HLKETLQQGWEGIAKERRSFLLRANHN------KLLSSMKDMQIEPDVPCYTVLIDGKCK 673

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAI 478
           +  L  A ELF ++ + G  P+   YT +I G C +G I KA DLL +M +K        
Sbjct: 674 AEYLVEARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDK-------- 725

Query: 479 ELLHKMAKRYVKPDEITVSILEE 501
                     ++PDE+T S+L +
Sbjct: 726 ---------GIEPDELTFSVLNQ 739



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 156/351 (44%), Gaps = 21/351 (5%)

Query: 124 SLNILMNCFCKM----IGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           SL+ +++C  K       V         I R    P V T   L++ +   G++      
Sbjct: 131 SLSFMVDCLIKACITCYDVQATICLFSGICRLGVVPSVWTWNLLLKFIAETGEYEMVLAA 190

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           + +   F     + P+V  +A +   L +   V++   ++ +M   G+ PDA  Y+S + 
Sbjct: 191 YNEMKCF----QLTPDVYTFAIVTRSLFQAKKVDEALQVWAEMTEMGVKPDARGYSSFLI 246

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C      D +    A + L E     N E   +   + ++Y  +++ LCK++ +D+A+
Sbjct: 247 GLC------DCRKYDLAYVILQEI----NREKVPV---EAMAYNMVMDGLCKEMRLDEAE 293

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           +L  +   +G  PDV  YS LI  YC MG +  A   + ++ S G   +    + L+  +
Sbjct: 294 KLLENKARQGSNPDVYGYSYLIQSYCKMGNLIKAVDHYEAMVSHGIETNCHIVSYLLQCF 353

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            K+    E ++ + +    G+  D   +  A ++F  +     E D+  +N L  G CKS
Sbjct: 354 RKLGMTSEVIAYFLKFKDSGLHLDKGEMQNAQQVFEEMLKANIEPDIVTYNILASGFCKS 413

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
             +   ++L  ++   G EPN +TY + I G C  G + +A  L   +EEK
Sbjct: 414 GLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEK 464



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 120/260 (46%), Gaps = 11/260 (4%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           R+   G L D  S + L+N  C++  V  A      +L     PDV++   LI   C  G
Sbjct: 495 RVARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHNVVPDVISYSKLISIYCQNG 554

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
              +A   F   V    +  +  +VI Y  +++G CK G + +   LF+ M   GI PD 
Sbjct: 555 DMDKAHLWFHDMV----QRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDV 610

Query: 232 FVYNSLIRVY---CCAVNWED-AKGNTSAALEL-HEEFVNGNGELGVICHPDVLSYCSII 286
             Y  L+  +        WE  AK   S  L   H + ++   ++ +   PDV  Y  +I
Sbjct: 611 IAYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQI--EPDVPCYTVLI 668

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           +  CK   + +A+ELF +M  +G+ PD   Y++LI+GYC  G I  A  L   +  +G  
Sbjct: 669 DGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIE 728

Query: 347 PDTSSYNTLINSYSKIEKVE 366
           PD  +++ L  S  +  K++
Sbjct: 729 PDELTFSVLNQSSLRSRKIQ 748



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 103/486 (21%), Positives = 198/486 (40%), Gaps = 70/486 (14%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++   +C F+ +  +   P + ++N LL  +A    Y   +     +    L PD  +  
Sbjct: 148 DVQATICLFSGICRLGVVPSVWTWNLLLKFIAETGEYEMVLAAYNEMKCFQLTPDVYTFA 207

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           I+     +   V +A      +      PD       + GLC   K+  A  +  +    
Sbjct: 208 IVTRSLFQAKKVDEALQVWAEMTEMGVKPDARGYSSFLIGLCDCRKYDLAYVILQEIN-- 265

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             R  V    + Y  ++DGLCK+  +++   L  +   +G  PD + Y+ LI+ YC    
Sbjct: 266 --REKVPVEAMAYNMVMDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIQSYC---- 319

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY---CSIINSLCKDVL--------- 294
                GN   A++ +E  V+   E    CH  ++SY   C     +  +V+         
Sbjct: 320 ---KMGNLIKAVDHYEAMVSHGIETN--CH--IVSYLLQCFRKLGMTSEVIAYFLKFKDS 372

Query: 295 ---VDK-----AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
              +DK     A+++F +M    I PD+V Y+ L  G+C  G + +   L   +  +G  
Sbjct: 373 GLHLDKGEMQNAQQVFEEMLKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLE 432

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAA----ELFRTLHNTKF 402
           P++ +Y   I  + +   + EA  L+  +   G+  D+  ++ ++     L     +  +
Sbjct: 433 PNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEKGI--DHIEVMYSSMVCGYLLSGWTDHAY 490

Query: 403 ELDLTV---------FNC--LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
            L + V         F+C  L++ LC+   ++ A  + K +  +   P+V++Y+ +I   
Sbjct: 491 MLFVRVARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHNVVPDVISYSKLISIY 550

Query: 452 CIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDE 493
           C  G ++KA+    DM +                  K     +A +L  +M    +KPD 
Sbjct: 551 CQNGDMDKAHLWFHDMVQRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDV 610

Query: 494 ITVSIL 499
           I  ++L
Sbjct: 611 IAYTVL 616



 Score = 38.5 bits (88), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 24/205 (11%)

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
           +SR +  D VV +     +CL  R   A   F   +S G   D S+Y+ +I   S   + 
Sbjct: 39  RSRTLCSDSVVQTL----HCLKRRPAIAFAYFKDTQSIGFNHDFSTYSEMIQILSHSRQG 94

Query: 366 EEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
           +  +SL+ E++S         IL   +  R    T   L   V +CL+      + +++ 
Sbjct: 95  KMLVSLFSELVS-SSNASGPEILPLVDHHRRTCATPCSLSFMV-DCLIKACITCYDVQAT 152

Query: 426 WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE---------KAYDLLPDMEE------- 469
             LF  + R G  P+V T+ +++  +   G  E         K + L PD+         
Sbjct: 153 ICLFSGICRLGVVPSVWTWNLLLKFIAETGEYEMVLAAYNEMKCFQLTPDVYTFAIVTRS 212

Query: 470 --KIRECLKAIELLHKMAKRYVKPD 492
             + ++  +A+++  +M +  VKPD
Sbjct: 213 LFQAKKVDEALQVWAEMTEMGVKPD 237


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 109/388 (28%), Positives = 191/388 (49%), Gaps = 51/388 (13%)

Query: 148 ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207
           ++R+  SP+++T   +I GLC  GK  +A  +      +       PNV+ Y ++IDG C
Sbjct: 221 MIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVW----GFWPNVVTYNTLIDGYC 276

Query: 208 KDGFVNKVR---VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           K G V K+     +  +M    + P++  +N LI  +C          N SAAL++ EE 
Sbjct: 277 KMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFC-------KDENLSAALKVFEEM 329

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
            +          P V++Y S++N LC +  +++AK L  +M S  + P+V+ Y++LI+GY
Sbjct: 330 QSQG------LKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGY 383

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           C    +++AR+LF +I  +G  P+  ++NTL++ Y K  K+EEA  L   M+  G  P+ 
Sbjct: 384 CKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNA 443

Query: 385 S---CIL----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
           S   C++          E   L   +     + D   +N L+   C+    + A  L  +
Sbjct: 444 STYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDE 503

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE-------------CLK-- 476
           +   G +P+ +TY +++ G C+EG +  A +L   ME++ R              C K  
Sbjct: 504 MLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGK 563

Query: 477 ---AIELLHKMAKRYVKPDEITVSILEE 501
              A  LL++M ++ + P+  T  I++E
Sbjct: 564 LEDANGLLNEMLEKGLIPNRTTYEIIKE 591



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 114/427 (26%), Positives = 192/427 (44%), Gaps = 70/427 (16%)

Query: 122 FVSLNILMNCFCKMIGVSDAFV--------------ALGRILRKVFSPDVVTLGCLIRGL 167
           F SL++    FC    ++D  V              A  R     +   V++   L+  L
Sbjct: 146 FHSLSVCSGQFCANSIIADMLVLAYVENSKTVLGLEAFKRAGDYRYKLSVLSCNPLLSAL 205

Query: 168 CMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI 227
             + +F     ++ + +    R  + PN+I + ++I+GLCK G +NK   +  DMK  G 
Sbjct: 206 VKENEFGGVEFVYKEMI----RRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGF 261

Query: 228 YPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIIN 287
           +P+   YN+LI  YC         G    A  + +E V           P+ +++  +I+
Sbjct: 262 WPNVVTYNTLIDGYCKM----GRVGKMYKADAILKEMVENK------VSPNSVTFNVLID 311

Query: 288 SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
             CKD  +  A ++F +M+S+G+ P VV Y+SL++G C  G++++A+ L   + S    P
Sbjct: 312 GFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKP 371

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLT 407
           +  +YN LIN Y K + +EEA  L+  +   G+ P+                      + 
Sbjct: 372 NVITYNALINGYCKKKLLEEARELFDNIGKQGLTPN----------------------VI 409

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            FN L+ G CK  ++  A+ L K +   G  PN  TY  +I G C EG +E+  +LL +M
Sbjct: 410 TFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEM 469

Query: 468 E-------------------EKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDEN 508
           +                   EK +E  KA  L+ +M  + +KP  +T +IL      + N
Sbjct: 470 QCRGVKADTVTYNILISAWCEK-KEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGN 528

Query: 509 CHECMNL 515
               +NL
Sbjct: 529 LRAALNL 535



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 173/389 (44%), Gaps = 53/389 (13%)

Query: 85  PFMPSFNSLLGAL-----AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVS 139
           P + ++N+L+         GK Y  + I      N +   P+ V+ N+L++ FCK   +S
Sbjct: 263 PNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVS--PNSVTFNVLIDGFCKDENLS 320

Query: 140 DAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICY 199
            A      +  +   P VVT   L+ GLC +GK  EA  L  + ++     N+ PNVI Y
Sbjct: 321 AALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLS----SNLKPNVITY 376

Query: 200 ASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE 259
            ++I+G CK   + + R LF ++  +G+ P+   +N+L+  YC         G    A  
Sbjct: 377 NALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYC-------KFGKMEEAFL 429

Query: 260 LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSS 319
           L +  +    E G +  P+  +Y  +I   C++  +++ K L  +M+ RG+  D V Y+ 
Sbjct: 430 LQKVML----EKGFL--PNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNI 483

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           LI  +C       A +L   +  +G  P   +YN L+N Y     +  AL+L  +M   G
Sbjct: 484 LISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEG 543

Query: 380 VRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
                                    ++  +N L+ G C+  +L  A  L  ++   G  P
Sbjct: 544 RWA----------------------NVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIP 581

Query: 440 NVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           N  TY ++      E  +EK +  LPD+E
Sbjct: 582 NRTTYEII-----KEEMMEKGF--LPDIE 603



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 144/308 (46%), Gaps = 17/308 (5%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           M+  + +P   +FN L+      +     + + E + + GL P  V+ N L+N  C    
Sbjct: 294 MVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGK 353

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           +++A V L  +L     P+V+T   LI G C +    EA  LF        +  + PNVI
Sbjct: 354 LNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNI----GKQGLTPNVI 409

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            + +++ G CK G + +  +L   M  +G  P+A  YN LI  +C     E+ K      
Sbjct: 410 TFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKN----- 464

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
             L+E    G          D ++Y  +I++ C+     KA  L  +M  +G+ P  + Y
Sbjct: 465 -LLNEMQCRG-------VKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTY 516

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           + L++GYC+ G +  A  L   +E EG   +  +YN LI  Y +  K+E+A  L  EM+ 
Sbjct: 517 NILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLE 576

Query: 378 MGVRPDNS 385
            G+ P+ +
Sbjct: 577 KGLIPNRT 584



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 132/285 (46%), Gaps = 17/285 (5%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+ AL  F  M      P + ++NSL+  L  +        L + + +  L P+ ++ N 
Sbjct: 319 LSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNA 378

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N +CK   + +A      I ++  +P+V+T   L+ G C  GK  EA  L  K +   
Sbjct: 379 LINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAF-LLQKVM--- 434

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
                +PN   Y  +I G C++G + +V+ L  +M+ RG+  D   YN LI  +C     
Sbjct: 435 LEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWC----- 489

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
            + K    AA  + E    G         P  L+Y  ++N  C +  +  A  L   M+ 
Sbjct: 490 -EKKEPKKAARLIDEMLDKG-------LKPSHLTYNILLNGYCMEGNLRAALNLRKQMEK 541

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
            G   +VV Y+ LI GYC  G+++DA  L   +  +G IP+ ++Y
Sbjct: 542 EGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTY 586



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 116/258 (44%), Gaps = 17/258 (6%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N    E +LN+A    + M+     P + ++N+L+     KK       L + +   GL 
Sbjct: 346 NGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLT 405

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ ++ N L++ +CK   + +AF+    +L K F P+  T  CLI G C +GK  E   L
Sbjct: 406 PNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNL 465

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             +     CR  V  + + Y  +I   C+     K   L  +M  +G+ P    YN L+ 
Sbjct: 466 LNE---MQCR-GVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLN 521

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            YC        +GN  AAL L ++ +   G        +V++Y  +I   C+   ++ A 
Sbjct: 522 GYC-------MEGNLRAALNLRKQ-MEKEGRWA-----NVVTYNVLIQGYCRKGKLEDAN 568

Query: 300 ELFLDMKSRGIIPDVVVY 317
            L  +M  +G+IP+   Y
Sbjct: 569 GLLNEMLEKGLIPNRTTY 586



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 83/184 (45%), Gaps = 22/184 (11%)

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           A S+  +M+ +    ++  +L   E F+   + +++L +   N L+  L K         
Sbjct: 158 ANSIIADMLVLAYVENSKTVL-GLEAFKRAGDYRYKLSVLSCNPLLSALVKENEFGGVEF 216

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME------------------- 468
           ++K++ R    PN++T+  +I GLC  G + KA D++ DM+                   
Sbjct: 217 VYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYC 276

Query: 469 --EKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEE 526
              ++ +  KA  +L +M +  V P+ +T ++L +   KDEN    + +     S+  + 
Sbjct: 277 KMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKP 336

Query: 527 SKLT 530
           + +T
Sbjct: 337 TVVT 340


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 122/445 (27%), Positives = 199/445 (44%), Gaps = 61/445 (13%)

Query: 78  MIH-MQPTPFMP---SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
           +IH M    F+P   +++ ++G L       N   L + +   G++PD  +  IL++CF 
Sbjct: 476 VIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFS 535

Query: 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
           K   +  A   L  ++R    P VVT   LI       K + A+ LF   +A  C     
Sbjct: 536 KAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGC----F 591

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD----------------AFVYNSL 237
           PNVI Y ++IDG CK G + K   ++  M+G    PD                   Y +L
Sbjct: 592 PNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGAL 651

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           +   C A   +DA+        L   FV+G       C P+ + Y ++I+  CK   +D+
Sbjct: 652 VDGLCKAHKVKDARD------LLETMFVDG-------CEPNTIVYDALIDGFCKAAKLDE 698

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A+E+F  M   G  P+V  YSSLID      R+D   K+   +    C P+   Y  +I+
Sbjct: 699 AQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMID 758

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
             SK+ K +EA  L   M   G +P                      ++  +  ++DG  
Sbjct: 759 GLSKVAKTDEAYKLMLMMEEKGCKP----------------------NVVTYTAMIDGFG 796

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKA 477
           K+ ++    ELF+++   G  PN VTYTV+I   C  G +++AY LL +M++      K 
Sbjct: 797 KAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWP--KH 854

Query: 478 IELLHKMAKRYVKPDEITVSILEEL 502
           +    K+ + Y +   +++ +LEE+
Sbjct: 855 VSSYCKVIEGYKREFILSLGLLEEV 879



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 120/473 (25%), Positives = 206/473 (43%), Gaps = 67/473 (14%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC---KMIG---- 137
           P    FNSL+ A      +     L +++      P +V  NIL+   C   ++ G    
Sbjct: 376 PSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTF 435

Query: 138 -----VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNV 192
                  +  ++ G +L KV   +VV+     R LC  GKF +A  +  + +        
Sbjct: 436 ELAEKAYNEMLSAGTVLNKV---NVVSFA---RCLCGFGKFEKAYKVIHEMMG----NGF 485

Query: 193 IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252
           +P+   Y+ +I  LC    V     LF +MKG G+ PD + Y  LI  +  A       G
Sbjct: 486 VPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKA-------G 538

Query: 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
               A    +E V         C P V++Y ++I++  K   V  A ELF  M ++G  P
Sbjct: 539 IIKQAHNWLDEMVRDG------CEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFP 592

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
           +V+ Y++LIDGYC  G I+ A +++  +  +  IPD   Y  + N+ ++   V       
Sbjct: 593 NVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNV------- 645

Query: 373 GEMISMGVRPDNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
              ++ G   D  C    + +A +L  T+     E +  V++ L+DG CK+ +L  A E+
Sbjct: 646 ---VTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEV 702

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------K 470
           F K+  +G  PNV TY+ +I  L  +  ++    +L  M E                  K
Sbjct: 703 FHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSK 762

Query: 471 IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
           + +  +A +L+  M ++  KP+ +T + + +   K     +C+ L     S+ 
Sbjct: 763 VAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKG 815



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 125/513 (24%), Positives = 195/513 (38%), Gaps = 124/513 (24%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           +   ++ +GL  D  +L       CK   V     AL  I ++ F P+ +    +I GLC
Sbjct: 263 VHREMSELGLSMDEFTLGFFAQALCK---VGKWREALSLIEKEDFVPNTILYNKMISGLC 319

Query: 169 MQGKFTEASGLFTKFVAFDCRPNV-------------------------------IPNVI 197
               F EA     +  +  C PNV                                P+  
Sbjct: 320 EASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYT 379

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA------VNWEDAK 251
            + S++   CK    +    L   M+     P   VYN LI   C        V +E A+
Sbjct: 380 IFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAE 439

Query: 252 ----------------------------GNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
                                       G    A ++  E + GNG +     PD  +Y 
Sbjct: 440 KAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMM-GNGFV-----PDTSTYS 493

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
            +I  LC    V+ A  LF +MK  G++PDV  Y+ LID +   G I  A      +  +
Sbjct: 494 EVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRD 553

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC----ILEA 390
           GC P   +Y TLI++Y K +KV  A  L+  MI+ G  P         D  C    I +A
Sbjct: 554 GCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKA 613

Query: 391 AEL----------------FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
            ++                F+  +N   + ++  +  LVDGLCK+ +++ A +L + +  
Sbjct: 614 CQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFV 673

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEI 494
            G EPN + Y  +I G C    +++A                  E+ HKM +    P+  
Sbjct: 674 DGCEPNTIVYDALIDGFCKAAKLDEAQ-----------------EVFHKMVEHGYNPNVY 716

Query: 495 TVSILEELLNKDENCHECMNLLPSFLSRNQEES 527
           T S L + L KD+     ++L+   LS+  E S
Sbjct: 717 TYSSLIDRLFKDKR----LDLVLKVLSKMLENS 745



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 146/353 (41%), Gaps = 48/353 (13%)

Query: 64  GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV 123
           G+ ++ D   +F    ++   P + ++ +L+  L       +   L E +   G  P+ +
Sbjct: 622 GDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTI 681

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
             + L++ FCK   + +A     +++   ++P+V T   LI  L    +      + +K 
Sbjct: 682 VYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKM 741

Query: 184 VAFDCRPNVI-------------------------------PNVICYASIIDGLCKDGFV 212
           +   C PN++                               PNV+ Y ++IDG  K G V
Sbjct: 742 LENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKV 801

Query: 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
           +K   LF +M  +G  P+   Y  LI  +CCA       G+   A  L EE         
Sbjct: 802 DKCLELFREMGSKGCAPNFVTYTVLIN-HCCAT------GHLDEAYALLEEMKQ------ 848

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
                 V SYC +I    ++ ++     L  +++  G  P +++Y  LID +   GR++ 
Sbjct: 849 TYWPKHVSSYCKVIEGYKREFILSLG--LLEEVEKNGSAPIILLYKVLIDNFVKAGRLEV 906

Query: 333 ARKLFVSI--ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           A +L   +   S       + Y +LI S+S   K+  A  L+ +MI  GV PD
Sbjct: 907 ALELHKEVISASMSMAAKKNLYTSLIYSFSYASKIGHAFELFYDMIRDGVIPD 959



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 125/320 (39%), Gaps = 62/320 (19%)

Query: 202 IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261
           +I   C++G  N        +K  G  P    YN+L++V+  A   + A+        +H
Sbjct: 212 LIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQ-------LVH 264

Query: 262 EEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
            E      ELG+      L +     +LCK   V K +E    ++    +P+ ++Y+ +I
Sbjct: 265 REM----SELGLSMDEFTLGF--FAQALCK---VGKWREALSLIEKEDFVPNTILYNKMI 315

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
            G C     ++A      + S  CIP+  +Y  L+      +++     +   MI+ G  
Sbjct: 316 SGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCY 375

Query: 382 PDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
           P                        T+FN LV   CKS     A++L KK+ +   +P  
Sbjct: 376 P----------------------SYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGY 413

Query: 442 VTYTVMICGLCIEGGI---------EKAYDLLPDMEEKIRE--------CL-------KA 477
           V Y ++I  +C  G +         EKAY+ +      + +        CL       KA
Sbjct: 414 VVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKA 473

Query: 478 IELLHKMAKRYVKPDEITVS 497
            +++H+M      PD  T S
Sbjct: 474 YKVIHEMMGNGFVPDTSTYS 493


>gi|242078465|ref|XP_002444001.1| hypothetical protein SORBIDRAFT_07g005650 [Sorghum bicolor]
 gi|241940351|gb|EES13496.1| hypothetical protein SORBIDRAFT_07g005650 [Sorghum bicolor]
          Length = 824

 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 126/452 (27%), Positives = 201/452 (44%), Gaps = 75/452 (16%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           ++   +GL  D V  NI M+ +CK+  +++A   L  ++     PD +   CLI G C++
Sbjct: 393 QKFRDLGLHLDGVLYNITMDAYCKLGNMNEAVKLLNEMMAGGLVPDKIHYTCLINGYCLK 452

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G+   A  +F + +    + N+ P+V+ Y  +  G  ++G V KV  L   M  +G+ P+
Sbjct: 453 GETENAWQVFEQML----KANIKPDVVTYNILASGYSRNGAVIKVYDLLEHMVDQGLEPN 508

Query: 231 AFVYNSLIRVYCCAVNWEDA---------KGNTSAALELHEEFVNGNGELGVICHP---- 277
           +  Y   I  +C   N  +A         KG  +  + L+   V G    G   H     
Sbjct: 509 SLTYGVAIACFCREGNLSEAEVLFNILEEKGIDNIEV-LYSSMVCGYLYSGWTDHAYTLF 567

Query: 278 ----------DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
                     D LS   +INSLC D  V++A  +   M  +  +PDV+ YS LI  YC  
Sbjct: 568 LRVAKQGNMVDNLSCSKLINSLCIDKKVEEASTVCSMMLEKNAVPDVISYSKLISAYCQK 627

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---- 383
             + +A   F+ +   G + D   Y  L+N Y K+ +++EA  L+ +MI++G++PD    
Sbjct: 628 RDMHNAHLWFLDMVDRG-LSDVIVYTVLMNGYCKVGRLQEACDLFVQMINLGIKPDVVAY 686

Query: 384 ----NSCILEAAEL-------------FRTLHNT--------KFELDLTVFNCLVDGLCK 418
               +  I EA                 RT H T        + E D+T +  L+DG CK
Sbjct: 687 TVLLDGHIKEALHQGWQGIAKEWRSFRLRTKHKTLLSSMKDMEIEPDVTCYTVLIDGHCK 746

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAI 478
           +  L  A  LF ++   G  P+V  YT +I G C +G I KA DLL +M +         
Sbjct: 747 TEYLDEARGLFDEMLAKGLTPDVYAYTALINGYCSQGEIAKAEDLLQEMTDN-------- 798

Query: 479 ELLHKMAKRYVKPDEITVSILEELLNKDENCH 510
                     +KPD +T S+L +   +    H
Sbjct: 799 ---------GMKPDVLTFSVLHQRTLRHRKAH 821



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 114/455 (25%), Positives = 200/455 (43%), Gaps = 49/455 (10%)

Query: 56  YLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGA--LAGKKYYVNFICLSERL 113
           Y + +     VE+   LC   ++  +    F+  F S  G   +  + Y        +R+
Sbjct: 163 YTTSHDAQETVEMFCHLCRLGFVPTLWACNFLLKFVSQSGDSDMVVRAY--------DRM 214

Query: 114 NTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF 173
               L  D  SLNI+   F +     +AF    R++     PDV      I GLC  GK+
Sbjct: 215 KCFQLTLDTQSLNIVTRSFFEANKADEAFQVWVRMIEMGVKPDVHGYSSFIIGLCECGKY 274

Query: 174 TEASGLFTKFVAFD--CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR-GIYPD 230
             A  + +++       +  V    I Y  +IDGLCK+  + +   + L++K R G  PD
Sbjct: 275 DLAYNMVSRYAVLHEIIQERVAVESIAYNMVIDGLCKEMKLEEAEKV-LEIKTRHGSTPD 333

Query: 231 AFVYNSLIRVYCCAVN----WEDAKGNTSAALELHEEFV----NGNGELGVIC------- 275
            + Y+ LIR YC   N    W   +   S  +E++   V        +LG++        
Sbjct: 334 LYGYSYLIRTYCKTGNLGKAWHHIEAMVSHGIEINCYIVGYLLQCLKKLGMVSEVIVYFQ 393

Query: 276 -------HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                  H D + Y   +++ CK   +++A +L  +M + G++PD + Y+ LI+GYCL G
Sbjct: 394 KFRDLGLHLDGVLYNITMDAYCKLGNMNEAVKLLNEMMAGGLVPDKIHYTCLINGYCLKG 453

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---- 384
             ++A ++F  +      PD  +YN L + YS+   V +   L   M+  G+ P++    
Sbjct: 454 ETENAWQVFEQMLKANIKPDVVTYNILASGYSRNGAVIKVYDLLEHMVDQGLEPNSLTYG 513

Query: 385 ---SC------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
              +C      + EA  LF  L     +    +++ +V G   S     A+ LF ++ + 
Sbjct: 514 VAIACFCREGNLSEAEVLFNILEEKGIDNIEVLYSSMVCGYLYSGWTDHAYTLFLRVAKQ 573

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           G   + ++ + +I  LCI+  +E+A  +   M EK
Sbjct: 574 GNMVDNLSCSKLINSLCIDKKVEEASTVCSMMLEK 608



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 112/448 (25%), Positives = 189/448 (42%), Gaps = 53/448 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  PD    + L+  +CK   +  A+  +  ++      +   +G L++ L   G  +E 
Sbjct: 329 GSTPDLYGYSYLIRTYCKTGNLGKAWHHIEAMVSHGIEINCYIVGYLLQCLKKLGMVSEV 388

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
              F KF        +  + + Y   +D  CK G +N+   L  +M   G+ PD   Y  
Sbjct: 389 IVYFQKFRDL----GLHLDGVLYNITMDAYCKLGNMNEAVKLLNEMMAGGLVPDKIHYTC 444

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH-------------------- 276
           LI  YC        KG T  A ++ E+ +  N +  V+ +                    
Sbjct: 445 LINGYC-------LKGETENAWQVFEQMLKANIKPDVVTYNILASGYSRNGAVIKVYDLL 497

Query: 277 ---------PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
                    P+ L+Y   I   C++  + +A+ LF  ++ +GI    V+YSS++ GY   
Sbjct: 498 EHMVDQGLEPNSLTYGVAIACFCREGNLSEAEVLFNILEEKGIDNIEVLYSSMVCGYLYS 557

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---N 384
           G  D A  LF+ +  +G + D  S + LINS    +KVEEA ++   M+     PD    
Sbjct: 558 GWTDHAYTLFLRVAKQGNMVDNLSCSKLINSLCIDKKVEEASTVCSMMLEKNAVPDVISY 617

Query: 385 SCILEAAELFRTLHNTKFEL---------DLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
           S ++ A    R +HN              D+ V+  L++G CK  RL+ A +LF ++   
Sbjct: 618 SKLISAYCQKRDMHNAHLWFLDMVDRGLSDVIVYTVLMNGYCKVGRLQEACDLFVQMINL 677

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEIT 495
           G +P+VV YTV++ G  I+  + + +  +       R   K   LL  M    ++PD   
Sbjct: 678 GIKPDVVAYTVLLDGH-IKEALHQGWQGIAKEWRSFRLRTKHKTLLSSMKDMEIEPDVTC 736

Query: 496 VSILEELLNKDENCHECMNLLPSFLSRN 523
            ++L +   K E   E   L    L++ 
Sbjct: 737 YTVLIDGHCKTEYLDEARGLFDEMLAKG 764


>gi|242081015|ref|XP_002445276.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
 gi|241941626|gb|EES14771.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
          Length = 768

 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 122/461 (26%), Positives = 197/461 (42%), Gaps = 66/461 (14%)

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           F +MI     P   ++  L+        +   + + + ++T GL PD V   +L++  CK
Sbjct: 225 FQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQPDCVIYAVLLDYLCK 284

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN--- 191
               ++A      ++RK   P V   G L+ G   +G  +E        V     P+   
Sbjct: 285 NGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMHSFLDLMVRNGVSPDHHI 344

Query: 192 ----------------------------VIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
                                       + P V+ Y ++ID LCK G V+   + F  M 
Sbjct: 345 FNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVDDAVLKFNQMI 404

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKG----NTSAALELHEEFVN-------GNGE-- 270
             G+ PD FV++SL+   C    WE A+          + L+  F N         G   
Sbjct: 405 NEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNILMCNLCREGRVM 464

Query: 271 ---------LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
                    L V   PDV+SY ++++  C    +D+A +L   M S G+ PD   Y++L+
Sbjct: 465 EAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLL 524

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
            GYC   RIDDA  LF  +  +G  P   +YNT+++   +I +  EA  LY  MI+   +
Sbjct: 525 HGYCKARRIDDAYSLFREMLMKGLTPGVVTYNTILHGLFQIGRFCEAKELYLNMINNRRK 584

Query: 382 PD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
            D             N+ + EA ++F++L +   +LD+   N ++  L K  R   A +L
Sbjct: 585 CDIYTYTIILNGLCRNNFVDEAFKMFQSLCSKDLQLDIFTINIMIGALLKGGRKEDAMDL 644

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           F  +  YG  P+V TY ++   L  EG +E+  +L   MEE
Sbjct: 645 FATISAYGLVPDVETYRLIAENLIKEGSLEELDELFSAMEE 685



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 176/394 (44%), Gaps = 47/394 (11%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ V+   +++  CK   V  A      ++ K   P+  T  CLI G    GK+ E   +
Sbjct: 200 PNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQM 259

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             +      +P+ +     YA ++D LCK+G   + R +F  +  +GI P   +Y  L+ 
Sbjct: 260 LQEMSTHGLQPDCV----IYAVLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLH 315

Query: 240 VYCCAVNWEDAKGNTSAALEL---------HEEF---VNGNGELGVI------------- 274
            Y      E A     + L+L         H  F    N   +  +I             
Sbjct: 316 GYAT----EGALSEMHSFLDLMVRNGVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQ 371

Query: 275 -CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
              P V++Y ++I++LCK   VD A   F  M + G+ PD+ V+SSL+ G C + + + A
Sbjct: 372 WLSPGVVNYGALIDALCKLGRVDDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKA 431

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---------- 383
            KLF  +  +G   + + +N L+ +  +  +V EA  L   M+ + VRPD          
Sbjct: 432 EKLFFEVLDQGIRLNAAFFNILMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDG 491

Query: 384 ---NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
                 I EAA+L   + +   + D   +N L+ G CK+ R+  A+ LF+++   G  P 
Sbjct: 492 HCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPG 551

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC 474
           VVTY  ++ GL   G   +A +L  +M    R+C
Sbjct: 552 VVTYNTILHGLFQIGRFCEAKELYLNMINNRRKC 585



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 123/523 (23%), Positives = 211/523 (40%), Gaps = 125/523 (23%)

Query: 52  KLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALA------GKKYYVN 105
           +L + ++  ++SG + L+DAL  F+ M+       + +FN LL  ++        +  V+
Sbjct: 16  ELERVIAGRARSGSLGLDDALKLFDEMLTYARPASVRTFNRLLTVVSRARCSSASELVVS 75

Query: 106 FICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFS-PDVVTLGCLI 164
                 R  ++ + P   +  IL+ CFC+M  +   F A G IL+  +S  + V  G L+
Sbjct: 76  LFNRMIRECSVKVAPSSCTYTILIGCFCRMGRLKHGFAAFGLILKTGWSLNNTVIFGQLL 135

Query: 165 RGLCMQGKFTEASG-LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
           +GLC   +  EA+  L  +   F C      NVI Y  ++ GLC +              
Sbjct: 136 KGLCDAKRVDEATDILLRRMPEFGC----TLNVISYNILLKGLCNEK------------- 178

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL-HEEFVNGNGELGVICHPDVLSY 282
                                            ALEL H    +G+G       P+V++Y
Sbjct: 179 -----------------------------RAEEALELMHMMADDGDGS----HTPNVVTY 205

Query: 283 CSIINSLCKDVLVDKAKELF-----------------------------------LDMKS 307
            ++I+ LCK  +VD+AK +F                                    +M +
Sbjct: 206 TTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMST 265

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            G+ PD V+Y+ L+D  C  GR  +AR +F S+  +G  P  + Y  L++ Y+    + E
Sbjct: 266 HGLQPDCVIYAVLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSE 325

Query: 368 ALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFELDLTVFNCLVD 414
             S    M+  GV PD+             + I EA  +F  +        +  +  L+D
Sbjct: 326 MHSFLDLMVRNGVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALID 385

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD-MEEKIR- 472
            LCK  R+  A   F ++   G  P++  ++ ++ GLC     EKA  L  + +++ IR 
Sbjct: 386 ALCKLGRVDDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRL 445

Query: 473 ----------------ECLKAIELLHKMAKRYVKPDEITVSIL 499
                             ++A  L+  M +  V+PD I+ + L
Sbjct: 446 NAAFFNILMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTL 488



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 163/380 (42%), Gaps = 56/380 (14%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  L++   F + M+    +P    FN +  A A K      + + +++    L P  V+
Sbjct: 320 EGALSEMHSFLDLMVRNGVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVN 379

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF---- 180
              L++  CK+  V DA +   +++ +  +PD+     L+ GLC   K+ +A  LF    
Sbjct: 380 YGALIDALCKLGRVDDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVL 439

Query: 181 ---------------------------TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN 213
                                       + +    R +V P+VI Y +++DG C  G ++
Sbjct: 440 DQGIRLNAAFFNILMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRID 499

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA---------KGNTSAALELHEEF 264
           +   L   M   G+ PD F YN+L+  YC A   +DA         KG T   +  +   
Sbjct: 500 EAAKLLDVMVSIGLKPDEFTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPGVVT-YNTI 558

Query: 265 VNGNGELGVICHP--------------DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
           ++G  ++G  C                D+ +Y  I+N LC++  VD+A ++F  + S+ +
Sbjct: 559 LHGLFQIGRFCEAKELYLNMINNRRKCDIYTYTIILNGLCRNNFVDEAFKMFQSLCSKDL 618

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
             D+   + +I      GR +DA  LF +I + G +PD  +Y  +  +  K   +EE   
Sbjct: 619 QLDIFTINIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYRLIAENLIKEGSLEELDE 678

Query: 371 LYGEMISMGVRPDNSCILEA 390
           L+  M   G  P NS +L A
Sbjct: 679 LFSAMEENGTAP-NSRMLNA 697



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 108/255 (42%), Gaps = 38/255 (14%)

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELF-LDMKSRGIIPDVVVYSSLIDGYCLMG 328
           E  V   P   +Y  +I   C+   +      F L +K+   + + V++  L+ G C   
Sbjct: 83  ECSVKVAPSSCTYTILIGCFCRMGRLKHGFAAFGLILKTGWSLNNTVIFGQLLKGLCDAK 142

Query: 329 RIDDARKLFVSIESE-GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
           R+D+A  + +    E GC  +  SYN L+      ++ EEAL L   M   G   D S  
Sbjct: 143 RVDEATDILLRRMPEFGCTLNVISYNILLKGLCNEKRAEEALELMHMMADDG---DGS-- 197

Query: 388 LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
                     H      ++  +  ++DGLCK+  +  A  +F+ +   G  PN  TYT +
Sbjct: 198 ----------HTP----NVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCL 243

Query: 448 ICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDE 507
           I G    G              K +E    +++L +M+   ++PD +  ++L + L K+ 
Sbjct: 244 IHGYLSTG--------------KWKE---VVQMLQEMSTHGLQPDCVIYAVLLDYLCKNG 286

Query: 508 NCHECMNLLPSFLSR 522
            C E  N+  S + +
Sbjct: 287 RCTEARNIFDSLIRK 301


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 135/551 (24%), Positives = 238/551 (43%), Gaps = 92/551 (16%)

Query: 22  RNSKKPISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHM 81
           RNS K + +++E  P+ L S        +T L+K L+ + K+G+   N++L F   +++ 
Sbjct: 55  RNSPK-VGVSAEARPAHLQSYDF----RETHLMKLLNRSCKAGK--FNESLYFLECLVNK 107

Query: 82  QPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL-----PDFVSLNILMNCFCKMI 136
             TP +     L+      K + NF  + +    + +L     PD  + N +++ FCK+ 
Sbjct: 108 GYTPDVILCTKLI------KGFFNFKNIEKASRVMEILESHTEPDVFAYNAVISGFCKVN 161

Query: 137 GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI--- 193
            +  A   L R+  + F PD+VT   +I  LC + K   A  +  + +  +C P VI   
Sbjct: 162 QIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYT 221

Query: 194 ----------------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225
                                       P++  Y +II G+CK+G V +   L   +  +
Sbjct: 222 ILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSK 281

Query: 226 GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSI 285
           G  PD   YN L+R +     W++ +   +      E F  G       C P+ ++Y  +
Sbjct: 282 GCEPDVISYNILLRAFLNQGKWDEGEKLVA------EMFSRG-------CEPNKVTYSIL 328

Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
           I+SLC+   +D+A  +   M  + + PD   Y  LI   C  GR+D A  +   + S GC
Sbjct: 329 ISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGC 388

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCIL---------EAAE 392
           +PD  +YNT++ +  K     +AL ++ ++  MG  P+    N+ I           A  
Sbjct: 389 LPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALG 448

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
           +   + +   + D   +N L+  LC+   +  A  L   + + G  P V++Y +++ GLC
Sbjct: 449 MVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLC 508

Query: 453 IEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHEC 512
                            K+R    AI +  +M ++  +P+E T  +L E +       E 
Sbjct: 509 -----------------KVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEA 551

Query: 513 MNLLPSFLSRN 523
           M L  S  SR+
Sbjct: 552 MELANSLFSRD 562



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 149/302 (49%), Gaps = 19/302 (6%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + S+N LL A   +  +     L   + + G  P+ V+ +IL++  C+   + +A   
Sbjct: 285 PDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISV 344

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           L  ++ K  +PD  +   LI  LC +G+   A G+    ++  C    +P+++ Y +I+ 
Sbjct: 345 LKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGC----LPDIVNYNTILA 400

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR-VYCCAVNWEDAKGNTSAALELHEE 263
            LCK+G  N+   +F  ++G G  P+   YN++I  ++ C        G+ S AL +   
Sbjct: 401 ALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSC--------GDRSRALGMVPA 452

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
            ++          PD ++Y S+I+ LC+D LV++A  L  DM+  G  P V+ Y+ ++ G
Sbjct: 453 MISKG------IDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLG 506

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            C + RIDDA  +F  +  +GC P+ ++Y  LI          EA+ L   + S  V   
Sbjct: 507 LCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSLFSRDVISQ 566

Query: 384 NS 385
           +S
Sbjct: 567 DS 568



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 114/266 (42%), Gaps = 45/266 (16%)

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           ++N  CK    +++      + ++G  PDV++ + LI G+     I+ A ++   +ES  
Sbjct: 84  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESH- 142

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL 404
             PD  +YN +I+ + K+ ++E A  +   M + G  P                      
Sbjct: 143 TEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLP---------------------- 180

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD-- 462
           D+  +N ++  LC   +L  A  +  +L      P V+TYT++I    +EGGI +A    
Sbjct: 181 DIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLL 240

Query: 463 -------LLPDM-----------EEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLN 504
                  LLPDM           +E + E  +A EL+  +  +  +PD I+ +IL     
Sbjct: 241 EEMLARGLLPDMYTYNAIIRGMCKEGMVE--RAAELITSLTSKGCEPDVISYNILLRAFL 298

Query: 505 KDENCHECMNLLPSFLSRNQEESKLT 530
                 E   L+    SR  E +K+T
Sbjct: 299 NQGKWDEGEKLVAEMFSRGCEPNKVT 324


>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
 gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
          Length = 841

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 128/490 (26%), Positives = 224/490 (45%), Gaps = 85/490 (17%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A   +N M +   +P + + NSL+      +       L +     G+   F + N 
Sbjct: 380 MDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACGIANVF-TYNS 438

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++  CK   +S+A     +++RK   P VV+   +I G C QG    A+G+F + +   
Sbjct: 439 LLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEML--- 495

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR-------- 239
               + PN+I Y+ ++DG  K G       L+  M+G  I P  F  N +I         
Sbjct: 496 -EKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRT 554

Query: 240 --------------------VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDV 279
                                Y C ++    +G+ ++AL ++ E      ++GV   P+V
Sbjct: 555 SESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMC----KIGV--SPNV 608

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
            +Y ++IN  CK   +D A ++  +MK++GI  DV VY +LIDG+C  G + +A +L   
Sbjct: 609 FTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSE 668

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN 399
           ++  G  P+   Y+++I+ + K++ +E AL L+  MI+ G+                   
Sbjct: 669 LQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGI------------------- 709

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
                DL ++  L+ GL K  +L  A EL+ ++   G  P+++TY+V+I GLC +G +E 
Sbjct: 710 ---PCDLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLEN 766

Query: 460 AYDLLPDMEEKIRECL---------------------KAIELLHKMAKRYVKPDEITVSI 498
           A  +L DM+   R+C+                     +A  L ++M  + + PD+ T  I
Sbjct: 767 AQKILEDMD---RKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPDDTTYDI 823

Query: 499 LEELLNKDEN 508
           L     KD N
Sbjct: 824 LVNGKVKDGN 833



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 108/410 (26%), Positives = 189/410 (46%), Gaps = 38/410 (9%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLL--GALAGKKYYVN--FICLSERLNTIGLLP 120
           E ++++A   +  M+     P + S+N+++      G     N  F+ + E+    GL P
Sbjct: 446 EGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEK----GLKP 501

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           + ++ ++LM+ + K      AF    R+  +  +P   T   +I GLC  G+ +E+    
Sbjct: 502 NLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRL 561

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            K V    +   IP  + Y  IIDG  K+G VN    ++ +M   G+ P+ F Y +LI  
Sbjct: 562 KKLV----QEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLING 617

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
           +C          N   AL++ +E  N   EL      DV  YC++I+  C+   +  A +
Sbjct: 618 FC-------KSNNMDLALKVMDEMKNKGIEL------DVTVYCALIDGFCRKGDMVNASQ 664

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           L  +++  G+ P+ VVYSS+I G+  +  ++ A  L   + +EG   D   Y TLI+   
Sbjct: 665 LLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLL 724

Query: 361 KIEKVEEALSLYGEMISMGVRPD------------NSCILEAAE-LFRTLHNTKFELDLT 407
           K  K+  A  LY EM++ G+ PD            N   LE A+ +   +        + 
Sbjct: 725 KEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVF 784

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
           ++N L+ G  K   L+ A+ L  ++   G  P+  TY +++ G   +G +
Sbjct: 785 IYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKVKDGNL 834



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 166/385 (43%), Gaps = 48/385 (12%)

Query: 90  FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149
           FN LL +    K   + +     L    ++P    +NI ++   K   + +A     ++ 
Sbjct: 157 FNYLLNSYVKTKRINDAVDCFNSLIEKDIVPCLTVMNIFLSELVKNNMIREARDVYNKMA 216

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLF----TKFVAFDCRPNVIPNVICYASIIDG 205
            K    D  T+  +IR    +GK  EA G F     K V  D R         Y+ +I+ 
Sbjct: 217 SKGVKGDCATISVMIRASMREGKLEEAEGWFREAKNKGVELDAR--------AYSIVIEA 268

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
           +CK         L  +M+ +G  P   ++  +I V  C       +G    A+++  E +
Sbjct: 269 VCKKPDSVAALGLLREMRDKGWVPHEVIFTRVIGV--CM-----KQGKMLEAVKVKGEML 321

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
           +    + V+         +++   CK   +D A ELF  M   GI P+ V Y+ +I+  C
Sbjct: 322 SCGKPMNVVVA------TTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCC 375

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
             G +D A +++  ++++   P   + N+LI  Y K    EEA  L+ E ++ G+     
Sbjct: 376 KNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACGI----- 430

Query: 386 CILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
                A +F              +N L+  LCK  ++  A  +++K+ R G  P+VV+Y 
Sbjct: 431 -----ANVF-------------TYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYN 472

Query: 446 VMICGLCIEGGIEKAYDLLPDMEEK 470
            MI G C +G ++ A  +  +M EK
Sbjct: 473 NMILGHCQQGDMDSANGVFVEMLEK 497


>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
 gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
          Length = 796

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 112/406 (27%), Positives = 185/406 (45%), Gaps = 58/406 (14%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           ERL+T   LPD V+ N L++   K    SDA   L  +  K   P +VT   +++ LC +
Sbjct: 340 ERLSTA--LPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKE 397

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           GK  EA G   K         + P+VI Y ++ID  CK G V K   L  +M G+G+  D
Sbjct: 398 GKLEEALGKLEKI----AEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMD 453

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
            F  N+++   C    +EDA           EE ++   + G +  PD +SY +++ +  
Sbjct: 454 TFTLNTVLYNLCKMKRYEDA-----------EELLHSPPQRGFV--PDEVSYGTVMAAYF 500

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K+   + A  L+  M  R +IP +  Y++LI G C M R+ +A      +  +G +PD +
Sbjct: 501 KEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDET 560

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFN 410
           +YN +I++Y K   +E A   + +M+    +PD                      +   N
Sbjct: 561 TYNIIIHAYCKEGDLENAFRFHNKMVENSFKPD----------------------VVTCN 598

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            L++GLC   +L  A +LF+     G + +V+TY  +I  +C  G ++ A     DME K
Sbjct: 599 TLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVK 658

Query: 471 IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                             ++PD  T +++   L++     E  N+L
Sbjct: 659 -----------------GLQPDAFTYNVVLSALSEAGRSEEAHNML 687



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/428 (23%), Positives = 184/428 (42%), Gaps = 58/428 (13%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           +DAL     M      P + + N ++ +L  +      +   E++   GL PD ++ N L
Sbjct: 366 SDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTL 425

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK------ 182
           ++ +CK   V+ AF  +  ++ K    D  TL  ++  LC   ++ +A  L         
Sbjct: 426 IDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGF 485

Query: 183 --------------FVAFDCRP-----------NVIPNVICYASIIDGLCKDGFVNKVRV 217
                         F  ++  P            +IP++  Y ++I GLC+   + +   
Sbjct: 486 VPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAID 545

Query: 218 LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277
              ++  +G+ PD   YN +I  YC        +G+   A   H + V  + +      P
Sbjct: 546 KLNELVEKGLVPDETTYNIIIHAYC-------KEGDLENAFRFHNKMVENSFK------P 592

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           DV++  +++N LC    +DKA +LF     +G   DV+ Y++LI   C +G +D A   F
Sbjct: 593 DVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFF 652

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG-VRPDNSCIL----EAAE 392
             +E +G  PD  +YN ++++ S+  + EEA ++  ++   G +    +C L     A E
Sbjct: 653 DDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGKLSQSFACPLLKPSSADE 712

Query: 393 LFRTLHNTKFELD---------LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                H  K E +         L  +   ++GLC   +L+ A  +  ++ + G   +  T
Sbjct: 713 ADVKEHEGKPEAESSEKAQDNALETYMERLNGLCTGGQLKEAKAVLDEMMQKGMPVDSST 772

Query: 444 YTVMICGL 451
           Y  ++ GL
Sbjct: 773 YITLMEGL 780



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 50/114 (43%)

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           L++S  +   V  +L     ++S   R  ++    + ++FR+L   +   +   FN LV 
Sbjct: 157 LLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNLLVH 216

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
             C    L  A      +  +G  P+ VTY  ++   C +G + +A  LL  M+
Sbjct: 217 THCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMK 270


>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
 gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
          Length = 833

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 137/542 (25%), Positives = 233/542 (42%), Gaps = 129/542 (23%)

Query: 52  KLLKYLSENSKSGEVELNDALCFFNYMI-HMQPTPFMPSFNSLLGALA---GKKYYVNF- 106
           +L +++++ ++SG +  +DAL  F+ ++ H +P   + +FN LL A++   G+   +   
Sbjct: 116 QLERFIADRAQSGSLASHDALKLFDLLLPHARPAS-VTAFNHLLTAVSRASGRHSTLESQ 174

Query: 107 --ICLSERLN---TIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLG 161
             I L +R+    +  + PD  + +IL+ CFC+M  +   F   G IL+  +  + +   
Sbjct: 175 LGISLFDRMVRECSDKVAPDRCTYSILIGCFCRMGRLEHGFAVFGLILKTGWRVNHIVFN 234

Query: 162 CLIRGLCMQGKFTEASG-LFTKFVAFDCRPNVI--------------------------- 193
            L++GLC   +  EA+  L  +   F C PNV+                           
Sbjct: 235 QLLKGLCDAKRLDEATNILLWRMPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMAD 294

Query: 194 -------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                  P+V+ Y ++I+G  ++G V+K   LFL M  RGI PD   YN++I   C A  
Sbjct: 295 DQGLSCPPDVVSYNTVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQV 354

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICH------------------------PDVLSY 282
            + AK      L+  +     NG    + H                        PD   Y
Sbjct: 355 VDRAKAVFQQMLD--KGVKPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIY 412

Query: 283 CSIINSLCK---------------------DVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
             +++ LCK                     D ++D+A  +F  M+ +G+ P+VV Y +LI
Sbjct: 413 ALLLDYLCKNGRCTEARNIFDSVIRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGALI 472

Query: 322 DGYCLMGRIDD-----------------------ARKLFVSIESEGCIPDTSSYNTLINS 358
           D  C +GR+DD                       A +L   +  +G   D   +NTL+  
Sbjct: 473 DALCKLGRVDDAILKFNQMINEVYGLCTVEKWEKAEELVFEMLDQGIRLDVVVFNTLMCD 532

Query: 359 YSKIEKVEEALSLYGEMISMGVRP---------DNSCIL----EAAELFRTLHNTKFELD 405
             +  +V EA  L   M+ +GVRP         D  C+     EAA+L   + +   + +
Sbjct: 533 LCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPN 592

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
              +N L+ G CK+ R+  A+ L +++   GP P+VVTY  ++ GL   G   +A +L  
Sbjct: 593 EFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTGRFSEAKELYL 652

Query: 466 DM 467
           +M
Sbjct: 653 NM 654



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 128/444 (28%), Positives = 214/444 (48%), Gaps = 71/444 (15%)

Query: 85  PFMPSFNSLLGALAGK----KYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSD 140
           P + S+N+++     +    K Y  F+ + +R    G+ PD V+ N +++  CK   V  
Sbjct: 302 PDVVSYNTVINGFFREGQVDKAYNLFLQMIDR----GIPPDVVTYNTVIDGLCKAQVVDR 357

Query: 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200
           A     ++L K   P   T  CLI G    GK+ E   L  +    D  P+       YA
Sbjct: 358 AKAVFQQMLDKGVKPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCF----IYA 413

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV---------------------YNSLIR 239
            ++D LCK+G   + R +F  +  +GI PDA +                     Y +LI 
Sbjct: 414 LLLDYLCKNGRCTEARNIFDSVIRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGALID 473

Query: 240 VYCCAVNWEDA--KGN----------TSAALELHEEFVNGNGELGVICHPDVLSYCSIIN 287
             C     +DA  K N          T    E  EE V    + G+    DV+ + +++ 
Sbjct: 474 ALCKLGRVDDAILKFNQMINEVYGLCTVEKWEKAEELVFEMLDQGI--RLDVVVFNTLMC 531

Query: 288 SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
            LC++  V +A+ L   M   G+ PDV+ Y++L+DG+CL GR D+A KL   + S G  P
Sbjct: 532 DLCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKP 591

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCIL----------EAAELF 394
           +  +YNTL++ Y K  ++++A SL  EM+  G  PD    + IL          EA EL+
Sbjct: 592 NEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTGRFSEAKELY 651

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
             + N++ + D+  +N +++GLCK+  +  A+++F+ L   G + +++T+ +MI G  ++
Sbjct: 652 LNMINSRTQWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHIITFNIMI-GALLK 710

Query: 455 GGIEK----------AYDLLPDME 468
           GG ++          AY L+PD+E
Sbjct: 711 GGKKEDAMDLFATISAYGLVPDVE 734



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 166/387 (42%), Gaps = 62/387 (16%)

Query: 107 ICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSP----------- 155
           +C+ +++   GL P+ V+   L++  CK+  V DA +   +++ +V+             
Sbjct: 450 VCIFDKMRQQGLSPNVVNYGALIDALCKLGRVDDAILKFNQMINEVYGLCTVEKWEKAEE 509

Query: 156 ------------DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
                       DVV    L+  LC +G+  EA     + +    R  V P+VI Y +++
Sbjct: 510 LVFEMLDQGIRLDVVVFNTLMCDLCREGRVMEAQ----RLIELMLRVGVRPDVISYNTLV 565

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
           DG C  G  ++   L   M   G+ P+ F YN+L+  YC A   +DA         L E 
Sbjct: 566 DGHCLTGRTDEAAKLLDVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYS------LLREM 619

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
            +NG         PDV++Y +I++ L +     +AKEL+L+M +     D+  Y+ +++G
Sbjct: 620 LMNGP-------TPDVVTYNTILHGLFQTGRFSEAKELYLNMINSRTQWDMYTYNIILNG 672

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            C    +D+A K+F S+ S+G      ++N +I +  K  K E+A+              
Sbjct: 673 LCKNNCVDEAFKMFQSLCSKGLQLHIITFNIMIGALLKGGKKEDAM-------------- 718

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                   +LF T+       D+  +  + + L K   L     LF  +   G  PN   
Sbjct: 719 --------DLFATISAYGLVPDVETYCLIAENLIKEGSLEELGVLFSAMEENGTAPNSRM 770

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEK 470
              ++      G I +A   L  ++EK
Sbjct: 771 LNALVRRFLHRGDISRAGAYLSKLDEK 797



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 117/246 (47%), Gaps = 43/246 (17%)

Query: 282 YCSIINSLCKDVLVDKAKELFL-DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF-VS 339
           +  ++  LC    +D+A  + L  M   G  P+VV Y++L+ G+C   R ++A +L  V 
Sbjct: 233 FNQLLKGLCDAKRLDEATNILLWRMPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVM 292

Query: 340 IESEG--CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397
            + +G  C PD  SYNT+IN + +  +V++A +L+ +MI  G+ PD              
Sbjct: 293 ADDQGLSCPPDVVSYNTVINGFFREGQVDKAYNLFLQMIDRGIPPD-------------- 338

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                   +  +N ++DGLCK+  +  A  +F+++   G +P+  TY  +I G    G  
Sbjct: 339 --------VVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGVKPSNGTYNCLIHGYLSTG-- 388

Query: 458 EKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLP 517
                       K +E    + LL +M+   ++PD    ++L + L K+  C E  N+  
Sbjct: 389 ------------KWKE---VVRLLEEMSTHDLEPDCFIYALLLDYLCKNGRCTEARNIFD 433

Query: 518 SFLSRN 523
           S + + 
Sbjct: 434 SVIRKG 439



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 139/307 (45%), Gaps = 17/307 (5%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  + +A      M+ +   P + S+N+L+              L + + +IGL P+  +
Sbjct: 536 EGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPNEFT 595

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N L++ +CK   + DA+  L  +L    +PDVVT   ++ GL   G+F+EA  L+   +
Sbjct: 596 YNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTGRFSEAKELYLNMI 655

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
                     ++  Y  I++GLCK+  V++   +F  +  +G+      +N +I      
Sbjct: 656 ----NSRTQWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHIITFNIMIGALLKG 711

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
              EDA       ++L           G++  PDV +YC I  +L K+  +++   LF  
Sbjct: 712 GKKEDA-------MDLFATI----SAYGLV--PDVETYCLIAENLIKEGSLEELGVLFSA 758

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M+  G  P+  + ++L+  +   G I  A      ++ +    + S+ + LI+ YS+ E 
Sbjct: 759 MEENGTAPNSRMLNALVRRFLHRGDISRAGAYLSKLDEKNFSLEASTASMLISLYSRGEY 818

Query: 365 VEEALSL 371
            + A SL
Sbjct: 819 QQLAKSL 825


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 112/423 (26%), Positives = 190/423 (44%), Gaps = 73/423 (17%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+LPD V    L++ FCK   +  A      +  +  +PDV+T   +I G C  G   EA
Sbjct: 346 GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEA 405

Query: 177 SGLFTKFVAFDCRPNVI-------------------------------PNVICYASIIDG 205
             LF +       P+ +                               PNV+ Y ++IDG
Sbjct: 406 GKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDG 465

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
           LCK+G ++    L  +M   G+ P+ F YNS++   C         GN   A++L  EF 
Sbjct: 466 LCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLC-------KSGNIEEAVKLVGEFE 518

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
                     + D ++Y +++++ CK   +DKA+E+  +M  +G+ P +V ++ L++G+C
Sbjct: 519 AAG------LNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFC 572

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
           L G ++D  KL   + ++G  P+ +++N+L+  Y     ++ A ++Y +M S GV PD  
Sbjct: 573 LHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDG- 631

Query: 386 CILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
                    +T  N            LV G CK+  ++ AW LF+++   G   +V TY+
Sbjct: 632 ---------KTYEN------------LVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYS 670

Query: 446 VMICGLCIEGGIEKAYDLLPDMEEKIRECLKA----IELLHKMAKRYVKPDEITVSILEE 501
           V+I G        +A ++   M    RE L A     +       +  +PD I   I E 
Sbjct: 671 VLIKGFLKRKKFLEAREVFDQMR---REGLAADKEIFDFFSDTKYKGKRPDTIVDPIDEI 727

Query: 502 LLN 504
           + N
Sbjct: 728 IEN 730



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 184/375 (49%), Gaps = 30/375 (8%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L E +   GL P+      ++   C++  +++A  A   ++R+   PD V    LI G C
Sbjct: 303 LIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFC 362

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
            +G    AS  F +  + D    + P+V+ Y +II G C+ G + +   LF +M  +G+ 
Sbjct: 363 KRGDIRAASKFFYEMHSRD----ITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLE 418

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           PD+  +  LI  YC A       G+   A  +H   +         C P+V++Y ++I+ 
Sbjct: 419 PDSVTFTELINGYCKA-------GHMKDAFRVHNHMIQAG------CSPNVVTYTTLIDG 465

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           LCK+  +D A EL  +M   G+ P++  Y+S+++G C  G I++A KL    E+ G   D
Sbjct: 466 LCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNAD 525

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSCI---LEAAE-LFR 395
           T +Y TL+++Y K  ++++A  +  EM+  G++P         +  C+   LE  E L  
Sbjct: 526 TVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLN 585

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            +       + T FN LV   C    L++A  ++K +   G  P+  TY  ++ G C   
Sbjct: 586 WMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKAR 645

Query: 456 GIEKAYDLLPDMEEK 470
            +++A+ L  +M+ K
Sbjct: 646 NMKEAWFLFQEMKGK 660



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 120/432 (27%), Positives = 197/432 (45%), Gaps = 48/432 (11%)

Query: 116 IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
           +G+  +  S NI+++  C++  + +A   L  +  K ++PDV++   ++ G C  G+  +
Sbjct: 240 VGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDK 299

Query: 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
                 K +    R  + PN   Y SII  LC+   + +    F +M  +GI PD  VY 
Sbjct: 300 V----WKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYT 355

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           +LI  +C        +G+  AA +   E  + +        PDVL+Y +II+  C+   +
Sbjct: 356 TLIDGFC-------KRGDIRAASKFFYEMHSRD------ITPDVLTYTAIISGFCQIGDM 402

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
            +A +LF +M  +G+ PD V ++ LI+GYC  G + DA ++   +   GC P+  +Y TL
Sbjct: 403 VEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTL 462

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKF 402
           I+   K   ++ A  L  EM  +G++P+             +  I EA +L         
Sbjct: 463 IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGL 522

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
             D   +  L+D  CKS  +  A E+ K++   G +P +VT+ V++ G C+ G +E    
Sbjct: 523 NADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEK 582

Query: 463 LLPDMEEK-----------------IRECLKAIELLHK-MAKRYVKPDEITVSILEELLN 504
           LL  M  K                 IR  LKA   ++K M  R V PD  T   L +   
Sbjct: 583 LLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHC 642

Query: 505 KDENCHECMNLL 516
           K  N  E   L 
Sbjct: 643 KARNMKEAWFLF 654



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 163/370 (44%), Gaps = 39/370 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++  A  FF  M     TP + ++ +++         V    L   +   GL PD V+  
Sbjct: 366 DIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFT 425

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+N +CK   + DAF     +++   SP+VVT   LI GLC +G    A+ L  +    
Sbjct: 426 ELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEM--- 482

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             +  + PN+  Y SI++GLCK G + +   L  + +  G+  D   Y +L+  YC    
Sbjct: 483 -WKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYC---- 537

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G    A E+ +E       LG    P ++++  ++N  C   +++  ++L   M 
Sbjct: 538 ---KSGEMDKAQEILKEM------LGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWML 588

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           ++GI P+   ++SL+  YC+   +  A  ++  + S G  PD  +Y  L+  + K   ++
Sbjct: 589 AKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMK 648

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           EA  L+ EM   G                      F + ++ ++ L+ G  K  +   A 
Sbjct: 649 EAWFLFQEMKGKG----------------------FSVSVSTYSVLIKGFLKRKKFLEAR 686

Query: 427 ELFKKLPRYG 436
           E+F ++ R G
Sbjct: 687 EVFDQMRREG 696



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 138/314 (43%), Gaps = 71/314 (22%)

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
           T+ A+ +  EF     E+GV    +V SY  +I+ +C+   + +A  L L M+ +G  PD
Sbjct: 227 TATAIIVFREF----PEVGVCW--NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPD 280

Query: 314 VVVYSSLIDGYCLMGRIDDARKL-----------------------------------FV 338
           V+ YS++++GYC  G +D   KL                                   F 
Sbjct: 281 VISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFS 340

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---------NSC--- 386
            +  +G +PDT  Y TLI+ + K   +  A   + EM S  + PD           C   
Sbjct: 341 EMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIG 400

Query: 387 -ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
            ++EA +LF  +     E D   F  L++G CK+  ++ A+ +   + + G  PNVVTYT
Sbjct: 401 DMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYT 460

Query: 446 VMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505
            +I GLC EG ++ A                  ELLH+M K  ++P+  T + +   L K
Sbjct: 461 TLIDGLCKEGDLDSAN-----------------ELLHEMWKIGLQPNIFTYNSIVNGLCK 503

Query: 506 DENCHECMNLLPSF 519
             N  E + L+  F
Sbjct: 504 SGNIEEAVKLVGEF 517



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 120/315 (38%), Gaps = 54/315 (17%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G+++  + L    + I +QP  F  ++NS++  L         + L       GL  D
Sbjct: 468 KEGDLDSANELLHEMWKIGLQPNIF--TYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNAD 525

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+   LM+ +CK   +  A   L  +L K   P +VT   L+ G C+ G   +   L  
Sbjct: 526 TVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLN 585

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
             +A      + PN   + S++   C    +     ++ DM  RG+ PD   Y +L++ +
Sbjct: 586 WMLA----KGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGH 641

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C A N ++A                                                  L
Sbjct: 642 CKARNMKEAWF------------------------------------------------L 653

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F +MK +G    V  YS LI G+    +  +AR++F  +  EG   D   ++   ++  K
Sbjct: 654 FQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYK 713

Query: 362 IEKVEEALSLYGEMI 376
            ++ +  +    E+I
Sbjct: 714 GKRPDTIVDPIDEII 728


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 111/361 (30%), Positives = 175/361 (48%), Gaps = 27/361 (7%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL P+ V    L++ +CK   + +AF     +  K  SP+  T   LI GLC   +  EA
Sbjct: 455 GLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEA 514

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
           + LF + V +    NVIPN + Y  +I+G CK+G   +   L  +M  +G+ PD + Y  
Sbjct: 515 NKLFGEMVEW----NVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRP 570

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI--CHPDVLSYCSIINSLCKDVL 294
           LI   C       + G  S A E   +      +L  I  C P+V++Y ++IN LCK  L
Sbjct: 571 LISGLC-------STGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGL 623

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           +DKA+ L  +M +   +P+   Y+  +D     G I+ A +L   +  EG + +T +YN 
Sbjct: 624 MDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLH-DVLLEGFLANTVTYNI 682

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPD---NSCIL----------EAAELFRTLHNTK 401
           LI  + K+ +++EA  +   MI  G+ PD    S I+          EA +L+ ++ N  
Sbjct: 683 LIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRG 742

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
              D   +N L+ G C +  L  A+EL   + R G +PN  TY  +I G C+   +    
Sbjct: 743 VNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLMSSVSSTA 802

Query: 462 D 462
           D
Sbjct: 803 D 803



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 121/421 (28%), Positives = 192/421 (45%), Gaps = 55/421 (13%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL P+ V+ +IL++ FCK   +  A   LG++        V     LI G C  GK   A
Sbjct: 385 GLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAA 444

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             LF + +A   +PNV+     Y S+I G CK+G ++    L+ +M G+GI P+ + + +
Sbjct: 445 KSLFDEMIANGLKPNVV----IYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTA 500

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI   C A    +A        +L  E V    E  VI  P+ ++Y  +I   CK+    
Sbjct: 501 LISGLCHANRMAEAN-------KLFGEMV----EWNVI--PNEVTYNVLIEGHCKEGNTV 547

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE--------GCIPD 348
           +A EL  +M  +G++PD   Y  LI G C  GR+ +AR+    ++ E        GC+P+
Sbjct: 548 RAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPN 607

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---SCILEA------AELFRTLHN 399
             +Y  LIN   KI  +++A  L  EM++    P+    +C L+        E    LH+
Sbjct: 608 VVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHD 667

Query: 400 TKFE---LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
              E    +   +N L+ G CK  R++ A E+   +   G  P+ ++Y+ +I   C  G 
Sbjct: 668 VLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGD 727

Query: 457 IEKAYDLLPDMEEK------------------IRECLKAIELLHKMAKRYVKPDEITVSI 498
           +++A  L   M  +                    E  KA EL   M +R VKP+  T + 
Sbjct: 728 LKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNS 787

Query: 499 L 499
           L
Sbjct: 788 L 788



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 112/414 (27%), Positives = 185/414 (44%), Gaps = 30/414 (7%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           D L     M+     P + + + +L  L   + +   + L + + + GL PD      ++
Sbjct: 163 DGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVV 222

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
              C++     A   +GR+        V T    IRGLC   +  EA  +         R
Sbjct: 223 RSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLR 282

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
            +V      Y +++ GLCK         +  +M   G  P     ++L       V+   
Sbjct: 283 ADVGT----YCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNL-------VDGLR 331

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
            KGN  +A +L    VN   + GV   P +  Y ++INS+CKD  +D+A+ LF +M  +G
Sbjct: 332 KKGNIGSAFDL----VNKVKKFGVA--PSLFVYNALINSMCKDGKLDEAESLFNNMGHKG 385

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
           + P+ V YS LID +C  G++D A      +   G       Y++LI+ + K+ K+  A 
Sbjct: 386 LFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAK 445

Query: 370 SLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           SL+ EMI+ G++P+                +  A  L+  +       +   F  L+ GL
Sbjct: 446 SLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGL 505

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           C + R+  A +LF ++  +   PN VTY V+I G C EG   +A++LL +M EK
Sbjct: 506 CHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEK 559



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 154/325 (47%), Gaps = 18/325 (5%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E EL++A   ++ M     +P   +F +L+  L           L   +    ++P+ V+
Sbjct: 473 EGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVT 532

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N+L+   CK      AF  L  ++ K   PD  T   LI GLC  G+ +EA        
Sbjct: 533 YNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQ 592

Query: 185 AFDCRPNVI----PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
               + N I    PNV+ Y ++I+GLCK G ++K  +L  +M      P+          
Sbjct: 593 GEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQ-------NT 645

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
           Y C +++  ++GN   A++LH+  + G          + ++Y  +I   CK   + +A E
Sbjct: 646 YACFLDYLTSEGNIEKAIQLHDVLLEG-------FLANTVTYNILIRGFCKLGRIQEAAE 698

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           + ++M   GI PD + YS++I  YC  G + +A KL+ S+ + G  PDT +YN LI    
Sbjct: 699 VLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCC 758

Query: 361 KIEKVEEALSLYGEMISMGVRPDNS 385
              ++ +A  L  +M+  GV+P+ +
Sbjct: 759 VTGELTKAFELRDDMMRRGVKPNRA 783



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 114/444 (25%), Positives = 185/444 (41%), Gaps = 55/444 (12%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G +P   +++ L++   K   +  AF  + ++ +   +P +     LI  +C  GK  EA
Sbjct: 315 GFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEA 374

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             LF           + PN + Y+ +ID  CK G ++        M   GI    + Y+S
Sbjct: 375 ESLFNNM----GHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSS 430

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI  +C         G   AA  L +E +  NG       P+V+ Y S+I+  CK+  + 
Sbjct: 431 LISGHC-------KLGKLRAAKSLFDEMI-ANG-----LKPNVVIYTSLISGYCKEGELH 477

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A  L+ +M  +GI P+   +++LI G C   R+ +A KLF  +     IP+  +YN LI
Sbjct: 478 NAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLI 537

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFE 403
             + K      A  L  EM+  G+ PD                + EA E    L   + +
Sbjct: 538 EGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQK 597

Query: 404 L--------DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
           L        ++  +  L++GLCK   +  A  L +++      PN  TY   +  L  EG
Sbjct: 598 LNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEG 657

Query: 456 GIEKA-----------------YDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSI 498
            IEKA                 Y++L     K+    +A E+L  M    + PD I+ S 
Sbjct: 658 NIEKAIQLHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYST 717

Query: 499 LEELLNKDENCHECMNLLPSFLSR 522
           +     +  +  E + L  S L+R
Sbjct: 718 IIYEYCRRGDLKEAIKLWESMLNR 741



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 107/266 (40%), Gaps = 47/266 (17%)

Query: 281 SYCSIINSLCKDVLVDKAK-----------------ELFLDMKSRGIIPDVVVYSSLIDG 323
           S+C +I++L +  L   A                  E FLD   +      + +  LI  
Sbjct: 95  SFCILIHALVQSNLYWPASSLLQTLLLRGLNPEGLFESFLDSYRKCNFSTTLGFDLLIQT 154

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           Y    R  D   +   +   G +P   + + ++N   +I +   AL L+ E++S G+RPD
Sbjct: 155 YVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPD 214

Query: 384 ---------NSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
                    + C     + A E+   + ++  +L +  +N  + GLCK+ R+  A E+  
Sbjct: 215 VYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKN 274

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVK 490
            L   G   +V TY  ++ GLC                 K+ E     E++++M +    
Sbjct: 275 LLSYKGLRADVGTYCTLVLGLC-----------------KVEEFEAGEEMMNEMIEFGFV 317

Query: 491 PDEITVSILEELLNKDENCHECMNLL 516
           P E  VS L + L K  N     +L+
Sbjct: 318 PSEAAVSNLVDGLRKKGNIGSAFDLV 343


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 113/417 (27%), Positives = 188/417 (45%), Gaps = 33/417 (7%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           +D   FF  MI     P + ++N ++  +  +        L E +   GL+PD V+ N +
Sbjct: 112 DDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSM 171

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           ++ F K+  + D       +      PDV+T   LI   C  GK       + +      
Sbjct: 172 IDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGL 231

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
           +PNV+     Y++++D  CK+G + +    ++DM+  G+ P+ + Y SLI   C   N  
Sbjct: 232 KPNVVS----YSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLS 287

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
           DA             F  GN  L V    +V++Y ++I+ LC    + +A+ELF  M + 
Sbjct: 288 DA-------------FRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTA 334

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G+IP++  Y++LI G+     +D A +L   ++  G  PD   Y T I     +EK+E A
Sbjct: 335 GVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAA 394

Query: 369 LSLYGEMISMGVRPDNSCIL--------------EAAELFRTLHNTKFELDLTVFNCLVD 414
             +  EM   G++  NS I               E   L   +     E+ +  F  L+D
Sbjct: 395 KVVMNEMKECGIKA-NSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLID 453

Query: 415 GLCKSWRLRSAWELFKKLPR-YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           GLCK+  +  A + F ++   +G + N   +T MI GLC +  +E A  L   M +K
Sbjct: 454 GLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQK 510



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 125/253 (49%), Gaps = 31/253 (12%)

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
           +G    P V +Y  +I+ +CK+  V+ A+ LF +MK RG++PD V Y+S+IDG+  +GR+
Sbjct: 122 IGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRL 181

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------- 383
           DD    F  ++   C PD  +YN LIN + K  K+   L  Y EM   G++P+       
Sbjct: 182 DDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTL 241

Query: 384 ------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
                    + +A + +  +       +   +  L+D  CK   L  A+ L  ++ + G 
Sbjct: 242 VDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGV 301

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIE 479
           E NVVTYT +I GLC    +++A +L   M+                   K +   +A+E
Sbjct: 302 EWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALE 361

Query: 480 LLHKMAKRYVKPD 492
           LL+++  R +KPD
Sbjct: 362 LLNELKGRGIKPD 374



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 103/394 (26%), Positives = 161/394 (40%), Gaps = 75/394 (19%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
            L F+  M      P + S+++L+ A   +      I     +  +GL+P+  +   L++
Sbjct: 219 GLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLID 278

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
             CK+  +SDAF     +L+     +VVT   LI GLC   +  EA  LF K        
Sbjct: 279 ANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDT----A 334

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
            VIPN+  Y ++I G  K   +++   L  ++KGRGI PD  +Y + I   C     E A
Sbjct: 335 GVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAA 394

Query: 251 K----------------------------GNTSAALELHEEFVNGNGELGVI-------- 274
           K                            GN +  L L +E    + E+ V+        
Sbjct: 395 KVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDG 454

Query: 275 -CHPDVLS---------------------YCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
            C   ++S                     + ++I+ LCKD  V+ A  LF  M  +G++P
Sbjct: 455 LCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVP 514

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
           D   Y+SL+DG    G + +A  L   +   G   D  +Y +L+   S   ++++A S  
Sbjct: 515 DRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFL 574

Query: 373 GEMISMGVRPDN-------------SCILEAAEL 393
            EMI  G+ PD               CI EA EL
Sbjct: 575 EEMIGEGIHPDEVLCISVLKKHYELGCIDEAVEL 608


>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
          Length = 761

 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 116/361 (32%), Positives = 177/361 (49%), Gaps = 30/361 (8%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL PD  +   L+  +     +      L  ++R    PD      LI     QGK  EA
Sbjct: 301 GLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEA 360

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             +F+K      +  + P+ + Y ++I  LCK G V    + F  M   G+ P   VYNS
Sbjct: 361 MLVFSKMR----QQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNS 416

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI   C    WE A+       EL  E ++       IC  + + + SII+S CK+  V 
Sbjct: 417 LIHGLCTCNKWERAE-------ELILEMLDRG-----IC-LNTIFFNSIIDSHCKEGRVI 463

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           ++++LF  M   G+ PD++ YS+LIDGYCL G++D+A KL   + S G  P+T +Y TLI
Sbjct: 464 ESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLI 523

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD---NSCILE----------AAELFRTLHNTKFE 403
           N Y KI ++ +AL L+ EM S GV PD    + IL+          A EL+  +  +  +
Sbjct: 524 NGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQ 583

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
           ++L+ +N ++ GLCK+     A  +F+ L     +    T+ +MI  L   G   +A DL
Sbjct: 584 IELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNGEAKDL 643

Query: 464 L 464
            
Sbjct: 644 F 644



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 115/424 (27%), Positives = 193/424 (45%), Gaps = 32/424 (7%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + ++ +LL   A K   V    L + +   G+ PD    NIL+  + K   V +A + 
Sbjct: 304 PDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLV 363

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
             ++ ++  +PD VT G +I  LC  G+  +A   F + +       + P  I Y S+I 
Sbjct: 364 FSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMI----DEGLSPGNIVYNSLIH 419

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           GLC      +   L L+M  RGI  +   +NS+I  +C        +G    + +L +  
Sbjct: 420 GLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHC-------KEGRVIESEKLFDLM 472

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           V     +GV   PD+++Y ++I+  C    +D+A +L   M S G+ P+ V Y +LI+GY
Sbjct: 473 V----RIGV--KPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGY 526

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD- 383
           C + R+ DA  LF  +ES G  PD  +YN ++    +  +   A  LY  +   G + + 
Sbjct: 527 CKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIEL 586

Query: 384 ------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
                       N    +A  +F+ L     +L+   FN ++D L K  R   A +LF  
Sbjct: 587 STYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNGEAKDLFVA 646

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKP 491
               G  PN  TY +M   +  +G +E+   L   ME+    C     +L+ + +  ++ 
Sbjct: 647 FSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDN--GCTVDSGMLNFIVRELLQR 704

Query: 492 DEIT 495
            EIT
Sbjct: 705 GEIT 708



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 116/401 (28%), Positives = 171/401 (42%), Gaps = 52/401 (12%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  PD VS   ++N F K      A+     +L +  SPDVVT   +I  LC      +A
Sbjct: 191 GSAPDVVSYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKA 250

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             + T  V    +  V+PN   Y SI+ G C  G   +       ++  G+ PD    + 
Sbjct: 251 MEVLTSMV----KNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPD- 305

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
            I  YC  +     KG       L +  V  NG      HPD   Y  +I +  K   VD
Sbjct: 306 -IATYCTLLQGYATKGALVGMHALLDLMVR-NG-----IHPDHYVYNILICAYAKQGKVD 358

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A  +F  M+ +G+ PD V Y ++I   C  GR++DA   F  +  EG  P    YN+LI
Sbjct: 359 EAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLI 418

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           +      K E A  L  EM+  G+     C+           NT F      FN ++D  
Sbjct: 419 HGLCTCNKWERAEELILEMLDRGI-----CL-----------NTIF------FNSIIDSH 456

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------- 469
           CK  R+  + +LF  + R G +P+++TY+ +I G C+ G +++A  LL  M         
Sbjct: 457 CKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNT 516

Query: 470 -----------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                      KI     A+ L  +M    V PD IT +I+
Sbjct: 517 VTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNII 557



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 119/480 (24%), Positives = 199/480 (41%), Gaps = 76/480 (15%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142
           P   +  +N +  A AGK                 + P   +  IL+ C C+   +   F
Sbjct: 65  PAAAVSRYNRMARAGAGK-----------------VTPTVHTYAILIGCCCRADRLDLGF 107

Query: 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL-FTKFVAFDCRPNVIPNVICYAS 201
            ALG +++K F  + +T   L++GLC   + ++A  +   +     C P+V    I    
Sbjct: 108 AALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTI---- 163

Query: 202 IIDGLCKDGFVNKVRVL---FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL 258
           ++ GLC +    +   L     D +G G  PD   Y ++I       N    +G++  A 
Sbjct: 164 LLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTTVI-------NGFFKEGDSGKAY 216

Query: 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS 318
             + E ++          PDV++Y SII +LCK   +DKA E+   M   G++P+   Y+
Sbjct: 217 STYHEMLDRR------ISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYT 270

Query: 319 SLIDGYCLMGRIDDARKLFVSIESEGC-----IPDTSSYNTLINSYSKIEKVEEALSLYG 373
           S++ GYC  G+  +A      + S+G       PD ++Y TL+  Y+    +    +L  
Sbjct: 271 SIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALLD 330

Query: 374 EMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
            M+  G+ PD+               + EA  +F  +       D   +  ++  LCKS 
Sbjct: 331 LMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSG 390

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAI-- 478
           R+  A   F+++   G  P  + Y  +I GLC     E+A +L+ +M ++   CL  I  
Sbjct: 391 RVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDR-GICLNTIFF 449

Query: 479 -----------------ELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
                            +L   M +  VKPD IT S L +         E M LL   +S
Sbjct: 450 NSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVS 509



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 154/332 (46%), Gaps = 25/332 (7%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           KSG VE  DA+ +F  MI    +P    +NSL+  L     +     L   +   G+  +
Sbjct: 388 KSGRVE--DAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLN 445

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            +  N +++  CK   V ++      ++R    PD++T   LI G C+ GK  EA  L +
Sbjct: 446 TIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLS 505

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
             V+   +PN +     Y ++I+G CK   +    VLF +M+  G+ PD   YN +++  
Sbjct: 506 GMVSVGLKPNTVT----YRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGL 561

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
                ++  +  T+AA EL+        ++      ++ +Y  I++ LCK+ L D A  +
Sbjct: 562 -----FQTRR--TAAAKELYVRITESGTQI------ELSTYNIILHGLCKNKLTDDALRM 608

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F ++    +  +   ++ +ID    +GR  +A+ LFV+  S G +P+  +Y  +  +   
Sbjct: 609 FQNLCLMDLKLEARTFNIMIDALLKVGRNGEAKDLFVAFSSNGLVPNYWTYRLMAENIIG 668

Query: 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAEL 393
              +EE   L+  M       DN C +++  L
Sbjct: 669 QGLLEELDQLFLSM------EDNGCTVDSGML 694


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 118/446 (26%), Positives = 199/446 (44%), Gaps = 59/446 (13%)

Query: 74  FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
            +  M++    P + +FN+L+  L+ K        +  ++    L PD  +   L+   C
Sbjct: 185 LYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHC 244

Query: 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
           +   +  AF    R++++   P+ VT   LI GLC +G+  EA  +  + +     P V 
Sbjct: 245 RNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVY 304

Query: 194 -------------------------------PNVICYASIIDGLCKDGFVNKVRVLFLDM 222
                                          PNV  Y ++I GL + G +     L+  M
Sbjct: 305 TYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKM 364

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
              G+ P+   YN+LI   C         G  S AL++   ++ G+G L      +  +Y
Sbjct: 365 LKEGLVPNTVTYNALINELCVG-------GRFSTALKIFH-WMEGHGSLA-----NTQTY 411

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
             II  LC    ++KA  LF  M   G +P VV Y++LI+GY   G +++A +L   ++ 
Sbjct: 412 NEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKE 471

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILE 389
            GC PD  +YN L++ +SK  K+E A   + EM+  G+ P+             +  +  
Sbjct: 472 NGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDI 531

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
           A  L + +       ++  +N +++GL K  R   A ++  K+   G  PNV+TYT +I 
Sbjct: 532 ALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLID 591

Query: 450 GLCIEGGIEKAYDLLPDMEEKIRECL 475
           GLC  G  + A+ +  DME+  R+CL
Sbjct: 592 GLCRNGRTQFAFKIFHDMEK--RKCL 615



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 119/418 (28%), Positives = 190/418 (45%), Gaps = 30/418 (7%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E E+     F N +  M     + S N+LL  LA  +       L +++   G+ P  ++
Sbjct: 141 EEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLT 200

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N L+N   K   V +A + L +I +   SPDV T   LI G C       A G+F + V
Sbjct: 201 FNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMV 260

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
              C     PN + Y+++I+GLC +G V++   +  +M  +GI P  + Y   I   C  
Sbjct: 261 KEGCD----PNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALC-- 314

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                         E   E V    + G  C P+V +Y ++I+ L +   ++ A  L+  
Sbjct: 315 ---------AIEHEEEAIELVARMKKRG--CRPNVQTYTALISGLSRLGKLEVAIGLYHK 363

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M   G++P+ V Y++LI+  C+ GR   A K+F  +E  G + +T +YN +I        
Sbjct: 364 MLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGD 423

Query: 365 VEEALSLYGEMISMGVRP-------------DNSCILEAAELFRTLHNTKFELDLTVFNC 411
           +E+A+ L+ +M+ MG  P                 +  AA L   +     E D   +N 
Sbjct: 424 IEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNE 483

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           LV G  K  +L SA   F+++   G  PN V+YT +I G   +G ++ A  LL  MEE
Sbjct: 484 LVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEE 541



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 120/472 (25%), Positives = 205/472 (43%), Gaps = 56/472 (11%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + ++ +L+  L+        I L  ++   GL+P+ V+ N L+N  C     S A   
Sbjct: 336 PNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKI 395

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
              +       +  T   +I+GLC+ G   +A  LF K +    +   +P V+ Y ++I+
Sbjct: 396 FHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKML----KMGPLPTVVTYNTLIN 451

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL---- 260
           G    G VN    L   MK  G  PD + YN L+  +      E A       +E     
Sbjct: 452 GYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNP 511

Query: 261 ----HEEFVNGNGELGVI--------------CHPDVLSYCSIINSLCKDVLVDKAKELF 302
               +   ++G+ + G +              C+P+V SY ++IN L K+    +A+++ 
Sbjct: 512 NPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKIC 571

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
             M  +G++P+V+ Y++LIDG C  GR   A K+F  +E   C+P+  +Y++LI    + 
Sbjct: 572 DKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQE 631

Query: 363 EKVEEA-----------LSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNC 411
            K +EA           L  Y  ++S   R       EA +L + +    F  D  ++  
Sbjct: 632 GKADEAERMSEIGCEPTLDTYSTLVSGLCRKGR--FYEAEQLVKDMKERGFCPDREIYYS 689

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI 471
           L+   CK+  +  A ++F  +   G + ++  Y  +IC LC  G +E+A  L  +M EK 
Sbjct: 690 LLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEK- 748

Query: 472 RECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
                               DEI  ++L + L K+     CM LL    S+N
Sbjct: 749 ----------------EWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKN 784



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 109/416 (26%), Positives = 176/416 (42%), Gaps = 72/416 (17%)

Query: 63  SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF 122
            G++E   A+  F  M+ M P P + ++N+L+     K    N   L + +   G  PD 
Sbjct: 421 GGDIE--KAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDE 478

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
            + N L++ F K   +  A      ++    +P+ V+   LI G    GK   A  L  +
Sbjct: 479 WTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKR 538

Query: 183 FVAFDCRPNV-------------------------------IPNVICYASIIDGLCKDGF 211
                C PNV                               +PNVI Y ++IDGLC++G 
Sbjct: 539 MEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGR 598

Query: 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGEL 271
                 +F DM+ R   P+ + Y+SLI   C     ++ K + +  +           E+
Sbjct: 599 TQFAFKIFHDMEKRKCLPNLYTYSSLIYGLC-----QEGKADEAERM----------SEI 643

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
           G  C P + +Y ++++ LC+     +A++L  DMK RG  PD  +Y SL+  +C    +D
Sbjct: 644 G--CEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVD 701

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAA 391
            A K+F SIE++G     S Y  LI +  K  +VEEA +L+  M+               
Sbjct: 702 HALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLE-------------- 747

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
                    ++  D  V+  LVDGL K   L    +L   +      PN+ TY ++
Sbjct: 748 --------KEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVIL 795



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 143/313 (45%), Gaps = 31/313 (9%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           +SK G+V++  AL     M  M   P + S+N+++  L+ +  +     + +++   GLL
Sbjct: 523 HSKDGKVDI--ALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLL 580

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ ++   L++  C+      AF     + ++   P++ T   LI GLC +GK  EA   
Sbjct: 581 PNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAE-- 638

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             +     C P +      Y++++ GLC+ G   +   L  DMK RG  PD  +Y SL+ 
Sbjct: 639 --RMSEIGCEPTLDT----YSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLI 692

Query: 240 VYCCAVNWEDA----KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
            +C  +  + A        +   +LH                    Y ++I +LCK   V
Sbjct: 693 AHCKNLEVDHALKIFHSIEAKGFQLHLSI-----------------YRALICALCKAGQV 735

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           ++A+ LF +M  +    D +V++ L+DG    G +D   KL   +ES+   P+  +Y  L
Sbjct: 736 EEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVIL 795

Query: 356 INSYSKIEKVEEA 368
               S+I K  E+
Sbjct: 796 GRELSRIGKSIES 808


>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
 gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 126/480 (26%), Positives = 218/480 (45%), Gaps = 78/480 (16%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+GEV++  A+     M   +  P + +FNSLL  L   +      C+   +   G +PD
Sbjct: 148 KAGEVDV--AIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPD 205

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGR-ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
             + +I+ +   K    + A + L R  + K    D  T   L+ GLC +GK  +A  + 
Sbjct: 206 GFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGKVEKAEEVL 265

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
              V       ++P  + Y +I++G C+ G +++  +    M+ RG+ P+   +NS+I  
Sbjct: 266 KSLVEH----GLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVIDK 321

Query: 241 YC------CAVNWED---AKGNTSAALELHEEFVNGNGELGVICH--------------P 277
           +C       A  W      KG  + ++E +   ++G G L V                 P
Sbjct: 322 FCEMQMIDKAEEWVKKMVGKG-IAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKP 380

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD------------------------ 313
           +V+SY S+IN LCKD  + +A+ +  DM  RG++P+                        
Sbjct: 381 NVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFF 440

Query: 314 -----------VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
                      +V Y+SLI G C MG++ +A ++F  I S G  PD  +YN+LI+ YS  
Sbjct: 441 DEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNA 500

Query: 363 EKVEEALSLYGEMISMGVRPD--------NSCILEAAELFRTLHNTKFELDLT----VFN 410
              ++ L LY  M  +G++P         + C  E  +L  TL N   +++L+    V+N
Sbjct: 501 GNSQKCLELYETMKKLGLKPTINTFHPLISGCSKEGIKLKETLFNEMLQMNLSPDRVVYN 560

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            ++    ++  ++ A+ L K++   G  P+  TY  +I G   EG + +  DL+ DM+ K
Sbjct: 561 AMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAK 620



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 116/454 (25%), Positives = 198/454 (43%), Gaps = 62/454 (13%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G+++L  A+  F  M   +  P +  +N L+G L  +K   +   L   ++   L+P+
Sbjct: 78  KLGDLKL--AMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPN 135

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL-- 179
            V+ N L++ +CK   V  A     R+ ++   P ++T   L+ GLC   +  EA  +  
Sbjct: 136 RVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLN 195

Query: 180 -----------FTKFVAFD--------------------CRPNVIPNVICYASIIDGLCK 208
                      FT  + FD                     +   I N  C + +++GLCK
Sbjct: 196 EIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTC-SILLNGLCK 254

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           +G V K   +   +   G+ P   +YN+++  YC   + +       A L + +    G 
Sbjct: 255 EGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMD------RAILTIEQMESRG- 307

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                   P+ +++ S+I+  C+  ++DKA+E    M  +GI P V  Y+ LIDGY  + 
Sbjct: 308 ------LRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLC 361

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP------ 382
                 ++   +E  G  P+  SY +LIN   K  K+ EA  +  +M+  GV P      
Sbjct: 362 VFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYN 421

Query: 383 ---DNSCIL----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
              D SC +    EA   F  +        +  +N L+ GLCK  +L+ A E+F  +   
Sbjct: 422 MLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITST 481

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           G  P+V+TY  +I G    G  +K  +L   M++
Sbjct: 482 GHCPDVITYNSLISGYSNAGNSQKCLELYETMKK 515



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 116/424 (27%), Positives = 186/424 (43%), Gaps = 66/424 (15%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           E++ + GL P+ ++ N +++ FC+M  +  A   + +++ K  +P V T   LI G    
Sbjct: 301 EQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGY--- 357

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G+    S  F      +      PNVI Y S+I+ LCKDG + +  ++  DM GRG+ P+
Sbjct: 358 GRLCVFSRCFQILEEME-ENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPN 416

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV-NGNGELGVICHPDVLSYCSIINSL 289
           A +YN LI   C         G    AL   +E   NG G         +++Y S+I  L
Sbjct: 417 ANIYNMLIDGSCTV-------GKLREALRFFDEMSKNGIG-------ATIVTYNSLIKGL 462

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES------- 342
           CK   + +A+E+F  + S G  PDV+ Y+SLI GY   G      +L+ +++        
Sbjct: 463 CKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTI 522

Query: 343 -------EGCI--------------------PDTSSYNTLINSYSKIEKVEEALSLYGEM 375
                   GC                     PD   YN +I+ Y +   V++A SL  EM
Sbjct: 523 NTFHPLISGCSKEGIKLKETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEM 582

Query: 376 ISMGVRPDN----SCIL---------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRL 422
           + MGVRPDN    S IL         E  +L   +       +   ++ L+ G C     
Sbjct: 583 VDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDF 642

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLH 482
             A+  ++++   G  PNV     +  GL  +G +++A  +  +M     + L   E L 
Sbjct: 643 NGAYVWYREMLENGFLPNVCICNELSTGLRKDGRLQEAQSICSEMIANGMDNLDTNEDLS 702

Query: 483 KMAK 486
            +AK
Sbjct: 703 DVAK 706



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/464 (22%), Positives = 194/464 (41%), Gaps = 90/464 (19%)

Query: 81  MQPTPFMPSFN---SLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           M+    +PSF     ++ +L   K + N + L + +  +G  PD +     M    K+  
Sbjct: 22  MRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGLGFRPDKLVYGRAMLAAVKLGD 81

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           +  A      + R+   P+V     LI GLC + +  +A  LF +        N++PN +
Sbjct: 82  LKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSV----RNLVPNRV 137

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK------ 251
            + ++IDG CK G V+    L   MK   + P    +NSL+   C A   E+A+      
Sbjct: 138 TFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEI 197

Query: 252 -----------------------GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
                                      AAL+L+ E + G G        D  +   ++N 
Sbjct: 198 KCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAI-GKG-----VKIDNYTCSILLNG 251

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           LCK+  V+KA+E+   +   G++P  V+Y+++++GYC +G +D A      +ES G  P+
Sbjct: 252 LCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPN 311

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------------------- 383
             ++N++I+ + +++ +++A     +M+  G+ P                          
Sbjct: 312 CIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILE 371

Query: 384 -----------------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
                                  +  ILEA  + R +       +  ++N L+DG C   
Sbjct: 372 EMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVG 431

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           +LR A   F ++ + G    +VTY  +I GLC  G +++A ++ 
Sbjct: 432 KLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMF 475



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 168/406 (41%), Gaps = 78/406 (19%)

Query: 117 GLLPDFVSLNILMNCFC---KMIGVSDAF---VALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           G LP F  + +++       K   V D F   V LG      F PD +  G  +      
Sbjct: 26  GRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGLG------FRPDKLVYGRAMLAAVKL 79

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G    A  LF        R  V+PNV  Y  +I GLCK+  +     LF +M  R + P+
Sbjct: 80  GDLKLAMELFETMK----RRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPN 135

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
              +N+LI  YC A       G    A+ L E       E      P ++++ S+++ LC
Sbjct: 136 RVTFNTLIDGYCKA-------GEVDVAIGLRERMKKEKVE------PSIITFNSLLSGLC 182

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLID---------------------------- 322
           K   +++A+ +  ++K  G +PD   YS + D                            
Sbjct: 183 KARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDN 242

Query: 323 --------GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
                   G C  G+++ A ++  S+   G +P    YNT++N Y +I  ++ A+    +
Sbjct: 243 YTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQ 302

Query: 375 MISMGVRP---------DNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
           M S G+RP         D  C    I +A E  + +        +  +N L+DG  +   
Sbjct: 303 MESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCV 362

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
               +++ +++   G +PNV++Y  +I  LC +G I +A  +L DM
Sbjct: 363 FSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDM 408



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 147/330 (44%), Gaps = 45/330 (13%)

Query: 202 IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261
           I++ L +    + V  LF +M G G  PD  VY    R    AV   D K     A+EL 
Sbjct: 37  IVESLVESKKFDNVLDLFKEMVGLGFRPDKLVYG---RAMLAAVKLGDLK----LAMELF 89

Query: 262 EEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
           E              P+V  Y  +I  LCK+  +  A++LF +M  R ++P+ V +++LI
Sbjct: 90  ETMKRRK------VVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLI 143

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
           DGYC  G +D A  L   ++ E   P   ++N+L++   K  ++EEA  +  E+   G  
Sbjct: 144 DGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFV 203

Query: 382 PDN---SCILE-----------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           PD    S I +           A +L+R       ++D    + L++GLCK  ++  A E
Sbjct: 204 PDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGKVEKAEE 263

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK----------------- 470
           + K L  +G  P  V Y  ++ G C  G +++A   +  ME +                 
Sbjct: 264 VLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVIDKFC 323

Query: 471 -IRECLKAIELLHKMAKRYVKPDEITVSIL 499
            ++   KA E + KM  + + P   T +IL
Sbjct: 324 EMQMIDKAEEWVKKMVGKGIAPSVETYNIL 353



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 144/338 (42%), Gaps = 40/338 (11%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           M+     P + ++N L+        +     + E +   G  P+ +S   L+NC CK   
Sbjct: 338 MVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGK 397

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           + +A + L  ++ +   P+      LI G C  GK  EA   F +      +  +   ++
Sbjct: 398 ILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEM----SKNGIGATIV 453

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            Y S+I GLCK G + +   +F  +   G  PD   YNSLI  Y  A       GN+   
Sbjct: 454 TYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNA-------GNSQKC 506

Query: 258 LELHEE---------------FVNG-------------NGELGVICHPDVLSYCSIINSL 289
           LEL+E                 ++G             N  L +   PD + Y ++I+  
Sbjct: 507 LELYETMKKLGLKPTINTFHPLISGCSKEGIKLKETLFNEMLQMNLSPDRVVYNAMIHCY 566

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
            +   V KA  L  +M   G+ PD   Y+SLI G+   G++ + + L   ++++G IP+ 
Sbjct: 567 QETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPEA 626

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
            +Y+ LI  +  ++    A   Y EM+  G  P N CI
Sbjct: 627 DTYSLLIQGHCDLKDFNGAYVWYREMLENGFLP-NVCI 663


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 114/435 (26%), Positives = 200/435 (45%), Gaps = 70/435 (16%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIGLLPDFVS 124
           EL  AL   + M      P   ++NS++  L   GK +    + L E ++   ++PD V 
Sbjct: 308 ELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKV-LREMMSQ-KIIPDNVV 365

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
              L++ F K+  V  A      +L K  SPD +T   LI+G    GK  E   LF + +
Sbjct: 366 YTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMI 425

Query: 185 AFDCRPNVI-------------------------------PNVICYASIIDGLCKDGFVN 213
           +   +P+ +                               PN++ Y ++IDGLCK G ++
Sbjct: 426 SRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELD 485

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
               L  +M+ +G+  +  +YNS++   C A       GN   A++L +E      E+  
Sbjct: 486 TANELLDEMRKKGLQLNVCIYNSMVNGICKA-------GNIEQAIKLMKEM-----EVAG 533

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
           I  PD ++Y ++I++ C+   +DKA +L  +M  RG+ P VV ++ L++G+C++G ++D 
Sbjct: 534 I-DPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDG 592

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAEL 393
            +L   +  +G +PD  +YNTL+  +     +     +Y  M + GV PD++        
Sbjct: 593 DRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSN-------- 644

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
                          +N L+ G CK+  L+ AW L+K++   G  P V +Y  +I     
Sbjct: 645 --------------TYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYK 690

Query: 454 EGGIEKAYDLLPDME 468
           +  I +A +L  +M 
Sbjct: 691 KKKILEARELFEEMR 705



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 110/424 (25%), Positives = 203/424 (47%), Gaps = 32/424 (7%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           TP + S+++++            + L + +   GL P+  + N ++   CK+    +A  
Sbjct: 290 TPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEK 349

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
            L  ++ +   PD V    LI G    G    A+  F + ++      + P+ I Y ++I
Sbjct: 350 VLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLS----KKISPDYITYTTLI 405

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
            G  + G V + + LF +M  RG+ PD   Y +LI VYC A       G    A  LH E
Sbjct: 406 QGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKA-------GEMVNAFSLHNE 458

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
            V    ++G+   P++++Y ++I+ LCK   +D A EL  +M+ +G+  +V +Y+S+++G
Sbjct: 459 MV----QMGMT--PNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNG 512

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP- 382
            C  G I+ A KL   +E  G  PD  +Y T+I++Y ++  +++A  L  EM+  G++P 
Sbjct: 513 ICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPT 572

Query: 383 --------DNSCILEAAE----LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
                   +  C+L   E    L   +       D   +N L+   C    + +  +++K
Sbjct: 573 VVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYK 632

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVK 490
           ++   G  P+  TY ++I G C    +++A+ L  +M EK    +  +   + + KR+ K
Sbjct: 633 RMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEK--GYVPTVTSYNALIKRFYK 690

Query: 491 PDEI 494
             +I
Sbjct: 691 KKKI 694



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 169/354 (47%), Gaps = 30/354 (8%)

Query: 74  FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
           +F+ M+  + +P   ++ +L+         +    L   + + GL PD V+   L++ +C
Sbjct: 385 WFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYC 444

Query: 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
           K   + +AF     +++   +P++VT G LI GLC  G+   A+ L  +      +  + 
Sbjct: 445 KAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMR----KKGLQ 500

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
            NV  Y S+++G+CK G + +   L  +M+  GI PDA  Y ++I  YC         G+
Sbjct: 501 LNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYC-------RLGD 553

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
              A +L +E ++          P V+++  ++N  C   +++    L   M  +GI+PD
Sbjct: 554 IDKAHKLLQEMLDRG------LQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPD 607

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
            + Y++L+  +C+   ++   K++  + ++G  PD+++YN LI  + K   ++EA  LY 
Sbjct: 608 AITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYK 667

Query: 374 EMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDLTVFNCLVD 414
           EMI  G  P  +              ILEA ELF  +       D  ++N  VD
Sbjct: 668 EMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVADGEIYNFFVD 721



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/344 (30%), Positives = 166/344 (48%), Gaps = 46/344 (13%)

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C   +  N   Y  II  LC+ G V +   L + M  R   PD   Y+++I  YC     
Sbjct: 250 CEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHL--- 306

Query: 248 EDAKGNTSAALELHEEF-VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
               G    AL+L ++  + G         P+  +Y SII  LCK     +A+++  +M 
Sbjct: 307 ----GELKKALKLMDDMQIKG-------LKPNRYTYNSIILLLCKIGKSFEAEKVLREMM 355

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           S+ IIPD VVY++LI G+  +G +  A K F  + S+   PD  +Y TLI  + +  KV 
Sbjct: 356 SQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVI 415

Query: 367 EALSLYGEMISMGVRPDN-------SCILEAAELFR--TLHNTKFELDLT----VFNCLV 413
           E  +L+ EMIS G++PD            +A E+    +LHN   ++ +T     +  L+
Sbjct: 416 EPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALI 475

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE---- 469
           DGLCK   L +A EL  ++ + G + NV  Y  M+ G+C  G IE+A  L+ +ME     
Sbjct: 476 DGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGID 535

Query: 470 --------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                         ++ +  KA +LL +M  R ++P  +T ++L
Sbjct: 536 PDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVL 579


>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 739

 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 115/372 (30%), Positives = 175/372 (47%), Gaps = 64/372 (17%)

Query: 159 TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVL 218
           T   L+ GLC  G   EA  +F    A  C P+  P+V  YA+++ GLC  G   +   L
Sbjct: 144 TYTALLHGLCGAGMVREAMSVFAGMQADGCAPD--PHV--YATMVHGLCGAGRTREAETL 199

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF-VNGNGELGVICHP 277
             D    G  P+  VYN+LI  YC         G+   A+++ E   VNG       C P
Sbjct: 200 LSDAMAEGFEPNVVVYNALIDGYCNV-------GDLELAVDVFERMDVNG-------CSP 245

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           +V +Y  +I+  CK   +D+A  LF  M   G++P+VV Y++LI G C  G++D A +L 
Sbjct: 246 NVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLL 305

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397
            S+E+ G +P+  + + LI++  K E+V EA  L G +I  G++ +              
Sbjct: 306 QSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNE------------- 352

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                     V+  L+DGLCK+ R  +A  L + L   G  P+  TY+ +I GLC +  +
Sbjct: 353 ---------IVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKEL 403

Query: 458 EKAYDLLPDMEEK------------IRECLKAI------ELLHKMAKRYVKPDEITVSIL 499
            +A  +L DM EK            I E ++ +      ++L KM    +KPD  T +I 
Sbjct: 404 SEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIF 463

Query: 500 EELLNKDENCHE 511
                    CHE
Sbjct: 464 VR-----SYCHE 470



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 105/433 (24%), Positives = 186/433 (42%), Gaps = 47/433 (10%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++ +LL  L G       + +   +   G  PD      +++  C      +A   L   
Sbjct: 144 TYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDA 203

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
           + + F P+VV    LI G C  G    A  +F +     C PNV      Y  +I G CK
Sbjct: 204 MAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRT----YTELISGFCK 259

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
              +++  +LF  M   G+ P+   Y +LI+  C       + G    A  L +   N  
Sbjct: 260 SRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQC-------SDGQLDCAYRLLQSMENS- 311

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
              G++  P+  +   +I++LCK   V +A+ L   +  +GI  + +VY+SLIDG C  G
Sbjct: 312 ---GLV--PNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAG 366

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NS 385
           R   A +L  ++ S+G +PD  +Y++LI+   + +++ EA+ +  +M+  GV+P     +
Sbjct: 367 RFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYT 426

Query: 386 CILE----------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
            I++          + ++   +     + D+  +   V   C   R+  A  +   +  +
Sbjct: 427 IIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDH 486

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEIT 495
           G  PN+VTY  +ICG    G   +A+                      M     KP+E +
Sbjct: 487 GVCPNLVTYNALICGYANLGLTSQAF-----------------STFKHMVANGCKPNEES 529

Query: 496 VSILEELLNKDEN 508
            ++L  LL K E+
Sbjct: 530 YTVLLRLLIKKES 542



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/418 (25%), Positives = 173/418 (41%), Gaps = 48/418 (11%)

Query: 64  GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV 123
           G++EL  A+  F  M     +P + ++  L+      +     + L  R+   GL+P+ V
Sbjct: 226 GDLEL--AVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVV 283

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           +   L+   C    +  A+  L  +      P+  T   LI  LC   +  EA  L    
Sbjct: 284 TYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSL 343

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
           +    +  +  N I Y S+IDGLCK G       L   +  +G  PDA  Y+SLI   C 
Sbjct: 344 I----QKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLC- 398

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                  K  + A L L +    G         P  ++Y  II+ L ++V  D +K++  
Sbjct: 399 -----RQKELSEAMLVLDDMMEKG-------VQPSPVTYTIIIDELVREVGADGSKKILD 446

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            M + GI PDV  Y+  +  YC  GR++DA  + + +   G  P+  +YN LI  Y+ + 
Sbjct: 447 KMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLG 506

Query: 364 KVEEALSLYGEMISMGVRPD----------------------NSCILEAAELFRTLHN-- 399
              +A S +  M++ G +P+                      NS  +      + LH   
Sbjct: 507 LTSQAFSTFKHMVANGCKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIAEMKYLHGLL 566

Query: 400 ---TKFEL--DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
               K +L  ++ ++NC +  LC+  RL  A  L  ++      P+   YT +I   C
Sbjct: 567 EEMVKLQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCC 624



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 136/304 (44%), Gaps = 43/304 (14%)

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            Y +LI  YC A +   +K + S+ L     F            PD  +Y S +   C+ 
Sbjct: 74  TYTTLINAYCLAGDLPASKRHLSSLLR--AGFA-----------PDSHAYTSFVVGYCRA 120

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
            L+  A  LF+ M  RG +     Y++L+ G C  G + +A  +F  ++++GC PD   Y
Sbjct: 121 GLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVY 180

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCI--------LE-AAELFRTLHN 399
            T+++      +  EA +L  + ++ G  P+    N+ I        LE A ++F  +  
Sbjct: 181 ATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDV 240

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
                ++  +  L+ G CKS +L  A  LF ++   G  PNVVTYT +I G C +G ++ 
Sbjct: 241 NGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDC 300

Query: 460 AYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519
           AY LL  ME                    + P+E T S+L + L K E   E   LL S 
Sbjct: 301 AYRLLQSMENS-----------------GLVPNEWTCSVLIDALCKHERVGEAQLLLGSL 343

Query: 520 LSRN 523
           + + 
Sbjct: 344 IQKG 347



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 98/477 (20%), Positives = 184/477 (38%), Gaps = 99/477 (20%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L+ A+  F+ M+     P + ++ +L+              L + +   GL+P+  + +
Sbjct: 262 KLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCS 321

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +L++  CK   V +A + LG +++K    + +    LI GLC  G+F  A  L    V+ 
Sbjct: 322 VLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVS- 380

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM--KG-------------------- 224
                 +P+   Y+S+IDGLC+   +++  ++  DM  KG                    
Sbjct: 381 ---QGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVG 437

Query: 225 -------------RGIYPDAFVYNSLIRVYCCAVNWEDAKG--------NTSAALELHEE 263
                         GI PD F Y   +R YC     EDA+              L  +  
Sbjct: 438 ADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNA 497

Query: 264 FVNGNGELGVI--------------CHPDVLSYCSIINSLCK----------DVLVDKAK 299
            + G   LG+               C P+  SY  ++  L K           V + K  
Sbjct: 498 LICGYANLGLTSQAFSTFKHMVANGCKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIA 557

Query: 300 E------LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353
           E      L  +M    +  ++ +Y+  +   C + R+D+A+ L + ++S    P    Y 
Sbjct: 558 EMKYLHGLLEEMVKLQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYT 617

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLV 413
           ++I    +++ + EAL+    M+  G  P                       L  +  ++
Sbjct: 618 SIIACCCRLKMLTEALTFVDSMVKSGYIP----------------------QLESYRHII 655

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
             LC+   +++A ++F  +         + + ++I GL  +G + +   LL  MEEK
Sbjct: 656 SSLCEEGSIQTAKQVFGDMLSKEYNYEEIAWRILIDGLLQKGYVAECSSLLSVMEEK 712



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 144/319 (45%), Gaps = 9/319 (2%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G     D L     ++     P   +++SL+  L  +K     + + + +   G+ P 
Sbjct: 364 KAGRFAAADRL--MQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPS 421

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+  I+++   + +G   +   L +++     PDV T    +R  C +G+  +A  +  
Sbjct: 422 PVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMML 481

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
             V       V PN++ Y ++I G    G  ++    F  M   G  P+   Y  L+R+ 
Sbjct: 482 HMVDH----GVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKPNEESYTVLLRLL 537

Query: 242 CCAVNWEDAKGNTSAALELHE-EFVNGNGELGVICH--PDVLSYCSIINSLCKDVLVDKA 298
               +  +   N+ +  ++ E ++++G  E  V      ++  Y   + SLC+   +D+A
Sbjct: 538 IKKESSNNIPANSVSIWKIAEMKYLHGLLEEMVKLQLPSEIDIYNCFLTSLCRVDRLDEA 597

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
           K L ++M+S  + P   VY+S+I   C +  + +A     S+   G IP   SY  +I+S
Sbjct: 598 KILLIEMQSANLTPSEDVYTSIIACCCRLKMLTEALTFVDSMVKSGYIPQLESYRHIISS 657

Query: 359 YSKIEKVEEALSLYGEMIS 377
             +   ++ A  ++G+M+S
Sbjct: 658 LCEEGSIQTAKQVFGDMLS 676



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/355 (21%), Positives = 140/355 (39%), Gaps = 74/355 (20%)

Query: 67  ELNDALCFFNYMIH--MQPTP-----FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           EL++A+   + M+   +QP+P      +      +GA   KK       + +++   G+ 
Sbjct: 402 ELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKK-------ILDKMIAAGIK 454

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD  +  I +  +C    + DA   +  ++     P++VT   LI G    G  ++A   
Sbjct: 455 PDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFST 514

Query: 180 FTKFVAFDCRPN----------------------------------------------VI 193
           F   VA  C+PN                                               +
Sbjct: 515 FKHMVANGCKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIAEMKYLHGLLEEMVKLQL 574

Query: 194 PNVI-CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252
           P+ I  Y   +  LC+   +++ ++L ++M+   + P   VY S+I   CC +       
Sbjct: 575 PSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIAC-CCRLKM----- 628

Query: 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
             + AL     FV+   + G I  P + SY  II+SLC++  +  AK++F DM S+    
Sbjct: 629 -LTEALT----FVDSMVKSGYI--PQLESYRHIISSLCEEGSIQTAKQVFGDMLSKEYNY 681

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           + + +  LIDG    G + +   L   +E +   P  + Y  L    +    ++E
Sbjct: 682 EEIAWRILIDGLLQKGYVAECSSLLSVMEEKNYRPSDALYARLTGKITDANDIQE 736


>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Brachypodium distachyon]
          Length = 938

 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 118/414 (28%), Positives = 198/414 (47%), Gaps = 48/414 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ P+ V+  + +  +C+   V DAF     ++RK   PDVVTL  L+ GLC  G+F+EA
Sbjct: 239 GVEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEA 298

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             LF +      +    PN + Y  +ID L K    N+   L  ++  RG+  D  +Y +
Sbjct: 299 YALFREME----KIGAAPNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTA 354

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           L+       +W   +G    A ++    ++ N        P+ ++Y  +I++LCK   VD
Sbjct: 355 LM-------DWLCKEGKIDEAKDMFRHALSDNHT------PNGVTYTVLIDALCKAGNVD 401

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A+++  +M+ + I P+VV +SS+I+G    G +  A      ++  G  P+  +Y T+I
Sbjct: 402 GAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVI 461

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFE 403
           +   K    E AL +Y EM+  GV  +             N  I +A  LFR ++     
Sbjct: 462 DGSFKCLGQEAALDVYHEMLCEGVEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVL 521

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
           LD   +  L+DGL K+  L +A+++ ++L      P+ V Y V I  LC+ G  ++A   
Sbjct: 522 LDHVNYTTLIDGLFKTGNLPAAFKVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESF 581

Query: 464 LPDMEE----------------KIRE--CLKAIELLHKMAKRYVKPDEITVSIL 499
           L +M+                 + RE    KA++LL+ M +  +KP+ IT S L
Sbjct: 582 LEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTL 635



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 113/393 (28%), Positives = 186/393 (47%), Gaps = 56/393 (14%)

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           D VS N++M+ F +  G++   + L  + ++    D VT+  ++ GLC  G+   A+ L 
Sbjct: 102 DTVSYNVVMSGFSEQGGLAPEAL-LAEMCKRGVPFDAVTVNTVLVGLCRDGRVDRAAALA 160

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
              V       +  +V+ + S++DG CK G +     +   MK +G+  D   YNSL+  
Sbjct: 161 EVMVRGGGIGGL--DVVGWNSLVDGYCKVGDMETAFAVAERMKAQGVGVDVVGYNSLVAG 218

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
            C A       G   AA ++ +       E      P+V++Y   I   C+   VD A  
Sbjct: 219 LCRA-------GEVDAARDMVDTMKRDGVE------PNVVTYTMFIVEYCRRNAVDDAFS 265

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           L+ +M  +G++PDVV  S+L+ G C  GR  +A  LF  +E  G  P+  +Y  LI++ +
Sbjct: 266 LYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCMLIDTLA 325

Query: 361 KIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           K ++  E+LSL GE++S GV                       +DL ++  L+D LCK  
Sbjct: 326 KAQRGNESLSLLGEVVSRGV----------------------VMDLIMYTALMDWLCKEG 363

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK---------- 470
           ++  A ++F+        PN VTYTV+I  LC  G ++ A  +L +MEEK          
Sbjct: 364 KIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFS 423

Query: 471 -IRECL-------KAIELLHKMAKRYVKPDEIT 495
            I   L       KA + + +M +R + P+ +T
Sbjct: 424 SIINGLVKRGWVGKATDYMREMKERGIDPNVVT 456



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 109/431 (25%), Positives = 191/431 (44%), Gaps = 66/431 (15%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++DA   +  M+     P + + ++L+G L     +     L   +  IG  P+ V+  +
Sbjct: 260 VDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCM 319

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++   K    +++   LG ++ +    D++    L+  LC +GK  EA  +F   ++ +
Sbjct: 320 LIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSDN 379

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
             PN +                               PNV+ ++SII+GL K G+V K  
Sbjct: 380 HTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKAT 439

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
               +MK RGI P+   Y ++I      +  E       AAL+++ E +      GV  +
Sbjct: 440 DYMREMKERGIDPNVVTYGTVIDGSFKCLGQE-------AALDVYHEMLCE----GVEVN 488

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
             ++   S++N L K+  ++KA+ LF +M  RG++ D V Y++LIDG    G +  A K+
Sbjct: 489 KFIVD--SLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKV 546

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
              +  +  +PD   YN  IN    + K +EA S   EM S G++PD             
Sbjct: 547 GQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQ------------ 594

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
                       +N ++    +  +   A +L   + R   +PN++TY+ +I GL   G 
Sbjct: 595 ----------VTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGA 644

Query: 457 IEKAYDLLPDM 467
           +EKA  LL +M
Sbjct: 645 VEKAKYLLNEM 655



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 166/376 (44%), Gaps = 32/376 (8%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           + + L    LLPD V  N+ +NC C +    +A   L  +      PD VT   +I    
Sbjct: 546 VGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQS 605

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
            +GK  +A  L         R ++ PN+I Y+++I GL + G V K + L  +M   G  
Sbjct: 606 REGKTAKALKLLNGMK----RSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFS 661

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           P +  +  +++  C      D        LE+HE  +N       +C  D+  Y +++  
Sbjct: 662 PTSLTHRRVLQA-CSQGRRSDL------ILEIHEWMMNAG-----LC-ADITVYNTLVRV 708

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           LC + +  KA  +  +M  RGI PD + +++LI G+   G +D+A   +  +   G  P+
Sbjct: 709 LCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPN 768

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN-------------SCILEAAELFR 395
            +++NTL+       ++ E+  +  EM   G+ P N             S  +EA  L+ 
Sbjct: 769 VATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYC 828

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC-IE 454
            +    F   ++ +N L+    K   +  A ELF ++   G  P   TY +++ G   + 
Sbjct: 829 EMVGKGFLPKVSTYNALISDFSKVGMMSQAKELFNEMQNRGVLPTSCTYDILVSGWSKLR 888

Query: 455 GGIEKAYDLLPDMEEK 470
            G E     L DM+EK
Sbjct: 889 NGTE-VRKFLKDMKEK 903



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 114/253 (45%), Gaps = 17/253 (6%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           + E +   GL  D    N L+   C       A V L  +  +  +PD +T   LI G  
Sbjct: 686 IHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGHF 745

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
             G    A   + + +       + PNV  + +++ GL   G + +  ++  +MK RGI 
Sbjct: 746 KSGHLDNAFSTYDQMLYH----GISPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGIE 801

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           P    Y+ L+  Y         + N   A+ L+ E V G G L     P V +Y ++I+ 
Sbjct: 802 PSNLTYDILVTGY-------GKQSNKVEAVRLYCEMV-GKGFL-----PKVSTYNALISD 848

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
             K  ++ +AKELF +M++RG++P    Y  L+ G+  +    + RK    ++ +G  P 
Sbjct: 849 FSKVGMMSQAKELFNEMQNRGVLPTSCTYDILVSGWSKLRNGTEVRKFLKDMKEKGFSPS 908

Query: 349 TSSYNTLINSYSK 361
             + +++  ++SK
Sbjct: 909 KGTLSSISRAFSK 921



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/337 (20%), Positives = 131/337 (38%), Gaps = 53/337 (15%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           E + + GL PD V+ N ++    +    + A   L  + R    P+++T   LI GL   
Sbjct: 583 EEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEA 642

Query: 171 GKFTEASGLFTKFVAFDCRPNVI-------------------------------PNVICY 199
           G   +A  L  +  +    P  +                                ++  Y
Sbjct: 643 GAVEKAKYLLNEMSSSGFSPTSLTHRRVLQACSQGRRSDLILEIHEWMMNAGLCADITVY 702

Query: 200 ASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA--------K 251
            +++  LC +G   K  V+  +M GRGI PD   +N+LI  +  + + ++A         
Sbjct: 703 NTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLY 762

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDV--------------LSYCSIINSLCKDVLVDK 297
              S  +      + G    G I   D+              L+Y  ++    K     +
Sbjct: 763 HGISPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYDILVTGYGKQSNKVE 822

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A  L+ +M  +G +P V  Y++LI  +  +G +  A++LF  +++ G +P + +Y+ L++
Sbjct: 823 AVRLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQAKELFNEMQNRGVLPTSCTYDILVS 882

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
            +SK+    E      +M   G  P    +   +  F
Sbjct: 883 GWSKLRNGTEVRKFLKDMKEKGFSPSKGTLSSISRAF 919



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 105/250 (42%), Gaps = 21/250 (8%)

Query: 90  FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149
           +N+L+  L         + + E ++  G+ PD ++ N L+    K   + +AF    ++L
Sbjct: 702 YNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQML 761

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD 209
               SP+V T   L+ GL   G+  E+  +  +      +  + P+ + Y  ++ G  K 
Sbjct: 762 YHGISPNVATFNTLLGGLESAGRIGESDMVLNEMK----KRGIEPSNLTYDILVTGYGKQ 817

Query: 210 GFVNKVRV--LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
              NKV    L+ +M G+G  P    YN+LI  +          G  S A EL  E  N 
Sbjct: 818 S--NKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKV-------GMMSQAKELFNEMQN- 867

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
            G L   C  D+L     ++   K     + ++   DMK +G  P     SS+   +   
Sbjct: 868 RGVLPTSCTYDIL-----VSGWSKLRNGTEVRKFLKDMKEKGFSPSKGTLSSISRAFSKP 922

Query: 328 GRIDDARKLF 337
           G   +AR+L 
Sbjct: 923 GMSWEARRLL 932


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 127/491 (25%), Positives = 214/491 (43%), Gaps = 101/491 (20%)

Query: 52  KLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSE 111
           +LLK + E   +   EL D L      + ++ +     F+ L G L   + ++ F     
Sbjct: 147 QLLKQVMETRIATNRELFDELTLSRDRLSVKSSIV---FDLLEGKLKKAREFIGF----- 198

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
            +  +G  P+ VS N +++ +     +  A   L  +  K   PD  T G LI G+C +G
Sbjct: 199 -MEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEG 257

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK----------------- 214
           +  EASGLF K V       ++PN + Y ++IDG C  G + +                 
Sbjct: 258 RLEEASGLFDKMVEI----GLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSV 313

Query: 215 ------VRVLFL------------DMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSA 256
                 V  LF+            +M+ +GI PDA  YN LI  Y          GN   
Sbjct: 314 STYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRC-------GNAKR 366

Query: 257 ALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV 316
           A +LH E ++   E      P  ++Y S+I  L +   + +A +LF  +  +G+ PDV++
Sbjct: 367 AFDLHNEMLSKGIE------PTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIM 420

Query: 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
           ++++IDG+C  G ++ A  L   ++ +   PD  ++NTL+    +  KVEEA  L  EM 
Sbjct: 421 FNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMK 480

Query: 377 SMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
             G++PD+                        +N L+ G  +   ++ A+ +  ++   G
Sbjct: 481 XRGIKPDH----------------------ISYNTLISGYGRRGDIKDAFXVRDEMLSIG 518

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEIT- 495
             P ++TY  +I  LC                 K +E   A ELL +M  + + PD+ T 
Sbjct: 519 FNPTLLTYNALIKCLC-----------------KNQEGDLAEELLKEMVNKGISPDDSTY 561

Query: 496 VSILEELLNKD 506
           +S++E + N D
Sbjct: 562 LSLIEGMGNVD 572



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 138/301 (45%), Gaps = 17/301 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L  A  + + M+     P + ++N L+ AL  +        + + +   G++PD ++ N
Sbjct: 293 DLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYN 352

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           IL+N + +      AF     +L K   P  VT   LI  L  + +  EA  LF K +  
Sbjct: 353 ILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILD- 411

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                V P+VI + ++IDG C +G V +  +L  +M  + + PD   +N+L++  C    
Sbjct: 412 ---QGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGK 468

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            E+A+      + L E    G         PD +SY ++I+   +   +  A  +  +M 
Sbjct: 469 VEEAR------MLLDEMKXRG-------IKPDHISYNTLISGYGRRGDIKDAFXVRDEML 515

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           S G  P ++ Y++LI   C     D A +L   + ++G  PD S+Y +LI     ++ + 
Sbjct: 516 SIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNVDTLV 575

Query: 367 E 367
           E
Sbjct: 576 E 576


>gi|357140697|ref|XP_003571900.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Brachypodium distachyon]
          Length = 571

 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 113/417 (27%), Positives = 201/417 (48%), Gaps = 53/417 (12%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P   S+N L++       V  A  A    LR+  SPD+ T   +I GLC  G+  +A   
Sbjct: 148 PSAFSVNRLLSALVAAERVDLAERAFKAALRRRVSPDLFTFNIVISGLCKTGQLRKAGD- 206

Query: 180 FTKFVAFDCRP-NVIPNVICYASIIDGLCKDGFVNK---VRVLFLDMKGRGIYPDAFVYN 235
               VA D R   + P+V+ Y +IIDG CK G   +   V  L  +M   GI P+   +N
Sbjct: 207 ----VAKDIRAWGLAPSVVTYNTIIDGYCKRGRAGRMYHVDALLKEMVEAGISPNEVTFN 262

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
            L+  YC          NT+AA+ + EE      + G+     V++Y +++  LC +  V
Sbjct: 263 VLVNGYC-------KDSNTAAAVRVFEEM----KQQGIAA--SVVTYSALVWGLCSEGKV 309

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           ++  +L  +MK  G++P++   +S+++G+C  G + DA     S+E +   P+  +Y  L
Sbjct: 310 EEGVKLVDEMKDLGLVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTIL 369

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDN---SCILEA----------AELFRTLHNTKF 402
           ++ Y +++K+++AL++   M   GVRP+    +C++            + L   +     
Sbjct: 370 VDGYRRLDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKGV 429

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
             D+  +N L+  LC    +R A +L  ++   G EP  +TY  +I G C +G I+ AY+
Sbjct: 430 RADIVTYNVLIGALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNTIINGYCEKGNIKSAYE 489

Query: 463 LLPDMEEKIR-----------ECL-------KAIELLHKMAKRYVKPDEITVSILEE 501
           +   ME+  +           +CL       +  ELL++M ++ + P+ +T   ++E
Sbjct: 490 IRTRMEKGKKRANVVTYNVFIKCLCRMGKMEETNELLNEMLEKGLVPNGVTYDTIKE 546



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 144/337 (42%), Gaps = 51/337 (15%)

Query: 84  TPFMPSFNSLLGAL-----AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGV 138
            P + ++N+++        AG+ Y+V+   L + +   G+ P+ V+ N+L+N +CK    
Sbjct: 217 APSVVTYNTIIDGYCKRGRAGRMYHVD--ALLKEMVEAGISPNEVTFNVLVNGYCKDSNT 274

Query: 139 SDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN------- 191
           + A      + ++  +  VVT   L+ GLC +GK  E   L  +       PN       
Sbjct: 275 AAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLVPNLATLNSV 334

Query: 192 ------------------------VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI 227
                                   V PNV+ Y  ++DG  +   +     +   M G+G+
Sbjct: 335 LNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYRRLDKMKDALAVKEAMSGKGV 394

Query: 228 YPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIIN 287
            P+A +YN LI  +    +W    G       L E  + G          D+++Y  +I 
Sbjct: 395 RPNARIYNCLIAGFTRNGDWRSVSG------LLDEMRMKG-------VRADIVTYNVLIG 441

Query: 288 SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
           +LC    V KA +L  +M   G+ P  + Y+++I+GYC  G I  A ++   +E      
Sbjct: 442 ALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNTIINGYCEKGNIKSAYEIRTRMEKGKKRA 501

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           +  +YN  I    ++ K+EE   L  EM+  G+ P+ 
Sbjct: 502 NVVTYNVFIKCLCRMGKMEETNELLNEMLEKGLVPNG 538



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 112/270 (41%), Gaps = 17/270 (6%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E ++ + +   + M  +   P + + NS+L     K    +     + +    + P+ V+
Sbjct: 306 EGKVEEGVKLVDEMKDLGLVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVT 365

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
             IL++ + ++  + DA      +  K   P+     CLI G    G +   SGL  +  
Sbjct: 366 YTILVDGYRRLDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMR 425

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
               R +++     Y  +I  LC  G V K   L  +M   G+ P    YN++I  YC  
Sbjct: 426 MKGVRADIV----TYNVLIGALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNTIINGYC-- 479

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                 KGN  +A E+      G          +V++Y   I  LC+   +++  EL  +
Sbjct: 480 -----EKGNIKSAYEIRTRMEKGKKR------ANVVTYNVFIKCLCRMGKMEETNELLNE 528

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
           M  +G++P+ V Y ++ +G    G   D R
Sbjct: 529 MLEKGLVPNGVTYDTIKEGMMEKGYTPDVR 558



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 14/141 (9%)

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
           A   F+     +   DL  FN ++ GLCK+ +LR A ++ K +  +G  P+VVTY  +I 
Sbjct: 169 AERAFKAALRRRVSPDLFTFNIVISGLCKTGQLRKAGDVAKDIRAWGLAPSVVTYNTIID 228

Query: 450 GLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENC 509
           G C  G   + Y +                LL +M +  + P+E+T ++L     KD N 
Sbjct: 229 GYCKRGRAGRMYHV--------------DALLKEMVEAGISPNEVTFNVLVNGYCKDSNT 274

Query: 510 HECMNLLPSFLSRNQEESKLT 530
              + +      +    S +T
Sbjct: 275 AAAVRVFEEMKQQGIAASVVT 295


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 124/452 (27%), Positives = 206/452 (45%), Gaps = 66/452 (14%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++++AL  F  M      P + ++N ++  L         + + + +   GL P+ +++N
Sbjct: 390 QVDEALKKFEEM-KKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVN 448

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           I+++  CK   + DA      +  K   PD VT   LI GL   G+  EA  L+ + +  
Sbjct: 449 IMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQML-- 506

Query: 187 DCRPNVIPNVICYASII-----------------------------------DGLCKDGF 211
               N IPN + Y S+I                                   D + K G 
Sbjct: 507 --DANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGE 564

Query: 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGEL 271
           + K R LF ++K  G  PDA  Y  LI     A            A E +E F     E 
Sbjct: 565 IEKGRALFQEIKNLGFIPDARSYTILIHGLVKA----------GFAHEAYELFYTMK-EQ 613

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
           G  C  D  +Y ++I+  CK   V+KA +L  +MK++G  P VV Y S+IDG   + R+D
Sbjct: 614 G--CVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLD 671

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCIL 388
           +A  LF   +S+G   +   Y++LI+ + K+ +++EA  +  E++  G+ P+    +C+L
Sbjct: 672 EAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLL 731

Query: 389 ----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
                     EA   F+++ + K   +   ++ L+ GLCK  +   A+  ++++ + G +
Sbjct: 732 DALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFK 791

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           PNV TYT MI GL   G I +A  L    +EK
Sbjct: 792 PNVFTYTTMISGLAKAGNIVEADTLFEKFKEK 823



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 114/395 (28%), Positives = 188/395 (47%), Gaps = 31/395 (7%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++ S++G L         + L E ++    +P   + N ++  +       DA+  L R 
Sbjct: 307 TYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQ 366

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
            RK   P VV+  C++  L  +G+  EA   F +      + + IPN+  Y  +ID LCK
Sbjct: 367 RRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEM-----KKDAIPNLSTYNIMIDMLCK 421

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
            G +    V+   MK  G++P+    N ++   C A   +DA     +  E         
Sbjct: 422 AGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDA----CSIFE--------- 468

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
           G     C PD ++YCS+I  L +   VD+A +L+  M     IP+ VVY+SLI  +   G
Sbjct: 469 GLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCG 528

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--NSC 386
           R +D  K++  +   GC PD    NT ++   K  ++E+  +L+ E+ ++G  PD  +  
Sbjct: 529 RKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYT 588

Query: 387 IL-----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
           IL           EA ELF T+      LD   +N ++DG CKS ++  A++L +++   
Sbjct: 589 ILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTK 648

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           G EP VVTY  +I GL     +++AY L  + + K
Sbjct: 649 GHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK 683



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 119/476 (25%), Positives = 191/476 (40%), Gaps = 73/476 (15%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L +A  F   M  ++  P   ++ +L+GAL+  +     + L +++  +G   +     
Sbjct: 180 KLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFT 239

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+  F +   V  A   L  +      PDVV     I      GK   A   F +  A 
Sbjct: 240 TLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKA- 298

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                ++ + + Y S+I  LCK   +N+   LF  M      P A+ YN++I  Y  A  
Sbjct: 299 ---NGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGK 355

Query: 247 WEDA----------------------------KGNTSAALELHEEFVN------------ 266
           +EDA                            KG    AL+  EE               
Sbjct: 356 FEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIM 415

Query: 267 -------GNGELGVICH---------PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
                  G  E  ++           P+V++   +++ LCK   +D A  +F  +  +  
Sbjct: 416 IDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTC 475

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
            PD V Y SLI+G    GR+D+A KL+  +     IP+   Y +LI ++ K  + E+   
Sbjct: 476 RPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHK 535

Query: 371 LYGEMISMGVRPD-------NSCILEAAE------LFRTLHNTKFELDLTVFNCLVDGLC 417
           +Y EM+ +G  PD         C+ +A E      LF+ + N  F  D   +  L+ GL 
Sbjct: 536 IYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLV 595

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
           K+     A+ELF  +   G   +   Y  +I G C  G + KAY LL +M+ K  E
Sbjct: 596 KAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHE 651



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 115/441 (26%), Positives = 180/441 (40%), Gaps = 65/441 (14%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+DA   F  + H    P   ++ SL+  L           L E++     +P+ V    
Sbjct: 460 LDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTS 519

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+  F K     D       +LR   SPD++ L   +  +   G+  +   LF +     
Sbjct: 520 LIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNL- 578

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
                IP+   Y  +I GL K GF ++   LF  MK +G   D   YN++I  +C     
Sbjct: 579 ---GFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFC----- 630

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               G  + A +L EE      E      P V++Y S+I+ L K   +D+A  LF + KS
Sbjct: 631 --KSGKVNKAYQLLEEMKTKGHE------PTVVTYGSVIDGLAKIDRLDEAYMLFEEAKS 682

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKL------------------------------- 336
           +GI  +VV+YSSLIDG+  +GRID+A  +                               
Sbjct: 683 KGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISE 742

Query: 337 ----FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------- 383
               F S++   C P+  +Y+ LI+   KI K  +A   + EM   G +P+         
Sbjct: 743 ALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMIS 802

Query: 384 ----NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
                  I+EA  LF          D  ++N +++GL  + R   A+ LF++    G   
Sbjct: 803 GLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSI 862

Query: 440 NVVTYTVMICGLCIEGGIEKA 460
              T  V++  L     IE+A
Sbjct: 863 YTKTCVVLLDSLHKAECIEQA 883



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 147/313 (46%), Gaps = 19/313 (6%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+GE+E   AL  F  + ++   P   S+  L+  L    +      L   +   G + D
Sbjct: 561 KAGEIEKGRAL--FQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLD 618

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             + N +++ FCK   V+ A+  L  +  K   P VVT G +I GL    +  EA  LF 
Sbjct: 619 TRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFE 678

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           +  +      +  NV+ Y+S+IDG  K G +++  ++  ++  +G+ P+ + +N L+   
Sbjct: 679 EAKS----KGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLL--- 731

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
                  DA      A E+ E  V       + C P+ ++Y  +I+ LCK    +KA   
Sbjct: 732 -------DA---LVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVF 781

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           + +M+ +G  P+V  Y+++I G    G I +A  LF   + +G + D++ YN +I   S 
Sbjct: 782 WQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSN 841

Query: 362 IEKVEEALSLYGE 374
             +  +A  L+ E
Sbjct: 842 ANRASDAYRLFEE 854



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 147/343 (42%), Gaps = 42/343 (12%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P    Y ++I  L      + +  LF  M+  G   +  ++ +LIRV+         +G 
Sbjct: 198 PAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFA-------REGR 250

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
             AAL L +E  + + E      PDV+ Y   I+   K   VD A + F +MK+ G++ D
Sbjct: 251 VDAALSLLDEMKSNSLE------PDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLD 304

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
            V Y+S+I   C   R+++A +LF  ++    +P   +YNT+I  Y    K E+A SL  
Sbjct: 305 DVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLE 364

Query: 374 EMISMGVRP---DNSCIL-------EAAELFRTLHNTKFEL--DLTVFNCLVDGLCKSWR 421
                G  P     +CIL       +  E  +     K +   +L+ +N ++D LCK+ +
Sbjct: 365 RQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGK 424

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELL 481
           L +A  +   +   G  PNV+T  +M+  LC    ++ A  +   ++ K           
Sbjct: 425 LETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKT---------- 474

Query: 482 HKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQ 524
                   +PD +T   L E L +     E   L    L  NQ
Sbjct: 475 -------CRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQ 510



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 80/199 (40%), Gaps = 13/199 (6%)

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           I+ S  K   + +A      M+     P    Y++LI         D    LF  ++  G
Sbjct: 171 IVLSFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELG 230

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCI---------LEAA 391
              +   + TLI  +++  +V+ ALSL  EM S  + PD    N CI           A 
Sbjct: 231 YAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAW 290

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
           + F  +      LD   +  ++  LCK+ RL  A ELF+ + +    P    Y  MI G 
Sbjct: 291 KXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGY 350

Query: 452 CIEGGIEKAYDLLPDMEEK 470
            + G  E AY LL     K
Sbjct: 351 GMAGKFEDAYSLLERQRRK 369


>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Glycine max]
          Length = 642

 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 106/422 (25%), Positives = 202/422 (47%), Gaps = 58/422 (13%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++++L+  L  ++     + L + +   G  P+ V+ N+L++  CK   +  A   +  +
Sbjct: 207 TYSTLMHGLCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNM 266

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
             K   P+ VT   L+ GLC++GK  +A  L  + V+  C    +PN + + ++I+G   
Sbjct: 267 FLKGCVPNEVTYNALVHGLCLKGKLEKAVSLLNQMVSNKC----VPNDVTFGTLINGFVM 322

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
            G  +    + + ++ RG   + +VY+SLI   C        +G  + A+EL +E V G 
Sbjct: 323 QGRASDGTRVLVSLEARGHRGNEYVYSSLISGLC-------KEGKFNQAMELWKEMV-GK 374

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
           G     C P+ + Y ++I+ LC++  +D+A+    +MK++G +P+   YSSL+ GY   G
Sbjct: 375 G-----CGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAG 429

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL 388
               A  ++  + +  CI +   Y+ LIN   K  K  EAL ++ +M+S G++       
Sbjct: 430 DSHKAILVWKEMANNNCIHNEVCYSILINGLCKDGKFMEALMVWKQMLSRGIK------- 482

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP--EPNVVTYTV 446
                          LD+  ++ ++ G C +  +    +LF ++   GP  +P+V+TY +
Sbjct: 483 ---------------LDVVAYSSMIHGFCNANLVEQGLKLFNQMLCQGPVVQPDVITYNI 527

Query: 447 MICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
           ++   CI+  I                  +AI++L+ M  +   PD IT  I  + L ++
Sbjct: 528 LLNAFCIQKSI-----------------FRAIDILNIMLDQGCDPDFITCDIFLKTLREN 570

Query: 507 EN 508
            N
Sbjct: 571 MN 572



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 175/383 (45%), Gaps = 52/383 (13%)

Query: 175 EASGLFTKFVA-FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLF---LDMKGRGIYPD 230
           +A  LF +    F C+  V      + S+++ + ++G  N+    +   +  K   I+P+
Sbjct: 114 KAVDLFHRMWGEFQCKQTVKS----FNSVLNVIVQEGLFNRALEFYNHVVASKSLNIHPN 169

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
           A  +N +I+  C         G    A+E+  E    N      C PD  +Y ++++ LC
Sbjct: 170 ALTFNLVIKAMC-------RLGLVDKAIEVFREIPLRN------CAPDNYTYSTLMHGLC 216

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K+  +D+A  L  +M+  G  P++V ++ LI   C  G +  A KL  ++  +GC+P+  
Sbjct: 217 KEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEV 276

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------NSCILE-----AAELFRTL 397
           +YN L++      K+E+A+SL  +M+S    P+        N  +++        +  +L
Sbjct: 277 TYNALVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSL 336

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                  +  V++ L+ GLCK  +   A EL+K++   G  PN + Y+ +I GLC EG +
Sbjct: 337 EARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKL 396

Query: 458 EKAYDLLPDMEEK------------------IRECLKAIELLHKMAKRYVKPDEITVSIL 499
           ++A   L +M+ K                    +  KAI +  +MA      +E+  SIL
Sbjct: 397 DEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSIL 456

Query: 500 EELLNKDENCHECMNLLPSFLSR 522
              L KD    E + +    LSR
Sbjct: 457 INGLCKDGKFMEALMVWKQMLSR 479


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 124/452 (27%), Positives = 206/452 (45%), Gaps = 66/452 (14%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++++AL  F  M      P + ++N ++  L         + + + +   GL P+ +++N
Sbjct: 390 QVDEALKKFEEM-KKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVN 448

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           I+++  CK   + DA      +  K   PD VT   LI GL   G+  EA  L+ + +  
Sbjct: 449 IMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQML-- 506

Query: 187 DCRPNVIPNVICYASII-----------------------------------DGLCKDGF 211
               N IPN + Y S+I                                   D + K G 
Sbjct: 507 --DANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGE 564

Query: 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGEL 271
           + K R LF ++K  G  PDA  Y  LI     A            A E +E F     E 
Sbjct: 565 IEKGRALFQEIKNLGFIPDARSYTILIHGLVKA----------GFAHEAYELFYTMK-EQ 613

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
           G  C  D  +Y ++I+  CK   V+KA +L  +MK++G  P VV Y S+IDG   + R+D
Sbjct: 614 G--CVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLD 671

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCIL 388
           +A  LF   +S+G   +   Y++LI+ + K+ +++EA  +  E++  G+ P+    +C+L
Sbjct: 672 EAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLL 731

Query: 389 ----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
                     EA   F+++ + K   +   ++ L+ GLCK  +   A+  ++++ + G +
Sbjct: 732 DALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFK 791

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           PNV TYT MI GL   G I +A  L    +EK
Sbjct: 792 PNVFTYTTMISGLAKAGNIVEADTLFEKFKEK 823



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 121/423 (28%), Positives = 200/423 (47%), Gaps = 33/423 (7%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
            K+G+V++  A  FF+ M          ++ S++G L         + L E ++    +P
Sbjct: 281 GKAGKVDM--AWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVP 338

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
              + N ++  +       DA+  L R  RK   P VV+  C++  L  +G+  EA   F
Sbjct: 339 CAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKF 398

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            +      + + IPN+  Y  +ID LCK G +    V+   MK  G++P+    N ++  
Sbjct: 399 EEM-----KKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDR 453

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
            C A   +DA     +  E         G     C PD ++YCS+I  L +   VD+A +
Sbjct: 454 LCKAQRLDDA----CSIFE---------GLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYK 500

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           L+  M     IP+ VVY+SLI  +   GR +D  K++  +   GC PD    NT ++   
Sbjct: 501 LYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVF 560

Query: 361 KIEKVEEALSLYGEMISMGVRPD--NSCIL-----------EAAELFRTLHNTKFELDLT 407
           K  ++E+  +L+ E+ ++G  PD  +  IL           EA ELF T+      LD  
Sbjct: 561 KAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTR 620

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            +N ++DG CKS ++  A++L +++   G EP VVTY  +I GL     +++AY L  + 
Sbjct: 621 AYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEA 680

Query: 468 EEK 470
           + K
Sbjct: 681 KSK 683



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 119/476 (25%), Positives = 191/476 (40%), Gaps = 73/476 (15%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L +A  F   M  ++  P   ++ +L+GAL+  +     + L +++  +G   +     
Sbjct: 180 KLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFT 239

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+  F +   V  A   L  +      PDVV     I      GK   A   F +  A 
Sbjct: 240 TLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKA- 298

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                ++ + + Y S+I  LCK   +N+   LF  M      P A+ YN++I  Y  A  
Sbjct: 299 ---NGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGK 355

Query: 247 WEDA----------------------------KGNTSAALELHEEFVN------------ 266
           +EDA                            KG    AL+  EE               
Sbjct: 356 FEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIM 415

Query: 267 -------GNGELGVICH---------PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
                  G  E  ++           P+V++   +++ LCK   +D A  +F  +  +  
Sbjct: 416 IDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTC 475

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
            PD V Y SLI+G    GR+D+A KL+  +     IP+   Y +LI ++ K  + E+   
Sbjct: 476 RPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHK 535

Query: 371 LYGEMISMGVRPD-------NSCILEAAE------LFRTLHNTKFELDLTVFNCLVDGLC 417
           +Y EM+ +G  PD         C+ +A E      LF+ + N  F  D   +  L+ GL 
Sbjct: 536 IYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLV 595

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
           K+     A+ELF  +   G   +   Y  +I G C  G + KAY LL +M+ K  E
Sbjct: 596 KAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHE 651



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 115/441 (26%), Positives = 180/441 (40%), Gaps = 65/441 (14%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+DA   F  + H    P   ++ SL+  L           L E++     +P+ V    
Sbjct: 460 LDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTS 519

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+  F K     D       +LR   SPD++ L   +  +   G+  +   LF +     
Sbjct: 520 LIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNL- 578

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
                IP+   Y  +I GL K GF ++   LF  MK +G   D   YN++I  +C     
Sbjct: 579 ---GFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFC----- 630

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               G  + A +L EE      E      P V++Y S+I+ L K   +D+A  LF + KS
Sbjct: 631 --KSGKVNKAYQLLEEMKTKGHE------PTVVTYGSVIDGLAKIDRLDEAYMLFEEAKS 682

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKL------------------------------- 336
           +GI  +VV+YSSLIDG+  +GRID+A  +                               
Sbjct: 683 KGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISE 742

Query: 337 ----FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------- 383
               F S++   C P+  +Y+ LI+   KI K  +A   + EM   G +P+         
Sbjct: 743 ALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMIS 802

Query: 384 ----NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
                  I+EA  LF          D  ++N +++GL  + R   A+ LF++    G   
Sbjct: 803 GLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSI 862

Query: 440 NVVTYTVMICGLCIEGGIEKA 460
              T  V++  L     IE+A
Sbjct: 863 YTKTCVVLLDSLHKAECIEQA 883



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 147/313 (46%), Gaps = 19/313 (6%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+GE+E   AL  F  + ++   P   S+  L+  L    +      L   +   G + D
Sbjct: 561 KAGEIEKGRAL--FQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLD 618

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             + N +++ FCK   V+ A+  L  +  K   P VVT G +I GL    +  EA  LF 
Sbjct: 619 TRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFE 678

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           +  +      +  NV+ Y+S+IDG  K G +++  ++  ++  +G+ P+ + +N L+   
Sbjct: 679 EAKS----KGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLL--- 731

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
                  DA      A E+ E  V       + C P+ ++Y  +I+ LCK    +KA   
Sbjct: 732 -------DA---LVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVF 781

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           + +M+ +G  P+V  Y+++I G    G I +A  LF   + +G + D++ YN +I   S 
Sbjct: 782 WQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSN 841

Query: 362 IEKVEEALSLYGE 374
             +  +A  L+ E
Sbjct: 842 ANRASDAYRLFEE 854



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 147/343 (42%), Gaps = 42/343 (12%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P    Y ++I  L      + +  LF  M+  G   +  ++ +LIRV+         +G 
Sbjct: 198 PAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFA-------REGR 250

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
             AAL L +E  + + E      PDV+ Y   I+   K   VD A + F +MK+ G++ D
Sbjct: 251 VDAALSLLDEMKSNSLE------PDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLD 304

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
            V Y+S+I   C   R+++A +LF  ++    +P   +YNT+I  Y    K E+A SL  
Sbjct: 305 DVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLE 364

Query: 374 EMISMGVRP---DNSCIL-------EAAELFRTLHNTKFEL--DLTVFNCLVDGLCKSWR 421
                G  P     +CIL       +  E  +     K +   +L+ +N ++D LCK+ +
Sbjct: 365 RQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGK 424

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELL 481
           L +A  +   +   G  PNV+T  +M+  LC    ++ A  +   ++ K           
Sbjct: 425 LETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKT---------- 474

Query: 482 HKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQ 524
                   +PD +T   L E L +     E   L    L  NQ
Sbjct: 475 -------CRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQ 510



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 80/199 (40%), Gaps = 13/199 (6%)

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           I+ S  K   + +A      M+     P    Y++LI         D    LF  ++  G
Sbjct: 171 IVLSFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELG 230

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCI---------LEAA 391
              +   + TLI  +++  +V+ ALSL  EM S  + PD    N CI           A 
Sbjct: 231 YAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAW 290

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
           + F  +      LD   +  ++  LCK+ RL  A ELF+ + +    P    Y  MI G 
Sbjct: 291 KFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGY 350

Query: 452 CIEGGIEKAYDLLPDMEEK 470
            + G  E AY LL     K
Sbjct: 351 GMAGKFEDAYSLLERQRRK 369


>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
          Length = 796

 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 112/406 (27%), Positives = 183/406 (45%), Gaps = 58/406 (14%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           ERL T   LPD V+ N L++   K    SDA   L  +  K   P +VT   +++ LC +
Sbjct: 340 ERLGTA--LPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKE 397

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           GK  EA G   K         + P+VI Y ++ID  CK G V K   L  +M G+G+  D
Sbjct: 398 GKLEEALGKLEKI----AEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMD 453

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
            F  N+++   C    +EDA           EE ++   + G +  PD +SY +++ +  
Sbjct: 454 TFTLNTVLYNLCKMKRYEDA-----------EELLHSPPQRGFV--PDEVSYGTVMAAYF 500

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K+   + A  L+  M  R +IP +  Y++LI G C M R+ +A         +G +PD +
Sbjct: 501 KEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDET 560

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFN 410
           +YN +I++Y K   +E A   + +M+    +PD                      +   N
Sbjct: 561 TYNIIIHAYCKEGDLENAFRFHNKMVENSFKPD----------------------VVTCN 598

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            L++GLC   +L  A +LF+     G + +V+TY  +I  +C  G ++ A     DME K
Sbjct: 599 TLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVK 658

Query: 471 IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                             ++PD  T +++   L++     E  N+L
Sbjct: 659 -----------------GLQPDAFTYNVVLSALSEAGRSEEAHNML 687



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 112/435 (25%), Positives = 189/435 (43%), Gaps = 33/435 (7%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           +DAL     M      P + + N ++ +L  +      +   E++   GL PD ++ N L
Sbjct: 366 SDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTL 425

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           ++ +CK   V+ AF  +  ++ K    D  TL  ++  LC   ++ +A  L         
Sbjct: 426 IDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHS----PP 481

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
           +   +P+ + Y +++    K+        L+  M  R + P    YN+LI+  C     +
Sbjct: 482 QRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLK 541

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
           +A       ++   EFV    E G++  PD  +Y  II++ CK+  ++ A      M   
Sbjct: 542 EA-------IDKLNEFV----EKGLV--PDETTYNIIIHAYCKEGDLENAFRFHNKMVEN 588

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
              PDVV  ++L++G CL G++D A KLF S   +G   D  +YNTLI S  K+  V+ A
Sbjct: 589 SFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTA 648

Query: 369 LSLYGEMISMGVRPD----NSCILEAAELFRTLHNTKFELDLTVFNCLVDGL-CKSWRLR 423
           L  + +M   G++PD    N  +   +E  R+         L     L     C   +  
Sbjct: 649 LHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGKLSQSFACPLLKPS 708

Query: 424 SAWELFKKLPRYGPEPN---------VVTYTVMICGLCIEGGIEKAYDLLPDMEEKIR-- 472
           SA E   K     PE           + TY   + GLC  G +++A  +L +M +K    
Sbjct: 709 SADEADVKEHEGKPEAESSEKAQDNALETYMERLNGLCTGGQLKEAKAVLDEMMQKGMPV 768

Query: 473 ECLKAIELLHKMAKR 487
           +C   I L+  + KR
Sbjct: 769 DCSTYITLMEGLIKR 783



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 50/114 (43%)

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           L++S  +   V  +L     ++S   R  ++    + ++FR+L   +   +   FN LV 
Sbjct: 157 LLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNLLVH 216

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
             C    L  A      +  +G  P+ VTY  ++   C +G + +A  LL  M+
Sbjct: 217 THCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMK 270


>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
 gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
          Length = 727

 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 182/386 (47%), Gaps = 41/386 (10%)

Query: 85  PFMPSFNSLL-GALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           P + ++N+++ G L  ++     +  +E +  +GLLPD ++ N ++N +CK   + +A  
Sbjct: 347 PTLVTYNAIIHGLLKSEQVEAAQLKFAE-MRAMGLLPDLITYNSMLNGYCKAGNLKEALW 405

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
            LG + R   +P V+T   LI G C  G   EA  L  + V   C     P+V  Y  ++
Sbjct: 406 LLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGC----FPDVCTYTILM 461

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
           +G  K   +   R  F +M  +G+ PD F YN+ I    CA   E   G+T  A +L E 
Sbjct: 462 NGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRI----CA---ELILGDTHKAFQLREV 514

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
            +          +PD ++Y  II+ LCK   +  AK+L + M S G+ PD + Y+ LI  
Sbjct: 515 MMLKG------IYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHA 568

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           +C  G + +ARKL   + S+G  P   +Y  LI++  +   +  A   + +M+ +G+ P+
Sbjct: 569 HCERGLLSEARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPN 628

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                                    +N L+  LC++ R   A+  F ++   G  PN  T
Sbjct: 629 E----------------------ITYNVLIHALCRTGRTLLAYHHFHEMLERGLAPNKYT 666

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEE 469
           YT++I G C EG    A  L  +M +
Sbjct: 667 YTLLIDGNCREGNWADAIRLYFEMHQ 692



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 118/448 (26%), Positives = 190/448 (42%), Gaps = 80/448 (17%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ PD    N ++          D       +L+    P +VT   L+     +G+  EA
Sbjct: 203 GVAPDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFLKEGRKDEA 262

Query: 177 SGLFTKF-----------------VAFDCRPNVIPNV---------------ICYASIID 204
           S L  +                  ++F  R   + N                  Y  +I 
Sbjct: 263 SMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSMRLSKKASSFTYNPLIT 322

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
            L + GFV KV  L ++M+  GI P    YN++I            K     A +L    
Sbjct: 323 ALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLL--------KSEQVEAAQLKFAE 374

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           +   G L     PD+++Y S++N  CK   + +A  L  D++  G+ P V+ Y++LIDGY
Sbjct: 375 MRAMGLL-----PDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGY 429

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD- 383
           C +G +++AR+L   +  +GC PD  +Y  L+N   K+  +  A   + EM+S G++PD 
Sbjct: 430 CRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQPDC 489

Query: 384 ---NSCILEAAELFRTLHNTKFEL-----------DLTVFNCLVDGLCKSWRLRSAWELF 429
              N+ I   AEL     +  F+L           D   +N ++DGLCK+  L+ A +L 
Sbjct: 490 FAYNTRI--CAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLK 547

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK------------IRECLK- 476
            K+   G +P+ +TYT +I   C  G + +A  LL  M               I  C + 
Sbjct: 548 MKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNGMVSDGLQPSVVTYTILIHTCCRR 607

Query: 477 -----AIELLHKMAKRYVKPDEITVSIL 499
                A     KM    ++P+EIT ++L
Sbjct: 608 GNLYSAYGWFRKMLDVGIEPNEITYNVL 635



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 182/426 (42%), Gaps = 67/426 (15%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N L+ AL  + +      L   +   G++P  V+ N +++   K   V  A +    +
Sbjct: 316 TYNPLITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEM 375

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
                 PD++T   ++ G C  G   EA  L         R  + P V+ Y ++IDG C+
Sbjct: 376 RAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLR----RAGLAPTVLTYNTLIDGYCR 431

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
            G + + R L  +M  +G +PD   Y  L+       N      N   A E  +E ++  
Sbjct: 432 LGGLEEARRLKEEMVEQGCFPDVCTYTILM-------NGSHKVRNLPMAREFFDEMLSKG 484

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLV---DKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
                   PD  +Y + I   C ++++    KA +L   M  +GI PD V Y+ +IDG C
Sbjct: 485 ------LQPDCFAYNTRI---CAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLC 535

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
             G + DA+ L + + S+G  PD  +Y  LI+++ +   + EA  L   M+S G++P   
Sbjct: 536 KTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNGMVSDGLQPS-- 593

Query: 386 CILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
                               +  +  L+   C+   L SA+  F+K+   G EPN +TY 
Sbjct: 594 --------------------VVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYN 633

Query: 446 VMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505
           V+I  LC  G                   L A    H+M +R + P++ T ++L      
Sbjct: 634 VLIHALCRTG-----------------RTLLAYHHFHEMLERGLAPNKYTYTLL-----I 671

Query: 506 DENCHE 511
           D NC E
Sbjct: 672 DGNCRE 677



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 105/245 (42%), Gaps = 17/245 (6%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL PD  + N  +     +     AF     ++ K   PD VT   +I GLC  G   +A
Sbjct: 484 GLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDA 543

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L  K V+      + P+ I Y  +I   C+ G +++ R L   M   G+ P    Y  
Sbjct: 544 KDLKMKMVS----DGLQPDCITYTCLIHAHCERGLLSEARKLLNGMVSDGLQPSVVTYTI 599

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI   CC       +GN  +A     +       L V   P+ ++Y  +I++LC+     
Sbjct: 600 LIHT-CCR------RGNLYSAYGWFRKM------LDVGIEPNEITYNVLIHALCRTGRTL 646

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A   F +M  RG+ P+   Y+ LIDG C  G   DA +L+  +   G  PD  ++N L 
Sbjct: 647 LAYHHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALF 706

Query: 357 NSYSK 361
             + K
Sbjct: 707 KGFDK 711



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 119/290 (41%), Gaps = 70/290 (24%)

Query: 273 VICH---PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
           V CH   PDV     ++  L      D  + ++ +M    I P +V Y++L+D +   GR
Sbjct: 199 VACHGVAPDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFLKEGR 258

Query: 330 IDDARKLFVSIESE--GCIPDTSSYNTLINSYSKIEKVEEAL------------------ 369
            D+A  L   +E++  GC+ +  +YN +I+  ++   +E A                   
Sbjct: 259 KDEASMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSMRLSKKASSFTYN 318

Query: 370 ----------------SLYGEMISMGVRPD----NSCI--------LEAAEL-FRTLHNT 400
                           +L  EM + G+ P     N+ I        +EAA+L F  +   
Sbjct: 319 PLITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAM 378

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
               DL  +N +++G CK+  L+ A  L   L R G  P V+TY  +I G C  GG+E+A
Sbjct: 379 GLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEA 438

Query: 461 ------------------YDLLPDMEEKIRECLKAIELLHKMAKRYVKPD 492
                             Y +L +   K+R    A E   +M  + ++PD
Sbjct: 439 RRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQPD 488


>gi|413915825|gb|AFW21589.1| hypothetical protein ZEAMMB73_481763 [Zea mays]
 gi|413923991|gb|AFW63923.1| hypothetical protein ZEAMMB73_685382 [Zea mays]
          Length = 953

 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 197/422 (46%), Gaps = 48/422 (11%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           ++ER+   G+ P  V+   L+  +CKM  + +AF     ++R    PDVVTL  L+ GLC
Sbjct: 246 VAERMKADGVEPSVVTHTTLIGEYCKMKRIEEAFTLYEGMVRSGVLPDVVTLSALVDGLC 305

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
             G+F+EA  LF +      +  V PN + Y + ID L K   VN+   L  +M  RG+ 
Sbjct: 306 RDGRFSEAYALFREM----DKIGVAPNHVTYCTFIDSLAKVQRVNESLGLLGEMVSRGVA 361

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
            D  +Y +++         E+AK     AL  +               P+ ++Y  ++++
Sbjct: 362 MDLVMYTTVMDRLGKEGKIEEAKDVLRHALSDN-------------ITPNCVTYTVLVDA 408

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
            C+   +D A+++ L M+ + + P+VV +SS+++G    G I  A      ++  G  P+
Sbjct: 409 HCRAGNIDGAEQMLLQMEEKSVSPNVVTFSSILNGLVKRGCIAKAAGYMRKMKDSGIAPN 468

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFR 395
             +Y TLI+ + K +  E AL +Y +M+  GV  +             N  I EA  LF+
Sbjct: 469 VVTYGTLIDGFFKCQGQEAALDVYRDMLHEGVEANNFIVDSLVNGLRKNGNIEEAEALFK 528

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            +      LD   +  L+DGL K+  + +A ++ ++L      P+ V Y V I  LC  G
Sbjct: 529 DMGERGLLLDHVNYATLMDGLFKTGNMPAALKVGQELMERNLSPDAVVYNVFINCLCRLG 588

Query: 456 GIEKAYDLLPDMEE----------------KIRE--CLKAIELLHKMAKRYVKPDEITVS 497
              +A   L +M                  + RE    KA++LL++M    +KP+ IT +
Sbjct: 589 KFSEAKSFLKEMRNTGLEPDQATYNTMISAQCREGNTSKALKLLNEMKWSSIKPNLITYT 648

Query: 498 IL 499
            L
Sbjct: 649 TL 650



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 105/418 (25%), Positives = 183/418 (43%), Gaps = 51/418 (12%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           L PD V  N+ +NC C++   S+A   L  +      PD  T   +I   C +G  ++A 
Sbjct: 570 LSPDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISAQCREGNTSKAL 629

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            L  +        ++ PN+I Y +++ GL + G V K + L  +M   G  P    Y  +
Sbjct: 630 KLLNEMK----WSSIKPNLITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTPTPLTYRRV 685

Query: 238 IRVYCCAVNWEDAKGNTS--AALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           ++   C+       G+ S    LE+HE        +G   H D+  Y ++++ LC   + 
Sbjct: 686 LQ--ACS-------GSRSPYVILEVHELM------MGAGLHADITVYNTLVHVLCCHGMT 730

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
            KA  +  +M  RGI PD + +++LI G+C    +D+A   +  +  +G  P+ +++NTL
Sbjct: 731 RKATIVLDEMLGRGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQGLSPNIATFNTL 790

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKF 402
           +       ++ EA ++  EM  MG+ P+N             S  +EA  L+  + +  F
Sbjct: 791 LGGLESAGRIGEADTVICEMKKMGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGF 850

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
               + +N L+    K+  +  A ELF ++ R G     V +T               YD
Sbjct: 851 IPKASTYNSLISDFAKAGMMNQAKELFSEMKRRG-----VLHT------------SSTYD 893

Query: 463 LLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
           +L +   K+R   +   LL  M +   KP + T+S +    +K     E   LL +  
Sbjct: 894 ILLNGWSKLRNGTEVRILLKDMKELGFKPSKGTISSMSRAFSKPGMTWEARRLLKTLF 951



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/397 (26%), Positives = 175/397 (44%), Gaps = 55/397 (13%)

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           D VS NI +    +      A   L  + ++    D VT+   + GL   G   EA+ L 
Sbjct: 116 DTVSYNIFLAGLSEQGHGRLAPPVLSEMCKRGVPWDGVTMSTALVGLSRTGLVGEAAALA 175

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
              V       +   V+ + ++IDG CK   +     +   M  +G+  D   YN+L+  
Sbjct: 176 EMLVRGRGIDGL--GVVGWNALIDGYCKVQDMAAALAVVERMTTQGLSLDVVGYNTLVAG 233

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
           +  +       G+  AA E+ E  +  +G       P V+++ ++I   CK   +++A  
Sbjct: 234 FFYS-------GDADAAWEVAER-MKADG-----VEPSVVTHTTLIGEYCKMKRIEEAFT 280

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           L+  M   G++PDVV  S+L+DG C  GR  +A  LF  ++  G  P+  +Y T I+S +
Sbjct: 281 LYEGMVRSGVLPDVVTLSALVDGLCRDGRFSEAYALFREMDKIGVAPNHVTYCTFIDSLA 340

Query: 361 KIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           K+++V E+L L GEM+S GV                       +DL ++  ++D L K  
Sbjct: 341 KVQRVNESLGLLGEMVSRGV----------------------AMDLVMYTTVMDRLGKEG 378

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI--------- 471
           ++  A ++ +        PN VTYTV++   C  G I+ A  +L  MEEK          
Sbjct: 379 KIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVTFS 438

Query: 472 --------RECL-KAIELLHKMAKRYVKPDEITVSIL 499
                   R C+ KA   + KM    + P+ +T   L
Sbjct: 439 SILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTL 475



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 185/400 (46%), Gaps = 36/400 (9%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + +  +L+G     K       L E +   G+LPD V+L+ L++  C+    S+A+ A
Sbjct: 257 PSVVTHTTLIGEYCKMKRIEEAFTLYEGMVRSGVLPDVVTLSALVDGLCRDGRFSEAY-A 315

Query: 145 LGRILRKV-FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
           L R + K+  +P+ VT    I  L    +  E+ GL  + V+      V  +++ Y +++
Sbjct: 316 LFREMDKIGVAPNHVTYCTFIDSLAKVQRVNESLGLLGEMVS----RGVAMDLVMYTTVM 371

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
           D L K+G + + + +        I P+   Y  L+  +C A N + A+      L++ E+
Sbjct: 372 DRLGKEGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAE---QMLLQMEEK 428

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
            V+          P+V+++ SI+N L K   + KA      MK  GI P+VV Y +LIDG
Sbjct: 429 SVS----------PNVVTFSSILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLIDG 478

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           +      + A  ++  +  EG   +    ++L+N   K   +EEA +L+ +M   G+  D
Sbjct: 479 FFKCQGQEAALDVYRDMLHEGVEANNFIVDSLVNGLRKNGNIEEAEALFKDMGERGLLLD 538

Query: 384 N---SCILEAAELFRT------------LHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
           +   + +++   LF+T            L       D  V+N  ++ LC+  +   A   
Sbjct: 539 HVNYATLMDG--LFKTGNMPAALKVGQELMERNLSPDAVVYNVFINCLCRLGKFSEAKSF 596

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
            K++   G EP+  TY  MI   C EG   KA  LL +M+
Sbjct: 597 LKEMRNTGLEPDQATYNTMISAQCREGNTSKALKLLNEMK 636



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 103/432 (23%), Positives = 187/432 (43%), Gaps = 66/432 (15%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            + +A   +  M+     P + + ++L+  L     +     L   ++ IG+ P+ V+  
Sbjct: 274 RIEEAFTLYEGMVRSGVLPDVVTLSALVDGLCRDGRFSEAYALFREMDKIGVAPNHVTYC 333

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL------- 179
             ++   K+  V+++   LG ++ +  + D+V    ++  L  +GK  EA  +       
Sbjct: 334 TFIDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMDRLGKEGKIEEAKDVLRHALSD 393

Query: 180 --------FTKFVAFDCRP----------------NVIPNVICYASIIDGLCKDGFVNKV 215
                   +T  V   CR                 +V PNV+ ++SI++GL K G + K 
Sbjct: 394 NITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVTFSSILNGLVKRGCIAKA 453

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
                 MK  GI P+   Y +LI  +      E       AAL+++ + ++     GV  
Sbjct: 454 AGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQE-------AALDVYRDMLHE----GVEA 502

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
           +  ++   S++N L K+  +++A+ LF DM  RG++ D V Y++L+DG    G +  A K
Sbjct: 503 NNFIVD--SLVNGLRKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLFKTGNMPAALK 560

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395
           +   +      PD   YN  IN   ++ K  EA S   EM + G+ PD +          
Sbjct: 561 VGQELMERNLSPDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQA---------- 610

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
                        +N ++   C+      A +L  ++     +PN++TYT ++ GL   G
Sbjct: 611 ------------TYNTMISAQCREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGLLEAG 658

Query: 456 GIEKAYDLLPDM 467
            +EKA  LL +M
Sbjct: 659 VVEKAKYLLNEM 670



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 151/349 (43%), Gaps = 26/349 (7%)

Query: 23  NSKKPISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQ 82
           N+ K + L +E + SS+  N ++       LL+       +G VE   A    N M    
Sbjct: 624 NTSKALKLLNEMKWSSIKPNLITYTTLVVGLLE-------AGVVE--KAKYLLNEMASAG 674

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142
            TP   ++  +L A +G +     + + E +   GL  D    N L++  C       A 
Sbjct: 675 FTPTPLTYRRVLQACSGSRSPYVILEVHELMMGAGLHADITVYNTLVHVLCCHGMTRKAT 734

Query: 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202
           + L  +L +  +PD +T   LI G C       A   + + +       + PN+  + ++
Sbjct: 735 IVLDEMLGRGIAPDTITFNALILGHCKSSHLDNAFATYAQML----HQGLSPNIATFNTL 790

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
           + GL   G + +   +  +MK  G+ P+   Y+ L+  Y         K N   AL L+ 
Sbjct: 791 LGGLESAGRIGEADTVICEMKKMGLEPNNLTYDILVTGYA-------KKSNKVEALRLYC 843

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
           E V+     G I  P   +Y S+I+   K  ++++AKELF +MK RG++     Y  L++
Sbjct: 844 EMVSK----GFI--PKASTYNSLISDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLN 897

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           G+  +    + R L   ++  G  P   + +++  ++SK     EA  L
Sbjct: 898 GWSKLRNGTEVRILLKDMKELGFKPSKGTISSMSRAFSKPGMTWEARRL 946


>gi|225454948|ref|XP_002277434.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Vitis vinifera]
          Length = 835

 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 132/484 (27%), Positives = 218/484 (45%), Gaps = 47/484 (9%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E++ A+     M    P P + ++N+L+              L   ++ + L P+ ++  
Sbjct: 32  EISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYT 91

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ +CK   + DA      +  K   PDVVT  C++ GLC  GK  EA  +F +    
Sbjct: 92  TLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEV 151

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                V+PN   YA++ID L K+G V +  VL   M  RGI  D  VY +L+     A  
Sbjct: 152 ----GVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGM 207

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
             +A+      LE  E  V           P+ ++Y ++I+  CK   V+K + L  +M+
Sbjct: 208 ANNAEDMFQVLLE--ESLV-----------PNCVTYSALIDGHCKLGDVNKGELLLQEME 254

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            + I P+V+VYSS++DGY   G +++A  +   +     +P+   Y TLI+ Y K ++  
Sbjct: 255 EKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRG 314

Query: 367 EALSLYGEMISMGVRPDNSCI-------------LEAAELFRTLHNTKFELDLTVFNCLV 413
            AL L+ EM S G+  +N  I              EA ELF+ + +     D   +  ++
Sbjct: 315 IALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMM 374

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE--------KAYDLLP 465
           DG  K+ +   A+ + +++       +VV Y V+I GL   G  E        +   L P
Sbjct: 375 DGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESFHTGMRQLGLAP 434

Query: 466 DMEE---------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           D            K      A++LL++M    +KP+ IT +IL + L       + M+LL
Sbjct: 435 DSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLL 494

Query: 517 PSFL 520
              L
Sbjct: 495 NDML 498



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 120/406 (29%), Positives = 187/406 (46%), Gaps = 42/406 (10%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           KSG+VE  +A   F  M  +   P   S+ +L+ +L  +        L  R+   G+  D
Sbjct: 134 KSGKVE--EAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFD 191

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V    LM+   K    ++A      +L +   P+ VT   LI G C  G   +   L  
Sbjct: 192 VVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQ 251

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           +        ++ PNVI Y+SI+DG  K G +N+   +   M  R I P+ FVY +LI  Y
Sbjct: 252 EME----EKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGY 307

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
             A    D +G    AL+L +E  +   E       +     S +N+L +   +++A EL
Sbjct: 308 FKA----DQRG---IALDLFKEMKSRGLE------ENNFVIDSFVNNLKRSGRMEEADEL 354

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F DM SRG++PD V Y+S++DG+   G+  DA  +   +  +    D  +YN LIN   K
Sbjct: 355 FKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFK 414

Query: 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
           + K E   S +  M  +G+ PD++                       FN +++  CK   
Sbjct: 415 LGKYESE-SFHTGMRQLGLAPDSA----------------------TFNTMINAYCKEGN 451

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           L +A +L  ++  YG +PN +T  +++  LC  G IEK  DLL DM
Sbjct: 452 LGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDM 497



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 171/358 (47%), Gaps = 55/358 (15%)

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
            P +  +V  +  +IDG C++G +++   L   MK  G  PD   YN+L+  +C      
Sbjct: 10  HPEIRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFC------ 63

Query: 249 DAKGNTSAALELHEEFVNGNGELGVI-CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
              G+   A +L        GE+ ++   P+V++Y ++I++ CK   ++ A  ++ +M  
Sbjct: 64  -KIGDLFTAKKLM-------GEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTV 115

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           + ++PDVV Y+ +++G C  G++++A+ +F  +E  G +P+  SY TLI+S  K   V E
Sbjct: 116 KSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAE 175

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           A  L G M+  G+                        D+ V+  L+DGL K+    +A +
Sbjct: 176 AFVLQGRMVVRGI----------------------GFDVVVYTALMDGLFKAGMANNAED 213

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK----------------I 471
           +F+ L      PN VTY+ +I G C  G + K   LL +MEEK                 
Sbjct: 214 MFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYT 273

Query: 472 RECL--KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEES 527
           ++ L  +A++++ KM +R + P+      L +   K +     ++L     SR  EE+
Sbjct: 274 KKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEEN 331



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 164/375 (43%), Gaps = 52/375 (13%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GLLPD V+   +M+ F K    SDAF     +  K    DVV    LI GL   GK+   
Sbjct: 362 GLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESE 421

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
           S     F     +  + P+   + ++I+  CK+G +     L  +MK  G+ P++   N 
Sbjct: 422 S-----FHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNI 476

Query: 237 LIRVYCCAVNWE-------------------------DAKGNTSAA---LELHEEFVNGN 268
           L++  C A   E                         DA   +  A   L +H++ V   
Sbjct: 477 LVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHMHDQLV--- 533

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
              G+    D+ +Y ++I++ C+  ++ +A  +F DM  +GI+ D++ Y++LI GYC+  
Sbjct: 534 ---GMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISS 590

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC-- 386
            +  A  +   + +EG  P+  +YN L+   S    ++EA  L  +M   G+ P+ +   
Sbjct: 591 HLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYD 650

Query: 387 -----------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
                      + E  +L+  +    F      +N L+    K  ++  A EL +++   
Sbjct: 651 ILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVR 710

Query: 436 GPEPNVVTYTVMICG 450
           G  PN  TY ++ICG
Sbjct: 711 GIPPNSSTYDILICG 725



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 111/476 (23%), Positives = 198/476 (41%), Gaps = 94/476 (19%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           L+P+ V+ + L++  CK+  V+   + L  +  K   P+V+    ++ G   +G   EA 
Sbjct: 223 LVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAM 282

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCK--------------------------DGF 211
            +  K V    + N++PNV  Y ++IDG  K                          D F
Sbjct: 283 DVMRKMV----QRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSF 338

Query: 212 VNKVRV---------LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA------KGNTSA 256
           VN ++          LF DM  RG+ PD   Y S++  +  A    DA          S+
Sbjct: 339 VNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSS 398

Query: 257 ALEL-----------------HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             ++                  E F  G  +LG+   PD  ++ ++IN+ CK+  +  A 
Sbjct: 399 GFDVVAYNVLINGLFKLGKYESESFHTGMRQLGLA--PDSATFNTMINAYCKEGNLGNAL 456

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           +L  +MKS G+ P+ +  + L+   C  G I+    L   +   G  P  +++  ++++ 
Sbjct: 457 KLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDAS 516

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDL 406
           SK  + +  L ++ +++ MGV+ D S              I  A  +F+ +       D+
Sbjct: 517 SKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADI 576

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             +N L+ G C S  L+ A+ +  ++   G  PNV TY +++ GL     I++A  L+  
Sbjct: 577 ITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQ 636

Query: 467 MEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
           M+E                 R + P+  T  IL     K  N  EC+ L    +++
Sbjct: 637 MKE-----------------RGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITK 675



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 150/334 (44%), Gaps = 30/334 (8%)

Query: 52  KLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSE 111
           KL KY SE+  +G  +L  A             P   +FN+++ A   +    N + L  
Sbjct: 414 KLGKYESESFHTGMRQLGLA-------------PDSATFNTMINAYCKEGNLGNALKLLN 460

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
            + + GL P+ ++ NIL+   C    +      L  +L   F P   T   ++       
Sbjct: 461 EMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSR 520

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
           +      +  + V    +     ++  Y ++I   C+ G + +  ++F DM G+GI  D 
Sbjct: 521 RADVILHMHDQLVGMGVK----LDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADI 576

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
             YN+LI  YC + + +        A  +H + +           P+V +Y  ++  L  
Sbjct: 577 ITYNALIHGYCISSHLKK-------AFAVHSQMLTEG------VSPNVETYNILLGGLSA 623

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
             L+ +A  L   MK RG++P+   Y  L+ G+  +G + +  KL+  + ++G +P T +
Sbjct: 624 ARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRT 683

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
           YN LI+ ++K +K+ +A  L  EM   G+ P++S
Sbjct: 684 YNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSS 717



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 134/302 (44%), Gaps = 41/302 (13%)

Query: 63  SGEVE-----LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIG 117
           +GE+E     LND L     ++   PTP   +  ++L A +  +     + + ++L  +G
Sbjct: 484 AGEIEKTMDLLNDML-----VMGFHPTP--TTHKAVLDASSKSRRADVILHMHDQLVGMG 536

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           +  D  + N L++ FC++  +  A +    ++ K    D++T   LI G C+     +A 
Sbjct: 537 VKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAF 596

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            + ++ +       V PNV  Y  ++ GL     + +   L   MK RG+ P+A  Y+ L
Sbjct: 597 AVHSQMLT----EGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDIL 652

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
                  V+     GN    ++L+ E +      G +  P   +Y  +I+   K   + +
Sbjct: 653 -------VSGHGKIGNMKECVKLYCEMITK----GFV--PKTRTYNVLISCFAKGKKMSQ 699

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR------------IDDARKLFVSIESEGC 345
           AKEL  +M+ RGI P+   Y  LI G+  + +              +A++LF  +  +G 
Sbjct: 700 AKELMQEMQVRGIPPNSSTYDILICGWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGF 759

Query: 346 IP 347
           IP
Sbjct: 760 IP 761


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score =  157 bits (398), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 110/412 (26%), Positives = 190/412 (46%), Gaps = 33/412 (8%)

Query: 74  FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
           FF  MI     P + ++N ++  +  +        L E +   GL+PD V+ N +++ + 
Sbjct: 120 FFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYG 179

Query: 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
           K+  + D       +      PDV+T   LI   C  GK  +    + +      +  + 
Sbjct: 180 KVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMK----QSGLK 235

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           PNV+ Y++++D  CK+  + +    ++DM+  G  P+ F Y SL+   C         GN
Sbjct: 236 PNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANC-------KIGN 288

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
            S A  L  E +    E+GV    +V++Y ++I+ LC    + +A++LF  M + G+IP+
Sbjct: 289 LSDAFRLANEML----EVGV--EWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPN 342

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           +  Y++LI G+     +D A +L   ++  G  PD   Y T I     +EK+E A  +  
Sbjct: 343 LASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMN 402

Query: 374 EMISMGVRPDNSCIL--------------EAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
           EM   G++  N+ I               E   L   +     E+ +  F  L+DGLCK+
Sbjct: 403 EMQENGIKA-NTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKN 461

Query: 420 WRLRSAWELFKKLPR-YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
             +  A + F ++   +G +PN   YT MI GLC E  ++ A  L   M ++
Sbjct: 462 KLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQE 513



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 118/431 (27%), Positives = 190/431 (44%), Gaps = 72/431 (16%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           KSG+  L   L F+  M      P + S+++L+ A   +      I     +  +G +P+
Sbjct: 215 KSGK--LPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPN 272

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             +   L++  CK+  +SDAF     +L      +VVT   LI GLC   +  EA  LF 
Sbjct: 273 EFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFG 332

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           K V       VIPN+  Y ++I G  K   +++   L  ++KGRGI PD  +Y + I   
Sbjct: 333 KMVT----AGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGL 388

Query: 242 CCAVNWEDAK----------------------------GNTSAALELHEEFVNGNGELGV 273
           C     E AK                            GN +  L L EE    + E+ V
Sbjct: 389 CGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTV 448

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR-GIIPDVVVYSSLIDGYCLMGRIDD 332
           +      ++C +I+ LCK+ LV KA + F  M +  G+ P+  VY+++IDG C   ++  
Sbjct: 449 V------TFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKA 502

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392
           A  LF  +  EG +PD ++Y +L++   K   + EAL+L  +M  +G++           
Sbjct: 503 ATTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEALALRDKMAEIGMK----------- 551

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
                      LDL  +  LV G  +  +L+ A    +++      P+ V        LC
Sbjct: 552 -----------LDLLAYTSLVWGFSQCNQLQKARSFLEEMIGEEILPDEV--------LC 592

Query: 453 IEGGIEKAYDL 463
           I G ++K Y+L
Sbjct: 593 I-GVLKKHYEL 602



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 159/372 (42%), Gaps = 79/372 (21%)

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD 209
           R V  P       L   L   G   EA+  F+K   F     V P       ++    K 
Sbjct: 56  RNVCVPGFGVFDALFSVLIDLGMLEEATQCFSKMKRF----RVFPKTRSCNGLLHKFAKL 111

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE------ 263
           G  + V+  F DM G G  P  F YN +I        W++  G+  AA  L EE      
Sbjct: 112 GKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCM-----WKE--GDIEAARGLFEEMKFRGL 164

Query: 264 ---------FVNGNGELGVI--------------CHPDVLSYCSIINSLCKDVLVDKAKE 300
                     ++G G++G +              C PDV++Y S+IN  CK   + K  E
Sbjct: 165 IPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLE 224

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
            + +MK  G+ P+VV YS+L+D +C    +  A K +V +   G +P+  +Y +L+++  
Sbjct: 225 FYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANC 284

Query: 361 KIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           KI  + +A  L  EM+ +GV                      E ++  +  L+DGLC + 
Sbjct: 285 KIGNLSDAFRLANEMLEVGV----------------------EWNVVTYTALIDGLCDAE 322

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIEL 480
           R++ A +LF K+   G  PN+ +Y  +I G                   K +   +A+EL
Sbjct: 323 RMKEAEKLFGKMVTAGVIPNLASYNALIHGFV-----------------KAKNMDRALEL 365

Query: 481 LHKMAKRYVKPD 492
           L+++  R ++PD
Sbjct: 366 LNELKGRGIQPD 377


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 120/473 (25%), Positives = 215/473 (45%), Gaps = 49/473 (10%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLL-GALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +DAL  F+ M+ M   P   ++N+++ G + G      F    + L+  G  P+ V+ N+
Sbjct: 211 SDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHD-GPKPNVVTYNV 269

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++  C+   + +    +  +      PD  T   L  GL   G+      LF + +   
Sbjct: 270 LLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESL--- 326

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            +  V+      + +++GLCKDG V K + +F  +   G+ P   +YN+LI  YC     
Sbjct: 327 -KKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYC---QV 382

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
            D +G      ++    +           PD ++Y ++IN LCK  +V KA++L ++M+ 
Sbjct: 383 RDLRGAFCIFEQMKSRHI----------RPDHITYNALINGLCKLEMVTKAEDLVMEMEK 432

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            G+ P V  +++LID Y   G+++    +   ++ +G   D  S+ +++ ++ K  K+ E
Sbjct: 433 SGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPE 492

Query: 368 ALSLYGEMISMGVRPD----NSCI---LEAAE------LFRTLHNTKFELDLTVFNCLVD 414
           A+++  +MI   V P+    NS I   +E+ +      L   + N+     +  +N L+ 
Sbjct: 493 AVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLK 552

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC 474
           GLC+S ++  A EL   L   G  P+VV+Y  +I   C +G  +KA              
Sbjct: 553 GLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKA-------------- 598

Query: 475 LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEES 527
              +ELL +M K  ++P   T   L   L      H+   L    L +N E S
Sbjct: 599 ---LELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEPS 648



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 145/315 (46%), Gaps = 25/315 (7%)

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           F  ++H    P    +N+L+      +      C+ E++ +  + PD ++ N L+N  CK
Sbjct: 357 FEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCK 416

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK----FTEASGLFTKFVAFDCRP 190
           +  V+ A   +  + +    P V T   LI      G+    FT  S +  K +  D   
Sbjct: 417 LEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSD--- 473

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
                VI + S++   CK+G + +   +  DM  + + P+A VYNS+I  Y         
Sbjct: 474 -----VISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYI-------E 521

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
            G+T  AL L E+  N            +++Y  ++  LC+   +D+A+EL   ++++G+
Sbjct: 522 SGDTEQALLLVEKMKNSG------VSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGL 575

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
            PDVV Y+++I   C  G  D A +L   +   G  P   + +TL+++ +   +V +   
Sbjct: 576 RPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMEC 635

Query: 371 LYGEMISMGVRPDNS 385
           LY +M+   V P +S
Sbjct: 636 LYQQMLHKNVEPSSS 650



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 135/319 (42%), Gaps = 17/319 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L  A C F  M      P   ++N+L+  L   +       L   +   G+ P   + N
Sbjct: 384 DLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFN 443

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ +     +   F  L  + +K    DV++ G +++  C  GK  EA  +    +  
Sbjct: 444 TLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYK 503

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           D    V PN   Y SIID   + G   +  +L   MK  G+      YN L++  C +  
Sbjct: 504 D----VAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQ 559

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            ++A           EE +      G+   PDV+SY +II++ C     DKA EL  +M 
Sbjct: 560 IDEA-----------EELIYTLRNQGL--RPDVVSYNTIISACCNKGDTDKALELLQEMN 606

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
             GI P +    +L+      GR+ D   L+  +  +   P +S Y  ++++Y + E   
Sbjct: 607 KYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDS 666

Query: 367 EALSLYGEMISMGVRPDNS 385
           +  SL  EM   G+  D++
Sbjct: 667 KVASLKKEMSEKGIAFDDT 685



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 93/219 (42%), Gaps = 32/219 (14%)

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM-ISM 378
           L++    +GR  D R  F  + + G  PDT ++N ++ +      ++ AL++   M  S 
Sbjct: 128 LLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAMLRRMGRSE 187

Query: 379 GVRPDNSCIL--------------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
           G  P ++                 +A ++F  + +     +   +N ++DG  K   L +
Sbjct: 188 GAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEA 247

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKM 484
            + L  ++   GP+PNVVTY V++ GLC  G +++                    L+ +M
Sbjct: 248 GFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETR-----------------ALMDEM 290

Query: 485 AKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
           A   + PD  T SIL + L +       ++L    L + 
Sbjct: 291 ASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKG 329


>gi|356564530|ref|XP_003550506.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g11690-like [Glycine max]
          Length = 556

 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 122/416 (29%), Positives = 195/416 (46%), Gaps = 39/416 (9%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           + AL F ++MIH    P   +FN+LL  L    Y+     +   L +  +L  + S  I+
Sbjct: 106 DQALTFLHHMIHEGHAPLSNTFNNLLCLLIRSNYFDKAWWIFNVLKSKVVLNAY-SFGIM 164

Query: 129 MNCFCKMIGVSDAFVALGRILRKV----FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
           +   C+    +  FV + R+L  +     SP+VV    LI G C  G    A  LF K  
Sbjct: 165 ITGCCE----AGYFVRVFRLLAVLEEFGLSPNVVIYTTLIDGCCKNGDVMLAKNLFCKMD 220

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
               R  ++PN   Y+ +++G  K G   +   ++ +M   GI P+A+ YN LI  YC  
Sbjct: 221 ----RLGLVPNQHTYSVLMNGFFKQGLQREGFQMYENMNRSGIVPNAYAYNCLISEYC-- 274

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                  G    A ++  E      E G+ C   V++Y  +I  LC+     +A +L   
Sbjct: 275 -----NDGMVDKAFKVFAEM----REKGIAC--GVMTYNILIGGLCRGKKFGEAVKLVHK 323

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           +   G+ P++V Y+ LI+G+C +G++D A +LF  ++S G  P   +YNTLI  YSK+E 
Sbjct: 324 VNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVEN 383

Query: 365 VEEALSLYGEM---------ISMGVRPDNSCIL----EAAELFRTLHNTKFELDLTVFNC 411
           +  AL L  EM         ++  +  D    L    +A E+   +  +    D+  ++ 
Sbjct: 384 LAGALDLVKEMEERCIARSKVTYTILIDAFARLNYTDKACEMHSLMEKSGLVPDVYTYSV 443

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           L+ G C +  ++ A + FK L     +PN V Y  MI G C EG   +A  LL +M
Sbjct: 444 LIHGXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEM 499



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 148/322 (45%), Gaps = 19/322 (5%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G+V L   L  F  M  +   P   +++ L+     +        + E +N  G++P+
Sbjct: 205 KNGDVMLAKNL--FCKMDRLGLVPNQHTYSVLMNGFFKQGLQREGFQMYENMNRSGIVPN 262

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             + N L++ +C    V  AF     +  K  +  V+T   LI GLC   KF EA  L  
Sbjct: 263 AYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVH 322

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           K      +  + PN++ Y  +I+G C  G ++    LF  +K  G+ P    YN+LI  Y
Sbjct: 323 KV----NKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGY 378

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
                      N + AL+L +E      E   I    V +Y  +I++  +    DKA E+
Sbjct: 379 -------SKVENLAGALDLVKEM-----EERCIARSKV-TYTILIDAFARLNYTDKACEM 425

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
              M+  G++PDV  YS LI G C+ G + +A K F S+      P++  YNT+I+ Y K
Sbjct: 426 HSLMEKSGLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTMIHGYCK 485

Query: 362 IEKVEEALSLYGEMISMGVRPD 383
                 AL L  EM+  G+ P+
Sbjct: 486 EGSSYRALRLLNEMVHSGMVPN 507



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 161/390 (41%), Gaps = 58/390 (14%)

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++N +        A   L  ++ +  +P   T   L+  L     F +A  +F       
Sbjct: 95  IVNAYVHSHSTDQALTFLHHMIHEGHAPLSNTFNNLLCLLIRSNYFDKAWWIFNVL---- 150

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            +  V+ N   +  +I G C+ G+  +V  L   ++  G+ P+  +Y +LI   CC    
Sbjct: 151 -KSKVVLNAYSFGIMITGCCEAGYFVRVFRLLAVLEEFGLSPNVVIYTTLIDG-CCK--- 205

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               G+   A  L  +       LG++  P+  +Y  ++N   K  L  +  +++ +M  
Sbjct: 206 ---NGDVMLAKNLFCKM----DRLGLV--PNQHTYSVLMNGFFKQGLQREGFQMYENMNR 256

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            GI+P+   Y+ LI  YC  G +D A K+F  +  +G      +YN LI    + +K  E
Sbjct: 257 SGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGE 316

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           A+ L  ++  +G+ P+                      +  +N L++G C   ++ +A  
Sbjct: 317 AVKLVHKVNKVGLSPN----------------------IVTYNILINGFCDVGKMDTAVR 354

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------ 469
           LF +L   G  P +VTY  +I G      +  A DL+ +MEE                  
Sbjct: 355 LFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIARSKVTYTILIDAFA 414

Query: 470 KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           ++    KA E+   M K  + PD  T S+L
Sbjct: 415 RLNYTDKACEMHSLMEKSGLVPDVYTYSVL 444


>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
          Length = 442

 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 109/411 (26%), Positives = 192/411 (46%), Gaps = 31/411 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++ DAL   + M+     P + ++N LL A    + Y   + L + +   G  P+ V+ N
Sbjct: 22  QVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYN 81

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +LM+  C    V DA   L  +      P  V    +++GLC   ++ +A  L T+ +  
Sbjct: 82  VLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRE 141

Query: 187 DCRPN-VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
           +C PN    NV+ Y+     LC+ G + +   L   M   G   +   YN++I   C   
Sbjct: 142 NCPPNEATFNVVIYS-----LCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQR 196

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
           N + A G  S                   C PD+++Y +++  LC       A+EL  +M
Sbjct: 197 NVDGAMGLLSKMKSYG-------------CKPDIVTYNTLLKGLCSAARWVDAEELMDNM 243

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
              G +PD V +++LI   C  G + DA ++F  +  +GC P++ +Y+T+I+  +K  K+
Sbjct: 244 TQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKL 303

Query: 366 EEALSLYGEMISMGVRP------------DNSCILEAAELFRTLHNTKFELDLTVFNCLV 413
           ++AL L+ EM   G  P            D+  I EA +  R L ++       ++N ++
Sbjct: 304 DQALELFNEMGHKGFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAIL 363

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            GLC++ +   A ++   +   G  P+ +TY ++I GL  EG + +A +LL
Sbjct: 364 LGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELL 414



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 173/395 (43%), Gaps = 57/395 (14%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+  + N L++  C+   V DA   L  +L +  +PDVVT   L+   C    + +A  L
Sbjct: 5   PNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMEL 64

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
                A  C PN +     Y  ++DG+C +G V+    L  ++   G  P    YN++++
Sbjct: 65  IDLMRAEGCTPNNVT----YNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLK 120

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C A  W DA        EL  E +  N      C P+  ++  +I SLC+  L+ +A 
Sbjct: 121 GLCSAERWGDAD-------ELVTEMLREN------CPPNEATFNVVIYSLCRKGLLQQAI 167

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           +L   M   G   ++V Y+++I+G C    +D A  L   ++S GC PD  +YNTL+   
Sbjct: 168 QLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGL 227

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
               +  +A  L   M   G  PDN                        FN L+  LC+ 
Sbjct: 228 CSAARWVDAEELMDNMTQNGCLPDN----------------------VTFNTLIGFLCQK 265

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIE 479
             +  A E+FK++P  G  PN +TY+ +I GL                  K  +  +A+E
Sbjct: 266 GLMVDAIEVFKQMPDKGCTPNSITYSTIISGL-----------------AKATKLDQALE 308

Query: 480 LLHKMAKRYVKPDEITVSILEELLNKDENCHECMN 514
           L ++M  +   PD+I   +L E LN D+   E + 
Sbjct: 309 LFNEMGHKGFNPDKI-YQLLAECLNDDDTIEEAIQ 342


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 128/469 (27%), Positives = 211/469 (44%), Gaps = 50/469 (10%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           +A+     M     +P + S+N+L+  L   K     + L   +   G  P+ V+   LM
Sbjct: 16  EAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLM 75

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           +  CK   + +A   L  + +K F  DVV  G LI G C  G       LF + +     
Sbjct: 76  DGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLG---- 131

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
             +  NV+ Y+ ++ GLC+ G   +   +   M   GI+PD   Y  LI   C       
Sbjct: 132 KGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLC------- 184

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
             G  + A++L    V    E      P  ++Y  +++ LCK+ LV  A ++   M  +G
Sbjct: 185 KDGRATHAMDLLNLMVEKGEE------PSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKG 238

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSI-ESEGCI-PDTSSYNTLINSYSKIEKVEE 367
              DVV Y++L+ G C  G++D+A KLF S+ ++E C+ P+  ++N LI    K  ++ +
Sbjct: 239 KKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTK 298

Query: 368 ALSLYGEMISMGVRPD--------NSC-----ILEAAELFRTLHNTKFELDLTVFNCLVD 414
           A+ ++ +M+  G   +          C     I EA EL++ + +  F  +   ++ L+D
Sbjct: 299 AVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILID 358

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK---- 470
           G CK   L  A  LF ++  +G  P +  Y  ++  LC EG +E+A  L  +M       
Sbjct: 359 GFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEP 418

Query: 471 --------IRECLKA------IELLHKMAKRYVKPDEITVSILEELLNK 505
                   I   LKA       EL  KM +  ++PD +T S L   L+K
Sbjct: 419 DIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSK 467



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 120/390 (30%), Positives = 185/390 (47%), Gaps = 49/390 (12%)

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
           +NI++   C+  GV +A   +  + RK  SPD+V+   LI GLC   K  EA GL  +  
Sbjct: 1   MNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEME 60

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
           A  C PN   +V C  +++DGLCKDG +++   L   MK +G   D  +Y +LI  +C  
Sbjct: 61  AAGCFPN---SVTC-TTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFC-- 114

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                  GN     EL +E       LG     +V++Y  +++ LC+     +A  +   
Sbjct: 115 -----NNGNLDRGKELFDEM------LGKGISANVVTYSCLVHGLCRLGQWKEANTVLNA 163

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M   GI PDVV Y+ LIDG C  GR   A  L   +  +G  P   +YN L++   K   
Sbjct: 164 MAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGL 223

Query: 365 VEEALSLYGEMISMGVRP-------------DNSCILEAAELFRTLHNTK--FELDLTVF 409
           V +A  +   MI  G +              D   + EA +LF ++ + +   E ++  F
Sbjct: 224 VIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTF 283

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           N L+ GLCK  RL  A ++ +K+ + G   N+VTY +++ G C++ G             
Sbjct: 284 NMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGG-CLKAG------------- 329

Query: 470 KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           KI+E   A+EL  ++      P+  T SIL
Sbjct: 330 KIKE---AMELWKQVLDLGFVPNSFTYSIL 356



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 203/469 (43%), Gaps = 64/469 (13%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +  +A    N M      P + ++  L+  L       + + L   +   G  P  V+ N
Sbjct: 153 QWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYN 212

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +L++  CK   V DAF  L  ++ K    DVVT   L++GLC +GK  EA  LF     F
Sbjct: 213 VLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSM--F 270

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           D    + PNV  +  +I GLCK+G + K   +   M  +G   +   YN L+     A  
Sbjct: 271 DNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKA-- 328

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G    A+EL ++ +    +LG +  P+  +Y  +I+  CK  +++ AK LF +M+
Sbjct: 329 -----GKIKEAMELWKQVL----DLGFV--PNSFTYSILIDGFCKMRMLNIAKGLFCEMR 377

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           + G+ P +  Y++L+   C  G ++ A+ LF  + +  C PD  S+NT+I+   K    +
Sbjct: 378 THGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQ 437

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
               L  +M+ MG+RPD                         F+ L++ L K   L  A 
Sbjct: 438 FVKELQMKMVEMGLRPDA----------------------LTFSTLINRLSKLGELDEAK 475

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAK 486
              +++   G  P+ + Y  ++ GL  +G                 +  + I LLH+MA 
Sbjct: 476 SALERMVASGFTPDALVYDSLLKGLSSKG-----------------DTTEIINLLHQMAA 518

Query: 487 RYVKPDEITVSILEELLNKDENCH-----ECMNLLPSFLSRNQEESKLT 530
           +    D   VS +   L     CH     + M LLP+F     E + ++
Sbjct: 519 KGTVLDRKIVSTILTCL-----CHSIQEVDVMELLPTFFQGTSEGASIS 562



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 122/262 (46%), Gaps = 40/262 (15%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PD++SY ++IN LCK   + +A  L L+M++ G  P+ V  ++L+DG C  GR+D+A +L
Sbjct: 31  PDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMEL 90

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
             +++ +G   D   Y TLI+ +     ++    L+ EM+  G+  +             
Sbjct: 91  LEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISAN------------- 137

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
                    +  ++CLV GLC+  + + A  +   +  +G  P+VVTYT +I GLC +G 
Sbjct: 138 ---------VVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGR 188

Query: 457 IEKAYDLLPDMEEKIRE------------------CLKAIELLHKMAKRYVKPDEITVSI 498
              A DLL  M EK  E                   + A ++L  M ++  K D +T + 
Sbjct: 189 ATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNT 248

Query: 499 LEELLNKDENCHECMNLLPSFL 520
           L + L       E + L  S  
Sbjct: 249 LMKGLCDKGKVDEALKLFNSMF 270



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLL-GAL-AGKKYYVNFICLSERLNTIGLLPDF 122
           E  L  A   F  M +    P + SFN+++ G L AG   +V    L  ++  +GL PD 
Sbjct: 398 EGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKE--LQMKMVEMGLRPDA 455

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           ++ + L+N   K+  + +A  AL R++   F+PD +    L++GL  +G  TE   L  +
Sbjct: 456 LTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQ 515

Query: 183 FVA 185
             A
Sbjct: 516 MAA 518



 Score = 43.1 bits (100), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 17/111 (15%)

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
            N ++ GLC++  +  A  L +++ R    P++V+Y  +I GLC                
Sbjct: 1   MNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLC---------------- 44

Query: 469 EKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519
            K ++  +A+ LL +M      P+ +T + L + L KD    E M LL + 
Sbjct: 45  -KAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAM 94


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 109/411 (26%), Positives = 192/411 (46%), Gaps = 31/411 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++ DAL   + M+     P + ++N LL A    + Y   + L + +   G  P+ V+ N
Sbjct: 182 QVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYN 241

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +LM+  C    V DA   L  +      P  V    +++GLC   ++ +A  L T+ +  
Sbjct: 242 VLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRE 301

Query: 187 DCRPNVIP-NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
           +C PN    NV+ Y+     LC+ G + +   L   M   G   +   YN++I   C   
Sbjct: 302 NCPPNEATFNVVIYS-----LCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQR 356

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
           N + A G  S                   C PD+++Y +++  LC       A+EL  +M
Sbjct: 357 NVDGAMGLLSKMKSYG-------------CKPDIVTYNTLLKGLCSAAQWVDAEELMDNM 403

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
              G +PD V +++LI   C  G + DA ++F  +  +GC P++ +Y+T+I+  +K  K+
Sbjct: 404 TQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKL 463

Query: 366 EEALSLYGEMISMGVRP------------DNSCILEAAELFRTLHNTKFELDLTVFNCLV 413
           ++AL L+ EM   G  P            D+  I EA +  R L ++       ++N ++
Sbjct: 464 DQALELFNEMGHKGFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAIL 523

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            GLC++ +   A ++   +   G  P+ +TY ++I GL  EG + +A +LL
Sbjct: 524 LGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELL 574



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 173/395 (43%), Gaps = 57/395 (14%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+  + N L++  C+   V DA   L  +L +  +PDVVT   L+   C    + +A  L
Sbjct: 165 PNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMEL 224

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
                A  C     PN + Y  ++DG+C +G V+    L  ++   G  P    YN++++
Sbjct: 225 IDLMRAEGC----TPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLK 280

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C A  W DA        EL  E +  N      C P+  ++  +I SLC+  L+ +A 
Sbjct: 281 GLCSAERWGDAD-------ELVTEMLREN------CPPNEATFNVVIYSLCRKGLLQQAI 327

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           +L   M   G   ++V Y+++I+G C    +D A  L   ++S GC PD  +YNTL+   
Sbjct: 328 QLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGL 387

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
               +  +A  L   M   G  PDN                        FN L+  LC+ 
Sbjct: 388 CSAAQWVDAEELMDNMTQNGCLPDN----------------------VTFNTLIGFLCQK 425

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIE 479
             +  A E+FK++P  G  PN +TY+ +I GL                  K  +  +A+E
Sbjct: 426 GLMVDAIEVFKQMPDKGCTPNSITYSTIISGLA-----------------KATKLDQALE 468

Query: 480 LLHKMAKRYVKPDEITVSILEELLNKDENCHECMN 514
           L ++M  +   PD+I   +L E LN D+   E + 
Sbjct: 469 LFNEMGHKGFNPDKI-YQLLAECLNDDDTIEEAIQ 502



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 105/415 (25%), Positives = 179/415 (43%), Gaps = 58/415 (13%)

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
           ++   D   AL  +      PD      L+R LC +G+  +A     + V   C P    
Sbjct: 81  LVHRGDLDAALRLVESSPRPPDAALANRLVRDLCRRGRPDDA-----ERVVGACGPAA-- 133

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
            V+ Y ++ DG C+ G +   R +   + G  + P+A+ YN LI   C        +G  
Sbjct: 134 TVVAYGALTDGYCRAGRLGDARRV---VGGMPVQPNAYTYNPLIHTLC-------ERGQV 183

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
             AL + ++       L   C PDV++Y  ++ + CK     +A EL   M++ G  P+ 
Sbjct: 184 RDALSVLDDM------LCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNN 237

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           V Y+ L+DG C  G +DDA +L  ++ S GC P T +YNT++      E+  +A  L  E
Sbjct: 238 VTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTE 297

Query: 375 MISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
           M+     P+ +              + +A +L   +       ++  +N +++GLC+   
Sbjct: 298 MLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRN 357

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL------ 475
           +  A  L  K+  YG +P++VTY  ++ GLC       A +L+ +M +    CL      
Sbjct: 358 VDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQN--GCLPDNVTF 415

Query: 476 --------------KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                          AIE+  +M  +   P+ IT S +   L K     + + L 
Sbjct: 416 NTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELF 470


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 120/422 (28%), Positives = 204/422 (48%), Gaps = 34/422 (8%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           SKSG  +L     FFN MI     P + ++N ++  L  +    N   L  ++  +GL P
Sbjct: 265 SKSGNGQLVRK--FFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSP 322

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVF-SPDVVTLGCLIRGLCMQGKFTEASGL 179
           D V+ N L++ + K +G  +   +L   ++ V   PD++T   LI   C   K   A   
Sbjct: 323 DVVTYNSLIDGYGK-VGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEY 381

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F++         + PNV+ Y+++ID  CK+G +     LF+DM+  G+ P+ F Y SLI 
Sbjct: 382 FSEMK----NNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLID 437

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C A       GN + A +L  + +    +L ++      +Y ++++ LCK   + +A+
Sbjct: 438 ANCKA-------GNLTEAWKLLNDMLQAGVKLNIV------TYTALLDGLCKAGRMIEAE 484

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           E+F  M   GI P+  VY++L+ GY    R++DA K+   +      PD   Y ++I  +
Sbjct: 485 EVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGH 544

Query: 360 SKIEKVEEALSLYGEMISMGVRPD---NSCIL----------EAAELFRTLHNTKFELDL 406
               K+EE   +  EM S G+  +   ++ I+          +A   F+ + +   E  +
Sbjct: 545 CSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATI 604

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             +  L+DGLCK+  +  A + F ++   G +PNV  YT +I GLC    IE A  L  +
Sbjct: 605 VTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDE 664

Query: 467 ME 468
           M+
Sbjct: 665 MQ 666



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 202/469 (43%), Gaps = 59/469 (12%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E +L ++   F  M  M  +P + ++NSL+              L   +  +G +PD ++
Sbjct: 302 EGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIIT 361

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF---- 180
            N L+NC+CK   +  AF     +      P+VVT   LI   C +G    A  LF    
Sbjct: 362 YNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMR 421

Query: 181 -----------TKFVAFDCRPN----------------VIPNVICYASIIDGLCKDGFVN 213
                      T  +  +C+                  V  N++ Y +++DGLCK G + 
Sbjct: 422 RTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMI 481

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
           +   +F  M   GI P+  VY +L+  Y  A   EDA       +++ ++    N     
Sbjct: 482 EAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDA-------MKILKQMTECN----- 529

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
              PD++ Y SII   C    +++ K +  +MKSRGI  + V+ +++ID Y   G+  DA
Sbjct: 530 -IKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDA 588

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---------- 383
              F  ++  G      +Y  LI+   K   VE A+  +  M+S+G++P+          
Sbjct: 589 LNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDG 648

Query: 384 ---NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
              N+CI  A +LF  +       D+T F  L+DG  K   L+ A  L  ++     E +
Sbjct: 649 LCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFD 708

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDMEEK--IRECLKAIELLHKMAKR 487
           +  YT ++ G    G + +A     +M EK  + E +  I LL +  KR
Sbjct: 709 LHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKR 757



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 188/430 (43%), Gaps = 66/430 (15%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           A  +F+ M +    P + ++++L+ A   +      I L   +   GLLP+  +   L++
Sbjct: 378 AFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLID 437

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
             CK   +++A+  L  +L+     ++VT   L+ GLC  G+  EA  +F   +     P
Sbjct: 438 ANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISP 497

Query: 191 N-------------------------------VIPNVICYASIIDGLCKDGFVNKVRVLF 219
           N                               + P++I Y SII G C    + + +++ 
Sbjct: 498 NQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLIL 557

Query: 220 LDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDV 279
            +MK RGI  +  +  ++I  Y  A       G +S AL   +E      ++GV     +
Sbjct: 558 EEMKSRGISANPVISTTIIDAYFKA-------GKSSDALNFFQEM----QDVGV--EATI 604

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           ++YC +I+ LCK  +V+ A + F  M S G+ P+V VY+SLIDG C    I+ A+KLF  
Sbjct: 605 VTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDE 664

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN 399
           ++  G  PD +++  LI+   K   ++EAL L   M  + +                   
Sbjct: 665 MQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAI------------------- 705

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
              E DL V+  LV G  +   L  A + F ++   G  P  V    ++      G +++
Sbjct: 706 ---EFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDE 762

Query: 460 AYDLLPDMEE 469
           A +L  +ME 
Sbjct: 763 AIELKNEMER 772



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 138/275 (50%), Gaps = 40/275 (14%)

Query: 260 LHEEFVNGNGEL---------GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
           LH    +GNG+L         G    P V +Y  +I+ LCK+  ++ ++ LF+ M+  G+
Sbjct: 261 LHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGL 320

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
            PDVV Y+SLIDGY  +G +++   LF  ++  GC+PD  +YN LIN Y K EK+  A  
Sbjct: 321 SPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFE 380

Query: 371 LYGEMISMGVRP---------DNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
            + EM + G++P         D  C    +  A +LF  +  T    +   +  L+D  C
Sbjct: 381 YFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANC 440

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM-------EEK 470
           K+  L  AW+L   + + G + N+VTYT ++ GLC  G + +A ++   M        ++
Sbjct: 441 KAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQ 500

Query: 471 IRECL-----------KAIELLHKMAKRYVKPDEI 494
           +   L            A+++L +M +  +KPD I
Sbjct: 501 VYTALVHGYIKAERMEDAMKILKQMTECNIKPDLI 535



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 126/285 (44%), Gaps = 17/285 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            + DA+     M      P +  + S++     ++       + E + + G+  + V   
Sbjct: 514 RMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVIST 573

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            +++ + K    SDA      +        +VT   LI GLC  G    A   F + ++ 
Sbjct: 574 TIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSL 633

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             +PNV      Y S+IDGLCK+  +   + LF +M+ RG+ PD   + +LI       N
Sbjct: 634 GLQPNVA----VYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGN 689

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            ++A    S   EL  EF             D+  Y S+++   +   + +A++ F +M 
Sbjct: 690 LQEALVLISRMTELAIEF-------------DLHVYTSLVSGFSQCGELHQARKFFNEMI 736

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
            +GI+P+ V+   L+  Y   G++D+A +L   +E  G I ++++
Sbjct: 737 EKGILPEEVLCICLLREYYKRGQLDEAIELKNEMERMGLITESAT 781



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 87/189 (46%), Gaps = 13/189 (6%)

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353
           L+++A E F  M++   +P     + L+      G     RK F  +   G  P   +YN
Sbjct: 234 LLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYN 293

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCI---------LEAAELFRTLHNT 400
            +I+   K   +E +  L+ +M  MG+ PD    NS I          E A LF  + + 
Sbjct: 294 VMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDV 353

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
               D+  +N L++  CK  ++  A+E F ++   G +PNVVTY+ +I   C EG ++ A
Sbjct: 354 GCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGA 413

Query: 461 YDLLPDMEE 469
             L  DM  
Sbjct: 414 IKLFVDMRR 422


>gi|297744958|emb|CBI38550.3| unnamed protein product [Vitis vinifera]
          Length = 795

 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 132/484 (27%), Positives = 218/484 (45%), Gaps = 47/484 (9%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E++ A+     M    P P + ++N+L+              L   ++ + L P+ ++  
Sbjct: 32  EISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYT 91

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ +CK   + DA      +  K   PDVVT  C++ GLC  GK  EA  +F +    
Sbjct: 92  TLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEV 151

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                V+PN   YA++ID L K+G V +  VL   M  RGI  D  VY +L+     A  
Sbjct: 152 ----GVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGM 207

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
             +A+      LE  E  V           P+ ++Y ++I+  CK   V+K + L  +M+
Sbjct: 208 ANNAEDMFQVLLE--ESLV-----------PNCVTYSALIDGHCKLGDVNKGELLLQEME 254

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            + I P+V+VYSS++DGY   G +++A  +   +     +P+   Y TLI+ Y K ++  
Sbjct: 255 EKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRG 314

Query: 367 EALSLYGEMISMGVRPDNSCI-------------LEAAELFRTLHNTKFELDLTVFNCLV 413
            AL L+ EM S G+  +N  I              EA ELF+ + +     D   +  ++
Sbjct: 315 IALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMM 374

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE--------KAYDLLP 465
           DG  K+ +   A+ + +++       +VV Y V+I GL   G  E        +   L P
Sbjct: 375 DGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESFHTGMRQLGLAP 434

Query: 466 DMEE---------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           D            K      A++LL++M    +KP+ IT +IL + L       + M+LL
Sbjct: 435 DSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLL 494

Query: 517 PSFL 520
              L
Sbjct: 495 NDML 498



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 120/406 (29%), Positives = 187/406 (46%), Gaps = 42/406 (10%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           KSG+VE  +A   F  M  +   P   S+ +L+ +L  +        L  R+   G+  D
Sbjct: 134 KSGKVE--EAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFD 191

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V    LM+   K    ++A      +L +   P+ VT   LI G C  G   +   L  
Sbjct: 192 VVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQ 251

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           +        ++ PNVI Y+SI+DG  K G +N+   +   M  R I P+ FVY +LI  Y
Sbjct: 252 EME----EKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGY 307

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
             A    D +G    AL+L +E  +   E       +     S +N+L +   +++A EL
Sbjct: 308 FKA----DQRG---IALDLFKEMKSRGLE------ENNFVIDSFVNNLKRSGRMEEADEL 354

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F DM SRG++PD V Y+S++DG+   G+  DA  +   +  +    D  +YN LIN   K
Sbjct: 355 FKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFK 414

Query: 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
           + K E   S +  M  +G+ PD++                       FN +++  CK   
Sbjct: 415 LGKYESE-SFHTGMRQLGLAPDSA----------------------TFNTMINAYCKEGN 451

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           L +A +L  ++  YG +PN +T  +++  LC  G IEK  DLL DM
Sbjct: 452 LGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDM 497



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 171/358 (47%), Gaps = 55/358 (15%)

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
            P +  +V  +  +IDG C++G +++   L   MK  G  PD   YN+L+  +C      
Sbjct: 10  HPEIRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFC------ 63

Query: 249 DAKGNTSAALELHEEFVNGNGELGVI-CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
              G+   A +L        GE+ ++   P+V++Y ++I++ CK   ++ A  ++ +M  
Sbjct: 64  -KIGDLFTAKKLM-------GEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTV 115

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           + ++PDVV Y+ +++G C  G++++A+ +F  +E  G +P+  SY TLI+S  K   V E
Sbjct: 116 KSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAE 175

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           A  L G M+  G+                        D+ V+  L+DGL K+    +A +
Sbjct: 176 AFVLQGRMVVRGI----------------------GFDVVVYTALMDGLFKAGMANNAED 213

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK----------------I 471
           +F+ L      PN VTY+ +I G C  G + K   LL +MEEK                 
Sbjct: 214 MFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYT 273

Query: 472 RECL--KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEES 527
           ++ L  +A++++ KM +R + P+      L +   K +     ++L     SR  EE+
Sbjct: 274 KKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEEN 331



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 164/375 (43%), Gaps = 52/375 (13%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GLLPD V+   +M+ F K    SDAF     +  K    DVV    LI GL   GK+   
Sbjct: 362 GLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESE 421

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
           S     F     +  + P+   + ++I+  CK+G +     L  +MK  G+ P++   N 
Sbjct: 422 S-----FHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNI 476

Query: 237 LIRVYCCAVNWE-------------------------DAKGNTSAA---LELHEEFVNGN 268
           L++  C A   E                         DA   +  A   L +H++ V   
Sbjct: 477 LVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHMHDQLV--- 533

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
              G+    D+ +Y ++I++ C+  ++ +A  +F DM  +GI+ D++ Y++LI GYC+  
Sbjct: 534 ---GMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISS 590

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC-- 386
            +  A  +   + +EG  P+  +YN L+   S    ++EA  L  +M   G+ P+ +   
Sbjct: 591 HLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYD 650

Query: 387 -----------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
                      + E  +L+  +    F      +N L+    K  ++  A EL +++   
Sbjct: 651 ILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVR 710

Query: 436 GPEPNVVTYTVMICG 450
           G  PN  TY ++ICG
Sbjct: 711 GIPPNSSTYDILICG 725



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 111/476 (23%), Positives = 198/476 (41%), Gaps = 94/476 (19%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           L+P+ V+ + L++  CK+  V+   + L  +  K   P+V+    ++ G   +G   EA 
Sbjct: 223 LVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAM 282

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCK--------------------------DGF 211
            +  K V    + N++PNV  Y ++IDG  K                          D F
Sbjct: 283 DVMRKMV----QRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSF 338

Query: 212 VNKVRV---------LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA------KGNTSA 256
           VN ++          LF DM  RG+ PD   Y S++  +  A    DA          S+
Sbjct: 339 VNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSS 398

Query: 257 ALEL-----------------HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             ++                  E F  G  +LG+   PD  ++ ++IN+ CK+  +  A 
Sbjct: 399 GFDVVAYNVLINGLFKLGKYESESFHTGMRQLGLA--PDSATFNTMINAYCKEGNLGNAL 456

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           +L  +MKS G+ P+ +  + L+   C  G I+    L   +   G  P  +++  ++++ 
Sbjct: 457 KLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDAS 516

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDL 406
           SK  + +  L ++ +++ MGV+ D S              I  A  +F+ +       D+
Sbjct: 517 SKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADI 576

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             +N L+ G C S  L+ A+ +  ++   G  PNV TY +++ GL     I++A  L+  
Sbjct: 577 ITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQ 636

Query: 467 MEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
           M+E                 R + P+  T  IL     K  N  EC+ L    +++
Sbjct: 637 MKE-----------------RGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITK 675



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 150/334 (44%), Gaps = 30/334 (8%)

Query: 52  KLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSE 111
           KL KY SE+  +G  +L  A             P   +FN+++ A   +    N + L  
Sbjct: 414 KLGKYESESFHTGMRQLGLA-------------PDSATFNTMINAYCKEGNLGNALKLLN 460

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
            + + GL P+ ++ NIL+   C    +      L  +L   F P   T   ++       
Sbjct: 461 EMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSR 520

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
           +      +  + V    +     ++  Y ++I   C+ G + +  ++F DM G+GI  D 
Sbjct: 521 RADVILHMHDQLVGMGVK----LDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADI 576

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
             YN+LI  YC + + +        A  +H + +           P+V +Y  ++  L  
Sbjct: 577 ITYNALIHGYCISSHLKK-------AFAVHSQMLTEG------VSPNVETYNILLGGLSA 623

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
             L+ +A  L   MK RG++P+   Y  L+ G+  +G + +  KL+  + ++G +P T +
Sbjct: 624 ARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRT 683

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
           YN LI+ ++K +K+ +A  L  EM   G+ P++S
Sbjct: 684 YNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSS 717



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 134/302 (44%), Gaps = 41/302 (13%)

Query: 63  SGEVE-----LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIG 117
           +GE+E     LND L     ++   PTP   +  ++L A +  +     + + ++L  +G
Sbjct: 484 AGEIEKTMDLLNDML-----VMGFHPTP--TTHKAVLDASSKSRRADVILHMHDQLVGMG 536

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           +  D  + N L++ FC++  +  A +    ++ K    D++T   LI G C+     +A 
Sbjct: 537 VKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAF 596

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            + ++ +       V PNV  Y  ++ GL     + +   L   MK RG+ P+A  Y+ L
Sbjct: 597 AVHSQMLT----EGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDIL 652

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
                  V+     GN    ++L+ E +      G +  P   +Y  +I+   K   + +
Sbjct: 653 -------VSGHGKIGNMKECVKLYCEMITK----GFV--PKTRTYNVLISCFAKGKKMSQ 699

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR------------IDDARKLFVSIESEGC 345
           AKEL  +M+ RGI P+   Y  LI G+  + +              +A++LF  +  +G 
Sbjct: 700 AKELMQEMQVRGIPPNSSTYDILICGWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGF 759

Query: 346 IP 347
           IP
Sbjct: 760 IP 761


>gi|147841407|emb|CAN66681.1| hypothetical protein VITISV_005087 [Vitis vinifera]
          Length = 882

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 132/484 (27%), Positives = 218/484 (45%), Gaps = 47/484 (9%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E++ A+     M    P P + ++N+L+              L   ++ + L P+ ++  
Sbjct: 32  EISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYT 91

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ +CK   + DA      +  K   PDVVT  C++ GLC  GK  EA  +F +    
Sbjct: 92  TLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEV 151

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                V+PN   YA++ID L K+G V +  VL   M  RGI  D  VY +L+     A  
Sbjct: 152 ----GVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGM 207

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
             +A+      LE  E  V           P+ ++Y ++I+  CK   V+K + L  +M+
Sbjct: 208 ANNAEDMFQVLLE--ESLV-----------PNCVTYSALIDGHCKLGDVNKGELLLQEME 254

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            + I P+V+VYSS++DGY   G +++A  +   +     +P+   Y TLI+ Y K ++  
Sbjct: 255 EKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRG 314

Query: 367 EALSLYGEMISMGVRPDNSCI-------------LEAAELFRTLHNTKFELDLTVFNCLV 413
            AL L+ EM S G+  +N  I              EA ELF+ + +     D   +  ++
Sbjct: 315 IALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMM 374

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE--------KAYDLLP 465
           DG  K+ +   A+ + +++       +VV Y V+I GL   G  E        +   L P
Sbjct: 375 DGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESFHTGMRQLGLAP 434

Query: 466 DMEE---------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           D            K      A++LL++M    +KP+ IT +IL + L       + M+LL
Sbjct: 435 DSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLL 494

Query: 517 PSFL 520
              L
Sbjct: 495 NDML 498



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 120/406 (29%), Positives = 187/406 (46%), Gaps = 42/406 (10%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           KSG+VE  +A   F  M  +   P   S+ +L+ +L  +        L  R+   G+  D
Sbjct: 134 KSGKVE--EAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFD 191

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V    LM+   K    ++A      +L +   P+ VT   LI G C  G   +   L  
Sbjct: 192 VVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQ 251

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           +        ++ PNVI Y+SI+DG  K G +N+   +   M  R I P+ FVY +LI  Y
Sbjct: 252 EME----EKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGY 307

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
             A    D +G    AL+L +E  +   E       +     S +N+L +   +++A EL
Sbjct: 308 FKA----DQRG---IALDLFKEMKSRGLE------ENNFVIDSFVNNLKRSGRMEEADEL 354

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F DM SRG++PD V Y+S++DG+   G+  DA  +   +  +    D  +YN LIN   K
Sbjct: 355 FKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFK 414

Query: 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
           + K E   S +  M  +G+ PD++                       FN +++  CK   
Sbjct: 415 LGKYESE-SFHTGMRQLGLAPDSA----------------------TFNTMINAYCKEGN 451

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           L +A +L  ++  YG +PN +T  +++  LC  G IEK  DLL DM
Sbjct: 452 LGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDM 497



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 171/358 (47%), Gaps = 55/358 (15%)

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
            P +  +V  +  +IDG C++G +++   L   MK  G  PD   YN+L+  +C      
Sbjct: 10  HPEIRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFC------ 63

Query: 249 DAKGNTSAALELHEEFVNGNGELGVI-CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
              G+   A +L        GE+ ++   P+V++Y ++I++ CK   ++ A  ++ +M  
Sbjct: 64  -KIGDLFTAKKLM-------GEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTV 115

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           + ++PDVV Y+ +++G C  G++++A+ +F  +E  G +P+  SY TLI+S  K   V E
Sbjct: 116 KSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAE 175

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           A  L G M+  G+                        D+ V+  L+DGL K+    +A +
Sbjct: 176 AFVLQGRMVVRGIG----------------------FDVVVYTALMDGLFKAGMANNAED 213

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK----------------I 471
           +F+ L      PN VTY+ +I G C  G + K   LL +MEEK                 
Sbjct: 214 MFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYT 273

Query: 472 RECL--KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEES 527
           ++ L  +A++++ KM +R + P+      L +   K +     ++L     SR  EE+
Sbjct: 274 KKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEEN 331



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 163/375 (43%), Gaps = 52/375 (13%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GLLPD V+   +M+ F K    SDAF     +  K    DVV    LI GL   GK+   
Sbjct: 362 GLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESE 421

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
           S     F     +  + P+   + ++I+  CK+G +     L  +MK  G+ P++   N 
Sbjct: 422 S-----FHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNI 476

Query: 237 LIRVYCCAVNWE-------------------------DAKGNTSAA---LELHEEFVNGN 268
           L++  C A   E                         DA   +  A   L  H++ V   
Sbjct: 477 LVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHXHDQLV--- 533

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
              G+    D+ +Y ++I++ C+  ++ +A  +F DM  +GI+ D++ Y++LI GYC+  
Sbjct: 534 ---GMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISS 590

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC-- 386
            +  A  +   + +EG  P+  +YN L+   S    ++EA  L  +M   G+ P+ +   
Sbjct: 591 HLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYD 650

Query: 387 -----------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
                      + E  +L+  +    F      +N L+    K  ++  A EL +++   
Sbjct: 651 ILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVR 710

Query: 436 GPEPNVVTYTVMICG 450
           G  PN  TY ++ICG
Sbjct: 711 GIPPNSSTYDILICG 725



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 111/476 (23%), Positives = 197/476 (41%), Gaps = 94/476 (19%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           L+P+ V+ + L++  CK+  V+   + L  +  K   P+V+    ++ G   +G   EA 
Sbjct: 223 LVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAM 282

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCK--------------------------DGF 211
            +  K V    + N++PNV  Y ++IDG  K                          D F
Sbjct: 283 DVMRKMV----QRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSF 338

Query: 212 VNKVRV---------LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA------KGNTSA 256
           VN ++          LF DM  RG+ PD   Y S++  +  A    DA          S+
Sbjct: 339 VNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSS 398

Query: 257 ALEL-----------------HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             ++                  E F  G  +LG+   PD  ++ ++IN+ CK+  +  A 
Sbjct: 399 GFDVVAYNVLINGLFKLGKYESESFHTGMRQLGLA--PDSATFNTMINAYCKEGNLGNAL 456

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           +L  +MKS G+ P+ +  + L+   C  G I+    L   +   G  P  +++  ++++ 
Sbjct: 457 KLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDAS 516

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDL 406
           SK  + +  L  + +++ MGV+ D S              I  A  +F+ +       D+
Sbjct: 517 SKSRRADVILHXHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADI 576

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             +N L+ G C S  L+ A+ +  ++   G  PNV TY +++ GL     I++A  L+  
Sbjct: 577 ITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQ 636

Query: 467 MEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
           M+E                 R + P+  T  IL     K  N  EC+ L    +++
Sbjct: 637 MKE-----------------RGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITK 675



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 149/334 (44%), Gaps = 30/334 (8%)

Query: 52  KLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSE 111
           KL KY SE+  +G  +L  A             P   +FN+++ A   +    N + L  
Sbjct: 414 KLGKYESESFHTGMRQLGLA-------------PDSATFNTMINAYCKEGNLGNALKLLN 460

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
            + + GL P+ ++ NIL+   C    +      L  +L   F P   T   ++       
Sbjct: 461 EMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSR 520

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
           +         + V    +     ++  Y ++I   C+ G + +  ++F DM G+GI  D 
Sbjct: 521 RADVILHXHDQLVGMGVK----LDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADI 576

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
             YN+LI  YC + + +        A  +H + +           P+V +Y  ++  L  
Sbjct: 577 ITYNALIHGYCISSHLK-------KAFAVHSQMLTEG------VSPNVETYNILLGGLSA 623

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
             L+ +A  L   MK RG++P+   Y  L+ G+  +G + +  KL+  + ++G +P T +
Sbjct: 624 ARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRT 683

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
           YN LI+ ++K +K+ +A  L  EM   G+ P++S
Sbjct: 684 YNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSS 717



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 133/302 (44%), Gaps = 41/302 (13%)

Query: 63  SGEVE-----LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIG 117
           +GE+E     LND L     ++   PTP   +  ++L A +  +     +   ++L  +G
Sbjct: 484 AGEIEKTMDLLNDML-----VMGFHPTP--TTHKAVLDASSKSRRADVILHXHDQLVGMG 536

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           +  D  + N L++ FC++  +  A +    ++ K    D++T   LI G C+     +A 
Sbjct: 537 VKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAF 596

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            + ++ +       V PNV  Y  ++ GL     + +   L   MK RG+ P+A  Y+ L
Sbjct: 597 AVHSQMLT----EGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDIL 652

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
                  V+     GN    ++L+ E +      G +  P   +Y  +I+   K   + +
Sbjct: 653 -------VSGHGKIGNMKECVKLYCEMITK----GFV--PKTRTYNVLISCFAKGKKMSQ 699

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR------------IDDARKLFVSIESEGC 345
           AKEL  +M+ RGI P+   Y  LI G+  + +              +A++LF  +  +G 
Sbjct: 700 AKELMQEMQVRGIPPNSSTYDILICGWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGF 759

Query: 346 IP 347
           IP
Sbjct: 760 IP 761


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 123/461 (26%), Positives = 195/461 (42%), Gaps = 79/461 (17%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E +  DA+ F N M     +P   ++N++L AL  K    +   L   + + GLLP+  +
Sbjct: 221 ENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNT 280

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            NIL+  +CKM  + +A   +  + +    PDV T   LI GLC +G+  EA  L  +  
Sbjct: 281 YNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEME 340

Query: 185 AFDCRPNVI-------------------------------PNVICYASIIDGLCKDGFVN 213
                P+V+                               PN + +  ++   CK+G ++
Sbjct: 341 NLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMD 400

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA--KGNTSAALELHEEFVNGNGEL 271
                   M+  G  PD   YN+LI  YC A N  +A    +      +  + V  N  L
Sbjct: 401 DASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTIL 460

Query: 272 GVICHP--------------------DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
             +C                      D +SY ++I    KD  VD+A +L+ +MK + II
Sbjct: 461 RTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEII 520

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           P  V Y+ +I G C  G+ + A      +   G +PD ++YNT+++ Y +   VE+A   
Sbjct: 521 PSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQF 580

Query: 372 YGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNC--LVDGLCKSWRLRSAWELF 429
           + +M+    +PD                        VF C  L+ GLC    L  A +LF
Sbjct: 581 HNKMVENSFKPD------------------------VFTCNILLRGLCMEGMLEKALKLF 616

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
                 G   + VTY  +I  LC EG ++ A++LL +MEEK
Sbjct: 617 NTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEK 657



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 130/510 (25%), Positives = 217/510 (42%), Gaps = 86/510 (16%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKM---IGVSD 140
           +P     ++ +GA        +   + +++  + L P+ ++ N L+N   +      VS 
Sbjct: 132 SPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSF 191

Query: 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200
           +  A    ++    P+V T   +I G C++ KF +A         ++C P+ +     Y 
Sbjct: 192 SREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNV----TYN 247

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL 260
           +I+D LCK G +   R L +DMK RG+ P+   YN L+  YC  + W     N       
Sbjct: 248 TILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYC-KMGWLKEAANVI----- 301

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
             E +  N  L     PDV +Y  +IN LC +  +++A +L  +M++  ++PDVV Y++L
Sbjct: 302 --ELMTQNNLL-----PDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTL 354

Query: 321 IDG-----------------------------------YCLMGRIDDARKLFVSIESEGC 345
           I+G                                   YC  G++DDA      +E  G 
Sbjct: 355 INGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGF 414

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---SCIL----------EAAE 392
            PD  +YNTLIN Y K   + EA     EM    ++ D+   + IL          EA +
Sbjct: 415 SPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYK 474

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
           L  +     + +D   +  L+ G  K   +  A +L+ ++      P+ VTY  +I GLC
Sbjct: 475 LLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLC 534

Query: 453 IEGGIEKAYD---------LLPD-------MEEKIRE--CLKAIELLHKMAKRYVKPDEI 494
             G  E+A           LLPD       +    RE    KA +  +KM +   KPD  
Sbjct: 535 QCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVF 594

Query: 495 TVSILEELLNKDENCHECMNLLPSFLSRNQ 524
           T +IL   L  +    + + L  +++S+ +
Sbjct: 595 TCNILLRGLCMEGMLEKALKLFNTWVSKGK 624



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 181/408 (44%), Gaps = 64/408 (15%)

Query: 141 AFVALGR-------ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
            F+A  R       ILR + SP    L   I      G+   A  +F K      RPN++
Sbjct: 113 GFIATDRRHDLHLSILR-LTSPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLL 171

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
                  S++        V+  R  F D    GI P+   +N +I  YC    ++DA   
Sbjct: 172 TCNTLLNSLVRYPSSHS-VSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAV-- 228

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
                    EF+N  G+    C PD ++Y +I+++LCK   +  A++L +DMKSRG++P+
Sbjct: 229 ---------EFLNVMGKYN--CSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPN 277

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
              Y+ L+ GYC MG + +A  +   +     +PD  +YN LIN      ++EEA  L  
Sbjct: 278 RNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRD 337

Query: 374 EMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW-RLRSAWELFKKL 432
           EM ++ + P                      D+  +N L++G C  W ++  A++L +++
Sbjct: 338 EMENLKLLP----------------------DVVSYNTLING-CLEWSKISEAFKLLEEM 374

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIREC 474
              G +PN VT+ +M+   C EG ++ A + +  MEE                  K    
Sbjct: 375 SEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNM 434

Query: 475 LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
            +A   + +M ++ +K D +T++ +   L +++   E   LL S   R
Sbjct: 435 GEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKR 482



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 166/389 (42%), Gaps = 51/389 (13%)

Query: 101 KYYVNFICLSERLNTI------GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFS 154
           K+Y     + +  NTI      G  PD V+ N L+N +CK   + +AF  +  + RK   
Sbjct: 391 KWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMK 450

Query: 155 PDVVTLGCLIRGLCMQGKFTEA---------SGLFTKFVAFDC----------------- 188
            D VTL  ++R LC + K  EA          G F   V++                   
Sbjct: 451 MDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKL 510

Query: 189 -----RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
                   +IP+ + Y  II GLC+ G   +      ++   G+ PD   YN+++  YC 
Sbjct: 511 WDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYC- 569

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                  +G+   A + H + V  +        PDV +   ++  LC + +++KA +LF 
Sbjct: 570 ------REGDVEKAFQFHNKMVENS------FKPDVFTCNILLRGLCMEGMLEKALKLFN 617

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
              S+G   D V Y++LI   C  GR+DDA  L   +E +   PD  +YN +I + +   
Sbjct: 618 TWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSG 677

Query: 364 KVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTV-FNCLVDGLCKSWRL 422
           ++ EA     +M+  G  P     L+  E   T   ++     +V ++  +  LC   + 
Sbjct: 678 RIREAEEFMSKMLEKGXLPXQVLQLDXNETVVTSETSEESDSSSVAYSEWIKELCTEGKY 737

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGL 451
           + A  +F +  + G   +  TY  ++ GL
Sbjct: 738 KDAMRIFGESKQKGITVDKSTYINLMDGL 766



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 130/304 (42%), Gaps = 33/304 (10%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G V+   AL  ++ M   +  P   ++N ++G L         I     L   GLLPD
Sbjct: 500 KDGNVD--RALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPD 557

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             + N +++ +C+   V  AF    +++   F PDV T   L+RGLCM+G   +A  LF 
Sbjct: 558 ETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFN 617

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
            +V+   +   I + + Y ++I  LCK+G ++    L  +M+ + + PD + YN++I   
Sbjct: 618 TWVS---KGKAI-DTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITAL 673

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL-VDKAKE 300
                        S  +   EEF++   E G                L   VL +D  + 
Sbjct: 674 T-----------DSGRIREAEEFMSKMLEKG---------------XLPXQVLQLDXNET 707

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           +     S       V YS  I   C  G+  DA ++F   + +G   D S+Y  L++   
Sbjct: 708 VVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQKGITVDKSTYINLMDGLI 767

Query: 361 KIEK 364
           K  K
Sbjct: 768 KRRK 771


>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
 gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
          Length = 845

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 119/452 (26%), Positives = 197/452 (43%), Gaps = 57/452 (12%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P M  + +L+  L   +     + +  R+  +G  P   +   +++  C+     +A   
Sbjct: 252 PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEM 311

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           L  +  K  +P VVT   +I   C +G+ ++A  +        C+PNV      Y +++ 
Sbjct: 312 LQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVW----TYNALVQ 367

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           G C +G V+K   L   M+  G+ PDA  YN LIR  C         G+  +A  L    
Sbjct: 368 GFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCI-------DGHIESAFRLLR-L 419

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           + G+G +      D  +Y ++IN+LCKD   D+A  LF  +++RGI P+ V ++SLI+G 
Sbjct: 420 MEGDGLIA-----DQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGL 474

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           C  G+ D A K    + S GC PDT +Y++ I    K++  +E LS  GEM+   V+P  
Sbjct: 475 CKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKP-- 532

Query: 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
           S +     + + L    + L    +  +V   C                     P+VVTY
Sbjct: 533 STVNYTIVIHKLLKERNYGLVARTWGEMVSSGCN--------------------PDVVTY 572

Query: 445 TVMICGLCIEGGIEK------------------AYDLLPDMEEKIRECLKAIELLHKMAK 486
           T  +   CIEG + +                  AY+ L D    I +   A+ +L +M  
Sbjct: 573 TTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTS 632

Query: 487 RYVKPDEITVSILEELLNKDENCHECMNLLPS 518
               P++ T  IL   L +     + + L P+
Sbjct: 633 VASVPNQFTYFILLRHLVRMRLVEDVLPLTPA 664



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 115/466 (24%), Positives = 198/466 (42%), Gaps = 80/466 (17%)

Query: 71  ALCFFNYMI-HMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           AL  F +M  H  P P  P++N+++ +L  +      +     +   G  PD  + N L+
Sbjct: 136 ALRLFAHMHRHAPPAPTAPTYNAVIRSLCRRADLARALRYLSLMVRSGWRPDAYTFNSLI 195

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
             +C+   V  A     ++  + F+ DVV+   LI GLC  G+  EA  LF +    D  
Sbjct: 196 VGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMDQPDMH 255

Query: 190 PNVI---------------------------PNVICYASIIDGLCKDGFVNKVRVLFLDM 222
                                          P+   YA+++D  C++    +   +  +M
Sbjct: 256 MYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEM 315

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
             +G+ P      ++I  YC        +G  S AL +  E +   G     C P+V +Y
Sbjct: 316 FEKGLAPCVVTCTAVINAYC-------KEGRMSDALRVL-ELMKLRG-----CKPNVWTY 362

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
            +++   C +  V KA  L   M++ G+ PD V Y+ LI G C+ G I+ A +L   +E 
Sbjct: 363 NALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEG 422

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF 402
           +G I D  +YN LIN+  K  + ++A SL+  + + G++P+                   
Sbjct: 423 DGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNA------------------ 464

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
                 FN L++GLCKS +   AW+  +K+   G  P+  TY+  I  LC          
Sbjct: 465 ----VTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLC---------- 510

Query: 463 LLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDEN 508
                  K++   + +  + +M ++ VKP  +  +I+   L K+ N
Sbjct: 511 -------KMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERN 549



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 182/411 (44%), Gaps = 24/411 (5%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N+   E  ++DAL     M      P + ++N+L+     +      + L  ++   G+ 
Sbjct: 332 NAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVN 391

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V+ N+L+   C    +  AF  L  +       D  T   LI  LC  G+  +A  L
Sbjct: 392 PDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSL 451

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F    + + R  + PN + + S+I+GLCK G  +        M   G  PD + Y+S I 
Sbjct: 452 FD---SLETR-GIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIE 507

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGE-LGVICHPDVLSYCSIINSLCKDVLVDKA 298
             C        KG+        +E ++  GE L     P  ++Y  +I+ L K+      
Sbjct: 508 HLC------KMKGS--------QEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLV 553

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
              + +M S G  PDVV Y++ +  YC+ GR+++A  + + +   G   DT +YNTL++ 
Sbjct: 554 ARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDG 613

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
           ++ I + + A+S+  +M S+   P+         L R  H  +  L   V      G+ K
Sbjct: 614 HASIGQTDHAVSILKQMTSVASVPNQFTYF---ILLR--HLVRMRLVEDVLPLTPAGVWK 668

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           +  L   + LF  + +    PN  TY+ ++ G   +G  E+A  L+  M+E
Sbjct: 669 AIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKE 719



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 86/393 (21%), Positives = 159/393 (40%), Gaps = 47/393 (11%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P   +FNSL+  L             E++ + G  PD  + +  +   CKM G  +    
Sbjct: 462 PNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSF 521

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           +G +L+K   P  V    +I  L  +  +   +  + + V+  C P+V+     Y + + 
Sbjct: 522 IGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVV----TYTTSMR 577

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
             C +G +N+   + ++M   G+  D   YN+L+       +   + G T  A+ + ++ 
Sbjct: 578 AYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLM-------DGHASIGQTDHAVSILKQM 630

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVD-----------KAKEL------FLDMKS 307
            +      V   P+  +Y  ++  L +  LV+           KA EL      F  MK 
Sbjct: 631 TS------VASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKK 684

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
              +P+   YSS+++G+   GR ++A  L   ++ +    +   Y  L+  + K ++  +
Sbjct: 685 NEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLD 744

Query: 368 ALSLYGEMISMGVRPD--------NSCILE-----AAELFRTLHNTKFELDLTVFNCLVD 414
           A  L   MI  G  P         +  I E     A E+F       +  D  V+  ++D
Sbjct: 745 AWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIID 804

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
           GL K      + E+   L R    P+  TY ++
Sbjct: 805 GLIKKGHSDISREMIIMLERMNCRPSHQTYAML 837


>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 675

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 119/449 (26%), Positives = 201/449 (44%), Gaps = 56/449 (12%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L++A      M+     P + ++N+++  L       +   L + +    L+PD VS N
Sbjct: 275 QLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYN 334

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+  + ++  + +AF+    +  +   P VVT   LI GLC  G    A  L  + +  
Sbjct: 335 TLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKH 394

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
              P+  P+V  +  ++ G CK G +   + LF +M  RG+ PD F Y          + 
Sbjct: 395 G--PD--PDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAY-------ITRIV 443

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            E   G+ S A  + EE       L     PD+++Y   I+ L K   + +A EL   M 
Sbjct: 444 GELKLGDPSKAFGMQEEM------LARGFPPDLITYNVFIDGLHKLGNLKEASELVKKML 497

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
             G++PD V Y+S+I  + + G +  AR +F+ + S+G  P   +Y  LI+SY+   +++
Sbjct: 498 YNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLK 557

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
            A+  + EM   GV P+                      +  +N L++GLCK  ++  A+
Sbjct: 558 LAILHFFEMHEKGVHPN----------------------VITYNALINGLCKVRKMDQAY 595

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAK 486
           + F ++   G  PN  TYT++I   C  G  ++A  L  DM +                 
Sbjct: 596 KFFTEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLD----------------- 638

Query: 487 RYVKPDEITVSILEELLNKDENCHECMNL 515
           R ++PD  T S L + LNKD   H   +L
Sbjct: 639 REIQPDSCTHSALLKHLNKDYKSHVVRHL 667



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 158/345 (45%), Gaps = 53/345 (15%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P V+ Y +++D  CK G V +   L L M+  G  P+   YN L       VN     G 
Sbjct: 188 PTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVL-------VNGLSHSGE 240

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
              A EL +E +    E+         +Y  +I   C+   +D+A  L  +M SRG +P 
Sbjct: 241 LEQAKELIQEMLRLGLEV------SAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPT 294

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           +V Y++++ G C  GR+ DARKL   + ++  +PD  SYNTLI  Y+++  + EA  L+ 
Sbjct: 295 LVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFA 354

Query: 374 EMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
           E+   G+ P                       +  +N L+DGLC+   L  A  L  ++ 
Sbjct: 355 ELRFRGLVP----------------------SVVTYNTLIDGLCRMGDLDVAMRLKDEMI 392

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM------------------EEKIRECL 475
           ++GP+P+V T+T+++ G C  G +  A +L  +M                  E K+ +  
Sbjct: 393 KHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPS 452

Query: 476 KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
           KA  +  +M  R   PD IT ++  + L+K  N  E   L+   L
Sbjct: 453 KAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKML 497


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 108/429 (25%), Positives = 198/429 (46%), Gaps = 52/429 (12%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           R+   G      S N L++   K     +       ++++   P++ T    I GLC  G
Sbjct: 155 RVQDYGFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNIFINGLCKAG 214

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV---RVLFLDMKGRGIY 228
           K  +A  +     A+   PN++     Y ++IDG CK G   K+     +  +M    I 
Sbjct: 215 KLNKAEDVIEDIKAWGFSPNIV----TYNTLIDGHCKKGSAGKMYRADAILKEMLANKIC 270

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           P+   +N+LI  +C   N   AK   +A  E+  + +           P++++Y S+IN 
Sbjct: 271 PNEITFNTLIDGFCKDENVLAAK---NAFEEMQRQGL----------KPNIVTYNSLING 317

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           L  +  +D+A  L+  M   G+ P++V +++LI+G+C    I +ARKLF  I  +  +P+
Sbjct: 318 LSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPN 377

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFR 395
             ++NT+I+++ K   +EE  +L+  M+  G+ P+             N  +  A +L  
Sbjct: 378 AITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLN 437

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            + N + + D+  +N L+ G CK      A +L  ++   G +PN VTY  ++ G C+EG
Sbjct: 438 EMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEG 497

Query: 456 GIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVS 497
            ++ A  +   ME+                  K  +   A  LL++M ++ + P+  T  
Sbjct: 498 NLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTYD 557

Query: 498 ILE-ELLNK 505
           ++  E+L K
Sbjct: 558 VVRLEMLEK 566



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 128/281 (45%), Gaps = 17/281 (6%)

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           F  M      P + ++NSL+  L+        I L +++  +GL P+ V+ N L+N FCK
Sbjct: 296 FEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCK 355

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
              + +A      I  +   P+ +T   +I   C  G   E   L    +       + P
Sbjct: 356 KKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSML----DEGIFP 411

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           NV  Y  +I GLC++  V   + L  +M+   +  D   YN LI  +C         G  
Sbjct: 412 NVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWC-------KDGEP 464

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
           S A +L  E +N      V   P+ ++Y ++++  C +  +  A ++   M+  G   +V
Sbjct: 465 SKAEKLLGEMLN------VGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANV 518

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           V Y+ LI G+C  G+++DA +L   +  +G  P+ ++Y+ +
Sbjct: 519 VTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTYDVV 559



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 124/265 (46%), Gaps = 22/265 (8%)

Query: 53  LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSER 112
           L+  LS N K     L++A+  ++ M+ +   P + +FN+L+     KK       L + 
Sbjct: 314 LINGLSNNGK-----LDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDD 368

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +    L+P+ ++ N +++ FCK   + + F     +L +   P+V T  CLI GLC    
Sbjct: 369 IAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQN 428

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
              A  L  +   ++ +     +V+ Y  +I G CKDG  +K   L  +M   G+ P+  
Sbjct: 429 VRAAKKLLNEMENYELK----ADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHV 484

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            YN+L+  YC        +GN  AAL++  + +   G+       +V++Y  +I   CK 
Sbjct: 485 TYNTLMDGYCM-------EGNLKAALKVRTQ-MEKEGK-----RANVVTYNVLIKGFCKT 531

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVY 317
             ++ A  L  +M  +G+ P+   Y
Sbjct: 532 GKLEDANRLLNEMLEKGLNPNRTTY 556



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 87/202 (43%), Gaps = 36/202 (17%)

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
           + ++   L+  Y     I  A ++F  ++  G     +S N L+++  K  +  E   +Y
Sbjct: 129 NALITDMLVLAYVTNLEIHSACEVFRRVQDYGFKLSLNSCNPLLSALVKGNETGEMQYVY 188

Query: 373 GEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
            EMI   ++P+                      LT FN  ++GLCK+ +L  A ++ + +
Sbjct: 189 KEMIKRRIQPN----------------------LTTFNIFINGLCKAGKLNKAEDVIEDI 226

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPD 492
             +G  PN+VTY  +I G C +G   K Y              +A  +L +M    + P+
Sbjct: 227 KAWGFSPNIVTYNTLIDGHCKKGSAGKMY--------------RADAILKEMLANKICPN 272

Query: 493 EITVSILEELLNKDENCHECMN 514
           EIT + L +   KDEN     N
Sbjct: 273 EITFNTLIDGFCKDENVLAAKN 294


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 134/551 (24%), Positives = 238/551 (43%), Gaps = 92/551 (16%)

Query: 22  RNSKKPISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHM 81
           RN+ K + +++E  P+ L S        +T L+K L+ + K+G+   N++L F   +++ 
Sbjct: 45  RNAPK-VGVSAEARPAHLQSYDF----RETHLMKLLNRSCKAGK--FNESLYFLECLVNK 97

Query: 82  QPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL-----PDFVSLNILMNCFCKMI 136
             TP +     L+      K + NF  + +    + +L     PD  + N +++ FCK+ 
Sbjct: 98  GYTPDVILCTKLI------KGFFNFKNIEKASRVMEILESHTEPDVFAYNAVISGFCKVN 151

Query: 137 GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI--- 193
            +  A   L R+  + F PD+VT   +I  LC + K   A  +  + +  +C P VI   
Sbjct: 152 RIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYT 211

Query: 194 ----------------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225
                                       P++  Y +II G+CK+G V +   L   +  +
Sbjct: 212 ILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSK 271

Query: 226 GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSI 285
           G  PD   YN L+R +     W++ +   +      E F  G       C P+ ++Y  +
Sbjct: 272 GCKPDVISYNILLRAFLNQGKWDEGEKLVA------EMFSRG-------CEPNKVTYSIL 318

Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
           I+SLC+   +D+A  +   M  + + PD   Y  LI   C  GR+D A  +   + S GC
Sbjct: 319 ISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGC 378

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCIL---------EAAE 392
           +PD  +YNT++ +  K     +AL ++ ++  MG  P+    N+ I           A  
Sbjct: 379 LPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALG 438

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
           +   + +   + D   +N L+  LC+   +  A  L   + + G  P V++Y +++ GLC
Sbjct: 439 MVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLC 498

Query: 453 IEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHEC 512
                            K+R    AI +  +M ++  +P+E T  +L E +       E 
Sbjct: 499 -----------------KVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEA 541

Query: 513 MNLLPSFLSRN 523
           M L  S  SR+
Sbjct: 542 MELANSLFSRD 552



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 151/302 (50%), Gaps = 19/302 (6%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + S+N LL A   +  +     L   + + G  P+ V+ +IL++  C+   + +A   
Sbjct: 275 PDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISV 334

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           L  ++ K  +PD  +   LI  LC +G+   A G+    ++  C    +P+++ Y +I+ 
Sbjct: 335 LKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGC----LPDIVNYNTILA 390

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR-VYCCAVNWEDAKGNTSAALELHEE 263
            LCK+G  N+   +F  ++G G  P+   YN++I  ++ C        G+ S AL +   
Sbjct: 391 ALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSC--------GDRSRALGMVPA 442

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
            ++     GV   PD ++Y S+I+ LC+D LV++A  L  DM+  G  P V+ Y+ ++ G
Sbjct: 443 MISK----GV--DPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLG 496

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            C + RIDDA  +F  +  +GC P+ ++Y  LI          EA+ L   + S  V   
Sbjct: 497 LCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSLFSRDVISQ 556

Query: 384 NS 385
           +S
Sbjct: 557 DS 558



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 115/266 (43%), Gaps = 45/266 (16%)

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           ++N  CK    +++      + ++G  PDV++ + LI G+     I+ A ++   +ES  
Sbjct: 74  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESH- 132

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL 404
             PD  +YN +I+ + K+ ++E A  +   M + G  P                      
Sbjct: 133 TEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLP---------------------- 170

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD-- 462
           D+  +N ++  LC   +L  A ++  +L      P V+TYT++I    +EGGI +A    
Sbjct: 171 DIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLL 230

Query: 463 -------LLPDM-----------EEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLN 504
                  LLPDM           +E + E  +A EL+  +  +  KPD I+ +IL     
Sbjct: 231 EEMLARGLLPDMYTYNAIIRGMCKEGMVE--RAAELITSLTSKGCKPDVISYNILLRAFL 288

Query: 505 KDENCHECMNLLPSFLSRNQEESKLT 530
                 E   L+    SR  E +K+T
Sbjct: 289 NQGKWDEGEKLVAEMFSRGCEPNKVT 314


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 133/496 (26%), Positives = 214/496 (43%), Gaps = 69/496 (13%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E ++ DAL + N M      P   S+N++L AL  ++       L   + + GL P+  +
Sbjct: 226 ESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHT 285

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N+L+  +C++  + +A   +  + R    P V T   L+ G C  GK  EA  +  +  
Sbjct: 286 YNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEME 345

Query: 185 AFDCRPNVIPNVICYASIIDG-----------------------------------LCKD 209
               + NV+P+V+ Y ++IDG                                   +CK 
Sbjct: 346 ----KMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKK 401

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
           G + +       M+  G+ PD   YN+LI  YC A       G    A  + +E  +   
Sbjct: 402 GNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKA-------GKMGKAFRMMDEMTSKGL 454

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
           ++      D  +  +I++ LC +  +D+A  L      RG I D V Y  LI GY    +
Sbjct: 455 KI------DTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEK 508

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS---- 385
            D A  L+  ++    +P T +YN++I    +  KV++A+    EM+  G+ PD +    
Sbjct: 509 GDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNI 568

Query: 386 -----CILEAAELFRTLHNTK----FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
                C+    E     HN      F+ D+   N L+ GLC+   L  A +LF  L   G
Sbjct: 569 IIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKG 628

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI----RECLKAIELLHKMAKRYVKPD 492
            + +VVTY  +I  LC EG  E AYDLL +ME K     +   K I      A R  + +
Sbjct: 629 KDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAE 688

Query: 493 EITVSILEELLNKDEN 508
           E T+ ++E  +  D+N
Sbjct: 689 EFTLKMVESGIVHDQN 704



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 100/434 (23%), Positives = 197/434 (45%), Gaps = 27/434 (6%)

Query: 19  SSLRNSKKPISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYM 78
           S  R+S +  SL  E +   +  N+V+       +LK++ +        + +A    + M
Sbjct: 364 SQWRDSSEVYSLIEEMDKKGVKCNAVTY----NIILKWMCKKGN-----MTEATTTLDKM 414

Query: 79  IHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGV 138
                +P   ++N+L+GA            + + + + GL  D  +LN +++C C    +
Sbjct: 415 EENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKL 474

Query: 139 SDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVIC 198
            +A+  L    ++ +  D V+ G LI G     K   A  L+ +         ++P+ I 
Sbjct: 475 DEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMK----ERQIMPSTIT 530

Query: 199 YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL 258
           Y S+I GLC+   V++      +M   G+ PD   YN +I  +C        +GN   A 
Sbjct: 531 YNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCL-------EGNVEKAF 583

Query: 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS 318
           + H E +        +  PDV +   ++  LC++ +++KA +LF  + S+G   DVV Y+
Sbjct: 584 QFHNEMIEN------LFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYN 637

Query: 319 SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
           ++I   C  G+ ++A  L   +E++   PD  +Y  +I + +   +++EA     +M+  
Sbjct: 638 TIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVES 697

Query: 379 GVRPDNSCIL-EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
           G+  D +  L +   +  +  +  F+     ++  ++ LC   + + A  LF ++ + G 
Sbjct: 698 GIVHDQNLKLGKGQNVLTSEVSEHFDFKSIAYSDQINELCNQHKYKDAMHLFVEVTKEGV 757

Query: 438 EPNVVTYTVMICGL 451
             N  TY  ++ GL
Sbjct: 758 ALNKYTYLNLMEGL 771



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 169/386 (43%), Gaps = 45/386 (11%)

Query: 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
           A+ +F K    + RPN++       S++        +   +VL   +K  G+ P+   +N
Sbjct: 159 ATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIK-LGVVPNTNSFN 217

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
            LI  YC     +DA            ++VN   E G  C PD +SY +I+++L K  L+
Sbjct: 218 ILIYGYCLESKVKDAL-----------DWVNKMSEFG--CVPDTVSYNTILDALLKRRLL 264

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
            +A++L LDMKS+G+ P+   Y+ L+ GYC +G + +A K+   +     +P   +YN L
Sbjct: 265 QEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNML 324

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPD----NSCI---------LEAAELFRTLHNTKF 402
           +N +    K++EA  +  EM  M V PD    N+ I          E   L   +     
Sbjct: 325 VNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGV 384

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
           + +   +N ++  +CK   +  A     K+   G  P+ VTY  +I   C  G + KA+ 
Sbjct: 385 KCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFR 444

Query: 463 LLPDMEEK-----------IRECL-------KAIELLHKMAKRYVKPDEITVSILEELLN 504
           ++ +M  K           I  CL       +A  LL   +KR    DE++  IL     
Sbjct: 445 MMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYF 504

Query: 505 KDENCHECMNLLPSFLSRNQEESKLT 530
           KDE     +NL      R    S +T
Sbjct: 505 KDEKGDRALNLWDEMKERQIMPSTIT 530



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 129/297 (43%), Gaps = 35/297 (11%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI---GLLPDFVSLNI 127
           AL  ++ M   Q  P   ++NS++G L   +     I   ++LN +   GL+PD  + NI
Sbjct: 512 ALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAI---DKLNEMLENGLVPDETTYNI 568

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           +++ FC    V  AF     ++  +F PDV T   L+RGLC +G   +A  LF   V+  
Sbjct: 569 IIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVS-- 626

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
                  +V+ Y +II  LCK+G       L  +M+ + + PD + Y  +I     A   
Sbjct: 627 --KGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRI 684

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           ++A           EEF     E G++ H   L          ++VL  +  E F D KS
Sbjct: 685 KEA-----------EEFTLKMVESGIV-HDQNLKLGK-----GQNVLTSEVSEHF-DFKS 726

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
                  + YS  I+  C   +  DA  LFV +  EG   +  +Y  L+    K  K
Sbjct: 727 -------IAYSDQINELCNQHKYKDAMHLFVEVTKEGVALNKYTYLNLMEGLIKRRK 776


>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 116/454 (25%), Positives = 195/454 (42%), Gaps = 87/454 (19%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL+PD VS N  M+  CK     +A      +  K   P++VT G L+ G   +G F + 
Sbjct: 216 GLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADM 275

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
              F           ++ N + +  +ID   K G +++  ++  +M+G+G+ PD F Y++
Sbjct: 276 MSFFNTMKG----DGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYST 331

Query: 237 LIRVYCCAVNWEDA----------------------------KGNTSAALELHEEFVNGN 268
           LI   C      DA                             G+   A EL  E +N N
Sbjct: 332 LISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMN-N 390

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
           G    I  P++  + SI++S+CK+  V  A  +F  +K  G   D++++++LIDGYCL+G
Sbjct: 391 G----IPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVG 446

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----- 383
            +  A  +  ++ S G  PDT +YNTL+N Y K  ++++ L+L+ EM    ++P      
Sbjct: 447 EMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYN 506

Query: 384 -------------------------------------------NSCILEAAELFRTLHNT 400
                                                      N+C  EA  +F+ L   
Sbjct: 507 IILDGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTM 566

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
             + ++T  N +++ +    R   A +LF  +   G  PN  TY +MI  L  EG +E+A
Sbjct: 567 NVKFNITTLNTMINSMYTVQRREEAKDLFSAISDSGLVPNASTYGIMIRNLLKEGSVEEA 626

Query: 461 YDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEI 494
            ++   ME+    C     LL+   +  ++  EI
Sbjct: 627 DNMFSSMEKS--GCAPCSRLLNDTIRTLLEKGEI 658



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 160/364 (43%), Gaps = 33/364 (9%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG- 178
           P   +  ++MN  C+           GR+LR     D      +++ LC   +  +A   
Sbjct: 6   PTIFTYGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTDDAVKV 65

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK-VRVLFLDMKGRGI-YPDAFVYNS 236
           L  +     C    +P+   YA ++  LC D    + + +L +  K  G+  PD   YN+
Sbjct: 66  LLRRMTELGC----VPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNT 121

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           +I  +         +G    A  L+ E +    + G +  PDV+++ SIIN+LCK   VD
Sbjct: 122 VIHGFF-------KEGKIGKACNLYHEMM----QQGFV--PDVVTHNSIINALCKARAVD 168

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A+ L   M   G+ P+ V Y+S+I GY  +GR ++A K+F  +   G IPD  S+N+ +
Sbjct: 169 NAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFM 228

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFE 403
           +S  K  + +EA  ++  M + G RP+               C  +    F T+      
Sbjct: 229 DSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIV 288

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            +  VF  L+D   K   +  A  +  ++   G  P+V TY+ +I  LC  G +  A D 
Sbjct: 289 ANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDK 348

Query: 464 LPDM 467
              M
Sbjct: 349 FNQM 352



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 80/373 (21%), Positives = 145/373 (38%), Gaps = 66/373 (17%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           D + FFN M           F  L+ A A +      + +   +   GL PD  + + L+
Sbjct: 274 DMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLI 333

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC- 188
           +  C+M  ++DA     +++     P+ V    LI+G C  G   +A  L  + +     
Sbjct: 334 SALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIP 393

Query: 189 RPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVRV 217
           RPN+                                 ++I + ++IDG C  G + K   
Sbjct: 394 RPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFS 453

Query: 218 LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA--------------------------- 250
           +   M   GI PD F YN+L+  Y  +   +D                            
Sbjct: 454 VLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLF 513

Query: 251 -KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
             G T AA ++  E +      G      + +Y  I+  LC++   D+A  +F  + +  
Sbjct: 514 RAGRTVAAQKMLHEMI------GCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTMN 567

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
           +  ++   +++I+    + R ++A+ LF +I   G +P+ S+Y  +I +  K   VEEA 
Sbjct: 568 VKFNITTLNTMINSMYTVQRREEAKDLFSAISDSGLVPNASTYGIMIRNLLKEGSVEEAD 627

Query: 370 SLYGEMISMGVRP 382
           +++  M   G  P
Sbjct: 628 NMFSSMEKSGCAP 640



 Score = 43.1 bits (100), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 34/185 (18%)

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS----------CILEAAELFRT 396
           P   +Y  ++N   +  + E  L+ +G ++  G++ D +          C     +  + 
Sbjct: 6   PTIFTYGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTDDAVKV 65

Query: 397 LHNTKFEL----DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP--EPNVVTYTVMICG 450
           L     EL    D   +  ++  LC   R + A +L + + +      P+VVTY  +I G
Sbjct: 66  LLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHG 125

Query: 451 LCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPD 492
              EG I KA +L  +M +                  K R    A  LL +M    V P+
Sbjct: 126 FFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPN 185

Query: 493 EITVS 497
           ++T +
Sbjct: 186 KVTYT 190


>gi|255548994|ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545497|gb|EEF47002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 927

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/412 (27%), Positives = 195/412 (47%), Gaps = 48/412 (11%)

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
           + +  + N L++  CK   +S+A     ++L K  +P  V+   +I G C QG    A+ 
Sbjct: 450 IANIFTYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAAS 509

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           +F+  +  DC   + PNVI Y+ ++DG  K+G       +F  M    I P  F YN  I
Sbjct: 510 VFSDML--DC--GLKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKI 565

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
              C         G TS A ++ ++FV    E G +  P  L+Y SI++   K+  V  A
Sbjct: 566 NGLCKV-------GRTSEAQDMLKKFV----EKGFV--PVCLTYNSIMDGFIKEGSVSSA 612

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
              + +M   G+ P+V+ Y++LI+G+C     D A K+   + ++G   D ++Y  LI+ 
Sbjct: 613 LTAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDG 672

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL-------------D 405
           + K + +E A  L+ E++  G+ P++         +R L+N +  L             D
Sbjct: 673 FCKKQDIETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCD 732

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
           L  +  L+DGL K  RL  A +L+ ++   G  P+++ YTV+I GLC +G +E A  +L 
Sbjct: 733 LQTYTTLIDGLLKEGRLVLALDLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQKILA 792

Query: 466 DMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           +ME                   K     +A  L ++M  + + P++ T  IL
Sbjct: 793 EMERDSITPNVPIYNALIAGHFKAGNLQEAFRLHNEMLDKGLTPNDTTYDIL 844



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 118/448 (26%), Positives = 203/448 (45%), Gaps = 39/448 (8%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSL-LGALAGKKYYVNFICLSERLNTIGLLPDFV 123
           E ++++A   +  M+     P   S+NS+ LG        +     S+ L+  GL P+ +
Sbjct: 466 EGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSDMLDC-GLKPNVI 524

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           + +ILM+ + K      AF    R++ +   P   T    I GLC  G+ +EA  +  KF
Sbjct: 525 TYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKF 584

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
           V        +P  + Y SI+DG  K+G V+     + +M   G+ P+   Y +LI  +C 
Sbjct: 585 V----EKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFC- 639

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                    NT  AL++  E  N   EL      D+ +Y ++I+  CK   ++ A  LF 
Sbjct: 640 ------KNNNTDLALKMRNEMRNKGLEL------DIAAYGALIDGFCKKQDIETASWLFS 687

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
           ++   G+ P+ V+Y+SLI GY  +  ++ A  L   +  EG   D  +Y TLI+   K  
Sbjct: 688 ELLDGGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLKEG 747

Query: 364 KVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFN 410
           ++  AL LY EM + G+ PD                +  A ++   +       ++ ++N
Sbjct: 748 RLVLALDLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQKILAEMERDSITPNVPIYN 807

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP----- 465
            L+ G  K+  L+ A+ L  ++   G  PN  TY ++I G  I+GG      LL      
Sbjct: 808 ALIAGHFKAGNLQEAFRLHNEMLDKGLTPNDTTYDILINGK-IKGGNSALKSLLSLKFKD 866

Query: 466 -DMEEKIRECLKAIELLHKMAKRYVKPD 492
               ++I E     +++ K   +Y++P+
Sbjct: 867 GKGMKRINEQDSIKKVIEKAVNKYLRPE 894



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 113/484 (23%), Positives = 195/484 (40%), Gaps = 95/484 (19%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALA-------GKKYYVNFI-------CLSER 112
           +LNDA+  FN ++     P++   N LL AL         ++ Y   +       C +  
Sbjct: 189 KLNDAIGCFNRLVESDIVPWIKFLNFLLTALVKNDMIYEAREVYEKMVLKGVHGDCFTVH 248

Query: 113 L---------------------NTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRK 151
           +                      + G+  D  + +I++  FCK + V  A   L  +  K
Sbjct: 249 IMMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVIQAFCKNLDVELACGLLKDMRDK 308

Query: 152 VFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI------------------ 193
            + P   T   +I     QG   EA  L  + V+   + NV+                  
Sbjct: 309 GWVPSEGTFTSVIGACVKQGNMVEALRLKDEMVSCGVQMNVVVATTLVKGYCKQDKLVSA 368

Query: 194 -------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
                        PN + YA +I+  CK+G + K   L+  MK + I P  F+ NSLIR 
Sbjct: 369 LEFFDKMNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKNICPTVFIVNSLIRG 428

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH-PDVLSYCSIINSLCKDVLVDKAK 299
           +    + E+A        +L +E         V C   ++ +Y S+++ LCK+  + +A 
Sbjct: 429 FLKVESREEAS-------KLFDE--------AVACDIANIFTYNSLLSWLCKEGKMSEAT 473

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            L+  M  +G+ P  V Y+S+I G+C  G +D A  +F  +   G  P+  +Y+ L++ Y
Sbjct: 474 TLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSDMLDCGLKPNVITYSILMDGY 533

Query: 360 SKIEKVEEALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFELDL 406
            K    E A  ++  M+   + P +                 EA ++ +      F    
Sbjct: 534 FKNGDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVC 593

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             +N ++DG  K   + SA   ++++   G  PNV+TYT +I G C     + A  +  +
Sbjct: 594 LTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNE 653

Query: 467 MEEK 470
           M  K
Sbjct: 654 MRNK 657



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 149/370 (40%), Gaps = 61/370 (16%)

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           N L+N + K   ++DA     R++     P +  L  L+  L       EA  ++ K V 
Sbjct: 178 NYLLNSYIKANKLNDAIGCFNRLVESDIVPWIKFLNFLLTALVKNDMIYEAREVYEKMVL 237

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
                 V  +      ++    KD    + +  FL+ K RG+  DA  Y+ +I+ +C  +
Sbjct: 238 ----KGVHGDCFTVHIMMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVIQAFCKNL 293

Query: 246 NWEDA----------------------------KGNTSAALELHEEFVNGNGELGVICHP 277
           + E A                            +GN   AL L +E V+   ++ V+   
Sbjct: 294 DVELACGLLKDMRDKGWVPSEGTFTSVIGACVKQGNMVEALRLKDEMVSCGVQMNVVVA- 352

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
                 +++   CK   +  A E F  M   G  P+ V Y+ LI+  C  G +  A  L+
Sbjct: 353 -----TTLVKGYCKQDKLVSALEFFDKMNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLY 407

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397
             ++++   P     N+LI  + K+E  EEA  L+ E ++  +          A +F   
Sbjct: 408 TQMKNKNICPTVFIVNSLIRGFLKVESREEASKLFDEAVACDI----------ANIF--- 454

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                      +N L+  LCK  ++  A  L++K+   G  P  V+Y  MI G C +G +
Sbjct: 455 ----------TYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNL 504

Query: 458 EKAYDLLPDM 467
           + A  +  DM
Sbjct: 505 DMAASVFSDM 514



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/242 (20%), Positives = 99/242 (40%), Gaps = 31/242 (12%)

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
           D+ +Y+ L++ Y    +++DA   F  +     +P     N L+ +  K + + EA  +Y
Sbjct: 173 DIRIYNYLLNSYIKANKLNDAIGCFNRLVESDIVPWIKFLNFLLTALVKNDMIYEAREVY 232

Query: 373 GEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            +M+  GV  D             ++   EA + F    +   +LD   ++ ++   CK+
Sbjct: 233 EKMVLKGVHGDCFTVHIMMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVIQAFCKN 292

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE---------- 469
             +  A  L K +   G  P+  T+T +I     +G + +A  L  +M            
Sbjct: 293 LDVELACGLLKDMRDKGWVPSEGTFTSVIGACVKQGNMVEALRLKDEMVSCGVQMNVVVA 352

Query: 470 --------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
                   K  + + A+E   KM +    P+ +T ++L E   K+ N  +  +L     +
Sbjct: 353 TTLVKGYCKQDKLVSALEFFDKMNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKN 412

Query: 522 RN 523
           +N
Sbjct: 413 KN 414


>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 189/400 (47%), Gaps = 30/400 (7%)

Query: 81  MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSD 140
           M  TP +P +N+L+  +  +  +     L + +   G+ P+ +S   ++N       V  
Sbjct: 240 MSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVEL 299

Query: 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200
           +   L ++  +  SP++ T   LI+G  ++G   EA   + + +    R  V+PNV+ Y 
Sbjct: 300 SLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMI----REGVVPNVVAYN 355

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL 260
           +++ GLC    +     +F  M+  G  P+   Y++LI  Y  A       G+   A E+
Sbjct: 356 ALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKA-------GDLDGASEV 408

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
               +         CHP+V++Y  +++ LC++ + ++A  L  +M+     P+ V +++ 
Sbjct: 409 WNWMITHG------CHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTF 462

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           I G C  GR+D A K+F  + + GC P+T++YN L++S  K  +  EA  L  +M   G+
Sbjct: 463 IKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGI 522

Query: 381 RPD----NSCIL---------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
             +    N+ I          EA EL   +     + D    N ++D  CK  ++  A +
Sbjct: 523 ELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQ 582

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           L  +L      P+++ YT +I G+C   G+E+A   L  M
Sbjct: 583 LMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRM 622



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 121/432 (28%), Positives = 192/432 (44%), Gaps = 54/432 (12%)

Query: 81  MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSD 140
           M+P  F  ++N LL AL           L   +++ G  PD VS   L++  CK+  V +
Sbjct: 177 MEPNVF--TYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKE 234

Query: 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200
           A     R L   F+P V     LI G+C +  F EA  L  + +       + PNVI Y 
Sbjct: 235 A-----RELAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMM----NKGIDPNVISYT 285

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL 260
           +II+ L   G V     +   M  RG  P+   + SLI+ +         KG +  AL+ 
Sbjct: 286 TIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFL-------KGGSHEALDF 338

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
            +  +      GV+  P+V++Y ++++ LC    +  A  +F  M+  G  P+V  YS+L
Sbjct: 339 WDRMIRE----GVV--PNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSAL 392

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           IDGY   G +D A +++  + + GC P+  +Y  +++   +     +A  L   M     
Sbjct: 393 IDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENC 452

Query: 381 RPDNSC-------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
            P+                +  A ++F  + N+    + T +N L+D L K  R   A+ 
Sbjct: 453 PPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFG 512

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKR 487
           L K +   G E N+VTY  +I G C  G +                  +A+ELL KM  R
Sbjct: 513 LVKDMEHRGIELNLVTYNTIIYGYCCAGMLG-----------------EALELLGKMVVR 555

Query: 488 YVKPDEITVSIL 499
             KPD ITV+I+
Sbjct: 556 GTKPDAITVNIV 567



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 108/471 (22%), Positives = 202/471 (42%), Gaps = 55/471 (11%)

Query: 16  KPSSSLRNSKKPI-SLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCF 74
           KPS     S  P+ +L +ENE  S       +V ++  +LK L       E ++  AL +
Sbjct: 15  KPSIPFVLSTNPVPNLKAENEEKS-------SVLKEADVLKRLKH-----EHDITLALEY 62

Query: 75  FNYMIHMQPTPFMP-SFNSLLGALAGKKYY--VNFICLSERLNTIGLLPD-FVSLNILMN 130
           F  + + +     P ++  ++  LA ++    V ++    +L  I    D F+S+   + 
Sbjct: 63  FKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKLEGISCSEDLFISV---IG 119

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
            + +      A     R+      P V     ++  L  + +F   + +++       + 
Sbjct: 120 SYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMK----KD 175

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
            + PNV  Y  ++  LCK+  V+    L ++M  +G  PD   Y +LI   C        
Sbjct: 176 GMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLC-------K 228

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
            G    A EL   F            P V  Y ++IN +CK+   ++A +L  +M ++GI
Sbjct: 229 LGKVKEARELAMSFT-----------PSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGI 277

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
            P+V+ Y+++I+     G ++ +  +   + + GC P+  ++ +LI  +       EAL 
Sbjct: 278 DPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALD 337

Query: 371 LYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
            +  MI  GV P+                + +A  +F  +       ++  ++ L+DG  
Sbjct: 338 FWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYA 397

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           K+  L  A E++  +  +G  PNVV YT M+  LC      +AY L+ +M+
Sbjct: 398 KAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQ 448



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 153/345 (44%), Gaps = 28/345 (8%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           S +G VEL  +L     M     +P + +F SL+     K      +   +R+   G++P
Sbjct: 292 SDAGNVEL--SLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVP 349

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           + V+ N LM+  C    + DA     ++      P+V T   LI G    G    AS ++
Sbjct: 350 NVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVW 409

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
              +   C PNV+     Y  ++D LC++   N+   L  +M+     P+   +N+ I+ 
Sbjct: 410 NWMITHGCHPNVV----AYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKG 465

Query: 241 YCCA--VNWE----DAKGN------TSAALELHEEFVNGN--GE-LGVI-------CHPD 278
            C +  V+W     D  GN      T+   EL +  +     GE  G++          +
Sbjct: 466 LCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELN 525

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
           +++Y +II   C   ++ +A EL   M  RG  PD +  + +ID YC  G+++ A +L  
Sbjct: 526 LVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMD 585

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            + +    PD  +Y +LI+       VEEA+     M+S G+ P+
Sbjct: 586 RLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPN 630



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 136/319 (42%), Gaps = 44/319 (13%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           ++AL F++ MI     P + ++N+L+  L  K+   + + +  ++   G  P+  + + L
Sbjct: 333 HEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSAL 392

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           ++ + K   +  A      ++     P+VV   C++  LC    F +A  L       +C
Sbjct: 393 IDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENC 452

Query: 189 RPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVRV 217
            PN +                               PN   Y  ++D L KD    +   
Sbjct: 453 PPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFG 512

Query: 218 LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277
           L  DM+ RGI  +   YN++I  YCCA       G    ALEL  + V    +      P
Sbjct: 513 LVKDMEHRGIELNLVTYNTIIYGYCCA-------GMLGEALELLGKMVVRGTK------P 559

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           D ++   +I++ CK   V+ A +L   + +    PD++ Y+SLI G C    +++A    
Sbjct: 560 DAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYL 619

Query: 338 VSIESEGCIPDTSSYNTLI 356
             + SEG  P+ +++N L+
Sbjct: 620 RRMLSEGISPNVATWNVLV 638



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 6/177 (3%)

Query: 63  SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF 122
           SG V+   A+  F+ M +    P   ++N LL +L   + +     L + +   G+  + 
Sbjct: 469 SGRVDW--AIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNL 526

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           V+ N ++  +C    + +A   LG+++ +   PD +T+  +I   C QGK   A  L  +
Sbjct: 527 VTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDR 586

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             A    P++I     Y S+I G+C    V +  V    M   GI P+   +N L+R
Sbjct: 587 LSAGKWHPDII----AYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVR 639



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 2/101 (1%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNF-ICLSERLNTIGLLPDFVSLN 126
           L +AL     M+     P   + N ++ A   K+  VN  I L +RL+     PD ++  
Sbjct: 542 LGEALELLGKMVVRGTKPDAITVNIVIDAYC-KQGKVNIAIQLMDRLSAGKWHPDIIAYT 600

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGL 167
            L++  C  IGV +A V L R+L +  SP+V T   L+R L
Sbjct: 601 SLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHL 641


>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Vitis vinifera]
          Length = 666

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 189/400 (47%), Gaps = 30/400 (7%)

Query: 81  MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSD 140
           M  TP +P +N+L+  +  +  +     L + +   G+ P+ +S   ++N       V  
Sbjct: 240 MSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVEL 299

Query: 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200
           +   L ++  +  SP++ T   LI+G  ++G   EA   + + +    R  V+PNV+ Y 
Sbjct: 300 SLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMI----REGVVPNVVAYN 355

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL 260
           +++ GLC    +     +F  M+  G  P+   Y++LI  Y  A       G+   A E+
Sbjct: 356 ALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKA-------GDLDGASEV 408

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
               +         CHP+V++Y  +++ LC++ + ++A  L  +M+     P+ V +++ 
Sbjct: 409 WNWMITHG------CHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTF 462

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           I G C  GR+D A K+F  + + GC P+T++YN L++S  K  +  EA  L  +M   G+
Sbjct: 463 IKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGI 522

Query: 381 RPD----NSCIL---------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
             +    N+ I          EA EL   +     + D    N ++D  CK  ++  A +
Sbjct: 523 ELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQ 582

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           L  +L      P+++ YT +I G+C   G+E+A   L  M
Sbjct: 583 LMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRM 622



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 121/432 (28%), Positives = 192/432 (44%), Gaps = 54/432 (12%)

Query: 81  MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSD 140
           M+P  F  ++N LL AL           L   +++ G  PD VS   L++  CK+  V +
Sbjct: 177 MEPNVF--TYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKE 234

Query: 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200
           A     R L   F+P V     LI G+C +  F EA  L  + +       + PNVI Y 
Sbjct: 235 A-----RELAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMM----NKGIDPNVISYT 285

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL 260
           +II+ L   G V     +   M  RG  P+   + SLI+ +         KG +  AL+ 
Sbjct: 286 TIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFL-------KGGSHEALDF 338

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
            +  +      GV+  P+V++Y ++++ LC    +  A  +F  M+  G  P+V  YS+L
Sbjct: 339 WDRMIRE----GVV--PNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSAL 392

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           IDGY   G +D A +++  + + GC P+  +Y  +++   +     +A  L   M     
Sbjct: 393 IDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENC 452

Query: 381 RPDNSC-------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
            P+                +  A ++F  + N+    + T +N L+D L K  R   A+ 
Sbjct: 453 PPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFG 512

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKR 487
           L K +   G E N+VTY  +I G C  G +                  +A+ELL KM  R
Sbjct: 513 LVKDMEHRGIELNLVTYNTIIYGYCCAGMLG-----------------EALELLGKMVVR 555

Query: 488 YVKPDEITVSIL 499
             KPD ITV+I+
Sbjct: 556 GTKPDAITVNIV 567



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 108/471 (22%), Positives = 202/471 (42%), Gaps = 55/471 (11%)

Query: 16  KPSSSLRNSKKPI-SLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCF 74
           KPS     S  P+ +L +ENE  S       +V ++  +LK L       E ++  AL +
Sbjct: 15  KPSIPFVLSTNPVPNLKAENEEKS-------SVLKEADVLKRLKH-----EHDITLALEY 62

Query: 75  FNYMIHMQPTPFMP-SFNSLLGALAGKKYY--VNFICLSERLNTIGLLPD-FVSLNILMN 130
           F  + + +     P ++  ++  LA ++    V ++    +L  I    D F+S+   + 
Sbjct: 63  FKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKLEGISCSEDLFISV---IG 119

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
            + +      A     R+      P V     ++  L  + +F   + +++       + 
Sbjct: 120 SYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMK----KD 175

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
            + PNV  Y  ++  LCK+  V+    L ++M  +G  PD   Y +LI   C        
Sbjct: 176 GMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLC-------K 228

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
            G    A EL   F            P V  Y ++IN +CK+   ++A +L  +M ++GI
Sbjct: 229 LGKVKEARELAMSFT-----------PSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGI 277

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
            P+V+ Y+++I+     G ++ +  +   + + GC P+  ++ +LI  +       EAL 
Sbjct: 278 DPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALD 337

Query: 371 LYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
            +  MI  GV P+                + +A  +F  +       ++  ++ L+DG  
Sbjct: 338 FWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYA 397

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           K+  L  A E++  +  +G  PNVV YT M+  LC      +AY L+ +M+
Sbjct: 398 KAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQ 448



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 153/345 (44%), Gaps = 28/345 (8%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           S +G VEL  +L     M     +P + +F SL+     K      +   +R+   G++P
Sbjct: 292 SDAGNVEL--SLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVP 349

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           + V+ N LM+  C    + DA     ++      P+V T   LI G    G    AS ++
Sbjct: 350 NVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVW 409

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
              +   C PNV+     Y  ++D LC++   N+   L  +M+     P+   +N+ I+ 
Sbjct: 410 NWMITHGCHPNVV----AYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKG 465

Query: 241 YCCA--VNWE----DAKGN------TSAALELHEEFVNGN--GE-LGVI-------CHPD 278
            C +  V+W     D  GN      T+   EL +  +     GE  G++          +
Sbjct: 466 LCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELN 525

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
           +++Y +II   C   ++ +A EL   M  RG  PD +  + +ID YC  G+++ A +L  
Sbjct: 526 LVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMD 585

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            + +    PD  +Y +LI+       VEEA+     M+S G+ P+
Sbjct: 586 RLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPN 630



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 136/319 (42%), Gaps = 44/319 (13%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           ++AL F++ MI     P + ++N+L+  L  K+   + + +  ++   G  P+  + + L
Sbjct: 333 HEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSAL 392

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           ++ + K   +  A      ++     P+VV   C++  LC    F +A  L       +C
Sbjct: 393 IDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENC 452

Query: 189 RPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVRV 217
            PN +                               PN   Y  ++D L KD    +   
Sbjct: 453 PPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFG 512

Query: 218 LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277
           L  DM+ RGI  +   YN++I  YCCA       G    ALEL  + V    +      P
Sbjct: 513 LVKDMEHRGIELNLVTYNTIIYGYCCA-------GMLGEALELLGKMVVRGTK------P 559

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           D ++   +I++ CK   V+ A +L   + +    PD++ Y+SLI G C    +++A    
Sbjct: 560 DAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYL 619

Query: 338 VSIESEGCIPDTSSYNTLI 356
             + SEG  P+ +++N L+
Sbjct: 620 RRMLSEGISPNVATWNVLV 638



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 6/177 (3%)

Query: 63  SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF 122
           SG V+   A+  F+ M +    P   ++N LL +L   + +     L + +   G+  + 
Sbjct: 469 SGRVDW--AIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNL 526

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           V+ N ++  +C    + +A   LG+++ +   PD +T+  +I   C QGK   A  L  +
Sbjct: 527 VTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDR 586

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             A    P++I     Y S+I G+C    V +  V    M   GI P+   +N L+R
Sbjct: 587 LSAGKWHPDII----AYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVR 639



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 2/101 (1%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNF-ICLSERLNTIGLLPDFVSLN 126
           L +AL     M+     P   + N ++ A   K+  VN  I L +RL+     PD ++  
Sbjct: 542 LGEALELLGKMVVRGTKPDAITVNIVIDAYC-KQGKVNIAIQLMDRLSAGKWHPDIIAYT 600

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGL 167
            L++  C  IGV +A V L R+L +  SP+V T   L+R L
Sbjct: 601 SLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHL 641


>gi|414878622|tpg|DAA55753.1| TPA: hypothetical protein ZEAMMB73_281441 [Zea mays]
          Length = 573

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 119/433 (27%), Positives = 199/433 (45%), Gaps = 57/433 (13%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           ++   +G+  D V  NI M+ +CK+  +++A   L  ++     PD +   CLI G C++
Sbjct: 145 QKFRDLGVHLDGVLYNIAMDAYCKLGNMNEAVKLLNEMMAGSLVPDKIHYTCLINGYCLK 204

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G+   A  +F + +    + N+ P+V+ Y  +  G  ++G V KV  +   M  +G+ P+
Sbjct: 205 GETENAWQVFEEML----KANIKPDVVTYNILASGYSRNGLVMKVFDILEHMMDQGLEPN 260

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALE--------LHEEFVNGNGELGVICHP----- 277
           +  Y   I  +C   N  +A+   +   E        L+   V G    G   H      
Sbjct: 261 SLTYGIAIAGFCRGGNLSEAEVLFNIVEERGIDNINVLYGSMVCGYLHSGWTDHAYMLFL 320

Query: 278 ---------DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                    D LS   +IN LC+D  V +A  +   M  + ++PDV+ YS LI  YC   
Sbjct: 321 RVAKQGNMVDRLSCSKLINGLCRDEKVGEASTVCKMMLEKNVVPDVISYSKLISAYCQTR 380

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----- 383
            + +AR  F  +   G + D   Y  L+N Y K+ +++EA  L+ +MI++G++PD     
Sbjct: 381 DMHNARLWFHDMVERG-LSDVIVYTVLMNGYCKVGRLQEACELFVQMINLGIKPDVVAYT 439

Query: 384 ---NSCILEAAE-------------LFRTLH--------NTKFELDLTVFNCLVDGLCKS 419
              +  + E  +               RT H        + + E D+T +  L+DG CK+
Sbjct: 440 VLLDGHLKETLQQGWQGIAKERRTFFLRTKHKVLLNSMKDMEIEPDVTCYTVLIDGRCKA 499

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-IRECLKAI 478
             L  A  LF ++   G  P+V TYT +I G C +G I KA DL  +M  K ++  + + 
Sbjct: 500 EYLEEARGLFDEMLAKGLIPDVHTYTALINGYCSQGEIAKAEDLFQEMIAKGMKPDVLSF 559

Query: 479 ELLHKMAKRYVKP 491
            +LHK   R+ K 
Sbjct: 560 SVLHKRTLRHEKA 572



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 115/472 (24%), Positives = 193/472 (40%), Gaps = 78/472 (16%)

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           ++ N++++  CK + + +A   L    R   +PD+ +   LI   C  G   +A      
Sbjct: 52  MAYNMVIDGLCKEMKLKEAEKVLEIKTRHGSAPDLYSYSYLIHSHCKMGNLEKAWYHVED 111

Query: 183 FVAFDCRPNVIPNVICY--ASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            V+     N      CY  A ++  L K G V++V V F   +  G++ D  +YN  +  
Sbjct: 112 MVSHGIEIN------CYIVAYLLQCLRKLGMVSEVIVHFQKFRDLGVHLDGVLYNIAMDA 165

Query: 241 YC----------------------------CAVNWEDAKGNTSAALELHEEFVNGNGELG 272
           YC                            C +N    KG T  A ++ EE +  N +  
Sbjct: 166 YCKLGNMNEAVKLLNEMMAGSLVPDKIHYTCLINGYCLKGETENAWQVFEEMLKANIKPD 225

Query: 273 VICH-----------------------------PDVLSYCSIINSLCKDVLVDKAKELFL 303
           V+ +                             P+ L+Y   I   C+   + +A+ LF 
Sbjct: 226 VVTYNILASGYSRNGLVMKVFDILEHMMDQGLEPNSLTYGIAIAGFCRGGNLSEAEVLFN 285

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            ++ RGI    V+Y S++ GY   G  D A  LF+ +  +G + D  S + LIN   + E
Sbjct: 286 IVEERGIDNINVLYGSMVCGYLHSGWTDHAYMLFLRVAKQGNMVDRLSCSKLINGLCRDE 345

Query: 364 KVEEALSLYGEMISMGVRPD---NSCILEAAELFRTLHNTKFEL---------DLTVFNC 411
           KV EA ++   M+   V PD    S ++ A    R +HN +            D+ V+  
Sbjct: 346 KVGEASTVCKMMLEKNVVPDVISYSKLISAYCQTRDMHNARLWFHDMVERGLSDVIVYTV 405

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI 471
           L++G CK  RL+ A ELF ++   G +P+VV YTV++ G   E  +++ +  +       
Sbjct: 406 LMNGYCKVGRLQEACELFVQMINLGIKPDVVAYTVLLDGHLKE-TLQQGWQGIAKERRTF 464

Query: 472 RECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
               K   LL+ M    ++PD    ++L +   K E   E   L    L++ 
Sbjct: 465 FLRTKHKVLLNSMKDMEIEPDVTCYTVLIDGRCKAEYLEEARGLFDEMLAKG 516



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 95/395 (24%), Positives = 160/395 (40%), Gaps = 69/395 (17%)

Query: 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD--CRPNVIPNVICYASIIDGLCKDGFVN 213
           DV      I GLC  GKF  A  +  ++       +  V    + Y  +IDGLCK+  + 
Sbjct: 9   DVHGFSSFIIGLCDCGKFDLAYNMVRRYAVLQEISQERVPIEAMAYNMVIDGLCKEMKLK 68

Query: 214 KVRVLFLDMKGR-GIYPDAFVYNSLIRVYCCAVN----WEDAKGNTSAALELH------- 261
           +   + L++K R G  PD + Y+ LI  +C   N    W   +   S  +E++       
Sbjct: 69  EAEKV-LEIKTRHGSAPDLYSYSYLIHSHCKMGNLEKAWYHVEDMVSHGIEINCYIVAYL 127

Query: 262 -----------EEFVNGNG--ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
                      E  V+     +LGV  H D + Y   +++ CK   +++A +L  +M + 
Sbjct: 128 LQCLRKLGMVSEVIVHFQKFRDLGV--HLDGVLYNIAMDAYCKLGNMNEAVKLLNEMMAG 185

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
            ++PD + Y+ LI+GYCL G  ++A ++F  +      PD  +YN L + YS+   V + 
Sbjct: 186 SLVPDKIHYTCLINGYCLKGETENAWQVFEEMLKANIKPDVVTYNILASGYSRNGLVMKV 245

Query: 369 LSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
             +   M+  G+ P++                        +   + G C+   L  A  L
Sbjct: 246 FDILEHMMDQGLEPNS----------------------LTYGIAIAGFCRGGNLSEAEVL 283

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRY 488
           F  +   G +   V Y  M+CG    G  + AY L                   ++AK+ 
Sbjct: 284 FNIVEERGIDNINVLYGSMVCGYLHSGWTDHAYMLFL-----------------RVAKQG 326

Query: 489 VKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
              D ++ S L   L +DE   E   +    L +N
Sbjct: 327 NMVDRLSCSKLINGLCRDEKVGEASTVCKMMLEKN 361



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 106/280 (37%), Gaps = 71/280 (25%)

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRID--------------------------------- 331
           M   G+  DV  +SS I G C  G+ D                                 
Sbjct: 1   MIEMGVKLDVHGFSSFIIGLCDCGKFDLAYNMVRRYAVLQEISQERVPIEAMAYNMVIDG 60

Query: 332 --------DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
                   +A K+       G  PD  SY+ LI+S+ K+  +E+A     +M+S G+  +
Sbjct: 61  LCKEMKLKEAEKVLEIKTRHGSAPDLYSYSYLIHSHCKMGNLEKAWYHVEDMVSHGIEIN 120

Query: 384 NSCILEAAELFRTL--------HNTKF-----ELDLTVFNCLVDGLCKSWRLRSAWELFK 430
              +    +  R L        H  KF      LD  ++N  +D  CK   +  A +L  
Sbjct: 121 CYIVAYLLQCLRKLGMVSEVIVHFQKFRDLGVHLDGVLYNIAMDAYCKLGNMNEAVKLLN 180

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVK 490
           ++      P+ + YT +I G C++G  E A+                 ++  +M K  +K
Sbjct: 181 EMMAGSLVPDKIHYTCLINGYCLKGETENAW-----------------QVFEEMLKANIK 223

Query: 491 PDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           PD +T +IL    +++    +  ++L   + +  E + LT
Sbjct: 224 PDVVTYNILASGYSRNGLVMKVFDILEHMMDQGLEPNSLT 263


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 128/488 (26%), Positives = 215/488 (44%), Gaps = 77/488 (15%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G++E+  +L  F  M     TP + ++NSL+            IC+ E++      PD
Sbjct: 267 KEGDLEMARSL--FTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPD 324

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF- 180
            ++ N L+NCFCK   +  AF  L  +      P+VVT    I   C +G   EA   F 
Sbjct: 325 VITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFV 384

Query: 181 --------------TKFVAFDCRPNVIP----------------NVICYASIIDGLCKDG 210
                         T  +  +C+   +                 NV+ Y +++DGLC++G
Sbjct: 385 DMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEG 444

Query: 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGE 270
            + +   +F  M   G+ P+   Y +L+  +  A   E AK       E+ E+ +     
Sbjct: 445 RMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILK---EMKEKCIK---- 497

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
                 PD+L Y +I+  LC +  +++AK L  ++K  GI  + V+Y++L+D Y   G+ 
Sbjct: 498 ------PDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQA 551

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------- 383
            +A  L   +   G I    +Y  LI+   K   V+EA+  +G M  +G++P+       
Sbjct: 552 TEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTAL 611

Query: 384 ------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
                 N+C   A +LF  + +     D   +  L+DG  K   L+ A  L  ++   G 
Sbjct: 612 VDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGM 671

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDM-------EEKIRECL-----------KAIE 479
           E ++  YT +I GL   G ++KA +LL +M       +E +  CL           +A+E
Sbjct: 672 ELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALE 731

Query: 480 LLHKMAKR 487
           L ++MAKR
Sbjct: 732 LQNEMAKR 739



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 117/465 (25%), Positives = 188/465 (40%), Gaps = 127/465 (27%)

Query: 143 VALGRILRKVFSP--------DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
           V  G + RK F           V T   +I  LC +G    A  LFT+           P
Sbjct: 233 VGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMK----EAGFTP 288

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           +++ Y S+IDG  K G +++   +F  MK     PD   YN+LI  +C    +E      
Sbjct: 289 DIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFC---KFE----RM 341

Query: 255 SAALE-LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP- 312
             A E LHE   NG         P+V++Y + I++ CK+ ++ +A + F+DM+   + P 
Sbjct: 342 PKAFEFLHEMKANG-------LKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPN 394

Query: 313 ----------------------------------DVVVYSSLIDGYCLMGRIDDARKLFV 338
                                             +VV Y++L+DG C  GR+ +A ++F 
Sbjct: 395 EFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFR 454

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------NSC 386
           ++ + G  P+  +Y  L++ + K +++E A  +  EM    ++PD            N  
Sbjct: 455 AMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNES 514

Query: 387 ILEAAEL----------------FRTLHNTKFE--------------LDL------TVFN 410
            LE A+L                + TL +  F+              LDL        + 
Sbjct: 515 RLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYC 574

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            L+DGLCKS  ++ A   F ++   G +PNV  YT ++ GLC     E A  L  +M +K
Sbjct: 575 ALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDK 634

Query: 471 IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
                             + PD+I  + L +   K  N  E +NL
Sbjct: 635 -----------------GMMPDKIAYTALIDGNMKHGNLQEALNL 662



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 156/331 (47%), Gaps = 44/331 (13%)

Query: 193 IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252
           +P    + ++   L + G + +    FL M+   ++P     N+L+            + 
Sbjct: 182 VPGFGVFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLH-----------RL 230

Query: 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
           +     +L  +F    G  G+     V +Y  +I+ LCK+  ++ A+ LF  MK  G  P
Sbjct: 231 SKVGRGDLSRKFFKDMGAAGI--KRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTP 288

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
           D+V Y+SLIDG+  +G +D+   +F  ++   C PD  +YN LIN + K E++ +A    
Sbjct: 289 DIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFL 348

Query: 373 GEMISMGVRP---------DNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            EM + G++P         D  C    + EA + F  +       +   +  L+D  CK+
Sbjct: 349 HEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKA 408

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL---------PDMEE- 469
             L  A +L +++ + G + NVVTYT ++ GLC EG +++A ++          P+ E  
Sbjct: 409 GNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETY 468

Query: 470 --------KIRECLKAIELLHKMAKRYVKPD 492
                   K +E   A ++L +M ++ +KPD
Sbjct: 469 TALVHGFIKAKEMEYAKDILKEMKEKCIKPD 499



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 88/404 (21%), Positives = 161/404 (39%), Gaps = 105/404 (25%)

Query: 75  FNYMIHMQPTPFMP---SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131
           F ++  M+     P   ++++ + A   +      I     +  + L P+  +   L++ 
Sbjct: 345 FEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDA 404

Query: 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
            CK   +++A   +  IL+     +VVT   L+ GLC +G+  EA  +F   +     PN
Sbjct: 405 NCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPN 464

Query: 192 -------------------------------VIPNVICYASIIDGLCKDGFVNKVRVLFL 220
                                          + P+++ Y +I+ GLC +  + + ++L  
Sbjct: 465 QETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIG 524

Query: 221 DMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE---------------FV 265
           ++K  GI  +A +Y +L+  Y          G  + AL L EE                +
Sbjct: 525 EIKESGINTNAVIYTTLMDAYF-------KSGQATEALTLLEEMLDLGLIATEVTYCALI 577

Query: 266 NGNGELGVI--------------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
           +G  + G++                P+V  Y ++++ LCK+   + AK+LF +M  +G++
Sbjct: 578 DGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMM 637

Query: 312 PDVVVYSSLIDG----------------------------YCLM-------GRIDDARKL 336
           PD + Y++LIDG                            Y  +       G++  AR L
Sbjct: 638 PDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNL 697

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
              +  +G +PD   Y  LI  Y  + KV+EAL L  EM   G+
Sbjct: 698 LDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGM 741



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 106/236 (44%), Gaps = 17/236 (7%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+  + V    LM+ + K    ++A   L  +L        VT   LI GLC  G   EA
Sbjct: 530 GINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEA 589

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
              F +      +PNV      Y +++DGLCK+      + LF +M  +G+ PD   Y +
Sbjct: 590 MHHFGRMSEIGLQPNVA----VYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTA 645

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI       +     GN   AL L +  +    EL      D+ +Y ++I  L     V 
Sbjct: 646 LI-------DGNMKHGNLQEALNLRDRMIEIGMEL------DLHAYTALIWGLSHSGQVQ 692

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
           KA+ L  +M  +G++PD VVY  LI  Y  +G++D+A +L   +   G I   S +
Sbjct: 693 KARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGMITGLSDH 748



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 99/207 (47%), Gaps = 13/207 (6%)

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
           +C P    + ++ ++L +  ++++A E FL M+   + P     ++L+     +GR D +
Sbjct: 180 VCVPGFGVFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLS 239

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCILE 389
           RK F  + + G      +YN +I+   K   +E A SL+ +M   G  PD    NS I  
Sbjct: 240 RKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDG 299

Query: 390 AAEL---------FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
             +L         F  + +   + D+  +N L++  CK  R+  A+E   ++   G +PN
Sbjct: 300 HGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPN 359

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDM 467
           VVTY+  I   C EG +++A     DM
Sbjct: 360 VVTYSTFIDAFCKEGMLQEAIKFFVDM 386


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 127/470 (27%), Positives = 204/470 (43%), Gaps = 83/470 (17%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           N+AL  +  MI     P M ++++L+ AL  +      + L E + +IGL P+  +  I 
Sbjct: 217 NEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTIC 276

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           +    +   + DA+     +  +   PDV+T   LI  LC  GK  +A  L+ K  A   
Sbjct: 277 IRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSH 336

Query: 189 RPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVRV 217
            P+ +                               P+V+ Y  +I+ LCK G V++   
Sbjct: 337 SPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFD 396

Query: 218 LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277
           +   M  +GI+P+   YN++I     A   ++       ALEL E   +    LGV   P
Sbjct: 397 MLDVMTTKGIFPNLHTYNTMICGLLKARRLDE-------ALELLENMES----LGV--KP 443

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
              SY   I+   K     KA + F  MK RGI+P +   ++ +      GRI +A  +F
Sbjct: 444 TAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIF 503

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397
             +   G  PD+ +YN L+  YSK  ++++A  L  EMIS G  P               
Sbjct: 504 NDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEP--------------- 548

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                  D+ + N L++ L K+ R+ +AW++F +L      P VVTY +++ GL  EG I
Sbjct: 549 -------DVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKI 601

Query: 458 EKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDE 507
                            LKA+EL   M +    P+ IT + L + L+K++
Sbjct: 602 -----------------LKALELFGSMTESGCPPNTITFNSLLDCLSKND 634



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 154/321 (47%), Gaps = 33/321 (10%)

Query: 163  LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
            LI+ LC + K  +A  +F KF        + P +  Y  ++DGL    F  K   LF DM
Sbjct: 766  LIKVLCKRKKALDAQNVFDKFTK---NLGIHPTLESYNCLMDGLLGSNFTEKALELFEDM 822

Query: 223  KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF--VNGNGELGVICHPDVL 280
            K  G +P+ F YN L+          DA G +    +L++ +  +   G     C P+ +
Sbjct: 823  KSAGTHPNNFTYNLLL----------DAHGKSKRINKLYDLYSEMRSRG-----CEPNAI 867

Query: 281  SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
            ++  II++L K   ++KA +L+ ++ S    P    Y  LIDG    GR + A K+F  +
Sbjct: 868  THNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEM 927

Query: 341  ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCI 387
               GC P++  YN LIN + K  +++ A  L+ +M+  G+RPD                I
Sbjct: 928  LDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRI 987

Query: 388  LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
             EA + F  L  T  + D   +N +++GL KS RL  A  LF ++   G  P++ TY  +
Sbjct: 988  DEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNAL 1047

Query: 448  ICGLCIEGGIEKAYDLLPDME 468
            I  L I G ++ A  +  +++
Sbjct: 1048 ILHLGIAGKVDVAVKMYEELQ 1068



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 128/503 (25%), Positives = 215/503 (42%), Gaps = 94/503 (18%)

Query: 109  LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
            LSE ++  G  PD + +N L+N   K   V  A+   GR+     +P VVT   L+ GL 
Sbjct: 538  LSEMISK-GCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLG 596

Query: 169  MQGKFTEASGLFTKFVAFDCRPNVI-------------------------------PNVI 197
             +GK  +A  LF       C PN I                               P+V+
Sbjct: 597  KEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVL 656

Query: 198  CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA-----KG 252
             Y +II GL ++G ++     F  MK + + PD     +LI         EDA     + 
Sbjct: 657  TYNTIIYGLIREGRIDYAFWFFHQMK-KFLSPDYVTLCTLIPGVVRHGRVEDAIKVVMEF 715

Query: 253  NTSAALELHEEFVNGNGELG--VICHPDV---LSYCSII--NSLCKD---------VLVD 296
               A L+ + +F    GEL   ++   ++   +S+  I+  NS+C+D         VL  
Sbjct: 716  VHQACLQTNSQFW---GELMECILTEAEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCK 772

Query: 297  KAKELFLD------MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
            + K L          K+ GI P +  Y+ L+DG       + A +LF  ++S G  P+  
Sbjct: 773  RKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNF 832

Query: 351  SYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTL 397
            +YN L++++ K +++ +   LY EM S G  P+             ++ + +A +L+  L
Sbjct: 833  TYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYEL 892

Query: 398  HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
             +  F      +  L+DGL K+ R   A ++F+++  YG  PN V Y ++I G    G I
Sbjct: 893  MSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEI 952

Query: 458  EKAYDLLPDM-EEKIR----------ECL-------KAIELLHKMAKRYVKPDEITVSIL 499
            + A +L   M +E IR          ECL       +A++   ++    + PD ++ + +
Sbjct: 953  DFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFI 1012

Query: 500  EELLNKDENCHECMNLLPSFLSR 522
               L K     E ++L     +R
Sbjct: 1013 INGLGKSRRLDEALSLFSEMKNR 1035



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 98/392 (25%), Positives = 168/392 (42%), Gaps = 69/392 (17%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  PD V+  IL+   CK   V  AF  L  +  K   P++ T   +I GL    +  EA
Sbjct: 370 GYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEA 429

Query: 177 SGLFTKFVAFDCRPN-------------------------------VIPNVICYASIIDG 205
             L     +   +P                                ++P++    + +  
Sbjct: 430 LELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYT 489

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
           L + G +++   +F D+   G+ PD+  YN L++ Y  A       G    A +L  E +
Sbjct: 490 LAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKA-------GQIDKATQLLSEMI 542

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
           +        C PDV+   S+IN+L K   VD A ++F  +K+  + P VV Y+ L+ G  
Sbjct: 543 SKG------CEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLG 596

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
             G+I  A +LF S+   GC P+T ++N+L++  SK + V+ AL ++  M  M   P   
Sbjct: 597 KEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNP--- 653

Query: 386 CILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
                              D+  +N ++ GL +  R+  A+  F ++ ++   P+ VT  
Sbjct: 654 -------------------DVLTYNTIIYGLIREGRIDYAFWFFHQMKKF-LSPDYVTLC 693

Query: 446 VMICGLCIEGGIEKAYDLLPDMEEKIRECLKA 477
            +I G+   G +E A  ++  ME   + CL+ 
Sbjct: 694 TLIPGVVRHGRVEDAIKVV--MEFVHQACLQT 723



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 97/407 (23%), Positives = 178/407 (43%), Gaps = 58/407 (14%)

Query: 137 GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNV 196
           G+  A  AL ++    F  +  +   LI  L + G   EA  ++ + ++      + P++
Sbjct: 181 GIGRAPFALRKMTEVGFILNAYSYNGLIH-LLLPGFCNEALKVYKRMIS----EGMKPSM 235

Query: 197 ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSA 256
             Y++++  L + G   K+  L  +MK  G+ P+ + Y   IR    A   +DA G    
Sbjct: 236 KTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRARRIDDAWGIFK- 294

Query: 257 ALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV 316
             E+ +E           C PDV++Y  +I++LC    +DKAKEL++ M++    PD V 
Sbjct: 295 --EMDDEG----------CGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVT 342

Query: 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
           Y +L+D +  +G ++  ++ +  +E +G  PD  +Y  LI +  K   V+ A  +   M 
Sbjct: 343 YITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMT 402

Query: 377 SMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
           + G+ P                      +L  +N ++ GL K+ RL  A EL + +   G
Sbjct: 403 TKGIFP----------------------NLHTYNTMICGLLKARRLDEALELLENMESLG 440

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-----IREC-------------LKAI 478
            +P   +Y + I      G   KA D    M+++     I  C              +A 
Sbjct: 441 VKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAE 500

Query: 479 ELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQE 525
           ++ + + K  + PD +T ++L +  +K     +   LL   +S+  E
Sbjct: 501 DIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCE 547



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 132/327 (40%), Gaps = 54/327 (16%)

Query: 71   ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
            AL  F  M      P   ++N LL A    K       L   + + G  P+ ++ NI+++
Sbjct: 815  ALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIIS 874

Query: 131  CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
               K   ++ A      ++   FSP   T G LI GL   G+  +A  +F + + + C P
Sbjct: 875  ALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGP 934

Query: 191  NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
            N +     Y  +I+G  K G ++    LF  M   GI PD   Y  L+   C        
Sbjct: 935  NSV----IYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCIT------ 984

Query: 251  KGNTSAALELHEEF-VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
             G    A++  EE  + G         PD +SY  IIN L K   +D+A  LF +MK+RG
Sbjct: 985  -GRIDEAVQYFEELKLTG-------LDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRG 1036

Query: 310  IIPD-----------------------------------VVVYSSLIDGYCLMGRIDDAR 334
            I PD                                   V  Y++LI G+ L G  D A 
Sbjct: 1037 ISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAF 1096

Query: 335  KLFVSIESEGCIPDTSSYNTLINSYSK 361
             +F  +   GC P+T ++  L N Y +
Sbjct: 1097 SVFKKMMVVGCSPNTETFAQLPNKYPR 1123



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 71/181 (39%), Gaps = 6/181 (3%)

Query: 61   SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
             KSGE++   A   F  M+     P + S+  L+  L         +   E L   GL P
Sbjct: 947  GKSGEIDF--ACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDP 1004

Query: 121  DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
            D VS N ++N   K   + +A      +  +  SPD+ T   LI  L + GK   A  ++
Sbjct: 1005 DTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMY 1064

Query: 181  TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
             +           P+V  Y ++I G    G  ++   +F  M   G  P+   +  L   
Sbjct: 1065 EELQLVGLE----PSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQLPNK 1120

Query: 241  Y 241
            Y
Sbjct: 1121 Y 1121


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 120/475 (25%), Positives = 200/475 (42%), Gaps = 97/475 (20%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVAL--- 145
           S N+LL AL   + +     L   +  + + P+ V+  IL+N  CK   V +A       
Sbjct: 307 SCNALLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKM 366

Query: 146 --GRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF----------VAFDC----- 188
             G     +  PDV+T   LI GLC  G+  E  GL  +           V ++C     
Sbjct: 367 NGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGY 426

Query: 189 -----------------RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
                            +  V PNV+   +++DG+CK G +N     F +M+G+G+  +A
Sbjct: 427 CKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNA 486

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALE--------LHEEFVNGNGELGVICH------- 276
             Y +LIR +C   N E A       LE        ++   ++G  + G +         
Sbjct: 487 VTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSK 546

Query: 277 -------PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
                  PD++S+  +IN  C+   +D+A E+  +M++ GI PD V Y++LI  +   G 
Sbjct: 547 MKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGD 606

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE 389
              A +L   +  EG +P   +Y  LI++Y     ++EA+ ++ +M S    P N+ I  
Sbjct: 607 FSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVI-- 664

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
                              +N L++ LC+  ++  A  L   +   G +PN  T+  M  
Sbjct: 665 -------------------YNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFK 705

Query: 450 GLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLN 504
           GL  +  + KA+                 EL+ +M +    PD IT+ IL E L+
Sbjct: 706 GLQEKNWLSKAF-----------------ELMDRMTEHACNPDYITMEILTEWLS 743



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 168/368 (45%), Gaps = 34/368 (9%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           + P+ + L  L++  C+      A+  L  +++     +  +   L+  L    +F   +
Sbjct: 266 VFPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMN 325

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG-----IYPDAF 232
            L  +    D +PNV+     +  +I+ LCK   V++   +F  M G       + PD  
Sbjct: 326 TLLAEMKEMDIQPNVV----TFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVI 381

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            YN+LI   C         G     L L E   +        C P+ ++Y  +I+  CK 
Sbjct: 382 TYNTLIDGLCKV-------GRQEEGLGLVERMRSQPR-----CMPNTVTYNCLIDGYCKA 429

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
            +++ A+ELF  M   G+ P+VV  ++L+DG C  GRI+ A + F  ++ +G   +  +Y
Sbjct: 430 SMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTY 489

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDN-------SCILEAAELFRT------LHN 399
             LI ++  +  +E+A+ L+ EM+  G  PD        S + +A +L R       +  
Sbjct: 490 TALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKE 549

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
             F  D+  FN L++G C+  +L  A+E+ K++   G +P+ VTY  +I      G    
Sbjct: 550 AGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFST 609

Query: 460 AYDLLPDM 467
           A+ L+  M
Sbjct: 610 AHRLMKKM 617



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 16/198 (8%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           +P + SFN L+     K        + + +   G+ PD V+ N L++ F K    S A  
Sbjct: 553 SPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHR 612

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
            + +++++   P VVT G LI   C+ G   EA  +F    +    P   PN + Y  +I
Sbjct: 613 LMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVP---PNTVIYNILI 669

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
           + LC+   V+    L  DMK +G+ P+   +N++ +      NW       S A EL + 
Sbjct: 670 NSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFK-GLQEKNW------LSKAFELMDR 722

Query: 264 FVNGNGELGVICHPDVLS 281
                      C+PD ++
Sbjct: 723 MTEH------ACNPDYIT 734


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 112/432 (25%), Positives = 193/432 (44%), Gaps = 66/432 (15%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           +AL  +  M+     P + ++++L+ AL  K+     + L + +  +GL P+  +  I +
Sbjct: 210 EALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICI 269

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
               +   + +A+    R+  +   PD+VT   LI  LC  G+   A  LF K  A   +
Sbjct: 270 RVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHK 329

Query: 190 PNVI-------------------------------PNVICYASIIDGLCKDGFVNKVRVL 218
           P+ +                               P+V+ +  ++D LCK    ++    
Sbjct: 330 PDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFAT 389

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD 278
           F  M+ +GI P+   YN+LI     A   EDA            + ++    +GV   P 
Sbjct: 390 FDVMRKQGILPNLHTYNTLICGLLRAGRIEDAL-----------KLLDTMESVGV--QPT 436

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
             +Y + I+   K     KA E F  MK++GI+P++V  ++ +     MGR+ +A+ +F 
Sbjct: 437 AYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFN 496

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398
            +   G  PD+ +YN ++  YSK+ +V+EA++L  EMI  G  P                
Sbjct: 497 GLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEP---------------- 540

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
                 D+ V N L+D L K+ R+  AW++F ++      P VVTY  ++ GL  EG ++
Sbjct: 541 ------DVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQ 594

Query: 459 KAYDLLPDMEEK 470
           KA +L   M  K
Sbjct: 595 KAIELFESMIXK 606



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 156/319 (48%), Gaps = 29/319 (9%)

Query: 163  LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
            L+R LC   +   A  +F KF     +  + P +  Y  +I  L +  +  K   LF DM
Sbjct: 758  LVRVLCKHKRELYAYQIFDKFTK---KLGISPTLASYNCLIGELLEVHYTEKAWDLFKDM 814

Query: 223  KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
            K  G  PDAF +N L+ V+          G  +   EL++E ++        C PD ++Y
Sbjct: 815  KNVGCAPDAFTFNMLLAVH-------GKSGKITELFELYKEMISRR------CKPDAITY 861

Query: 283  CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
              +I+SL K   +DKA + F D+ S    P    Y  LIDG   +GR+++A +LF  +  
Sbjct: 862  NIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSD 921

Query: 343  EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--NSCIL-----------E 389
             GC P+ + +N LIN Y KI   E A  L+  M++ G+RPD  +  IL           E
Sbjct: 922  YGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDE 981

Query: 390  AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
            A   F  L +T  + D   +N +++GL KS R+  A  L+ ++   G  P++ TY  ++ 
Sbjct: 982  ALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLML 1041

Query: 450  GLCIEGGIEKAYDLLPDME 468
             L + G +E+A  +  +++
Sbjct: 1042 NLGLAGMVEQAKRMYEELQ 1060



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 160/362 (44%), Gaps = 39/362 (10%)

Query: 84   TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
            +P + S+N L+G L    Y      L + +  +G  PD  + N+L+    K   +++ F 
Sbjct: 785  SPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFE 844

Query: 144  ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
                ++ +   PD +T   +I  L       +A   F   V+ D RP   P    Y  +I
Sbjct: 845  LYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPT--PRT--YGPLI 900

Query: 204  DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
            DGL K G + +   LF +M   G  P+  ++N LI  Y          G+T  A +L + 
Sbjct: 901  DGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGY-------GKIGDTETACQLFKR 953

Query: 264  FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
             VN          PD+ SY  +++ LC    VD+A   F ++KS G+ PD + Y+ +I+G
Sbjct: 954  MVNEG------IRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIING 1007

Query: 324  YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
                 R+++A  L+  + + G +PD  +YN+L+ +      VE+A  +Y E+   G+ P 
Sbjct: 1008 LGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEP- 1066

Query: 384  NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                                 D+  +N L+ G   S     A+ ++K +   G  PN+ T
Sbjct: 1067 ---------------------DVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGT 1105

Query: 444  YT 445
            Y 
Sbjct: 1106 YA 1107



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 171/387 (44%), Gaps = 67/387 (17%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G +PD V+  IL++  CK     +AF     + ++   P++ T   LI GL   G+  +A
Sbjct: 362 GYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDA 421

Query: 177 SGLFTKFVAFDCRPN-------------------------------VIPNVICYASIIDG 205
             L     +   +P                                ++PN++   + +  
Sbjct: 422 LKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYS 481

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
           L + G + + + +F  ++  G+ PD+  YN +++ Y          G    A+ L  E +
Sbjct: 482 LAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKV-------GQVDEAVNLLSEMI 534

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
             NG     C PDV+   S+I+SL K   VD+A ++F  MK   + P VV Y++L+ G  
Sbjct: 535 R-NG-----CEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLG 588

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
             GR+  A +LF S+  + C P+T S+NTL++ + K ++VE AL ++ +M  M  +P   
Sbjct: 589 KEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKP--- 645

Query: 386 CILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
                              D+  +N ++ GL K  ++  A+  F +L +    P+ VT  
Sbjct: 646 -------------------DVLTYNTVIYGLIKENKVNHAFWFFHQLKK-SMHPDHVTIC 685

Query: 446 VMICGLCIEGGIEKAYDLLPDMEEKIR 472
            ++ GL   G I  A  +  D   ++R
Sbjct: 686 TLLPGLVKCGQIGDAISIARDFMYQVR 712



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 172/402 (42%), Gaps = 57/402 (14%)

Query: 137 GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNV 196
           G+      L ++ +  F  +  +   LI  L   G   EA  ++ + V+      + P++
Sbjct: 172 GLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVS----EGLKPSL 227

Query: 197 ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSA 256
             Y++++  L K      V VL  +M+  G+ P+ + +   IRV           G    
Sbjct: 228 KTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVL----------GRAGK 277

Query: 257 ALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV 316
             E +E F   + E    C PD+++Y  +I++LC    ++ AKELF+ MK+ G  PD V+
Sbjct: 278 IDEAYEIFRRMDDE---GCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVI 334

Query: 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
           Y +L+D +   G +D  ++ +  +E++G +PD  ++  L++   K    +EA + +  M 
Sbjct: 335 YITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMR 394

Query: 377 SMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
             G+ P                      +L  +N L+ GL ++ R+  A +L   +   G
Sbjct: 395 KQGILP----------------------NLHTYNTLICGLLRAGRIEDALKLLDTMESVG 432

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-----IRECLKAIELLHKMAK-RYVK 490
            +P   TY   I      G   KA +    M+ K     I  C  ++  L +M + R  K
Sbjct: 433 VQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAK 492

Query: 491 ------------PDEITVSILEELLNKDENCHECMNLLPSFL 520
                       PD +T +++ +  +K     E +NLL   +
Sbjct: 493 TMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMI 534



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 134/319 (42%), Gaps = 44/319 (13%)

Query: 71   ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
            A   F  M ++   P   +FN LL              L + + +    PD ++ NI+++
Sbjct: 807  AWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVIS 866

Query: 131  CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
               K   +  A      ++   F P   T G LI GL   G+  EA  LF +   + C+P
Sbjct: 867  SLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKP 926

Query: 191  N-------------------------------VIPNVICYASIIDGLCKDGFVNKVRVLF 219
            N                               + P++  Y  ++D LC  G V++    F
Sbjct: 927  NCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYF 986

Query: 220  LDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDV 279
             ++K  G+ PD   YN +I       N          AL L+ E  N     G++  PD+
Sbjct: 987  NELKSTGLDPDFIAYNRII-------NGLGKSQRMEEALALYNEMRNR----GIV--PDL 1033

Query: 280  LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
             +Y S++ +L    +V++AK ++ +++  G+ PDV  Y++LI GY L    + A  ++ +
Sbjct: 1034 YTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKN 1093

Query: 340  IESEGCIPDTSSYNTLINS 358
            +  +GC P+  +Y  L N 
Sbjct: 1094 MMVDGCNPNIGTYAQLPNQ 1112



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 105/249 (42%), Gaps = 31/249 (12%)

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           V+    +F  M+ + I  D+  Y ++     + G +     +   +   G + +  SYN 
Sbjct: 138 VEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNG 197

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPD---NSCILEAAE----------LFRTLHNTK 401
           LI+   +     EAL +Y  M+S G++P     S ++ A            L + + +  
Sbjct: 198 LIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLG 257

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
              ++  F   +  L ++ ++  A+E+F+++   G  P++VTYTV+I  LC  G +E A 
Sbjct: 258 LRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAK 317

Query: 462 DLLPDMEEKIRECLKAI------------------ELLHKMAKRYVKPDEITVSILEELL 503
           +L   M+    +  + I                  E   +M      PD +T +IL ++L
Sbjct: 318 ELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVL 377

Query: 504 NKDENCHEC 512
            K  +  E 
Sbjct: 378 CKARDFDEA 386


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 112/440 (25%), Positives = 197/440 (44%), Gaps = 58/440 (13%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P   S+  L+ AL   +     + L   + + G+  D V+   L+   C    V  A   
Sbjct: 113 PNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVEL 172

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           +G +      P+VV    L++G C  G++ +   +F +         + P+V+ Y  +ID
Sbjct: 173 MGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEM----SEKGIEPDVVMYTGLID 228

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
            LCK G   K   +   M  RG+ P+   YN LI   C        +G+   A+ + ++ 
Sbjct: 229 SLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMC-------KEGSVKEAIGVLKKM 281

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM-KSRGII-PDVVVYSSLID 322
                E GV   PDV++Y ++I  L   + +D+A  L  +M + + I+ P+VV ++S+I 
Sbjct: 282 ----SEKGVA--PDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQ 335

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
           G C +GR+  A ++   +E  GC+ +  +YN LI    ++ KV +A+ L  EM S+G+ P
Sbjct: 336 GLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEP 395

Query: 383 DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
           D+                        ++ L+ G CK W++  A +L   +   G EP + 
Sbjct: 396 DS----------------------FTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELF 433

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEE-----------------KIRECLKAIELLHKMA 485
            Y  ++  +C +G +E+A +L  +M+                  K  +   A ELL  + 
Sbjct: 434 HYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIV 493

Query: 486 KRYVKPDEITVSILEELLNK 505
              + PD +T SI+  +  K
Sbjct: 494 DEGLTPDAVTYSIVINMFAK 513



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 114/434 (26%), Positives = 190/434 (43%), Gaps = 47/434 (10%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ P+ V  + L+  +CK     D       +  K   PDVV    LI  LC  GK  +A
Sbjct: 180 GIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKA 239

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
            G+    V    R  + PNV+ Y  +I+ +CK+G V +   +   M  +G+ PD   YN+
Sbjct: 240 HGVMDMMV----RRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNT 295

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI+     +  ++A       + L EE V G      I  P+V+++ S+I  LC    + 
Sbjct: 296 LIKGLSDVLEMDEA-------MWLLEEMVRGKN----IVKPNVVTFNSVIQGLCDIGRMR 344

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A ++   M+  G + ++V Y+ LI G   + ++  A +L   + S G  PD+ +Y+ LI
Sbjct: 345 QAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILI 404

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRP-------------DNSCILEAAELFRTLHNTKFE 403
             + K+ +V+ A  L   M   G+ P             +   +  A  LF  + N  F 
Sbjct: 405 KGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNN-FP 463

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
           LD+  ++ ++ G CK+  L++A EL K +   G  P+ VTY+++I      G +E A  +
Sbjct: 464 LDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGV 523

Query: 464 LPDME------------------EKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505
           L  M                       E  K +EL+ +M  + +  D   +S L   L  
Sbjct: 524 LKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITKNIALDSKIISTLSTSLVA 583

Query: 506 DENCHECMNLLPSF 519
                  +  LP F
Sbjct: 584 SNEGKALLQSLPDF 597



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 171/385 (44%), Gaps = 46/385 (11%)

Query: 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV 215
           D V+   ++  LC +G    A  L  + ++ +  P   PN + Y  ++  LC D   ++ 
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGALL-RAMSLEPHPACRPNAVSYTVLMRALCADRLADQA 134

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
             L   M+  G+  D   Y +LIR  C A            A+EL  E      E G+  
Sbjct: 135 VGLLRSMRSAGVRADVVTYGTLIRGLCDA-------AEVDKAVELMGEMC----ESGI-- 181

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
            P+V+ Y S++   CK    +   ++F++M  +GI PDVV+Y+ LID  C +G+   A  
Sbjct: 182 EPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHG 241

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCIL--- 388
           +   +   G  P+  +YN LIN   K   V+EA+ +  +M   GV PD    N+ I    
Sbjct: 242 VMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLS 301

Query: 389 ------EAAELFRTLHNTK--FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
                 EA  L   +   K   + ++  FN ++ GLC   R+R A+++   +   G   N
Sbjct: 302 DVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVN 361

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILE 500
           +VTY ++I GL                  ++ +  KA+EL+ +M    ++PD  T SIL 
Sbjct: 362 LVTYNLLIGGLL-----------------RVHKVRKAMELMDEMTSLGLEPDSFTYSILI 404

Query: 501 ELLNKDENCHECMNLLPSFLSRNQE 525
           +   K        +LL +   R  E
Sbjct: 405 KGFCKMWQVDRAEDLLSTMRDRGIE 429


>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
          Length = 991

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 121/444 (27%), Positives = 191/444 (43%), Gaps = 75/444 (16%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GLLPD V+ N ++  +CK   ++ A      +L     P+  T   L+ G C  G+  +A
Sbjct: 178 GLLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGYCRTGELRKA 237

Query: 177 SGLFTKFVAFDCRPNVI-------------------------------PNVICYASIIDG 205
             LF       C+ N                                 PNV  +  +I G
Sbjct: 238 CWLFLMMPLMGCQRNEYSYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISG 297

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
           LCK G V   R+LF  M   G+ P    YN++I  Y          G  + AL++ +E +
Sbjct: 298 LCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGY-------SKLGRMNDALKI-KELM 349

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
             NG     CHPD  +Y ++I  LC D   ++A+EL  +    G  P VV +++LI+GYC
Sbjct: 350 EKNG-----CHPDDWTYNTLIYGLC-DQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYC 403

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP--- 382
           +  + DDA ++   + S  C  D   +  LINS  K ++++EA  L  E+ + G+ P   
Sbjct: 404 MAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVI 463

Query: 383 ------DNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
                 D  C    +  A E+ + +     + +   +N L+ GL K  +L  A  L  K+
Sbjct: 464 TYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKM 523

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPD 492
            + G  PNV+TYT ++ G C E   + A+ L   ME+                   +KPD
Sbjct: 524 QKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQN-----------------GLKPD 566

Query: 493 EITVSILEELLNKDENCHECMNLL 516
           E   ++L + L K     E  + +
Sbjct: 567 EHAYAVLTDALCKAGRAEEAYSFI 590



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 115/431 (26%), Positives = 190/431 (44%), Gaps = 66/431 (15%)

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           S  IL+   C+   V +A V    + R   SP+V     LI GLC  G+  +A  LF   
Sbjct: 255 SYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLF--- 311

Query: 184 VAFDCRPN--VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
              D  P   V+P+V+ Y ++I G  K G +N    +   M+  G +PD + YN+LI   
Sbjct: 312 ---DAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGL 368

Query: 242 CCAVNWEDAKGNTSAALE-----------------LHEEFVNG----NGELGVICHPDVL 280
           C     E  +   +A  E                 + E+F +     N  +   C  D+ 
Sbjct: 369 CDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQ 428

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
            +  +INSL K   + +AKEL  ++ + G++P+V+ Y+S+IDGYC  G++D A ++   +
Sbjct: 429 VFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMM 488

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNT 400
           E +GC P+  +YN+L+    K +K+ +A++L  +M   G+ P                  
Sbjct: 489 ERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIP------------------ 530

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
               ++  +  L+ G C      +A+ LF+ + + G +P+   Y V+   LC  G  E+A
Sbjct: 531 ----NVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEA 586

Query: 461 YDL---------------LPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505
           Y                 L D   K      A  L+ +M      PD  T S+L   L K
Sbjct: 587 YSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCK 646

Query: 506 DENCHECMNLL 516
            +  +E + +L
Sbjct: 647 QKRLNEALPIL 657



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 116/455 (25%), Positives = 188/455 (41%), Gaps = 64/455 (14%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           + +DAL   N M+  +    +  F  L+ +L  K        L   ++  GL+P+ ++  
Sbjct: 407 KFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYT 466

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            +++ +CK   V  A   L  + R    P+  T   L+ GL    K  +A  L TK    
Sbjct: 467 SIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQ-- 524

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             +  +IPNVI Y +++ G C +   +    LF  M+  G+ PD   Y  L    C A  
Sbjct: 525 --KDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGR 582

Query: 247 WEDA-------------------------KGNTSAALELHEEFVNGNGELGVICHPDVLS 281
            E+A                          GNT  A  L E  ++        C PD  +
Sbjct: 583 AEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEG------CTPDSYT 636

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y  ++++LCK   +++A  +   M  RGI   +  Y+ LID     G+ D A++++  + 
Sbjct: 637 YSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMT 696

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------NSC-----IL 388
           S G  P  ++Y   INSY K  ++E+A  L  +M   GV PD        + C     I 
Sbjct: 697 SSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYID 756

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKS-------------WRLRS---AWELFKKL 432
            A    + +     E +   +  L+  L K              W L      W+L +++
Sbjct: 757 RAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERM 816

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            ++G  P V TY+ +I G C  G +E+A  LL  M
Sbjct: 817 VKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHM 851



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 178/401 (44%), Gaps = 41/401 (10%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           TP + +F +L+      + + + + +  ++ +     D      L+N   K   + +A  
Sbjct: 389 TPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKE 448

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
            L  I      P+V+T   +I G C  GK   A  +        C+PN       Y S++
Sbjct: 449 LLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWT----YNSLM 504

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
            GL KD  ++K   L   M+  GI P+   Y +L++  C   +++    N     E+ E+
Sbjct: 505 YGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFD----NAFRLFEMMEQ 560

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
             NG         PD  +Y  + ++LCK     +A+E +  +  +G+    V Y++LIDG
Sbjct: 561 --NG-------LKPDEHAYAVLTDALCK---AGRAEEAYSFIVRKGVALTKVYYTTLIDG 608

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           +   G  D A  L   +  EGC PD+ +Y+ L+++  K +++ EAL +  +M   G++  
Sbjct: 609 FSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIK-- 666

Query: 384 NSCIL-----------------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
             C +                  A  ++  + ++  +   T +   ++  CK  RL  A 
Sbjct: 667 --CTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAE 724

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +L  K+ R G  P+VVTY ++I G    G I++A+  L  M
Sbjct: 725 DLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRM 765



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 89/378 (23%), Positives = 146/378 (38%), Gaps = 55/378 (14%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L ER+   G  PD  + ++L++  CK   +++A   L ++  +     +     LI  + 
Sbjct: 621 LIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEML 680

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
            +GK   A  ++ +  +   +P+       Y   I+  CK+G +     L L M+  G+ 
Sbjct: 681 REGKHDHAKRMYNEMTSSGHKPSATT----YTVFINSYCKEGRLEDAEDLILKMEREGVA 736

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           PD   YN LI          D  G+      +   F      +G  C P+  +YC ++  
Sbjct: 737 PDVVTYNILI----------DGCGHMGY---IDRAFSTLKRMVGASCEPNYWTYCLLLKH 783

Query: 289 LCKDVL----------------VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
           L K  L                +D   +L   M   G+ P V  YSSLI G+C  GR+++
Sbjct: 784 LLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEE 843

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392
           A  L   +  +G  P+   Y  LI      +  E+ALS    M   G +P          
Sbjct: 844 ACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQP---------- 893

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
                        L  +  LV GLC          LF  L   G   + V + ++  GL 
Sbjct: 894 ------------QLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLL 941

Query: 453 IEGGIEKAYDLLPDMEEK 470
             G ++  + +L  ME++
Sbjct: 942 KAGYVDICFQMLSIMEKR 959



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 13/201 (6%)

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y   + SL +  + +    ++  +   G++PD V Y+++I  YC  G +  A + F  + 
Sbjct: 151 YNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLL 210

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN-------------SCIL 388
             G  P+T + N L+  Y +  ++ +A  L+  M  MG + +               C+ 
Sbjct: 211 EGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCEAKCVR 270

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
           EA  LF  +       ++  F  L+ GLCKS R+  A  LF  +P+ G  P+V+TY  MI
Sbjct: 271 EALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMI 330

Query: 449 CGLCIEGGIEKAYDLLPDMEE 469
            G    G +  A  +   ME+
Sbjct: 331 VGYSKLGRMNDALKIKELMEK 351



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 111/259 (42%), Gaps = 27/259 (10%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVT----LGCLIRGLCMQGK 172
           G+ PD V+ NIL++    M  +  AF  L R++     P+  T    L  L++G     +
Sbjct: 734 GVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVR 793

Query: 173 FTEASGLFTKFVAFDCRPNVI---------PNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
             + SG++   +  D    ++         P V  Y+S+I G CK G + +  +L   M 
Sbjct: 794 SVDTSGMWN-LIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMC 852

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
           G+G+ P+  +Y  LI+  CC   +           E    FV+   E G    P + SY 
Sbjct: 853 GKGLSPNEDIYTLLIKC-CCDTKF----------FEKALSFVSIMSECGF--QPQLESYR 899

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
            ++  LC +   +K K LF D+   G   D V +  L DG    G +D   ++   +E  
Sbjct: 900 LLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQMLSIMEKR 959

Query: 344 GCIPDTSSYNTLINSYSKI 362
            C   + +Y  + N   ++
Sbjct: 960 YCCISSQTYALVTNKMHEV 978


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 185/396 (46%), Gaps = 68/396 (17%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G +PD V+ N L+   C    +S+AFV    + +    P+V++   L+ GLC  G+  EA
Sbjct: 139 GCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEA 198

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L+ + V   C    +P+++ Y S + GLCK   V +       M  +G   DA  +++
Sbjct: 199 CRLWEEMVEKSC----VPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFST 254

Query: 237 LIRVYCCAVNWEDAK----------GNTSAALELHEEFVNGN----GEL----------- 271
           +I + C   + E+A+          G    A +  EE ++ N     EL           
Sbjct: 255 VIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKS 314

Query: 272 -----GVI------------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
                GV+            C P++ +Y  ++++LCK   +D+A+EL  +M + G+ PDV
Sbjct: 315 KRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDV 374

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           V YS+L+DG C +G++D A  L   +  EG  PD+ +  +++N+ SK  KV+ ALS    
Sbjct: 375 VTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLET 434

Query: 375 MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
           M + G  P                      DL  +N L+DGLCK+ R+  A     K+  
Sbjct: 435 MKARGSTP----------------------DLVTYNTLLDGLCKAGRIDEAITFLAKMVA 472

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
               P+V +YT++I  LC  G    A+ +  +M ++
Sbjct: 473 AKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKR 508



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 119/448 (26%), Positives = 194/448 (43%), Gaps = 73/448 (16%)

Query: 130 NCFCKMIGVSDA----FVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           NCF   +  ++A    +    ++ R+ + PD  T   ++RGLC  G+  +A  L  +   
Sbjct: 42  NCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLR- 100

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM-KGRGIYPDAFVYNSLIRVYCCA 244
                 V  NVI Y+ +IDG CK   V+    +F  M  G G  PD   +NSL++  C  
Sbjct: 101 ---ESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLC-- 155

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                +    S A  L E            C P+V+SY ++++ LCK   +D+A  L+ +
Sbjct: 156 -----SGERMSEAFVLFEYMAKAG------CEPNVISYSTLLDGLCKAGRLDEACRLWEE 204

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M  +  +PD+V Y+S + G C   R+ +A      + ++G   D  +++T+I    K   
Sbjct: 205 MVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGH 264

Query: 365 VEEALSLYGEMISMGVRPDNSCIL----------EAAELFRTLHNTK------------F 402
            EEA +   E +      D +C             +AELF TL +              F
Sbjct: 265 AEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLF 324

Query: 403 EL-----------DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
           +            +L  +N +VD LCK+ +L  A EL  ++  YG  P+VVTY+ ++ GL
Sbjct: 325 QRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGL 384

Query: 452 CIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDE 493
           C  G +++A DLL +M +                  K  +   A+  L  M  R   PD 
Sbjct: 385 CKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDL 444

Query: 494 ITVSILEELLNKDENCHECMNLLPSFLS 521
           +T + L + L K     E +  L   ++
Sbjct: 445 VTYNTLLDGLCKAGRIDEAITFLAKMVA 472



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 121/470 (25%), Positives = 194/470 (41%), Gaps = 79/470 (16%)

Query: 63  SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF 122
           SGE  +++A   F YM      P + S+++LL  L           L E +     +PD 
Sbjct: 156 SGE-RMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDL 214

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG---- 178
           V+    +   CK   V++A     +++ K    D V    +I  LC +G   EA      
Sbjct: 215 VAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIE 274

Query: 179 ----------------------------LFTKFVAFDCR----PNVI------------- 193
                                       LF   +   C+    P+ +             
Sbjct: 275 HLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFY 334

Query: 194 --PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
             PN+  Y  ++D LCK   +++ + L  +M   G+ PD   Y++L+   C         
Sbjct: 335 CPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLC-------KL 387

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
           G    A +L EE      + GV   PD  +  SI+N+L K   VD A      MK+RG  
Sbjct: 388 GKLDRACDLLEEM----SKEGVF--PDSFTDASILNALSKAGKVDYALSHLETMKARGST 441

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           PD+V Y++L+DG C  GRID+A      + +  C PD  SY  +I +  +  +   A ++
Sbjct: 442 PDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAI 501

Query: 372 YGEMISMGVRPDN---SCILEAAELFRT-LHNTKFEL--------DLTVFNCLVDGLCKS 419
           + EM+  GV PD      +L+   L R  L +   EL        D  +   ++DGLCK+
Sbjct: 502 FQEMVKRGVLPDTVLYHSLLDG--LARNGLEDLALELLKTSLCKPDFVMHKMVLDGLCKA 559

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
            +   A E+ +++   G   +  TY  ++ GL   G ++KA  L+ D  E
Sbjct: 560 GKAEDACEVVERMADAGFPADAFTYISVVSGLRKLGKVDKARQLVDDASE 609



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 181/414 (43%), Gaps = 72/414 (17%)

Query: 142 FVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYAS 201
           F  LGR  +K +   V T  C +  L    K       + KF     R    P+   Y+ 
Sbjct: 25  FDWLGR--QKGYQHSVFTYNCFLDAL---AKANAGQLAYEKFQQMQ-RRGYPPDDFTYSI 78

Query: 202 IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261
           ++ GLCK G ++K + L   ++  G+  +   Y+ +I   C A   +DA       LE+ 
Sbjct: 79  VLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDA-------LEIF 131

Query: 262 EEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
           +   +G G     C PDV+++ S++  LC    + +A  LF  M   G  P+V+ YS+L+
Sbjct: 132 KTMSSGGG-----CVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLL 186

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
           DG C  GR+D+A +L+  +  + C+PD  +Y + +    K  +V EA     +M++ G +
Sbjct: 187 DGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSK 246

Query: 382 PD------------------------------NSCILEAAELFRTLHNTKFELDLTVFNC 411
            D                              +  + EA + F  + +        +FN 
Sbjct: 247 ADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNT 306

Query: 412 LVDGLCKSWRLRSAWELFKKLPR----YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           L+  +CKS RL     LF+++      Y P PN+ TY +M+  LC    +++A +L+ +M
Sbjct: 307 LIHAVCKSKRLPDGVLLFQRMKSMKEFYCP-PNLETYNIMVDNLCKAKQLDEAQELVNEM 365

Query: 468 EE------------------KIRECLKAIELLHKMAKRYVKPDEIT-VSILEEL 502
                               K+ +  +A +LL +M+K  V PD  T  SIL  L
Sbjct: 366 ANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNAL 419


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 169/319 (52%), Gaps = 43/319 (13%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P+V+ Y+++I+G C  G + KV  L  +M+ +G+ P+ + YNS+I + C +   +DA+  
Sbjct: 8   PDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAE-- 65

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
                 +  E +N     G++  PD + Y ++I+  CK   +  A +LF +M+ + I+PD
Sbjct: 66  -----RVLREMINQ----GIV--PDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPD 114

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
            + Y+++I G C  G++ +A K+F  + S G  PD  +Y TLI+ Y K  ++E+A SL+ 
Sbjct: 115 FIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHN 174

Query: 374 EMISMGVRP---------DNSCIL----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           +M+  G+ P         D  C L     A EL   +     +L++  +N LV+GLCKS 
Sbjct: 175 QMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSG 234

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIEL 480
            +R A +L +++   G  P+ +T+T ++   C  G                 E +KA EL
Sbjct: 235 NIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTG-----------------EMVKAHEL 277

Query: 481 LHKMAKRYVKPDEITVSIL 499
           L +M  R ++P  IT ++L
Sbjct: 278 LREMLDRGLQPTVITFNVL 296



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 108/375 (28%), Positives = 174/375 (46%), Gaps = 30/375 (8%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L + +   GL P+  + N ++   CK   V DA   L  ++ +   PD V    LI G C
Sbjct: 32  LIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFC 91

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
             G    A  LF +      +  ++P+ I Y ++I GLC+ G + +   +F  M  RG+ 
Sbjct: 92  KLGNIQAAYKLFDEME----KQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVE 147

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           PD   Y +LI  YC         G    A  LH + V           P+V++Y ++ + 
Sbjct: 148 PDEVTYTTLIDGYC-------KSGEMEKAFSLHNQMVQSG------LTPNVVTYTALADG 194

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           LCK   VD A EL  +M  +G+  ++  Y+SL++G C  G I  A KL   +E  G  PD
Sbjct: 195 LCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPD 254

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------NSCILEAAE-LFR 395
           T ++ TL+++Y K  ++ +A  L  EM+  G++P              S +LE  E L  
Sbjct: 255 TITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLA 314

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            +       + T +N L+   C    +R   E++K +   G  P+  TY ++I G C   
Sbjct: 315 WMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKAR 374

Query: 456 GIEKAYDLLPDMEEK 470
            +++A+ L  +M EK
Sbjct: 375 NMKEAWFLHKEMAEK 389



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 111/377 (29%), Positives = 173/377 (45%), Gaps = 48/377 (12%)

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN 213
           +PDVV+   +I G C+ G+  +   L  +         + PN+  Y SII  LCK G V+
Sbjct: 7   APDVVSYSTVINGYCLGGELQKVLKLIQEMQM----KGLKPNLYTYNSIILLLCKSGKVD 62

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
               +  +M  +GI PD  VY +LI  +C         GN  AA +L +E      E   
Sbjct: 63  DAERVLREMINQGIVPDTVVYTTLIDGFC-------KLGNIQAAYKLFDEM-----EKQR 110

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
           I  PD ++Y ++I  LC+   + +A ++F  M SRG+ PD V Y++LIDGYC  G ++ A
Sbjct: 111 IV-PDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKA 169

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---------- 383
             L   +   G  P+  +Y  L +   K+ +V+ A  L  EM   G++ +          
Sbjct: 170 FSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNG 229

Query: 384 ---NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
              +  I +A +L   +       D   F  L+D  CK+  +  A EL +++   G +P 
Sbjct: 230 LCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPT 289

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDMEEK-----------------IRECLK-AIELLH 482
           V+T+ V++ G C+ G +E    LL  M EK                 IR  ++   E+  
Sbjct: 290 VITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYK 349

Query: 483 KMAKRYVKPDEITVSIL 499
            M  R V PD  T +IL
Sbjct: 350 GMCARGVMPDSNTYNIL 366



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 184/412 (44%), Gaps = 72/412 (17%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIGLLPDFVS 124
           EL   L     M      P + ++NS++  L  +GK      + L E +N  G++PD V 
Sbjct: 25  ELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERV-LREMINQ-GIVPDTVV 82

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
              L++ FCK+  +  A+     + ++   PD +    +I GLC  GK  EA  +F K  
Sbjct: 83  YTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMF 142

Query: 185 AFDCRPNVI-------------------------------PNVICYASIIDGLCKDGFVN 213
           +    P+ +                               PNV+ Y ++ DGLCK G V+
Sbjct: 143 SRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVD 202

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF-VNGNGELG 272
               L  +M G+G+  +   YNSL+   C         GN   A++L EE  V G     
Sbjct: 203 TANELLHEMCGKGLQLNICTYNSLVNGLC-------KSGNIRQAVKLMEEMEVAG----- 250

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
              +PD +++ +++++ CK   + KA EL  +M  RG+ P V+ ++ L++G+C+ G ++D
Sbjct: 251 --MYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLED 308

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392
             +L   +  +G +P+T++YN+L+  Y     +     +Y  M + GV PD++       
Sbjct: 309 GERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSN------- 361

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
                           +N L+ G CK+  ++ AW L K++   G      +Y
Sbjct: 362 ---------------TYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSY 398



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 90/295 (30%), Positives = 137/295 (46%), Gaps = 52/295 (17%)

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
           MK RG  PD   Y+++I  YC         G     L+L +E             P++ +
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLG-------GELQKVLKLIQEMQMKG------LKPNLYT 47

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y SII  LCK   VD A+ +  +M ++GI+PD VVY++LIDG+C +G I  A KLF  +E
Sbjct: 48  YNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEME 107

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK 401
            +  +PD  +Y  +I    +  K+ EA  ++ +M S GV PD                  
Sbjct: 108 KQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDE----------------- 150

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
                  +  L+DG CKS  +  A+ L  ++ + G  PNVVTYT +  GLC  G ++ A 
Sbjct: 151 -----VTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTAN 205

Query: 462 DLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                            ELLH+M  + ++ +  T + L   L K  N  + + L+
Sbjct: 206 -----------------ELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLM 243


>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 127/476 (26%), Positives = 194/476 (40%), Gaps = 99/476 (20%)

Query: 71  ALCFFNY----------MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           ALC FN           M      P    + +L+ AL+ K      + L E +  +G +P
Sbjct: 227 ALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMP 286

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC------------ 168
           D  + N +++  CK+  + DA   + R+L + F PD +T G L+ GLC            
Sbjct: 287 DVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKIL 346

Query: 169 -------------------MQGKFTEASGLFTK-FVAFDCRPNVI--------------- 193
                              M G+  EA     +  + F  +P++                
Sbjct: 347 IKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSL 406

Query: 194 ----------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
                           PNVI YA +++GLCK G + +  ++  +M  RG+  ++ +YN L
Sbjct: 407 SFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCL 466

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           I   C        K     AL L  E           C PD+ +Y S+I  LCK   +D+
Sbjct: 467 ICALC-------RKEKVHVALNLLSEMCTKG------CKPDLFTYNSLIYGLCKVDRIDE 513

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A  LF +M   G + + V Y++LI      G    A  L   +   GC  D  +YN LI 
Sbjct: 514 AFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIK 573

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDN-SC------------ILEAAELFRTLHNTKFEL 404
           ++ K+  +E+ L LY +MI  G+  D  SC            +  A E  R   N  F  
Sbjct: 574 AFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVP 633

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
           D+  +N +++GLCK  R++ A  LF +L   G  P+  TY   I   C EG +  A
Sbjct: 634 DIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDA 689



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 152/333 (45%), Gaps = 59/333 (17%)

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
           V P V  +  ++  LC    V+    L  DM   G  P++ VY +LI            K
Sbjct: 214 VSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHAL-------SQK 266

Query: 252 GNTSAALELHEE-FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
              S AL+L EE FV G       C PDV ++  +I+ LCK   +  A +L   M  RG 
Sbjct: 267 NQVSEALKLLEEMFVMG-------CMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGF 319

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
            PD + Y  L+ G C +G++++ARK+ + I      P+ +  NTLIN Y    +++EA S
Sbjct: 320 YPDNMTYGFLLHGLCRIGKLNEARKILIKIPC----PNNAILNTLINGYVMSGQLKEAQS 375

Query: 371 LYGE-MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
              E MI+ G +PD                      +  +N L+ GLCK   L  A +L 
Sbjct: 376 FLNETMINFGFQPD----------------------IFTYNILMHGLCKEGSLSFARDLV 413

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYV 489
            ++ R G EPNV+TY +++ GLC  G +E+A                   +LH+M+ R +
Sbjct: 414 NEMSRRGCEPNVITYAILVNGLCKAGLLEEAG-----------------LVLHEMSARGL 456

Query: 490 KPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
             + +  + L   L + E  H  +NLL    ++
Sbjct: 457 TINSVIYNCLICALCRKEKVHVALNLLSEMCTK 489



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 163/351 (46%), Gaps = 42/351 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G +P+ +    L++   +   VS+A   L  +      PDV T   +I GLC   K  +A
Sbjct: 248 GCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDA 307

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
           + L  + +         P+ + Y  ++ GLC+ G +N+ R + + +      P+  + N+
Sbjct: 308 TKLVDRMLL----RGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIP----CPNNAILNT 359

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI  Y  +   ++A+        L+E  +N   +      PD+ +Y  +++ LCK+  + 
Sbjct: 360 LINGYVMSGQLKEAQS------FLNETMINFGFQ------PDIFTYNILMHGLCKEGSLS 407

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A++L  +M  RG  P+V+ Y+ L++G C  G +++A  +   + + G   ++  YN LI
Sbjct: 408 FARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLI 467

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
            +  + EKV  AL+L  EM + G +P                      DL  +N L+ GL
Sbjct: 468 CALCRKEKVHVALNLLSEMCTKGCKP----------------------DLFTYNSLIYGL 505

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           CK  R+  A+ LF  +   G   N VTY  +I  L   G  +KA  L+ DM
Sbjct: 506 CKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDM 556



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/269 (33%), Positives = 124/269 (46%), Gaps = 19/269 (7%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL  + V  N L+   C+   V  A   L  +  K   PD+ T   LI GLC   +  EA
Sbjct: 455 GLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEA 514

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             LF   +        + N + Y ++I  L + G   K   L  DM  RG   D   YN 
Sbjct: 515 FRLFHNMLL----DGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNG 570

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFV-NGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           LI+ +C         GN    LEL+E+ + +G G        D +S   +IN LCK   V
Sbjct: 571 LIKAFC-------KVGNIEKGLELYEQMIMDGLG-------ADTISCNIMINGLCKVGKV 616

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           D A E   D  +RG +PD+V Y+S+++G C +GRI +A  LF  ++ EG  PD  +YNT 
Sbjct: 617 DNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTF 676

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDN 384
           I+   K   V +A   +   I  G  P N
Sbjct: 677 ISWQCKEGMVNDACLFFYRGIENGFVPSN 705



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/351 (29%), Positives = 154/351 (43%), Gaps = 81/351 (23%)

Query: 218 LFLDMKGRGIYPDAFVYN----------------SLIR------------VYCCAVNWED 249
           +F DM  +G+ P  F +                 SL+R            VY   ++   
Sbjct: 205 VFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALS 264

Query: 250 AKGNTSAALELHEE-FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
            K   S AL+L EE FV G       C PDV ++  +I+ LCK   +  A +L   M  R
Sbjct: 265 QKNQVSEALKLLEEMFVMG-------CMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLR 317

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G  PD + Y  L+ G C +G++++ARK+ + I      P+ +  NTLIN Y    +++EA
Sbjct: 318 GFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPC----PNNAILNTLINGYVMSGQLKEA 373

Query: 369 LSLYGE-MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
            S   E MI+ G +P                      D+  +N L+ GLCK   L  A +
Sbjct: 374 QSFLNETMINFGFQP----------------------DIFTYNILMHGLCKEGSLSFARD 411

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-------IRECL----- 475
           L  ++ R G EPNV+TY +++ GLC  G +E+A  +L +M  +       I  CL     
Sbjct: 412 LVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALC 471

Query: 476 ------KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
                  A+ LL +M  +  KPD  T + L   L K +   E   L  + L
Sbjct: 472 RKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNML 522



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 82/176 (46%), Gaps = 4/176 (2%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            +++A   F+ M+         ++N+L+ AL  +  +   + L   +   G   D ++ N
Sbjct: 510 RIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYN 569

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+  FCK+  +        +++      D ++   +I GLC  GK   A     +F+  
Sbjct: 570 GLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNA----FEFLRD 625

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
                 +P+++ Y S+++GLCK G + +   LF  ++  G+ PDAF YN+ I   C
Sbjct: 626 AINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQC 681



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 106/261 (40%), Gaps = 47/261 (18%)

Query: 260 LHEEFVNGNGELGVICHPDVLSYCSI--INSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
           L E F    G+ G  CH   + Y  I  + ++ K  L+DK   L + MK  GI+    ++
Sbjct: 95  LLEIFERVGGQKGY-CHTFDVYYVFINKLGAIGKFKLIDK---LLMQMKEEGIVFRESIF 150

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEG-CIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
             ++  Y   G+   A +L + + +   C P   SY+ ++         + A +++ +M+
Sbjct: 151 MIIMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFKSYDLVLEILVTGNCPQVATNVFYDML 210

Query: 377 SMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
           S GV P                 T F      F  ++  LC    + SA  L + + ++G
Sbjct: 211 SKGVSP-----------------TVF-----TFGIVMKALCMFNEVDSACSLLRDMTKHG 248

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLL---------PDMEE---------KIRECLKAI 478
             PN + Y  +I  L  +  + +A  LL         PD++          K+ +   A 
Sbjct: 249 CVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDAT 308

Query: 479 ELLHKMAKRYVKPDEITVSIL 499
           +L+ +M  R   PD +T   L
Sbjct: 309 KLVDRMLLRGFYPDNMTYGFL 329


>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 687

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 180/398 (45%), Gaps = 56/398 (14%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           L+PD VS N L+  + ++  + +AF+    +  +  +P VVT   LI GLC  G    A 
Sbjct: 338 LMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAM 397

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            L  + +     P+  P+V  + + + G CK G +   + LF +M  RG+ PD F Y   
Sbjct: 398 RLKDEMIKHG--PD--PDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAY--- 450

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
                  +  E   G+ S A  + EE       L     PD+++Y   I+ L K   + +
Sbjct: 451 ----ITRIVGELKLGDPSKAFGMQEEM------LARGFPPDLITYNVFIDGLHKLGNLKE 500

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A EL   M   G++PD V Y+S+I  + + G +  AR LF+ + S+G  P   +Y  LI+
Sbjct: 501 ASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTVLIH 560

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
           SY+   +++ A+  + EM   GV P+                      +  +N L++GLC
Sbjct: 561 SYAVRGRLKLAILHFFEMHEKGVHPN----------------------VITYNALINGLC 598

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKA 477
           K  ++  A+  F ++   G  PN  TYT++I   C  G  ++A  L  DM +        
Sbjct: 599 KVRKMDQAYNFFAEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLD-------- 650

Query: 478 IELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
                    R ++PD  T   L + LNKD   H   +L
Sbjct: 651 ---------REIQPDSCTHRSLLKHLNKDYKLHVVRHL 679



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 155/345 (44%), Gaps = 53/345 (15%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P V+ Y +++D  CK G V +   L   M+  G  P+   YN L       VN     G 
Sbjct: 200 PTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVL-------VNGLSHSGE 252

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
              A EL ++ +    E+       V +Y  +I   C+   +++A  L  +M SRG +P 
Sbjct: 253 MEQAKELIQDMLRLGLEV------SVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPT 306

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           VV Y++++ G C  GR+ DARKL   + ++  +PD  SYNTLI  Y+++  + EA  L+ 
Sbjct: 307 VVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFA 366

Query: 374 EMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
           E+    + P                       +  +N L+DGLC+   L  A  L  ++ 
Sbjct: 367 ELRYRSLAP----------------------SVVTYNTLIDGLCRLGDLDVAMRLKDEMI 404

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM------------------EEKIRECL 475
           ++GP+P+V T+T  + G C  G +  A +L  +M                  E K+ +  
Sbjct: 405 KHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPS 464

Query: 476 KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
           KA  +  +M  R   PD IT ++  + L+K  N  E   L+   L
Sbjct: 465 KAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKML 509


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 196/420 (46%), Gaps = 44/420 (10%)

Query: 51  TKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLS 110
           T ++ +L  NS+        AL F   M+     P      +L+G L  +  + + + L 
Sbjct: 425 TTIIHWLCMNSR-----FESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELW 479

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
            RL   G   + V+ N L++  CK   + +A   L ++L + F  D +T   LI G C +
Sbjct: 480 FRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKE 539

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           GK  E   L  + V    +  + P+   Y  +I G+C+ G +++   L+ + K R + P+
Sbjct: 540 GKVEEGFKLRGEMV----KQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPN 595

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
            + Y  +I  YC A   E+ +       +L  E +  N EL  +       Y ++I + C
Sbjct: 596 VYTYGVMIDGYCKADKIEEGE-------KLFTELLTQNLELNSVV------YNTLIRAYC 642

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           ++    +A +L  DM+S+GI P    YSSLI G C +GR++DA+ L   +  EG +P+  
Sbjct: 643 RNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVV 702

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFN 410
            Y  LI  Y K+ ++++ +++  EM S  + P+                         + 
Sbjct: 703 CYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNK----------------------ITYT 740

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            ++DG  KS  +++A +L  ++   G  P+ VTY V+  G C EG IE+ + +   M ++
Sbjct: 741 VMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQE 800



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 171/360 (47%), Gaps = 39/360 (10%)

Query: 91  NSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILR 150
           N+L+  L         + L +++   G + D ++ N L++  CK   V + F   G +++
Sbjct: 495 NALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVK 554

Query: 151 KVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDG 210
           +   PD  T   LI G+C  GK  EA  L+ +  + D    ++PNV  Y  +IDG CK  
Sbjct: 555 QGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRD----LVPNVYTYGVMIDGYCKAD 610

Query: 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGE 270
            + +   LF ++  + +  ++ VYN+LIR YC         GNT  A +LH++  +    
Sbjct: 611 KIEEGEKLFTELLTQNLELNSVVYNTLIRAYC-------RNGNTVEAFKLHDDMRSKG-- 661

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
                 P   +Y S+I+ +C    ++ AK L  +M+  G++P+VV Y++LI GYC +G++
Sbjct: 662 ----IPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQM 717

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEA 390
           D    +   + S    P+  +Y  +I+ YSK   ++ A  L  EM+  G+ PD       
Sbjct: 718 DKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDT------ 771

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
                             +N L +G CK  ++   +++   + + G   + +TYT ++ G
Sbjct: 772 ----------------VTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDEITYTTLVHG 815



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 115/457 (25%), Positives = 203/457 (44%), Gaps = 75/457 (16%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  P+ V  N L++ +CKM  + DA    G ++ K  +P+ VTL  +I+G C  G+  +A
Sbjct: 346 GFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQA 405

Query: 177 S---------------GLFTKFVAFDCR----------------PNVIPNVICYASIIDG 205
                           G FT  + + C                  N+ PN     +++ G
Sbjct: 406 ECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGG 465

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
           LCK+G  +    L+  +  +G   +    N+LI   C         GN   A+ L ++ +
Sbjct: 466 LCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLC-------KTGNMQEAVRLLKKML 518

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
               E G +   D ++Y ++I+  CK+  V++  +L  +M  +GI PD   Y+ LI G C
Sbjct: 519 ----ERGFVL--DKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMC 572

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-- 383
            +G++D+A  L+   +S   +P+  +Y  +I+ Y K +K+EE   L+ E+++  +  +  
Sbjct: 573 RIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSV 632

Query: 384 -----------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
                      N   +EA +L   + +         ++ L+ G+C   R+  A  L  ++
Sbjct: 633 VYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEM 692

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEK---------AYDLLP---------DMEEKIREC 474
            + G  PNVV YT +I G C  G ++K         +YD+ P         D   K  + 
Sbjct: 693 RKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDM 752

Query: 475 LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHE 511
             A +LLH+M  + + PD +T ++L     K+    E
Sbjct: 753 KTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEE 789



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 116/435 (26%), Positives = 195/435 (44%), Gaps = 52/435 (11%)

Query: 123 VSLNILMNCFC---KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
            ++++L++ +C   + +G  +A      +  K   P V T   L+  L    +  ++  +
Sbjct: 175 AAVDLLIHVYCTQFRNVGFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWV 234

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F        R  V P+V  +++ I+  CK G V     LF DM+  G+ P+   YN+LI 
Sbjct: 235 FETM-----RQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIH 289

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C         GN   A    E+ V      GV  +  +++Y  +IN L K    ++A 
Sbjct: 290 GLC-------KHGNLDEAFRFKEKMVKD----GV--NATLITYSVLINGLMKLEKFNEAN 336

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            +  +   +G  P+ VVY++LIDGYC MG + DA ++   + S+G  P++ + N++I  +
Sbjct: 337 SVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGF 396

Query: 360 SKIEKVEEALSLYGEMISMG--VRPD-----------NSCILEAAELFRTLHNTKFELDL 406
            KI ++E+A  +  EM+S G  + P            NS    A    R +       + 
Sbjct: 397 CKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPND 456

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
            +   LV GLCK  +   A EL+ +L   G   N+VT   +I GLC  G +++A  LL  
Sbjct: 457 GLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKK 516

Query: 467 MEEK------------IRECLK------AIELLHKMAKRYVKPDEITVSILEELLNKDEN 508
           M E+            I  C K        +L  +M K+ ++PD  T ++L   + +   
Sbjct: 517 MLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGK 576

Query: 509 CHECMNLLPSFLSRN 523
             E +NL     SR+
Sbjct: 577 LDEAVNLWNECKSRD 591



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 136/585 (23%), Positives = 220/585 (37%), Gaps = 138/585 (23%)

Query: 66  VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAG-----KKYYVNFICLSERLNTIGLLP 120
           V   +A+  F ++ +    P + +   LL +L       K Y+V F  + +     G+ P
Sbjct: 191 VGFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWV-FETMRQ-----GVSP 244

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           D    +  +N FCK   V DA      + +   SP+VVT   LI GLC  G   EA    
Sbjct: 245 DVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFK 304

Query: 181 TKFVAFDCRPNVI-------------------------------PNVICYASIIDGLCKD 209
            K V       +I                               PN + Y ++IDG CK 
Sbjct: 305 EKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKM 364

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE--LHEEFVNG 267
           G +     +  DM  +GI P++   NS+I+ +C     E A+      LE  L   F   
Sbjct: 365 GNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAE----CILEEMLSRGFSIN 420

Query: 268 NGELGVICH------------------------PDVLSYCSIINSLCKDVLVDKAKELFL 303
            G    I H                        P+     +++  LCK+     A EL+ 
Sbjct: 421 PGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWF 480

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            +  +G   ++V  ++LI G C  G + +A +L   +   G + D  +YNTLI+   K  
Sbjct: 481 RLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEG 540

Query: 364 KVEEALSLYGEMISMGVRPD------------------------NSC------------- 386
           KVEE   L GEM+  G+ PD                        N C             
Sbjct: 541 KVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYG 600

Query: 387 -----------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
                      I E  +LF  L     EL+  V+N L+   C++     A++L   +   
Sbjct: 601 VMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSK 660

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKA 477
           G  P   TY+ +I G+C  G +E A  L+ +M +                  K+ +  K 
Sbjct: 661 GIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKV 720

Query: 478 IELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
           + +L +M+   + P++IT +++ +  +K  +      LL   + +
Sbjct: 721 VNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGK 765


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 112/377 (29%), Positives = 179/377 (47%), Gaps = 45/377 (11%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFS-----PDVVTLGCLIRGLCMQGKFT 174
           PD ++ NIL++   K   V +AF    +I   + +     P+VVT   +I GLC  GK  
Sbjct: 98  PDIITFNILVDALVKSGRVEEAF----QIFESMHTSSQCLPNVVTYTTVINGLCKDGKLD 153

Query: 175 EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVY 234
            A  L        C     PNVI Y+ +++GLCK G  +K   L  +M  RG  PD  +Y
Sbjct: 154 RAIELLDLMNETGC----CPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMY 209

Query: 235 NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294
           N+L+   C +   ++A       LEL +  +         C+P V++Y S++   C+   
Sbjct: 210 NTLLNGLCKSRRLDEA-------LELVQLMIRSG------CYPTVVTYNSLMELFCRSKQ 256

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           VD+A  L   M  RG  PDV+ Y+++I G C   R+DDA+ L   + +  C+PD  +Y+T
Sbjct: 257 VDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYST 316

Query: 355 LINSYSKIEKVEEALSLYG-----EMISMGVRPDNSCIL--------------EAAELFR 395
           +I+   K  +V+    L       EM+     P N+                 +A  L R
Sbjct: 317 IIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLR 376

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            + +++   DL+ F+ ++  LCKS  L +A+++F  +     +PN V Y  +I GL   G
Sbjct: 377 RMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGG 436

Query: 456 GIEKAYDLLPDMEEKIR 472
            ++KA  +   M E  R
Sbjct: 437 EVDKAVRVFELMVESFR 453



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 111/423 (26%), Positives = 184/423 (43%), Gaps = 63/423 (14%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142
           P  F  ++ SL+  L           L + +   G+ P     N ++   CK     DA 
Sbjct: 28  PNEF--TYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDAL 85

Query: 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202
                +     +PD++T   L+  L   G+  EA   F  F +       +PNV+ Y ++
Sbjct: 86  GYFKTVAGTKCTPDIITFNILVDALVKSGRVEEA---FQIFESMHTSSQCLPNVVTYTTV 142

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
           I+GLCKDG +++   L   M   G  P+   Y+ L+   C A       G T     L +
Sbjct: 143 INGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKA-------GRTDKGFTLLQ 195

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
           E      +      PDV+ Y +++N LCK   +D+A EL   M   G  P VV Y+SL++
Sbjct: 196 EMTRRGFQ------PDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLME 249

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
            +C   ++D A +L   +   GC PD  +YNT+I    +  ++++A +L  +M++    P
Sbjct: 250 LFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVP 309

Query: 383 DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW------ELFKKLPRYG 436
                                 D+  ++ ++DGLCK WR+ + W      E+ + + + G
Sbjct: 310 ----------------------DVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTG 347

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITV 496
             PN  TY V+I GLC                 + R+  +A+ LL +M    V PD  + 
Sbjct: 348 CPPNAGTYAVVIEGLC-----------------RARKSQQALALLRRMIDSEVVPDLSSF 390

Query: 497 SIL 499
           S++
Sbjct: 391 SMV 393



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 115/385 (29%), Positives = 178/385 (46%), Gaps = 42/385 (10%)

Query: 75  FNYMIHMQPTPFMPS---FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131
           F  +  M    F P    +N+LL  L   +     + L + +   G  P  V+ N LM  
Sbjct: 191 FTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMEL 250

Query: 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
           FC+   V  AF  +  +  +   PDV+    +I GLC   +  +A  L  + VA  C   
Sbjct: 251 FCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARC--- 307

Query: 192 VIPNVICYASIIDGLCKDGFVN-------KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
            +P+VI Y++IIDGLCKD  V+          +L + MK  G  P+A  Y  +I   C A
Sbjct: 308 -VPDVITYSTIIDGLCKDWRVDADWKLEAACEILEM-MKQTGCPPNAGTYAVVIEGLCRA 365

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                    +  AL L    ++      V+  PD+ S+  +I SLCK   +D A ++F  
Sbjct: 366 R-------KSQQALALLRRMIDSE----VV--PDLSSFSMVIGSLCKSHDLDAAYKIFGM 412

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M  R   P+ V Y++LIDG    G +D A ++F  +  E   P  ++YN++++    + +
Sbjct: 413 MSERECKPNPVAYAALIDGLSKGGEVDKAVRVF-ELMVESFRPGVATYNSVLDGLCGVGR 471

Query: 365 VEEALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFELDLTVFNC 411
           +EEA+ +   MI     PD              SC+ EA ELF+ +    F +++ V+N 
Sbjct: 472 IEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNV 531

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYG 436
           LV+ LCK  RL  A  +  KL   G
Sbjct: 532 LVNELCKKKRLSDAHGVANKLIEAG 556



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/393 (28%), Positives = 175/393 (44%), Gaps = 54/393 (13%)

Query: 160 LGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLF 219
           + C +  L   G+  +A  LF +          +PN   Y S+I GLCK G +++   L 
Sbjct: 1   MNCALNLLVRAGQHGQAVQLFRE-------ERCVPNEFTYGSLIHGLCKAGKLDQAYELL 53

Query: 220 LDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG--NTSAALELHEEFVNGNGELGVI--- 274
            +M+ RGI P   V+N +I+  C A  + DA G   T A  +   + +  N  +  +   
Sbjct: 54  DEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKS 113

Query: 275 ------------------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV 316
                             C P+V++Y ++IN LCKD  +D+A EL   M   G  P+V+ 
Sbjct: 114 GRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVIT 173

Query: 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
           YS L++G C  GR D    L   +   G  PD   YNTL+N   K  +++EAL L   MI
Sbjct: 174 YSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMI 233

Query: 377 SMGVRPDNSCILEAAELF-RTLH-NTKFEL-----------DLTVFNCLVDGLCKSWRLR 423
             G  P         ELF R+   +  F L           D+  +N ++ GLC+  RL 
Sbjct: 234 RSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLD 293

Query: 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHK 483
            A  L K++      P+V+TY+ +I GLC +  ++  + L             A E+L  
Sbjct: 294 DAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEA-----------ACEILEM 342

Query: 484 MAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           M +    P+  T +++ E L +     + + LL
Sbjct: 343 MKQTGCPPNAGTYAVVIEGLCRARKSQQALALL 375



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 112/429 (26%), Positives = 187/429 (43%), Gaps = 40/429 (9%)

Query: 62  KSGEVELNDALCFFNYM-IHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           KSG VE  +A   F  M    Q  P + ++ +++  L         I L + +N  G  P
Sbjct: 112 KSGRVE--EAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCP 169

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           + ++ ++L+   CK       F  L  + R+ F PDV+    L+ GLC   +  EA    
Sbjct: 170 NVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEA---- 225

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            + V    R    P V+ Y S+++  C+   V++   L   M  RG  PD   YN++I  
Sbjct: 226 LELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAG 285

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD---- 296
            C     +DA+        L ++ V         C PDV++Y +II+ LCKD  VD    
Sbjct: 286 LCRDARLDDAQA-------LLKQMVAAR------CVPDVITYSTIIDGLCKDWRVDADWK 332

Query: 297 --KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
              A E+   MK  G  P+   Y+ +I+G C   +   A  L   +     +PD SS++ 
Sbjct: 333 LEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSM 392

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTK 401
           +I S  K   ++ A  ++G M     +P+                + +A  +F  +  + 
Sbjct: 393 VIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVES- 451

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
           F   +  +N ++DGLC   R+  A  + + +      P+  +Y  +I GLC    +E+AY
Sbjct: 452 FRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAY 511

Query: 462 DLLPDMEEK 470
           +L   +E K
Sbjct: 512 ELFQAVEAK 520



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 99/228 (43%), Gaps = 43/228 (18%)

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A +LF + +    +P+   Y SLI G C  G++D A +L   +   G  P  + +N +I
Sbjct: 16  QAVQLFREERC---VPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVI 72

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
               K  +  +AL                        F+T+  TK   D+  FN LVD L
Sbjct: 73  KGLCKAGRFGDALGY----------------------FKTVAGTKCTPDIITFNILVDAL 110

Query: 417 CKSWRLRSAWELFKKLPRYGP-EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL 475
            KS R+  A+++F+ +       PNVVTYT +I GLC +G +++A               
Sbjct: 111 VKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRA--------------- 155

Query: 476 KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
             IELL  M +    P+ IT S+L E L K     +   LL     R 
Sbjct: 156 --IELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRG 201


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 138/527 (26%), Positives = 219/527 (41%), Gaps = 81/527 (15%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           +SG VE  +A  F   M      P   ++ +L+  L   +       L + ++   L P+
Sbjct: 291 RSGAVE--EAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPN 348

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V    L++ F +     +AF  +  ++     P+ +T   L+RGLC  G+   AS L  
Sbjct: 349 VVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLK 408

Query: 182 KFVAFDCRPNVI-------------------------------PNVICYASIIDGLCKDG 210
           + V    RP+ I                               PNV  Y+ +I GLC+ G
Sbjct: 409 QMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSG 468

Query: 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGE 270
              K   L  +M  +G+ P+AFVY  LI  YC        +GN S A E+ ++    N  
Sbjct: 469 EPEKASDLLEEMTTKGLKPNAFVYAPLISGYC-------REGNVSLACEIFDKMTKVN-- 519

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
                 PD+  Y S+I  L K   V+++ + F  M+ RG++P+   YS LI GY   G +
Sbjct: 520 ----VLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDL 575

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN------ 384
           + A +L   +   G  P+   Y  L+ SY K + +E+  S +  M+  GV  DN      
Sbjct: 576 ESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGIL 635

Query: 385 ------SCILEAAELFRTLHNTKFE---LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
                 S  +EAA  FR L   +      D+ V++ L+ GLCK+     A+ +  ++ + 
Sbjct: 636 IHNLSSSGNMEAA--FRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKK 693

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKA------------------YDLLPDMEEKIRECLKA 477
           G +PN+V Y  +I GLC  G I  A                  Y  L D   K+ +   A
Sbjct: 694 GVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNA 753

Query: 478 IELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQ 524
             L ++M    + PD    S+L    +   +  + M L+     R  
Sbjct: 754 FYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGH 800



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/410 (26%), Positives = 185/410 (45%), Gaps = 60/410 (14%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L E + T GL P+      L++ +C+   VS A     ++ +    PD+     LI GL 
Sbjct: 476 LLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLS 535

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
             G+  E+    TK+ A      ++PN   Y+ +I G  K+G +     L   M   G+ 
Sbjct: 536 KVGRVEES----TKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLK 591

Query: 229 PDAFVYNSLI----------------------------RVYCCAVNWEDAKGNTSAALEL 260
           P+  +Y  L+                            R+Y   ++   + GN  AA  +
Sbjct: 592 PNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRV 651

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
               +  NG +     PDV  Y S+I+ LCK    +KA  +  +M  +G+ P++V Y++L
Sbjct: 652 LSG-IEKNGSV-----PDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNAL 705

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           IDG C  G I  AR +F SI ++G +P+  +Y +LI+   K+  +  A  LY EM++ G+
Sbjct: 706 IDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGI 765

Query: 381 RPD------------NSCILEAA-----ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLR 423
            PD            ++  LE A     E+F   H +     ++ FN LVDG CK  +++
Sbjct: 766 TPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHAS-----ISSFNNLVDGFCKRGKMQ 820

Query: 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
              +L   +   G  PN +T   +I GL   G + + + +  ++++K  E
Sbjct: 821 ETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSE 870



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 104/430 (24%), Positives = 183/430 (42%), Gaps = 65/430 (15%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N L+  L             + +   GL+PD  +   L+N  CK    ++A   L  +
Sbjct: 281 TYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEM 340

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
                 P+VV    LI G   +G   EA  +  + VA      V PN I Y +++ GLCK
Sbjct: 341 SCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVA----AGVQPNKITYDNLVRGLCK 396

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
            G +++  +L   M      PD   YN +I  +    + +DA         L  E  N  
Sbjct: 397 MGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDA-------FRLLSEMENAG 449

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL-- 326
                   P+V +Y  +I+ LC+    +KA +L  +M ++G+ P+  VY+ LI GYC   
Sbjct: 450 ------ISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREG 503

Query: 327 ---------------------------------MGRIDDARKLFVSIESEGCIPDTSSYN 353
                                            +GR++++ K F  ++  G +P+  +Y+
Sbjct: 504 NVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYS 563

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE-------------LFRTLHNT 400
            LI+ Y K   +E A  L   M+  G++P++   ++  E              F+++ + 
Sbjct: 564 GLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQ 623

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
              LD  ++  L+  L  S  + +A+ +   + + G  P+V  Y+ +I GLC     EKA
Sbjct: 624 GVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKA 683

Query: 461 YDLLPDMEEK 470
           + +L +M +K
Sbjct: 684 FGILDEMSKK 693



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 111/447 (24%), Positives = 193/447 (43%), Gaps = 36/447 (8%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           KSG V+  DA      M      P +   N+LL  L           + E +   G+ PD
Sbjct: 186 KSGRVQ--DAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPD 243

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             + + L+  +CK+     A   L  +  +    + VT   LI GLC  G   EA G   
Sbjct: 244 VYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKK 303

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
               +     ++P+   Y ++I+GLCK    N+ + L  +M    + P+  VY +LI  +
Sbjct: 304 DMEDY----GLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGF 359

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
                    +GN   A ++ +E V           P+ ++Y +++  LCK   +D+A  L
Sbjct: 360 M-------REGNADEAFKMIKEMVAAG------VQPNKITYDNLVRGLCKMGQMDRASLL 406

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
              M      PD + Y+ +I+G+       DA +L   +E+ G  P+  +Y+ +I+   +
Sbjct: 407 LKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQ 466

Query: 362 IEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTV 408
             + E+A  L  EM + G++P+                +  A E+F  +       DL  
Sbjct: 467 SGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYC 526

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +N L+ GL K  R+  + + F ++   G  PN  TY+ +I G    G +E A  L+  M 
Sbjct: 527 YNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRM- 585

Query: 469 EKIRECLKAIELLH-KMAKRYVKPDEI 494
             +   LK  ++++  + + Y K D+I
Sbjct: 586 --LDTGLKPNDVIYIDLLESYFKSDDI 610



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 164/353 (46%), Gaps = 26/353 (7%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G +PD    + L++  CK      AF  L  + +K   P++V    LI GLC  G  + A
Sbjct: 659 GSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYA 718

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             +F   +A      ++PN + Y S+IDG CK G ++    L+ +M   GI PDAFVY S
Sbjct: 719 RNVFNSILA----KGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVY-S 773

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEE-FVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           ++   C +       G+   A+ L EE F+ G        H  + S+ ++++  CK   +
Sbjct: 774 VLTTGCSSA------GDLEQAMFLIEEMFLRG--------HASISSFNNLVDGFCKRGKM 819

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
            +  +L   +  RG++P+ +   ++I G    G++ +   +FV ++ +        +++L
Sbjct: 820 QETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSL 879

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFE-LDLTVFNCLVD 414
                 I + +  L +  +MI    +  N   L+ A + R +   K   +  + +  +VD
Sbjct: 880 F--MDMINQGKIPLDVVDDMIRDHCKEGN---LDKALMLRDVIVAKSAPMGCSSYLAIVD 934

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            LC+  +L  A  L K++ + G  P+     +++  L   G I++   +L +M
Sbjct: 935 NLCRKGKLSEALNLLKEMDKRGICPSENQCLILLTNLHTSGYIQEHNTVLDNM 987



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 154/379 (40%), Gaps = 78/379 (20%)

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFV-AFDCRPNVIPNVICYAS----------- 201
           +PD      L   LC    F  A+GL  K + A+   P V+ ++    S           
Sbjct: 121 APD--AFAHLAMSLCAGSLFNLANGLLIKMIRAYPSPPVVLASIHRALSDSGHRSPAVLD 178

Query: 202 -IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA-KGNTSAALE 259
            ++D   K G V     + L M+ RG+ P          + CC    +D  + +  A L 
Sbjct: 179 VLVDTYKKSGRVQDAAEVVLMMRDRGMAPS---------IRCCNALLKDLLRADAMALLW 229

Query: 260 LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSS 319
              EF+ G G       PDV +Y ++I + CK    D AK++ ++M+ RG   + V Y+ 
Sbjct: 230 KVREFMVGAG-----ISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNV 284

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK--------------- 364
           LI G C  G +++A      +E  G +PD  +Y  LIN   K  +               
Sbjct: 285 LIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAE 344

Query: 365 --------------------VEEALSLYGEMISMGVRP-----DN--------SCILEAA 391
                                +EA  +  EM++ GV+P     DN          +  A+
Sbjct: 345 LKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRAS 404

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
            L + +       D   +N +++G  +    + A+ L  ++   G  PNV TY++MI GL
Sbjct: 405 LLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGL 464

Query: 452 CIEGGIEKAYDLLPDMEEK 470
           C  G  EKA DLL +M  K
Sbjct: 465 CQSGEPEKASDLLEEMTTK 483



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 113/289 (39%), Gaps = 59/289 (20%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS-----------------S 319
           PD  ++ ++  SLC   L + A  L + M      P VV+ S                  
Sbjct: 122 PDAFAHLAM--SLCAGSLFNLANGLLIKMIRAYPSPPVVLASIHRALSDSGHRSPAVLDV 179

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           L+D Y   GR+ DA ++ + +   G  P     N L+    + + +     +   M+  G
Sbjct: 180 LVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVGAG 239

Query: 380 VRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
           + PD                      +  ++ L++  CK     +A ++  ++   G   
Sbjct: 240 ISPD----------------------VYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGL 277

Query: 440 NVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELL 481
           N VTY V+I GLC  G +E+A+    DME+                  K R   +A  LL
Sbjct: 278 NTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALL 337

Query: 482 HKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
            +M+   +KP+ +  + L +   ++ N  E   ++   ++   + +K+T
Sbjct: 338 DEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKIT 386


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 138/527 (26%), Positives = 219/527 (41%), Gaps = 81/527 (15%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           +SG VE  +A  F   M      P   ++ +L+  L   +       L + ++   L P+
Sbjct: 269 RSGAVE--EAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPN 326

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V    L++ F +     +AF  +  ++     P+ +T   L+RGLC  G+   AS L  
Sbjct: 327 VVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLK 386

Query: 182 KFVAFDCRPNVI-------------------------------PNVICYASIIDGLCKDG 210
           + V    RP+ I                               PNV  Y+ +I GLC+ G
Sbjct: 387 QMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSG 446

Query: 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGE 270
              K   L  +M  +G+ P+AFVY  LI  YC        +GN S A E+ ++    N  
Sbjct: 447 EPEKASDLLEEMTTKGLKPNAFVYAPLISGYC-------REGNVSLACEIFDKMTKVN-- 497

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
                 PD+  Y S+I  L K   V+++ + F  M+ RG++P+   YS LI GY   G +
Sbjct: 498 ----VLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDL 553

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN------ 384
           + A +L   +   G  P+   Y  L+ SY K + +E+  S +  M+  GV  DN      
Sbjct: 554 ESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGIL 613

Query: 385 ------SCILEAAELFRTLHNTKFE---LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
                 S  +EAA  FR L   +      D+ V++ L+ GLCK+     A+ +  ++ + 
Sbjct: 614 IHNLSSSGNMEAA--FRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKK 671

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKA------------------YDLLPDMEEKIRECLKA 477
           G +PN+V Y  +I GLC  G I  A                  Y  L D   K+ +   A
Sbjct: 672 GVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNA 731

Query: 478 IELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQ 524
             L ++M    + PD    S+L    +   +  + M L+     R  
Sbjct: 732 FYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGH 778



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 110/410 (26%), Positives = 185/410 (45%), Gaps = 60/410 (14%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L E + T GL P+      L++ +C+   VS A     ++ +    PD+     LI GL 
Sbjct: 454 LLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLS 513

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
             G+  E+    TK+ A      ++PN   Y+ +I G  K+G +     L   M   G+ 
Sbjct: 514 KVGRVEES----TKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLK 569

Query: 229 PDAFVYNSLI----------------------------RVYCCAVNWEDAKGNTSAALEL 260
           P+  +Y  L+                            R+Y   ++   + GN  AA  +
Sbjct: 570 PNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRV 629

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
               +  NG +     PDV  Y S+I+ LCK    +KA  +  +M  +G+ P++V Y++L
Sbjct: 630 LSG-IEKNGSV-----PDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNAL 683

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           IDG C  G I  AR +F SI ++G +P+  +Y +LI+   K+  +  A  LY EM++ G+
Sbjct: 684 IDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGI 743

Query: 381 RPD------------NSCILEAA-----ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLR 423
            PD            ++  LE A     E+F   H +     ++ FN LVDG CK  +++
Sbjct: 744 TPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHAS-----ISSFNNLVDGFCKRGKMQ 798

Query: 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
              +L   +   G  PN +T   +I GL   G + + + +  ++++K  E
Sbjct: 799 ETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSE 848



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 114/484 (23%), Positives = 203/484 (41%), Gaps = 77/484 (15%)

Query: 35  EPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLL 94
           E S+      S +E   K+ ++  + +K   VE+ +  C  N +          ++N L+
Sbjct: 217 EGSAARGRHGSALEAYCKVREF--DTAKKVLVEMRERGCGLNTV----------TYNVLI 264

Query: 95  GALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFS 154
             L             + +   GL+PD  +   L+N  CK    ++A   L  +      
Sbjct: 265 AGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELK 324

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
           P+VV    LI G   +G   EA  +  + VA      V PN I Y +++ GLCK G +++
Sbjct: 325 PNVVVYANLIDGFMREGNADEAFKMIKEMVA----AGVQPNKITYDNLVRGLCKMGQMDR 380

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
             +L   M      PD   YN +I  +    + +DA         L  E  N        
Sbjct: 381 ASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDA-------FRLLSEMENAG------ 427

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL-------- 326
             P+V +Y  +I+ LC+    +KA +L  +M ++G+ P+  VY+ LI GYC         
Sbjct: 428 ISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLAC 487

Query: 327 ---------------------------MGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
                                      +GR++++ K F  ++  G +P+  +Y+ LI+ Y
Sbjct: 488 EIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGY 547

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAE-------------LFRTLHNTKFELDL 406
            K   +E A  L   M+  G++P++   ++  E              F+++ +    LD 
Sbjct: 548 LKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDN 607

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
            ++  L+  L  S  + +A+ +   + + G  P+V  Y+ +I GLC     EKA+ +L +
Sbjct: 608 RIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDE 667

Query: 467 MEEK 470
           M +K
Sbjct: 668 MSKK 671



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 154/330 (46%), Gaps = 27/330 (8%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G +PD    + L++  CK      AF  L  + +K   P++V    LI GLC  G  + A
Sbjct: 637 GSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYA 696

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             +F   +A      ++PN + Y S+IDG CK G ++    L+ +M   GI PDAFVY S
Sbjct: 697 RNVFNSILA----KGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVY-S 751

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEE-FVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           ++   C +       G+   A+ L EE F+ G        H  + S+ ++++  CK   +
Sbjct: 752 VLTTGCSSA------GDLEQAMFLIEEMFLRG--------HASISSFNNLVDGFCKRGKM 797

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
            +  +L   +  RG++P+ +   ++I G    G++ +   +FV ++ +        +++L
Sbjct: 798 QETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSL 857

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFE-LDLTVFNCLVD 414
                 I + +  L +  +MI    +  N   L+ A + R +   K   +  + +  +VD
Sbjct: 858 F--MDMINQGKIPLDVVDDMIRDHCKEGN---LDKALMLRDVIVAKSAPMGCSSYLAIVD 912

Query: 415 GLCKSWRLRSAWELFKKLPRYGP-EPNVVT 443
            LC+  +L  A  L K++ + G  +P +V 
Sbjct: 913 NLCRKGKLSEALNLLKEMDKRGNLQPTLVA 942



 Score = 46.6 bits (109), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 17/127 (13%)

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
           L+   +N L+ GLC+S  +  A+   K +  YG  P+  TY  +I GLC           
Sbjct: 255 LNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLC----------- 303

Query: 464 LPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
                 K R   +A  LL +M+   +KP+ +  + L +   ++ N  E   ++   ++  
Sbjct: 304 ------KSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAG 357

Query: 524 QEESKLT 530
            + +K+T
Sbjct: 358 VQPNKIT 364


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 119/463 (25%), Positives = 207/463 (44%), Gaps = 72/463 (15%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           +K+G+  LNDA   F  ++H   TP   ++ SL+  L     + +   L   +N  G  P
Sbjct: 334 AKAGK--LNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPP 391

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
             V+ N++++  CK   + +A   + +++     PDVVT   ++ GLC   +  EA  LF
Sbjct: 392 SPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLF 451

Query: 181 TKFVAFDCRPNV----------------------------------------IPNVICYA 200
            +     C PN                                         +P+V+ Y+
Sbjct: 452 NEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYS 511

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL 260
           ++I GLC    V+  R L  DM  R   P     N+LI   C A       G    A E+
Sbjct: 512 TLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKA-------GRIKEAREV 564

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
            +  V+ +G+      PDV++Y ++++  C+    ++A+EL  DM +RG+ P+VV Y++L
Sbjct: 565 LDAMVS-SGQ-----SPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTAL 618

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           + G C   R+ +A  +F  ++S GC P+  +Y  LI  +    +V+  L L+GEM+  G+
Sbjct: 619 VSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGI 678

Query: 381 RPDNSCILE-AAELFRTLHNTKFELDL---------------TVFNCLVDGLCKSWRLRS 424
            PD+      AAEL ++  + +  L++                V+   VDGL ++ ++  
Sbjct: 679 SPDHVVYGTLAAELCKSGRSAR-ALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEM 737

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           A    + + R G  P       ++ GLC  G   +A  +L ++
Sbjct: 738 ALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEI 780



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 122/413 (29%), Positives = 190/413 (46%), Gaps = 45/413 (10%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P  V+LN+L+  FC    V  A   L  +  +  +PD V+   ++ GLC  G+  EA  L
Sbjct: 210 PCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEAVRL 269

Query: 180 F--TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
           F   +  +     +  P++  Y  +I GLC++  +++   +F  M  R + PD++ Y  L
Sbjct: 270 FGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGIL 329

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           I     A    DA+        L ++ ++     GV   P  ++Y S+I+ LC     D 
Sbjct: 330 IDGLAKAGKLNDAR-------NLFQKLLHS----GVT--PSTVAYTSLIHGLCMANSFDD 376

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A+ELF DM  RG  P  V Y+ +ID  C  G +++A  L   +  +G +PD  +YNT+++
Sbjct: 377 ARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMD 436

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
              K  +VEEAL L+ EM  +G  P+           R  HNT   L L      +D  C
Sbjct: 437 GLCKSSRVEEALLLFNEMERLGCTPN-----------RRSHNTII-LGLCQ-QSKIDQAC 483

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKA 477
           +  +L  A+ L K++   G  P+VVTY+ +I GLC    ++ A  LL D           
Sbjct: 484 QRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLED----------- 532

Query: 478 IELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
                 M KR  KP  +T + L   L K     E   +L + +S  Q    +T
Sbjct: 533 ------MVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVT 579



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 161/374 (43%), Gaps = 68/374 (18%)

Query: 189 RPNVIPNVICYASIIDGLCKDGFV-NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           +  + P  + + S+I G C  G     V++  L  +    YPD  VYN LI       + 
Sbjct: 3   QQGIFPAPLLFTSVIQGWCNVGRTFEAVKIFSLMEECHSPYPD--VYNVLI-------DS 53

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
              +  T A  ++ +  V+        C PD  ++ +I+  LCK   +D+A+ +  +M+S
Sbjct: 54  LSKRQETEAVKKMVQVMVDRG------CFPDSFTFTTILCGLCKAGKMDEAELVMDEMRS 107

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           R I P     S L    CL G ++ A +L   +     + ++S+YN ++ +  K  +V++
Sbjct: 108 RMIPPYFATSSFLAHELCLRGSMERAFQLLEIMP----VANSSAYNIVVVALCKAARVDD 163

Query: 368 ALSLYGEM--------------ISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLV 413
           AL L   M              + +G+  D+  I EA +++R     + E  L   N L+
Sbjct: 164 ALELARTMSEKRIPLAAGSLDSVLVGLM-DSGRIDEALQVYR---ENRREPCLVTLNVLL 219

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME----- 468
           +G C   ++  A EL + +P     P+ V+Y  ++ GLC  G +E+A  L  D E     
Sbjct: 220 EGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEAVRLFGDRELPSSS 279

Query: 469 ----------------------EKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
                                 ++I E   A+++  KM +R V PD  +  IL + L K 
Sbjct: 280 SSSSSPPSLRGYNIVILGLCQNDRIDE---AVQMFEKMNERNVSPDSWSYGILIDGLAKA 336

Query: 507 ENCHECMNLLPSFL 520
              ++  NL    L
Sbjct: 337 GKLNDARNLFQKLL 350



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 23/163 (14%)

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M  +GI P  ++++S+I G+C +GR  +A K+F S+  E   P    YN LI+S SK ++
Sbjct: 1   MFQQGIFPAPLLFTSVIQGWCNVGRTFEAVKIF-SLMEECHSPYPDVYNVLIDSLSKRQE 59

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
            E    +   M+  G  PD+                        F  ++ GLCK+ ++  
Sbjct: 60  TEAVKKMVQVMVDRGCFPDS----------------------FTFTTILCGLCKAGKMDE 97

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           A  +  ++      P   T + +   LC+ G +E+A+ LL  M
Sbjct: 98  AELVMDEMRSRMIPPYFATSSFLAHELCLRGSMERAFQLLEIM 140


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 110/435 (25%), Positives = 195/435 (44%), Gaps = 57/435 (13%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + S+N+++   +      +   + +R+ + G  PD V+ NI++   C    +  AF  
Sbjct: 129 PDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEV 188

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           +  +L+    P V+T   LI    ++G+  EA  LF + V+   RP++      Y +II 
Sbjct: 189 MDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLY----TYNAIIR 244

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           G+CK+G  ++       +  RG  PD   YN L+R +     WED +        L ++ 
Sbjct: 245 GICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGE-------RLMKDM 297

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           V         C P+V+++  +I+S C++  V +A  +   MK +G+ PD   Y  LI  +
Sbjct: 298 VLSG------CEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAF 351

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           C  GR+D A +    + S+GC+PD  +YNT++ +  K    + AL ++ ++  +G  P  
Sbjct: 352 CKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPP-- 409

Query: 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
                                +  +N +   L        A E+  ++ R G +P+ +TY
Sbjct: 410 --------------------TVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITY 449

Query: 445 TVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAK 486
             +I  LC +G +++A  LL DME                   K     + IELL  M +
Sbjct: 450 NSLISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVE 509

Query: 487 RYVKPDEITVSILEE 501
           +   P+E +  +L E
Sbjct: 510 KGCLPNETSYVLLIE 524



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 106/420 (25%), Positives = 182/420 (43%), Gaps = 49/420 (11%)

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N  C+    +++   L  ++ K F PDVV    LI+G        +A  +      + 
Sbjct: 68  LLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG 127

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
                 P+V  Y ++I G  K   ++    +F  M+ RG  PD   YN +I   C     
Sbjct: 128 -----DPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLC----- 177

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
             ++G    A E+ +E +         C P V++Y  +I +   +  +++A ELF ++ S
Sbjct: 178 --SRGKLELAFEVMDELLKDG------CKPSVITYTILIEATILEGRINEALELFDELVS 229

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           RG+ PD+  Y+++I G C  G  D A      + + GC PD  SYN L+ S+    + E+
Sbjct: 230 RGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWED 289

Query: 368 ALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
              L  +M+  G  P+                + EA  +   +       D   ++ L+ 
Sbjct: 290 GERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLIS 349

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE----- 469
             CK  RL  A E  +K+   G  P++V Y  ++  LC  G  + A D+   ++E     
Sbjct: 350 AFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPP 409

Query: 470 ----------KIREC---LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                      +  C   +KA+E++ +M ++ + PDEIT + L   L +D    E + LL
Sbjct: 410 TVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLL 469



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 148/311 (47%), Gaps = 19/311 (6%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           AL F  ++      P + S+N LL +   K  + +   L + +   G  P+ V+ +IL++
Sbjct: 255 ALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILIS 314

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
            FC+   V +A   L  +  K  +PD  +   LI   C +G+   A     K V+  C  
Sbjct: 315 SFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGC-- 372

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR-VYCCAVNWED 249
             +P+++ Y +I+  LCK G  +    +F  +   G  P    YN++   ++ C      
Sbjct: 373 --LPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSC------ 424

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
             GN   ALE+  E +           PD ++Y S+I+ LC+D LVD+A  L +DM++  
Sbjct: 425 --GNKIKALEMISEMIRKG------IDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATR 476

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
             P V+ ++ ++ G C   R+ +  +L +++  +GC+P+ +SY  LI   +      EA+
Sbjct: 477 FQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETSYVLLIEGIAYAGWRAEAM 536

Query: 370 SLYGEMISMGV 380
            L   +  +GV
Sbjct: 537 ELANSLYRLGV 547


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 112/377 (29%), Positives = 179/377 (47%), Gaps = 45/377 (11%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFS-----PDVVTLGCLIRGLCMQGKFT 174
           PD ++ NIL++   K   V +AF    +I   + +     P+VVT   +I GLC  GK  
Sbjct: 98  PDIITFNILVDALVKSGRVEEAF----QIFESMHTSSQCLPNVVTYTTVINGLCKDGKLD 153

Query: 175 EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVY 234
            A  L        C     PNVI Y+ +++GLCK G  +K   L  +M  RG  PD  +Y
Sbjct: 154 RAIELLDLMNETGC----CPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMY 209

Query: 235 NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294
           N+L+   C +   ++A       LEL +  +         C+P V++Y S++   C+   
Sbjct: 210 NTLLNGLCKSRRLDEA-------LELVQLMIRSG------CYPTVVTYNSLMELFCRSKQ 256

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           VD+A  L   M  RG  PDV+ Y+++I G C   R+DDA+ L   + +  C+PD  +Y+T
Sbjct: 257 VDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYST 316

Query: 355 LINSYSKIEKVEEALSLYG-----EMISMGVRPDNSCIL--------------EAAELFR 395
           +I+   K  +V+    L       EM+     P N+                 +A  L R
Sbjct: 317 IIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLR 376

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            + +++   DL+ F+ ++  LCKS  L +A+++F  +     +PN V Y  +I GL   G
Sbjct: 377 RMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGG 436

Query: 456 GIEKAYDLLPDMEEKIR 472
            ++KA  +   M E  R
Sbjct: 437 EVDKAVRVFELMVESFR 453



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 111/423 (26%), Positives = 184/423 (43%), Gaps = 63/423 (14%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142
           P  F  ++ SL+  L           L + +   G+ P     N ++   CK     DA 
Sbjct: 28  PNEF--TYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDAL 85

Query: 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202
                +     +PD++T   L+  L   G+  EA   F  F +       +PNV+ Y ++
Sbjct: 86  GYFKTVAGTKCTPDIITFNILVDALVKSGRVEEA---FQIFESMHTSSQCLPNVVTYTTV 142

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
           I+GLCKDG +++   L   M   G  P+   Y+ L+   C A       G T     L +
Sbjct: 143 INGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKA-------GRTDKGFTLLQ 195

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
           E      +      PDV+ Y +++N LCK   +D+A EL   M   G  P VV Y+SL++
Sbjct: 196 EMTRRGFQ------PDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLME 249

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
            +C   ++D A +L   +   GC PD  +YNT+I    +  ++++A +L  +M++    P
Sbjct: 250 LFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVP 309

Query: 383 DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW------ELFKKLPRYG 436
                                 D+  ++ ++DGLCK WR+ + W      E+ + + + G
Sbjct: 310 ----------------------DVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTG 347

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITV 496
             PN  TY V+I GLC                 + R+  +A+ LL +M    V PD  + 
Sbjct: 348 CPPNAGTYAVVIEGLC-----------------RARKSQQALALLRRMIDSEVVPDLSSF 390

Query: 497 SIL 499
           S++
Sbjct: 391 SMV 393



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 115/385 (29%), Positives = 178/385 (46%), Gaps = 42/385 (10%)

Query: 75  FNYMIHMQPTPFMPS---FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131
           F  +  M    F P    +N+LL  L   +     + L + +   G  P  V+ N LM  
Sbjct: 191 FTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMEL 250

Query: 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
           FC+   V  AF  +  +  +   PDV+    +I GLC   +  +A  L  + VA  C   
Sbjct: 251 FCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARC--- 307

Query: 192 VIPNVICYASIIDGLCKDGFVN-------KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
            +P+VI Y++IIDGLCKD  V+          +L + MK  G  P+A  Y  +I   C A
Sbjct: 308 -VPDVITYSTIIDGLCKDWRVDADWKLEAACEILEM-MKQTGCPPNAGTYAVVIEGLCRA 365

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                    +  AL L    ++      V+  PD+ S+  +I SLCK   +D A ++F  
Sbjct: 366 R-------KSQQALALLRRMIDSE----VV--PDLSSFSMVIGSLCKSHDLDAAYKIFGM 412

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M  R   P+ V Y++LIDG    G +D A ++F  +  E   P  ++YN++++    + +
Sbjct: 413 MSERECKPNPVAYAALIDGLSKGGEVDKAVRVF-ELMVESFRPGVATYNSVLDGLCGVGR 471

Query: 365 VEEALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFELDLTVFNC 411
           +EEA+ +   MI     PD              SC+ EA ELF+ +    F +++ V+N 
Sbjct: 472 IEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNV 531

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYG 436
           LV+ LCK  RL  A  +  KL   G
Sbjct: 532 LVNELCKKKRLSDAHGVANKLIEAG 556



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 113/393 (28%), Positives = 175/393 (44%), Gaps = 54/393 (13%)

Query: 160 LGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLF 219
           + C +  L   G+  +A  LF +          +PN   Y S+I GLCK G +++   L 
Sbjct: 1   MNCALNLLVRAGQHGQAVQLFRE-------ERCVPNEFTYGSLIHGLCKAGKLDQAYELL 53

Query: 220 LDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG--NTSAALELHEEFVNGNGELGVI--- 274
            +M+ RGI P   V+N +IR  C A  + DA G   T A  +   + +  N  +  +   
Sbjct: 54  DEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKS 113

Query: 275 ------------------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV 316
                             C P+V++Y ++IN LCKD  +D+A EL   M   G  P+V+ 
Sbjct: 114 GRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVIT 173

Query: 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
           YS L++G C  GR D    L   +   G  PD   YNTL+N   K  +++EAL L   MI
Sbjct: 174 YSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMI 233

Query: 377 SMGVRPDNSCILEAAELF-RTLH-NTKFEL-----------DLTVFNCLVDGLCKSWRLR 423
             G  P         ELF R+   +  F L           D+  +N ++ GLC+  RL 
Sbjct: 234 RSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLD 293

Query: 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHK 483
            A  L K++      P+V+TY+ +I GLC +  ++  + L             A E+L  
Sbjct: 294 DAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEA-----------ACEILEM 342

Query: 484 MAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           M +    P+  T +++ E L +     + + LL
Sbjct: 343 MKQTGCPPNAGTYAVVIEGLCRARKSQQALALL 375



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 112/429 (26%), Positives = 187/429 (43%), Gaps = 40/429 (9%)

Query: 62  KSGEVELNDALCFFNYM-IHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           KSG VE  +A   F  M    Q  P + ++ +++  L         I L + +N  G  P
Sbjct: 112 KSGRVE--EAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCP 169

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           + ++ ++L+   CK       F  L  + R+ F PDV+    L+ GLC   +  EA    
Sbjct: 170 NVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEA---- 225

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            + V    R    P V+ Y S+++  C+   V++   L   M  RG  PD   YN++I  
Sbjct: 226 LELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAG 285

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD---- 296
            C     +DA+        L ++ V         C PDV++Y +II+ LCKD  VD    
Sbjct: 286 LCRDARLDDAQA-------LLKQMVAAR------CVPDVITYSTIIDGLCKDWRVDADWK 332

Query: 297 --KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
              A E+   MK  G  P+   Y+ +I+G C   +   A  L   +     +PD SS++ 
Sbjct: 333 LEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSM 392

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTK 401
           +I S  K   ++ A  ++G M     +P+                + +A  +F  +  + 
Sbjct: 393 VIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVES- 451

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
           F   +  +N ++DGLC   R+  A  + + +      P+  +Y  +I GLC    +E+AY
Sbjct: 452 FRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAY 511

Query: 462 DLLPDMEEK 470
           +L   +E K
Sbjct: 512 ELFQAVEAK 520



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 99/228 (43%), Gaps = 43/228 (18%)

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A +LF + +    +P+   Y SLI G C  G++D A +L   +   G  P  + +N +I
Sbjct: 16  QAVQLFREERC---VPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVI 72

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
               K  +  +AL                        F+T+  TK   D+  FN LVD L
Sbjct: 73  RGLCKAGRFGDALGY----------------------FKTVAGTKCTPDIITFNILVDAL 110

Query: 417 CKSWRLRSAWELFKKLPRYGP-EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL 475
            KS R+  A+++F+ +       PNVVTYT +I GLC +G +++A               
Sbjct: 111 VKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRA--------------- 155

Query: 476 KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
             IELL  M +    P+ IT S+L E L K     +   LL     R 
Sbjct: 156 --IELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRG 201


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/423 (25%), Positives = 190/423 (44%), Gaps = 48/423 (11%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           +AL  +  M+     P + ++++L+ AL  K+     + L + +  +GL P+  +  I +
Sbjct: 210 EALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICI 269

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
               +   + +A+    R+  +   PD+VT   LI  LC  G+   A  LF K  A   +
Sbjct: 270 RVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHK 329

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
               P+ + Y +++D     G ++  +  +  M+  G  PD   +  L+ V C A ++++
Sbjct: 330 ----PDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDE 385

Query: 250 A--------KGNTSAALELHEEFVNGNGELGVI--------------CHPDVLSYCSIIN 287
           A        K      L  +   + G    G I                P   +Y   I+
Sbjct: 386 AFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFID 445

Query: 288 SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
              K     KA E F  MK++GI+P++V  ++ +     MGR+ +A+ +F  +   G  P
Sbjct: 446 YFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAP 505

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLT 407
           D+ +YN ++  YSK+ +V+EA++L  EMI  G  P                      D+ 
Sbjct: 506 DSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEP----------------------DVI 543

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           V N L+D L K+ R+  AW++F ++      P VVTY  ++ GL  EG ++KA +L   M
Sbjct: 544 VVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESM 603

Query: 468 EEK 470
            EK
Sbjct: 604 IEK 606



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 156/319 (48%), Gaps = 29/319 (9%)

Query: 163  LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
            L+R LC   +   A  +F KF     +  + P +  Y  +I  L +  +  K   LF DM
Sbjct: 758  LVRVLCKHKRELYAYQIFDKFTK---KLGISPTLASYNCLIGELLEVHYTEKAWDLFKDM 814

Query: 223  KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
            K  G  PDAF +N L+ V+          G  +   EL++E ++        C PD ++Y
Sbjct: 815  KNVGCAPDAFTFNMLLAVH-------GKSGKITELFELYKEMISRR------CKPDAITY 861

Query: 283  CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
              +I+SL K   +DKA + F D+ S    P    Y  LIDG   +GR+++A +LF  +  
Sbjct: 862  NIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSD 921

Query: 343  EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--NSCIL-----------E 389
             GC P+ + +N LIN Y KI   E A  L+  M++ G+RPD  +  IL           E
Sbjct: 922  YGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDE 981

Query: 390  AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
            A   F  L +T  + D   +N +++GL KS R+  A  L+ ++   G  P++ TY  ++ 
Sbjct: 982  ALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLML 1041

Query: 450  GLCIEGGIEKAYDLLPDME 468
             L + G +E+A  +  +++
Sbjct: 1042 NLGLAGMVEQAKRMYEELQ 1060



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 160/362 (44%), Gaps = 39/362 (10%)

Query: 84   TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
            +P + S+N L+G L    Y      L + +  +G  PD  + N+L+    K   +++ F 
Sbjct: 785  SPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFE 844

Query: 144  ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
                ++ +   PD +T   +I  L       +A   F   V+ D RP   P    Y  +I
Sbjct: 845  LYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPT--PRT--YGPLI 900

Query: 204  DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
            DGL K G + +   LF +M   G  P+  ++N LI  Y          G+T  A +L + 
Sbjct: 901  DGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGY-------GKIGDTETACQLFKR 953

Query: 264  FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
             VN          PD+ SY  +++ LC    VD+A   F ++KS G+ PD + Y+ +I+G
Sbjct: 954  MVNEG------IRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIING 1007

Query: 324  YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
                 R+++A  L+  + + G +PD  +YN+L+ +      VE+A  +Y E+   G+ P 
Sbjct: 1008 LGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEP- 1066

Query: 384  NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                                 D+  +N L+ G   S     A+ ++K +   G  PN+ T
Sbjct: 1067 ---------------------DVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGT 1105

Query: 444  YT 445
            Y 
Sbjct: 1106 YA 1107



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 171/387 (44%), Gaps = 67/387 (17%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G +PD V+  IL++  CK     +AF     + ++   P++ T   LI GL   G+  +A
Sbjct: 362 GYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDA 421

Query: 177 SGLFTKFVAFDCRPN-------------------------------VIPNVICYASIIDG 205
             L     +   +P                                ++PN++   + +  
Sbjct: 422 LKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYS 481

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
           L + G + + + +F  ++  G+ PD+  YN +++ Y          G    A+ L  E +
Sbjct: 482 LAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKV-------GQVDEAVNLLSEMI 534

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
             NG     C PDV+   S+I+SL K   VD+A ++F  MK   + P VV Y++L+ G  
Sbjct: 535 R-NG-----CEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLG 588

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
             GR+  A +LF S+  + C P+T S+NTL++ + K ++VE AL ++ +M  M  +P   
Sbjct: 589 KEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKP--- 645

Query: 386 CILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
                              D+  +N ++ GL K  ++  A+  F +L +    P+ VT  
Sbjct: 646 -------------------DVLTYNTVIYGLIKENKVNHAFWFFHQLKK-SMHPDHVTIC 685

Query: 446 VMICGLCIEGGIEKAYDLLPDMEEKIR 472
            ++ GL   G I  A  +  D   ++R
Sbjct: 686 TLLPGLVKCGQIGDAISIARDFMYQVR 712



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 96/411 (23%), Positives = 179/411 (43%), Gaps = 48/411 (11%)

Query: 137 GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNV 196
           G+      L ++ +  F  +  +   LI  L   G   EA  ++ + V+      + P++
Sbjct: 172 GLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVS----EGLKPSL 227

Query: 197 ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSA 256
             Y++++  L K      V VL  +M+  G+ P+ + +   IRV           G    
Sbjct: 228 KTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVL----------GRAGK 277

Query: 257 ALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV 316
             E +E F   + E    C PD+++Y  +I++LC    ++ AKELF+ MK+ G  PD V+
Sbjct: 278 IDEAYEIFRRMDDE---GCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVI 334

Query: 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
           Y +L+D +   G +D  ++ +  +E++G +PD  ++  L++   K    +EA + +  M 
Sbjct: 335 YITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMR 394

Query: 377 SMGVRPD----NSCIL---------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLR 423
             G+ P+    N+ I          +A +L  T+ +   +     +N  +D   KS    
Sbjct: 395 KQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETG 454

Query: 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA------------------YDLLP 465
            A E F+K+   G  PN+V     +  L   G + +A                  Y+++ 
Sbjct: 455 KAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMM 514

Query: 466 DMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
               K+ +  +A+ LL +M +   +PD I V+ L + L K     E   + 
Sbjct: 515 KCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMF 565



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 134/319 (42%), Gaps = 44/319 (13%)

Query: 71   ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
            A   F  M ++   P   +FN LL              L + + +    PD ++ NI+++
Sbjct: 807  AWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVIS 866

Query: 131  CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
               K   +  A      ++   F P   T G LI GL   G+  EA  LF +   + C+P
Sbjct: 867  SLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKP 926

Query: 191  N-------------------------------VIPNVICYASIIDGLCKDGFVNKVRVLF 219
            N                               + P++  Y  ++D LC  G V++    F
Sbjct: 927  NCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYF 986

Query: 220  LDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDV 279
             ++K  G+ PD   YN +I       N          AL L+ E  N     G++  PD+
Sbjct: 987  NELKSTGLDPDFIAYNRII-------NGLGKSQRMEEALALYNEMRNR----GIV--PDL 1033

Query: 280  LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
             +Y S++ +L    +V++AK ++ +++  G+ PDV  Y++LI GY L    + A  ++ +
Sbjct: 1034 YTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKN 1093

Query: 340  IESEGCIPDTSSYNTLINS 358
            +  +GC P+  +Y  L N 
Sbjct: 1094 MMVDGCNPNIGTYAQLPNQ 1112



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 105/249 (42%), Gaps = 31/249 (12%)

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           V+    +F  M+ + I  D+  Y ++     + G +     +   +   G + +  SYN 
Sbjct: 138 VEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNG 197

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPD---NSCILEAAE----------LFRTLHNTK 401
           LI+   +     EAL +Y  M+S G++P     S ++ A            L + + +  
Sbjct: 198 LIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLG 257

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
              ++  F   +  L ++ ++  A+E+F+++   G  P++VTYTV+I  LC  G +E A 
Sbjct: 258 LRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAK 317

Query: 462 DLLPDMEEKIRECLKAI------------------ELLHKMAKRYVKPDEITVSILEELL 503
           +L   M+    +  + I                  E   +M      PD +T +IL ++L
Sbjct: 318 ELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVL 377

Query: 504 NKDENCHEC 512
            K  +  E 
Sbjct: 378 CKARDFDEA 386


>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
 gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
          Length = 577

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 117/437 (26%), Positives = 202/437 (46%), Gaps = 61/437 (13%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFS-----PDVVTLGCLIRGLCMQGKFT 174
           P+ ++ N ++N  CK   + +       + ++  +     PDV++   +I  LC   +  
Sbjct: 66  PNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVD 125

Query: 175 EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVY 234
           +A   F +  A  C PNV+     Y+S+IDGLCK   V++   L + +KG  + P A  Y
Sbjct: 126 KAYEYFKRMRAVGCAPNVVT----YSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYY 181

Query: 235 NSLIRVYCCAVNWEDAKGNTSAALEL--------------------HEEFVNGNGE---- 270
           N++       VN    +G  S  LEL                    H  + N   E    
Sbjct: 182 NAV-------VNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQ 234

Query: 271 -----LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
                L     P+V++Y   ++ LCK   VD+A  + L+M    + PDV+ YSS+IDG+C
Sbjct: 235 FFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFC 294

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP--- 382
             GR+D A  +F  +    CIP   ++ TL++ +S+ +K  EA  ++ +M++ G  P   
Sbjct: 295 KAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQ 354

Query: 383 ------DNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
                 D  C    +  A E++  +   K + D   +  L+  LC++ R+  A E    +
Sbjct: 355 TYNVLMDCVCGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVM 414

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE--KIRECLKAIELLHKMAKRYVK 490
                 PN      ++  LC +G +++A  +L ++ E  K  E  +A+E++ +M  + V+
Sbjct: 415 EADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEICKAGEPDEAVEVIEQMVLKGVR 474

Query: 491 PDEIT-VSILEELLNKD 506
           PDE T V++L  L   D
Sbjct: 475 PDEATYVAVLRSLCGLD 491



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/289 (31%), Positives = 154/289 (53%), Gaps = 32/289 (11%)

Query: 199 YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL 258
           Y ++I+G CK G V++   L  +MK RG+  D  ++++LI+  C        KG    AL
Sbjct: 2   YTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLC-------RKGRIDEAL 54

Query: 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR-----GIIPD 313
           E  +        +G  C P+V++Y +++N LCK   +D+  ELF DM+ R     G  PD
Sbjct: 55  EQFK-------SMGEECSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPD 107

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           V+ YS++ID  C   R+D A + F  + + GC P+  +Y++LI+   K+++V+EA SL  
Sbjct: 108 VISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLM 167

Query: 374 EMISMGVRPD----NSCI---------LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           ++    + P     N+ +          E  EL   +    F +++  FN ++  L K+ 
Sbjct: 168 QLKGEDMVPRAMYYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKND 227

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
               A + F++L + G +PNVVTY V + GLC  G +++AY +L +M E
Sbjct: 228 EQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVE 276



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 120/462 (25%), Positives = 192/462 (41%), Gaps = 114/462 (24%)

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++N FCK   V  AF  L  +  +    DV+    LI+GLC +G+  EA   F K +  +
Sbjct: 5   VINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQF-KSMGEE 63

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C PNVI     Y ++++GLCK   +++   LF DM+ R                     +
Sbjct: 64  CSPNVIT----YNTVVNGLCKANRIDEGLELFDDMEKR---------------------Y 98

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           E + G                      C PDV+SY ++I++LCK   VDKA E F  M++
Sbjct: 99  EASHG----------------------CEPDVISYSTVIDALCKAQRVDKAYEYFKRMRA 136

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            G  P+VV YSSLIDG C + R+D+A  L + ++ E  +P    YN ++N + +  K  E
Sbjct: 137 VGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAVVNGFKRQGKPSE 196

Query: 368 ALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
            L L   M   G   +             N    +A + F  L  +  + ++  +N  V 
Sbjct: 197 CLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVH 256

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM------- 467
           GLCK+ ++  A+ +  ++      P+V+TY+ +I G C  G ++KA D+   M       
Sbjct: 257 GLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIP 316

Query: 468 --------------EEKIRECLK--------------------------------AIELL 481
                          +K RE  +                                A+E+ 
Sbjct: 317 HPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIY 376

Query: 482 HKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
           HKM ++  +PD  T + L + L +     E    L    + N
Sbjct: 377 HKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADN 418



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 157/353 (44%), Gaps = 24/353 (6%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G   + +  N +++   K      A     R+L+    P+VVT    + GLC  GK  EA
Sbjct: 208 GFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEA 267

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             +  + V       V P+VI Y+SIIDG CK G ++K   +F  M      P    + +
Sbjct: 268 YRILLEMV----ESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMT 323

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           L+  +            +  A  +HE+ VN     G I  P + +Y  +++ +C    V+
Sbjct: 324 LLHGF-------SEHKKSREAFRVHEDMVNA----GFI--PGLQTYNVLMDCVCGADSVE 370

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A E++  MK +   PD   Y+ LI   C   R+D+A++    +E++  +P+ +  + L+
Sbjct: 371 SALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALV 430

Query: 357 NSYSKIEKVEEALSLYGEMISM--GVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
               K  +V+EA S+   ++ +     PD     EA E+   +       D   +  ++ 
Sbjct: 431 EVLCKQGEVDEACSVLDNVVEICKAGEPD-----EAVEVIEQMVLKGVRPDEATYVAVLR 485

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            LC   R+ SA   F+K+   G  P +VTYT++I   C     + A+ +   M
Sbjct: 486 SLCGLDRVDSAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADDAFRIFEAM 538



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 152/366 (41%), Gaps = 59/366 (16%)

Query: 78  MIHMQPTPF---MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           ++HM+   F   +  FN++L AL             ERL   G  P+ V+ N+ ++  CK
Sbjct: 201 LLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCK 260

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN--- 191
              V +A+  L  ++    +PDV+T   +I G C  G+  +A  +FT+ +  +C P+   
Sbjct: 261 AGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVT 320

Query: 192 ----------------------------VIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
                                        IP +  Y  ++D +C    V     ++  MK
Sbjct: 321 FMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMK 380

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP------ 277
            +   PDA  Y  LI+  C A   ++AK        +  + V  NG    ICH       
Sbjct: 381 RKKRQPDANTYAPLIQCLCRARRVDEAKEFLDV---MEADNVVPNG---AICHALVEVLC 434

Query: 278 ---DVLSYCSIINS---LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
              +V   CS++++   +CK    D+A E+   M  +G+ PD   Y +++   C + R+D
Sbjct: 435 KQGEVDEACSVLDNVVEICKAGEPDEAVEVIEQMVLKGVRPDEATYVAVLRSLCGLDRVD 494

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAA 391
            A   F  + S GC P   +Y  LI      +  ++A  ++  M++ G  P        A
Sbjct: 495 SAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADDAFRIFEAMVAAGFTPQ-------A 547

Query: 392 ELFRTL 397
           +  RTL
Sbjct: 548 QTMRTL 553



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 22/123 (17%)

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           ++  +++G CK+ ++  A+EL  ++   G + +V+ ++ +I GLC +G I++A +    M
Sbjct: 1   MYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM 60

Query: 468 EE-----------------KIRECLKAIELLHKMAKRY-----VKPDEITVSILEELLNK 505
            E                 K     + +EL   M KRY      +PD I+ S + + L K
Sbjct: 61  GEECSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCK 120

Query: 506 DEN 508
            + 
Sbjct: 121 AQR 123


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 122/443 (27%), Positives = 195/443 (44%), Gaps = 48/443 (10%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N L+  L  +K Y     + E +   G+ P+  S NIL+  F +     DA      +
Sbjct: 121 TYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIM 180

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
            RK   PD+ T   L+  LC  G   +A  +F + +A    P   P+   + +++  L K
Sbjct: 181 KRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVP---PDRALHTAMVRTLLK 237

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
              V + R +F  M+  G  PDA  YN++I     A       G+   AL++ +      
Sbjct: 238 AKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKA-------GHAQEALKVLDNM---- 286

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
             L   C P  ++Y  ++NSLCK   +++A+ELF  M + G  P+ V+Y+SLI G+   G
Sbjct: 287 --LAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSG 344

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---- 384
           R+ +A  LF  +   G  PD  ++  +I+   K    E+A   + EM+  G +P+     
Sbjct: 345 RMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYT 404

Query: 385 ------SCILEAAELFRTLHNTKFEL---DLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
                 S I   A  FR +          D   + CL+DG CK  RL  A +L  +L + 
Sbjct: 405 TIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKC 464

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL-------------------K 476
              PN+  Y+ ++ GLC  G +EK  D L +  +   E L                   +
Sbjct: 465 SSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDE 524

Query: 477 AIELLHKMAKRYVKPDEITVSIL 499
           A  +  +M     KPD  T +IL
Sbjct: 525 ACRIFQRMVSEGCKPDATTYNIL 547



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 170/375 (45%), Gaps = 33/375 (8%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           ++   G  PD ++ N +++   K     +A   L  +L K   P  VT G L+  LC  G
Sbjct: 250 QMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAG 309

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
               A  LF    A   RPN +     Y S+I G  K G + +   LF +M   G  PD 
Sbjct: 310 TLERAEELFRVMAASGFRPNSV----IYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDV 365

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
             +  +I   C + N+E A  +        EE + G       C P+V++Y +II  L K
Sbjct: 366 ITHTVMIDGLCKSGNFEQAAKS-------FEEMMRGG------CKPNVVTYTTIIQGLSK 412

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
              V  A  +   M + G  PD V Y  L+DG+C +GR+D+A +L   ++     P+   
Sbjct: 413 IGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQL 472

Query: 352 YNTLINSY---SKIEKVEEALSLYGEMISMGVRPDNSCIL-----------EAAELFRTL 397
           Y++L+N       +EK  + L    +  +  + P   C +           EA  +F+ +
Sbjct: 473 YSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRM 532

Query: 398 HNTKFELDLTVFNCLVDGLCKSW--RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            +   + D T +N L++GLC+S   R+  A+ L   L + G  P+ VTYT +  GLC  G
Sbjct: 533 VSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIG 592

Query: 456 GIEKAYDLLPDMEEK 470
            +++A  +L +   +
Sbjct: 593 EVDRAVKMLEEASSR 607



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 120/421 (28%), Positives = 196/421 (46%), Gaps = 32/421 (7%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           KSG  E   A   F  M+     P + ++ +++  L+      N   + + +   G  PD
Sbjct: 377 KSGNFE--QAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPD 434

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA-SGLF 180
            V+   L++ FCK+  + +A   L  + +   SP++     L+ GLC  G   +    LF
Sbjct: 435 SVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLF 494

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            +  A      + P + C  SII GLCK G +++   +F  M   G  PDA  YN LI  
Sbjct: 495 EQSKA--AAETLDPGLCC--SIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILING 550

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
            C      + +   + AL LH+  +   G L     PD ++Y  +   LCK   VD+A +
Sbjct: 551 LC---RSRENRVERAFAL-LHD--LEKVGYL-----PDAVTYTPLCIGLCKIGEVDRAVK 599

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           +  +  SRG   DVV Y++L  G C  G++D A  LF  +  +G  PD ++Y  +IN   
Sbjct: 600 MLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLI 659

Query: 361 KIEKVEEALSLYGEMISMGVRPDNS-------CILEAAELFRTLHN-----TKFEL--DL 406
           K++K+E+A   + EMI  G +P  +        +  A  +    H       + EL   +
Sbjct: 660 KVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSV 719

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
            +++ L+ G CK+ ++ +A +LF+ +   G  P  VT   +  GL   G  EKA +LL +
Sbjct: 720 MIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQE 779

Query: 467 M 467
           M
Sbjct: 780 M 780



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 136/310 (43%), Gaps = 18/310 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIGLLPDFVS 124
            L++A   F  M+     P   ++N L+  L  + +        L   L  +G LPD V+
Sbjct: 521 RLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVT 580

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
              L    CK+  V  A   L     + ++ DVV    L  GLC QG+   A  LF + V
Sbjct: 581 YTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMV 640

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
               R    P+   Y  II+GL K   +      F +M G+G  P    Y +L++  C A
Sbjct: 641 ----RQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHA 696

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                  GN   A    E  +   GEL       V+ Y ++I+  CK + VD A +LF D
Sbjct: 697 -------GNVDEAFHRFESML-ARGEL----VGSVMIYDALIHGFCKALKVDAALKLFED 744

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M SRG +P  V  +SL DG    G+ + A++L   + + G  P  +++  +++   K ++
Sbjct: 745 MISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDE 804

Query: 365 VEEALSLYGE 374
             + L L  E
Sbjct: 805 SGKLLKLVQE 814



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 128/275 (46%), Gaps = 20/275 (7%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMI--GVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           +R+ + G  PD  + NIL+N  C+     V  AF  L  + +  + PD VT   L  GLC
Sbjct: 530 QRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLC 589

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
             G+   A     K +          +V+ Y ++  GLC  G V++   LF +M  +G  
Sbjct: 590 KIGEVDRA----VKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGA 645

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           PDA         YCC +N          A +  +E + G G+      P V +Y +++ +
Sbjct: 646 PDA-------AAYCCIINGLIKVKKLEDACKFFDEMI-GKGQ-----KPTVATYTALVQA 692

Query: 289 LCKDVLVDKAKELFLDMKSRG-IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
           LC    VD+A   F  M +RG ++  V++Y +LI G+C   ++D A KLF  + S G +P
Sbjct: 693 LCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVP 752

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
              +  +L +   +  K E+A  L  EM + G  P
Sbjct: 753 TAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPP 787



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 117/277 (42%), Gaps = 33/277 (11%)

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
           F    GE     H DV +Y  ++N L  +    +   +  +M   GI P+   ++ LI  
Sbjct: 105 FFRWAGEQAGFQH-DVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRS 163

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG-VRP 382
           +    R DDA   F  ++ + C PD  ++  L++   K    E+A  ++ EM++MG V P
Sbjct: 164 FARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPP 223

Query: 383 DNSC-------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
           D +              + EA E+F  +    F  D   +N ++DGL K+   + A ++ 
Sbjct: 224 DRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVL 283

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME------------------EKI 471
             +      P  VTY +++  LC  G +E+A +L   M                    K 
Sbjct: 284 DNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKS 343

Query: 472 RECLKAIELLHKMAKRYVKPDEITVSILEELLNKDEN 508
               +A  L  +M +   +PD IT +++ + L K  N
Sbjct: 344 GRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGN 380


>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 127/476 (26%), Positives = 194/476 (40%), Gaps = 99/476 (20%)

Query: 71  ALCFFNY----------MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           ALC FN           M      P    + +L+ AL+ K      + L E +  +G +P
Sbjct: 227 ALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMP 286

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC------------ 168
           D  + N +++  CK+  + DA   + R+L + F PD +T G L+ GLC            
Sbjct: 287 DVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKIL 346

Query: 169 -------------------MQGKFTEASGLFTK-FVAFDCRPNVI--------------- 193
                              M G+  EA     +  + F  +P++                
Sbjct: 347 IKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSL 406

Query: 194 ----------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
                           PNVI YA +++GLCK G + +  ++  +M  RG+  ++ +YN L
Sbjct: 407 SFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCL 466

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           I   C        K     AL L  E           C PD+ +Y S+I  LCK   +D+
Sbjct: 467 ICALC-------RKEKVHVALNLLSEMCTKG------CKPDLFTYNSLIYGLCKVDRIDE 513

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A  LF +M   G + + V Y++LI      G    A  L   +   GC  D  +YN LI 
Sbjct: 514 AFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIK 573

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDN-SC------------ILEAAELFRTLHNTKFEL 404
           ++ K+  +E+ L LY +MI  G+  D  SC            +  A E  R   N  F  
Sbjct: 574 AFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVP 633

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
           D+  +N +++GLCK  R++ A  LF +L   G  P+  TY   I   C EG +  A
Sbjct: 634 DIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDA 689



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 152/333 (45%), Gaps = 59/333 (17%)

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
           V P V  +  ++  LC    V+    L  DM   G  P++ VY +LI            K
Sbjct: 214 VSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHAL-------SQK 266

Query: 252 GNTSAALELHEE-FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
              S AL+L EE FV G       C PDV ++  +I+ LCK   +  A +L   M  RG 
Sbjct: 267 NQVSEALKLLEEMFVMG-------CMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGF 319

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
            PD + Y  L+ G C +G++++ARK+ + I      P+ +  NTLIN Y    +++EA S
Sbjct: 320 YPDNMTYGFLLHGLCRIGKLNEARKILIKIPC----PNNAILNTLINGYVMSGQLKEAQS 375

Query: 371 LYGE-MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
              E MI+ G +PD                      +  +N L+ GLCK   L  A +L 
Sbjct: 376 FLNETMINFGFQPD----------------------IFTYNILMHGLCKEGSLSFARDLV 413

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYV 489
            ++ R G EPNV+TY +++ GLC  G +E+A                   +LH+M+ R +
Sbjct: 414 NEMSRRGCEPNVITYAILVNGLCKAGLLEEAG-----------------LVLHEMSARGL 456

Query: 490 KPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
             + +  + L   L + E  H  +NLL    ++
Sbjct: 457 TINSVIYNCLICALCRKEKVHVALNLLSEMCTK 489



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 90/269 (33%), Positives = 125/269 (46%), Gaps = 19/269 (7%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL  + V  N L+   C+   V  A   L  +  K   PD+ T   LI GLC   +  EA
Sbjct: 455 GLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEA 514

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             LF   +        + N + Y ++I  L + G   K   L  DM  RG   D   YN 
Sbjct: 515 FRLFHNMLL----DGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNG 570

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFV-NGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           LI+ +C         GN    LEL+E+ + +G G        D +S   +IN LCK   V
Sbjct: 571 LIKAFC-------KVGNIEKGLELYEQMIMDGLG-------ADTISCNIMINGLCKVGKV 616

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           D A E   D  +RG +PD+V Y+S+++G C +GRI +A  LF  ++ EG  PD  +YNT 
Sbjct: 617 DNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTF 676

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDN 384
           I+   K   V +A S +   I  G  P N
Sbjct: 677 ISWQCKEGMVNDACSFFYRGIENGFVPSN 705



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 163/351 (46%), Gaps = 42/351 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G +P+ +    L++   +   VS+A   L  +      PDV T   +I GLC   K  +A
Sbjct: 248 GCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDA 307

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
           + L  + +         P+ + Y  ++ GLC+ G +N+ R + + +      P+  + N+
Sbjct: 308 TKLVDRMLL----RGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIP----CPNNAILNT 359

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI  Y  +   ++A+        L+E  +N   +      PD+ +Y  +++ LCK+  + 
Sbjct: 360 LINGYVMSGQLKEAQS------FLNETMINFGFQ------PDIFTYNILMHGLCKEGSLS 407

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A++L  +M  RG  P+V+ Y+ L++G C  G +++A  +   + + G   ++  YN LI
Sbjct: 408 FARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLI 467

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
            +  + EKV  AL+L  EM + G +P                      DL  +N L+ GL
Sbjct: 468 CALCRKEKVHVALNLLSEMCTKGCKP----------------------DLFTYNSLIYGL 505

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           CK  R+  A+ LF  +   G   N VTY  +I  L   G  +KA  L+ DM
Sbjct: 506 CKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDM 556



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/351 (29%), Positives = 154/351 (43%), Gaps = 81/351 (23%)

Query: 218 LFLDMKGRGIYPDAFVYN----------------SLIR------------VYCCAVNWED 249
           +F DM  +G+ P  F +                 SL+R            VY   ++   
Sbjct: 205 VFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALS 264

Query: 250 AKGNTSAALELHEE-FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
            K   S AL+L EE FV G       C PDV ++  +I+ LCK   +  A +L   M  R
Sbjct: 265 QKNQVSEALKLLEEMFVMG-------CMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLR 317

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G  PD + Y  L+ G C +G++++ARK+ + I      P+ +  NTLIN Y    +++EA
Sbjct: 318 GFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPC----PNNAILNTLINGYVMSGQLKEA 373

Query: 369 LSLYGE-MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
            S   E MI+ G +P                      D+  +N L+ GLCK   L  A +
Sbjct: 374 QSFLNETMINFGFQP----------------------DIFTYNILMHGLCKEGSLSFARD 411

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-------IRECL----- 475
           L  ++ R G EPNV+TY +++ GLC  G +E+A  +L +M  +       I  CL     
Sbjct: 412 LVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALC 471

Query: 476 ------KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
                  A+ LL +M  +  KPD  T + L   L K +   E   L  + L
Sbjct: 472 RKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNML 522



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 82/176 (46%), Gaps = 4/176 (2%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            +++A   F+ M+         ++N+L+ AL  +  +   + L   +   G   D ++ N
Sbjct: 510 RIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYN 569

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+  FCK+  +        +++      D ++   +I GLC  GK   A     +F+  
Sbjct: 570 GLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNA----FEFLRD 625

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
                 +P+++ Y S+++GLCK G + +   LF  ++  G+ PDAF YN+ I   C
Sbjct: 626 AINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQC 681



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 106/261 (40%), Gaps = 47/261 (18%)

Query: 260 LHEEFVNGNGELGVICHPDVLSYCSI--INSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
           L E F    G+ G  CH   + Y  I  + ++ K  L+DK   L + MK  GI+    ++
Sbjct: 95  LLEIFERVGGQKGY-CHTFDVYYVFINKLGAIGKFKLIDK---LLMQMKEEGIVFRESIF 150

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEG-CIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
             ++  Y   G+   A +L + + +   C P   SY+ ++         + A +++ +M+
Sbjct: 151 MIIMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFKSYDLVLEILVTGNCPQVATNVFYDML 210

Query: 377 SMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
           S GV P                 T F      F  ++  LC    + SA  L + + ++G
Sbjct: 211 SKGVSP-----------------TVF-----TFGIVMKALCMFNEVDSACSLLRDMTKHG 248

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLL---------PDMEE---------KIRECLKAI 478
             PN + Y  +I  L  +  + +A  LL         PD++          K+ +   A 
Sbjct: 249 CVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDAT 308

Query: 479 ELLHKMAKRYVKPDEITVSIL 499
           +L+ +M  R   PD +T   L
Sbjct: 309 KLVDRMLLRGFYPDNMTYGFL 329


>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
          Length = 948

 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 117/454 (25%), Positives = 201/454 (44%), Gaps = 69/454 (15%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           + +A    N M+ M     + +F+ ++  + G         L +R+ T G +P  ++   
Sbjct: 226 VTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGF 285

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+   C++    +A   LGR    V   +VV    +I G   +GK  EA+ L+       
Sbjct: 286 LLQGLCRVRQADEARAMLGR----VPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKG 341

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C+P+       Y+ ++ GLCK G ++    L  +M+ +G  P+   Y  ++  +C    W
Sbjct: 342 CQPDAH----TYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMW 397

Query: 248 EDAKG----NTSAALELHEEFVNG-----------NGELGVI-------CHPDVLSYCSI 285
           +D +      ++  L L+ +  NG           +  +G+I       C+PD+ SY +I
Sbjct: 398 DDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTI 457

Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
           I  LC +  +++A+ +F ++   G++ + + Y+++I      GR  DA +L   +   GC
Sbjct: 458 IYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGC 517

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELD 405
             D  SYN LI +  K   V+ +L L  EM   G++P+N                     
Sbjct: 518 SLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNN--------------------- 556

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
              +N L+  LCK  R+R A EL K++   G  P++VTY  +I GLC  G +        
Sbjct: 557 -VSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMH------- 608

Query: 466 DMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                      A+ LL K+    V PD IT +IL
Sbjct: 609 ----------AALNLLEKLHNENVHPDIITYNIL 632



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 129/495 (26%), Positives = 219/495 (44%), Gaps = 57/495 (11%)

Query: 70  DALCFFNYMIH---MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           DAL  +  M+H   + PT F  +F     AL         + L   +   G +PD V   
Sbjct: 157 DALALYRRMVHRDRVPPTTF--TFGVAARALCRLGRANEALALLRGMARHGCVPDAVLYQ 214

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            +++  C   GV++A   L  +L    + DV T   ++RG+C  G+  EA+ L  + +  
Sbjct: 215 TVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTK 274

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C    +P V+ Y  ++ GLC+    ++ R     M GR    +  ++N++I   C    
Sbjct: 275 GC----MPGVMTYGFLLQGLCRVRQADEARA----MLGRVPELNVVLFNTVIG-GCL--- 322

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
              A+G  + A EL+E      G  G  C PD  +Y  +++ LCK   +  A  L  +M+
Sbjct: 323 ---AEGKLAEATELYETM----GLKG--CQPDAHTYSILMHGLCKLGRISSAVRLLREME 373

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            +G  P+VV Y+ ++  +C  G  DD R L   + ++G   ++  YN +I +  K  +++
Sbjct: 374 KKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMD 433

Query: 367 EALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLV 413
           EA+ L  EM S G  PD             N  + EA  +F  L       +   +N ++
Sbjct: 434 EAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTII 493

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI-- 471
             L +  R + A  L K++  +G   +VV+Y  +I  +C +G ++++  LL +M EK   
Sbjct: 494 HALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIK 553

Query: 472 ----------------RECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
                           R    A+EL  +M  + + PD +T + L   L K    H  +NL
Sbjct: 554 PNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNL 613

Query: 516 LPSFLSRNQEESKLT 530
           L    + N     +T
Sbjct: 614 LEKLHNENVHPDIIT 628



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 159/355 (44%), Gaps = 30/355 (8%)

Query: 90  FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149
           FN+++G    +        L E +   G  PD  + +ILM+  CK+  +S A   L  + 
Sbjct: 314 FNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREME 373

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD 209
           +K F+P+VVT   ++   C  G + +   L  +  A      +  N   Y  +I  LCKD
Sbjct: 374 KKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSA----KGLTLNSQGYNGMIYALCKD 429

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
           G +++   L  +M+ +G  PD   YN++I   C     E+A+        L EE V  NG
Sbjct: 430 GRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFE---NLLEEGVVANG 486

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
                     ++Y +II++L +D     A  L  +M   G   DVV Y+ LI   C  G 
Sbjct: 487 ----------ITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGN 536

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NS 385
           +D +  L   +  +G  P+  SYN LI+   K  +V +AL L  +M++ G+ PD    N+
Sbjct: 537 VDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNT 596

Query: 386 CI--------LEAA-ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
            I        + AA  L   LHN     D+  +N L+   CK   L  A  L  +
Sbjct: 597 LINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNR 651



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 21/124 (16%)

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFE 403
           G  P   SYN +++  ++ +   +AL+LY  M+                     H  +  
Sbjct: 134 GVQPSFRSYNVVLSVLARADCHADALALYRRMV---------------------HRDRVP 172

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
                F      LC+  R   A  L + + R+G  P+ V Y  +I  LC +GG+ +A  L
Sbjct: 173 PTTFTFGVAARALCRLGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATL 232

Query: 464 LPDM 467
           L +M
Sbjct: 233 LNEM 236



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 2/127 (1%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G V+   +L     M      P   S+N L+  L  ++   + + LS+++   GL PD
Sbjct: 533 KDGNVD--RSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPD 590

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+ N L+N  CKM  +  A   L ++  +   PD++T   LI   C      +A+ L  
Sbjct: 591 IVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLN 650

Query: 182 KFVAFDC 188
           + +A  C
Sbjct: 651 RAMAAVC 657


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 185/396 (46%), Gaps = 68/396 (17%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G +PD V+ N L+   C    +S+AFV    + +    P+V++   L+ GLC  G+  EA
Sbjct: 139 GCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEA 198

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L+ + V   C    +P+++ Y S + GLCK   V +       M  +G   DA  +++
Sbjct: 199 CRLWEEMVEKSC----VPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFST 254

Query: 237 LIRVYCCAVNWEDAK----------GNTSAALELHEEFVNGN----GEL----------- 271
           +I + C   + E+A+          G    A +  EE ++ N     EL           
Sbjct: 255 VIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKS 314

Query: 272 -----GVI------------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
                GV+            C P++ +Y  ++++LCK   +D+A+EL  +M + G+ PDV
Sbjct: 315 KRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDV 374

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           V YS+L+DG C +G++D A  L   +  EG  PD+ +  +++N+ SK  KV+ ALS    
Sbjct: 375 VTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLET 434

Query: 375 MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
           M + G  P                      DL  +N L+DGLCK+ R+  A     K+  
Sbjct: 435 MKARGSTP----------------------DLVTYNTLLDGLCKAGRIDEAITFLAKMVA 472

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
               P+V +YT++I  LC  G    A+ +  +M ++
Sbjct: 473 AKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKR 508



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 119/448 (26%), Positives = 194/448 (43%), Gaps = 73/448 (16%)

Query: 130 NCFCKMIGVSDA----FVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           NCF   +  ++A    +    ++ R+ + PD  T   ++RGLC  G+  +A  L  +   
Sbjct: 42  NCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLR- 100

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK-GRGIYPDAFVYNSLIRVYCCA 244
                 V  NVI Y+ +IDG CK   V+    +F  M  G G  PD   +NSL++  C  
Sbjct: 101 ---ESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLC-- 155

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                +    S A  L E            C P+V+SY ++++ LCK   +D+A  L+ +
Sbjct: 156 -----SGERMSEAFVLFEYMAKAG------CEPNVISYSTLLDGLCKAGRLDEACRLWEE 204

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M  +  +PD+V Y+S + G C   R+ +A      + ++G   D  +++T+I    K   
Sbjct: 205 MVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGH 264

Query: 365 VEEALSLYGEMISMGVRPDNSCIL----------EAAELFRTLHNTK------------F 402
            EEA +   E +      D +C             +AELF TL +              F
Sbjct: 265 AEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLF 324

Query: 403 EL-----------DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
           +            +L  +N +VD LCK+ +L  A EL  ++  YG  P+VVTY+ ++ GL
Sbjct: 325 QRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGL 384

Query: 452 CIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDE 493
           C  G +++A DLL +M +                  K  +   A+  L  M  R   PD 
Sbjct: 385 CKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDL 444

Query: 494 ITVSILEELLNKDENCHECMNLLPSFLS 521
           +T + L + L K     E +  L   ++
Sbjct: 445 VTYNTLLDGLCKAGRIDEAITFLAKMVA 472



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 122/470 (25%), Positives = 194/470 (41%), Gaps = 79/470 (16%)

Query: 63  SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF 122
           SGE  +++A   F YM      P + S+++LL  L           L E +     +PD 
Sbjct: 156 SGE-RMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDL 214

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG---- 178
           V+    +   CK   V++A     +++ K    D V    +I  LC +G   EA      
Sbjct: 215 VAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIE 274

Query: 179 ----------------------------LFTKFVAFDCR----PNVI------------- 193
                                       LF   +   C+    P+ +             
Sbjct: 275 HLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFY 334

Query: 194 --PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
             PN+  Y  ++D LCK   +++ + L  +M   G+ PD   Y++L+   C         
Sbjct: 335 CPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLC-------KL 387

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
           G    A +L EE      + GV   PD  +  SI+N+L K   VD A      MK+RG  
Sbjct: 388 GKLDRACDLLEEM----SKEGVF--PDSFTDASILNALSKAGKVDYALSHLETMKARGST 441

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           PD+V Y++L+DG C  GRID+A      + +  C PD  SY  +I +  +  +   A ++
Sbjct: 442 PDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAI 501

Query: 372 YGEMISMGVRPDN---SCILEAAELFRT-LHNTKFEL--------DLTVFNCLVDGLCKS 419
           + EM+  GV PD      +L+   L R  L +   EL        D  +   +VDGLCK+
Sbjct: 502 FQEMVKRGVLPDTVLYHSLLDG--LARNGLEDLALELLKTSLCKPDFVMHKMVVDGLCKA 559

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
            +   A E+ +++   G   +  TY  ++ GL   G ++KA  L+ D  E
Sbjct: 560 GKAEDACEVVERMADAGFPADAFTYINVVRGLRKLGKVDKARQLVDDASE 609



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 180/414 (43%), Gaps = 72/414 (17%)

Query: 142 FVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYAS 201
           F  LGR  +K +   V T  C +  L    K       + KF     R    P+   Y+ 
Sbjct: 25  FDWLGR--QKGYQHSVFTYNCFLDAL---AKANAGQLAYEKFQQMQ-RRGYPPDDFTYSI 78

Query: 202 IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261
           ++ GLCK G ++K + L   ++  G+  +   Y+ +I   C A   +DA       LE+ 
Sbjct: 79  VLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDA-------LEIF 131

Query: 262 EEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
           +    G G     C PDV+++ S++  LC    + +A  LF  M   G  P+V+ YS+L+
Sbjct: 132 KTMSAGGG-----CVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLL 186

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
           DG C  GR+D+A +L+  +  + C+PD  +Y + +    K  +V EA     +M++ G +
Sbjct: 187 DGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSK 246

Query: 382 PD------------------------------NSCILEAAELFRTLHNTKFELDLTVFNC 411
            D                              +  + EA + F  + +        +FN 
Sbjct: 247 ADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNT 306

Query: 412 LVDGLCKSWRLRSAWELFKKLPR----YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           L+  +CKS RL     LF+++      Y P PN+ TY +M+  LC    +++A +L+ +M
Sbjct: 307 LIHAVCKSKRLPDGVLLFQRMKSMKEFYCP-PNLETYNIMVDNLCKAKQLDEAQELVNEM 365

Query: 468 EE------------------KIRECLKAIELLHKMAKRYVKPDEIT-VSILEEL 502
                               K+ +  +A +LL +M+K  V PD  T  SIL  L
Sbjct: 366 ANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNAL 419


>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
 gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
          Length = 991

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 121/444 (27%), Positives = 191/444 (43%), Gaps = 75/444 (16%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GLLPD V+ N ++  +CK   ++ A      +L     P+  T   L+ G C  G+  +A
Sbjct: 178 GLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKA 237

Query: 177 SGLFTKFVAFDCRPNVI-------------------------------PNVICYASIIDG 205
             LF       C+ N                                 PNV  +  +I G
Sbjct: 238 CWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISG 297

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
           LCK G V   R+LF  M   G+ P    YN++I  Y          G  + AL++ +E +
Sbjct: 298 LCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGY-------SKLGRMNDALKI-KELM 349

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
             NG     CHPD  +Y ++I  LC D   ++A+EL  +    G  P VV +++LI+GYC
Sbjct: 350 EKNG-----CHPDDWTYNTLIYGLC-DQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYC 403

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP--- 382
           +  + DDA ++   + S  C  D   +  LINS  K ++++EA  L  E+ + G+ P   
Sbjct: 404 MAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVI 463

Query: 383 ------DNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
                 D  C    +  A E+ + +     + +   +N L+ GL K  +L  A  L  K+
Sbjct: 464 TYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKM 523

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPD 492
            + G  PNV+TYT ++ G C E   + A+ L   ME+                   +KPD
Sbjct: 524 QKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQN-----------------GLKPD 566

Query: 493 EITVSILEELLNKDENCHECMNLL 516
           E   ++L + L K     E  + +
Sbjct: 567 EHAYAVLTDALCKAGRAEEAYSFI 590



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 115/431 (26%), Positives = 188/431 (43%), Gaps = 66/431 (15%)

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           S  IL+   C    V  A V    + R   SP+V     LI GLC  G+  +A  LF   
Sbjct: 255 SYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLF--- 311

Query: 184 VAFDCRPN--VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
              D  P   V+P+V+ Y ++I G  K G +N    +   M+  G +PD + YN+LI   
Sbjct: 312 ---DAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGL 368

Query: 242 CCAVNWEDAKGNTSAALE-----------------LHEEFVNG----NGELGVICHPDVL 280
           C     E  +   +A  E                 + E+F +     N  +   C  D+ 
Sbjct: 369 CDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQ 428

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
            +  +INSL K   + +AKEL  ++ + G++P+V+ Y+S+IDGYC  G++D A ++   +
Sbjct: 429 VFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMM 488

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNT 400
           E +GC P+  +YN+L+    K +K+ +A++L  +M   G+ P                  
Sbjct: 489 ERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIP------------------ 530

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
               ++  +  L+ G C      +A+ LF+ + + G +P+   Y V+   LC  G  E+A
Sbjct: 531 ----NVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEA 586

Query: 461 YDL---------------LPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505
           Y                 L D   K      A  L+ +M      PD  T S+L   L K
Sbjct: 587 YSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCK 646

Query: 506 DENCHECMNLL 516
            +  +E + +L
Sbjct: 647 QKRLNEALPIL 657



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 116/455 (25%), Positives = 188/455 (41%), Gaps = 64/455 (14%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           + +DAL   N M+  +    +  F  L+ +L  K        L   ++  GL+P+ ++  
Sbjct: 407 KFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYT 466

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            +++ +CK   V  A   L  + R    P+  T   L+ GL    K  +A  L TK    
Sbjct: 467 SIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQ-- 524

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             +  +IPNVI Y +++ G C +   +    LF  M+  G+ PD   Y  L    C A  
Sbjct: 525 --KDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGR 582

Query: 247 WEDA-------------------------KGNTSAALELHEEFVNGNGELGVICHPDVLS 281
            E+A                          GNT  A  L E  ++        C PD  +
Sbjct: 583 AEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEG------CTPDSYT 636

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y  ++++LCK   +++A  +   M  RGI   +  Y+ LID     G+ D A++++  + 
Sbjct: 637 YSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMT 696

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------NSC-----IL 388
           S G  P  ++Y   INSY K  ++E+A  L  +M   GV PD        + C     I 
Sbjct: 697 SSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYID 756

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKS-------------WRLRS---AWELFKKL 432
            A    + +     E +   +  L+  L K              W L      W+L +++
Sbjct: 757 RAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERM 816

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            ++G  P V TY+ +I G C  G +E+A  LL  M
Sbjct: 817 VKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHM 851



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 178/401 (44%), Gaps = 41/401 (10%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           TP + +F +L+      + + + + +  ++ +     D      L+N   K   + +A  
Sbjct: 389 TPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKE 448

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
            L  I      P+V+T   +I G C  GK   A  +        C+PN       Y S++
Sbjct: 449 LLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWT----YNSLM 504

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
            GL KD  ++K   L   M+  GI P+   Y +L++  C   +++    N     E+ E+
Sbjct: 505 YGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFD----NAFRLFEMMEQ 560

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
             NG         PD  +Y  + ++LCK     +A+E +  +  +G+    V Y++LIDG
Sbjct: 561 --NG-------LKPDEHAYAVLTDALCK---AGRAEEAYSFIVRKGVALTKVYYTTLIDG 608

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           +   G  D A  L   +  EGC PD+ +Y+ L+++  K +++ EAL +  +M   G++  
Sbjct: 609 FSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIK-- 666

Query: 384 NSCIL-----------------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
             C +                  A  ++  + ++  +   T +   ++  CK  RL  A 
Sbjct: 667 --CTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAE 724

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +L  K+ R G  P+VVTY ++I G    G I++A+  L  M
Sbjct: 725 DLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRM 765



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 89/378 (23%), Positives = 146/378 (38%), Gaps = 55/378 (14%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L ER+   G  PD  + ++L++  CK   +++A   L ++  +     +     LI  + 
Sbjct: 621 LIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEML 680

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
            +GK   A  ++ +  +   +P+       Y   I+  CK+G +     L L M+  G+ 
Sbjct: 681 REGKHDHAKRMYNEMTSSGHKPSATT----YTVFINSYCKEGRLEDAEDLILKMEREGVA 736

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           PD   YN LI          D  G+      +   F      +G  C P+  +YC ++  
Sbjct: 737 PDVVTYNILI----------DGCGHMGY---IDRAFSTLKRMVGASCEPNYWTYCLLLKH 783

Query: 289 LCKDVL----------------VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
           L K  L                +D   +L   M   G+ P V  YSSLI G+C  GR+++
Sbjct: 784 LLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEE 843

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392
           A  L   +  +G  P+   Y  LI      +  E+ALS    M   G +P          
Sbjct: 844 ACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQP---------- 893

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
                        L  +  LV GLC          LF  L   G   + V + ++  GL 
Sbjct: 894 ------------QLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLL 941

Query: 453 IEGGIEKAYDLLPDMEEK 470
             G ++  + +L  ME++
Sbjct: 942 KAGYVDICFQMLSIMEKR 959



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 13/201 (6%)

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y   + SL +  + +    ++  +   G++PD V Y+++I  YC  G +  A + F  + 
Sbjct: 151 YNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLL 210

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP-------------DNSCIL 388
             G  P+T + N L+  Y +  ++ +A  L+  M  MG +              D  C+ 
Sbjct: 211 EGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVR 270

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
           +A  LF  +       ++  F  L+ GLCKS R+  A  LF  +P+ G  P+V+TY  MI
Sbjct: 271 KALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMI 330

Query: 449 CGLCIEGGIEKAYDLLPDMEE 469
            G    G +  A  +   ME+
Sbjct: 331 VGYSKLGRMNDALKIKELMEK 351



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 111/259 (42%), Gaps = 27/259 (10%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVT----LGCLIRGLCMQGK 172
           G+ PD V+ NIL++    M  +  AF  L R++     P+  T    L  L++G     +
Sbjct: 734 GVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVR 793

Query: 173 FTEASGLFTKFVAFDCRPNVI---------PNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
             + SG++   +  D    ++         P V  Y+S+I G CK G + +  +L   M 
Sbjct: 794 SVDTSGMWN-LIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMC 852

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
           G+G+ P+  +Y  LI+  CC   +           E    FV+   E G    P + SY 
Sbjct: 853 GKGLSPNEDIYTLLIKC-CCDTKF----------FEKALSFVSIMSECGF--QPQLESYR 899

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
            ++  LC +   +K K LF D+   G   D V +  L DG    G +D   ++   +E  
Sbjct: 900 LLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQMLSIMEKR 959

Query: 344 GCIPDTSSYNTLINSYSKI 362
            C   + +Y  + N   ++
Sbjct: 960 YCCISSQTYALVTNKMHEV 978


>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
          Length = 667

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 207/469 (44%), Gaps = 61/469 (13%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +++A+  F  M      P M  + +L+  L   +     + +  R+  +G  P   +   
Sbjct: 61  IDEAVELFGEM----DQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAA 116

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           +++  C+     +A   L  +  K  +P VVT   +I   C +G+ ++A  +        
Sbjct: 117 VVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRG 176

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C+PNV      Y +++ G C +G V+K   L   M+  G+ PDA  YN LIR  C     
Sbjct: 177 CKPNVWT----YNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCI---- 228

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               G+  +A  L    + G+G +      D  +Y ++IN+LCKD   D+A  LF  +++
Sbjct: 229 ---DGHIESAFRLLR-LMEGDGLIA-----DQYTYNALINALCKDGRTDQACSLFDSLET 279

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           RGI P+ V ++SLI+G C  G+ D A K    + S GC PDT +Y++ I    K++  +E
Sbjct: 280 RGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQE 339

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
            LS  GEM+   V+P  S +     + + L    + L           + ++W       
Sbjct: 340 GLSFIGEMLQKDVKP--STVNYTIVIHKLLKERNYGL-----------VARTW------- 379

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK------------------AYDLLPDMEE 469
              ++   G  P+VVTYT  +   CIEG + +                  AY+ L D   
Sbjct: 380 --GEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHA 437

Query: 470 KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPS 518
            I +   A+ +L +M      P++ T  IL   L +     + + L P+
Sbjct: 438 SIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPA 486



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 179/392 (45%), Gaps = 52/392 (13%)

Query: 148 ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207
           ++R  + PD  T   LI G C   +   A  LF K            +V+ YA++I+GLC
Sbjct: 1   MVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPL----RGFAQDVVSYATLIEGLC 56

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
           + G +++   LF +M      PD  +Y +L++  C      +A+      L L       
Sbjct: 57  EAGRIDEAVELFGEMD----QPDMHMYAALVKGLC------NAERGEEGLLMLRR----- 101

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
             ELG    P   +Y ++++  C++    +A+E+  +M  +G+ P VV  +++I+ YC  
Sbjct: 102 MKELG--WRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKE 159

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---- 383
           GR+ DA ++   ++  GC P+  +YN L+  +    KV +A++L  +M + GV PD    
Sbjct: 160 GRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTY 219

Query: 384 -----NSCI---LEAA-ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
                  CI   +E+A  L R +       D   +N L++ LCK  R   A  LF  L  
Sbjct: 220 NLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLET 279

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLK 476
            G +PN VT+  +I GLC  G  + A+  L  M                    K++   +
Sbjct: 280 RGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQE 339

Query: 477 AIELLHKMAKRYVKPDEITVSILEELLNKDEN 508
            +  + +M ++ VKP  +  +I+   L K+ N
Sbjct: 340 GLSFIGEMLQKDVKPSTVNYTIVIHKLLKERN 371



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 182/411 (44%), Gaps = 24/411 (5%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N+   E  ++DAL     M      P + ++N+L+     +      + L  ++   G+ 
Sbjct: 154 NAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVN 213

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V+ N+L+   C    +  AF  L  +       D  T   LI  LC  G+  +A  L
Sbjct: 214 PDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSL 273

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F    + + R  + PN + + S+I+GLCK G  +        M   G  PD + Y+S I 
Sbjct: 274 FD---SLETR-GIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIE 329

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGE-LGVICHPDVLSYCSIINSLCKDVLVDKA 298
             C        KG+        +E ++  GE L     P  ++Y  +I+ L K+      
Sbjct: 330 HLC------KMKGS--------QEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLV 375

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
              + +M S G  PDVV Y++ +  YC+ GR+++A  + + +   G   DT +YNTL++ 
Sbjct: 376 ARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDG 435

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
           ++ I + + A+S+  +M S+   P+         L R  H  +  L   V      G+ K
Sbjct: 436 HASIGQTDHAVSILKQMTSVASVPNQFTYF---ILLR--HLVRMRLVEDVLPLTPAGVWK 490

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           +  L   + LF  + +    PN  TY+ ++ G   +G  E+A  L+  M+E
Sbjct: 491 AIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKE 541



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 90/409 (22%), Positives = 165/409 (40%), Gaps = 47/409 (11%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           + A   F+ +      P   +FNSL+  L             E++ + G  PD  + +  
Sbjct: 268 DQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSF 327

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           +   CKM G  +    +G +L+K   P  V    +I  L  +  +   +  + + V+  C
Sbjct: 328 IEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGC 387

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
            P+V+     Y + +   C +G +N+   + ++M   G+  D   YN+L+  +       
Sbjct: 388 NPDVVT----YTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHA------ 437

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK-----DVL------VDK 297
            + G T  A+ + ++  +      V   P+  +Y  ++  L +     DVL      V K
Sbjct: 438 -SIGQTDHAVSILKQMTS------VASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWK 490

Query: 298 AKEL------FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
           A EL      F  MK    +P+   YSS+++G+   GR ++A  L   ++ +    +   
Sbjct: 491 AIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDI 550

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------NSCILE-----AAELFRTLH 398
           Y  L+  + K ++  +A  L   MI  G  P         +  I E     A E+F    
Sbjct: 551 YTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSR 610

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
              +  D  V+  ++DGL K      + E+   L R    P+  TY ++
Sbjct: 611 WKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQTYAML 659


>gi|222625337|gb|EEE59469.1| hypothetical protein OsJ_11675 [Oryza sativa Japonica Group]
          Length = 1095

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 108/446 (24%), Positives = 209/446 (46%), Gaps = 48/446 (10%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P   ++N++L     K    + + + + +   G+  D  + NI+++  CK+   + A++ 
Sbjct: 262 PNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLL 321

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           L R+     +PD  +   LI G   +GK   A  +F + +    R ++ P+V  Y ++ID
Sbjct: 322 LKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQML----RQSLKPSVATYTALID 377

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           G C++G  ++ R +  +M+  G+ P    Y++L+  YC              AL+L +  
Sbjct: 378 GYCRNGRTDEARRVLYEMQITGVRPSELTYSALLNGYC-------KHSKLGPALDLIKYL 430

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
            + +  +      +   Y  +I+  C+   V KAK++   M + GI PDV+ YS+LI+G 
Sbjct: 431 RSRSISI------NRTMYTILIDGFCQLGEVSKAKQILKCMLADGIDPDVITYSALINGM 484

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           C MG I + +++   ++  G +P+   Y TL+  + K    +EAL  + ++   G+  ++
Sbjct: 485 CKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANS 544

Query: 385 -------------SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
                          I EA +  + +   K   D+  FNC++D  C+   +  A+ ++  
Sbjct: 545 VIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDN 604

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP-------DMEEKIRECL--------- 475
           + R+G  P++ TY  ++ GLC  G + +A + +         ++EK    L         
Sbjct: 605 MVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGT 664

Query: 476 --KAIELLHKMAKRYVKPDEITVSIL 499
             +A++L  KM  R + PD  T +IL
Sbjct: 665 LDEALDLCEKMVTRNILPDTYTYTIL 690



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/411 (24%), Positives = 187/411 (45%), Gaps = 45/411 (10%)

Query: 89   SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
            + N+LL  +         + L E++ T  +LPD  +  IL++ FCK   V  A + L  +
Sbjct: 651  TLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMM 710

Query: 149  LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
            L K   PD +   CL+ GL  +G+   AS +F + +   C+  +  + I Y S+++G  K
Sbjct: 711  LEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEII---CKEGLYADCIAYNSMMNGYLK 767

Query: 209  DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
             G +N++  L  +M    +YP +  YN L+  Y         KG  S  L L+ + V   
Sbjct: 768  GGQINEIERLMRNMHENEVYPSSASYNILMHGYI-------KKGQLSRTLYLYRDMVKEG 820

Query: 269  GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC--- 325
                    PD ++Y  +I  LC+  L++ A +    M   G+ PD + +  LI  +    
Sbjct: 821  ------IKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKS 874

Query: 326  -------------LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
                          +G ID A +L   +++ G +P   + ++++    K  KVEEA+ ++
Sbjct: 875  KMSNALQLFSYMKWVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVF 934

Query: 373  GEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
              ++  G+ P  +              I +A  L + + +   ++D+  +N L+ GLC  
Sbjct: 935  SSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTYNVLITGLCNK 994

Query: 420  WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
              +  A +L++++   G  PN+ TY  +   +   G ++    LL D+E++
Sbjct: 995  KCICDALDLYEEMKSKGLLPNITTYITLTGAMYATGTMQDGEKLLKDIEDR 1045



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 117/465 (25%), Positives = 192/465 (41%), Gaps = 70/465 (15%)

Query: 65   EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
            E  + +A  F  YM  M+ +  + SFN ++ +   +   +    + + +   G  PD  +
Sbjct: 557  EGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICT 616

Query: 125  LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
               L+   C+   +  A   +  +L K  + D  TL  L+ G+C  G   EA  L  K V
Sbjct: 617  YGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMV 676

Query: 185  AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
                  N++P+   Y  ++DG CK G V    +L   M  +G+ PD   Y        C 
Sbjct: 677  T----RNILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLVPDTIAYT-------CL 725

Query: 245  VNWEDAKGNTSAALELHEEFV----------------NG---NGELGVI----------- 274
            +N    +G   AA  + +E +                NG    G++  I           
Sbjct: 726  LNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHENE 785

Query: 275  CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
             +P   SY  +++   K   + +   L+ DM   GI PD V Y  LI G C  G I+ A 
Sbjct: 786  VYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAV 845

Query: 335  KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG----------------EMISM 378
            K    +  EG  PD  +++ LI ++S+  K+  AL L+                 +M ++
Sbjct: 846  KFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWVGDIDGAFELKEDMKAL 905

Query: 379  GVRPDNSC-------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
            GV P                 + EA  +F ++        +  F  L+ GLCK +++  A
Sbjct: 906  GVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDA 965

Query: 426  WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            + L + +   G + +VVTY V+I GLC +  I  A DL  +M+ K
Sbjct: 966  FHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSK 1010



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 159/354 (44%), Gaps = 42/354 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G      S N ++N    +      ++ L   L + F  DV T   ++  LC QGK ++A
Sbjct: 190 GFKASLFSCNNILNALVGINKSEYVWLFLKESLDRKFPLDVTTCNIVLNSLCTQGKLSKA 249

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             +  K    +CR   +PN + Y +I++   K G       +  DM+  GI  D + YN 
Sbjct: 250 ESMLQKMK--NCR---LPNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNI 304

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHE-EFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           +I   C        K +  A L L     VN          PD  SY ++I+    +  +
Sbjct: 305 MIDKLC------KLKRSARAYLLLKRMREVN--------LTPDECSYNTLIHGFFGEGKI 350

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           + A  +F  M  + + P V  Y++LIDGYC  GR D+AR++   ++  G  P   +Y+ L
Sbjct: 351 NLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPSELTYSAL 410

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDG 415
           +N Y K  K+  AL                      +L + L +    ++ T++  L+DG
Sbjct: 411 LNGYCKHSKLGPAL----------------------DLIKYLRSRSISINRTMYTILIDG 448

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
            C+   +  A ++ K +   G +P+V+TY+ +I G+C  G I +  ++L  M++
Sbjct: 449 FCQLGEVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQK 502



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 103/451 (22%), Positives = 178/451 (39%), Gaps = 104/451 (23%)

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
            IL++ FC++  VS A   L  +L     PDV+T   LI G+C  G   E   + ++   
Sbjct: 443 TILIDGFCQLGEVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQ- 501

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL-------- 237
              +  V+PN + Y +++   CK G   +    F+D+   G+  ++ ++N+L        
Sbjct: 502 ---KSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALLCSFYREG 558

Query: 238 --------------------IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277
                               +  + C ++    +GN   A  +++  V           P
Sbjct: 559 MIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWP------P 612

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFL---------------------------------- 303
           D+ +Y S++  LC+   + +AKE  +                                  
Sbjct: 613 DICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLC 672

Query: 304 -DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
             M +R I+PD   Y+ L+DG+C  G++  A  L   +  +G +PDT +Y  L+N     
Sbjct: 673 EKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLVPDTIAYTCLLNGLVNE 732

Query: 363 EKVEEALSLYGEMI-SMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTV 408
            +V+ A  ++ E+I   G+  D                I E   L R +H  +       
Sbjct: 733 GQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSAS 792

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +N L+ G  K  +L     L++ + + G +P+ VTY ++I GLC  G IE          
Sbjct: 793 YNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIE---------- 842

Query: 469 EKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                   A++ L KM    V PD +   IL
Sbjct: 843 -------IAVKFLEKMVLEGVFPDNLAFDIL 866



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 142/328 (43%), Gaps = 57/328 (17%)

Query: 202 IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261
           +++ LC  G ++K   +   MK   + P+A  YN+++       NW   KG   +AL + 
Sbjct: 236 VLNSLCTQGKLSKAESMLQKMKNCRL-PNAVTYNTIL-------NWYVKKGRCKSALRIL 287

Query: 262 EEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
           ++ +  NG        D+ +Y  +I+ LCK     +A  L   M+   + PD   Y++LI
Sbjct: 288 DD-MEKNG-----IEADLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTLI 341

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
            G+   G+I+ A  +F  +  +   P  ++Y  LI+ Y +  + +EA  +  EM   GVR
Sbjct: 342 HGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVR 401

Query: 382 PDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
           P                      +LT ++ L++G CK  +L  A +L K L       N 
Sbjct: 402 PS---------------------ELT-YSALLNGYCKHSKLGPALDLIKYLRSRSISINR 439

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEE 501
             YT++I G C  G + KA        ++I +C+ A           + PD IT S L  
Sbjct: 440 TMYTILIDGFCQLGEVSKA--------KQILKCMLA---------DGIDPDVITYSALIN 482

Query: 502 LLNKDENCHECMNLLPSFLSRNQEESKL 529
            + K    HE        LSR Q+   L
Sbjct: 483 GMCKMGMIHET----KEILSRMQKSGVL 506



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 124/275 (45%), Gaps = 25/275 (9%)

Query: 85   PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
            P   S+N L+     K      + L   +   G+ PD V+  +L+   C+   +  A   
Sbjct: 788  PSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKF 847

Query: 145  LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT--KFV-----AFDCRPN-----V 192
            L +++ +   PD +    LI+    + K + A  LF+  K+V     AF+ + +     V
Sbjct: 848  LEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWVGDIDGAFELKEDMKALGV 907

Query: 193  IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252
            +P+ +  +SI+ GLCK G V +  ++F  +   G+ P    + +L+   C     +DA  
Sbjct: 908  VPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDA-- 965

Query: 253  NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
                    H + +  +  L V    DV++Y  +I  LC    +  A +L+ +MKS+G++P
Sbjct: 966  -------FHLKQLMESCGLKV----DVVTYNVLITGLCNKKCICDALDLYEEMKSKGLLP 1014

Query: 313  DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
            ++  Y +L       G + D  KL   IE  G +P
Sbjct: 1015 NITTYITLTGAMYATGTMQDGEKLLKDIEDRGIVP 1049



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/357 (22%), Positives = 152/357 (42%), Gaps = 55/357 (15%)

Query: 71   ALCFFNYMIHMQPTPFMPSFNSLLGALA--GKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
            AL     M+     P   ++  LL  L   G+    +++   E +   GL  D ++ N +
Sbjct: 703  ALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYM-FQEIICKEGLYADCIAYNSM 761

Query: 129  MNCFCKMIGVSDAFVALGRILRKVFS----PDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            MN + K   +++    + R++R +      P   +   L+ G   +G+ +    L+   V
Sbjct: 762  MNGYLKGGQINE----IERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMV 817

Query: 185  AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD-MKGRGIYPDAFVYNSLIRVYCC 243
                +  + P+ + Y  +I GLC+ G + ++ V FL+ M   G++PD   ++ LI+ +  
Sbjct: 818  ----KEGIKPDNVTYRLLIFGLCEYGLI-EIAVKFLEKMVLEGVFPDNLAFDILIKAFSE 872

Query: 244  AVNWEDA---------KGNTSAALELHEEFVN--------------------GNGELGVI 274
                 +A          G+   A EL E+                       G  E  +I
Sbjct: 873  KSKMSNALQLFSYMKWVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAII 932

Query: 275  CH---------PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
                       P + ++ ++++ LCK+  +D A  L   M+S G+  DVV Y+ LI G C
Sbjct: 933  VFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTYNVLITGLC 992

Query: 326  LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
                I DA  L+  ++S+G +P+ ++Y TL  +      +++   L  ++   G+ P
Sbjct: 993  NKKCICDALDLYEEMKSKGLLPNITTYITLTGAMYATGTMQDGEKLLKDIEDRGIVP 1049



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 103/246 (41%), Gaps = 40/246 (16%)

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           DV +   ++NSLC    + KA+ +   MK+   +P+ V Y+++++ Y   GR   A ++ 
Sbjct: 229 DVTTCNIVLNSLCTQGKLSKAESMLQKMKN-CRLPNAVTYNTILNWYVKKGRCKSALRIL 287

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397
             +E  G   D  +YN +I+   K+++   A  L   M  + + PD              
Sbjct: 288 DDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECS----------- 336

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                      +N L+ G     ++  A  +F ++ R   +P+V TYT +I G C  G  
Sbjct: 337 -----------YNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRT 385

Query: 458 EKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLP 517
           ++A                   +L++M    V+P E+T S L     K       ++L+ 
Sbjct: 386 DEAR-----------------RVLYEMQITGVRPSELTYSALLNGYCKHSKLGPALDLIK 428

Query: 518 SFLSRN 523
              SR+
Sbjct: 429 YLRSRS 434


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 116/408 (28%), Positives = 191/408 (46%), Gaps = 48/408 (11%)

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            ++LMN +      SDA      + +        + G L   L M+   T  +  F + +
Sbjct: 158 FSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRL-MKLNLTSPAWAFYEEI 216

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
             DC     P+V  +  ++  LCK+  +N+ ++LF ++  RG+ P    +N+LI  YC  
Sbjct: 217 -LDC--GYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYC-- 271

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                  GN      L + F+  N        PDV +Y  +IN LCK+  +D A +LFL+
Sbjct: 272 -----KSGNLDQGFRL-KRFMMENRVF-----PDVFTYSVLINGLCKEGQLDDANKLFLE 320

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M  RG++P+ V +++LI+G+C+ GR D   +++  +  +G  PD  +YNTLIN   K+  
Sbjct: 321 MCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGD 380

Query: 365 VEEALSLYGEMISMGVRPD--------NSCILE-----AAELFRTLHNTKFELDLTVFNC 411
           + EA  L  EM   G++PD        + C  E     A E+ + +     ELD   F  
Sbjct: 381 LREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTA 440

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME--- 468
           L+ G C+  ++  A    +++   G +P+  TYT++I G C +G ++  + LL +M+   
Sbjct: 441 LISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDG 500

Query: 469 ---------------EKIRECLKAIELLHKMAKRYVKPDEITVSILEE 501
                           K  +   A  LL  M    V PD+IT +IL E
Sbjct: 501 HVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLE 548



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 157/345 (45%), Gaps = 44/345 (12%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           A  F+  ++     P +  FN L+  L  +        L   +   GL P  VS N L+N
Sbjct: 209 AWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLIN 268

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL----------- 179
            +CK   +   F     ++     PDV T   LI GLC +G+  +A+ L           
Sbjct: 269 GYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVP 328

Query: 180 ----FTKFVAFDC----------------RPNVIPNVICYASIIDGLCKDGFVNKVRVLF 219
               FT  +   C                R  V P+VI Y ++I+GLCK G + + + L 
Sbjct: 329 NDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLV 388

Query: 220 LDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDV 279
           ++M  RG+ PD F Y  LI   CC       +G+  +ALE+ +E V    EL      D 
Sbjct: 389 IEMTQRGLKPDKFTYTMLIDG-CC------KEGDLESALEIRKEMVKEGIEL------DN 435

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           +++ ++I+  C++  V +A+    +M   GI PD   Y+ +I G+C  G +    KL   
Sbjct: 436 VAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKE 495

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           ++ +G +P   +YN L+N   K  +++ A  L   M+++GV PD+
Sbjct: 496 MQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDD 540



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 118/300 (39%), Gaps = 48/300 (16%)

Query: 279 VLSYCSIINSLCKDVLVDKAKELFL-----------------DMKSRGIIPDVVVYSSLI 321
           + SYC++ + LC   ++ +A+ L                    +++RG     +V+S L+
Sbjct: 103 IHSYCTMTHFLCTHKMLSEAQSLLQFVVSRKGKNSASSVFTSVLEARGTHQSNLVFSVLM 162

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
           + Y   G   DA + F  +          S   L +   K+     A + Y E++  G  
Sbjct: 163 NAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEEILDCGYP 222

Query: 382 PD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
           PD                I EA  LF  +        +  FN L++G CKS  L   + L
Sbjct: 223 PDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRL 282

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI-------------RECL 475
            + +      P+V TY+V+I GLC EG ++ A  L  +M ++                C+
Sbjct: 283 KRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCV 342

Query: 476 K-----AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
                  +E+  +M ++ VKPD IT + L   L K  +  E   L+     R  +  K T
Sbjct: 343 TGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFT 402


>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
          Length = 683

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 113/421 (26%), Positives = 197/421 (46%), Gaps = 49/421 (11%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           +A    + M+ M     + +FN L+  L G         L +R+ T G +P  V+   L+
Sbjct: 230 EAAMLLDEMLLMGCAADVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLL 289

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
              C+     +A   LGR+       +VV L  +IRG   +GK   A+ L+    +  C 
Sbjct: 290 QGLCRTRQADEACAMLGRL----PEVNVVMLNTVIRGCLTEGKLARATELYEMMGSKGCP 345

Query: 190 PNVIPNVICYASIIDGLCKDG-FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
           P+V      Y+ ++ GLCK G F + VR+L  +M+ +G  P+   Y++L+  +C    W+
Sbjct: 346 PDVHT----YSILMHGLCKLGRFGSAVRMLD-EMEEKGCAPNIVTYSTLLHSFCRNGMWD 400

Query: 249 DAKGNTSAALELHEEF-VNGNGELGVI-----------------------CHPDVLSYCS 284
           DA+      L   + F +N  G  G+I                       C PD+ +Y +
Sbjct: 401 DARAMLDQMLA--KGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNT 458

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           +I  LC + L+++A+ +F ++   G++ + + Y++LI      GR  +  +L   +   G
Sbjct: 459 MIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHG 518

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN-------------SCILEAA 391
           C  D  SYN LI +  K   V+ +++L  EM++ G++P+N               + +A 
Sbjct: 519 CQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDAL 578

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
           EL + + N     D+  +N L++GLCK     +A  L +KLP     P++VTY ++I   
Sbjct: 579 ELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWH 638

Query: 452 C 452
           C
Sbjct: 639 C 639



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 118/501 (23%), Positives = 193/501 (38%), Gaps = 114/501 (22%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P F S N++++   +    +DA +   R+LR    P   T G   R LC  G+  +A  L
Sbjct: 140 PSFRSYNVVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCRLGRAGDALAL 199

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
                   C    +P+ + Y ++I  L   G V +  +L  +M   G   D   +N L+ 
Sbjct: 200 LRGMARHGC----VPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAADVNTFNDLVL 255

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD--- 296
             C         G    A  L +  +         C P V++Y  ++  LC+    D   
Sbjct: 256 GLC-------GLGRVREAARLVDRMMTQG------CMPSVVTYGFLLQGLCRTRQADEAC 302

Query: 297 ----------------------------KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                                       +A EL+  M S+G  PDV  YS L+ G C +G
Sbjct: 303 AMLGRLPEVNVVMLNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLG 362

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSY----------------------------- 359
           R   A ++   +E +GC P+  +Y+TL++S+                             
Sbjct: 363 RFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYN 422

Query: 360 ------SKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNT 400
                  K  K+++A  L  EM S G +PD             N  + EA  +FR L   
Sbjct: 423 GIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEE 482

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
               +   +N L+  L ++ R +    L  ++  +G + +V++Y  +I  LC EG ++++
Sbjct: 483 GVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRS 542

Query: 461 YDLLPDMEEK------------IRECLK------AIELLHKMAKRYVKPDEITVSILEEL 502
             LL +M  K            I E  K      A+EL  +M  + + PD +T + L   
Sbjct: 543 MALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLING 602

Query: 503 LNKDENCHECMNLLPSFLSRN 523
           L K    H  +NLL    + N
Sbjct: 603 LCKVGWTHAALNLLEKLPNEN 623



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 160/363 (44%), Gaps = 50/363 (13%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L E + + G  PD  + +ILM+  CK+     A   L  +  K  +P++VT   L+   C
Sbjct: 335 LYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFC 394

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
             G + +A  +  + +A         N   Y  II  LCKDG +++   L  +MK +G  
Sbjct: 395 RNGMWDDARAMLDQMLA----KGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCK 450

Query: 229 PDAFVYNSLIRVYCCAVNWEDAK--------------GNTSAALELHEEFVNGNGELGVI 274
           PD   YN++I   C     E+A+              G T   L +H    NG  + G+ 
Sbjct: 451 PDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTL-IHALLRNGRWQEGLR 509

Query: 275 ---------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
                    C  DV+SY  +I +LCK+  VD++  L  +M ++GI P+   Y+ LI+  C
Sbjct: 510 LASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELC 569

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
             G++ DA +L   + ++G  PD  +YNTLIN   K+     AL+L  ++ +  V P   
Sbjct: 570 KAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHP--- 626

Query: 386 CILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
                              D+  +N L+   CK   L  A  L  K    G  PN  T+ 
Sbjct: 627 -------------------DIVTYNILISWHCKVRLLDDAAMLLDKAISGGIVPNERTWG 667

Query: 446 VMI 448
           +M+
Sbjct: 668 MMV 670



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 131/293 (44%), Gaps = 17/293 (5%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           +DA    + M+    +     +N ++ AL           L + + + G  PD  + N +
Sbjct: 400 DDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTM 459

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           +   C    + +A      ++ +    + +T   LI  L   G++ E   L ++ +   C
Sbjct: 460 IYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGC 519

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
           + +VI     Y  +I  LCK+G V++   L  +M  +GI P+ F YN LI   C A    
Sbjct: 520 QLDVIS----YNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKA---- 571

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
              G    ALEL +E +N          PD+++Y ++IN LCK      A  L   + + 
Sbjct: 572 ---GKVRDALELSKEMLNQG------LTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNE 622

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
            + PD+V Y+ LI  +C +  +DDA  L     S G +P+  ++  ++ ++ +
Sbjct: 623 NVHPDIVTYNILISWHCKVRLLDDAAMLLDKAISGGIVPNERTWGMMVQNFVR 675



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 2/114 (1%)

Query: 57  LSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           ++E  K+G+V   DAL     M++   TP + ++N+L+  L    +    + L E+L   
Sbjct: 565 INELCKAGKVR--DALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNE 622

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
            + PD V+ NIL++  CK+  + DA + L + +     P+  T G +++    Q
Sbjct: 623 NVHPDIVTYNILISWHCKVRLLDDAAMLLDKAISGGIVPNERTWGMMVQNFVRQ 676


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 114/417 (27%), Positives = 189/417 (45%), Gaps = 33/417 (7%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           +D   FF  MI     P + ++N ++  +  +        L E +   GL+PD V+ N +
Sbjct: 244 DDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSM 303

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           ++ F K+  + D       +      PDV+T   LI   C  GK       + +      
Sbjct: 304 IDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGL 363

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
           +PNV+     Y++++D  CK+G + +    ++DM+  G+ P+ + Y SLI   C      
Sbjct: 364 KPNVVS----YSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANC------ 413

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
              GN S A  L      GN  L V    +V++Y ++I+ LC    + +A+ELF  M + 
Sbjct: 414 -KIGNLSDAFRL------GNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTA 466

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G+IP++  Y++LI G+     +D A +L   ++  G  PD   Y T I     +EK+E A
Sbjct: 467 GVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAA 526

Query: 369 LSLYGEMISMGVRPDNSCIL--------------EAAELFRTLHNTKFELDLTVFNCLVD 414
             +  EM   G++  NS I               E   L   +     E+ +  F  L+D
Sbjct: 527 KVVMNEMKECGIKA-NSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLID 585

Query: 415 GLCKSWRLRSAWELFKKLPR-YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           GLCK+  +  A + F ++   +G + N   +T MI GLC +  +E A  L   M +K
Sbjct: 586 GLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQK 642



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 152/340 (44%), Gaps = 44/340 (12%)

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
           V +  R   +P    + ++   L   G + +    F  MK   ++P     N L+  +  
Sbjct: 180 VLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFA- 238

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                   G T       ++ +      G    P V +Y  +I+ +CK+  V+ A+ LF 
Sbjct: 239 ------KLGKTDDVKRFFKDMI------GAGARPTVFTYNIMIDCMCKEGDVEAARGLFE 286

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
           +MK RG++PD V Y+S+IDG+  +GR+DD    F  ++   C PD  +YN LIN + K  
Sbjct: 287 EMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFG 346

Query: 364 KVEEALSLYGEMISMGVRP---------DNSC----ILEAAELFRTLHNTKFELDLTVFN 410
           K+   L  Y EM   G++P         D  C    + +A + +  +       +   + 
Sbjct: 347 KLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYT 406

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE- 469
            L+D  CK   L  A+ L  ++ + G E NVVTYT +I GLC    +++A +L   M+  
Sbjct: 407 SLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTA 466

Query: 470 -----------------KIRECLKAIELLHKMAKRYVKPD 492
                            K +   +A+ELL+++  R +KPD
Sbjct: 467 GVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPD 506



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 103/394 (26%), Positives = 161/394 (40%), Gaps = 75/394 (19%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
            L F+  M      P + S+++L+ A   +      I     +  +GL+P+  +   L++
Sbjct: 351 GLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLID 410

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
             CK+  +SDAF     +L+     +VVT   LI GLC   +  EA  LF K        
Sbjct: 411 ANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDT----A 466

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
            VIPN+  Y ++I G  K   +++   L  ++KGRGI PD  +Y + I   C     E A
Sbjct: 467 GVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAA 526

Query: 251 K----------------------------GNTSAALELHEEFVNGNGELGVI-------- 274
           K                            GN +  L L +E    + E+ V+        
Sbjct: 527 KVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDG 586

Query: 275 -CHPDVLS---------------------YCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
            C   ++S                     + ++I+ LCKD  V+ A  LF  M  +G++P
Sbjct: 587 LCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVP 646

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
           D   Y+SL+DG    G + +A  L   +   G   D  +Y +L+   S   ++++A S  
Sbjct: 647 DRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFL 706

Query: 373 GEMISMGVRPDN-------------SCILEAAEL 393
            EMI  G+ PD               CI EA EL
Sbjct: 707 EEMIGEGIHPDEVLCISVLKKHYELGCIDEAVEL 740


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 122/473 (25%), Positives = 217/473 (45%), Gaps = 49/473 (10%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLL-GALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +DAL  F+ M+ M   P   ++N+++ G + G      F    + L+  G  P+ V+ N+
Sbjct: 211 SDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHD-GPKPNIVTYNV 269

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++  C+   + +  V +  +      PD  T   L  GL   G+      LF + +   
Sbjct: 270 LLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESL--- 326

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            +  V+      + +++GLCKDG V K   +   +   G+ P   +YN+LI  YC     
Sbjct: 327 -KKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYC---QV 382

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
            D +G    A  + E+  + +        PD ++Y ++IN LCK  +V KA++L ++M+ 
Sbjct: 383 RDLRG----AFCIFEQMKSRH------IRPDHITYNALINGLCKLEMVTKAEDLVMEMEK 432

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            G+ P V  +++LID Y   G+++    +   ++ +G   D  S+ +++ ++ K  K+ E
Sbjct: 433 SGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPE 492

Query: 368 ALSLYGEMISMGVRPD----NSCI---LEAAE------LFRTLHNTKFELDLTVFNCLVD 414
           A+++  +MI   V P+    NS I   +E+ +      L   + N+     +  +N L+ 
Sbjct: 493 AVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLK 552

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC 474
           GLC+S ++  A EL   L   G  P+VV+Y  +I   C +G  +KA              
Sbjct: 553 GLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKA-------------- 598

Query: 475 LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEES 527
              +ELL +M K  ++P   T   L   L      H+   L    L +N E S
Sbjct: 599 ---LELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPS 648



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 144/312 (46%), Gaps = 25/312 (8%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           ++H    P    +N+L+      +      C+ E++ +  + PD ++ N L+N  CK+  
Sbjct: 360 LVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEM 419

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK----FTEASGLFTKFVAFDCRPNVI 193
           V+ A   +  + +    P V T   LI      G+    FT  S +  K +  D      
Sbjct: 420 VTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSD------ 473

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
             VI + S++   CK+G + +   +  DM  + + P+A VYNS+I  Y          G+
Sbjct: 474 --VISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYI-------ESGD 524

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
           T  A  L E+  N            +++Y  ++  LC+   +D+A+EL   ++++G+ PD
Sbjct: 525 TEQAFLLVEKMKNSG------VSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPD 578

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           VV Y+++I   C  G  D A +L   +   G  P   +Y+TL+++ +   +V +   LY 
Sbjct: 579 VVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQ 638

Query: 374 EMISMGVRPDNS 385
           +M+   V P +S
Sbjct: 639 QMLHKNVEPSSS 650



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 136/319 (42%), Gaps = 17/319 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L  A C F  M      P   ++N+L+  L   +       L   +   G+ P   + N
Sbjct: 384 DLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFN 443

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ +     +   F  L  + +K    DV++ G +++  C  GK  EA  +    +  
Sbjct: 444 TLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYK 503

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           D    V PN   Y SIID   + G   +  +L   MK  G+      YN L++  C +  
Sbjct: 504 D----VAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQ 559

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            ++A           EE +      G+   PDV+SY +II++ C     DKA EL  +M 
Sbjct: 560 IDEA-----------EELIYTLRNQGL--RPDVVSYNTIISACCNKGDTDKALELLQEMN 606

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
             GI P +  Y +L+      GR+ D   L+  +  +   P +S Y  ++++Y + E   
Sbjct: 607 KYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDS 666

Query: 367 EALSLYGEMISMGVRPDNS 385
           +  SL  EM   G+  D++
Sbjct: 667 KVASLKKEMSEKGIAFDDT 685



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 124/303 (40%), Gaps = 59/303 (19%)

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
           VR  F  +   G  PD F +N +++  C A       G+   AL +        G     
Sbjct: 141 VRAAFGLLVAAGARPDTFAWNKVVQA-CVAA------GDLDVALAMVRRMGRSEGA---- 189

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY---------- 324
             PD  SY  +I  L +      A ++F +M   G++P+ + Y+++IDG+          
Sbjct: 190 PPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGF 249

Query: 325 -------------------------CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
                                    C  GR+D+ R L   + S    PD  +Y+ L +  
Sbjct: 250 RLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGL 309

Query: 360 SKIEKVEEALSLYGEMISMGVRP-------------DNSCILEAAELFRTLHNTKFELDL 406
           ++  +    LSL+ E +  GV                +  + +A ++   L +T      
Sbjct: 310 TRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTT 369

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
            ++N L++G C+   LR A+ +F+++      P+ +TY  +I GLC    + KA DL+ +
Sbjct: 370 VIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVME 429

Query: 467 MEE 469
           ME+
Sbjct: 430 MEK 432


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 123/473 (26%), Positives = 216/473 (45%), Gaps = 49/473 (10%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLL-GALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +DAL  F+ M+ M   P   ++N+++ G + G      F    + L+  G  P+ V+ N+
Sbjct: 33  SDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHD-GPKPNIVTYNV 91

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++  C+   + +  V +  +      PD  T   L  GL   G+      LF    A  
Sbjct: 92  LLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLF----AES 147

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            +  V+      + +++GLCKDG V K   +   +   G+ P   +YN+LI  YC     
Sbjct: 148 LKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYC---QV 204

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
            D +G    A  + E+  + +        PD ++Y ++IN LCK  +V KA++L ++M+ 
Sbjct: 205 RDLRG----AFCIFEQMKSRH------IRPDHITYNALINGLCKLEMVTKAEDLVMEMEK 254

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            G+ P V  +++LID Y   G+++    +   ++ +G   D  S+ +++ ++ K  K+ E
Sbjct: 255 SGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPE 314

Query: 368 ALSLYGEMISMGVRPD----NSCI---LEAAE------LFRTLHNTKFELDLTVFNCLVD 414
           A+++  +MI   V P+    NS I   +E+ +      L   + N+     +  +N L+ 
Sbjct: 315 AVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLK 374

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC 474
           GLC+S ++  A EL   L   G  P+VV+Y  +I   C +G  +KA              
Sbjct: 375 GLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKA-------------- 420

Query: 475 LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEES 527
              +ELL +M K  ++P   T   L   L      H+   L    L +N E S
Sbjct: 421 ---LELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPS 470



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 144/312 (46%), Gaps = 25/312 (8%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           ++H    P    +N+L+      +      C+ E++ +  + PD ++ N L+N  CK+  
Sbjct: 182 LVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEM 241

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK----FTEASGLFTKFVAFDCRPNVI 193
           V+ A   +  + +    P V T   LI      G+    FT  S +  K +  D      
Sbjct: 242 VTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSD------ 295

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
             VI + S++   CK+G + +   +  DM  + + P+A VYNS+I  Y          G+
Sbjct: 296 --VISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYI-------ESGD 346

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
           T  A  L E+  N            +++Y  ++  LC+   +D+A+EL   ++++G+ PD
Sbjct: 347 TEQAFLLVEKMKNSG------VSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPD 400

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           VV Y+++I   C  G  D A +L   +   G  P   +Y+TL+++ +   +V +   LY 
Sbjct: 401 VVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQ 460

Query: 374 EMISMGVRPDNS 385
           +M+   V P +S
Sbjct: 461 QMLHKNVEPSSS 472



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 136/319 (42%), Gaps = 17/319 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L  A C F  M      P   ++N+L+  L   +       L   +   G+ P   + N
Sbjct: 206 DLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFN 265

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ +     +   F  L  + +K    DV++ G +++  C  GK  EA  +    +  
Sbjct: 266 TLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYK 325

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           D    V PN   Y SIID   + G   +  +L   MK  G+      YN L++  C +  
Sbjct: 326 D----VAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQ 381

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            ++A           EE +      G+   PDV+SY +II++ C     DKA EL  +M 
Sbjct: 382 IDEA-----------EELIYTLRNQGL--RPDVVSYNTIISACCNKGDTDKALELLQEMN 428

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
             GI P +  Y +L+      GR+ D   L+  +  +   P +S Y  ++++Y + E   
Sbjct: 429 KYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDS 488

Query: 367 EALSLYGEMISMGVRPDNS 385
           +  SL  EM   G+  D++
Sbjct: 489 KVASLKKEMSEKGIAFDDT 507



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 103/241 (42%), Gaps = 48/241 (19%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY------------ 324
           PD  SY  +I  L +      A ++F +M   G++P+ + Y+++IDG+            
Sbjct: 14  PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRL 73

Query: 325 -----------------------CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
                                  C  GR+D+ R L   + S    PD  +Y+ L +  ++
Sbjct: 74  RDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTR 133

Query: 362 IEKVEEALSLYGEMISMGVRP-------------DNSCILEAAELFRTLHNTKFELDLTV 408
             +    LSL+ E +  GV                +  + +A ++   L +T       +
Sbjct: 134 TGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVI 193

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +N L++G C+   LR A+ +F+++      P+ +TY  +I GLC    + KA DL+ +ME
Sbjct: 194 YNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEME 253

Query: 469 E 469
           +
Sbjct: 254 K 254


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/379 (29%), Positives = 178/379 (46%), Gaps = 53/379 (13%)

Query: 107 ICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166
           I L E + + G   + V    LM   C    V +A     R + K  +PDV+T   L+  
Sbjct: 29  IQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEHF-RAMAKDCAPDVMTYTALVHA 87

Query: 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
           LC  GKF EA G+  + +A  C P+ +     ++++IDGLCK G   +   +  D+  RG
Sbjct: 88  LCKAGKFDEAQGMLREMIARGCAPDTVT----FSTLIDGLCKFGSEEQAFRVLEDVIQRG 143

Query: 227 IYPDAFVYNSLIRVYCCAVNWED----------AKGNTSAALELHEEFVNGNGE------ 270
           +      + ++I+  C   N  +          AKG T   L +    +NG  +      
Sbjct: 144 MGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVL-MFNLVINGFCKAKDLDS 202

Query: 271 ----LGVI----CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
               L V+    C P+V ++  +I  LCK   V +A++L   M + G  P+VV YS++I+
Sbjct: 203 AYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVIN 262

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
           G C  G++DDA +LF  +E   C P+  ++N LI+   K +++EEA  LY  M   G  P
Sbjct: 263 GLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAP 322

Query: 383 DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG-PEPNV 441
                                 D+  +N L+DGLCKS+++  A++LF+ +P  G    N 
Sbjct: 323 ----------------------DIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANA 360

Query: 442 VTYTVMICGLCIEGGIEKA 460
           VTY+ +  G    G +  A
Sbjct: 361 VTYSTLFHGYAALGRMADA 379



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 124/474 (26%), Positives = 208/474 (43%), Gaps = 61/474 (12%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           TP +  FN ++      K   +   L E +   G +P+  +  IL+   CK   V +A  
Sbjct: 181 TPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQ 240

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
            L +++    SP+VVT   +I GLC QG+  +A  LF      +C PNV+ + I    +I
Sbjct: 241 LLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNI----LI 296

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA---------KGNT 254
           DGLCK   + + R L+  M+  G  PD   YNSLI   C +   ++A          G +
Sbjct: 297 DGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVS 356

Query: 255 SAALELHEEFVNGNGELGVIC--------------HPDVLSYCSIINSLCKDVLVDKAKE 300
           +A    +    +G   LG +                PD+ +Y S+I   CK     +  E
Sbjct: 357 AANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVE 416

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           L  +M S+G  P V   S+++ G       + A +LF S+ + GC  D   YN ++   +
Sbjct: 417 LVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMA 476

Query: 361 KIEKVEEALSLYGEMISMGVR---PDNSCI-------------LEAAELFRTLHNTKFEL 404
           +  K  +AL++  ++I    R   P +S +              +A +L   +    F  
Sbjct: 477 RASKHNKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAA 536

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            ++ +N L+ GL +  R   A ++F+ +   GP P + T  V+I  LC    ++ AY+L+
Sbjct: 537 AVSSYNGLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELV 596

Query: 465 ---------PDMEE---------KIRECLKAIELLHKMAKRYVKPDEITVSILE 500
                    PD+E          K      A +LL +M +  ++P++ T  +LE
Sbjct: 597 QRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPNDTTHDLLE 650



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 124/470 (26%), Positives = 204/470 (43%), Gaps = 40/470 (8%)

Query: 15  VKPSSSLRNSKKPISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCF 74
           ++  SS  +    I L  E + +    N+V      T L+K L +  +  E     AL  
Sbjct: 16  IRGFSSAGDLDIAIQLLEEMKSNGFEGNAVV----HTTLMKGLCDAGRVVE-----ALEH 66

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           F  M      P + ++ +L+ AL     +     +   +   G  PD V+ + L++  CK
Sbjct: 67  FRAMAK-DCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCK 125

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
                 AF  L  ++++           +I+ LC +    E   L +K +         P
Sbjct: 126 FGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVE---LASKVLGVVIAKGFTP 182

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
            V+ +  +I+G CK   ++    L   M  +G  P+ F +  LI   C A    +A+   
Sbjct: 183 TVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQ--- 239

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
               +L E+ V G       C P+V++Y ++IN LCK   VD A ELF  M+ R   P+V
Sbjct: 240 ----QLLEKMVTGG------CSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNV 289

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           V ++ LIDG C   RI++AR+L+  +   GC PD  +YN+LI+   K  +V+EA  L+  
Sbjct: 290 VTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQT 349

Query: 375 MISMGVRPDNSC--------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           +   GV   N+               + +A  +F  L +  F  DL  +  L+   CK+ 
Sbjct: 350 IPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTS 409

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           R     EL +++   G  P V T + ++ GL      E+A  L   M  +
Sbjct: 410 RAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAAR 459



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/359 (27%), Positives = 160/359 (44%), Gaps = 46/359 (12%)

Query: 193 IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252
           +PN   Y  +I G    G ++    L  +MK  G   +A V+ +L++  C A       G
Sbjct: 6   MPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDA-------G 58

Query: 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
               ALE               C PDV++Y +++++LCK    D+A+ +  +M +RG  P
Sbjct: 59  RVVEALEHFRAMAKD-------CAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAP 111

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY-SKIEKVEEALSL 371
           D V +S+LIDG C  G  + A ++   +   G     +++ T+I    +K   VE A  +
Sbjct: 112 DTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKV 171

Query: 372 YGEMISMGVRP---------DNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
            G +I+ G  P         +  C    +  A +L   +       ++  F  L+ GLCK
Sbjct: 172 LGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCK 231

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE--------- 469
           + R+  A +L +K+   G  PNVVTY+ +I GLC +G ++ AY+L   ME          
Sbjct: 232 ANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVT 291

Query: 470 ---------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519
                    K +   +A +L H+M +    PD IT + L + L K     E   L  + 
Sbjct: 292 HNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTI 350



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 115/470 (24%), Positives = 186/470 (39%), Gaps = 99/470 (21%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L+ A      MI     P + +F  L+  L           L E++ T G  P+ V+ +
Sbjct: 199 DLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYS 258

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            ++N  CK   V DA+     + R+   P+VVT   LI GLC   +  EA  L+ +    
Sbjct: 259 TVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRET 318

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK----------------------G 224
            C P++I     Y S+IDGLCK   V++   LF  +                       G
Sbjct: 319 GCAPDIIT----YNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALG 374

Query: 225 R--------------GIYPDAFVYNSLIRVYCCA---------------------VNWED 249
           R              G  PD   Y SLI  YC                       VN   
Sbjct: 375 RMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLS 434

Query: 250 A------KGN-TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK--- 299
           A      +GN T  A++L +            C  D L Y  ++  + +    +KA    
Sbjct: 435 AVLGGLFEGNHTERAIQLFDSMAARG------CTDDALIYNLVVEGMARASKHNKALAVL 488

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           E  +D + R   P      +L++  C +GR DDA++L   +   G     SSYN L++  
Sbjct: 489 EQVIDKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGL 548

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
           S++++ +EA  ++  M+S G  P                      +++  N ++  LC +
Sbjct: 549 SRLQRWDEATQVFEAMVSAGPAP----------------------EISTVNVVISWLCSA 586

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
            ++  A+EL +++ + G  P++ T   +I G C  G  + A  LL +M E
Sbjct: 587 AKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTE 636



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 129/309 (41%), Gaps = 68/309 (22%)

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
           IC P+  +Y  +I        +D A +L  +MKS G   + VV+++L+ G C  GR+ +A
Sbjct: 4   ICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEA 63

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---SCILEA 390
            + F ++  + C PD  +Y  L+++  K  K +EA  +  EMI+ G  PD    S +++ 
Sbjct: 64  LEHFRAMAKD-CAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDG 122

Query: 391 -------AELFRTLHNT---------------------------------------KFEL 404
                   + FR L +                                         F  
Sbjct: 123 LCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTP 182

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            + +FN +++G CK+  L SA++L + +   G  PNV T+T++I GLC    + +A  LL
Sbjct: 183 TVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLL 242

Query: 465 PDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
             M                    K  +   A EL   M +R   P+ +T +IL + L K 
Sbjct: 243 EKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKA 302

Query: 507 ENCHECMNL 515
           +   E   L
Sbjct: 303 KRIEEARQL 311


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/405 (27%), Positives = 183/405 (45%), Gaps = 43/405 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L +A      M      P + ++N L+  L  +        L + +  + LLPD VS N 
Sbjct: 294 LKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNT 353

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N   +   +S+AF  L  +  K   P+ VT   +++  C +GK  +AS   TK     
Sbjct: 354 LINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKME--- 410

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
                 P+ + Y ++I+G CK G + +      +M  + +  D+   N+++R  C     
Sbjct: 411 -ESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKL 469

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           E+A    S+A +    F+            D +SY ++I    KD  VD+A +L+ +MK 
Sbjct: 470 EEAYKLLSSARK-RGYFI------------DEVSYGTLIVGYFKDGNVDRALKLWDEMKE 516

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           + IIP  V Y+ +I G C  G+ + A      +   G +PD ++YNT+++ Y +   VE+
Sbjct: 517 KEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEK 576

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNC--LVDGLCKSWRLRSA 425
           A   + +M+    +PD                        VF C  L+ GLC    L  A
Sbjct: 577 AFQFHNKMVENSFKPD------------------------VFTCNILLRGLCMEGVLEKA 612

Query: 426 WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            +LF      G   + VTY  +I  LC EG ++ A++LL +MEEK
Sbjct: 613 LKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEK 657



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 130/510 (25%), Positives = 217/510 (42%), Gaps = 86/510 (16%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKM---IGVSD 140
           +P     ++ +GA        +   + +++  + L P+ ++ N L+N   +      VS 
Sbjct: 132 SPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSF 191

Query: 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200
           +  A    ++    P+V T   +I G C++ KF +A         ++C P+ +     Y 
Sbjct: 192 SREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNV----TYN 247

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL 260
           +I+D LCK G +   R L +DMK RG+ P+   YN L+  YC  + W     N       
Sbjct: 248 TILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYC-KMGWLKEAANVI----- 301

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
             E +  N  L     PDV +Y  +IN LC +  +++A +L  +M++  ++PDVV Y++L
Sbjct: 302 --ELMTQNNLL-----PDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTL 354

Query: 321 IDG-----------------------------------YCLMGRIDDARKLFVSIESEGC 345
           I+G                                   YC  G++DDA      +E  G 
Sbjct: 355 INGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGF 414

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---SCIL----------EAAE 392
            PD  +YNTLIN Y K   + EA     EM    ++ D+   + IL          EA +
Sbjct: 415 SPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYK 474

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
           L  +     + +D   +  L+ G  K   +  A +L+ ++      P+ VTY  +I GLC
Sbjct: 475 LLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLC 534

Query: 453 IEGGIEKAYD---------LLPD-------MEEKIRE--CLKAIELLHKMAKRYVKPDEI 494
             G  E+A           LLPD       +    RE    KA +  +KM +   KPD  
Sbjct: 535 QCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVF 594

Query: 495 TVSILEELLNKDENCHECMNLLPSFLSRNQ 524
           T +IL   L  +    + + L  +++S+ +
Sbjct: 595 TCNILLRGLCMEGVLEKALKLFNTWVSKGK 624



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 181/408 (44%), Gaps = 64/408 (15%)

Query: 141 AFVALGR-------ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
            F+A  R       ILR + SP    L   I      G+   A  +F K      RPN++
Sbjct: 113 GFIATDRRHDLHLSILR-LTSPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLL 171

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
                  S++        V+  R  F D    GI P+   +N +I  YC    ++DA   
Sbjct: 172 TCNTLLNSLVRYPSSHS-VSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAV-- 228

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
                    EF+N  G+    C PD ++Y +I+++LCK   +  A++L +DMKSRG++P+
Sbjct: 229 ---------EFLNVMGKYN--CSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPN 277

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
              Y+ L+ GYC MG + +A  +   +     +PD  +YN LIN      ++EEA  L  
Sbjct: 278 RNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRD 337

Query: 374 EMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW-RLRSAWELFKKL 432
           EM ++ + P                      D+  +N L++G C  W ++  A++L +++
Sbjct: 338 EMENLKLLP----------------------DVVSYNTLING-CLEWSKISEAFKLLEEM 374

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIREC 474
              G +PN VT+ +M+   C EG ++ A + +  MEE                  K    
Sbjct: 375 SEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNM 434

Query: 475 LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
            +A   + +M ++ +K D +T++ +   L +++   E   LL S   R
Sbjct: 435 GEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKR 482



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 160/367 (43%), Gaps = 45/367 (12%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  PD V+ N L+N +CK   + +AF  +  + RK    D VTL  ++R LC + K  EA
Sbjct: 413 GFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEA 472

Query: 177 ---------SGLFTKFVAFDC----------------------RPNVIPNVICYASIIDG 205
                     G F   V++                           +IP+ + Y  II G
Sbjct: 473 YKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGG 532

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
           LC+ G   +      ++   G+ PD   YN+++  YC        +G+   A + H + V
Sbjct: 533 LCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYC-------REGDVEKAFQFHNKMV 585

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
             + +      PDV +   ++  LC + +++KA +LF    S+G   D V Y++LI   C
Sbjct: 586 ENSFK------PDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLC 639

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
             GR+DDA  L   +E +   PD  +YN +I + +   ++ EA     +M+  G  PD  
Sbjct: 640 KEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGNLPDQV 699

Query: 386 CILEAAELFRTLHNTKFELDLTV-FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
             L+  E   T   ++     +V ++  +  LC   + + A  +F +  + G   +  TY
Sbjct: 700 LQLDKNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQKGITVDKSTY 759

Query: 445 TVMICGL 451
             ++ GL
Sbjct: 760 INLMDGL 766



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 133/303 (43%), Gaps = 31/303 (10%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G V+   AL  ++ M   +  P   ++N ++G L         I     L   GLLPD
Sbjct: 500 KDGNVD--RALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPD 557

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             + N +++ +C+   V  AF    +++   F PDV T   L+RGLCM+G   +A  LF 
Sbjct: 558 ETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFN 617

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
            +V+   +   I + + Y ++I  LCK+G ++    L  +M+ + + PD + YN++I   
Sbjct: 618 TWVS---KGKAI-DTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITAL 673

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
                        S  +   EEF++   E G +  PD +            + +DK + +
Sbjct: 674 T-----------DSGRIREAEEFMSKMLEKGNL--PDQV------------LQLDKNETV 708

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
                S       V YS  I   C  G+  DA ++F   + +G   D S+Y  L++   K
Sbjct: 709 VTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQKGITVDKSTYINLMDGLIK 768

Query: 362 IEK 364
             K
Sbjct: 769 RRK 771


>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
 gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
          Length = 676

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 113/438 (25%), Positives = 193/438 (44%), Gaps = 46/438 (10%)

Query: 99  GKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVV 158
           G +   +F    +  + +G+ PD  S   L+   C+     +A   L  + R+ FS D  
Sbjct: 158 GLRQRHHFAHARQAFDGMGVRPDARSFRALVLGCCQEGRFEEADALLAAMWREGFSLDSA 217

Query: 159 TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVL 218
           T   ++R  C QG+F +  GLF + V     P   PNV+ Y + +DGLCK G+V +   +
Sbjct: 218 TCTVVVRAFCRQGRFRDVPGLFGRMVEMG-NP---PNVVNYTAWVDGLCKRGYVKQAFHV 273

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD 278
             +M G+G+ P+ + + SLI    C + W      T  A  L  + V  +        P+
Sbjct: 274 LEEMVGKGLKPNVYTHTSLIDGL-CKIGW------TERAFRLFLKLVKSSSY-----KPN 321

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
           V +Y  +I   CK+  + +A+ L   M  +G+ P+   Y++LIDG+C  G  D A +L  
Sbjct: 322 VHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMN 381

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NS 385
            ++ EG +P+  +YN +I  + K  K+++A  +     S G+ PD               
Sbjct: 382 KMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYTMLITEHCKQG 441

Query: 386 CILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
            I  A +LF  +       D+  +  ++   C+  ++  + +LF K    G  P   TYT
Sbjct: 442 HITYALDLFNQMAENSCHPDIDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYT 501

Query: 446 VMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505
            MI G C                 ++ +   A+++  +M +    PD IT   L   L K
Sbjct: 502 SMIAGYC-----------------RVGKSTSALKVFERMVQHGCLPDPITYGALISGLCK 544

Query: 506 DENCHECMNLLPSFLSRN 523
           +    E   L  + L ++
Sbjct: 545 ESRLEEARALFETMLDKH 562



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 175/396 (44%), Gaps = 47/396 (11%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
              D    F  M+ M   P + ++ + +  L  + Y      + E +   GL P+  +  
Sbjct: 231 RFRDVPGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHT 290

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKV-FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
            L++  CK+     AF    ++++   + P+V T   +I G C +GK   A  L  + V 
Sbjct: 291 SLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMV- 349

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
                 + PN   Y ++IDG C+ G  ++   L   MK  G  P+ + YN++I  +C   
Sbjct: 350 ---EQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKG 406

Query: 246 NWEDA----------------------------KGNTSAALELHEEFVNGNGELGVICHP 277
             + A                            +G+ + AL+L  +    +      CHP
Sbjct: 407 KIQQAYKVLRMATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMAENS------CHP 460

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           D+ +Y +II   C+   ++++++LF    S G++P    Y+S+I GYC +G+   A K+F
Sbjct: 461 DIDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRVGKSTSALKVF 520

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP-DNSCILEAAELFRT 396
             +   GC+PD  +Y  LI+   K  ++EEA +L+  M+   + P D +C+  A E  R 
Sbjct: 521 ERMVQHGCLPDPITYGALISGLCKESRLEEARALFETMLDKHMVPCDVTCVTLAYEYCR- 579

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
                     T+    +DGL K  +  +A  L +KL
Sbjct: 580 ------RDKTTIAVSFLDGLDKRQQAHAADALVRKL 609



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 155/360 (43%), Gaps = 27/360 (7%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + ++  ++G    +        L  R+   GL P+  +   L++  C+      AF  
Sbjct: 320 PNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFEL 379

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           + ++  + F P++ T   +I G C +GK  +A     K +       + P+ + Y  +I 
Sbjct: 380 MNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAY----KVLRMATSQGLCPDKVTYTMLIT 435

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
             CK G +     LF  M     +PD   Y ++I +YC              + +L ++ 
Sbjct: 436 EHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQQR-------QMEQSQQLFDKC 488

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           ++    +G++  P   +Y S+I   C+      A ++F  M   G +PD + Y +LI G 
Sbjct: 489 LS----IGLV--PTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPDPITYGALISGL 542

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS-LYGEMISMGVRPD 383
           C   R+++AR LF ++  +  +P   +  TL   Y + +K   A+S L G          
Sbjct: 543 CKESRLEEARALFETMLDKHMVPCDVTCVTLAYEYCRRDKTTIAVSFLDGLDKRQQAHAA 602

Query: 384 NSCI--------LEAAELF-RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
           ++ +        L+AA LF + + +  + +D   +   ++   +S R   A E+ +K+ +
Sbjct: 603 DALVRKLSAVDNLDAASLFLKNVLDKHYAVDHATYTSFINSCYESNRYALASEISEKISK 662



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 2/132 (1%)

Query: 49  EKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFIC 108
           +K      ++E+ K G +    AL  FN M      P + ++ +++     ++       
Sbjct: 426 DKVTYTMLITEHCKQGHITY--ALDLFNQMAENSCHPDIDTYTTIIAMYCQQRQMEQSQQ 483

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L ++  +IGL+P   +   ++  +C++   + A     R+++    PD +T G LI GLC
Sbjct: 484 LFDKCLSIGLVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPDPITYGALISGLC 543

Query: 169 MQGKFTEASGLF 180
            + +  EA  LF
Sbjct: 544 KESRLEEARALF 555


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 124/446 (27%), Positives = 208/446 (46%), Gaps = 40/446 (8%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G++E+  +L  F  M     TP + ++NSL+            IC+ E++      PD
Sbjct: 68  KEGDLEMARSL--FTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPD 125

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            ++ N L+NCFCK   +  AF  L  +      P+VVT    I   C +G   EA   F 
Sbjct: 126 VITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFV 185

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
                  R  + PN   Y S+ID  CK G + +   L  ++   GI  +   Y +L+   
Sbjct: 186 DMR----RVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGL 241

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C        +G    A E+    +N     GV   P+  +Y ++++   K   ++ AK++
Sbjct: 242 C-------EEGRMKEAEEVFRAMLNA----GVA--PNQETYTALVHGFIKAKEMEYAKDI 288

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
             +MK + I PD+++Y +++ G C   R+++A+ L   I+  G   +   Y TL+++Y K
Sbjct: 289 LKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFK 348

Query: 362 IEKVEEALSLYGEMISM--GVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
             +  EAL+L  EM+ +  G+   N+C   A +LF  + +     D   +  L+DG  K 
Sbjct: 349 SGQATEALTLLEEMLDLVDGL-CKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKH 407

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM-------EEKIR 472
             L+ A  L  ++   G E ++  YT +I GL   G ++KA +LL +M       +E + 
Sbjct: 408 GNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVY 467

Query: 473 ECL-----------KAIELLHKMAKR 487
            CL           +A+EL ++MAKR
Sbjct: 468 MCLIKKYYALGKVDEALELQNEMAKR 493



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 143/302 (47%), Gaps = 66/302 (21%)

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           +V  Y  +ID LCK+G +   R LF  MK  G  PD   YNSLI                
Sbjct: 55  SVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLI---------------- 98

Query: 255 SAALELHEEFVNGNGELGVI--------------CHPDVLSYCSIINSLCKDVLVDKAKE 300
                      +G+G+LG++              C PDV++Y ++IN  CK   + KA E
Sbjct: 99  -----------DGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFE 147

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
              +MK+ G+ P+VV YS+ ID +C  G + +A K FV +      P+  +Y +LI++  
Sbjct: 148 FLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANC 207

Query: 361 KIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           K   + EAL L  E++  G++                      L++  +  L+DGLC+  
Sbjct: 208 KAGNLAEALKLVEEILQAGIK----------------------LNVVTYTALLDGLCEEG 245

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIEL 480
           R++ A E+F+ +   G  PN  TYT ++ G      +E A D+L +M+EK   C+K   L
Sbjct: 246 RMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEK---CIKPDLL 302

Query: 481 LH 482
           L+
Sbjct: 303 LY 304



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/401 (26%), Positives = 176/401 (43%), Gaps = 46/401 (11%)

Query: 143 VALGRILRKVFSP--------DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
           V  G + RK F           V T   +I  LC +G    A  LFT+           P
Sbjct: 34  VGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMK----EAGFTP 89

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           +++ Y S+IDG  K G +++   +F  MK     PD   YN+LI  +C    +E      
Sbjct: 90  DIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFC---KFE----RM 142

Query: 255 SAALE-LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
             A E LHE   NG         P+V++Y + I++ CK+ ++ +A + F+DM+   + P+
Sbjct: 143 PKAFEFLHEMKANG-------LKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPN 195

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
              Y+SLID  C  G + +A KL   I   G   +  +Y  L++   +  +++EA  ++ 
Sbjct: 196 EFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFR 255

Query: 374 EMISMGVRPDNSCILE-------------AAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
            M++ GV P+                   A ++ + +     + DL ++  ++ GLC   
Sbjct: 256 AMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNES 315

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLK---- 476
           RL  A  L  ++   G   N V YT ++      G   +A  LL +M + +    K    
Sbjct: 316 RLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDGLCKNNCF 375

Query: 477 --AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
             A +L  +M  + + PD+I  + L +   K  N  E +NL
Sbjct: 376 EVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNL 416



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 151/375 (40%), Gaps = 94/375 (25%)

Query: 75  FNYMIHMQPTPFMP---SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131
           F ++  M+     P   ++++ + A   +      I     +  + L P+  +   L++ 
Sbjct: 146 FEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDA 205

Query: 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
            CK   +++A   +  IL+     +VVT   L+ GLC +G+  EA  +F   +     PN
Sbjct: 206 NCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPN 265

Query: 192 -------------------------------VIPNVICYASIIDGLCKDGFVNKVRVLFL 220
                                          + P+++ Y +I+ GLC +  + + ++L  
Sbjct: 266 QETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIG 325

Query: 221 DMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVL 280
           ++K  GI  +A +Y +L+  Y          G  + AL L EE ++              
Sbjct: 326 EIKESGINTNAVIYTTLMDAYF-------KSGQATEALTLLEEMLD-------------- 364

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG----------------- 323
               +++ LCK+   + AK+LF +M  +G++PD + Y++LIDG                 
Sbjct: 365 ----LVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRM 420

Query: 324 -----------YCLM-------GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
                      Y  +       G++  AR L   +  +G +PD   Y  LI  Y  + KV
Sbjct: 421 IEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKV 480

Query: 366 EEALSLYGEMISMGV 380
           +EAL L  EM   G+
Sbjct: 481 DEALELQNEMAKRGM 495



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 89/184 (48%), Gaps = 22/184 (11%)

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
           ++++ L K    D +++ F DM + GI   V  Y+ +ID  C  G ++ AR LF  ++  
Sbjct: 26  ALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEA 85

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFE 403
           G  PD  +YN+LI+ + K+  ++E + ++ +M      P                     
Sbjct: 86  GFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDP--------------------- 124

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D+  +N L++  CK  R+  A+E   ++   G +PNVVTY+  I   C EG +++A   
Sbjct: 125 -DVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKF 183

Query: 464 LPDM 467
             DM
Sbjct: 184 FVDM 187



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 109/259 (42%), Gaps = 40/259 (15%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ P+  +   L++ F K   +  A   L  +  K   PD++  G ++ GLC + +  EA
Sbjct: 261 GVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEA 320

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASI-----------------------IDGLCKDGFVN 213
             L  +         +  N + Y ++                       +DGLCK+    
Sbjct: 321 KLLIGEIK----ESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDGLCKNNCFE 376

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
             + LF +M  +G+ PD   Y +LI       +     GN   AL L +  +    EL  
Sbjct: 377 VAKKLFDEMLDKGMMPDKIAYTALI-------DGNMKHGNLQEALNLRDRMIEIGMEL-- 427

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
               D+ +Y ++I  L     V KA+ L  +M  +G++PD VVY  LI  Y  +G++D+A
Sbjct: 428 ----DLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEA 483

Query: 334 RKLFVSIESEGCIPDTSSY 352
            +L   +   G I   S +
Sbjct: 484 LELQNEMAKRGMITGLSDH 502



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 87/204 (42%), Gaps = 39/204 (19%)

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353
           ++++A E FL M+   + P     ++L+     +GR D +RK F  + + G      +YN
Sbjct: 1   MLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYN 60

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLV 413
            +I+   K   +E A SL+ +M   G  PD                      +  +N L+
Sbjct: 61  IMIDYLCKEGDLEMARSLFTQMKEAGFTPD----------------------IVTYNSLI 98

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
           DG  K   L     +F+++     +P+V+TY  +I   C        ++ +P        
Sbjct: 99  DGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFC-------KFERMP-------- 143

Query: 474 CLKAIELLHKMAKRYVKPDEITVS 497
             KA E LH+M    +KP+ +T S
Sbjct: 144 --KAFEFLHEMKANGLKPNVVTYS 165


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1113

 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 125/479 (26%), Positives = 209/479 (43%), Gaps = 84/479 (17%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           +AL  +  M+     P + +F++L+ A   ++       L E + ++GL P+  +  I +
Sbjct: 212 EALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTICI 271

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
               +   + +A   + R+      PDVVT   LI  LC  GK  +A  LF K  A   +
Sbjct: 272 RVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHK 331

Query: 190 PNVI-------------------------------PNVICYASIIDGLCKDGFVNKVRVL 218
           P+ +                               P+VI +  +++ LCK G +++   L
Sbjct: 332 PDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHL 391

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD 278
              M+ +G+ P+   YN+LI         +DA            +  N    LGV+  P 
Sbjct: 392 LDVMRKQGVLPNLHTYNTLISGLLRVNRLDDAL-----------DLFNNMETLGVV--PT 438

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
             +Y   I+   K    DKA E F  MK RGI P++V  ++ +     MGR+ +A+ +F 
Sbjct: 439 AYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFN 498

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398
            ++S G  PD+ +YN ++  YSK  +V+EA+ L  +M       +N C            
Sbjct: 499 RLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDM------SENQC------------ 540

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
               E D+ V N L++ L K+ R+  AW++F +L      P VVTY  +I GL  EG ++
Sbjct: 541 ----EPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQ 596

Query: 459 KAYDLLPDME-----------EKIRECL-------KAIELLHKMAKRYVKPDEITVSIL 499
           +A +L   M              I +CL        A+++L+KM      PD +T + +
Sbjct: 597 RAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTI 655



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 122/456 (26%), Positives = 197/456 (43%), Gaps = 68/456 (14%)

Query: 62   KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
            K+ EV+L  AL     M  M   P + +FN+++  L  +K   + I L  ++  + L PD
Sbjct: 626  KNDEVDL--ALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQMKKM-LTPD 682

Query: 122  FVSLNILMNCFCKMIGVSDAFVA--------------------LGRILRKVFSPDVVTLG 161
             V+L  L+    K   + DAF                      +G IL +  +   +  G
Sbjct: 683  CVTLCTLLPGVVKNGLMEDAFKIAEDFVHRLGVYVDRRFWEDLMGGILTQAGTEKTILFG 742

Query: 162  --------C--------LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDG 205
                    C        +I+ LC   +   A  +F +F        V P +  Y  +I+G
Sbjct: 743  DRLVCGRVCKDGSVLMPIIKVLCKHKQALVAQSVFIRFTK---ELGVKPTLESYNFLIEG 799

Query: 206  LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
                        LF +MK  G  PD F YN L+  +          G  +   EL+E+ +
Sbjct: 800  FLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAH-------GKSGKINELFELYEQMI 852

Query: 266  NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
              +      C P+ +++  II +L K   +DKA +LF D+ S    P    Y  L+DG  
Sbjct: 853  CSS------CKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLL 906

Query: 326  LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-- 383
              GR+++A++LF  +   GC P+ + YN LIN + K   V  A  L+  M+  G+RPD  
Sbjct: 907  KSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLK 966

Query: 384  -----NSCILEAAEL------FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
                   C+ EA  +      F  L  T   LD   +N ++DGL +S R+  A  L+ ++
Sbjct: 967  SYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEM 1026

Query: 433  PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
               G  P++ TY  +I  L + G +E+A  L  +++
Sbjct: 1027 QSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQ 1062



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 129/526 (24%), Positives = 226/526 (42%), Gaps = 71/526 (13%)

Query: 47   VEEKTKLLKYLSENS----------------KSGEVELNDALCFFNYMIHMQPTPFMPSF 90
            V+E  +LL  +SEN                 K+G V+  +A   F  +  M+  P + ++
Sbjct: 525  VDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVD--EAWKMFCRLKDMKLAPTVVTY 582

Query: 91   NSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILR 150
            N+L+  L  +      + L   +   G  P+ ++ N +++C CK   V  A   L ++  
Sbjct: 583  NTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTT 642

Query: 151  KVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDG 210
                PDV+T   +I GL ++ + ++A  LF +      +  + P+ +   +++ G+ K+G
Sbjct: 643  MNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQM-----KKMLTPDCVTLCTLLPGVVKNG 697

Query: 211  FVNKVRVLFLDMKGR-GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
             +     +  D   R G+Y D        R +     WED  G         +  + G+ 
Sbjct: 698  LMEDAFKIAEDFVHRLGVYVD--------RRF-----WEDLMGGILTQAGTEKTILFGDR 744

Query: 270  EL-GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM-KSRGIIPDVVVYSSLIDGYCLM 327
             + G +C  D      II  LCK      A+ +F+   K  G+ P +  Y+ LI+G+  +
Sbjct: 745  LVCGRVC-KDGSVLMPIIKVLCKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLGV 803

Query: 328  GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---- 383
               + A  LF  +++ GC PD  +YN L++++ K  K+ E   LY +MI    +P+    
Sbjct: 804  HNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITH 863

Query: 384  ---------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
                     ++ + +A +LF  L +  F      +  L+DGL KS RL  A ELF+++  
Sbjct: 864  NIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVD 923

Query: 435  YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM-EEKIRECLK----------------- 476
            YG  PN   Y ++I G    G +  A +L   M  E IR  LK                 
Sbjct: 924  YGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDD 983

Query: 477  AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
            A+    K+ +  +  D I  +++ + L +     E + L     SR
Sbjct: 984  ALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSR 1029



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 159/372 (42%), Gaps = 45/372 (12%)

Query: 96   ALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSP 155
            AL  +  ++ F         +G+ P   S N L+  F  +     A+     +     +P
Sbjct: 770  ALVAQSVFIRFT------KELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAP 823

Query: 156  DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV 215
            DV T   L+      GK  E   L+ + +   C+PN I + I    II  L K   ++K 
Sbjct: 824  DVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNI----IIANLVKSNSLDKA 879

Query: 216  RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
              LF D+      P    Y  L+     +   E+AK       EL EE V+        C
Sbjct: 880  LDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAK-------ELFEEMVDYG------C 926

Query: 276  HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
             P+   Y  +IN   K   V+ A ELF  M   GI PD+  Y+SL+   C  GR+DDA  
Sbjct: 927  RPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALH 986

Query: 336  LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395
             F  ++  G   D+ +YN +I+   +  ++EEAL+LY EM S G+ PD            
Sbjct: 987  YFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPD------------ 1034

Query: 396  TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
                      L  +N L+  L  +  +  A +L+++L   G EPNV TY  +I G  + G
Sbjct: 1035 ----------LFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSG 1084

Query: 456  GIEKAYDLLPDM 467
              + AY +   M
Sbjct: 1085 NSDSAYAVYKRM 1096



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 167/386 (43%), Gaps = 67/386 (17%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  PD ++  IL+N  CK   + +AF  L  + ++   P++ T   LI GL    +  +A
Sbjct: 364 GYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDA 423

Query: 177 SGLFTKFVAFDCRPN-------------------------------VIPNVICYASIIDG 205
             LF         P                                + PN++   + +  
Sbjct: 424 LDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYS 483

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
           L + G + + +V+F  +K  G+ PD+  YN +++ Y  A       G    A+EL  +  
Sbjct: 484 LAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKA-------GQVDEAIELLSDMS 536

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
                    C PD++   S+IN+L K   VD+A ++F  +K   + P VV Y++LI G  
Sbjct: 537 ENQ------CEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLG 590

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
             G++  A +LF S+   GC P+T ++NT+++   K ++V+ AL +  +M +M   P   
Sbjct: 591 KEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMP--- 647

Query: 386 CILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
                              D+  FN ++ GL    R+  A  LF ++ +    P+ VT  
Sbjct: 648 -------------------DVLTFNTIIHGLVIEKRVSDAIWLFHQMKKM-LTPDCVTLC 687

Query: 446 VMICGLCIEGGIEKAYDLLPDMEEKI 471
            ++ G+   G +E A+ +  D   ++
Sbjct: 688 TLLPGVVKNGLMEDAFKIAEDFVHRL 713



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 157/372 (42%), Gaps = 39/372 (10%)

Query: 74   FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
            F  +   +   P + S+N L+    G         L   +   G  PD  + N+L++   
Sbjct: 777  FIRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHG 836

Query: 134  KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
            K   +++ F    +++     P+ +T   +I  L       +A  LF   V+ D  P   
Sbjct: 837  KSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPC 896

Query: 194  PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
                 Y  ++DGL K G + + + LF +M   G  P+  +YN LI       N     G+
Sbjct: 897  ----TYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILI-------NGFGKTGD 945

Query: 254  TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
             + A EL +  V           PD+ SY S++  LC+   VD A   F  +K  G+  D
Sbjct: 946  VNTACELFKRMVREG------IRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLD 999

Query: 314  VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
             + Y+ +IDG     RI++A  L+  ++S G  PD  +YN+LI +      VE+A  LY 
Sbjct: 1000 SIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYE 1059

Query: 374  EMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
            E+  +G+ P                      ++  +N L+ G   S    SA+ ++K++ 
Sbjct: 1060 ELQFIGLEP----------------------NVFTYNALIRGYSMSGNSDSAYAVYKRMM 1097

Query: 434  RYGPEPNVVTYT 445
              G  PN  T+ 
Sbjct: 1098 VGGCSPNTGTFA 1109



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 159/381 (41%), Gaps = 65/381 (17%)

Query: 137 GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNV 196
           G+     A G++    F  +  +   LI  L   G   EA  ++ + V       + P++
Sbjct: 174 GLRQTPFAFGKMREAGFHLNAYSYNGLIHLLLQSGLCREALEMYRRMVL----EGLKPSL 229

Query: 197 ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSA 256
             +++++    K      V+ L  +M+  G+ P+ + Y   IRV   A       G    
Sbjct: 230 KTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRA-------GRIDE 282

Query: 257 ALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR-------- 308
           A  + +   +        C PDV++Y  +I++LC    +D A ELF+ MK+         
Sbjct: 283 ACRIMKRMEDDG------CGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVT 336

Query: 309 ---------------------------GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
                                      G  PDV+ ++ L++  C  G ID+A  L   + 
Sbjct: 337 YITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMR 396

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL------------- 388
            +G +P+  +YNTLI+   ++ ++++AL L+  M ++GV P     +             
Sbjct: 397 KQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSD 456

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
           +A E F  +       ++   N  +  L +  RLR A  +F +L   G  P+ VTY +M+
Sbjct: 457 KALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMM 516

Query: 449 CGLCIEGGIEKAYDLLPDMEE 469
                 G +++A +LL DM E
Sbjct: 517 KCYSKAGQVDEAIELLSDMSE 537



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 142/320 (44%), Gaps = 42/320 (13%)

Query: 69   NDALCF--FNYMIHMQPTPFMPSFNSLLGALAGKKYYVN-FICLSERLNTIGLLPDFVSL 125
            ND + +  F  M +    P + ++N LL A  GK   +N    L E++      P+ ++ 
Sbjct: 805  NDEMAWNLFTEMKNAGCAPDVFTYNLLLDA-HGKSGKINELFELYEQMICSSCKPNTITH 863

Query: 126  NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
            NI++    K   +  A      ++   FSP   T G L+ GL   G+  EA  LF + V 
Sbjct: 864  NIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVD 923

Query: 186  FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
            + CRPN   N I Y  +I+G  K G VN    LF  M   GI PD   Y SL+   C A 
Sbjct: 924  YGCRPN---NAI-YNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAG 979

Query: 246  NWEDA----------------------------KGNTSAALELHEEFVNGNGELGVICHP 277
              +DA                                  AL L++E  +         +P
Sbjct: 980  RVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRG------INP 1033

Query: 278  DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
            D+ +Y S+I +L    +V++A +L+ +++  G+ P+V  Y++LI GY + G  D A  ++
Sbjct: 1034 DLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVY 1093

Query: 338  VSIESEGCIPDTSSYNTLIN 357
              +   GC P+T ++  L N
Sbjct: 1094 KRMMVGGCSPNTGTFAQLPN 1113



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 101/243 (41%), Gaps = 31/243 (12%)

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M+++ I  D+  Y  +  G  + G +      F  +   G   +  SYN LI+   +   
Sbjct: 150 MQNQIIKRDLNTYLIIFKGLFIRGGLRQTPFAFGKMREAGFHLNAYSYNGLIHLLLQSGL 209

Query: 365 VEEALSLYGEMISMGVRPD---NSCILEAA----------ELFRTLHNTKFELDLTVFNC 411
             EAL +Y  M+  G++P     S ++ A            L   + +   + ++  +  
Sbjct: 210 CREALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTI 269

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL------- 464
            +  L ++ R+  A  + K++   G  P+VVTYTV+I  LC  G ++ A +L        
Sbjct: 270 CIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASS 329

Query: 465 --PD------MEEKIREC---LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECM 513
             PD      M +K  +C    +  E   +M      PD IT +IL   L K  N  E  
Sbjct: 330 HKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAF 389

Query: 514 NLL 516
           +LL
Sbjct: 390 HLL 392


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 121/475 (25%), Positives = 208/475 (43%), Gaps = 77/475 (16%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           EL+ A      M      P + +FNSLL  L   +       L + +   G +PD  + +
Sbjct: 261 ELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYS 320

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           IL +   +    + A     +   K    +  T   L+ GLC QGK  +A  +  KF   
Sbjct: 321 ILFDGLLRCDDGNGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFT-- 378

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC---- 242
                ++ + + Y + ++G C+ G +NK  +    M+  G+ P++  +NSLI  +C    
Sbjct: 379 --ENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKE 436

Query: 243 --CAVNW--EDAKGNTSAALELHEEFVNGNG----------------ELGVICHPDVLSY 282
              A  W  + A+   + ++E +   ++G G                E+GV   P+V+SY
Sbjct: 437 MDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGV--KPNVVSY 494

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF----- 337
            S+IN LCKD  + +A+ +  DM  RG++P+  VY+ LIDG C++G++ DA + F     
Sbjct: 495 GSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMR 554

Query: 338 ------------------------------VSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
                                           I S G  PD  +YN+LI+ Y+    V +
Sbjct: 555 SEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSK 614

Query: 368 ALSLYGEMISMGVRPD--------NSCILEAAELFRTLHNTKFELDL----TVFNCLVDG 415
            L LY  M ++G++P         + C  E  EL   L+N   +++L     V+N ++  
Sbjct: 615 CLGLYETMKNLGIKPTVRTYHPLISGCSKEGIELVEKLYNEMLQMNLLPDRVVYNAMIHC 674

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
             +    + A+ L + +   G  P+ +TY  +I G   EG +    DL+ +M+ K
Sbjct: 675 YAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAK 729



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 113/439 (25%), Positives = 188/439 (42%), Gaps = 57/439 (12%)

Query: 74  FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
           F + M      P +  +N L+G L  +K   +   + + +  I L+   V+ N L++ +C
Sbjct: 198 FLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYC 257

Query: 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL-------------F 180
           K+  +  AF    R+  K  +P+++T   L+ GLC   K  EA  L             +
Sbjct: 258 KVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGY 317

Query: 181 TKFVAFD------------------CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           T  + FD                      +  N    + +++GLCK G V K   +    
Sbjct: 318 TYSILFDGLLRCDDGNGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKF 377

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
              G+  D  +YN+ +  YC   +   A       +E  E F       G+   P+ +++
Sbjct: 378 TENGLVADEVIYNTFVNGYCRIGDMNKA----ILTIERMESF-------GL--RPNSITF 424

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
            S+I+  C    +DKA+E    M  +G+ P V  Y++LIDGY  +   D   ++   +E 
Sbjct: 425 NSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEE 484

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSCIL----E 389
            G  P+  SY +LIN   K  K+ EA  +  +MI  GV P         D SC++    +
Sbjct: 485 IGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKD 544

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
           A   F  +  ++    L  +N L+DGLCK  +L  A +   ++   G  P+V+TY  +I 
Sbjct: 545 ALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLIS 604

Query: 450 GLCIEGGIEKAYDLLPDME 468
           G    G + K   L   M+
Sbjct: 605 GYANAGNVSKCLGLYETMK 623



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 107/372 (28%), Positives = 169/372 (45%), Gaps = 31/372 (8%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           ER+ + GL P+ ++ N L++ FC M  +  A   + ++  K  +P V T   LI G    
Sbjct: 410 ERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGY--- 466

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           GK       F      +    V PNV+ Y S+I+ LCKDG + +  ++  DM  RG+ P+
Sbjct: 467 GKLCTFDRCFQILEQME-EIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPN 525

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
           A VYN LI   C         G    AL   +E +           P +++Y  +I+ LC
Sbjct: 526 AQVYNMLIDGSCMV-------GKVKDALRFFDEMMRSE------ISPTLVTYNVLIDGLC 572

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K   + +A++    + S G  PDV+ Y+SLI GY   G +     L+ ++++ G  P   
Sbjct: 573 KKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVR 632

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCILEAAELFRT-----LHNTK 401
           +Y+ LI+  SK E +E    LY EM+ M + PD    N+ I   AE+  T     LH   
Sbjct: 633 TYHPLISGCSK-EGIELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGM 691

Query: 402 FEL----DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
            +     D   +N L+ G  +  +L +  +L   +      P   TY +++ G C     
Sbjct: 692 LDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKELAPKADTYDILVKGHCDLKDF 751

Query: 458 EKAYDLLPDMEE 469
             AY    +M E
Sbjct: 752 SGAYVWYREMVE 763



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/444 (22%), Positives = 182/444 (40%), Gaps = 86/444 (19%)

Query: 100 KKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVT 159
           +K +V  + L   +   G   D       +    K+  +      L  + ++   P+V  
Sbjct: 154 EKQFVKVVDLFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFI 213

Query: 160 LGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLF 219
              LI GLC + +  +A  +F +     C  N++ +++ Y ++IDG CK G ++    + 
Sbjct: 214 YNVLIGGLCREKRIRDAEKMFDEM----CNINLVGSIVTYNTLIDGYCKVGELDAAFKMR 269

Query: 220 LDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG--------------------------- 252
             MK + + P+   +NSL+   C     ++A+                            
Sbjct: 270 ERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRC 329

Query: 253 -NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
            + + A+EL+E+      E G+  +    S   ++N LCK   V+KA+E+       G++
Sbjct: 330 DDGNGAMELYEQAT----EKGIRINNYTGSI--LLNGLCKQGKVEKAEEILKKFTENGLV 383

Query: 312 PDVVVYSSLIDGYCLMG-----------------------------------RIDDARKL 336
            D V+Y++ ++GYC +G                                    +D A + 
Sbjct: 384 ADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEW 443

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------- 383
              +  +G  P   +YNTLI+ Y K+   +    +  +M  +GV+P+             
Sbjct: 444 VKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCK 503

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
           +  ILEA  + R +       +  V+N L+DG C   +++ A   F ++ R    P +VT
Sbjct: 504 DGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVT 563

Query: 444 YTVMICGLCIEGGIEKAYDLLPDM 467
           Y V+I GLC +G + +A D L  +
Sbjct: 564 YNVLIDGLCKKGKLTEAEDFLTQI 587



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 152/342 (44%), Gaps = 29/342 (8%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E++ A  +   M     TP + ++N+L+        +     + E++  IG+ P+ VS  
Sbjct: 436 EMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYG 495

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+NC CK   + +A + L  ++ +   P+      LI G CM GK  +A   F + +  
Sbjct: 496 SLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMM-- 553

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             R  + P ++ Y  +IDGLCK G + +       +   G  PD   YNSLI  Y  A N
Sbjct: 554 --RSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGN 611

Query: 247 -------WEDAK----------------GNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
                  +E  K                G +   +EL E+  N   ++ ++  PD + Y 
Sbjct: 612 VSKCLGLYETMKNLGIKPTVRTYHPLISGCSKEGIELVEKLYNEMLQMNLL--PDRVVYN 669

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
           ++I+   +     KA  L   M  +GI PD + Y+SLI G+   G++ + + L  +++++
Sbjct: 670 AMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAK 729

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
              P   +Y+ L+  +  ++    A   Y EM+     P+ S
Sbjct: 730 ELAPKADTYDILVKGHCDLKDFSGAYVWYREMVENNFLPNAS 771



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 149/317 (47%), Gaps = 44/317 (13%)

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
           KV  LF++++  G   D F+Y   I+    AV  ++        L++  EF++   + GV
Sbjct: 159 KVVDLFMEIENSGFRTDTFMYAKAIQA---AVKLQN--------LKMGMEFLDSMRKRGV 207

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
              P+V  Y  +I  LC++  +  A+++F +M +  ++  +V Y++LIDGYC +G +D A
Sbjct: 208 --RPNVFIYNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAA 265

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---SCILE- 389
            K+   ++ +   P+  ++N+L++   K+ K++EA SL  EM   G  PD    S + + 
Sbjct: 266 FKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDG 325

Query: 390 ---------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
                    A EL+         ++    + L++GLCK  ++  A E+ KK    G   +
Sbjct: 326 LLRCDDGNGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVAD 385

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLH 482
            V Y   + G C  G + KA   +  ME                    ++E  KA E + 
Sbjct: 386 EVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVK 445

Query: 483 KMAKRYVKPDEITVSIL 499
           KMA++ V P   T + L
Sbjct: 446 KMAEKGVTPSVETYNTL 462


>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
 gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
          Length = 509

 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 129/452 (28%), Positives = 200/452 (44%), Gaps = 62/452 (13%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD  +   L+  FCK   +  A   LG +     +P +VT G LIR LC      +A  +
Sbjct: 50  PDDFTYGTLIRGFCKAEQIPQAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQI 109

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F + +       V P+   Y  +I  LCK   ++     F  M   G  PD   Y  L+ 
Sbjct: 110 FHQMIDM----KVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVH 165

Query: 240 VYCCAVNWED---------AKGNTSAALELHEEFVNGNGELGVICH-------------- 276
               A  WE          +KG+ S  L  +   VNG  + G I                
Sbjct: 166 SLFKACKWEQGHQIFEEMLSKGH-SPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRS 224

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P    Y ++I+ LCK    D+A+ELF +M + G + DV+VY+S I G C  G++D+A+ +
Sbjct: 225 PSGSLYSTLIDGLCKHDRHDEARELF-EMAA-GDVQDVIVYTSFISGLCKAGKLDEAKAV 282

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSCI 387
            V +   GC PD  SYN +I S  K  +V EA  L  + +     P         D  C 
Sbjct: 283 HVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCK 342

Query: 388 LEAAE-----LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
               E     L R L        +  ++ ++DGLCK+ RL  A+ + +K+ R G  P+VV
Sbjct: 343 SRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVV 402

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEEK------------IR------ECLKAIELLHKM 484
           TYT +I   C  G +++A +L   M E+            IR      +  +AI ++ +M
Sbjct: 403 TYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEAIAMIEEM 462

Query: 485 AKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           A R ++P+ +++S + + L K+    E   L+
Sbjct: 463 AGRGIQPNVVSLSTIVDGLCKESRVEEARLLM 494



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 120/439 (27%), Positives = 193/439 (43%), Gaps = 85/439 (19%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLS----ERLNTIGLLPDFVS 124
           + AL  F+ MI M+  P    +  ++G L      +N + L+    ER+   G LPD V+
Sbjct: 104 DKALQIFHQMIDMKVKPDAFLYTVVIGHLCK----INKLDLAASYFERMVQSGCLPDKVT 159

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
             +L++   K             +L K  SP++VT   ++ G C  G+  +A  L  +  
Sbjct: 160 YTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLK 219

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
                    P+   Y+++IDGLCK    ++ R LF +M   G   D  VY S I   C A
Sbjct: 220 G----TGRSPSGSLYSTLIDGLCKHDRHDEARELF-EMAA-GDVQDVIVYTSFISGLCKA 273

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
              ++AK        +H + +         C PD +SY  II SLCKD  V +AKEL   
Sbjct: 274 GKLDEAKA-------VHVKMIEAG------CAPDPVSYNVIIYSLCKDNRVSEAKELMDQ 320

Query: 305 M--------------------KSRGI----------------IPDVVVYSSLIDGYCLMG 328
                                KSR +                 P VV YS++IDG C   
Sbjct: 321 AMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKAD 380

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL 388
           R+DDA  +   +   GC+PD  +Y  +I+++ K+ +++EA                    
Sbjct: 381 RLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEA-------------------- 420

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
              ELF+ +H     LD+  +N L+ G C++ ++  A  + +++   G +PNVV+ + ++
Sbjct: 421 --RELFQRMHERGCALDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGIQPNVVSLSTIV 478

Query: 449 CGLCIEGGIEKAYDLLPDM 467
            GLC E  +E+A  L+  M
Sbjct: 479 DGLCKESRVEEARLLMEKM 497



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 118/448 (26%), Positives = 190/448 (42%), Gaps = 82/448 (18%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G   +  + N L+  F       +A+      L  +F PD  T G LIRG C   +  +A
Sbjct: 12  GFQHNTYTCNSLLEVFVNDGCHREAYRVFKDELVTLFRPDDFTYGTLIRGFCKAEQIPQA 71

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L  +  A      + P ++ + S+I  LC+  F +K   +F  M    + PDAF+Y  
Sbjct: 72  VNLLGEMKA----AGITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVKPDAFLYTV 127

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           +I  + C +N  D       A    E  V         C PD ++Y  +++SL K    +
Sbjct: 128 VIG-HLCKINKLDL------AASYFERMVQSG------CLPDKVTYTVLVHSLFKACKWE 174

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +  ++F +M S+G  P++V Y+++++GYC  GRID A  L   ++  G  P  S Y+TLI
Sbjct: 175 QGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLI 234

Query: 357 NSYSKIE---------------------------------KVEEALSLYGEMISMGVRPD 383
           +   K +                                 K++EA +++ +MI  G  PD
Sbjct: 235 DGLCKHDRHDEARELFEMAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPD 294

Query: 384 -------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
                        ++ + EA EL       K    + V   LVDGLCKS R+  A  + +
Sbjct: 295 PVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILE 354

Query: 431 KLPRYGPE-PNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KI 471
           ++   G   P+VVTY+ +I GLC    ++ AY +L  M                    K+
Sbjct: 355 RMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKV 414

Query: 472 RECLKAIELLHKMAKRYVKPDEITVSIL 499
               +A EL  +M +R    D +  +IL
Sbjct: 415 GRLDEARELFQRMHERGCALDVVAYNIL 442



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 150/349 (42%), Gaps = 47/349 (13%)

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
           RP    N     S+++    DG   +   +F D       PD F Y +LIR +C A    
Sbjct: 10  RPGFQHNTYTCNSLLEVFVNDGCHREAYRVFKDELVTLFRPDDFTYGTLIRGFCKAEQIP 69

Query: 249 DAKGNTSAALELHEEFVNGNGELGVI-CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
            A              VN  GE+      P ++++ S+I  LC+    DKA ++F  M  
Sbjct: 70  QA--------------VNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMID 115

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
             + PD  +Y+ +I   C + ++D A   F  +   GC+PD  +Y  L++S  K  K E+
Sbjct: 116 MKVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQ 175

Query: 368 ALSLYGEMISMGVRPD---------NSC----ILEAAELFRTLHNTKFELDLTVFNCLVD 414
              ++ EM+S G  P+           C    I +A  L R L  T      ++++ L+D
Sbjct: 176 GHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLID 235

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC 474
           GLCK  R   A ELF+     G   +V+ YT  I GLC  G +++A              
Sbjct: 236 GLCKHDRHDEARELFEMAA--GDVQDVIVYTSFISGLCKAGKLDEA-------------- 279

Query: 475 LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
            KA+ +  KM +    PD ++ +++   L KD    E   L+   + R 
Sbjct: 280 -KAVHV--KMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERK 325



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 113/233 (48%), Gaps = 17/233 (7%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  PD VS N+++   CK   VS+A   + + + +   P V     L+ GLC   +  EA
Sbjct: 290 GCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEA 349

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             +  + +    R    P+V+ Y+++IDGLCK   ++   V+   M+  G  PD   Y +
Sbjct: 350 CVILERMLETGDRA---PSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTA 406

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           +I  +C     ++A+           E      E G  C  DV++Y  +I   C+   VD
Sbjct: 407 IIDAFCKVGRLDEAR-----------ELFQRMHERG--CALDVVAYNILIRGYCRAAKVD 453

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
           +A  +  +M  RGI P+VV  S+++DG C   R+++AR L   +  E  +PD+
Sbjct: 454 EAIAMIEEMAGRGIQPNVVSLSTIVDGLCKESRVEEARLLMEKMNFES-LPDS 505


>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
 gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
 gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
          Length = 913

 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 128/495 (25%), Positives = 219/495 (44%), Gaps = 57/495 (11%)

Query: 70  DALCFFNYMIH---MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           DAL  +  M+H   + PT F  +F     AL         + L   +   G +PD V   
Sbjct: 157 DALALYRRMVHRDRVPPTTF--TFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQ 214

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            +++  C   GV++A   L  +L    + DV T   ++RG+C  G+  EA+ L  + +  
Sbjct: 215 TVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTK 274

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C    +P V+ Y  ++ GLC+    ++ R +     GR    +  ++N++I   C    
Sbjct: 275 GC----MPGVMTYGFLLQGLCRVRQADEARAML----GRVPELNVVLFNTVIG-GCL--- 322

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
              A+G  + A EL+E      G  G  C PD  +Y  +++ LCK   +  A  L  +M+
Sbjct: 323 ---AEGKLAEATELYETM----GLKG--CQPDAHTYSILMHGLCKLGRIGSAVRLLREME 373

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            +G  P+VV Y+ ++  +C  G  DD R L   + ++G   ++  YN +I +  K  +++
Sbjct: 374 KKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMD 433

Query: 367 EALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLV 413
           EA+ L  EM S G  PD             N  + EA  +F  L       +   +N ++
Sbjct: 434 EAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTII 493

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI-- 471
             L +  R + A  L K++  +G   +VV+Y  +I  +C +G ++++  LL +M EK   
Sbjct: 494 HALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIK 553

Query: 472 ----------------RECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
                           R    A+EL  +M  + + PD +T + L   L K    H  +NL
Sbjct: 554 PNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNL 613

Query: 516 LPSFLSRNQEESKLT 530
           L    + N     +T
Sbjct: 614 LEKLHNENVHPDIIT 628



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 117/454 (25%), Positives = 200/454 (44%), Gaps = 69/454 (15%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           + +A    N M+ M     + +F+ ++  + G         L +R+ T G +P  ++   
Sbjct: 226 VTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGF 285

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+   C++    +A   LGR    V   +VV    +I G   +GK  EA+ L+       
Sbjct: 286 LLQGLCRVRQADEARAMLGR----VPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKG 341

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C+P+       Y+ ++ GLCK G +     L  +M+ +G  P+   Y  ++  +C    W
Sbjct: 342 CQPDAH----TYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMW 397

Query: 248 EDAKG----NTSAALELHEEFVNG-----------NGELGVI-------CHPDVLSYCSI 285
           +D +      ++  L L+ +  NG           +  +G+I       C+PD+ SY +I
Sbjct: 398 DDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTI 457

Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
           I  LC +  +++A+ +F ++   G++ + + Y+++I      GR  DA +L   +   GC
Sbjct: 458 IYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGC 517

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELD 405
             D  SYN LI +  K   V+ +L L  EM   G++P+N                     
Sbjct: 518 SLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNN--------------------- 556

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
              +N L+  LCK  R+R A EL K++   G  P++VTY  +I GLC  G +        
Sbjct: 557 -VSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMH------- 608

Query: 466 DMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                      A+ LL K+    V PD IT +IL
Sbjct: 609 ----------AALNLLEKLHNENVHPDIITYNIL 632



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 154/342 (45%), Gaps = 30/342 (8%)

Query: 90  FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149
           FN+++G    +        L E +   G  PD  + +ILM+  CK+  +  A   L  + 
Sbjct: 314 FNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREME 373

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD 209
           +K F+P+VVT   ++   C  G + +   L  +  A      +  N   Y  +I  LCKD
Sbjct: 374 KKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSA----KGLTLNSQGYNGMIYALCKD 429

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
           G +++   L  +M+ +G  PD   YN++I   C     E+A+        L EE V  NG
Sbjct: 430 GRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFE---NLLEEGVVANG 486

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
                     ++Y +II++L +D     A  L  +M   G   DVV Y+ LI   C  G 
Sbjct: 487 ----------ITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGN 536

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NS 385
           +D +  L   +  +G  P+  SYN LI+   K  +V +AL L  +M++ G+ PD    N+
Sbjct: 537 VDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNT 596

Query: 386 CI--------LEAA-ELFRTLHNTKFELDLTVFNCLVDGLCK 418
            I        + AA  L   LHN     D+  +N L+   CK
Sbjct: 597 LINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCK 638



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 21/124 (16%)

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFE 403
           G  P   SYN +++  ++ +   +AL+LY  M+                     H  +  
Sbjct: 134 GVQPSFRSYNVVLSVLARADCHADALALYRRMV---------------------HRDRVP 172

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
                F      LC+  R   A  L + + R+G  P+ V Y  +I  LC +GG+ +A  L
Sbjct: 173 PTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATL 232

Query: 464 LPDM 467
           L +M
Sbjct: 233 LNEM 236



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 2/127 (1%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G V+   +L     M      P   S+N L+  L  ++   + + LS+++   GL PD
Sbjct: 533 KDGNVD--RSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPD 590

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+ N L+N  CKM  +  A   L ++  +   PD++T   LI   C      +A+ L  
Sbjct: 591 IVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLN 650

Query: 182 KFVAFDC 188
           + +A  C
Sbjct: 651 RAMAAVC 657


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 116/408 (28%), Positives = 191/408 (46%), Gaps = 48/408 (11%)

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            ++LMN +      SDA      + +        + G L   L M+   T  +  F + +
Sbjct: 158 FSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRL-MKLNLTSPAWAFYEEI 216

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
             DC     P+V  +  ++  LCK+  +N+ ++LF ++  RG+ P    +N+LI  YC  
Sbjct: 217 -LDC--GYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYC-- 271

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                  GN      L + F+  N        PDV +Y  +IN LCK+  +D A +LFL+
Sbjct: 272 -----KSGNLDQGFRL-KRFMMENRVF-----PDVFTYSVLINGLCKEGQLDDANKLFLE 320

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M  RG++P+ V +++LI+G+C+ GR D   +++  +  +G  PD  +YNTLIN   K+  
Sbjct: 321 MCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGD 380

Query: 365 VEEALSLYGEMISMGVRPD--------NSCILE-----AAELFRTLHNTKFELDLTVFNC 411
           + EA  L  EM   G++PD        + C  E     A E+ + +     ELD   F  
Sbjct: 381 LREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTA 440

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME--- 468
           L+ G C+  ++  A    +++   G +P+  TYT++I G C +G ++  + LL +M+   
Sbjct: 441 LISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDG 500

Query: 469 ---------------EKIRECLKAIELLHKMAKRYVKPDEITVSILEE 501
                           K  +   A  LL  M    V PD+IT +IL E
Sbjct: 501 HVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLE 548



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 157/345 (45%), Gaps = 44/345 (12%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           A  F+  ++     P +  FN L+  L  +        L   +   GL P  VS N L+N
Sbjct: 209 AWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLIN 268

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL----------- 179
            +CK   +   F     ++     PDV T   LI GLC +G+  +A+ L           
Sbjct: 269 GYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVP 328

Query: 180 ----FTKFVAFDC----------------RPNVIPNVICYASIIDGLCKDGFVNKVRVLF 219
               FT  +   C                R  V P+VI Y ++I+GLCK G + + + L 
Sbjct: 329 NDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLV 388

Query: 220 LDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDV 279
           ++M  RG+ PD F Y  LI   CC       +G+  +ALE+ +E V    EL      D 
Sbjct: 389 IEMTQRGLKPDKFTYTMLID-GCC------KEGDLESALEIRKEMVKEGIEL------DN 435

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           +++ ++I+  C++  V +A+    +M   GI PD   Y+ +I G+C  G +    KL   
Sbjct: 436 VAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKE 495

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           ++ +G +P   +YN L+N   K  +++ A  L   M+++GV PD+
Sbjct: 496 MQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDD 540



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 118/300 (39%), Gaps = 48/300 (16%)

Query: 279 VLSYCSIINSLCKDVLVDKAKELFL-----------------DMKSRGIIPDVVVYSSLI 321
           + SYC++ + LC   ++ +A+ L                    +++RG     +V+S L+
Sbjct: 103 IHSYCTMTHFLCTHKMLSEAQSLLQFVVSRKGKNSASSVFTSVLEARGTHQSNLVFSVLM 162

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
           + Y   G   DA + F  +          S   L +   K+     A + Y E++  G  
Sbjct: 163 NAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEEILDCGYP 222

Query: 382 PD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
           PD                I EA  LF  +        +  FN L++G CKS  L   + L
Sbjct: 223 PDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRL 282

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI-------------RECL 475
            + +      P+V TY+V+I GLC EG ++ A  L  +M ++                C+
Sbjct: 283 KRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCV 342

Query: 476 K-----AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
                  +E+  +M ++ VKPD IT + L   L K  +  E   L+     R  +  K T
Sbjct: 343 TGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFT 402



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 40/95 (42%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ PD  +  ++++ FCK   V   F  L  +      P VVT   L+ GLC QG+   A
Sbjct: 465 GIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNA 524

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF 211
           + L    +     P+ I   I     +    + GF
Sbjct: 525 NMLLDAMLNLGVVPDDITYNILLERTLQAWKQGGF 559


>gi|356571194|ref|XP_003553764.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g04760, chloroplastic-like [Glycine max]
          Length = 531

 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 113/405 (27%), Positives = 191/405 (47%), Gaps = 37/405 (9%)

Query: 80  HMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVS 139
            + P+P +P  ++         Y V      +R+   G  PD V+ NIL+   C    + 
Sbjct: 87  RLHPSPQIPHPSAKPTESIPHAYQV-----LDRMKNKGFSPDIVTYNILIGSLCSRGMLH 141

Query: 140 DAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICY 199
            A     ++L++ F+P VVT   LI    +QG   EA  L  +    + +P+V P    Y
Sbjct: 142 AALEFKNQLLKENFNPTVVTYTILIEATLLQGGIDEAIKLLDEMFEINLQPDVFP----Y 197

Query: 200 ASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE 259
            SII  +C++G+V++   +   +  +G   D   YN L+R       WE       A  E
Sbjct: 198 NSIIX-MCREGYVDRAFEVISSISSKGYALDVITYNILLRSLXNQGKWE-------AGFE 249

Query: 260 LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSS 319
           L  + V         C  +V++Y  +I+SLC+D  V++   L  DMK +G+ PD   Y  
Sbjct: 250 LMSDMVAKG------CEANVVTYSVLISSLCRDGKVEEGVGLLKDMKKKGLEPDGYCYDP 303

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           LI   C  GR+D A ++   + S+GC+PD  +YNT++    K ++ +EALS++ ++  +G
Sbjct: 304 LIAVLCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVG 363

Query: 380 VRPDNSCILEA-AELFRTLHNTK-----------FELDLTVFNCLVDGLCKSWRLRSAWE 427
             P+ S      + L  + H  +            + D+  +N L+  LC+   +  A E
Sbjct: 364 CSPNASSYNTVFSALGSSGHKVRALGMILEMLDXVDPDVIAYNSLISCLCRDGMVDEAIE 423

Query: 428 LFKKLPRYGPE--PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           L   +     E  P+VV+Y +++ GLC  G +  A ++L  M +K
Sbjct: 424 LLVDMEMESSECKPSVVSYNIVLLGLCRVGRVSDATEVLAAMVDK 468



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 173/397 (43%), Gaps = 71/397 (17%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+ AL F N ++     P + ++  L+ A   +      I L + +  I L PD    N 
Sbjct: 140 LHAALEFKNQLLKENFNPTVVTYTILIEATLLQGGIDEAIKLLDEMFEINLQPDVFPYNS 199

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++   C+   V  AF  +  I  K ++ DV+T   L+R L  QGK+     L +  VA  
Sbjct: 200 IIX-MCREGYVDRAFEVISSISSKGYALDVITYNILLRSLXNQGKWEAGFELMSDMVAKG 258

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI-------------------- 227
           C  NV+     Y+ +I  LC+DG V +   L  DMK +G+                    
Sbjct: 259 CEANVV----TYSVLISSLCRDGKVEEGVGLLKDMKKKGLEPDGYCYDPLIAVLCKEGRV 314

Query: 228 ---------------YPDAFVYNSLIRVYCCAVNWEDA---------KGNTSAALELHEE 263
                           PD   YN+++   C     ++A          G +  A   +  
Sbjct: 315 DLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNTV 374

Query: 264 F--VNGNGE----LGVICH------PDVLSYCSIINSLCKDVLVDKAKELFLDMK--SRG 309
           F  +  +G     LG+I        PDV++Y S+I+ LC+D +VD+A EL +DM+  S  
Sbjct: 375 FSALGSSGHKVRALGMILEMLDXVDPDVIAYNSLISCLCRDGMVDEAIELLVDMEMESSE 434

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
             P VV Y+ ++ G C +GR+ DA ++  ++  +GC+P+ ++Y  LI        + +A 
Sbjct: 435 CKPSVVSYNIVLLGLCRVGRVSDATEVLAAMVDKGCLPNETTYTFLIEGIGFGGWLNDAR 494

Query: 370 SLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406
            L   +++M    ++S        F  L+ T  +LD+
Sbjct: 495 DLATTLVNMDAISEHS--------FERLYKTFCKLDV 523



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 91/231 (39%), Gaps = 40/231 (17%)

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           +  A ++   MK++G  PD+V Y+ LI   C  G +  A +    +  E   P   +Y  
Sbjct: 105 IPHAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLHAALEFKNQLLKENFNPTVVTYTI 164

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           LI          EA  L G             I EA +L   +     + D+  +N ++ 
Sbjct: 165 LI----------EATLLQGG------------IDEAIKLLDEMFEINLQPDVFPYNSIIX 202

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC 474
            +C+   +  A+E+   +   G   +V+TY +++  L  +G  E  ++L+ DM  K  E 
Sbjct: 203 -MCREGYVDRAFEVISSISSKGYALDVITYNILLRSLXNQGKWEAGFELMSDMVAKGCEA 261

Query: 475 LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQE 525
                            + +T S+L   L +D    E + LL     +  E
Sbjct: 262 -----------------NVVTYSVLISSLCRDGKVEEGVGLLKDMKKKGLE 295


>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
 gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
          Length = 367

 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 110/413 (26%), Positives = 191/413 (46%), Gaps = 56/413 (13%)

Query: 87  MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALG 146
           M ++N+L+GA   +        +   +   GL P   + N ++N  CK    + A   L 
Sbjct: 1   MVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILI 60

Query: 147 RILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGL 206
            +L    SPD  T   L+   C +  F+EA  +F + +    R  V+P+++ ++S++   
Sbjct: 61  EMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEML----RQGVVPDLVSFSSLMAVF 116

Query: 207 CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266
            ++  +++  V F DMK  G+ PD  +Y  L+  YC         GN   AL++ +E + 
Sbjct: 117 SRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYC-------RNGNMLEALKIRDEML- 168

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
              E G  C  DV++Y +I+N LCK+ ++  A +LF +M  RG +PD   +++LI G+C 
Sbjct: 169 ---EQG--CVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQ 223

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC 386
            G +  A  LF ++      PD  +YNTLI+ + K+ ++E+A  L+  MIS  + P++  
Sbjct: 224 DGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNH-- 281

Query: 387 ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTV 446
                                 +  L++  C    +  A+ L+  +   G +P +VT   
Sbjct: 282 --------------------ITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNT 321

Query: 447 MICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           +I G C  G                 +  KA E L +M  + V PD I+ + L
Sbjct: 322 VIKGYCRSG-----------------DSSKADEFLGRMIAKGVAPDHISYNTL 357



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 168/381 (44%), Gaps = 39/381 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L +A    N M      P + ++N+++  L  K  Y     +   +  IGL PD  + N 
Sbjct: 17  LEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNT 76

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+   C+    S+A    G +LR+   PD+V+   L+          +A   F     F 
Sbjct: 77  LLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKF- 135

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               ++P+ + Y  ++ G C++G + +   +  +M  +G   D   YN+++   C     
Sbjct: 136 ---GLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKML 192

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
            DA        +L +E V    E G +  PD  ++ ++I+  C+D  + KA  LF  M  
Sbjct: 193 TDAD-------KLFDEMV----ERGAL--PDFYTFTTLIHGHCQDGNMTKALSLFGTMTQ 239

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           R I PD+V Y++LIDG+C +G ++ A +L+  + S    P+  +Y  LIN+Y  +  V E
Sbjct: 240 RNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSE 299

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           A  L+  MI  G++P                       L   N ++ G C+S     A E
Sbjct: 300 AFRLWDVMIEKGIKP----------------------TLVTCNTVIKGYCRSGDSSKADE 337

Query: 428 LFKKLPRYGPEPNVVTYTVMI 448
              ++   G  P+ ++Y  +I
Sbjct: 338 FLGRMIAKGVAPDHISYNTLI 358



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 131/283 (46%), Gaps = 17/283 (6%)

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           F  M+     P + SF+SL+   +  ++    +     +   GL+PD V   +LM+ +C+
Sbjct: 94  FGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCR 153

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
              + +A      +L +    DV+    ++ GLC +   T+A  LF + V        +P
Sbjct: 154 NGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMV----ERGALP 209

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           +   + ++I G C+DG + K   LF  M  R I PD   YN+LI  +C         G  
Sbjct: 210 DFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKV-------GEM 262

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
             A EL +      G +     P+ ++Y  +IN+ C    V +A  L+  M  +GI P +
Sbjct: 263 EKASELWD------GMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTL 316

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           V  +++I GYC  G    A +    + ++G  PD  SYNTLIN
Sbjct: 317 VTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLIN 359



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 145/327 (44%), Gaps = 52/327 (15%)

Query: 196 VICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTS 255
           ++ Y ++I   C++G + +   +   M  +G+ P  F YN++I   C    +  AKG   
Sbjct: 1   MVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKG--- 57

Query: 256 AALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV 315
             +E+          L +   PD  +Y +++   C+     +AKE+F +M  +G++PD+V
Sbjct: 58  ILIEM----------LNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLV 107

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
            +SSL+  +     +D A   F  ++  G +PD   Y  L++ Y +   + EAL +  EM
Sbjct: 108 SFSSLMAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEM 167

Query: 376 ISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
           +  G      C+L                D+  +N +++GLCK   L  A +LF ++   
Sbjct: 168 LEQG------CVL----------------DVIAYNTILNGLCKEKMLTDADKLFDEMVER 205

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEIT 495
           G  P+  T+T +I G C +G + KA                 + L   M +R +KPD + 
Sbjct: 206 GALPDFYTFTTLIHGHCQDGNMTKA-----------------LSLFGTMTQRNIKPDIVA 248

Query: 496 VSILEELLNKDENCHECMNLLPSFLSR 522
            + L +   K     +   L    +SR
Sbjct: 249 YNTLIDGFCKVGEMEKASELWDGMISR 275



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 123/258 (47%), Gaps = 30/258 (11%)

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
           +++Y ++I + C++ L+++A E+   M  +G+ P +  Y+++I+G C  GR   A+ + +
Sbjct: 1   MVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILI 60

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NS 385
            + + G  PDT++YNTL+    + +   EA  ++GEM+  GV PD             N 
Sbjct: 61  EMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNR 120

Query: 386 CILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
            + +A   FR +       D  ++  L+ G C++  +  A ++  ++   G   +V+ Y 
Sbjct: 121 HLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYN 180

Query: 446 VMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505
            ++ GLC E        +L D          A +L  +M +R   PD  T + L     +
Sbjct: 181 TILNGLCKE-------KMLTD----------ADKLFDEMVERGALPDFYTFTTLIHGHCQ 223

Query: 506 DENCHECMNLLPSFLSRN 523
           D N  + ++L  +   RN
Sbjct: 224 DGNMTKALSLFGTMTQRN 241


>gi|326506436|dbj|BAJ86536.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 616

 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 120/441 (27%), Positives = 194/441 (43%), Gaps = 96/441 (21%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFS----PDVVTLGCLIRGLC 168
           L+  G   D  + N++++  C+  G  D  V L   LRK+ S    PD+V+   +++GLC
Sbjct: 169 LHAKGCTLDSGNCNLVVSAICEQ-GCVDEGVEL---LRKLPSFGCEPDIVSYNAVLKGLC 224

Query: 169 MQGKFTEASGLFTKFV----AFDCRP--NVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           M  ++ +   L  + V    A    P     P++  YA+IIDG+CKDG       +   M
Sbjct: 225 MAKRWDDVEELMVEMVRVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRM 284

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAK----------------------------GNT 254
              G+ P+   YN++++  C A  WE+A+                            G  
Sbjct: 285 PSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLV 344

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
              +EL E+ +         C PDV++Y ++IN  CK+ LVD+A  L  +M + G  P+ 
Sbjct: 345 DRVIELLEQMLEHG------CIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNT 398

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN----------------- 357
           + Y+ ++ G C   R  DA++L   +  +GC+P+  ++NTLIN                 
Sbjct: 399 ISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQ 458

Query: 358 -----------SYS-------KIEKVEEALSLYGEMISMGVRPDNSCILEAA-------- 391
                      SYS       K  K EEAL L   MI+ G+ P+       A        
Sbjct: 459 MLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGR 518

Query: 392 -----ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTV 446
                ++F ++ +     D  ++N ++  LCK W    A + F  +   G  PN  TYT+
Sbjct: 519 TDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTI 578

Query: 447 MICGLCIEGGIEKAYDLLPDM 467
           +I GL  EG + +A DLL ++
Sbjct: 579 LIRGLASEGLVREAQDLLSEL 599



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 160/349 (45%), Gaps = 34/349 (9%)

Query: 202 IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261
           ++  +C+ G V++   L   +   G  PD   YN++++  C A  W+D +      + +H
Sbjct: 184 VVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVH 243

Query: 262 EEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
           E   +   E G  C PD+  Y +II+ +CKD   + A ++   M S G+ P+VV Y++++
Sbjct: 244 EAL-SQMPEHG--CTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVL 300

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
            G C   R ++A  L   +  E C  D  ++N L++ + +   V+  + L  +M+  G  
Sbjct: 301 KGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCI 360

Query: 382 PD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
           PD                + EA  L + +     + +   +  ++ GLC++ R   A EL
Sbjct: 361 PDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQEL 420

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL---------PDMEE---------K 470
              + + G  PN VT+  +I  +C +G  E+A +LL         PD+           K
Sbjct: 421 ISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 480

Query: 471 IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519
             +  +A+ELL+ M  + + P+ I  S +   L+++    + + +  S 
Sbjct: 481 AGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSI 529



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 105/427 (24%), Positives = 169/427 (39%), Gaps = 79/427 (18%)

Query: 160 LGCLIRGLCMQGKFTEAS------GLFTKFVAFD------CRPN-------------VIP 194
           L  LIR LC  G+  +A+      G     VA++      CR               V P
Sbjct: 47  LSALIRSLCAAGRTADAARALDTAGDAAGVVAYNAMIAGYCRAGQVAAARRLAAAVPVPP 106

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           N   Y  I+  LC  G +     +  +M  RG      + + ++   C         G  
Sbjct: 107 NAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAAC------RGGGFR 160

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
           SA   L      G       C  D  +   +++++C+   VD+  EL   + S G  PD+
Sbjct: 161 SAVRALQVLHAKG-------CTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDI 213

Query: 315 VVYSSLIDGYCLMGRIDDARKLFV----------SIESEGCIPDTSSYNTLINSYSKIEK 364
           V Y++++ G C+  R DD  +L V           +   GC PD   Y T+I+   K   
Sbjct: 214 VSYNAVLKGLCMAKRWDDVEELMVEMVRVHEALSQMPEHGCTPDLRMYATIIDGICKDGH 273

Query: 365 VEEALSLYGEMISMGVRPDNSC---IL----------EAAELFRTLHNTKFELDLTVFNC 411
            E A  +   M S G++P+  C   +L          EA +L   +      LD   FN 
Sbjct: 274 HEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNI 333

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE-- 469
           LVD  C++  +    EL +++  +G  P+V+TYT +I G C EG +++A  LL +M    
Sbjct: 334 LVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACG 393

Query: 470 ----------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECM 513
                           +    + A EL+  M ++   P+ +T + L   + K     + +
Sbjct: 394 CKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAI 453

Query: 514 NLLPSFL 520
            LL   L
Sbjct: 454 ELLKQML 460



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 131/289 (45%), Gaps = 17/289 (5%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           +FN L+            I L E++   G +PD ++   ++N FCK   V +A + L  +
Sbjct: 330 TFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNM 389

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
                 P+ ++   +++GLC   ++ +A  L +  +   C    +PN + + ++I+ +CK
Sbjct: 390 SACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGC----LPNPVTFNTLINFMCK 445

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
            G   +   L   M   G  PD   Y+++I       +     G T  ALEL    +N  
Sbjct: 446 KGLAEQAIELLKQMLVNGCSPDLISYSTVI-------DGLGKAGKTEEALELLNVMINK- 497

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
              G+   P+ + Y S+ ++L ++   DK  ++F  ++   +  D  +Y+++I   C   
Sbjct: 498 ---GIT--PNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRW 552

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
             D A   F  + S GC+P+ S+Y  LI   +    V EA  L  E+ S
Sbjct: 553 ETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVREAQDLLSELCS 601



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 99/239 (41%), Gaps = 52/239 (21%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DA    ++MI     P   +FN+L+           F+C        GL    + L    
Sbjct: 416 DAQELISHMIQQGCLPNPVTFNTLIN----------FMCKK------GLAEQAIEL---- 455

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
                          L ++L    SPD+++   +I GL   GK  EA  L    +     
Sbjct: 456 ---------------LKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMI----N 496

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
             + PN I Y+S+   L ++G  +K+  +F  ++   +  DA +YN++I   C    WE 
Sbjct: 497 KGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLC--KRWE- 553

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
               T  A++     V+ NG     C P+  +Y  +I  L  + LV +A++L  ++ SR
Sbjct: 554 ----TDRAIDFFAYMVS-NG-----CMPNESTYTILIRGLASEGLVREAQDLLSELCSR 602


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 112/463 (24%), Positives = 208/463 (44%), Gaps = 64/463 (13%)

Query: 81  MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSD 140
           M   P   ++  ++  L  +    + + L + +   G  P  V+  +L+   CK  G  +
Sbjct: 135 MPVPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGE 194

Query: 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200
           A   L  +  K  +P++VT   +I G+C +G+  +A  +  +  ++  +P+++     Y 
Sbjct: 195 AMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVS----YT 250

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL 260
           +++ GLC     + V+VLF +M  +   P+   ++ L+R +C         G    A+++
Sbjct: 251 TVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFC-------RGGMVERAIQV 303

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
            ++           C P+      +IN++CK   VD A +   +M   G  PD + Y+++
Sbjct: 304 LQQMSQHG------CTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTV 357

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           + G C  GR + A++L   +  + C P+  ++NT I    +   +E+A+ L   M     
Sbjct: 358 LRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELM----- 412

Query: 381 RPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
            P+  C                 + +  +N LV G C   R+ SA ELF  LP    EPN
Sbjct: 413 -PEYGC----------------SVGIVTYNALVHGFCVQGRVDSALELFNNLP---CEPN 452

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC--------------------LKAIEL 480
            +TYT ++ GLC    ++ A +LL  M +K  +C                     +A+EL
Sbjct: 453 TITYTTLLTGLCHAERLDAAAELLAGMIQK--DCPLNAVTFNVLVSFFCQKGFVEEAMEL 510

Query: 481 LHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
           +++M +    P+ IT + L + + KD N  E + LL   +S+ 
Sbjct: 511 VNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKG 553



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 121/497 (24%), Positives = 213/497 (42%), Gaps = 91/497 (18%)

Query: 51  TKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLS 110
           T +++ L +  + G     DAL   + M+     P + ++  LL A+     +   + + 
Sbjct: 145 TPIIRGLCDRGRVG-----DALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVL 199

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           + +   G  P+ V+ N+++N  C+   V DA   L R+    F PD+V+   +++GLC  
Sbjct: 200 DEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAA 259

Query: 171 GKFTEASGLFTKFVAFDCRPNVI-------------------------------PNVICY 199
            ++ +   LF + V   C PN +                               PN    
Sbjct: 260 RRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLC 319

Query: 200 ASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE 259
             +I+ +CK G V+       +M   G  PD   Y +++R  C A  WE AK       E
Sbjct: 320 NIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAK-------E 372

Query: 260 LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSS 319
           L  E V  N      C P+ +++ + I  LC+  L+++A +L   M   G    +V Y++
Sbjct: 373 LLPEMVRKN------CPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNA 426

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           L+ G+C+ GR+D A +LF ++    C P+T +Y TL+      E+++ A  L   MI   
Sbjct: 427 LVHGFCVQGRVDSALELFNNLP---CEPNTITYTTLLTGLCHAERLDAAAELLAGMIQ-- 481

Query: 380 VRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
                 C L A                  FN LV   C+   +  A EL  ++  +G  P
Sbjct: 482 ----KDCPLNA----------------VTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTP 521

Query: 440 NVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           N++T+  ++ G+  +   E                 +A+ELLH +  + V  D IT S +
Sbjct: 522 NLITFNTLLDGITKDCNSE-----------------EALELLHGLVSKGVSLDTITYSSV 564

Query: 500 EELLNKDENCHECMNLL 516
            ++L++++   E + +L
Sbjct: 565 VDVLSREDRTEEAIQML 581



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 157/366 (42%), Gaps = 50/366 (13%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSP----DVVTLGCLI 164
           L E  ++ G  PD      L+   C+    SDA     R+LR   +     DV     L+
Sbjct: 61  LVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDA----ARVLRTAEASGAPVDVFAYNTLV 116

Query: 165 RGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224
            G C  G+   A  L            V P+   Y  II GLC  G V     L  DM  
Sbjct: 117 AGYCRYGRLDAARRLIASM-------PVPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQ 169

Query: 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCS 284
           RG  P    Y  L+   C       + G   A   L E    G       C P++++Y  
Sbjct: 170 RGCQPSVVTYTVLLEAVC------KSSGFGEAMNVLDEMRAKG-------CTPNIVTYNV 216

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           IIN +C++  VD AKE+   + S G  PD+V Y++++ G C   R DD + LF  +  + 
Sbjct: 217 IINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKK 276

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL 404
           C+P+  +++ L+  + +   VE A+ +  +M   G  P+                     
Sbjct: 277 CVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNT-------------------- 316

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
             T+ N +++ +CK  R+  A++    +  YG  P+ ++YT ++ GLC  G  E A +LL
Sbjct: 317 --TLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELL 374

Query: 465 PDMEEK 470
           P+M  K
Sbjct: 375 PEMVRK 380



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/415 (24%), Positives = 184/415 (44%), Gaps = 33/415 (7%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           +D    F  M+  +  P   +F+ L+            I + ++++  G  P+    NI+
Sbjct: 263 DDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIV 322

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           +N  CK   V DA+  L  +     +PD ++   ++RGLC  G++  A  L  + V    
Sbjct: 323 INAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMV---- 378

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
           R N  PN + + + I  LC+ G + +   L   M   G       YN+L+  +C      
Sbjct: 379 RKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFC------ 432

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
             +G   +ALEL              C P+ ++Y +++  LC    +D A EL   M  +
Sbjct: 433 -VQGRVDSALELFNNLP---------CEPNTITYTTLLTGLCHAERLDAAAELLAGMIQK 482

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
               + V ++ L+  +C  G +++A +L   +   GC P+  ++NTL++  +K    EEA
Sbjct: 483 DCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEA 542

Query: 369 LSLYGEMISMGVRPDN---SCIL----------EAAELFRTLHNTKFELDLTVFNCLVDG 415
           L L   ++S GV  D    S ++          EA ++   + +      + ++N ++  
Sbjct: 543 LELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFA 602

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           LCK      A + F  +   G  PN  TY ++I GL  EG +++A  +L ++  K
Sbjct: 603 LCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSELYAK 657



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 127/303 (41%), Gaps = 20/303 (6%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           M+     P   +FN+ +  L  K      I L E +   G     V+ N L++ FC    
Sbjct: 377 MVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGR 436

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           V  A      +      P+ +T   L+ GLC   +   A+ L    +  DC  N +    
Sbjct: 437 VDSALELFNNL---PCEPNTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVT--- 490

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            +  ++   C+ GFV +   L   M   G  P+   +N+L+       +      N+  A
Sbjct: 491 -FNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLL-------DGITKDCNSEEA 542

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
           LEL    V+    L      D ++Y S+++ L ++   ++A ++   ++  G+ P V +Y
Sbjct: 543 LELLHGLVSKGVSL------DTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMY 596

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           + ++   C     D A   F  + S GC+P+ S+Y  LI   +    ++EA  +  E+ +
Sbjct: 597 NKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSELYA 656

Query: 378 MGV 380
            GV
Sbjct: 657 KGV 659



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 17/189 (8%)

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           + +D L + A+ L     SRG  PDV + + LI   C  GR  DA ++  + E+ G   D
Sbjct: 50  IARDDLAEAAR-LVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVD 108

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP-------------DNSCILEAAELFR 395
             +YNTL+  Y +  +++ A  L   + SM V P             D   + +A  L  
Sbjct: 109 VFAYNTLVAGYCRYGRLDAARRL---IASMPVPPDAYTYTPIIRGLCDRGRVGDALALLD 165

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            +     +  +  +  L++ +CKS     A  +  ++   G  PN+VTY V+I G+C EG
Sbjct: 166 DMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREG 225

Query: 456 GIEKAYDLL 464
            ++ A ++L
Sbjct: 226 RVDDAKEIL 234



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 108/236 (45%), Gaps = 17/236 (7%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           E  N +   P+ ++   L+   C    +  A   L  +++K    + VT   L+   C +
Sbjct: 442 ELFNNLPCEPNTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQK 501

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G   EA  L  + +   C     PN+I + +++DG+ KD    +   L   +  +G+  D
Sbjct: 502 GFVEEAMELVNQMMEHGC----TPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLD 557

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
              Y+S++ V    ++ ED    T  A+++    ++   ++G+   P V  Y  I+ +LC
Sbjct: 558 TITYSSVVDV----LSRED---RTEEAIQM----LHAVQDMGM--RPKVGMYNKILFALC 604

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           K    D+A + F  M S G +P+   Y  LI+G    G + +AR +   + ++G +
Sbjct: 605 KRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSELYAKGVL 660



 Score = 41.6 bits (96), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 15/152 (9%)

Query: 387 ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTV 446
           + EAA L  T  +     D+ +   L+  LC+  R   A  + +     G   +V  Y  
Sbjct: 55  LAEAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNT 114

Query: 447 MICGLCIEGGIEKAYDLLPDM---------EEKIR------ECLKAIELLHKMAKRYVKP 491
           ++ G C  G ++ A  L+  M            IR          A+ LL  M +R  +P
Sbjct: 115 LVAGYCRYGRLDAARRLIASMPVPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQP 174

Query: 492 DEITVSILEELLNKDENCHECMNLLPSFLSRN 523
             +T ++L E + K     E MN+L    ++ 
Sbjct: 175 SVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKG 206


>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
          Length = 876

 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 121/444 (27%), Positives = 191/444 (43%), Gaps = 75/444 (16%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GLLPD V+ N ++  +CK   ++ A      +L     P+  T   L+ G C  G+  +A
Sbjct: 63  GLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKA 122

Query: 177 SGLFTKFVAFDCRPNVI-------------------------------PNVICYASIIDG 205
             LF       C+ N                                 PNV  +  +I G
Sbjct: 123 CWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISG 182

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
           LCK G V   R+LF  M   G+ P    YN++I  Y          G  + AL++ +E +
Sbjct: 183 LCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGY-------SKLGRMNDALKI-KELM 234

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
             NG     CHPD  +Y ++I  LC D   ++A+EL  +    G  P VV +++LI+GYC
Sbjct: 235 EKNG-----CHPDDWTYNTLIYGLC-DQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYC 288

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP--- 382
           +  + DDA ++   + S  C  D   +  LINS  K ++++EA  L  E+ + G+ P   
Sbjct: 289 MAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVI 348

Query: 383 ------DNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
                 D  C    +  A E+ + +     + +   +N L+ GL K  +L  A  L  K+
Sbjct: 349 TYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKM 408

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPD 492
            + G  PNV+TYT ++ G C E   + A+ L   ME+                   +KPD
Sbjct: 409 QKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQN-----------------GLKPD 451

Query: 493 EITVSILEELLNKDENCHECMNLL 516
           E   ++L + L K     E  + +
Sbjct: 452 EHAYAVLTDALCKAGRAEEAYSFI 475



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 116/438 (26%), Positives = 189/438 (43%), Gaps = 66/438 (15%)

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           S  IL+   C    V  A V    + R   SP+V     LI GLC  G+  +A  LF   
Sbjct: 140 SYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLF--- 196

Query: 184 VAFDCRPN--VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
              D  P   V+P+V+ Y ++I G  K G +N    +   M+  G +PD + YN+LI   
Sbjct: 197 ---DAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGL 253

Query: 242 CCAVNWEDAKGNTSAALE-----------------LHEEFVNG----NGELGVICHPDVL 280
           C     E  +   +A  E                 + E+F +     N  +   C  D+ 
Sbjct: 254 CDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQ 313

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
            +  +INSL K   + +AKEL  ++ + G++P+V+ Y+S+IDGYC  G++D A ++   +
Sbjct: 314 VFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMM 373

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNT 400
           E +GC P+  +YN+L+    K +K+ +A++L  +M   G+ P                  
Sbjct: 374 ERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIP------------------ 415

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
               ++  +  L+ G C      +A+ LF+ + + G +P+   Y V+   LC  G  E+A
Sbjct: 416 ----NVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEA 471

Query: 461 YDL---------------LPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505
           Y                 L D   K      A  L+ +M      PD  T S+L   L K
Sbjct: 472 YSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCK 531

Query: 506 DENCHECMNLLPSFLSRN 523
            +  +E + +L     R 
Sbjct: 532 QKRLNEALPILDQMSLRG 549



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 116/455 (25%), Positives = 188/455 (41%), Gaps = 64/455 (14%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           + +DAL   N M+  +    +  F  L+ +L  K        L   ++  GL+P+ ++  
Sbjct: 292 KFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYT 351

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            +++ +CK   V  A   L  + R    P+  T   L+ GL    K  +A  L TK    
Sbjct: 352 SIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQ-- 409

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             +  +IPNVI Y +++ G C +   +    LF  M+  G+ PD   Y  L    C A  
Sbjct: 410 --KDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGR 467

Query: 247 WEDA-------------------------KGNTSAALELHEEFVNGNGELGVICHPDVLS 281
            E+A                          GNT  A  L E  ++        C PD  +
Sbjct: 468 AEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEG------CTPDSYT 521

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y  ++++LCK   +++A  +   M  RGI   +  Y+ LID     G+ D A++++  + 
Sbjct: 522 YSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMT 581

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------NSC-----IL 388
           S G  P  ++Y   INSY K  ++E+A  L  +M   GV PD        + C     I 
Sbjct: 582 SSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYID 641

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKS-------------WRLRS---AWELFKKL 432
            A    + +     E +   +  L+  L K              W L      W+L +++
Sbjct: 642 RAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERM 701

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            ++G  P V TY+ +I G C  G +E+A  LL  M
Sbjct: 702 VKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHM 736



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 178/401 (44%), Gaps = 41/401 (10%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           TP + +F +L+      + + + + +  ++ +     D      L+N   K   + +A  
Sbjct: 274 TPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKE 333

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
            L  I      P+V+T   +I G C  GK   A  +        C+PN       Y S++
Sbjct: 334 LLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWT----YNSLM 389

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
            GL KD  ++K   L   M+  GI P+   Y +L++  C   +++    N     E+ E+
Sbjct: 390 YGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFD----NAFRLFEMMEQ 445

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
             NG         PD  +Y  + ++LCK     +A+E +  +  +G+    V Y++LIDG
Sbjct: 446 --NG-------LKPDEHAYAVLTDALCK---AGRAEEAYSFIVRKGVALTKVYYTTLIDG 493

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           +   G  D A  L   +  EGC PD+ +Y+ L+++  K +++ EAL +  +M   G++  
Sbjct: 494 FSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIK-- 551

Query: 384 NSCIL-----------------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
             C +                  A  ++  + ++  +   T +   ++  CK  RL  A 
Sbjct: 552 --CTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAE 609

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +L  K+ R G  P+VVTY ++I G    G I++A+  L  M
Sbjct: 610 DLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRM 650



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 89/378 (23%), Positives = 146/378 (38%), Gaps = 55/378 (14%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L ER+   G  PD  + ++L++  CK   +++A   L ++  +     +     LI  + 
Sbjct: 506 LIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEML 565

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
            +GK   A  ++ +  +   +P+       Y   I+  CK+G +     L L M+  G+ 
Sbjct: 566 REGKHDHAKRMYNEMTSSGHKPSATT----YTVFINSYCKEGRLEDAEDLILKMEREGVA 621

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           PD   YN LI          D  G+      +   F      +G  C P+  +YC ++  
Sbjct: 622 PDVVTYNILI----------DGCGHMGY---IDRAFSTLKRMVGASCEPNYWTYCLLLKH 668

Query: 289 LCKDVL----------------VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
           L K  L                +D   +L   M   G+ P V  YSSLI G+C  GR+++
Sbjct: 669 LLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEE 728

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392
           A  L   +  +G  P+   Y  LI      +  E+ALS    M   G +P          
Sbjct: 729 ACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQP---------- 778

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
                        L  +  LV GLC          LF  L   G   + V + ++  GL 
Sbjct: 779 ------------QLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLL 826

Query: 453 IEGGIEKAYDLLPDMEEK 470
             G ++  + +L  ME++
Sbjct: 827 KAGYVDICFQMLSIMEKR 844



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 91/197 (46%), Gaps = 13/197 (6%)

Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
           + SL +  + +    ++  +   G++PD V Y+++I  YC  G +  A + F  +   G 
Sbjct: 40  LRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGL 99

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP-------------DNSCILEAAE 392
            P+T + N L+  Y +  ++ +A  L+  M  MG +              D  C+ +A  
Sbjct: 100 EPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALV 159

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
           LF  +       ++  F  L+ GLCKS R+  A  LF  +P+ G  P+V+TY  MI G  
Sbjct: 160 LFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYS 219

Query: 453 IEGGIEKAYDLLPDMEE 469
             G +  A  +   ME+
Sbjct: 220 KLGRMNDALKIKELMEK 236



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 111/259 (42%), Gaps = 27/259 (10%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVT----LGCLIRGLCMQGK 172
           G+ PD V+ NIL++    M  +  AF  L R++     P+  T    L  L++G     +
Sbjct: 619 GVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVR 678

Query: 173 FTEASGLFTKFVAFDCRPNVI---------PNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
             + SG++   +  D    ++         P V  Y+S+I G CK G + +  +L   M 
Sbjct: 679 SVDTSGMWN-LIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMC 737

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
           G+G+ P+  +Y  LI+  CC   +           E    FV+   E G    P + SY 
Sbjct: 738 GKGLSPNEDIYTLLIKC-CCDTKF----------FEKALSFVSIMSECGF--QPQLESYR 784

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
            ++  LC +   +K K LF D+   G   D V +  L DG    G +D   ++   +E  
Sbjct: 785 LLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQMLSIMEKR 844

Query: 344 GCIPDTSSYNTLINSYSKI 362
            C   + +Y  + N   ++
Sbjct: 845 YCCISSQTYALVTNKMHEV 863


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 138/527 (26%), Positives = 219/527 (41%), Gaps = 81/527 (15%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           +SG VE  +A  F   M      P   ++ +L+  L   +       L + ++   L P+
Sbjct: 164 RSGAVE--EAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPN 221

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V    L++ F +     +AF  +  ++     P+ +T   L+RGLC  G+   AS L  
Sbjct: 222 VVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLK 281

Query: 182 KFVAFDCRPNVI-------------------------------PNVICYASIIDGLCKDG 210
           + V    RP+ I                               PNV  Y+ +I GLC+ G
Sbjct: 282 QMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSG 341

Query: 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGE 270
              K   L  +M  +G+ P+AFVY  LI  YC        +GN S A E+ ++    N  
Sbjct: 342 EPEKASDLLEEMTTKGLKPNAFVYAPLISGYC-------REGNVSLACEIFDKMTKVN-- 392

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
                 PD+  Y S+I  L K   V+++ + F  M+ RG++P+   YS LI GY   G +
Sbjct: 393 ----VLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDL 448

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN------ 384
           + A +L   +   G  P+   Y  L+ SY K + +E+  S +  M+  GV  DN      
Sbjct: 449 ESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGIL 508

Query: 385 ------SCILEAAELFRTLHNTKFE---LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
                 S  +EAA  FR L   +      D+ V++ L+ GLCK+     A+ +  ++ + 
Sbjct: 509 IHNLSSSGNMEAA--FRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKK 566

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKA------------------YDLLPDMEEKIRECLKA 477
           G +PN+V Y  +I GLC  G I  A                  Y  L D   K+ +   A
Sbjct: 567 GVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNA 626

Query: 478 IELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQ 524
             L ++M    + PD    S+L    +   +  + M L+     R  
Sbjct: 627 FYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGH 673



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/410 (27%), Positives = 186/410 (45%), Gaps = 60/410 (14%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L E + T GL P+      L++ +C+   VS A     ++ +    PD+     LI GL 
Sbjct: 349 LLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLS 408

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
             G+  E+    TK+ A      ++PN   Y+ +I G  K+G +     L   M   G+ 
Sbjct: 409 KVGRVEES----TKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLK 464

Query: 229 PDAFVYNSLI----------------------------RVYCCAVNWEDAKGNTSAALEL 260
           P+  +Y  L+                            R+Y   ++   + GN  AA  +
Sbjct: 465 PNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRV 524

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
             E +  NG +     PDV  Y S+I+ LCK    +KA  +  +M  +G+ P++V Y++L
Sbjct: 525 LSE-IEKNGSV-----PDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNAL 578

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           IDG C  G I  AR +F SI ++G +P+  +Y +LI+   K+  +  A  LY EM++ G+
Sbjct: 579 IDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGI 638

Query: 381 RPD------------NSCILEAA-----ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLR 423
            PD            ++  LE A     E+F   H +     ++ FN LVDG CK  +++
Sbjct: 639 TPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHAS-----ISSFNNLVDGFCKRGKMQ 693

Query: 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
              +L   +   G  PN +T   +I GL   G + + + +  ++++K  E
Sbjct: 694 ETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSE 743



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/430 (24%), Positives = 184/430 (42%), Gaps = 65/430 (15%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N L+  L             + +   GL+PD  +   L+N  CK    ++A   L  +
Sbjct: 154 TYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEM 213

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
                 P+VV    LI G   +G   EA  +  + VA      V PN I Y +++ GLCK
Sbjct: 214 SCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVA----AGVQPNKITYDNLVRGLCK 269

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
            G +++  +L   M      PD   YN +I  +    N +DA         L  E  N  
Sbjct: 270 MGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDA-------FRLLSEMENAG 322

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL-- 326
                   P+V +Y  +I+ LC+    +KA +L  +M ++G+ P+  VY+ LI GYC   
Sbjct: 323 ------ISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREG 376

Query: 327 ---------------------------------MGRIDDARKLFVSIESEGCIPDTSSYN 353
                                            +GR++++ K F  ++  G +P+  +Y+
Sbjct: 377 NVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYS 436

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE-------------LFRTLHNT 400
            LI+ Y K   +E A  L   M+  G++P++   ++  E              F+++ + 
Sbjct: 437 GLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQ 496

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
              LD  ++  L+  L  S  + +A+ +  ++ + G  P+V  Y+ +I GLC     EKA
Sbjct: 497 GVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKA 556

Query: 461 YDLLPDMEEK 470
           + +L +M +K
Sbjct: 557 FGILDEMSKK 566



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 150/366 (40%), Gaps = 76/366 (20%)

Query: 167 LCMQGKFTEASGLFTKFV-AFDCRPNVIPNVICYAS------------IIDGLCKDGFVN 213
           +C    F  A+GL  K + A+   P V+ ++    S            ++D   K G V 
Sbjct: 5   MCAGSLFNLANGLLIKMIRAYPSPPVVLASIHRALSDSGHRSPAVLDVLVDTYKKSGRVQ 64

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA-KGNTSAALELHEEFVNGNGELG 272
               + L M+ RG+ P          + CC    +D  + +  A L    EF+ G G   
Sbjct: 65  DAAEVVLMMRDRGLAPS---------IRCCNALLKDLLRADAMALLWKVREFMVGAG--- 112

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
               PDV +Y ++I + CK    D AK++ ++M+ RG   + V Y+ LI G C  G +++
Sbjct: 113 --ISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEE 170

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEK---------------------------- 364
           A      +E  G +PD  +Y  LIN   K  +                            
Sbjct: 171 AFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLID 230

Query: 365 -------VEEALSLYGEMISMGVRP-----DN--------SCILEAAELFRTLHNTKFEL 404
                   +EA  +  EM++ GV+P     DN          +  A+ L + +       
Sbjct: 231 GFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRP 290

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           D   +N +++G  +    + A+ L  ++   G  PNV TY++MI GLC  G  EKA DLL
Sbjct: 291 DTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLL 350

Query: 465 PDMEEK 470
            +M  K
Sbjct: 351 EEMTTK 356



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 159/341 (46%), Gaps = 28/341 (8%)

Query: 106 FICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165
           F  LSE +   G +PD    + L++  CK      AF  L  + +K   P++V    LI 
Sbjct: 522 FRVLSE-IEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALID 580

Query: 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225
           GLC  G  + A  +F   +A      ++PN + Y S+IDG CK G ++    L+ +M   
Sbjct: 581 GLCKSGDISYARNVFNSILA----KGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLAT 636

Query: 226 GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE-FVNGNGELGVICHPDVLSYCS 284
           GI PDAFVY S++   C +       G+   A+ L EE F+ G        H  + S+ +
Sbjct: 637 GITPDAFVY-SVLTTGCSSA------GDLEQAMFLIEEMFLRG--------HASISSFNN 681

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           +++  CK   + +  +L   +  RG++P+ +   ++I G    G++ +   +FV ++ + 
Sbjct: 682 LVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKT 741

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFE- 403
                  +++L      I + +  L +  +MI    +  N   L+ A + R +   K   
Sbjct: 742 SESAARHFSSLF--MDMINQGKIPLDVVDDMIRDHCKEGN---LDKALMLRDVIVAKSAP 796

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP-EPNVVT 443
           +  + +  +VD LC+  +L  A  L K++ + G  +P +V 
Sbjct: 797 MGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGNLQPTLVA 837



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 94/234 (40%), Gaps = 40/234 (17%)

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
            V   L+D Y   GR+ DA ++ + +   G  P     N L+    + + +     +   
Sbjct: 48  AVLDVLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREF 107

Query: 375 MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
           M+  G+ PD                      +  ++ L++  CK     +A ++  ++  
Sbjct: 108 MVGAGISPD----------------------VYTYSTLIEAYCKVREFDTAKKVLVEMRE 145

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLK 476
            G   N VTY V+I GLC  G +E+A+    DME+                  K R   +
Sbjct: 146 RGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNE 205

Query: 477 AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           A  LL +M+   +KP+ +  + L +   ++ N  E   ++   ++   + +K+T
Sbjct: 206 AKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKIT 259


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 112/401 (27%), Positives = 198/401 (49%), Gaps = 30/401 (7%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142
           P P + +FN ++  L  +   V    L  R+  +G  PD V+ N L++ + K   + +  
Sbjct: 195 PAPNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVE 254

Query: 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202
           + +  + +   + DVVT   LI      G   +A   F +      R  V+ NV+  ++ 
Sbjct: 255 LLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMK----RLGVMANVVTLSTF 310

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
           +D  CK+G V +   LF  M+ RG+ P+ F Y SL+   C A   +D       A+ L +
Sbjct: 311 VDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDD-------AIVLLD 363

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
           E V+     G++  P+V++Y  +++ LCK+  V  A ++   M+  G+  + ++Y++LI 
Sbjct: 364 EMVHQ----GLV--PNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIH 417

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
           G+ +    + A  L   ++++G   D S Y TLI    K++K++EA SL  +M   G+RP
Sbjct: 418 GHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRP 477

Query: 383 DN---SCIL----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
           +    + I+          EA  L   + ++  + ++  +  L+DGLCK+  +  A   F
Sbjct: 478 NTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHF 537

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            K+   G +PNV  YT +I G C  G + KA  L+ +M +K
Sbjct: 538 DKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDK 578



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/245 (36%), Positives = 127/245 (51%), Gaps = 19/245 (7%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+V ++  +I+ LCK   + +A+ LF+ MK+ G  PDVV Y+SLIDGY   G +++   L
Sbjct: 197 PNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELL 256

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------- 383
              +   GC  D  +YN LIN +SK   +E+A S +GEM  +GV  +             
Sbjct: 257 VSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCK 316

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
              + EA +LF  +       +   +  LVDG CK+ RL  A  L  ++   G  PNVVT
Sbjct: 317 EGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVT 376

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKM---AKRYVKPDEITVSILE 500
           YTVM+ GLC EG +  A D+L  ME   R  +KA ELL+          K  E  + +L 
Sbjct: 377 YTVMVDGLCKEGKVAVADDVLSLME---RAGVKANELLYTTLIHGHFMNKNSERALDLLN 433

Query: 501 ELLNK 505
           E+ NK
Sbjct: 434 EMKNK 438



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 176/397 (44%), Gaps = 61/397 (15%)

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           + DA  AL R+ +    P+  T   ++  L    +      LF    A        PNV 
Sbjct: 149 LDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFEHLPA--------PNVF 200

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            +  +ID LCK G + + R LF+ MK  G  PD   YNSLI  Y                
Sbjct: 201 TFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGY-----------GKCGE 249

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
           LE  E  V+   + G  C  DV++Y ++IN   K   ++KA   F +MK  G++ +VV  
Sbjct: 250 LEEVELLVSEMRKSG--CAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTL 307

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           S+ +D +C  G + +A KLF  +   G +P+  +Y +L++   K  ++++A+ L  EM+ 
Sbjct: 308 STFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVH 367

Query: 378 MGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
            G+ P                      ++  +  +VDGLCK  ++  A ++   + R G 
Sbjct: 368 QGLVP----------------------NVVTYTVMVDGLCKEGKVAVADDVLSLMERAGV 405

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIE 479
           + N + YT +I G  +    E+A DLL +M+                   K+++  +A  
Sbjct: 406 KANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKS 465

Query: 480 LLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           LLHKM    ++P+ +  + + +   K     E + LL
Sbjct: 466 LLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALL 502



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 117/496 (23%), Positives = 189/496 (38%), Gaps = 110/496 (22%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           EL +A   F  M  M  +P + ++NSL+              L   +   G   D V+ N
Sbjct: 214 ELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYN 273

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+NCF K   +  A+   G + R     +VVTL   +   C +G   EA  LF +    
Sbjct: 274 ALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVR 333

Query: 187 DCRPN-------------------------------VIPNVICYASIIDGLCKDG----- 210
              PN                               ++PNV+ Y  ++DGLCK+G     
Sbjct: 334 GMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVA 393

Query: 211 --------------------------FVNKVRVLFLD----MKGRGIYPDAFVYNSLIRV 240
                                     F+NK     LD    MK +G+  D  +Y +LI  
Sbjct: 394 DDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWG 453

Query: 241 YCCAVNWEDAKG------------NTSAALELHEEFVNGNGELGVIC----------HPD 278
            C     ++AK             NT     + + F     E   +            P+
Sbjct: 454 LCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPN 513

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
           V++YC++I+ LCK   + +A   F  M+  G+ P+V VY++LIDG+C +G +  A  L  
Sbjct: 514 VVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMN 573

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398
            +  +G   D   Y +LI+ + K   ++ A +L  +MI  G+                  
Sbjct: 574 EMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGL------------------ 615

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
               +LDL  + C + G C    ++ A  +  ++   G  P+   Y  +I      G +E
Sbjct: 616 ----QLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQKLGNME 671

Query: 459 KAYDLLPDMEEKIREC 474
           +A  L  +ME  +  C
Sbjct: 672 EASSLQNEMESVLSSC 687


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 113/445 (25%), Positives = 198/445 (44%), Gaps = 58/445 (13%)

Query: 80  HMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVS 139
           H    P   S+  L+ AL   +     + L   + + G+  D V+   L+   C    V 
Sbjct: 108 HPACRPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVD 167

Query: 140 DAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICY 199
            A   +G +      P+VV    L++G C  G++ +   +F +         + P+V+ Y
Sbjct: 168 KAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEM----SEKGIEPDVVMY 223

Query: 200 ASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE 259
             +ID LCK G   K   +   M  RG+ P+   YN LI   C        +G+   A+ 
Sbjct: 224 TGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMC-------KEGSVKEAIG 276

Query: 260 LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM-KSRGII-PDVVVY 317
           + ++      E GV   PDV++Y ++I  L   + +D+A  L  +M + + I+ P+VV +
Sbjct: 277 VLKKM----SEKGV--APDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTF 330

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           +S+I G C +GR+  A ++   +E  GC+ +  +YN LI    ++ KV +A+ L  EM S
Sbjct: 331 NSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTS 390

Query: 378 MGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
           +G+ PD+                        ++ L+ G CK W++  A +L   +   G 
Sbjct: 391 LGLEPDS----------------------FTYSILIKGFCKMWQVDRAEDLLSTMRDRGI 428

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE-----------------KIRECLKAIEL 480
           EP +  Y  ++  +C +G +E+A +L  +M+                  K  +   A EL
Sbjct: 429 EPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKEL 488

Query: 481 LHKMAKRYVKPDEITVSILEELLNK 505
           L  +    + PD +T SI+  +  K
Sbjct: 489 LKSIVDEGLTPDAVTYSIVINMFAK 513



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 171/385 (44%), Gaps = 46/385 (11%)

Query: 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV 215
           D V+   ++  LC +G    A  L  + ++ +  P   PN + Y  ++  LC D   ++ 
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGALL-RAMSLEPHPACRPNAVSYTVLMRALCADRLADQA 134

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
             L   M+  G+  D   Y +LIR  C A            A+EL  E      E G+  
Sbjct: 135 VGLLRSMRSAGVRADVVTYGTLIRGLCDA-------AEVDKAVELMGEMC----ESGI-- 181

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
            P+V+ Y S++   CK    +   ++F++M  +GI PDVV+Y+ LID  C +G+   A  
Sbjct: 182 EPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHG 241

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCIL--- 388
           +   +   G  P+  +YN LIN   K   V+EA+ +  +M   GV PD    N+ I    
Sbjct: 242 VMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLS 301

Query: 389 ------EAAELFRTLHNTK--FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
                 EA  L   +   K   + ++  FN ++ GLC   R+R A+++   +   G   N
Sbjct: 302 DVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVN 361

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILE 500
           +VTY ++I GL                  ++ +  KA+EL+ +M    ++PD  T SIL 
Sbjct: 362 LVTYNLLIGGLL-----------------RVHKVRKAMELMDEMTSLGLEPDSFTYSILI 404

Query: 501 ELLNKDENCHECMNLLPSFLSRNQE 525
           +   K        +LL +   R  E
Sbjct: 405 KGFCKMWQVDRAEDLLSTMRDRGIE 429



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 144/327 (44%), Gaps = 58/327 (17%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL P+ V+ N+L+NC CK   V +A   L ++  K  +PDVVT   LI+GL    +  EA
Sbjct: 250 GLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEA 309

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF------------------------- 211
             L  + V    +  V PNV+ + S+I GLC  G                          
Sbjct: 310 MWLLEEMV--RGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNL 367

Query: 212 -------VNKVRV---LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE-- 259
                  V+KVR    L  +M   G+ PD+F Y+ LI+ +C     + A+   S   +  
Sbjct: 368 LIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRG 427

Query: 260 LHEEFVNGNGELGVICHP-------------------DVLSYCSIINSLCKDVLVDKAKE 300
           +  E  +    L  +C                     DV++Y ++I+  CK   +  AKE
Sbjct: 428 IEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKE 487

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           L   +   G+ PD V YS +I+ +   G ++ A  +   + + G +PD + +++LI  YS
Sbjct: 488 LLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYS 547

Query: 361 KIEKVEEALSLYGEMISMGVRPDNSCI 387
              ++ + L L  EMI+  +  D+  I
Sbjct: 548 TKGEINKVLELIREMITKNIALDSKII 574


>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
          Length = 748

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 125/483 (25%), Positives = 210/483 (43%), Gaps = 47/483 (9%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            + +A   F+ M+   P P + S+++LL   A +  + N   L   + + G++P+    N
Sbjct: 277 RIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFN 336

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           IL+N + +   +  A +    +  K   PD VT   +I  LC  G+  +A   F   V  
Sbjct: 337 ILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDI 396

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                V P+   Y  +I G C  G + K + L  +M  + I P    Y S I      +N
Sbjct: 397 ----GVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSI------IN 446

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
               +G  +   ++ +  V   G+      P+V+++ S++   C    +++A  L   M 
Sbjct: 447 NLFKEGRVAEGKDIMDLMVQ-TGQ-----RPNVVTFNSLMEGYCLVGNMEEAFALLDAMA 500

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           S GI P+  +Y +L+DGYC  GRIDDA  +F  +  +G  P +  YN +++   +  +  
Sbjct: 501 SIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTT 560

Query: 367 EALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLV 413
            A  ++ EMI  G                 N+C  EA  L   L     + D+  FN ++
Sbjct: 561 AAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVI 620

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIR- 472
             + K  R + A ELF  +  YG  P V TY +MI  L  E   E+A +L   +E+  R 
Sbjct: 621 SAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGRA 680

Query: 473 -----------------ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
                            E  KA   L  + +  +  +  T+S+L  L +++  C E + L
Sbjct: 681 PDSRLLNHIVRMLLKKAEVAKASNYLSIIDENNLTLEASTISLLASLFSREGKCREHIKL 740

Query: 516 LPS 518
           LP+
Sbjct: 741 LPA 743



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 107/386 (27%), Positives = 186/386 (48%), Gaps = 44/386 (11%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P   + NIL++C+ +M     A    GR+LR    PDV +   LI G   +G+  +A  L
Sbjct: 120 PTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYEL 179

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F K +      +V P+V+ Y S+IDGLCK   + K   +   M   GI P+   YNSLI 
Sbjct: 180 FYKMI----EQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIY 235

Query: 240 VYCCAVNWEDA----KGNTSAALELHEEFVNGNGELGVICH------------------- 276
            Y  A  W+++    K  +S+ L      VN N  +  +C                    
Sbjct: 236 GYSTAGMWKESVRVFKEMSSSGLI--PCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGP 293

Query: 277 -PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
            P+++SY ++++    +        L   M S+GI+P+   ++ LI+ Y   G +D A  
Sbjct: 294 KPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAML 353

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS---CILE--- 389
           +F  ++++G IPDT ++ T+I+S  +I ++++AL  +  M+ +GV P  +   C+++   
Sbjct: 354 IFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCC 413

Query: 390 -------AAELFRTLHNTKF-ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
                  A EL   + N       +  F+ +++ L K  R+    ++   + + G  PNV
Sbjct: 414 NHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNV 473

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDM 467
           VT+  ++ G C+ G +E+A+ LL  M
Sbjct: 474 VTFNSLMEGYCLVGNMEEAFALLDAM 499



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 45/173 (26%)

Query: 333 ARKLFVSIESEGC------IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC 386
           A +LF  ++   C       P   +YN LI+ Y ++ + E AL+++G ++  G+ PD   
Sbjct: 100 AVELFKRMDRWACPHAAADAPTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPD--- 156

Query: 387 ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTV 446
                              +  +N L+DG  K   +  A+ELF K+      P+VVTY  
Sbjct: 157 -------------------VCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNS 197

Query: 447 MICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           +I GLC                 K +E +K+  +L +M    ++P+  T + L
Sbjct: 198 LIDGLC-----------------KTKEMVKSERVLEQMVDAGIRPNNKTYNSL 233


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 172/386 (44%), Gaps = 39/386 (10%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + + N +L  L      +  +   E   T G   D  +   +++   K   + DA   
Sbjct: 128 PSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVAL 187

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           + +I     +P + T   L+ GLC  G+  EA  L  K V   C P+V+     Y S+ID
Sbjct: 188 MEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVT----YTSLID 243

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           GL K+    +   LF +M  RG+  D   Y +LIR    A       G    A  +++  
Sbjct: 244 GLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQA-------GKIPQASSVYKTM 296

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
            +        C PDV++  ++I+ LCK   +  A  +F  M++RG+ P+ VVYS+LI G 
Sbjct: 297 TSQG------CVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGL 350

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           C   ++D A ++   ++   C PDT +YN LI+   K   VE A + + EM+  G +P  
Sbjct: 351 CKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKP-- 408

Query: 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
                               D+  +N LV G CK+    +A  +F  +      PNVVTY
Sbjct: 409 --------------------DVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTY 448

Query: 445 TVMICGLCIEGGIEKAYDLLPDMEEK 470
             +I GLC    + KA      M+E+
Sbjct: 449 GTLISGLCKRRQLTKASLYFQHMKER 474



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 115/418 (27%), Positives = 186/418 (44%), Gaps = 45/418 (10%)

Query: 47  VEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNF 106
           +   T ++ +L++N K     + DA+     +     TP + ++N+LL  L         
Sbjct: 165 IHTYTAIVDWLAKNKK-----IQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEA 219

Query: 107 ICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166
           I L  ++   G  PD V+   L++   K     +A+     +  +    D V    LIRG
Sbjct: 220 IDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRG 279

Query: 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
           L   GK  +AS ++    +  C    +P+V+  +++IDGLCK G +     +F  M+ RG
Sbjct: 280 LLQAGKIPQASSVYKTMTSQGC----VPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARG 335

Query: 227 IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII 286
           + P+  VY++LI   C A   +        ALE+  +           C PD ++Y  +I
Sbjct: 336 LAPNEVVYSALIHGLCKARKMD-------CALEMLAQMKKA------FCTPDTITYNILI 382

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           + LCK   V+ A+  F +M   G  PDV  Y+ L+ G+C  G  D A  +F  + S  C 
Sbjct: 383 DGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCS 442

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406
           P+  +Y TLI+   K  ++ +A   +  M   G  PD+                      
Sbjct: 443 PNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDS---------------------- 480

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            V++ LVDGLCKS +L     LF ++ R G   N  T T +I  LC    +++A  L 
Sbjct: 481 FVYSSLVDGLCKSGKLEGGCMLFDEMERSGV-ANSQTRTRLIFHLCKANRVDEAVSLF 537



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 115/400 (28%), Positives = 170/400 (42%), Gaps = 57/400 (14%)

Query: 106 FICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165
           F CLS      G      + N L++ F +     +A   L   L   F PDV T   LI 
Sbjct: 45  FQCLSS--PRFGFQHSVHTGNALLDVFARTKRHREAGNLLKNELATTFLPDVETWNVLIT 102

Query: 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225
           G C+  +  EA   F      +    V P++  +  ++ GLCK G V      F      
Sbjct: 103 GYCLAREPEEA---FAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTN 159

Query: 226 GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSI 285
           G   D   Y ++       V+W         A+ L E+ +  NG     C P + +Y ++
Sbjct: 160 GCTIDIHTYTAI-------VDWLAKNKKIQDAVALMEK-ITANG-----CTPTIATYNAL 206

Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
           +N LCK   +++A +L   +   G  PDVV Y+SLIDG     R  +A KLF  +   G 
Sbjct: 207 LNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGL 266

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELD 405
           + DT  Y  LI    +  K+ +A S+Y  M S G  P                      D
Sbjct: 267 VLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVP----------------------D 304

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
           +   + ++DGLCK+ R+ +A  +FK +   G  PN V Y+ +I GLC             
Sbjct: 305 VVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLC------------- 351

Query: 466 DMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505
               K R+   A+E+L +M K +  PD IT +IL + L K
Sbjct: 352 ----KARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCK 387



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 129/287 (44%), Gaps = 52/287 (18%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           + + G +PD V+L+ +++  CK   +  A      +  +  +P+ V    LI GLC   K
Sbjct: 296 MTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARK 355

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
              A  +  +     C P+ I     Y  +IDGLCK G V   R  F +M   G  PD +
Sbjct: 356 MDCALEMLAQMKKAFCTPDTIT----YNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVY 411

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            YN L+  +C A       GNT AA  + ++  + +      C P+V++Y ++I+ LCK 
Sbjct: 412 TYNILVSGFCKA-------GNTDAACGVFDDMSSSH------CSPNVVTYGTLISGLCKR 458

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG------------------------ 328
             + KA   F  MK RG  PD  VYSSL+DG C  G                        
Sbjct: 459 RQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQTRT 518

Query: 329 ----------RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
                     R+D+A  LF +I  EG +P   +YN++I++  K  KV
Sbjct: 519 RLIFHLCKANRVDEAVSLFNAIRKEG-MPHPYAYNSIISTLIKSAKV 564



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 101/245 (41%), Gaps = 33/245 (13%)

Query: 295 VDKAKELFLDMKSR--GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
            D A ELF  + S   G    V   ++L+D +    R  +A  L  +  +   +PD  ++
Sbjct: 38  ADLAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGNLLKNELATTFLPDVETW 97

Query: 353 NTLINSYSKIEKVEEALSLYGEM-ISMGVRPD-------------NSCILEAAELFRTLH 398
           N LI  Y    + EEA ++  EM    GV P              +  +L A + F T  
Sbjct: 98  NVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTT 157

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
                +D+  +  +VD L K+ +++ A  L +K+   G  P + TY  ++ GLC  G +E
Sbjct: 158 TNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLE 217

Query: 459 KAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPS 518
                            +AI+LL K+      PD +T + L + L K++   E   L   
Sbjct: 218 -----------------EAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKE 260

Query: 519 FLSRN 523
              R 
Sbjct: 261 MALRG 265


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 110/404 (27%), Positives = 184/404 (45%), Gaps = 62/404 (15%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ PD V    L++ FCK+  VS A+     + ++  SPD +T   +I GLC  G+  EA
Sbjct: 253 GIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEA 312

Query: 177 SGLFTKFVAFDCRPNVI-------------------------------PNVICYASIIDG 205
             LF + V     P+ +                               PN++ Y ++ DG
Sbjct: 313 DKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADG 372

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF- 264
           LCK G V+    L  +M  +G+  + + YNSL+   C A       GN   A++L ++  
Sbjct: 373 LCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKA-------GNIDQAVKLMKDME 425

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           V G        HPD ++Y +++++ CK   + +A EL   M  R + P VV ++ L++G+
Sbjct: 426 VAG-------FHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGF 478

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           C+ G ++D  KL   +  +G +P+ ++YN+LI  Y     +     +Y  M + GV PD 
Sbjct: 479 CMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDG 538

Query: 385 SC-------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
           +              + EA  L R +    F L ++ +N L+ G  K  +   A ELF++
Sbjct: 539 NTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQ 598

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL 475
           + R G   +   Y +       EG +E   +L    +E I +CL
Sbjct: 599 MRREGLVADREIYNIFADINYDEGKMELTLELC---DEAIEKCL 639



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 179/372 (48%), Gaps = 30/372 (8%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L E +   GL P+  + N ++   CK   V++A   L  ++ +  +PD V    LI G C
Sbjct: 210 LIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFC 269

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
             G  + A  LF +      +  + P+ I Y ++I GLC+ G V +   LF +M  + + 
Sbjct: 270 KLGNVSSAYRLFDEMQ----KRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLE 325

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           PD   Y +LI  YC        +G    A  LH + +    ++G+   P++++Y ++ + 
Sbjct: 326 PDEVTYTALIDGYC-------KEGKMKEAFSLHNQML----QMGLT--PNIVTYTALADG 372

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           LCK   VD A EL  +M  +G+  ++  Y+SL++G C  G ID A KL   +E  G  PD
Sbjct: 373 LCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPD 432

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------NSCILEAAE-LFR 395
             +Y TL+++Y K  ++  A  L  +M+   ++P              S +LE  E L +
Sbjct: 433 AVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLK 492

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            +       + T +N L+   C    +R+  E+++ +   G  P+  TY ++I G C   
Sbjct: 493 WMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKAR 552

Query: 456 GIEKAYDLLPDM 467
            +++A+ L  DM
Sbjct: 553 NMKEAWFLHRDM 564



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 146/300 (48%), Gaps = 53/300 (17%)

Query: 218 LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277
           L  +M+ +G+ P+ + YN +I + C         G  + A  +  E ++     G+   P
Sbjct: 210 LIEEMQIKGLKPNPYTYNGVILLLC-------KTGKVAEAERVLREMISE----GIA--P 256

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           D + Y ++I+  CK   V  A  LF +M+ R I PD + Y+++I G C  GR+ +A KLF
Sbjct: 257 DGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLF 316

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397
             +  +   PD  +Y  LI+ Y K  K++EA SL+ +M+ MG+ P               
Sbjct: 317 HEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTP--------------- 361

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                  ++  +  L DGLCK   + +A EL  ++ R G E N+ TY  ++ GLC  G I
Sbjct: 362 -------NIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNI 414

Query: 458 EKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           ++A  L+ DME                   K RE ++A ELL +M  R ++P  +T ++L
Sbjct: 415 DQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVL 474



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 118/262 (45%), Gaps = 31/262 (11%)

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           +L  +M+ +G+ P+   Y+ +I   C  G++ +A ++   + SEG  PD   Y TLI+ +
Sbjct: 209 KLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGF 268

Query: 360 SKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDL 406
            K+  V  A  L+ EM    + PD                ++EA +LF  +   + E D 
Sbjct: 269 CKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDE 328

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             +  L+DG CK  +++ A+ L  ++ + G  PN+VTYT +  GLC  G ++ A +LL +
Sbjct: 329 VTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHE 388

Query: 467 MEEKIRE------------------CLKAIELLHKMAKRYVKPDEITVSILEELLNKDEN 508
           M  K  E                    +A++L+  M      PD +T + L +   K   
Sbjct: 389 MCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSRE 448

Query: 509 CHECMNLLPSFLSRNQEESKLT 530
                 LL   L R  + + +T
Sbjct: 449 MVRAHELLRQMLDRELQPTVVT 470



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 149/350 (42%), Gaps = 23/350 (6%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           ++G V   D L  F+ M+  +  P   ++ +L+     +        L  ++  +GL P+
Sbjct: 305 QTGRVMEADKL--FHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPN 362

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+   L +  CK   V  A   L  + RK    ++ T   L+ GLC  G   +A  L  
Sbjct: 363 IVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMK 422

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
                       P+ + Y +++D  CK   + +   L   M  R + P    +N L+  +
Sbjct: 423 DMEV----AGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGF 478

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C            S  LE  E+ +    E G++  P+  +Y S+I   C    +    E+
Sbjct: 479 C-----------MSGMLEDGEKLLKWMLEKGIM--PNATTYNSLIKQYCIRNNMRATTEI 525

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           +  M ++G++PD   Y+ LI G+C    + +A  L   +  +G     SSYN LI  + K
Sbjct: 526 YRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYK 585

Query: 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNC 411
            +K  EA  L+ +M   G+  D     E   +F  ++  + +++LT+  C
Sbjct: 586 RKKFLEARELFEQMRREGLVADR----EIYNIFADINYDEGKMELTLELC 631



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 106/237 (44%), Gaps = 46/237 (19%)

Query: 292 DVLVDKAKELFLDMKSRGIIPDV----VVYSSL---IDGYCLMGRIDDARKLFVSIESEG 344
           DV V  A++LF  M + G++  V    +  S L   +DG  +  + +   KL   ++ +G
Sbjct: 159 DVGVSFARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKGEWVLKLIEEMQIKG 218

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL 404
             P+  +YN +I    K  KV EA  +  EMIS G+ PD                     
Sbjct: 219 LKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDG-------------------- 258

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
              ++  L+DG CK   + SA+ LF ++ +    P+ +TYT +ICGLC  G +       
Sbjct: 259 --VIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRV------- 309

Query: 465 PDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
                     ++A +L H+M  + ++PDE+T + L +   K+    E  +L    L 
Sbjct: 310 ----------MEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQ 356


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 119/409 (29%), Positives = 177/409 (43%), Gaps = 44/409 (10%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           KSGE+E  +AL   +    M  +P   +++++L +L  +      + +  R       PD
Sbjct: 161 KSGEIE--EALRVLD---RMGVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCYPD 215

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+  +L++  CK  GV  A      +  K   PDVVT   LI+G C  G+  EA     
Sbjct: 216 VVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLK 275

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           K  ++ C+P+VI + +    I+  LC  G       L   M  +G  P    +N LI   
Sbjct: 276 KLPSYGCQPDVISHNM----ILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFL 331

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C        KG    AL + E  +  +G       P+  S+  +I   C    +D+A E 
Sbjct: 332 C-------QKGLLGKALNVLE-MMPKHGHT-----PNSRSFNPLIQGFCNGKGIDRAIEY 378

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
              M SRG  PD+V Y+ L+   C  G++DDA  +   + S+GC P   SYNT+I+   K
Sbjct: 379 LEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLK 438

Query: 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
           + K E A+ L  EM   G++PD                      L     +V GL +  +
Sbjct: 439 VGKAELAVELLEEMCYKGLKPD----------------------LITCTSVVGGLSREGK 476

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           +R A + F  L R+   PN   Y  +I GLC       A D L DM  K
Sbjct: 477 VREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLADMVAK 525



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 179/400 (44%), Gaps = 52/400 (13%)

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN 213
           SPDV+    LIR  C  G+   AS    + +        + +V  Y  +I G CK G + 
Sbjct: 111 SPDVIACTALIREFCKIGRTKNAS----QIMGILEESGAVIDVTSYNVLISGYCKSGEIE 166

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
           +   +   M   G+ P+A  Y++++   C        +G    A+++         +L  
Sbjct: 167 EALRVLDRM---GVSPNAATYDAVLCSLC-------DRGKLKQAMQVLGR------QLQS 210

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
            C+PDV++   +I++ CK+  V +A +LF +M+++G  PDVV Y+ LI G+C  GR+D+A
Sbjct: 211 KCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEA 270

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP----------- 382
            +    + S GC PD  S+N ++ S     +  +A+ L   M+  G  P           
Sbjct: 271 IRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINF 330

Query: 383 --DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
                 + +A  +   +       +   FN L+ G C    +  A E  + +   G  P+
Sbjct: 331 LCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPD 390

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDMEEK------------IRECLK------AIELLH 482
           +VTY +++  LC +G ++ A  +L  +  K            I   LK      A+ELL 
Sbjct: 391 IVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLE 450

Query: 483 KMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
           +M  + +KPD IT + +   L+++    E M     +L R
Sbjct: 451 EMCYKGLKPDLITCTSVVGGLSREGKVREAMKFF-HYLKR 489



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 143/339 (42%), Gaps = 28/339 (8%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  +  A+  FN M +    P + ++N L+            I   ++L + G  PD +S
Sbjct: 229 ESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVIS 288

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N+++   C      DA   L  +LRK   P VVT   LI  LC +G   +A  +     
Sbjct: 289 HNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMP 348

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
               +    PN   +  +I G C    +++       M  RG YPD   YN L+   C  
Sbjct: 349 ----KHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKD 404

Query: 245 VNWEDA---------KGNTSAALELHEEFVNG-----NGELGV-----ICH----PDVLS 281
              +DA         KG  S +L  +   ++G       EL V     +C+    PD+++
Sbjct: 405 GKVDDAVVILSQLSSKG-CSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLIT 463

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
             S++  L ++  V +A + F  +K   I P+  +Y+S+I G C   +   A      + 
Sbjct: 464 CTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLADMV 523

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           ++GC P  ++Y TLI   +     E+A  L  E+ S G+
Sbjct: 524 AKGCKPTEATYTTLIKGITYEGLAEDASKLSNELYSRGL 562



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 99/215 (46%), Gaps = 46/215 (21%)

Query: 302 FLD-MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           FL+ M ++G  PDV+  ++LI  +C +GR  +A ++   +E  G + D +SYN LI+ Y 
Sbjct: 101 FLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTSYNVLISGYC 160

Query: 361 KIEKVEEALSL-----------------------------------------YGEMISMG 379
           K  ++EEAL +                                         Y ++++  
Sbjct: 161 KSGEIEEALRVLDRMGVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCYPDVVTCT 220

Query: 380 VRPDNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
           V  D +C    + +A +LF  + N   + D+  +N L+ G CK  RL  A    KKLP Y
Sbjct: 221 VLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSY 280

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           G +P+V+++ +++  LC  G    A  LL  M  K
Sbjct: 281 GCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRK 315



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 114/277 (41%), Gaps = 17/277 (6%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DA+     M+     P + +FN L+  L  K      + + E +   G  P+  S N L+
Sbjct: 304 DAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLI 363

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
             FC   G+  A   L  ++ +   PD+VT   L+  LC  GK  +A  + ++  +  C 
Sbjct: 364 QGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCS 423

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
           P++I     Y ++IDGL K G       L  +M  +G+ PD     S+       V    
Sbjct: 424 PSLIS----YNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSV-------VGGLS 472

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
            +G    A++                 P+   Y SII  LCK      A +   DM ++G
Sbjct: 473 REGKVREAMKFFHYLKR------FAIRPNAFIYNSIITGLCKSQQTSLAIDFLADMVAKG 526

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
             P    Y++LI G    G  +DA KL   + S G +
Sbjct: 527 CKPTEATYTTLIKGITYEGLAEDASKLSNELYSRGLV 563



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 61/151 (40%), Gaps = 21/151 (13%)

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
           N  + E +     + N     D+     L+   CK  R ++A ++   L   G   +V +
Sbjct: 92  NGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTS 151

Query: 444 YTVMICGLCIEGGIEKAYDLLPDM------------------EEKIRECLKAIELLHKMA 485
           Y V+I G C  G IE+A  +L  M                    K+++   A+++L +  
Sbjct: 152 YNVLISGYCKSGEIEEALRVLDRMGVSPNAATYDAVLCSLCDRGKLKQ---AMQVLGRQL 208

Query: 486 KRYVKPDEITVSILEELLNKDENCHECMNLL 516
           +    PD +T ++L +   K+    + M L 
Sbjct: 209 QSKCYPDVVTCTVLIDATCKESGVGQAMKLF 239


>gi|414591629|tpg|DAA42200.1| TPA: hypothetical protein ZEAMMB73_531547 [Zea mays]
          Length = 462

 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 121/449 (26%), Positives = 206/449 (45%), Gaps = 67/449 (14%)

Query: 117 GLLPDFVSLNILMNCFCK---MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF 173
           G  PD  S  I++N +     ++ ++D F     +L    +PD+ T   LI+     G  
Sbjct: 24  GQNPDVFSYTIMLNGYATKGCLVDMTDLF---DLMLGDGIAPDIYTFNVLIKAYANCGML 80

Query: 174 TEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233
            +A  +F +      +P+V+     Y ++I  LC+ G ++     F  M  +G+ PD + 
Sbjct: 81  DKAMIIFNEMRDHGVKPHVVT----YMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYA 136

Query: 234 YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDV 293
           Y+ LI+ +C         G+   A EL  E +N    L      D++ + SIIN+LCK  
Sbjct: 137 YHCLIQGFC-------THGSLLKAKELISEIMNNGMRL------DIVFFGSIINNLCKLG 183

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES----------- 342
            V  A+ +F    + G+ PD VVY+ L+DGYCL+G+++ A ++F ++ S           
Sbjct: 184 RVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGEM 243

Query: 343 --EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCI 387
             +G  P T  YN +I+   +  +   A   + EM   G+  +             N C 
Sbjct: 244 LQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCF 303

Query: 388 LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
            EA  LF+ L     ++D+   N ++ G+ ++ R+  A +LF  + R G  P  VTY++M
Sbjct: 304 DEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIM 363

Query: 448 ICGLCIEGGIEKAYDLLPDMEEK------------IRECLKAIEL------LHKMAKRYV 489
           I  L  EG +E+A D+   M+              +RE LK  E+      L K+ +R  
Sbjct: 364 ITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNF 423

Query: 490 KPDEITVSILEELLNKDENCHECMNLLPS 518
             + +T  +L +L +    C E +  LP+
Sbjct: 424 SLEHLTAMLLVDLFSSKGTCREQIRFLPA 452



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 151/352 (42%), Gaps = 39/352 (11%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L D    F+ M+     P + +FN L+ A A        + +   +   G+ P  V+   
Sbjct: 45  LVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMT 104

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++   C++  + DA     +++ +   PD     CLI+G C  G   +A  L ++ +   
Sbjct: 105 VIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNG 164

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            R     +++ + SII+ LCK G V   + +F      G++PDA VYN L+  YC     
Sbjct: 165 MR----LDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKM 220

Query: 248 EDA----KGNTSAALE-----------------LHEEFVNGNGELGVICHPDV------- 279
           E A        SA +E                 L+   ++G  E G      V       
Sbjct: 221 EKALRVFDAMVSAGIEPNVVGEMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTE 280

Query: 280 -------LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
                   +Y  ++  L K+   D+A  LF ++++  +  D++  +++I G     R+++
Sbjct: 281 SGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEE 340

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           A+ LF SI   G +P   +Y+ +I +  K   VEEA  ++  M + G  PD+
Sbjct: 341 AKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDS 392


>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 114/406 (28%), Positives = 186/406 (45%), Gaps = 49/406 (12%)

Query: 114 NTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI-LRKVFSPDVVTLGCLIRGLCMQGK 172
           N +G+ PD V  N L++  CK+    D    L  + +  +  P+ VT  CLI G    G 
Sbjct: 349 NWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGN 408

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
           F  A  LF +         V PNVI   +++DGLCK G V++    F +MKG+G+  +A 
Sbjct: 409 FDRAHELFRQM----NEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAA 464

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            Y +LI  + C VN      N + A++  EE ++        C PD + Y S+I+ LC  
Sbjct: 465 TYTALISAF-CGVN------NINRAMQCFEEMLSSG------CSPDAVVYYSLISGLCIA 511

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             ++ A  +   +K  G   D   Y+ LI G+C   +++   +L   +E  G  PDT +Y
Sbjct: 512 GRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITY 571

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRP-------------DNSCILEAAELFRTLHN 399
           NTLI+   K      A  +  +MI  G+RP                 + E  ++F  + +
Sbjct: 572 NTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCS 631

Query: 400 T-KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
           T K   +  ++N L+D LC++  +  A  L + +      PN  TY  ++ G+  +  + 
Sbjct: 632 TSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGVRDKKMLH 691

Query: 459 KAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLN 504
           KA+                 EL+ +M +   +PD IT+ +L E L+
Sbjct: 692 KAF-----------------ELMDRMVEEACRPDYITMEVLTEWLS 720



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 172/405 (42%), Gaps = 61/405 (15%)

Query: 107 ICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166
           + L  +L   G+ PD   L  L+   C       A+  L  ++R   + D  +   L+  
Sbjct: 231 VGLVAKLGERGVFPDGFKLTQLVGKLCGDQKNGVAWEVLHCVMRLGGAVDAASCNALLTW 290

Query: 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
           L         + L  +      RP+V+     +  +++ LCK   +++   +F  ++G+G
Sbjct: 291 LGRGRDIKRMNELLAEMEKRKIRPSVV----TFGILVNHLCKARRIDEALQVFDRLRGKG 346

Query: 227 ------IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVL 280
                 + PD  ++N+LI   C     ED        L L EE   GN     I  P+ +
Sbjct: 347 GSNWVGVEPDVVLFNTLIDGLCKVGKEEDG-------LSLLEEMKMGN-----INRPNTV 394

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
           +Y  +I+   K    D+A ELF  M   G+ P+V+  ++L+DG C  GR+  A + F  +
Sbjct: 395 TYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEM 454

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNT 400
           + +G   + ++Y  LI+++  +  +  A+  + EM+S G  PD                 
Sbjct: 455 KGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPD----------------- 497

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
                  V+  L+ GLC + R+  A  +  KL   G   +   Y V+I G C +  +E+ 
Sbjct: 498 -----AVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERV 552

Query: 461 YDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505
           Y+LL +MEE                   VKPD IT + L   L K
Sbjct: 553 YELLTEMEET-----------------GVKPDTITYNTLISYLGK 580



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 146/352 (41%), Gaps = 40/352 (11%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L  ++N  G+ P+ ++LN L++  CK   V  A      +  K    +  T   LI   C
Sbjct: 415 LFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFC 474

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
                  A   F + ++  C     P+ + Y S+I GLC  G +N   V+   +K  G  
Sbjct: 475 GVNNINRAMQCFEEMLSSGCS----PDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFS 530

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
            D   YN LI  +C               LE   E +    E GV   PD ++Y ++I+ 
Sbjct: 531 LDRSCYNVLISGFC-----------KKKKLERVYELLTEMEETGV--KPDTITYNTLISY 577

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI-P 347
           L K      A ++   M   G+ P VV Y ++I  YC    +D+  K+F  + S   + P
Sbjct: 578 LGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPP 637

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLT 407
           +T  YN LI++  +   V+ A+SL  +M    VRP+                       T
Sbjct: 638 NTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNT----------------------T 675

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
            +N ++ G+     L  A+EL  ++      P+ +T  V+   L   G IEK
Sbjct: 676 TYNAILKGVRDKKMLHKAFELMDRMVEEACRPDYITMEVLTEWLSAVGEIEK 727



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 132/326 (40%), Gaps = 45/326 (13%)

Query: 74  FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
            F  M      P + + N+L+  L         +     +   GL  +  +   L++ FC
Sbjct: 415 LFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFC 474

Query: 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF--VAFDCRPN 191
            +  ++ A      +L    SPD V    LI GLC+ G+  +AS + +K     F     
Sbjct: 475 GVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSL--- 531

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
              +  CY  +I G CK   + +V  L  +M+  G+ PD   YN+LI       ++    
Sbjct: 532 ---DRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLI-------SYLGKT 581

Query: 252 GNTSAALELHEEFVN-------------------------GNGELGVICH-----PDVLS 281
           G+ + A ++ E+ +                          G    G +C      P+ + 
Sbjct: 582 GDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVI 641

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y  +I++LC++  VD+A  L  DMK + + P+   Y++++ G      +  A +L   + 
Sbjct: 642 YNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMV 701

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEE 367
            E C PD  +   L    S + ++E+
Sbjct: 702 EEACRPDYITMEVLTEWLSAVGEIEK 727


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 166/347 (47%), Gaps = 63/347 (18%)

Query: 146 GRILRKVFSPDVV------------------TLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           GR+L++V  PDV                   T   L+       +  EA  L  +    +
Sbjct: 47  GRVLQQVEDPDVAWTFFQWAGNKPGFQHNAYTCAVLLNAFVKAKRHEEAHRLLKE----E 102

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
             P   PN I Y ++I+G CK G V++   L  +MK RG+  D  ++++LI+  C     
Sbjct: 103 LEPLCFPNEIMYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLC----- 157

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
              KG    ALE  +        +G  C P+V++Y +++N LCK   +D+A ELF DM+ 
Sbjct: 158 --RKGRIDEALEQFK-------SMGEECSPNVITYNTVVNGLCKANRIDEALELFDDMEK 208

Query: 308 R-----GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
           R     G  PDV+ YS++ID  C   R+D A + F  + + GC P+  +Y++LI+   K+
Sbjct: 209 RYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKV 268

Query: 363 EKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRL 422
           ++  E L L   M   G                      F +++  FN ++  L K+   
Sbjct: 269 DRPSECLELLLHMKEKG----------------------FGINIIDFNAMLHALWKNDEQ 306

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
             A + F++L + G +PNVVTY V + GLC  G +++AY +L +M E
Sbjct: 307 EKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVE 353



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 169/354 (47%), Gaps = 44/354 (12%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFS-----PDVVTLGCLIRGLCMQGKFT 174
           P+ ++ N ++N  CK   + +A      + ++  +     PDV++   +I  LC   +  
Sbjct: 178 PNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVD 237

Query: 175 EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVY 234
           +A   F +  A  C     PNV+ Y+S+IDGLCK    ++   L L MK +G   +   +
Sbjct: 238 KAYEYFKRMRAVGC----APNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDF 293

Query: 235 NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294
           N+++        W++       A +  E  +    +      P+V++Y   ++ LCK   
Sbjct: 294 NAMLHAL-----WKN--DEQEKACQFFERLLKSGKK------PNVVTYNVAVHGLCKAGR 340

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           VD+A  + L+M    + PDV+ YSS+IDG+C  GR+D A  +F  +    CIP   ++ T
Sbjct: 341 VDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMT 400

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           L++ +S+ +K  EA  ++ +M++ G  P                       L  +N L+D
Sbjct: 401 LLHGFSEHKKSREAFRVHEDMVNAGFIP----------------------GLQTYNVLMD 438

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
            +C +  + SA E++ K+ R   +P+  TY  +I  LC    +++A + L  ME
Sbjct: 439 CVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVME 492



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 186/395 (47%), Gaps = 43/395 (10%)

Query: 114 NTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF 173
           N  G   +  +  +L+N F K     +A   L   L  +  P+ +    +I G C  G+ 
Sbjct: 68  NKPGFQHNAYTCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTTVINGFCKAGQV 127

Query: 174 TEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233
            +A  L  +         V  +V+ ++++I GLC+ G +++    F  M G    P+   
Sbjct: 128 DQAFELLDEMK----ERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM-GEECSPNVIT 182

Query: 234 YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDV 293
           YN+++   C A   ++       ALEL ++ +    E    C PDV+SY ++I++LCK  
Sbjct: 183 YNTVVNGLCKANRIDE-------ALELFDD-MEKRYEASHGCEPDVISYSTVIDALCKAQ 234

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353
            VDKA E F  M++ G  P+VV YSSLIDG C + R  +  +L + ++ +G   +   +N
Sbjct: 235 RVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFN 294

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLV 413
            ++++  K ++ E+A   +  ++  G +P                      ++  +N  V
Sbjct: 295 AMLHALWKNDEQEKACQFFERLLKSGKKP----------------------NVVTYNVAV 332

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
            GLCK+ R+  A+ +  ++      P+V+TY+ +I G C  G ++KA D+   M   + E
Sbjct: 333 HGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRM--MVHE 390

Query: 474 CLKA----IELLHKMAKRYVKPDEITVSILEELLN 504
           C+      + LLH  ++   K       + E+++N
Sbjct: 391 CIPHPVTFMTLLHGFSEH--KKSREAFRVHEDMVN 423



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/425 (23%), Positives = 178/425 (41%), Gaps = 74/425 (17%)

Query: 78  MIHMQPTPF---MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           ++HM+   F   +  FN++L AL             ERL   G  P+ V+ N+ ++  CK
Sbjct: 278 LLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCK 337

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
              V +A+  L  ++    +PDV+T   +I G C  G+  +A  +FT+ +  +C    IP
Sbjct: 338 AGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHEC----IP 393

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           + + + +++ G  +     +   +  DM   G  P    YN L+   C A + E      
Sbjct: 394 HPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVE------ 447

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
            +ALE++ +      +      PD  +Y  +I  LC+   VD+AKE    M++  ++P+ 
Sbjct: 448 -SALEIYHKMKRKKRQ------PDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNG 500

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP--------------------------- 347
            +  +L++  C  G +D+A  +  ++   GC P                           
Sbjct: 501 AICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAASKLLRS 560

Query: 348 -----DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF 402
                D ++Y+  +    K  K +EA+ +  +M+  GVRPD                   
Sbjct: 561 PGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEG----------------- 603

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
                 +  ++  LC   R+ SA   F+K+   G  P +VTYT++I   C     ++A+ 
Sbjct: 604 -----TYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADEAFR 658

Query: 463 LLPDM 467
           +   M
Sbjct: 659 IFEAM 663



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 140/337 (41%), Gaps = 31/337 (9%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G ++  D + F   M+H +  P   +F +LL   +  K       + E +   G +P 
Sbjct: 372 KAGRMDKADDV-FTRMMVH-ECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPG 429

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             + N+LM+C C    V  A     ++ RK   PD  T   LI+ LC   +  EA     
Sbjct: 430 LQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLD 489

Query: 182 KFVAFDCRPNVIPN-VICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
              A     NV+PN  IC+A +++ LCK G V++   +  ++   G  P    +  L+  
Sbjct: 490 VMEA----DNVVPNGAICHA-LVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEE 544

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
                 WE A     + L     FV            D  +Y   +  +CK    D+A E
Sbjct: 545 LYLRKKWEAA-----SKLLRSPGFV-----------ADAATYSLCVAEICKAGKPDEAVE 588

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           +   M  +G+ PD   Y +++   C + R++ A   F  + S GC P   +Y  LI    
Sbjct: 589 VIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLVTYTLLIGEAC 648

Query: 361 KIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397
             +  +EA  ++  M++ G  P        A+  RTL
Sbjct: 649 SADMADEAFRIFEAMVAAGFTPQ-------AQTMRTL 678


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 120/419 (28%), Positives = 182/419 (43%), Gaps = 66/419 (15%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G L + VS   L++ FC+   V +A     ++      P V T   +I  LC  G+ TEA
Sbjct: 269 GCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEA 328

Query: 177 SGLFTKFVAFDCRPNV-------------------------------IPNVICYASIIDG 205
             +F +     C+PNV                               IP+V+ Y ++IDG
Sbjct: 329 LNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDG 388

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE--LHEE 263
            CK G       +   M+     P+A  YN LI  +C   N   A       LE  L   
Sbjct: 389 YCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPN 448

Query: 264 FVNGN---------GELGVICH-----------PDVLSYCSIINSLCKDVLVDKAKELFL 303
            V  N         G+LG               PD  +Y   I++LCK  LV++A+ LF 
Sbjct: 449 VVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFE 508

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            +K +GI  + V+YS+LIDGYC +G++ D R L   + S GC+P++ +YN+LI+ Y K +
Sbjct: 509 SLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEK 568

Query: 364 KVEEALSLYGEMISMGVRP--DNSCIL-----------EAAELFRTLHNTKFELDLTVFN 410
             +EA  L   MI   + P  D   IL           +A ++F  + +T    D+ ++ 
Sbjct: 569 NFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYT 628

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
             +   C   RL+ A  L  K+   G  P+ + YT+ I      G I+ A+ +L  M E
Sbjct: 629 AFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHE 687



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 164/351 (46%), Gaps = 39/351 (11%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+  +LN ++N +CK+  V +A + + +I++   S D  T   LI G C       A+ +
Sbjct: 202 PNIFTLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAI 261

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F       C    + N + Y ++I G C+   V++   LF  M     +P    Y  +I 
Sbjct: 262 FLSMPNKGC----LRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIF 317

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C         G  + AL + +E    +      C P+V +Y  +I SLC+D   D AK
Sbjct: 318 ALC-------QLGRKTEALNMFKEMTEKH------CQPNVHTYTVLICSLCEDSNFDDAK 364

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           ++   M  +G+IP VV Y++LIDGYC  G    A ++   +ES  C P+  +YN LI  +
Sbjct: 365 KILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGF 424

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            + + + +A+SL  +M+   ++P                      ++  +N L+ G CK 
Sbjct: 425 CRGKNIHKAMSLLHKMLERKLQP----------------------NVVTYNILIHGQCKE 462

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
             L SA++L   +   G  P+  TY+V I  LC  G +E+A  L   ++EK
Sbjct: 463 GDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEK 513



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 120/402 (29%), Positives = 177/402 (44%), Gaps = 40/402 (9%)

Query: 84  TPFMPSFNSL-LGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142
           +P   ++N L LG   GK  +     L + L    L P+ V+ NIL++  CK   +  A+
Sbjct: 411 SPNARTYNELILGFCRGKNIHKAMSLLHKMLER-KLQPNVVTYNILIHGQCKEGDLGSAY 469

Query: 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202
             L  +      PD  T    I  LC +G   EA  LF           +  N + Y+++
Sbjct: 470 KLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLK----EKGIKANEVIYSTL 525

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
           IDG CK G V+  R L   M   G  P++  YNSLI  YC   N+++A+      ++   
Sbjct: 526 IDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDI 585

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
           E             P   +Y  +I++L KD   D+A ++F  M S G  PDV +Y++ I 
Sbjct: 586 E-------------PAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIH 632

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
            YC  GR+ DA  L   + ++G +PDT  Y   I++Y +   ++ A  +   M  +G  P
Sbjct: 633 AYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEP 692

Query: 383 D---NSCILEAAELFRTLHNTK-------FELDLTVFNCLVDGLCKSWRLRSAWE----L 428
                SC      L + L N K        EL         +     WR R  +E    L
Sbjct: 693 SYYTYSC------LIKHLSNAKPKEVSSSSELSDLSSGVASNDFSNCWR-RVDYEFTLDL 745

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           F K+  +G  PN  TY   I GLC  G +E A+ L   M+EK
Sbjct: 746 FGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEK 787



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 146/315 (46%), Gaps = 43/315 (13%)

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
           CY  ++  L +   +++++ ++L+M    + P+ F  N+++  YC         GN   A
Sbjct: 171 CYNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTMVNGYC-------KLGNVVEA 223

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
               E +V+   + G+    D  +Y S+I   C++  VD A  +FL M ++G + + V Y
Sbjct: 224 ----ELYVSKIVQAGL--SLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSY 277

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           ++LI G+C   R+D+A KLF  +  + C P   +Y  +I +  ++ +  EAL+++ EM  
Sbjct: 278 TNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTE 337

Query: 378 MGVRP-------------DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
              +P             ++S   +A ++   +        +  +N L+DG CK     S
Sbjct: 338 KHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSAS 397

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKM 484
           A E+   +      PN  TY  +I G C    I                  KA+ LLHKM
Sbjct: 398 ALEILSLMESNNCSPNARTYNELILGFCRGKNIH-----------------KAMSLLHKM 440

Query: 485 AKRYVKPDEITVSIL 499
            +R ++P+ +T +IL
Sbjct: 441 LERKLQPNVVTYNIL 455



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 125/291 (42%), Gaps = 26/291 (8%)

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
           V PN+    ++++G CK G V +  +    +   G+  D F Y SLI  YC         
Sbjct: 200 VTPNIFTLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYC-------RN 252

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
            N  AA  +     N        C  + +SY ++I+  C+   VD+A +LF  M      
Sbjct: 253 KNVDAANAIFLSMPNKG------CLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCW 306

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           P V  Y+ +I   C +GR  +A  +F  +  + C P+  +Y  LI S  +    ++A  +
Sbjct: 307 PTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKI 366

Query: 372 YGEMISMGVRP---------DNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
              M+  G+ P         D  C       A E+   + +     +   +N L+ G C+
Sbjct: 367 LNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCR 426

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
              +  A  L  K+     +PNVVTY ++I G C EG +  AY LL  M E
Sbjct: 427 GKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNE 477



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 158/407 (38%), Gaps = 68/407 (16%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L E L   G+  + V  + L++ +CK+  VSD    L ++L     P+ +T   LI G C
Sbjct: 506 LFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYC 565

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
            +  F EA  L    +  D    + P    Y  +ID L KD   ++   +F  M   G +
Sbjct: 566 KEKNFKEARLLVDIMIKRD----IEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSH 621

Query: 229 PDAFVYNSLIRVYCCAVNWEDA-----KGNTSAALE---LHEEFVNGNGELGVI------ 274
           PD F+Y + I  YC     +DA     K N    +    L+  F++  G  G I      
Sbjct: 622 PDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGI 681

Query: 275 --------CHPDVLSYCSIINSLC-----------------------------KDVLVDK 297
                   C P   +Y  +I  L                              + V  + 
Sbjct: 682 LKRMHEVGCEPSYYTYSCLIKHLSNAKPKEVSSSSELSDLSSGVASNDFSNCWRRVDYEF 741

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
             +LF  M   G  P+   Y   I G C +G ++ A +LF  ++ +G  P+   YN+L+ 
Sbjct: 742 TLDLFGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLG 801

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPD-NSCIL------------EAAELFRTLHNTKFEL 404
              ++    EA+     MI     P  +SC L            +A  +F +    ++  
Sbjct: 802 CSCQLGLYGEAIRWLDIMIENRHLPHLDSCKLLLCGLYDEGNDEKAKRVFCSFLQCEYNY 861

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
           D  V+  L+DGL K        +LF  +   G + +  TY+++I G 
Sbjct: 862 DEMVWKVLIDGLLKKGLSDKCSDLFGIMETQGCQIHPKTYSMLIEGF 908



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 121/272 (44%), Gaps = 40/272 (14%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P++ +  +++N  CK   V +A+     +   G+  D   Y+SLI GYC    +D A  +
Sbjct: 202 PNIFTLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAI 261

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
           F+S+ ++GC+ +  SY  LI+ + +  +V+EAL L+ +M      P              
Sbjct: 262 FLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPT------------- 308

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
                    +  +  ++  LC+  R   A  +FK++     +PNV TYTV+IC LC +  
Sbjct: 309 ---------VRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSN 359

Query: 457 IEKAYDLLPDMEEK-------------IRECLK-----AIELLHKMAKRYVKPDEITVSI 498
            + A  +L  M EK                C K     A+E+L  M      P+  T + 
Sbjct: 360 FDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNE 419

Query: 499 LEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           L     + +N H+ M+LL   L R  + + +T
Sbjct: 420 LILGFCRGKNIHKAMSLLHKMLERKLQPNVVT 451



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 122/330 (36%), Gaps = 48/330 (14%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E + A   F+ M+     P +  + + + A        +   L  ++N  G++PD +   
Sbjct: 604 EFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYT 663

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGL------------------- 167
           + ++ + +   +  AF  L R+      P   T  CLI+ L                   
Sbjct: 664 LFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEVSSSSELSDLSS 723

Query: 168 ---------CMQGKFTEAS-GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRV 217
                    C +    E +  LF K     C PN       Y   I GLCK G +     
Sbjct: 724 GVASNDFSNCWRRVDYEFTLDLFGKMAEHGCAPNANT----YGKFITGLCKVGCLEVAHR 779

Query: 218 LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277
           LF  MK +G  P+  +YNSL+   C               L L+ E +     +    H 
Sbjct: 780 LFDHMKEKGQSPNEDIYNSLLGCSC--------------QLGLYGEAIRWLDIMIENRHL 825

Query: 278 DVLSYCSIINSLCKDVLVD-KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
             L  C ++     D   D KAK +F          D +V+  LIDG    G  D    L
Sbjct: 826 PHLDSCKLLLCGLYDEGNDEKAKRVFCSFLQCEYNYDEMVWKVLIDGLLKKGLSDKCSDL 885

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           F  +E++GC     +Y+ LI  +  I++++
Sbjct: 886 FGIMETQGCQIHPKTYSMLIEGFDGIQEID 915


>gi|414871694|tpg|DAA50251.1| TPA: hypothetical protein ZEAMMB73_705675 [Zea mays]
          Length = 1161

 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 112/453 (24%), Positives = 203/453 (44%), Gaps = 76/453 (16%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N++L     K  +   +C+ E +    +  D  + NI+++  C++   + AF+ L R+
Sbjct: 262 TYNTILHWYVKKGRFKAALCVLEDMERDSVQADVYTYNIMIDKLCRIKRSTRAFLLLKRM 321

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
            +   +PD  T   LI G   +GK   A  +F   +    R N++P+V  Y ++IDG C+
Sbjct: 322 RKDDLTPDECTYNTLINGFFREGKINHARYVFNHML----RQNLVPSVATYTTMIDGYCR 377

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC-------CAVNWEDAKG-NTSAALEL 260
           +  ++K   +  +M+  G+ P    Y++L+  YC            ED K    +    +
Sbjct: 378 NRRIDKALSILSEMQITGVMPSELTYSALLNGYCKVSMLGPAIYLMEDLKSRGITINKTM 437

Query: 261 HEEFVNGNGELGVICH--------------PDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
               ++G  ++G I                PDV++Y ++IN +C+   + + KE+   M+
Sbjct: 438 RTILIDGFCQVGEISKAKQILKSMFEDGIDPDVITYSALINGMCRMAKMHETKEILSRMQ 497

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP------------------- 347
             GI+P+ V+Y++LI  YC  G + +A K FV I   G +                    
Sbjct: 498 KSGILPNDVLYTTLICYYCKAGYVKEALKHFVDIYRRGLVANPVIHNALLHAFYREGMIT 557

Query: 348 ----------------DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC----- 386
                           D+ S+N +I+SY     +  A S+Y +M+  G  P N C     
Sbjct: 558 EAEHFRQYMSRMNISFDSVSFNRIIDSYCHRGNIVGAFSVYDDMVRYGYSP-NVCTYQNL 616

Query: 387 ---------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
                    +++A +    L +  F +D   FN L+ G+C+   L  A +L +K+ +   
Sbjct: 617 LRGLCQGGHLVQARQFMSCLLDIPFAIDEKTFNALLLGICRYGTLDEALDLCEKMIKNNC 676

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            P++ TYT+++ G C +G I  A  +L  M EK
Sbjct: 677 LPDIHTYTILLSGFCRKGKILPALVILQMMLEK 709



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 103/425 (24%), Positives = 189/425 (44%), Gaps = 53/425 (12%)

Query: 71   ALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
            AL     M+     P   ++  LL  L   G+    +++   E +   GL  D ++ N L
Sbjct: 699  ALVILQMMLEKGVVPDTVAYTCLLNGLINEGQVKAASYV-FHEIICKEGLYADCIAYNSL 757

Query: 129  MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
            MN + K   V+     +  + +    P+  +   L+ G   +G+F+++  L+   V    
Sbjct: 758  MNGYLKSRNVNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMV---- 813

Query: 189  RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD-MKGRGIYPDAFVYNSLIRVYCCAVNW 247
            R  + P+ + Y  +I GL + G ++ + V FL+ M   GI+PD  V++ LI  +      
Sbjct: 814  RKGIRPDNVTYRLLILGLSECGLID-IAVKFLEKMVLEGIFPDRLVFDILITAFSEKSKM 872

Query: 248  EDAKGNTSAALELH--------EEFVNGNGELGVICH--------------PDVLSYCSI 285
             +A    +    LH           +NG    G + H              P+   Y ++
Sbjct: 873  HNALQVFNCMKWLHMSPSSKTFSAMINGLIRKGYLDHSHKVLHEMLQVGLQPNHTHYIAL 932

Query: 286  INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
            +N+ C+   +D+A  L  +MK+ GI+P  V  SS+I G C  G++++A  +F S+   G 
Sbjct: 933  VNAKCRVGEIDRAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGKLEEAVIVFSSMMRSGM 992

Query: 346  IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELD 405
            +P  +++ TL++S  K  K+ +AL                       L R +   +  +D
Sbjct: 993  VPTVATFTTLMHSLCKESKIADAL----------------------HLKRLMELCRLRVD 1030

Query: 406  LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
            +  +N L+ GLCK   +  A +L+ ++   G  PN+ TY  +   +   G ++   +LL 
Sbjct: 1031 VVSYNVLITGLCKDKHISDALDLYGEMKSKGLWPNITTYITLTGAMYSTGRVQNGEELLE 1090

Query: 466  DMEEK 470
            D+EE+
Sbjct: 1091 DIEER 1095



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 162/361 (44%), Gaps = 31/361 (8%)

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           VS N ++N   +       ++ L   L + F   V T   L+  LC  G+F +A  +  K
Sbjct: 192 VSCNTILNALVEEGESKHVWLFLRESLARKFPLGVTTCNILLNSLCTNGEFRKAEDMLQK 251

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
             +  C    I N + Y +I+    K G       +  DM+   +  D + YN +I   C
Sbjct: 252 MKS--CH---ISNSVTYNTILHWYVKKGRFKAALCVLEDMERDSVQADVYTYNIMIDKLC 306

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
                   K +T A L L     +          PD  +Y ++IN   ++  ++ A+ +F
Sbjct: 307 ------RIKRSTRAFLLLKRMRKDD-------LTPDECTYNTLINGFFREGKINHARYVF 353

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
             M  + ++P V  Y+++IDGYC   RID A  +   ++  G +P   +Y+ L+N Y K+
Sbjct: 354 NHMLRQNLVPSVATYTTMIDGYCRNRRIDKALSILSEMQITGVMPSELTYSALLNGYCKV 413

Query: 363 EKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDLTVF 409
             +  A+ L  ++ S G+  + +              I +A ++ +++     + D+  +
Sbjct: 414 SMLGPAIYLMEDLKSRGITINKTMRTILIDGFCQVGEISKAKQILKSMFEDGIDPDVITY 473

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           + L++G+C+  ++    E+  ++ + G  PN V YT +IC  C  G +++A     D+  
Sbjct: 474 SALINGMCRMAKMHETKEILSRMQKSGILPNDVLYTTLICYYCKAGYVKEALKHFVDIYR 533

Query: 470 K 470
           +
Sbjct: 534 R 534



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 117/541 (21%), Positives = 218/541 (40%), Gaps = 81/541 (14%)

Query: 39  LHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPS---FNSLLG 95
           L  N V +V   T ++     N +     ++ AL   +    MQ T  MPS   +++LL 
Sbjct: 357 LRQNLVPSVATYTTMIDGYCRNRR-----IDKALSILS---EMQITGVMPSELTYSALLN 408

Query: 96  ALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSP 155
                      I L E L + G+  +     IL++ FC++  +S A   L  +      P
Sbjct: 409 GYCKVSMLGPAIYLMEDLKSRGITINKTMRTILIDGFCQVGEISKAKQILKSMFEDGIDP 468

Query: 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV 215
           DV+T   LI G+C   K  E   + ++      +  ++PN + Y ++I   CK G+V + 
Sbjct: 469 DVITYSALINGMCRMAKMHETKEILSRMQ----KSGILPNDVLYTTLICYYCKAGYVKEA 524

Query: 216 RVLFLDMKGRGIYPDAFVYNSLI---------------RVYCCAVNWE----------DA 250
              F+D+  RG+  +  ++N+L+               R Y   +N            D+
Sbjct: 525 LKHFVDIYRRGLVANPVIHNALLHAFYREGMITEAEHFRQYMSRMNISFDSVSFNRIIDS 584

Query: 251 ---KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
              +GN   A  ++++ V           P+V +Y +++  LC+   + +A++    +  
Sbjct: 585 YCHRGNIVGAFSVYDDMVRYGYS------PNVCTYQNLLRGLCQGGHLVQARQFMSCLLD 638

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
                D   +++L+ G C  G +D+A  L   +    C+PD  +Y  L++ + +  K+  
Sbjct: 639 IPFAIDEKTFNALLLGICRYGTLDEALDLCEKMIKNNCLPDIHTYTILLSGFCRKGKILP 698

Query: 368 ALSLYGEMISMGVRPDN---SCILE----------AAELFRTLH-NTKFELDLTVFNCLV 413
           AL +   M+  GV PD    +C+L           A+ +F  +        D   +N L+
Sbjct: 699 ALVILQMMLEKGVVPDTVAYTCLLNGLINEGQVKAASYVFHEIICKEGLYADCIAYNSLM 758

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK--- 470
           +G  KS  + +   +   + +    PN  +Y +++ G    G   K+  L   M  K   
Sbjct: 759 NGYLKSRNVNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIR 818

Query: 471 ------------IRECLK---AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
                       + EC     A++ L KM    + PD +   IL    ++    H  + +
Sbjct: 819 PDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDRLVFDILITAFSEKSKMHNALQV 878

Query: 516 L 516
            
Sbjct: 879 F 879



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 125/312 (40%), Gaps = 44/312 (14%)

Query: 67   ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            + + +L  + YM+     P   ++  L+  L+        +   E++   G+ PD +  +
Sbjct: 801  QFSKSLYLYKYMVRKGIRPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDRLVFD 860

Query: 127  ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            IL+  F +   + +A      +     SP   T   +I GL  +G    +  +  + +  
Sbjct: 861  ILITAFSEKSKMHNALQVFNCMKWLHMSPSSKTFSAMINGLIRKGYLDHSHKVLHEMLQV 920

Query: 187  DCRPN-------------------------------VIPNVICYASIIDGLCKDGFVNKV 215
              +PN                               ++P  +  +SII GLC+ G + + 
Sbjct: 921  GLQPNHTHYIALVNAKCRVGEIDRAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGKLEEA 980

Query: 216  RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
             ++F  M   G+ P    + +L+   C      DA         LH + +     L V  
Sbjct: 981  VIVFSSMMRSGMVPTVATFTTLMHSLCKESKIADA---------LHLKRLMELCRLRV-- 1029

Query: 276  HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
              DV+SY  +I  LCKD  +  A +L+ +MKS+G+ P++  Y +L       GR+ +  +
Sbjct: 1030 --DVVSYNVLITGLCKDKHISDALDLYGEMKSKGLWPNITTYITLTGAMYSTGRVQNGEE 1087

Query: 336  LFVSIESEGCIP 347
            L   IE  G IP
Sbjct: 1088 LLEDIEERGLIP 1099



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 119/285 (41%), Gaps = 37/285 (12%)

Query: 277 PDVLSYCSII-NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
           P  ++ C+I+ NSLC +    KA+++   MKS  I  + V Y++++  Y   GR   A  
Sbjct: 223 PLGVTTCNILLNSLCTNGEFRKAEDMLQKMKSCHI-SNSVTYNTILHWYVKKGRFKAALC 281

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC--------- 386
           +   +E +    D  +YN +I+   +I++   A  L   M    + PD            
Sbjct: 282 VLEDMERDSVQADVYTYNIMIDKLCRIKRSTRAFLLLKRMRKDDLTPDECTYNTLINGFF 341

Query: 387 ----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
               I  A  +F  +        +  +  ++DG C++ R+  A  +  ++   G  P+ +
Sbjct: 342 REGKINHARYVFNHMLRQNLVPSVATYTTMIDGYCRNRRIDKALSILSEMQITGVMPSEL 401

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEEK------------------IRECLKAIELLHKM 484
           TY+ ++ G C    +  A  L+ D++ +                  + E  KA ++L  M
Sbjct: 402 TYSALLNGYCKVSMLGPAIYLMEDLKSRGITINKTMRTILIDGFCQVGEISKAKQILKSM 461

Query: 485 AKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKL 529
            +  + PD IT S L   + +    HE   +    LSR Q+   L
Sbjct: 462 FEDGIDPDVITYSALINGMCRMAKMHETKEI----LSRMQKSGIL 502


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 108/365 (29%), Positives = 163/365 (44%), Gaps = 42/365 (11%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L E     G+ P     N  ++  CK   V +A   +  +      PDVVT   LI GLC
Sbjct: 41  LREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLC 100

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
             G+  EA  +  +      R     N++ Y ++I+GL   G   +     L M+G    
Sbjct: 101 KAGRLDEAQQVLDEME----RSGFAANLVTYNTLINGLSSAGRSGEA---VLVMQGMTTT 153

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           PD   YN++I  +C         G    A    EE     G     C PD  +Y  +IN 
Sbjct: 154 PDTQTYNAIIHGFC-------KSGEIDRAYGFLEEMKQRAG-----CSPDTFTYSILING 201

Query: 289 LCKDVLVDKAKELFLDMKSR-GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
           LCK   + KA EL  +M  R      VV +++L+DGYC    +D AR+L  S+   GC P
Sbjct: 202 LCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAP 261

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLT 407
           D  +Y+T+I+   +   V++  +L  +M+S G +P                      D+ 
Sbjct: 262 DVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKP----------------------DVV 299

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            +  LV GLCK+ ++  A  L K++   G  PN VTY+++  GLC    ++ A DLL  +
Sbjct: 300 TYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSI 359

Query: 468 EEKIR 472
            +K R
Sbjct: 360 RDKGR 364



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 156/369 (42%), Gaps = 44/369 (11%)

Query: 81  MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSD 140
           M PTP M  +N  + AL         + + + +      PD V+ N L+   CK   + +
Sbjct: 50  MAPTPSM--YNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDE 107

Query: 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200
           A   L  + R  F+ ++VT   LI GL   G+  EA  +              P+   Y 
Sbjct: 108 AQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGM-------TTTPDTQTYN 160

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGR-GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE 259
           +II G CK G +++      +MK R G  PD F Y+ LI   C + N   A        E
Sbjct: 161 AIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKAD-------E 213

Query: 260 LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSS 319
           L +E +         C   V+++ ++++  CK   +D+A+EL   M   G  PDVV YS+
Sbjct: 214 LLQEMIGRKD-----CCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYST 268

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           +IDG C  G +D    L   + S GC PD  +Y  L+    K  K+ EA  L   M+  G
Sbjct: 269 IIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDG 328

Query: 380 VRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
             P+                         ++ + DGLCK  +L  A +L   +   G   
Sbjct: 329 CTPNA----------------------VTYSLVFDGLCKIDKLDMANDLLTSIRDKGRVT 366

Query: 440 NVVTYTVMI 448
           +VV +  ++
Sbjct: 367 DVVAFETLL 375



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 145/328 (44%), Gaps = 46/328 (14%)

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           L+R  C+ G+   A  L  +    + +P + P    Y   +  LCK G V +   +  +M
Sbjct: 24  LVRAHCLAGELQAAMDLLREM---EQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNM 80

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDA--------KGNTSAALELHEEFVNG------N 268
           K     PD   +N+LI   C A   ++A        +   +A L  +   +NG      +
Sbjct: 81  KDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRS 140

Query: 269 GEL-----GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR-GIIPDVVVYSSLID 322
           GE      G+   PD  +Y +II+  CK   +D+A     +MK R G  PD   YS LI+
Sbjct: 141 GEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILIN 200

Query: 323 GYCLMGRIDDARKLFVS-IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
           G C    +  A +L    I  + C     ++NTL++ Y K + ++ A  L   M+  G  
Sbjct: 201 GLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCA 260

Query: 382 PDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
           PD                      +  ++ ++DGLC+   +   + L +K+   G +P+V
Sbjct: 261 PD----------------------VVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDV 298

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           VTYTV++ GLC  G + +A  L+  M E
Sbjct: 299 VTYTVLVTGLCKAGKMVEACRLVKRMLE 326



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 126/275 (45%), Gaps = 22/275 (8%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N+L+  L+        + + + + T    PD  + N +++ FCK   +  A+  L  +
Sbjct: 126 TYNTLINGLSSAGRSGEAVLVMQGMTTT---PDTQTYNAIIHGFCKSGEIDRAYGFLEEM 182

Query: 149 LRKVF-SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207
            ++   SPD  T   LI GLC      +A  L  + +    R +   +V+ + +++DG C
Sbjct: 183 KQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIG---RKDCCASVVAFNTLVDGYC 239

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC-CAVNWEDAKGNTSAALELHEEFVN 266
           K   +++ R L   M   G  PD   Y+++I   C C        G+      L E+ V+
Sbjct: 240 KAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRC--------GDVDKGFALLEKMVS 291

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
                   C PDV++Y  ++  LCK   + +A  L   M   G  P+ V YS + DG C 
Sbjct: 292 RG------CKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCK 345

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           + ++D A  L  SI  +G + D  ++ TL+ S  K
Sbjct: 346 IDKLDMANDLLTSIRDKGRVTDVVAFETLLLSVKK 380



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 139/314 (44%), Gaps = 57/314 (18%)

Query: 230 DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSL 289
           D + Y  L+R +C A       G   AA++L  E      + G+   P + ++   +++L
Sbjct: 17  DNYTYFVLVRAHCLA-------GELQAAMDLLREM---EQQPGMAPTPSMYNF--FVHAL 64

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
           CK   V +A E+  +MK     PDVV +++LI G C  GR+D+A+++   +E  G   + 
Sbjct: 65  CKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANL 124

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVF 409
            +YNTLIN  S   +  EA+ +   M  M   PD                         +
Sbjct: 125 VTYNTLINGLSSAGRSGEAVLV---MQGMTTTPDTQ----------------------TY 159

Query: 410 NCLVDGLCKSWRLRSAWELFKKL-PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           N ++ G CKS  +  A+   +++  R G  P+  TY+++I GLC    + KA +LL +M 
Sbjct: 160 NAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMI 219

Query: 469 E-------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENC 509
                               K ++  +A ELL  M +    PD +T S + + L +  + 
Sbjct: 220 GRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDV 279

Query: 510 HECMNLLPSFLSRN 523
            +   LL   +SR 
Sbjct: 280 DKGFALLEKMVSRG 293


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 108/365 (29%), Positives = 163/365 (44%), Gaps = 42/365 (11%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L E     G+ P     N  ++  CK   V +A   +  +      PDVVT   LI GLC
Sbjct: 41  LREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLC 100

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
             G+  EA  +  +      R     N++ Y ++I+GL   G   +     L M+G    
Sbjct: 101 KAGRLDEAQQVLDEME----RSGFAANLVTYNTLINGLSSAGRSGEA---VLVMQGMTTT 153

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           PD   YN++I  +C         G    A    EE     G     C PD  +Y  +IN 
Sbjct: 154 PDTQTYNAIIHGFC-------KSGEIDRAYGFLEEMKQRAG-----CSPDTFTYSILING 201

Query: 289 LCKDVLVDKAKELFLDMKSR-GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
           LCK   + KA EL  +M  R      VV +++L+DGYC    +D AR+L  S+   GC P
Sbjct: 202 LCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAP 261

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLT 407
           D  +Y+T+I+   +   V++  +L  +M+S G +P                      D+ 
Sbjct: 262 DVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKP----------------------DVV 299

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            +  LV GLCK+ ++  A  L K++   G  PN VTY+++  GLC    ++ A DLL  +
Sbjct: 300 TYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSI 359

Query: 468 EEKIR 472
            +K R
Sbjct: 360 RDKGR 364



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 156/369 (42%), Gaps = 44/369 (11%)

Query: 81  MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSD 140
           M PTP M  +N  + AL         + + + +      PD V+ N L+   CK   + +
Sbjct: 50  MAPTPSM--YNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDE 107

Query: 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200
           A   L  + R  F+ ++VT   LI GL   G+  EA  +              P+   Y 
Sbjct: 108 AQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGM-------TTTPDTQTYN 160

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGR-GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE 259
           +II G CK G +++      +MK R G  PD F Y+ LI   C + N   A        E
Sbjct: 161 AIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKAD-------E 213

Query: 260 LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSS 319
           L +E +         C   V+++ ++++  CK   +D+A+EL   M   G  PDVV YS+
Sbjct: 214 LLQEMIGRKD-----CCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYST 268

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           +IDG C  G +D    L   + S GC PD  +Y  L+    K  K+ EA  L   M+  G
Sbjct: 269 IIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDG 328

Query: 380 VRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
             P+                         ++ + DGLCK  +L  A +L   +   G   
Sbjct: 329 CTPNA----------------------VTYSLVFDGLCKIDKLDMANDLLTSIRDKGRIT 366

Query: 440 NVVTYTVMI 448
           +VV +  ++
Sbjct: 367 DVVAFEALL 375



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 145/328 (44%), Gaps = 46/328 (14%)

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           L+R  C+ G+   A  L  +    + +P + P    Y   +  LCK G V +   +  +M
Sbjct: 24  LVRAHCLAGELQAAMDLLREM---EQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNM 80

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDA--------KGNTSAALELHEEFVNG------N 268
           K     PD   +N+LI   C A   ++A        +   +A L  +   +NG      +
Sbjct: 81  KDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRS 140

Query: 269 GEL-----GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR-GIIPDVVVYSSLID 322
           GE      G+   PD  +Y +II+  CK   +D+A     +MK R G  PD   YS LI+
Sbjct: 141 GEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILIN 200

Query: 323 GYCLMGRIDDARKLFVS-IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
           G C    +  A +L    I  + C     ++NTL++ Y K + ++ A  L   M+  G  
Sbjct: 201 GLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCA 260

Query: 382 PDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
           PD                      +  ++ ++DGLC+   +   + L +K+   G +P+V
Sbjct: 261 PD----------------------VVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDV 298

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           VTYTV++ GLC  G + +A  L+  M E
Sbjct: 299 VTYTVLVTGLCKAGKMVEACRLVKRMLE 326



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 139/314 (44%), Gaps = 57/314 (18%)

Query: 230 DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSL 289
           D + Y  L+R +C A       G   AA++L  E      + G+   P + ++   +++L
Sbjct: 17  DNYTYFVLVRAHCLA-------GELQAAMDLLREM---EQQPGMAPTPSMYNF--FVHAL 64

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
           CK   V +A E+  +MK     PDVV +++LI G C  GR+D+A+++   +E  G   + 
Sbjct: 65  CKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANL 124

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVF 409
            +YNTLIN  S   +  EA+ +   M  M   PD                         +
Sbjct: 125 VTYNTLINGLSSAGRSGEAVLV---MQGMTTTPDTQ----------------------TY 159

Query: 410 NCLVDGLCKSWRLRSAWELFKKL-PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           N ++ G CKS  +  A+   +++  R G  P+  TY+++I GLC    + KA +LL +M 
Sbjct: 160 NAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMI 219

Query: 469 E-------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENC 509
                               K ++  +A ELL  M +    PD +T S + + L +  + 
Sbjct: 220 GRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDV 279

Query: 510 HECMNLLPSFLSRN 523
            +   LL   +SR 
Sbjct: 280 DKGFALLEKMVSRG 293



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 125/275 (45%), Gaps = 22/275 (8%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N+L+  L+        + + + + T    PD  + N +++ FCK   +  A+  L  +
Sbjct: 126 TYNTLINGLSSAGRSGEAVLVMQGMTTT---PDTQTYNAIIHGFCKSGEIDRAYGFLEEM 182

Query: 149 LRKVF-SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207
            ++   SPD  T   LI GLC      +A  L  + +    R +   +V+ + +++DG C
Sbjct: 183 KQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIG---RKDCCASVVAFNTLVDGYC 239

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC-CAVNWEDAKGNTSAALELHEEFVN 266
           K   +++ R L   M   G  PD   Y+++I   C C        G+      L E+ V+
Sbjct: 240 KAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRC--------GDVDKGFALLEKMVS 291

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
                   C PDV++Y  ++  LCK   + +A  L   M   G  P+ V YS + DG C 
Sbjct: 292 RG------CKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCK 345

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           + ++D A  L  SI  +G I D  ++  L+ S  K
Sbjct: 346 IDKLDMANDLLTSIRDKGRITDVVAFEALLLSVKK 380


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 116/418 (27%), Positives = 186/418 (44%), Gaps = 45/418 (10%)

Query: 47  VEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNF 106
           +   T ++ +L++N K     + +A+     +     TP + ++N+LL  L         
Sbjct: 34  IHTYTTIVDWLAKNKK-----IQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEA 88

Query: 107 ICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166
           I L  ++   G  PD V+   L++   K     +A+     +  +  + D V    LIRG
Sbjct: 89  IDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRG 148

Query: 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
           L   GK  +AS ++    +  C    +P+V+  +++IDGLCK G +     +F  M+ RG
Sbjct: 149 LLQAGKIPQASSVYKTMTSQGC----VPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARG 204

Query: 227 IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII 286
           + P+  VY++LI   C A   +        ALE+  +           C PD ++Y  +I
Sbjct: 205 LAPNEVVYSALIHGLCKARKMD-------CALEMLAQMKK------AFCTPDTITYNILI 251

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           + LCK   V  A+  F +M   G  PDV  Y+ LI G+C  G  D A  +F  + S  C 
Sbjct: 252 DGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCS 311

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406
           P+  +Y TLI+   K  ++ +A   Y  M   G  PD+                      
Sbjct: 312 PNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDS---------------------- 349

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            V++ LVDGLCKS +L     LF ++ R G   N  T T +I  LC    +++A  L 
Sbjct: 350 FVYSSLVDGLCKSGKLEGGCMLFDEMERSGV-ANSQTRTRLIFHLCKANRVDEAVSLF 406



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 170/382 (44%), Gaps = 39/382 (10%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           +F+ L+  L      +    L++   T G   D  +   +++   K   + +A   + +I
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
                +P + T   L+ GLC  G+  EA  L  K V   C P+V+     Y S+IDGL K
Sbjct: 61  TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVT----YTSLIDGLGK 116

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
                +   LF +M  RG+  D   Y +LIR    A       G    A  +++   +  
Sbjct: 117 KKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQA-------GKIPQASSVYKTMTSQG 169

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                 C PDV++  ++I+ LCK   +  A  +F  M++RG+ P+ VVYS+LI G C   
Sbjct: 170 ------CVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKAR 223

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL 388
           ++D A ++   ++   C PDT +YN LI+   K   V  A + + EM+  G +P      
Sbjct: 224 KMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKP------ 277

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
                           D+  +N L+ G CK+    +A  +F  +      PNVVTY  +I
Sbjct: 278 ----------------DVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLI 321

Query: 449 CGLCIEGGIEKAYDLLPDMEEK 470
            GLC    + KA      M+E+
Sbjct: 322 SGLCKRRQLTKASLYYQHMKER 343



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 124/244 (50%), Gaps = 30/244 (12%)

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
           C  D+ +Y +I++ L K+  + +A  L   + + G  P +  Y++L++G C MGR+++A 
Sbjct: 30  CTIDIHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAI 89

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC-------- 386
            L   I   GC PD  +Y +LI+   K ++  EA  L+ EM S G+  D  C        
Sbjct: 90  DLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGL 149

Query: 387 -----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
                I +A+ +++T+ +     D+   + ++DGLCK+ R+ +A  +FK +   G  PN 
Sbjct: 150 LQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNE 209

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEE 501
           V Y+ +I GLC                 K R+   A+E+L +M K +  PD IT +IL +
Sbjct: 210 VVYSALIHGLC-----------------KARKMDCALEMLAQMKKAFCTPDTITYNILID 252

Query: 502 LLNK 505
            L K
Sbjct: 253 GLCK 256


>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 443

 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 106/362 (29%), Positives = 165/362 (45%), Gaps = 56/362 (15%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
           PD++    LIRG C  GK  +A    T+ +        +P+VI Y  +I G+C  G    
Sbjct: 117 PDIIPCTSLIRGFCKIGKTRKA----TRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMD 172

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
              L  DM  RG  P    +N LI   C        KG    A+++ E+           
Sbjct: 173 AEKLLADMVRRGCSPSVVTFNILINFLC-------RKGLLGRAIDVLEKMPKHG------ 219

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
           C P+ LSY  +++  CK+  +++A E    M SRG  PD+V Y++L+   C  G++D A 
Sbjct: 220 CTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAV 279

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
           +L   + S+GC P   +YNT+I+  SK+ K ++A  L  EM + G++P            
Sbjct: 280 ELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKP------------ 327

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
                     D+  ++ LV GL +  ++  A + F  L   G +PN +TY  ++ GLC  
Sbjct: 328 ----------DIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLC-- 375

Query: 455 GGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMN 514
                          K R+  +AI+ L  M +R  KP E + +IL E L  +    E + 
Sbjct: 376 ---------------KARKTDRAIDFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALE 420

Query: 515 LL 516
           LL
Sbjct: 421 LL 422



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 150/326 (46%), Gaps = 19/326 (5%)

Query: 57  LSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           LS+  ++GE+E  +   F   M++    P +    SL+              + E +   
Sbjct: 91  LSKLVRNGELE--EGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDS 148

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G +PD ++ N+L++  C      DA   L  ++R+  SP VVT   LI  LC +G    A
Sbjct: 149 GAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRA 208

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             +  K     C     PN + Y  ++ G CK+  + +       M  RG YPD   YN+
Sbjct: 209 IDVLEKMPKHGC----TPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNT 264

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           L+   C         G   AA+EL  +  +        C P +++Y ++I+ L K    D
Sbjct: 265 LLTALC-------KDGKVDAAVELLNQLSSKG------CSPVLITYNTVIDGLSKVGKTD 311

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A +L  +M+++G+ PD++ YSSL+ G    G++D+A K F  +E  G  P+  +YN ++
Sbjct: 312 QAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIM 371

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRP 382
               K  K + A+     M+  G +P
Sbjct: 372 LGLCKARKTDRAIDFLAYMVQRGCKP 397



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 127/282 (45%), Gaps = 17/282 (6%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DA      M+    +P + +FN L+  L  K      I + E++   G  P+ +S N L+
Sbjct: 172 DAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLL 231

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           + FCK   +  A   LG++  +   PD+VT   L+  LC  GK   A  L  +  +  C 
Sbjct: 232 HGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCS 291

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
               P +I Y ++IDGL K G  ++   L  +M+ +G+ PD   Y+SL       V    
Sbjct: 292 ----PVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSL-------VGGLS 340

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
            +G    A++   +       LGV   P+ ++Y +I+  LCK    D+A +    M  RG
Sbjct: 341 REGKVDEAIKFFHDLE----VLGV--KPNAITYNAIMLGLCKARKTDRAIDFLAYMVQRG 394

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
             P    Y+ LI+G    G   +A +L   +   G +  +S+
Sbjct: 395 CKPTEASYTILIEGLAYEGLAKEALELLNELCLRGVVKKSSA 436



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 107/240 (44%), Gaps = 42/240 (17%)

Query: 287 NSLCKDVLVDKAKELFLDMKS---RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
           N+L K V   + +E F  ++S   RG IPD++  +SLI G+C +G+   A ++   IE  
Sbjct: 89  NNLSKLVRNGELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDS 148

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFE 403
           G +PD  +YN LI+      +  +A  L  +M+  G  P                     
Sbjct: 149 GAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSP--------------------- 187

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
             +  FN L++ LC+   L  A ++ +K+P++G  PN ++Y  ++ G C E  +E     
Sbjct: 188 -SVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKME----- 241

Query: 464 LPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
                       +AIE L KM  R   PD +T + L   L KD      + LL    S+ 
Sbjct: 242 ------------RAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKG 289


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 109/401 (27%), Positives = 191/401 (47%), Gaps = 30/401 (7%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142
           P P + +FN ++  L  +        L  R+  +G LPD V+ N L++ + K   + +  
Sbjct: 184 PAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVE 243

Query: 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202
             +  + R     DVVT   LI   C  G+   A G F        R  V+ NV+ +++ 
Sbjct: 244 QLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMK----REGVMANVVTFSTF 299

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
           +D  CK+G V +   LF  M+ RG+  + F Y  LI   C A   +D       A+ L +
Sbjct: 300 VDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDD-------AIVLLD 352

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
           E V     L V+      +Y  +++ LCK+  V +A+++   M+  G+  + ++Y++LI 
Sbjct: 353 EMVRQGVPLNVV------TYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIH 406

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
           G+ +    + A  L   ++++G   D S Y  LI     + K++EA SL  +M   G+ P
Sbjct: 407 GHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEP 466

Query: 383 D--------NSC-----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
           +        ++C     + EA  + + + ++ F+ ++  +  L+DGLCK+  +  A   F
Sbjct: 467 NYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHF 526

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            K+   G +PNV  YT ++ GLC  G + +A  L  +M  K
Sbjct: 527 NKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHK 567



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 115/447 (25%), Positives = 188/447 (42%), Gaps = 57/447 (12%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E EL +A   F+ M  M   P + +FNSL+              L E +   G   D V+
Sbjct: 201 EGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVT 260

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF- 183
            N L+NCFCK   +  A+     + R+    +VVT    +   C +G   EA  LF +  
Sbjct: 261 YNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMR 320

Query: 184 --------VAFDC----------------------RPNVIPNVICYASIIDGLCKDGFVN 213
                     + C                      R  V  NV+ Y  ++DGLCK+  V 
Sbjct: 321 VRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVA 380

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
           +   +   M+  G+  +  +Y +LI  +    N E A G       L  E  N   EL  
Sbjct: 381 EAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALG-------LLSEMKNKGLEL-- 431

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
               D+  Y ++I  LC    +D+AK L   M   G+ P+ ++Y++++D     G++ +A
Sbjct: 432 ----DISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEA 487

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---------- 383
             +   I   G  P+  +Y  LI+   K   ++EA+S + +M  +G+ P+          
Sbjct: 488 IAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDG 547

Query: 384 ---NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
              N C+ EA +LF  + +    LD  V+  L+DG  K   L  A+ L  K+   G + +
Sbjct: 548 LCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLD 607

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +  YT  I G C    + +A ++  +M
Sbjct: 608 LFCYTCFISGFCNLNMMPEAREVFSEM 634



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 84/245 (34%), Positives = 126/245 (51%), Gaps = 19/245 (7%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+V ++  +I+ LCK+  + +A+ LF  MK  G +PDVV ++SLIDGY   G +D+  +L
Sbjct: 186 PNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQL 245

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC- 386
              +   GC  D  +YN LIN + K  ++E A   +  M   GV           D  C 
Sbjct: 246 VEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCK 305

Query: 387 ---ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
              + EA +LF  +      L+   + CL+DG CK+ RL  A  L  ++ R G   NVVT
Sbjct: 306 EGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVT 365

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKM---AKRYVKPDEITVSILE 500
           YTV++ GLC E  + +A D+L  ME   +  ++A ELL+          K  E  + +L 
Sbjct: 366 YTVLVDGLCKERKVAEAEDVLRMME---KAGVRANELLYTTLIHGHFMNKNSEKALGLLS 422

Query: 501 ELLNK 505
           E+ NK
Sbjct: 423 EMKNK 427



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 147/333 (44%), Gaps = 43/333 (12%)

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           + DA  A+ R+      P+  T   ++  L           LF +  A        PNV 
Sbjct: 138 LDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLFEQLPA--------PNVF 189

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            +  +ID LCK+G + + R LF  MK  G  PD   +NSLI  Y                
Sbjct: 190 TFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGY-----------GKCGE 238

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
           L+  E+ V      G  C  DV++Y ++IN  CK   ++ A   F  MK  G++ +VV +
Sbjct: 239 LDEVEQLVEEMRRSG--CKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTF 296

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           S+ +D +C  G + +A KLF  +   G   +  +Y  LI+   K  ++++A+ L  EM+ 
Sbjct: 297 STFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVR 356

Query: 378 MGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
            GV                       L++  +  LVDGLCK  ++  A ++ + + + G 
Sbjct: 357 QGV----------------------PLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGV 394

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
             N + YT +I G  +    EKA  LL +M+ K
Sbjct: 395 RANELLYTTLIHGHFMNKNSEKALGLLSEMKNK 427


>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 129/504 (25%), Positives = 211/504 (41%), Gaps = 82/504 (16%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           +AL   N M      P   ++N++L AL  +        L  ++   GL P+  + NIL+
Sbjct: 229 EALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNSGLFPNRNTYNILV 288

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           + +CK+  + +A   +  +  K   PDV T   ++RGLC +GK  EA  L  K  +F   
Sbjct: 289 HGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKMESF--- 345

Query: 190 PNVIPNVICYASIIDG-----------------------------------LCKDGFVNK 214
             ++P+V+ Y ++IDG                                    C +G +++
Sbjct: 346 -KLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDE 404

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
              + + M   G  PD F YN++I  YC A       G  + A ++ +E     G  G+ 
Sbjct: 405 ASNVMVKMVESGFSPDCFTYNTMINGYCKA-------GKMAEAYKMMDEM----GRKGLK 453

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
              D  +  ++++++C +  +D A  L +  + RG I D V Y +LI GY    + D A 
Sbjct: 454 L--DTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRAL 511

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS--------- 385
           KL+  ++  G +    +YNT+I       K ++A+    E++  G+ PD S         
Sbjct: 512 KLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGY 571

Query: 386 CILEAAELFRTLHNTKFELDLT--VFNC--LVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
           C   A E     HN   E  L   +F C  L+ GLC+   L     LF      G   + 
Sbjct: 572 CWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPMDT 631

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEE 501
           VTY ++I   C E  +E A+DL+ +ME K                  ++PD  T + +  
Sbjct: 632 VTYNIIISSFCKERRLEDAFDLMTEMEGK-----------------NLEPDRYTYNAIVT 674

Query: 502 LLNKDENCHECMNLLPSFLSRNQE 525
            L K     E   L   F  + Q+
Sbjct: 675 GLTKAGRTEEAEKLALKFAEKGQQ 698



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 117/484 (24%), Positives = 219/484 (45%), Gaps = 51/484 (10%)

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLN---TIGLLPDFVSLNILMNC 131
           FN M  ++  P + + N+LL AL       + +   E       +G+ P+  + NIL++ 
Sbjct: 161 FNKMKRLRFRPNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPNVNTFNILIHG 220

Query: 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
           +C      +A   + ++      PD VT   ++  LC + + T+   L  +         
Sbjct: 221 YCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMK----NSG 276

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
           + PN   Y  ++ G CK  ++ +   +   M G+G+ PD + YN+++R  C        +
Sbjct: 277 LFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLC-------DE 329

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
           G    A+ L ++  +      ++  PDV++Y ++I+   +    D A +L  +MK+RG+ 
Sbjct: 330 GKIDEAVRLRDKMES----FKLV--PDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVK 383

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
            + V ++ +I  +C  G+ID+A  + V +   G  PD  +YNT+IN Y K  K+ EA  +
Sbjct: 384 ENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKM 443

Query: 372 YGEMISMGVRPD--------NSCILE-----AAELFRTLHNTKFELDLTVFNCLVDGLCK 418
             EM   G++ D        ++  LE     A  L        + LD   +  L+ G  K
Sbjct: 444 MDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFK 503

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-------- 470
             +   A +L++++   G    ++TY  +I GLC+ G  ++A D L ++ EK        
Sbjct: 504 DEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDEST 563

Query: 471 ----------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
                          KA +  +KM +  +KPD  T +IL   L ++    + + L  +++
Sbjct: 564 SNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWI 623

Query: 521 SRNQ 524
           S+ +
Sbjct: 624 SKGK 627



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 92/398 (23%), Positives = 167/398 (41%), Gaps = 37/398 (9%)

Query: 76  NYMIHMQPTPFMP---SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCF 132
           N M+ M  + F P   ++N+++              + + +   GL  D  +LN L++  
Sbjct: 407 NVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTM 466

Query: 133 CKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNV 192
           C    + DA+    +  ++ +  D VT G LI G     +   A  L+ +         +
Sbjct: 467 CLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMK----ETGI 522

Query: 193 IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252
           +  +I Y +II GLC  G  ++      ++  +G+ PD    N +I  YC    WE   G
Sbjct: 523 VATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYC----WE---G 575

Query: 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
               A + H + V  +        PD+ +   ++  LC++ +++K   LF    S+G   
Sbjct: 576 AVEKAFQFHNKMVEHS------LKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPM 629

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
           D V Y+ +I  +C   R++DA  L   +E +   PD  +YN ++   +K  + EEA  L 
Sbjct: 630 DTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAEKLA 689

Query: 373 GEMISMGVR---PDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
            +    G +    D S  L  +++              +++  +  LC   + + A +LF
Sbjct: 690 LKFAEKGQQVKTQDTSPELGTSDM--------------MYSEQISSLCTQGKYKDAMKLF 735

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           ++  + G   N  TY  ++ GL           LLP M
Sbjct: 736 QQAEQKGVSLNKYTYIKLMDGLLKRRKSFTTTSLLPFM 773



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 118/284 (41%), Gaps = 28/284 (9%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L E +   G++   ++ N ++   C       A   L  +L K   PD  T   +I G C
Sbjct: 513 LWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYC 572

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
            +G   +A     K V    +P++    I    ++ GLC++G + K   LF     +G  
Sbjct: 573 WEGAVEKAFQFHNKMVEHSLKPDIFTCNI----LLRGLCREGMLEKGLTLFNTWISKGKP 628

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
            D   YN +I  +C     EDA        +L  E    N E      PD  +Y +I+  
Sbjct: 629 MDTVTYNIIISSFCKERRLEDA-------FDLMTEMEGKNLE------PDRYTYNAIVTG 675

Query: 289 LCKDVLVDKAKELFL-------DMKSRGIIPDV----VVYSSLIDGYCLMGRIDDARKLF 337
           L K    ++A++L L        +K++   P++    ++YS  I   C  G+  DA KLF
Sbjct: 676 LTKAGRTEEAEKLALKFAEKGQQVKTQDTSPELGTSDMMYSEQISSLCTQGKYKDAMKLF 735

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
              E +G   +  +Y  L++   K  K     SL   M+S  ++
Sbjct: 736 QQAEQKGVSLNKYTYIKLMDGLLKRRKSFTTTSLLPFMVSATIQ 779


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 109/401 (27%), Positives = 191/401 (47%), Gaps = 30/401 (7%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142
           P P + +FN ++  L  +        L  R+  +G LPD V+ N L++ + K   + +  
Sbjct: 184 PAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVE 243

Query: 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202
             +  + R     DVVT   LI   C  G+   A G F        R  V+ NV+ +++ 
Sbjct: 244 QLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMK----REGVMANVVTFSTF 299

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
           +D  CK+G V +   LF  M+ RG+  + F Y  LI   C A   +D       A+ L +
Sbjct: 300 VDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDD-------AIVLLD 352

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
           E V     L V+      +Y  +++ LCK+  V +A+++   M+  G+  + ++Y++LI 
Sbjct: 353 EMVRQGVPLNVV------TYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIH 406

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
           G+ +    + A  L   ++++G   D S Y  LI     + K++EA SL  +M   G+ P
Sbjct: 407 GHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEP 466

Query: 383 D--------NSC-----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
           +        ++C     + EA  + + + ++ F+ ++  +  L+DGLCK+  +  A   F
Sbjct: 467 NYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHF 526

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            K+   G +PNV  YT ++ GLC  G + +A  L  +M  K
Sbjct: 527 NKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHK 567



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 115/447 (25%), Positives = 188/447 (42%), Gaps = 57/447 (12%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E EL +A   F+ M  M   P + +FNSL+              L E +   G   D V+
Sbjct: 201 EGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVT 260

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF- 183
            N L+NCFCK   +  A+     + R+    +VVT    +   C +G   EA  LF +  
Sbjct: 261 YNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMR 320

Query: 184 --------VAFDC----------------------RPNVIPNVICYASIIDGLCKDGFVN 213
                     + C                      R  V  NV+ Y  ++DGLCK+  V 
Sbjct: 321 VRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVA 380

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
           +   +   M+  G+  +  +Y +LI  +    N E A G       L  E  N   EL  
Sbjct: 381 EAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALG-------LLSEMKNKGLEL-- 431

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
               D+  Y ++I  LC    +D+AK L   M   G+ P+ ++Y++++D     G++ +A
Sbjct: 432 ----DISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEA 487

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---------- 383
             +   I   G  P+  +Y  LI+   K   ++EA+S + +M  +G+ P+          
Sbjct: 488 IAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDG 547

Query: 384 ---NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
              N C+ EA +LF  + +    LD  V+  L+DG  K   L  A+ L  K+   G + +
Sbjct: 548 LCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLD 607

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +  YT  I G C    + +A ++  +M
Sbjct: 608 LFCYTCFISGFCNLNMMPEAREVFSEM 634



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 84/245 (34%), Positives = 126/245 (51%), Gaps = 19/245 (7%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+V ++  +I+ LCK+  + +A+ LF  MK  G +PDVV ++SLIDGY   G +D+  +L
Sbjct: 186 PNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQL 245

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC- 386
              +   GC  D  +YN LIN + K  ++E A   +  M   GV           D  C 
Sbjct: 246 VEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCK 305

Query: 387 ---ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
              + EA +LF  +      L+   + CL+DG CK+ RL  A  L  ++ R G   NVVT
Sbjct: 306 EGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVT 365

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKM---AKRYVKPDEITVSILE 500
           YTV++ GLC E  + +A D+L  ME   +  ++A ELL+          K  E  + +L 
Sbjct: 366 YTVLVDGLCKERKVAEAEDVLRMME---KAGVRANELLYTTLIHGHFMNKNSEKALGLLS 422

Query: 501 ELLNK 505
           E+ NK
Sbjct: 423 EMKNK 427


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 124/440 (28%), Positives = 201/440 (45%), Gaps = 54/440 (12%)

Query: 54  LKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERL 113
           L YL    + G+V+    L FF  M+++     + S   +L  L  +        L + +
Sbjct: 198 LVYLLALRRGGQVD--SCLRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEV 255

Query: 114 NTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF 173
              G+  + V+ N  +  + K + +      L  + ++  + +VVT   LI G    GK 
Sbjct: 256 AAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKI 315

Query: 174 TEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233
            EA  LF +         +  +V  Y SII   C+ G V +  VLF +M  +G+ P A  
Sbjct: 316 EEAQRLFEEMR----EKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHT 371

Query: 234 YNSLIRVYCCAVNWEDAK----GNTSAALELH----EEFVNGNGELGVI----------- 274
           Y +LI   C A   E A+          ++L+       ++G  E G++           
Sbjct: 372 YGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVME 431

Query: 275 ---CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
                 DV +Y SI + LCK    D+AK L   M  RG+ P+ + +++LID YC  G   
Sbjct: 432 KKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFV 491

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAA 391
           +A+++F  +E +G +P+  +YN LI+ YSK   ++EA  L  E+ + G+ PD        
Sbjct: 492 EAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPD-------- 543

Query: 392 ELFRTLHNTKFELDLTVFNC--LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
                           V+ C  L+ G C   ++  A +LF ++P+ G  PNVVTYT MI 
Sbjct: 544 ----------------VYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMIS 587

Query: 450 GLCIEGGIEKAYDLLPDMEE 469
           GL  +G  E+A+ L  +M+E
Sbjct: 588 GLSKDGRSEEAFKLYDEMKE 607



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 109/405 (26%), Positives = 188/405 (46%), Gaps = 47/405 (11%)

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           SL I+++  CK   V      +  +  K    +VVT    I G   +       G   + 
Sbjct: 231 SLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDL----GGVAEI 286

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
           +    +  V  NV+ Y  +I G    G + + + LF +M+ +GI  D +VY S+I   C 
Sbjct: 287 LTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCR 346

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
           +       GN   AL L +E  +     G+I  P   +Y ++I+ +CK   ++ A+ L  
Sbjct: 347 S-------GNVKRALVLFDEMTDK----GLI--PSAHTYGALIHGVCKAGQMEAAQMLVN 393

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
           +M+ +GI  + V++++LIDGYC  G +D+A +L V +E +G   D  +YN++ +   K+ 
Sbjct: 394 EMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLN 453

Query: 364 KVEEALSLYGEMISMGVRPDNSCI-------------LEAAELFRTLHNTKFELDLTVFN 410
           + +EA  L   M+  GV P+                 +EA  +FR +       ++  +N
Sbjct: 454 RKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYN 513

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            L+DG  K   ++ A +L  +L   G  P+V T T +I G CI+G +        DM   
Sbjct: 514 VLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKV--------DM--- 562

Query: 471 IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
                 A++L  +M +R + P+ +T + +   L+KD    E   L
Sbjct: 563 ------ALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKL 601



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 150/324 (46%), Gaps = 33/324 (10%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L E +   G+  D      +++C C+   V  A V    +  K   P   T G LI G+C
Sbjct: 321 LFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVC 380

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
             G+   A  L  +         +  N + + ++IDG C+ G V++   L + M+ +G+ 
Sbjct: 381 KAGQMEAAQMLVNEMQG----KGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLE 436

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKG------------NTSAALELHE------EFVNGNG- 269
            D F YNS+    C     ++AKG            NT +   L +       FV     
Sbjct: 437 SDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRV 496

Query: 270 -----ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
                E G +  P++++Y  +I+   K   + +A +L  ++++RG+IPDV   +SLI G 
Sbjct: 497 FREMEEKGNV--PNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGE 554

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           C+ G++D A KLF  +   G +P+  +Y  +I+  SK  + EEA  LY EM   G+ PD+
Sbjct: 555 CIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDD 614

Query: 385 SCILEAAELFRTLHNTKFELDLTV 408
           +     + L  +LH+    + + +
Sbjct: 615 TVY---SSLVGSLHSADESISMQI 635



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 79/176 (44%), Gaps = 21/176 (11%)

Query: 313 DVVVYSSLI--DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK---IEKVEE 367
           +V VYS  I  DG C  G ++  RKL   + ++G   +  +YN  I  Y K   +  V E
Sbjct: 226 EVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAE 285

Query: 368 ALSLYGEMISMGVR-------------PDNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
            L+L   M   GV               +   I EA  LF  +     E D+ V+  ++ 
Sbjct: 286 ILTL---MEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIIS 342

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
             C+S  ++ A  LF ++   G  P+  TY  +I G+C  G +E A  L+ +M+ K
Sbjct: 343 CNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGK 398



 Score = 39.3 bits (90), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 77/197 (39%), Gaps = 35/197 (17%)

Query: 277 PDVLSYCSIINSLCKDVLVDK--AKELFLDMK--------SRGIIPDVVVYSSLIDGYCL 326
           PD+ +Y ++I  L +    DK    + F +++          G+   V V +SL+D  C 
Sbjct: 89  PDLRAYITLIFKLYRSRKSDKLHKSQKFAEIRHLFNCAAVDDGLRVPVTVIASLVDDACN 148

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-NS 385
             + + A+                 ++ L   Y+  +   EAL  +  M   G   D  S
Sbjct: 149 ESKCNRAK------------FKEKFFDLLFRVYADNKMFGEALEAFEHMEKKGFHIDERS 196

Query: 386 CILEAAEL------------FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
           C++    L            FR + N   E+ +     ++DGLCK   +    +L  ++ 
Sbjct: 197 CLVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVA 256

Query: 434 RYGPEPNVVTYTVMICG 450
             G + NVVTY   I G
Sbjct: 257 AKGVKANVVTYNAFIEG 273


>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
 gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
          Length = 767

 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 129/466 (27%), Positives = 192/466 (41%), Gaps = 63/466 (13%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKM------IGVSDAF 142
           S N LL  LA          L E + + G  P+  +  I+MN +CK       I    A 
Sbjct: 216 SCNFLLKCLAEANRREFLRSLFEEMKSTGPPPNVFTYTIMMNFYCKGNFGEADIDTRQAT 275

Query: 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202
             L  + R   SP VVT    I GLC  G    A       ++     N + NV CY +I
Sbjct: 276 EILEEMERNGESPTVVTYSTYIYGLCRVGYVESALDFVRSLIS----ANGLVNVYCYNAI 331

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
           I GLCK G +++   +  +MK  GI PD + Y+ LI  +C        +G+    L L E
Sbjct: 332 IHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFC-------KQGDVEKGLYLIE 384

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
           E    N E      P ++SY S+ + LCK  L D + ++F D+ + G   D   YS LI 
Sbjct: 385 EMKYSNME------PSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIK 438

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
           G+C+ G +D A KL   +      PD S++ +L++ + K+     AL  +  M+  G+ P
Sbjct: 439 GFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILP 498

Query: 383 DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
                                  +   N ++D  C+  R+  A  L  ++   G  PN+ 
Sbjct: 499 ----------------------SIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLF 536

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKM 484
           TY  +I  LC E   E+A +L P M +                  K     KA+ L  +M
Sbjct: 537 TYNAVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARM 596

Query: 485 AKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
            K  V PD +  +IL  +L       E  NL            K++
Sbjct: 597 LKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKIS 642



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 128/514 (24%), Positives = 216/514 (42%), Gaps = 83/514 (16%)

Query: 56  YLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNT 115
           Y   N    +++   A      M     +P + ++++ +  L    Y  + +     L +
Sbjct: 259 YCKGNFGEADIDTRQATEILEEMERNGESPTVVTYSTYIYGLCRVGYVESALDFVRSLIS 318

Query: 116 IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
              L +    N +++  CK   + +A   L  +     SPDV T   LI G C QG   +
Sbjct: 319 ANGLVNVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEK 378

Query: 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
              L  +        N+ P+++ Y+S+  GLCK    +    +F D+   G   D   Y+
Sbjct: 379 GLYLIEEMKY----SNMEPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYS 434

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
            LI+ +C        +G+  +A +L EE V  N        PD  ++ S+++  CK  L 
Sbjct: 435 ILIKGFC-------MQGDLDSAHKLMEEMVRNN------LAPDPSNFESLVHGFCKMGLW 481

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN-- 353
             A E F  M   GI+P +   + +ID +C  GR+++A  L   ++++G  P+  +YN  
Sbjct: 482 VNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAV 541

Query: 354 ---------------------------------TLINSYSKIEKVEEALSLYGEMISMGV 380
                                            TLI+ ++K    ++AL LY  M+ +GV
Sbjct: 542 INRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGV 601

Query: 381 RPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
            PD              S + EA  LF+ +       D   +  ++ G C+   +R AW 
Sbjct: 602 TPDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWA 661

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK----------------- 470
           LF ++ + G  P VVTYT ++ G C    I+ A  L+ +M+ K                 
Sbjct: 662 LFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHR 721

Query: 471 IRECL-KAIELLHKMAKRYVKPDEITVSILEELL 503
            R  L KA+E+L++M +  V PD +T  +LE LL
Sbjct: 722 RRGNLDKALEMLNEMKENGVLPDHMTYMMLEWLL 755



 Score = 41.6 bits (96), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 11/114 (9%)

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
           NS +  A ++F     T  EL     N L+  L ++ R      LF+++   GP PNV T
Sbjct: 192 NSMLENAVDVFLQAKKTGLELSTRSCNFLLKCLAEANRREFLRSLFEEMKSTGPPPNVFT 251

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVS 497
           YT+M+   C +G   +A     D++ +     +A E+L +M +    P  +T S
Sbjct: 252 YTIMMNFYC-KGNFGEA-----DIDTR-----QATEILEEMERNGESPTVVTYS 294


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 124/440 (28%), Positives = 201/440 (45%), Gaps = 54/440 (12%)

Query: 54  LKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERL 113
           L YL    + G+V+    L FF  M+++     + S   +L  L  +        L + +
Sbjct: 194 LVYLLALRRGGQVD--SCLRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEV 251

Query: 114 NTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF 173
              G+  + V+ N  +  + K + +      L  + ++  + +VVT   LI G    GK 
Sbjct: 252 AAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKI 311

Query: 174 TEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233
            EA  LF +         +  +V  Y SII   C+ G V +  VLF +M  +G+ P A  
Sbjct: 312 EEAQRLFEEMR----EKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHT 367

Query: 234 YNSLIRVYCCAVNWEDAK----GNTSAALELH----EEFVNGNGELGVI----------- 274
           Y +LI   C A   E A+          ++L+       ++G  E G++           
Sbjct: 368 YGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVME 427

Query: 275 ---CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
                 DV +Y SI + LCK    D+AK L   M  RG+ P+ + +++LID YC  G   
Sbjct: 428 KKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFV 487

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAA 391
           +A+++F  +E +G +P+  +YN LI+ YSK   ++EA  L  E+ + G+ PD        
Sbjct: 488 EAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPD-------- 539

Query: 392 ELFRTLHNTKFELDLTVFNC--LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
                           V+ C  L+ G C   ++  A +LF ++P+ G  PNVVTYT MI 
Sbjct: 540 ----------------VYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMIS 583

Query: 450 GLCIEGGIEKAYDLLPDMEE 469
           GL  +G  E+A+ L  +M+E
Sbjct: 584 GLSKDGRSEEAFKLYDEMKE 603



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 109/405 (26%), Positives = 188/405 (46%), Gaps = 47/405 (11%)

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           SL I+++  CK   V      +  +  K    +VVT    I G   +       G   + 
Sbjct: 227 SLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDL----GGVAEI 282

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
           +    +  V  NV+ Y  +I G    G + + + LF +M+ +GI  D +VY S+I   C 
Sbjct: 283 LTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCR 342

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
           +       GN   AL L +E  +     G+I  P   +Y ++I+ +CK   ++ A+ L  
Sbjct: 343 S-------GNVKRALVLFDEMTDK----GLI--PSAHTYGALIHGVCKAGQMEAAQMLVN 389

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
           +M+ +GI  + V++++LIDGYC  G +D+A +L V +E +G   D  +YN++ +   K+ 
Sbjct: 390 EMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLN 449

Query: 364 KVEEALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFELDLTVFN 410
           + +EA  L   M+  GV P+                 +EA  +FR +       ++  +N
Sbjct: 450 RKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYN 509

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            L+DG  K   ++ A +L  +L   G  P+V T T +I G CI+G +        DM   
Sbjct: 510 VLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKV--------DM--- 558

Query: 471 IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
                 A++L  +M +R + P+ +T + +   L+KD    E   L
Sbjct: 559 ------ALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKL 597



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 148/317 (46%), Gaps = 33/317 (10%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L E +   G+  D      +++C C+   V  A V    +  K   P   T G LI G+C
Sbjct: 317 LFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVC 376

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
             G+   A  L  +         +  N + + ++IDG C+ G V++   L + M+ +G+ 
Sbjct: 377 KAGQMEAAQMLVNEMQG----KGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLE 432

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKG------------NTSAALELHE------EFVNGNG- 269
            D F YNS+    C     ++AKG            NT +   L +       FV     
Sbjct: 433 SDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRV 492

Query: 270 -----ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
                E G +  P++++Y  +I+   K   + +A +L  ++++RG+IPDV   +SLI G 
Sbjct: 493 FREMEEKGNV--PNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGE 550

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           C+ G++D A KLF  +   G +P+  +Y  +I+  SK  + EEA  LY EM   G+ PD+
Sbjct: 551 CIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDD 610

Query: 385 SCILEAAELFRTLHNTK 401
           +     + L  +LH+ +
Sbjct: 611 TVY---SSLVGSLHSAE 624



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 79/176 (44%), Gaps = 21/176 (11%)

Query: 313 DVVVYSSLI--DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK---IEKVEE 367
           +V VYS  I  DG C  G ++  RKL   + ++G   +  +YN  I  Y K   +  V E
Sbjct: 222 EVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAE 281

Query: 368 ALSLYGEMISMGVR-------------PDNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
            L+L   M   GV               +   I EA  LF  +     E D+ V+  ++ 
Sbjct: 282 ILTL---MEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIIS 338

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
             C+S  ++ A  LF ++   G  P+  TY  +I G+C  G +E A  L+ +M+ K
Sbjct: 339 CNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGK 394



 Score = 39.7 bits (91), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 77/197 (39%), Gaps = 35/197 (17%)

Query: 277 PDVLSYCSIINSLCKDVLVDK--AKELFLDMK--------SRGIIPDVVVYSSLIDGYCL 326
           PD+ +Y ++I  L +    DK    + F +++          G+   V V +SL+D  C 
Sbjct: 85  PDLRAYITLIFKLYRSRKSDKLHKSQKFAEIRHLFNCAAVDDGLRVPVTVIASLVDDACN 144

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-NS 385
             + + A+                 ++ L   Y+  +   EAL  +  M   G   D  S
Sbjct: 145 ESKCNRAK------------FKEKFFDLLFRVYADNKMFGEALEAFEHMEKKGFHIDERS 192

Query: 386 CILEAAEL------------FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
           C++    L            FR + N   E+ +     ++DGLCK   +    +L  ++ 
Sbjct: 193 CLVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVA 252

Query: 434 RYGPEPNVVTYTVMICG 450
             G + NVVTY   I G
Sbjct: 253 AKGVKANVVTYNAFIEG 269


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 111/377 (29%), Positives = 185/377 (49%), Gaps = 34/377 (9%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRK--VFSPDVVTLGCLIRG 166
           L + L   GL PD    N ++   CK   V +A   L R +RK  VF PD V    +I G
Sbjct: 299 LVDELKGKGLKPDEYIYNNIILLLCKNGEVVEA-EQLLRGMRKWGVF-PDNVVYTTVISG 356

Query: 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
            C  G  + A  LF +      R  ++P+++ Y S+I G+CK G + + R +F +M  +G
Sbjct: 357 FCKLGNVSAACKLFDEMR----RKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKG 412

Query: 227 IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII 286
           + PD   Y +LI  YC A       G    A  +H + V           P+V++Y ++ 
Sbjct: 413 LEPDEVTYTALIDGYCKA-------GEMKEAFSVHNQMVQKG------LTPNVVTYTALA 459

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           + LCK+  +D A EL  +M  +G+ P+V  Y+++++G C +G I+   KL   ++  G  
Sbjct: 460 DGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFY 519

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------NSCILEAAE-L 393
           PDT +Y TL+++Y K+ ++ +A  L   M++  ++P              S +LE  E L
Sbjct: 520 PDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERL 579

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
              +       + T FN L+   C    +R+  E++K +   G  P+  TY ++I G C 
Sbjct: 580 IEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCK 639

Query: 454 EGGIEKAYDLLPDMEEK 470
              +++A+ L  +M EK
Sbjct: 640 ARNMKEAWFLHKEMVEK 656



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/362 (29%), Positives = 181/362 (50%), Gaps = 57/362 (15%)

Query: 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV 215
           + V+   ++  LC  GK  EA  L    V    R N  P+V+ Y  ++ G C+ G ++KV
Sbjct: 241 NTVSCNIVLHCLCQLGKVREAHNLL---VQMTDRGN-FPDVVSYGVVVSGYCRIGELDKV 296

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
             L  ++KG+G+ PD ++YN++I + C         G    A    E+ + G  + GV  
Sbjct: 297 LKLVDELKGKGLKPDEYIYNNIILLLC-------KNGEVVEA----EQLLRGMRKWGVF- 344

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
            PD + Y ++I+  CK   V  A +LF +M+ + I+PD+V Y+S+I G C  G++ +AR+
Sbjct: 345 -PDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEARE 403

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395
           +F  +  +G  PD  +Y  LI+ Y K  +++EA S++ +M+  G+ P             
Sbjct: 404 MFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTP------------- 450

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
                    ++  +  L DGLCK+  +  A EL  ++ R G +PNV TY  ++ GLC  G
Sbjct: 451 ---------NVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIG 501

Query: 456 GIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVS 497
            IE+   L+ +M+                   K+ E  KA ELL  M  + ++P  +T +
Sbjct: 502 NIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFN 561

Query: 498 IL 499
           +L
Sbjct: 562 VL 563



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 169/384 (44%), Gaps = 66/384 (17%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ PD V    +++ FCK+  VS A      + RK   PD+VT   +I G+C  GK  EA
Sbjct: 342 GVFPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEA 401

Query: 177 SGLFTKFVAFDCRPNVI-------------------------------PNVICYASIIDG 205
             +F + +     P+ +                               PNV+ Y ++ DG
Sbjct: 402 REMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADG 461

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
           LCK+G ++    L  +M  +G+ P+ + YN+++   C         GN    ++L EE  
Sbjct: 462 LCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLC-------KIGNIEQTVKLMEEMD 514

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
                     +PD ++Y +++++ CK   + KA EL   M ++ + P +V ++ L++G+C
Sbjct: 515 LAG------FYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFC 568

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
           + G ++D  +L   +  +G +P+ +++N+L+  Y     +     +Y  M   GV PD++
Sbjct: 569 MSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSN 628

Query: 386 CILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
                                  +N L+ G CK+  ++ AW L K++   G      TY 
Sbjct: 629 ----------------------TYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYD 666

Query: 446 VMICGLCIEGGIEKAYDLLPDMEE 469
            +I G        +A  L  +M +
Sbjct: 667 ALIRGFYKRKKFVEARKLFEEMRK 690



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 119/436 (27%), Positives = 203/436 (46%), Gaps = 48/436 (11%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           E    +G+  + VS NI+++C C++  V +A   L ++  +   PDVV+ G ++ G C  
Sbjct: 231 EEFPELGVCWNTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRI 290

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G+  +   L  +      +P+       Y +II  LCK+G V +   L   M+  G++PD
Sbjct: 291 GELDKVLKLVDELKGKGLKPDEY----IYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPD 346

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
             VY ++I  +C         GN SAA +L +E             PD+++Y S+I+ +C
Sbjct: 347 NVVYTTVISGFC-------KLGNVSAACKLFDEMRRKK------IVPDIVTYTSVIHGIC 393

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K   + +A+E+F +M  +G+ PD V Y++LIDGYC  G + +A  +   +  +G  P+  
Sbjct: 394 KSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVV 453

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSC---------ILEAAELFRTL 397
           +Y  L +   K  +++ A  L  EM   G++P+    N+          I +  +L   +
Sbjct: 454 TYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEM 513

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
               F  D   +  L+D  CK   +  A EL + +     +P +VT+ V++ G C+ G +
Sbjct: 514 DLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGML 573

Query: 458 EKAYDLLPDMEEK-----------------IRECLKAIELLHK-MAKRYVKPDEITVSIL 499
           E    L+  M EK                 I+  ++A   ++K M  R V PD  T +IL
Sbjct: 574 EDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNIL 633

Query: 500 EELLNKDENCHECMNL 515
            +   K  N  E   L
Sbjct: 634 IKGHCKARNMKEAWFL 649



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 149/315 (47%), Gaps = 52/315 (16%)

Query: 202 IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261
           ++  LC+ G V +   L + M  RG +PD   Y  ++  YC         G     L+L 
Sbjct: 248 VLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRI-------GELDKVLKLV 300

Query: 262 EEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
           +E + G G       PD   Y +II  LCK+  V +A++L   M+  G+ PD VVY+++I
Sbjct: 301 DE-LKGKG-----LKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVI 354

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
            G+C +G +  A KLF  +  +  +PD  +Y ++I+   K  K+ EA  ++ EM+  G+ 
Sbjct: 355 SGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLE 414

Query: 382 PDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
           PD                         +  L+DG CK+  ++ A+ +  ++ + G  PNV
Sbjct: 415 PDE----------------------VTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNV 452

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEE 501
           VTYT +  GLC  G I+ A                  ELLH+M+++ ++P+  T + +  
Sbjct: 453 VTYTALADGLCKNGEIDVAN-----------------ELLHEMSRKGLQPNVYTYNTIVN 495

Query: 502 LLNKDENCHECMNLL 516
            L K  N  + + L+
Sbjct: 496 GLCKIGNIEQTVKLM 510



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 131/290 (45%), Gaps = 34/290 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL PD V+   L++ +CK   + +AF    ++++K  +P+VVT   L  GLC  G+   A
Sbjct: 412 GLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVA 471

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
           + L  +      R  + PNV  Y +I++GLCK G + +   L  +M   G YPD   Y +
Sbjct: 472 NELLHEM----SRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTT 527

Query: 237 LIRVYCCAVNWEDAKGN--------------------------TSAALELHEEFVNGNGE 270
           L+  YC     E AK +                           S  LE  E  +    E
Sbjct: 528 LMDAYCKMG--EMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLE 585

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
            G++  P+  ++ S++   C    +    E++  M  RG++PD   Y+ LI G+C    +
Sbjct: 586 KGIM--PNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNM 643

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
            +A  L   +  +G     ++Y+ LI  + K +K  EA  L+ EM   G+
Sbjct: 644 KEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGL 693



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 118/261 (45%), Gaps = 19/261 (7%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+GE+++ + L        +QP  +  ++N+++  L         + L E ++  G  PD
Sbjct: 464 KNGEIDVANELLHEMSRKGLQPNVY--TYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPD 521

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            ++   LM+ +CKM  ++ A   L  +L K   P +VT   L+ G CM G   +      
Sbjct: 522 TITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGE---- 577

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           + + +     ++PN   + S++   C    +     ++  M  RG+ PD+  YN LI+ +
Sbjct: 578 RLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGH 637

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C A N ++       A  LH+E V     +         +Y ++I    K     +A++L
Sbjct: 638 CKARNMKE-------AWFLHKEMVEKGYSV------TAATYDALIRGFYKRKKFVEARKL 684

Query: 302 FLDMKSRGIIPDVVVYSSLID 322
           F +M+  G++ +  +Y   +D
Sbjct: 685 FEEMRKHGLVAEKDIYDIFVD 705


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 109/366 (29%), Positives = 179/366 (48%), Gaps = 47/366 (12%)

Query: 105 NFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLI 164
            F+C   ++   GL PD+ +    +  +C+   V  AF    R+  ++ + + V+   LI
Sbjct: 213 QFMC---KMIQAGLSPDYFTSTSFILGYCRSKDVDSAF----RVFEEMPNRNEVSYNQLI 265

Query: 165 RGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224
            GLC  G+  EA  LF + +  DC     PNV  Y ++I GLC+   V+K   L  +M  
Sbjct: 266 HGLCEAGRIDEAVSLFVR-MKDDC---CYPNVYTYTALIKGLCRKN-VHKAMGLLDEMLE 320

Query: 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCS 284
           R + PD   YNSLI   C A       G+  +A  L    ++   E G++  PD  +Y  
Sbjct: 321 RNLVPDLITYNSLIAGQCRA-------GHLDSAYRL----LSLMKERGLV--PDQRTYGC 367

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
            I+ LCK   V++A+ LF  +   G+  +V++YS LIDGYC +G++D+A  LF  + S+ 
Sbjct: 368 FIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKN 427

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL 404
           C P+  ++N LI+       ++EALSL+ +M+ MG++P                      
Sbjct: 428 CSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKP---------------------- 465

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            +  FN L+  + K      A +  +K+   G +P   TY   I   C  G +++A D++
Sbjct: 466 TVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMM 525

Query: 465 PDMEEK 470
             M+E+
Sbjct: 526 VQMKEE 531



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 108/420 (25%), Positives = 179/420 (42%), Gaps = 48/420 (11%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + ++ +L+  L  K  +     L E L    L+PD ++ N L+   C+   +  A+  
Sbjct: 291 PNVYTYTALIKGLCRKNVHKAMGLLDEMLER-NLVPDLITYNSLIAGQCRAGHLDSAYRL 349

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           L  +  +   PD  T GC I  LC   +  EA  LF           V  NVI Y+ +ID
Sbjct: 350 LSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLT----EEGVSANVIMYSVLID 405

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           G CK G V++   LF  M  +   P+A+ +N+LI   C A       GN   AL L ++ 
Sbjct: 406 GYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSA-------GNLKEALSLFDQM 458

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           V    ++G+   P V ++  +I  + K    D A +    M S G  P    Y++ I+ Y
Sbjct: 459 V----KMGL--KPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVY 512

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           C  G++ +A  + V ++ EG  PD  +Y +LI +Y K+     A  +   M      P +
Sbjct: 513 CSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADCEPSH 572

Query: 385 SCILEAAELFRTLHNTKF------ELDLTVFNCLVD----GLCKSWRLRSAWELFKKLPR 434
              L    L + L + ++      E  +   +   D     + K        ELF+++ +
Sbjct: 573 HTFL---SLIKQLFDKRYVVEKSGETGVESVSNFGDVPGSNMWKMMEFDIVIELFEEMEK 629

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEI 494
           +G  P+   Y  +I G+C                 K+     A++LL +M K  + P E+
Sbjct: 630 HGCTPDSKCYEKLISGIC-----------------KVENLGIALKLLDQMQKEGISPSEM 672



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 102/423 (24%), Positives = 170/423 (40%), Gaps = 77/423 (18%)

Query: 103 YVNFICLSER----------LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKV 152
           +++F+C S R          L   G+  + +  ++L++ +CK+  V +A     ++L K 
Sbjct: 368 FIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKN 427

Query: 153 FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI------------------- 193
            SP+  T   LI GLC  G   EA  LF + V    +P V                    
Sbjct: 428 CSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAH 487

Query: 194 ------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
                       P    Y + I+  C  G V +   + + MK  G+ PD F Y SLI+ Y
Sbjct: 488 KCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAY 547

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC-KDVLVDKAKE 300
                     G T +A ++ +   + +      C P   ++ S+I  L  K  +V+K+ E
Sbjct: 548 -------GKLGLTYSAFDVLKSMFDAD------CEPSHHTFLSLIKQLFDKRYVVEKSGE 594

Query: 301 LFLDMKSR-GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
             ++  S  G +P   ++         M   D   +LF  +E  GC PD+  Y  LI+  
Sbjct: 595 TGVESVSNFGDVPGSNMWK--------MMEFDIVIELFEEMEKHGCTPDSKCYEKLISGI 646

Query: 360 SKIEKVEEALSLYGEMISMGVRPDN-------SCIL------EAAELFRTLHNTKFELDL 406
            K+E +  AL L  +M   G+ P         SC        EAA +   +  +     L
Sbjct: 647 CKVENLGIALKLLDQMQKEGISPSEMVFNAVISCCCKLQKYGEAANIVEDMICSGHSPQL 706

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
                L+ GL +         +FKKL   G   + + + ++I G+  +G +E+   L  +
Sbjct: 707 EHCKTLICGLYEEGETERGNSVFKKLRGCGYNDDEIAWKILIDGMLKQGLVEEFSQLFEE 766

Query: 467 MEE 469
           ME+
Sbjct: 767 MEK 769



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 101/429 (23%), Positives = 166/429 (38%), Gaps = 52/429 (12%)

Query: 47  VEEKTKLLKYLSENSKSGEV--------------ELNDALCFFNYMIHMQPTPFMPSFNS 92
           VEE  +L   L+E   S  V              ++++A C F  M+    +P   +FN+
Sbjct: 378 VEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNA 437

Query: 93  LLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKV 152
           L+  L         + L +++  +GL P   + NIL+    K     DA   L +++   
Sbjct: 438 LIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSG 497

Query: 153 FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFV 212
             P   T    I   C  GK  EA  +  +         V P+   Y S+I    K G  
Sbjct: 498 EKPVARTYNAFIEVYCSAGKVQEAEDMMVQMK----EEGVPPDDFTYTSLIKAYGKLGLT 553

Query: 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
                +   M      P    + SLI+                  L      V  +GE G
Sbjct: 554 YSAFDVLKSMFDADCEPSHHTFLSLIK-----------------QLFDKRYVVEKSGETG 596

Query: 273 VICHPDVLSYCSIINS-LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
           V     V ++  +  S + K +  D   ELF +M+  G  PD   Y  LI G C +  + 
Sbjct: 597 V---ESVSNFGDVPGSNMWKMMEFDIVIELFEEMEKHGCTPDSKCYEKLISGICKVENLG 653

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-NSC---- 386
            A KL   ++ EG  P    +N +I+   K++K  EA ++  +MI  G  P    C    
Sbjct: 654 IALKLLDQMQKEGISPSEMVFNAVISCCCKLQKYGEAANIVEDMICSGHSPQLEHCKTLI 713

Query: 387 --ILEAAE------LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
             + E  E      +F+ L    +  D   +  L+DG+ K   +    +LF+++ + G  
Sbjct: 714 CGLYEEGETERGNSVFKKLRGCGYNDDEIAWKILIDGMLKQGLVEEFSQLFEEMEKNGCN 773

Query: 439 PNVVTYTVM 447
            +  TY+++
Sbjct: 774 FSPRTYSIL 782



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 127/325 (39%), Gaps = 76/325 (23%)

Query: 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS 318
           E+ EEFV+           D+ ++  +IN  CK   V +AK+    M   G+ PD    +
Sbjct: 182 EMLEEFVS----------MDIYTFNLMINVYCKMGFVKEAKQFMCKMIQAGLSPDYFTST 231

Query: 319 SLIDGYCLMG-------------------------------RIDDARKLFVSIESEGCIP 347
           S I GYC                                  RID+A  LFV ++ + C P
Sbjct: 232 SFILGYCRSKDVDSAFRVFEEMPNRNEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYP 291

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCIL---------EAAELF 394
           +  +Y  LI    + + V +A+ L  EM+   + PD    NS I           A  L 
Sbjct: 292 NVYTYTALIKGLCR-KNVHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLL 350

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
             +       D   + C +D LCKS R+  A  LF  L   G   NV+ Y+V+I G C  
Sbjct: 351 SLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKV 410

Query: 455 GGIEKAYDLLPDMEEK------------------IRECLKAIELLHKMAKRYVKPDEITV 496
           G +++A  L   M  K                       +A+ L  +M K  +KP   T 
Sbjct: 411 GKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTF 470

Query: 497 SILEELLNKD---ENCHECMNLLPS 518
           +IL   + K    ++ H+C+  + S
Sbjct: 471 NILIGRMLKQGDFDDAHKCLQKMMS 495



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 107/256 (41%), Gaps = 45/256 (17%)

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y  ++  L +  LVD+  +L+ +M    +  D+  ++ +I+ YC MG + +A++    + 
Sbjct: 160 YNELLTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLMINVYCKMGFVKEAKQFMCKMI 219

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK 401
             G  PD  +  + I  Y + + V+ A  ++ EM      P+ + +              
Sbjct: 220 QAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEM------PNRNEV-------------- 259

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
                  +N L+ GLC++ R+  A  LF ++      PNV TYT +I GLC    + KA 
Sbjct: 260 ------SYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLC-RKNVHKAM 312

Query: 462 DLLPDMEEK-------------IRECL-----KAIELLHKMAKRYVKPDEITVSILEELL 503
            LL +M E+               +C       A  LL  M +R + PD+ T     + L
Sbjct: 313 GLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFL 372

Query: 504 NKDENCHECMNLLPSF 519
            K     E   L  S 
Sbjct: 373 CKSNRVEEARRLFDSL 388


>gi|413955492|gb|AFW88141.1| hypothetical protein ZEAMMB73_138069 [Zea mays]
          Length = 1091

 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 121/496 (24%), Positives = 216/496 (43%), Gaps = 84/496 (16%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           +A+  +  M+    +P + +++ L+ A   K+     + L   +   G+ P+  S  I +
Sbjct: 189 EAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICI 248

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
               +     +A+  LG++      PDVVT   +I+ LC  G+ ++A  +F K  A D +
Sbjct: 249 RVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDAKAVFWKMKASDQK 308

Query: 190 PNVIP-------------------------------NVICYASIIDGLCKDGFVNKVRVL 218
           P+ +                                N++ Y +++D LC+ G V++   +
Sbjct: 309 PDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQVGRVDEALAV 368

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD 278
           F +MK +G+ P+ + YNSLI  +  A  ++        ALEL    +N  G       P+
Sbjct: 369 FDEMKEKGMSPEQYSYNSLISGFLKADMFD-------RALELFNH-MNACGP-----SPN 415

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
             ++   IN   K     KA + +  MKS+GI+PDV   ++++      GR+  A+++F 
Sbjct: 416 GYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFY 475

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398
            +++ G  PDT +Y  +I   SK  K +EA++ + +M+  G  P                
Sbjct: 476 ELKAMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVESGCVP---------------- 519

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
                 D+   N L+D L K  +   AW+LF KL     EP   TY  ++ GL  EG ++
Sbjct: 520 ------DVLALNSLIDTLYKGGKGNEAWQLFHKLKEMKIEPTNGTYNTLLSGLGREGKVK 573

Query: 459 KAYDLLPDMEEKIR-----------ECLK-------AIELLHKMAKRYVKPDEITVSILE 500
           +   LL +M   I            +CL        AI++L+ M ++   PD  + + + 
Sbjct: 574 EVMQLLEEMTRTIYPPNLITYNTVLDCLSKNGEVNCAIDMLYSMTEKGCAPDLSSYNTVM 633

Query: 501 ELLNKDENCHECMNLL 516
             L K+E   E   + 
Sbjct: 634 YGLIKEERLEEAFRMF 649



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 160/396 (40%), Gaps = 67/396 (16%)

Query: 121  DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
            D  S + LM    K  GV  +      I  +    +   L  LIR LC   K  EA  LF
Sbjct: 695  DKSSFHSLMEGILKKAGVEKSIEFAENIASRGILLNDFFLCPLIRHLCKHKKALEAHQLF 754

Query: 181  TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
             KF        V      Y S+I GL  +  ++    LF +MK  G  PD F YN ++  
Sbjct: 755  NKFKGL----GVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLIL-- 808

Query: 241  YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDV-LSYCSIINSLCKDVLVDKAK 299
                    DA G +       EE +    E+    +    ++Y +II+ L K   +++A 
Sbjct: 809  --------DAMGKSMRV----EEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQAI 856

Query: 300  ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            +L+ ++ S G  P    Y  L+DG    G++ DA  LF  +   GC P+ + YN L+N +
Sbjct: 857  DLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNCTIYNILLNGH 916

Query: 360  SKIEKVEEALSLYGEMISMGVRPD--NSCIL-----EAAEL------FRTLHNTKFELDL 406
                  E    L+ +M+  G+ PD  +  IL      A  L      FR LH    E DL
Sbjct: 917  RIAGNTENVCQLFEKMVEQGINPDIKSYTILIDTLCTAGRLNDGLCYFRQLHELGLEPDL 976

Query: 407  TVFNCLVDGLCKSWRLRSAWELF-----------------------------------KK 431
             V+N L+DGL KS R+  A  LF                                   ++
Sbjct: 977  IVYNLLIDGLGKSERIEEAVSLFNEMKKKGIIPNLYTYNSLILHLGKAGKAAEAAQMYEE 1036

Query: 432  LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            L R G +P+V TY  +I G  + G  + AY     M
Sbjct: 1037 LLRKGWKPSVFTYNALIRGYSVSGSTDNAYAAYGQM 1072



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 116/492 (23%), Positives = 212/492 (43%), Gaps = 74/492 (15%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           N+A   F+ +  M+  P   ++N+LL  L  +      + L E +      P+ ++ N +
Sbjct: 538 NEAWQLFHKLKEMKIEPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRTIYPPNLITYNTV 597

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF---TKFVA 185
           ++C  K   V+ A   L  +  K  +PD+ +   ++ GL  + +  EA  +F    K +A
Sbjct: 598 LDCLSKNGEVNCAIDMLYSMTEKGCAPDLSSYNTVMYGLIKEERLEEAFRMFCQMKKILA 657

Query: 186 FDCR------PNVIPNVI----------------------CYASIIDGLCKDGFVNKVRV 217
            D        P+ + N +                       + S+++G+ K   V K   
Sbjct: 658 PDYATLCTILPSFVKNGLMKEALHTVKEYILKAGCNVDKSSFHSLMEGILKKAGVEKSIE 717

Query: 218 LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277
              ++  RGI  + F    LIR  C              ALE H+ F    G LGV    
Sbjct: 718 FAENIASRGILLNDFFLCPLIRHLC----------KHKKALEAHQLFNKFKG-LGVSLKT 766

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
              SY S+I  L  + L+D A++LF +MK  G  PD   Y+ ++D      R+++  K+ 
Sbjct: 767 G--SYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRVEEMLKVQ 824

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP-------------DN 384
             +  +G      +YNT+I+   K +++E+A+ LY  ++S G  P              +
Sbjct: 825 KEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKS 884

Query: 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
             +++A  LF  +     E + T++N L++G   +    +  +LF+K+   G  P++ +Y
Sbjct: 885 GKMVDAENLFNEMLEYGCEPNCTIYNILLNGHRIAGNTENVCQLFEKMVEQGINPDIKSY 944

Query: 445 TVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLN 504
           T++I  LC  G              ++ + L     LH++    ++PD I  ++L + L 
Sbjct: 945 TILIDTLCTAG--------------RLNDGLCYFRQLHELG---LEPDLIVYNLLIDGLG 987

Query: 505 KDENCHECMNLL 516
           K E   E ++L 
Sbjct: 988 KSERIEEAVSLF 999



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 144/316 (45%), Gaps = 17/316 (5%)

Query: 74   FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
             F  M  +   P   ++N +L A+         + + + ++  G    +V+ N +++   
Sbjct: 788  LFTEMKRLGCGPDEFTYNLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLV 847

Query: 134  KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
            K   +  A      ++ + FSP   T G L+ GL   GK  +A  LF + + + C PN  
Sbjct: 848  KSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNCT 907

Query: 194  PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
                 Y  +++G    G    V  LF  M  +GI PD   Y  LI   C A    D    
Sbjct: 908  ----IYNILLNGHRIAGNTENVCQLFEKMVEQGINPDIKSYTILIDTLCTAGRLNDG--- 960

Query: 254  TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
                 +LHE        LG+   PD++ Y  +I+ L K   +++A  LF +MK +GIIP+
Sbjct: 961  LCYFRQLHE--------LGL--EPDLIVYNLLIDGLGKSERIEEAVSLFNEMKKKGIIPN 1010

Query: 314  VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
            +  Y+SLI      G+  +A +++  +  +G  P   +YN LI  YS     + A + YG
Sbjct: 1011 LYTYNSLILHLGKAGKAAEAAQMYEELLRKGWKPSVFTYNALIRGYSVSGSTDNAYAAYG 1070

Query: 374  EMISMGVRPDNSCILE 389
            +MI  G +P++S  ++
Sbjct: 1071 QMIVGGCQPNSSTYMQ 1086



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 169/409 (41%), Gaps = 78/409 (19%)

Query: 53   LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSER 112
            L+++L ++ K+ E     A   FN    +  +    S+NSL+  L  +    N I ++E 
Sbjct: 737  LIRHLCKHKKALE-----AHQLFNKFKGLGVSLKTGSYNSLIRGLVDE----NLIDIAED 787

Query: 113  LNT----IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
            L T    +G  PD  + N++++   K + V +       + RK +    VT   +I GL 
Sbjct: 788  LFTEMKRLGCGPDEFTYNLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLV 847

Query: 169  MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
               +  +A  L+   ++        P    Y  ++DGL K G +     LF +M   G  
Sbjct: 848  KSKRLEQAIDLYYNLMS----EGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCE 903

Query: 229  PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
            P+  +YN L+  +  A N E+                        +C             
Sbjct: 904  PNCTIYNILLNGHRIAGNTEN------------------------VC------------- 926

Query: 289  LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
                       +LF  M  +GI PD+  Y+ LID  C  GR++D    F  +   G  PD
Sbjct: 927  -----------QLFEKMVEQGINPDIKSYTILIDTLCTAGRLNDGLCYFRQLHELGLEPD 975

Query: 349  TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCILE---------AAELFR 395
               YN LI+   K E++EEA+SL+ EM   G+ P+    NS IL          AA+++ 
Sbjct: 976  LIVYNLLIDGLGKSERIEEAVSLFNEMKKKGIIPNLYTYNSLILHLGKAGKAAEAAQMYE 1035

Query: 396  TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
             L    ++  +  +N L+ G   S    +A+  + ++   G +PN  TY
Sbjct: 1036 ELLRKGWKPSVFTYNALIRGYSVSGSTDNAYAAYGQMIVGGCQPNSSTY 1084



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 110/517 (21%), Positives = 198/517 (38%), Gaps = 94/517 (18%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +++AL  F+ M     +P   S+NSL+        +   + L   +N  G  P+  +  +
Sbjct: 362 VDEALAVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVL 421

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
            +N + K      A      +  K   PDV     ++  L   G+   A  +F +  A  
Sbjct: 422 FINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFYELKAM- 480

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               V P+ I Y  +I    K    ++    F DM   G  PD    NSLI        +
Sbjct: 481 ---GVSPDTITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTL-----Y 532

Query: 248 EDAKGNTSAAL-----ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
           +  KGN +  L     E+  E  NG             +Y ++++ L ++  V +  +L 
Sbjct: 533 KGGKGNEAWQLFHKLKEMKIEPTNG-------------TYNTLLSGLGREGKVKEVMQLL 579

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
            +M      P+++ Y++++D     G ++ A  +  S+  +GC PD SSYNT++    K 
Sbjct: 580 EEMTRTIYPPNLITYNTVLDCLSKNGEVNCAIDMLYSMTEKGCAPDLSSYNTVMYGLIKE 639

Query: 363 EKVEEALSLYGEMISMGVRPDNSCI-------LEAAELFRTLHNTKF-------ELDLTV 408
           E++EEA  ++ +M  + + PD + +       ++   +   LH  K         +D + 
Sbjct: 640 ERLEEAFRMFCQMKKI-LAPDYATLCTILPSFVKNGLMKEALHTVKEYILKAGCNVDKSS 698

Query: 409 FNCLVDG-----------------------------------LCKSWRLRSAWELFKKLP 433
           F+ L++G                                   LCK  +   A +LF K  
Sbjct: 699 FHSLMEGILKKAGVEKSIEFAENIASRGILLNDFFLCPLIRHLCKHKKALEAHQLFNKFK 758

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDE 493
             G      +Y  +I GL  E  I+ A DL  +M+                 +    PDE
Sbjct: 759 GLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMK-----------------RLGCGPDE 801

Query: 494 ITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
            T +++ + + K     E + +      +  E + +T
Sbjct: 802 FTYNLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVT 838



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 96/412 (23%), Positives = 158/412 (38%), Gaps = 52/412 (12%)

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC--RPNVIPN 195
           V D       + ++V   +V T   +  G+ ++G      GL +  VA        +  N
Sbjct: 117 VGDMAQVFDLMQKQVVKTNVGTFATIFGGVGVEG------GLRSAPVALPVMREAGMSLN 170

Query: 196 VICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTS 255
              Y  +I  L K GF  +   ++  M   GI P    Y+ L+  +         K +  
Sbjct: 171 AYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVAF-------GKKRDVD 223

Query: 256 AALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV 315
             L L  E +   G       P+V SY   I  L +    D+A  +   M+  G  PDVV
Sbjct: 224 TVLWLLNE-MEARG-----VKPNVYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDVV 277

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
            ++ +I   C  GR+ DA+ +F  +++    PD  +Y TL++        +  + ++  M
Sbjct: 278 THTVIIQVLCDAGRLSDAKAVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAM 337

Query: 376 ISMGVRP---------DNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRL 422
           ++ G            D  C    + EA  +F  +       +   +N L+ G  K+   
Sbjct: 338 VADGYNDNIVSYTAVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGFLKADMF 397

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK--IRECLKAIEL 480
             A ELF  +   GP PN  T+ + I      G   KA      M+ K  + +   A  +
Sbjct: 398 DRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAV 457

Query: 481 LHK--------MAKRY--------VKPDEITVSILEELLNKDENCHECMNLL 516
           L+         MAKR         V PD IT +++ +  +K     E MN  
Sbjct: 458 LYSLAGSGRLGMAKRVFYELKAMGVSPDTITYTMMIKCCSKASKADEAMNFF 509



 Score = 43.5 bits (101), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 4/164 (2%)

Query: 74   FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
             F  M+     P + S+  L+  L       + +C   +L+ +GL PD +  N+L++   
Sbjct: 928  LFEKMVEQGINPDIKSYTILIDTLCTAGRLNDGLCYFRQLHELGLEPDLIVYNLLIDGLG 987

Query: 134  KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
            K   + +A      + +K   P++ T   LI  L   GK  EA+ ++ + +    R    
Sbjct: 988  KSERIEEAVSLFNEMKKKGIIPNLYTYNSLILHLGKAGKAAEAAQMYEELL----RKGWK 1043

Query: 194  PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            P+V  Y ++I G    G  +     +  M   G  P++  Y  L
Sbjct: 1044 PSVFTYNALIRGYSVSGSTDNAYAAYGQMIVGGCQPNSSTYMQL 1087


>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
 gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
          Length = 948

 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 140/505 (27%), Positives = 218/505 (43%), Gaps = 76/505 (15%)

Query: 53  LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLS 110
           L+  LSEN++     +N+A+     M  M   P + +FN ++  L  AG+      I  +
Sbjct: 241 LIHALSENNR-----VNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCKAGR------IHEA 289

Query: 111 ERLNTIGLLPDFVS----LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166
            +L+   LL DF +       LM+  C+M  V +A      +L K+ +P+ V    LI G
Sbjct: 290 AKLHDRMLLRDFTADALIQGYLMHGLCRMGKVDEARA----MLSKIPNPNTVLYNTLING 345

Query: 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
             + G+F EA  L  K +         P+   +  +IDGLCK G++        +M  +G
Sbjct: 346 YVVSGRFEEAKDLLYKNMVI---AGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKG 402

Query: 227 IYPDAFVYNSLIRVYCCAVNWEDAKG--NTSAALELHEEFVNGNGELGVICH-------- 276
             P+   Y  LI  +C   ++E+A    N+ +A  L    V  N  +G +C         
Sbjct: 403 FEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDAL 462

Query: 277 ------------PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
                       PD+ ++ S+I  LCK+  +++A  L+ DM   G+I + V Y++LI  +
Sbjct: 463 QMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAF 522

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD- 383
             +  I  A KL   +   GC  D  +YN LI +  K    E+ L L  +M    + P  
Sbjct: 523 LRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSI 582

Query: 384 NSC------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
           NSC            + +A +  R +       D+  +N L++GLCK  R + A  LF  
Sbjct: 583 NSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNG 642

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKP 491
           L   G  P+ VTY  +I   C EG       L  D          A +LL K       P
Sbjct: 643 LQAKGIHPDAVTYNTLISRYCYEG-------LFND----------ACQLLFKGVSNGFIP 685

Query: 492 DEITVSILEELLNKDENCHECMNLL 516
           +EIT SIL     K+ +  E   +L
Sbjct: 686 NEITWSILINYFVKNNSDSEQFTIL 710



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 117/445 (26%), Positives = 198/445 (44%), Gaps = 51/445 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G +P+ +   +L++   +   V++A   L  +      PDV T   +I GLC  G+  EA
Sbjct: 230 GCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEA 289

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
           + L  + +  D       + +    ++ GLC+ G V++ R +   +      P+  +YN+
Sbjct: 290 AKLHDRMLLRD----FTADALIQGYLMHGLCRMGKVDEARAMLSKIPN----PNTVLYNT 341

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI  Y  +  +E+AK        L++  V    E      PD  ++  +I+ LCK   + 
Sbjct: 342 LINGYVVSGRFEEAKD------LLYKNMVIAGFE------PDAFTFNIMIDGLCKKGYLV 389

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A E   +M  +G  P+V+ Y+ LIDG+C  G  ++A K+  S+ ++G   +T  YN LI
Sbjct: 390 SALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLI 449

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD----NSCIL---------EAAELFRTLHNTKFE 403
            +  K  K+++AL +YGEM S G +PD    NS I          EA  L+R +      
Sbjct: 450 GALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVI 509

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            +   +N L+    +   ++ A +L  ++   G   + +TY  +I  LC  G  EK   L
Sbjct: 510 ANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGL 569

Query: 464 LPDM--EE---KIREC-------------LKAIELLHKMAKRYVKPDEITVSILEELLNK 505
           +  M  EE    I  C               A++ L  M +R + PD +T + L   L K
Sbjct: 570 IEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCK 629

Query: 506 DENCHECMNLLPSFLSRNQEESKLT 530
                E +NL     ++      +T
Sbjct: 630 MGRFQEALNLFNGLQAKGIHPDAVT 654



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 115/261 (44%), Gaps = 37/261 (14%)

Query: 272 GVIC-HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
           GV C  P   SY  ++  L        A  +F DM SRGI P V  +  ++  +C++  +
Sbjct: 157 GVYCFEPTFKSYNVVLEILVAGNCPKVAPNVFYDMLSRGISPTVYTFGVVMKAFCMVNEV 216

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC---- 386
           D A  L   +   GC+P++  Y  LI++ S+  +V EA+ L  EM  MG  PD       
Sbjct: 217 DSACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFLMGCEPDVQTFNDV 276

Query: 387 ---------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
                    I EAA+L   +    F  D  +   L+ GLC+  ++  A  +  K+P    
Sbjct: 277 IHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMGKVDEARAMLSKIPN--- 333

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLL----------PDMEE---------KIRECLKAI 478
            PN V Y  +I G  + G  E+A DLL          PD            K    + A+
Sbjct: 334 -PNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSAL 392

Query: 479 ELLHKMAKRYVKPDEITVSIL 499
           E L +M K+  +P+ IT +IL
Sbjct: 393 EFLDEMVKKGFEPNVITYTIL 413



 Score = 42.7 bits (99), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 68/175 (38%), Gaps = 14/175 (8%)

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            RG I    VY  LID    +G      KL   ++ EGC+   S +  ++  Y K     
Sbjct: 87  QRGYIHSFHVYYLLIDKLGNVGEFKMIDKLLKQMKDEGCVFKESLFILIMRYYGKAGLPG 146

Query: 367 EALSLYGEM--------------ISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCL 412
           +A  L  +M              + + +    +C   A  +F  + +      +  F  +
Sbjct: 147 QATRLLLDMWGVYCFEPTFKSYNVVLEILVAGNCPKVAPNVFYDMLSRGISPTVYTFGVV 206

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +   C    + SA  L + + ++G  PN + Y ++I  L     + +A  LL +M
Sbjct: 207 MKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEM 261


>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
 gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
          Length = 628

 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 109/382 (28%), Positives = 188/382 (49%), Gaps = 39/382 (10%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L +++   G  P+ V+   L++  CK     DA   + R+LR    PD+VT   LI GLC
Sbjct: 32  LLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLC 91

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
           M  +  +A  +  + V    R    PN I Y++++   C+   +++ R L  +M  RG  
Sbjct: 92  MANRMDDAGLVLQELV----RNGFAPNHITYSTLVIWNCRRRRLDQARGLIREMILRGSV 147

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
            +  VY   I  +C      +A+  +S       E  +G+  +     PDV++Y + I+ 
Sbjct: 148 CNLVVYIDCIFGFC------EARCQSS-----RYECRDGDEMIESGRIPDVVTYNTFISG 196

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           LCK   +DK  E+  +M   GI PDVV + S+I G C   RIDDA ++F  +   GC+PD
Sbjct: 197 LCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPD 256

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEA----AELFRTLHNTKFEL 404
           + +Y+ ++++ S+  +++    +   M +M       C++E     A +     + KF L
Sbjct: 257 SLTYSIMLDNLSRANRLDTVDEVLEHMQAMKA----GCVMEVYTHNAFIGALCRSGKFPL 312

Query: 405 ---------------DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG-PEPNVVTYTVMI 448
                          +L  +N ++DGLCKS  +  AW+L +K+   G  +P+V+ +  +I
Sbjct: 313 AKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLI 372

Query: 449 CGLCIEGGIEKAYDLLPDMEEK 470
            G C  G + +A+ LL +M+ K
Sbjct: 373 SGFCKAGRLSQAHQLLIEMKAK 394



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 111/469 (23%), Positives = 201/469 (42%), Gaps = 79/469 (16%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           MI     P + ++N+ +  L         + + E ++  G+ PD V+   +++  CK   
Sbjct: 178 MIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANR 237

Query: 138 VSDAFVALGRILRKVFSPDVVTL----------------------------GCL------ 163
           + DAF     +L +   PD +T                             GC+      
Sbjct: 238 IDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTH 297

Query: 164 ---IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFL 220
              I  LC  GKF  A  +    +        +PN++ Y  +IDGLCK G V+    L  
Sbjct: 298 NAFIGALCRSGKFPLAKNILLGMI----ESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSR 353

Query: 221 DMKGRGI-YPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDV 279
            M   G   PD   +N+LI  +C A       G  S A +L  E    N     IC PDV
Sbjct: 354 KMLDSGCCKPDVIFFNTLISGFCKA-------GRLSQAHQLLIEMKAKN-----ICVPDV 401

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           ++Y ++I+   K   + +AK L  +M++ G  P+VV Y++LI+GY   G  ++A  LF  
Sbjct: 402 VTYNTLIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDE 461

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN 399
           + ++GC PD  +YNT+++++SK   + +A  +Y ++ +                      
Sbjct: 462 MSAKGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQLKN--------------------KT 501

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC-IEGGIE 458
           +    D   +  L+DG C++        L +++   G   +  TY V+I  L   E    
Sbjct: 502 SYCSPDAITYRILIDGYCRAEDTEQGLTLLQEMTARGWSCDSYTYNVLIAKLAETEEVPS 561

Query: 459 KAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITV--SILEELLNK 505
           KA  +   M ++  +C+ +  + + + + +++  ++    S+++E+  K
Sbjct: 562 KALAVYQQMLDQ--DCVPSASIFNSLVRLFLRTGDVNSARSMVQEMNEK 608



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 144/329 (43%), Gaps = 43/329 (13%)

Query: 153 FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFV 212
           +   VVT   LI GLC  G    A  L  K     C PNV+     Y ++IDGLCK    
Sbjct: 6   YDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVT----YTALIDGLCKARRP 61

Query: 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
           +        M   G  PD   YNSLI   C A   +DA       L L E   NG     
Sbjct: 62  HDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDA------GLVLQELVRNGFA--- 112

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
               P+ ++Y +++   C+   +D+A+ L  +M  RG + ++VVY   I G+C   R   
Sbjct: 113 ----PNHITYSTLVIWNCRRRRLDQARGLIREMILRGSVCNLVVYIDCIFGFC-EARCQS 167

Query: 333 AR---KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE 389
           +R   +    +   G IPD  +YNT I+   K  K+++ L +  EM   G+ PD      
Sbjct: 168 SRYECRDGDEMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPD------ 221

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
                           +  F  ++ GLCK+ R+  A+++FK +   G  P+ +TY++M+ 
Sbjct: 222 ----------------VVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLD 265

Query: 450 GLCIEGGIEKAYDLLPDMEEKIRECLKAI 478
            L     ++   ++L  M+     C+  +
Sbjct: 266 NLSRANRLDTVDEVLEHMQAMKAGCVMEV 294



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 137/311 (44%), Gaps = 18/311 (5%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL-PDFVSLNILMNCFCKMI 136
           MI     P + S+N ++  L       +   LS ++   G   PD +  N L++ FCK  
Sbjct: 320 MIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAG 379

Query: 137 GVSDAFVALGRILRK-VFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPN 195
            +S A   L  +  K +  PDVVT   LI G    G   +A  L  +  A  C+PNV+  
Sbjct: 380 RLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVT- 438

Query: 196 VICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTS 255
              YA++I+G  K G   +   LF +M  +G +PD   YN+++  +  A       G  S
Sbjct: 439 ---YAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKA-------GMMS 488

Query: 256 AALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV 315
            A  ++++  N        C PD ++Y  +I+  C+    ++   L  +M +RG   D  
Sbjct: 489 KAEGVYQQLKNKTS----YCSPDAITYRILIDGYCRAEDTEQGLTLLQEMTARGWSCDSY 544

Query: 316 VYSSLIDGYCLMGRI-DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
            Y+ LI        +   A  ++  +  + C+P  S +N+L+  + +   V  A S+  E
Sbjct: 545 TYNVLIAKLAETEEVPSKALAVYQQMLDQDCVPSASIFNSLVRLFLRTGDVNSARSMVQE 604

Query: 375 MISMGVRPDNS 385
           M   G   D S
Sbjct: 605 MNEKGHLVDAS 615



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 123/277 (44%), Gaps = 67/277 (24%)

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
           V++Y ++I+ LCK   +D A+ L   M   G  P+VV Y++LIDG C   R  DA +   
Sbjct: 10  VVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVK 69

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---------SC--- 386
            +   GC PD  +YN+LI+      ++++A  +  E++  G  P++         +C   
Sbjct: 70  RMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYSTLVIWNCRRR 129

Query: 387 -ILEAAELFRTL------------------------HNTKFEL-------------DLTV 408
            + +A  L R +                         ++++E              D+  
Sbjct: 130 RLDQARGLIREMILRGSVCNLVVYIDCIFGFCEARCQSSRYECRDGDEMIESGRIPDVVT 189

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +N  + GLCK+ +L    E+ +++ R G  P+VVT+  +I GLC    I+ A+ +   M 
Sbjct: 190 YNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQVFKGML 249

Query: 469 EKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505
           E  R C+               PD +T SI+ + L++
Sbjct: 250 E--RGCV---------------PDSLTYSIMLDNLSR 269



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 22/163 (13%)

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M + G    VV Y++LIDG C  G +D A+ L   +   GC P+  +Y  LI+   K  +
Sbjct: 1   MAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARR 60

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
             +A+     M+  G  P                      DL  +N L+ GLC + R+  
Sbjct: 61  PHDAIQTVKRMLRSGCEP----------------------DLVTYNSLIHGLCMANRMDD 98

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           A  + ++L R G  PN +TY+ ++   C    +++A  L+ +M
Sbjct: 99  AGLVLQELVRNGFAPNHITYSTLVIWNCRRRRLDQARGLIREM 141


>gi|414878623|tpg|DAA55754.1| TPA: hypothetical protein ZEAMMB73_281441 [Zea mays]
          Length = 891

 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 114/411 (27%), Positives = 188/411 (45%), Gaps = 56/411 (13%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           ++   +G+  D V  NI M+ +CK+  +++A   L  ++     PD +   CLI G C++
Sbjct: 303 QKFRDLGVHLDGVLYNIAMDAYCKLGNMNEAVKLLNEMMAGSLVPDKIHYTCLINGYCLK 362

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G+   A  +F + +    + N+ P+V+ Y  +  G  ++G V KV  +   M  +G+ P+
Sbjct: 363 GETENAWQVFEEML----KANIKPDVVTYNILASGYSRNGLVMKVFDILEHMMDQGLEPN 418

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALE--------LHEEFVNGNGELGVICHP----- 277
           +  Y   I  +C   N  +A+   +   E        L+   V G    G   H      
Sbjct: 419 SLTYGIAIAGFCRGGNLSEAEVLFNIVEERGIDNINVLYGSMVCGYLHSGWTDHAYMLFL 478

Query: 278 ---------DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                    D LS   +IN LC+D  V +A  +   M  + ++PDV+ YS LI  YC   
Sbjct: 479 RVAKQGNMVDRLSCSKLINGLCRDEKVGEASTVCKMMLEKNVVPDVISYSKLISAYCQTR 538

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----- 383
            + +AR  F  +   G + D   Y  L+N Y K+ +++EA  L+ +MI++G++PD     
Sbjct: 539 DMHNARLWFHDMVERG-LSDVIVYTVLMNGYCKVGRLQEACELFVQMINLGIKPDVVAYT 597

Query: 384 ---NSCILEAAE-------------LFRTLH--------NTKFELDLTVFNCLVDGLCKS 419
              +  + E  +               RT H        + + E D+T +  L+DG CK+
Sbjct: 598 VLLDGHLKETLQQGWQGIAKERRTFFLRTKHKVLLNSMKDMEIEPDVTCYTVLIDGRCKA 657

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
             L  A  LF ++   G  P+V TYT +I G C +G I KA DL  +M  K
Sbjct: 658 EYLEEARGLFDEMLAKGLIPDVHTYTALINGYCSQGEIAKAEDLFQEMIAK 708



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 155/368 (42%), Gaps = 69/368 (18%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E  +A   F  M+     P + ++N L    +     +    + E +   GL P+ ++  
Sbjct: 364 ETENAWQVFEEMLKANIKPDVVTYNILASGYSRNGLVMKVFDILEHMMDQGLEPNSLTYG 423

Query: 127 ILMNCFCKMIGVSDA-----------------------------------FVALGRILRK 151
           I +  FC+   +S+A                                   ++   R+ ++
Sbjct: 424 IAIAGFCRGGNLSEAEVLFNIVEERGIDNINVLYGSMVCGYLHSGWTDHAYMLFLRVAKQ 483

Query: 152 VFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF 211
               D ++   LI GLC   K  EAS +    +      NV+P+VI Y+ +I   C+   
Sbjct: 484 GNMVDRLSCSKLINGLCRDEKVGEASTVCKMML----EKNVVPDVISYSKLISAYCQTRD 539

Query: 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGEL 271
           ++  R+ F DM  RG+  D  VY  L+  YC         G    A EL  + +N    L
Sbjct: 540 MHNARLWFHDMVERGL-SDVIVYTVLMNGYC-------KVGRLQEACELFVQMIN----L 587

Query: 272 GVICHPDVLSYCSIINSLCKDVLVD----------------KAKELFLDMKSRGIIPDVV 315
           G+   PDV++Y  +++   K+ L                  K K L   MK   I PDV 
Sbjct: 588 GI--KPDVVAYTVLLDGHLKETLQQGWQGIAKERRTFFLRTKHKVLLNSMKDMEIEPDVT 645

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
            Y+ LIDG C    +++AR LF  + ++G IPD  +Y  LIN Y    ++ +A  L+ EM
Sbjct: 646 CYTVLIDGRCKAEYLEEARGLFDEMLAKGLIPDVHTYTALINGYCSQGEIAKAEDLFQEM 705

Query: 376 ISMGVRPD 383
           I+ G++PD
Sbjct: 706 IAKGMKPD 713



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 115/472 (24%), Positives = 193/472 (40%), Gaps = 78/472 (16%)

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           ++ N++++  CK + + +A   L    R   +PD+ +   LI   C  G   +A      
Sbjct: 210 MAYNMVIDGLCKEMKLKEAEKVLEIKTRHGSAPDLYSYSYLIHSHCKMGNLEKAWYHVED 269

Query: 183 FVAFDCRPNVIPNVICY--ASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            V+     N      CY  A ++  L K G V++V V F   +  G++ D  +YN  +  
Sbjct: 270 MVSHGIEIN------CYIVAYLLQCLRKLGMVSEVIVHFQKFRDLGVHLDGVLYNIAMDA 323

Query: 241 YC----------------------------CAVNWEDAKGNTSAALELHEEFVNGNGELG 272
           YC                            C +N    KG T  A ++ EE +  N +  
Sbjct: 324 YCKLGNMNEAVKLLNEMMAGSLVPDKIHYTCLINGYCLKGETENAWQVFEEMLKANIKPD 383

Query: 273 VICH-----------------------------PDVLSYCSIINSLCKDVLVDKAKELFL 303
           V+ +                             P+ L+Y   I   C+   + +A+ LF 
Sbjct: 384 VVTYNILASGYSRNGLVMKVFDILEHMMDQGLEPNSLTYGIAIAGFCRGGNLSEAEVLFN 443

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            ++ RGI    V+Y S++ GY   G  D A  LF+ +  +G + D  S + LIN   + E
Sbjct: 444 IVEERGIDNINVLYGSMVCGYLHSGWTDHAYMLFLRVAKQGNMVDRLSCSKLINGLCRDE 503

Query: 364 KVEEALSLYGEMISMGVRPD---NSCILEAAELFRTLHNTKFEL---------DLTVFNC 411
           KV EA ++   M+   V PD    S ++ A    R +HN +            D+ V+  
Sbjct: 504 KVGEASTVCKMMLEKNVVPDVISYSKLISAYCQTRDMHNARLWFHDMVERGLSDVIVYTV 563

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI 471
           L++G CK  RL+ A ELF ++   G +P+VV YTV++ G   E  +++ +  +       
Sbjct: 564 LMNGYCKVGRLQEACELFVQMINLGIKPDVVAYTVLLDGHLKE-TLQQGWQGIAKERRTF 622

Query: 472 RECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
               K   LL+ M    ++PD    ++L +   K E   E   L    L++ 
Sbjct: 623 FLRTKHKVLLNSMKDMEIEPDVTCYTVLIDGRCKAEYLEEARGLFDEMLAKG 674



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 118/251 (47%), Gaps = 12/251 (4%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           R+   G + D +S + L+N  C+   V +A      +L K   PDV++   LI   C   
Sbjct: 479 RVAKQGNMVDRLSCSKLINGLCRDEKVGEASTVCKMMLEKNVVPDVISYSKLISAYCQTR 538

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
               A   F   V        + +VI Y  +++G CK G + +   LF+ M   GI PD 
Sbjct: 539 DMHNARLWFHDMV-----ERGLSDVIVYTVLMNGYCKVGRLQEACELFVQMINLGIKPDV 593

Query: 232 FVYNSLIRVY---CCAVNWED-AKGNTSAALEL-HEEFVNGNGELGVICHPDVLSYCSII 286
             Y  L+  +        W+  AK   +  L   H+  +N   ++ +   PDV  Y  +I
Sbjct: 594 VAYTVLLDGHLKETLQQGWQGIAKERRTFFLRTKHKVLLNSMKDMEI--EPDVTCYTVLI 651

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           +  CK   +++A+ LF +M ++G+IPDV  Y++LI+GYC  G I  A  LF  + ++G  
Sbjct: 652 DGRCKAEYLEEARGLFDEMLAKGLIPDVHTYTALINGYCSQGEIAKAEDLFQEMIAKGMK 711

Query: 347 PDTSSYNTLIN 357
           PD  S   +I 
Sbjct: 712 PDIWSMMRVIG 722



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 95/395 (24%), Positives = 160/395 (40%), Gaps = 69/395 (17%)

Query: 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD--CRPNVIPNVICYASIIDGLCKDGFVN 213
           DV      I GLC  GKF  A  +  ++       +  V    + Y  +IDGLCK+  + 
Sbjct: 167 DVHGFSSFIIGLCDCGKFDLAYNMVRRYAVLQEISQERVPIEAMAYNMVIDGLCKEMKLK 226

Query: 214 KVRVLFLDMKGR-GIYPDAFVYNSLIRVYCCAVN----WEDAKGNTSAALELH------- 261
           +   + L++K R G  PD + Y+ LI  +C   N    W   +   S  +E++       
Sbjct: 227 EAEKV-LEIKTRHGSAPDLYSYSYLIHSHCKMGNLEKAWYHVEDMVSHGIEINCYIVAYL 285

Query: 262 -----------EEFVNGNG--ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
                      E  V+     +LGV  H D + Y   +++ CK   +++A +L  +M + 
Sbjct: 286 LQCLRKLGMVSEVIVHFQKFRDLGV--HLDGVLYNIAMDAYCKLGNMNEAVKLLNEMMAG 343

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
            ++PD + Y+ LI+GYCL G  ++A ++F  +      PD  +YN L + YS+   V + 
Sbjct: 344 SLVPDKIHYTCLINGYCLKGETENAWQVFEEMLKANIKPDVVTYNILASGYSRNGLVMKV 403

Query: 369 LSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
             +   M+  G+ P++                        +   + G C+   L  A  L
Sbjct: 404 FDILEHMMDQGLEPNS----------------------LTYGIAIAGFCRGGNLSEAEVL 441

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRY 488
           F  +   G +   V Y  M+CG    G  + AY                  L  ++AK+ 
Sbjct: 442 FNIVEERGIDNINVLYGSMVCGYLHSGWTDHAY-----------------MLFLRVAKQG 484

Query: 489 VKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
              D ++ S L   L +DE   E   +    L +N
Sbjct: 485 NMVDRLSCSKLINGLCRDEKVGEASTVCKMMLEKN 519



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 76/366 (20%), Positives = 132/366 (36%), Gaps = 90/366 (24%)

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD 278
           F D    G + D   Y+ +I++   +             + L  E + G G  G    P+
Sbjct: 92  FKDTHSLGFHHDFSTYSEIIQILSHSFQ-------GKMLVSLFREILLGTGSGG----PE 140

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID------- 331
           +L     +   C    V         M   G+  DV  +SS I G C  G+ D       
Sbjct: 141 ILPLIDHLRKTCATSHVG--------MIEMGVKLDVHGFSSFIIGLCDCGKFDLAYNMVR 192

Query: 332 ----------------------------------DARKLFVSIESEGCIPDTSSYNTLIN 357
                                             +A K+       G  PD  SY+ LI+
Sbjct: 193 RYAVLQEISQERVPIEAMAYNMVIDGLCKEMKLKEAEKVLEIKTRHGSAPDLYSYSYLIH 252

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL--------HNTKF-----EL 404
           S+ K+  +E+A     +M+S G+  +   +    +  R L        H  KF      L
Sbjct: 253 SHCKMGNLEKAWYHVEDMVSHGIEINCYIVAYLLQCLRKLGMVSEVIVHFQKFRDLGVHL 312

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           D  ++N  +D  CK   +  A +L  ++      P+ + YT +I G C++G  E A+   
Sbjct: 313 DGVLYNIAMDAYCKLGNMNEAVKLLNEMMAGSLVPDKIHYTCLINGYCLKGETENAW--- 369

Query: 465 PDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQ 524
                         ++  +M K  +KPD +T +IL    +++    +  ++L   + +  
Sbjct: 370 --------------QVFEEMLKANIKPDVVTYNILASGYSRNGLVMKVFDILEHMMDQGL 415

Query: 525 EESKLT 530
           E + LT
Sbjct: 416 EPNSLT 421


>gi|115438490|ref|NP_001043552.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|21104680|dbj|BAB93270.1| fertility restorer homologue-like [Oryza sativa Japonica Group]
 gi|113533083|dbj|BAF05466.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|125571150|gb|EAZ12665.1| hypothetical protein OsJ_02580 [Oryza sativa Japonica Group]
 gi|215767882|dbj|BAH00111.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 800

 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 117/443 (26%), Positives = 200/443 (45%), Gaps = 48/443 (10%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DA+  F  M      P   ++N L+  L  ++     + L E++N  G+ P  V+ + L+
Sbjct: 370 DAVSLFKEMAD-SGIPDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLL 428

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
            C+C    + +A      +  K F+P+VVT   L++G   +  F +A  L  +      +
Sbjct: 429 LCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMK----Q 484

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
             V  N   Y ++I+GLC  G V +V  +    +  G  P A  YNS+I  +  A     
Sbjct: 485 NGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKA----- 539

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
             G   +A  ++++             P++++Y S I+  CK    D A ++  D++ +G
Sbjct: 540 --GMMGSAFAVYQQMCAKG------IPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKG 591

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
           + PD+  Y+SLI G+C  G +  A ++ V +  +G +P+ S YN+ I  Y  ++ +EEAL
Sbjct: 592 LRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEAL 651

Query: 370 SLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL-------------DLTVFNCLVDGL 416
            LY +MI  G+  D +      + F    N  F L             D   F  L  GL
Sbjct: 652 RLYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGL 711

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLK 476
           C++  +  A +L  ++ R    PNV+ Y ++I G    G +++A+ L  +M E       
Sbjct: 712 CRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLE------- 764

Query: 477 AIELLHKMAKRYVKPDEITVSIL 499
                     R + PD+ T  IL
Sbjct: 765 ----------RKIMPDDTTYDIL 777



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 153/347 (44%), Gaps = 40/347 (11%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +++A+  +  M     TP + ++ +L+     K  +     L   +   G+  +  + N 
Sbjct: 437 MDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNT 496

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N  C +  V +    L R   + F P  +T   +I G    G    A  ++ +     
Sbjct: 497 LINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQM---- 552

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C   + PN++ Y S IDG CK    +    +  D++ +G+ PD   YNSLI  +C     
Sbjct: 553 CAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIFGFC----- 607

Query: 248 EDAKGNTSAALE---------------LHEEFVNGNGELGVICHP--------------D 278
              +GN S AL+               ++  F+ G   L ++                 D
Sbjct: 608 --QEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLD 665

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
             +Y ++I+   KD  V  A +L+ +M ++G IPD + +++L  G C  G IDDARKL  
Sbjct: 666 TATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLD 725

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
            +      P+   YN LIN Y +  K++EA  L+ EM+   + PD++
Sbjct: 726 EMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDT 772



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 95/427 (22%), Positives = 181/427 (42%), Gaps = 66/427 (15%)

Query: 90  FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149
           F+ ++ A   +  Y + + L + +    + PD    ++ +   CK+   + A + L ++ 
Sbjct: 180 FDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQ 239

Query: 150 RKVFSP---------DVVTLG--------------------------CLIRGLCMQGKFT 174
              F P         DV+  G                           L+ G C+Q +  
Sbjct: 240 DAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVR 299

Query: 175 EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVY 234
           +A  +F + +    R  ++P  + Y  +I G  ++G   K   L   M+  G+ P    +
Sbjct: 300 KALDIFEETL----RDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEF 355

Query: 235 NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294
           N +I+       W+D       A+ L +E  +     G+   PD  +Y  +I+ LC+   
Sbjct: 356 NMVIKGLLNDKLWKD-------AVSLFKEMADS----GI---PDAFTYNILIHWLCQRRK 401

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           + +A  L+  M   G+ P +V Y SL+  YC+ G +D+A KL+  +  +G  P+  +Y T
Sbjct: 402 IREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTT 461

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNS---------CIL----EAAELFRTLHNTK 401
           L+  +      ++A +L  EM   GV  ++          C++    E  E+ +      
Sbjct: 462 LMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEG 521

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
           F      +N +++G  K+  + SA+ +++++   G  PN+VTYT  I G C     + A 
Sbjct: 522 FVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLAL 581

Query: 462 DLLPDME 468
            +L D+ 
Sbjct: 582 KMLNDVR 588



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 147/332 (44%), Gaps = 31/332 (9%)

Query: 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV 215
           D      ++R    +G + +A  LF +  A +  P+     +C  +I   LCK    N+ 
Sbjct: 176 DAWMFDVVMRACFKEGMYDDAVRLFDEMPASEIEPD---QRVCSVAIA-SLCKLRDANRA 231

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
            ++   M+  G  P  F +NS++ V           G    AL + +E +    ++ V+ 
Sbjct: 232 LLVLRKMQDAGFVPWDFTFNSVVDVLV-------KGGRMEEALHIKDELLATGKKMSVVL 284

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
                   ++++  C    V KA ++F +    G++P  V Y+ LI G    G  + A +
Sbjct: 285 A------TTLMHGYCLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYE 338

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------ 383
           L   +   G +P T+ +N +I      +  ++A+SL+ EM   G+ PD            
Sbjct: 339 LCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGI-PDAFTYNILIHWLC 397

Query: 384 -NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
               I EA  L+  ++ T  +  +  ++ L+   C +  +  A +L+ ++P  G  PNVV
Sbjct: 398 QRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVV 457

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEEKIREC 474
           TYT ++ G   +   +KAY LL +M++    C
Sbjct: 458 TYTTLMKGHINKAAFDKAYALLAEMKQNGVSC 489



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 126/276 (45%), Gaps = 17/276 (6%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P   ++NS++          +   + +++   G+ P+ V+    ++ +CK      A   
Sbjct: 524 PTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKM 583

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           L  +  K   PD+     LI G C +G  + A     + +    +  ++PN+  Y S I 
Sbjct: 584 LNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHA----LQVLVLMLKDGLLPNISVYNSFIT 639

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           G      + +   L+  M   GI  D   Y +LI  +          GN + AL+L+ E 
Sbjct: 640 GYKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGF-------SKDGNVTFALKLYSEM 692

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           V   G +     PD +++ ++ + LC++  +D A++L  +M    I P+V++Y+ LI+GY
Sbjct: 693 V-AKGNI-----PDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGY 746

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
              G++ +A +L   +     +PD ++Y+ L+   S
Sbjct: 747 LRNGKLQEAFRLHDEMLERKIMPDDTTYDILVGMKS 782



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 130/313 (41%), Gaps = 56/313 (17%)

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP-DVL 280
           M+ RG+ PDA     L+ V         A+  ++A        + G G       P D  
Sbjct: 133 MEARGVTPDAKSRTDLLAV--------TARSASAADALALLAEMRGKG------RPLDAW 178

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
            +  ++ +  K+ + D A  LF +M +  I PD  V S  I   C +   + A  +   +
Sbjct: 179 MFDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKM 238

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNT 400
           +  G +P   ++N++++   K  ++EEAL +  E+++ G +                   
Sbjct: 239 QDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKK------------------- 279

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
              + + +   L+ G C    +R A ++F++  R G  P  VTYTV+I G   EG  EKA
Sbjct: 280 ---MSVVLATTLMHGYCLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKA 336

Query: 461 YDLLPDMEEK------------IRECLK------AIELLHKMAKRYVKPDEITVSILEEL 502
           Y+L   M +             I+  L       A+ L  +MA   + PD  T +IL   
Sbjct: 337 YELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGI-PDAFTYNILIHW 395

Query: 503 LNKDENCHECMNL 515
           L +     E +NL
Sbjct: 396 LCQRRKIREALNL 408



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 4/174 (2%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  ++ AL     M+     P +  +NS +      K     + L E++   G+  D  +
Sbjct: 609 EGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLDTAT 668

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
              L++ F K   V+ A      ++ K   PD +T   L  GLC  G   +A  L  +  
Sbjct: 669 YTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMN 728

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
             D R    PNV+ Y  +I+G  ++G + +   L  +M  R I PD   Y+ L+
Sbjct: 729 RLDIR----PNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTYDILV 778


>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
          Length = 897

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/454 (25%), Positives = 200/454 (44%), Gaps = 69/454 (15%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           + +A    N M+ M     + +F+ ++  + G         L +R+ T G +P  ++   
Sbjct: 210 VTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGF 269

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+   C++    +A   LGR    V   +VV    +I G   +GK  EA+ L+       
Sbjct: 270 LLQGLCRVRQADEARAMLGR----VPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKG 325

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C+P+       Y+ ++ GLCK G +     L  +M+ +G  P+   Y  ++  +C    W
Sbjct: 326 CQPDAH----TYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMW 381

Query: 248 EDAKG----NTSAALELHEEFVNG-----------NGELGVI-------CHPDVLSYCSI 285
           +D +      ++  L L+ +  NG           +  +G+I       C+PD+ SY +I
Sbjct: 382 DDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTI 441

Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
           I  LC +  +++A+ +F ++   G++ + + Y+++I      GR  DA +L   +   GC
Sbjct: 442 IYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGC 501

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELD 405
             D  SYN LI +  K   V+ +L L  EM   G++P+N                     
Sbjct: 502 SLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNN--------------------- 540

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
              +N L+  LCK  R+R A EL K++   G  P++VTY  +I GLC  G +        
Sbjct: 541 -VSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMH------- 592

Query: 466 DMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                      A+ LL K+    V PD IT +IL
Sbjct: 593 ----------AALNLLEKLHNENVHPDIITYNIL 616



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 128/512 (25%), Positives = 223/512 (43%), Gaps = 57/512 (11%)

Query: 53  LLKYLSENSKSGEVELNDALCFFNYMIH---MQPTPFMPSFNSLLGALAGKKYYVNFICL 109
           LL+    ++  G +        +  M+H   + PT F  +F     AL         + L
Sbjct: 124 LLQRRPVSASQGGLPRARRFALYRRMVHRDRVPPTTF--TFGVAARALCRLGRADEALAL 181

Query: 110 SERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCM 169
              +   G +PD V    +++  C   GV++A   L  +L    + DV T   ++RG+C 
Sbjct: 182 LRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCG 241

Query: 170 QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYP 229
            G+  EA+ L  + +   C    +P V+ Y  ++ GLC+    ++ R +     GR    
Sbjct: 242 LGRVREAARLVDRMMTKGC----MPGVMTYGFLLQGLCRVRQADEARAML----GRVPEL 293

Query: 230 DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSL 289
           +  ++N++I   C       A+G  + A EL+E      G  G  C PD  +Y  +++ L
Sbjct: 294 NVVLFNTVI-GGCL------AEGKLAEATELYETM----GLKG--CQPDAHTYSILMHGL 340

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
           CK   +  A  L  +M+ +G  P+VV Y+ ++  +C  G  DD R L   + ++G   ++
Sbjct: 341 CKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNS 400

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRT 396
             YN +I +  K  +++EA+ L  EM S G  PD             N  + EA  +F  
Sbjct: 401 QGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFEN 460

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           L       +   +N ++  L +  R + A  L K++  +G   +VV+Y  +I  +C +G 
Sbjct: 461 LLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGN 520

Query: 457 IEKAYDLLPDMEEKI------------------RECLKAIELLHKMAKRYVKPDEITVSI 498
           ++++  LL +M EK                   R    A+EL  +M  + + PD +T + 
Sbjct: 521 VDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNT 580

Query: 499 LEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           L   L K    H  +NLL    + N     +T
Sbjct: 581 LINGLCKMGWMHAALNLLEKLHNENVHPDIIT 612



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 154/342 (45%), Gaps = 30/342 (8%)

Query: 90  FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149
           FN+++G    +        L E +   G  PD  + +ILM+  CK+  +  A   L  + 
Sbjct: 298 FNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREME 357

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD 209
           +K F+P+VVT   ++   C  G + +   L  +  A      +  N   Y  +I  LCKD
Sbjct: 358 KKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSA----KGLTLNSQGYNGMIYALCKD 413

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
           G +++   L  +M+ +G  PD   YN++I   C     E+A+        L EE V  NG
Sbjct: 414 GRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFE---NLLEEGVVANG 470

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
                     ++Y +II++L +D     A  L  +M   G   DVV Y+ LI   C  G 
Sbjct: 471 ----------ITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGN 520

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NS 385
           +D +  L   +  +G  P+  SYN LI+   K  +V +AL L  +M++ G+ PD    N+
Sbjct: 521 VDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNT 580

Query: 386 CI--------LEAA-ELFRTLHNTKFELDLTVFNCLVDGLCK 418
            I        + AA  L   LHN     D+  +N L+   CK
Sbjct: 581 LINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCK 622



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 2/127 (1%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G V+   +L     M      P   S+N L+  L  ++   + + LS+++   GL PD
Sbjct: 517 KDGNVD--RSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPD 574

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+ N L+N  CKM  +  A   L ++  +   PD++T   LI   C      +A+ L  
Sbjct: 575 IVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLN 634

Query: 182 KFVAFDC 188
           + +A  C
Sbjct: 635 RAMAAVC 641


>gi|357449161|ref|XP_003594857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483905|gb|AES65108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 194/385 (50%), Gaps = 43/385 (11%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++++L+  L  +      + L + +   G  P+ V+ N+L++  CK   +S A   +  +
Sbjct: 212 TYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNM 271

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
             K   P+ VT   L+ GLC++GK  +A  L  + VA  C    +PN I + +++DG  K
Sbjct: 272 FLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKC----VPNDITFGTLVDGFVK 327

Query: 209 DG-FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
            G  ++ VRVL + ++ +G   + F Y+SLI        +++ KG     ++L +E V  
Sbjct: 328 HGRALDGVRVL-VSLEEKGYRGNEFSYSSLISGL-----FKEGKG--EHGMQLWKEMV-- 377

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
             E G  C P+ + Y ++I+ LC++   D+AKE  ++MK++G  P+   YSSL+ GY   
Sbjct: 378 --EKG--CKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEA 433

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
           G I  A  ++  +    C      Y+ LIN   K  K++EAL ++ +M+S G++      
Sbjct: 434 GDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQMLSRGIK------ 487

Query: 388 LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP--EPNVVTYT 445
                           LD+  ++ ++ G C +  +    +LF ++  + P  +P+VVTY 
Sbjct: 488 ----------------LDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQPDVVTYN 531

Query: 446 VMICGLCIEGGIEKAYDLLPDMEEK 470
           +++   C +  + +A D+L  M ++
Sbjct: 532 ILLNAFCTKNSVSRAIDILNTMLDQ 556



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 149/317 (47%), Gaps = 41/317 (12%)

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN 213
            P+ ++   +I+ LC  G   +A  +F      +C    + +   Y++++ GLC +G ++
Sbjct: 172 QPNGLSFNLVIKALCRVGNVDQAVEVFRGMSDRNC----VADGYTYSTLMHGLCNEGRID 227

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE-FVNGNGELG 272
           +   L  +M+  G +P+   +N LI   C        KG+ S A +L +  F+ G     
Sbjct: 228 EAVSLLDEMQVEGTFPNPVAFNVLISALC-------KKGDLSRASKLVDNMFLKG----- 275

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
             C P+ ++Y S+++ LC    +DKA  L   M +   +P+ + + +L+DG+   GR  D
Sbjct: 276 --CVPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALD 333

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392
             ++ VS+E +G   +  SY++LI+   K  K E  + L+ EM+  G +P+         
Sbjct: 334 GVRVLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNT-------- 385

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
                          V++ L+DGLC+  +   A E   ++   G  PN  TY+ ++ G  
Sbjct: 386 --------------IVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYF 431

Query: 453 IEGGIEKAYDLLPDMEE 469
             G I KA  +  +M +
Sbjct: 432 EAGDIHKAILVWKEMTD 448



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 144/297 (48%), Gaps = 19/297 (6%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++NSL+  L  K      + L  R+     +P+ ++   L++ F K     D    L  +
Sbjct: 282 TYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSL 341

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
             K +  +  +   LI GL  +GK      L+ + V   C+PN I     Y+++IDGLC+
Sbjct: 342 EEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTI----VYSALIDGLCR 397

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           +G  ++ +   ++MK +G  P++F Y+SL+  Y  A       G+   A+ + +E  + +
Sbjct: 398 EGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEA-------GDIHKAILVWKEMTDND 450

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                 C+   + Y  +IN LCK+  + +A  ++  M SRGI  DVV YSS+I G+C   
Sbjct: 451 ------CNHHEVCYSILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQ 504

Query: 329 RIDDARKLFVSI--ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            ++   KLF  +   +    PD  +YN L+N++     V  A+ +   M+  G  PD
Sbjct: 505 LVEQGMKLFNQMLCHNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPD 561



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 170/371 (45%), Gaps = 42/371 (11%)

Query: 157 VVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVR 216
           V +   ++  +  +G F  A   +   +  +   N+ PN + +  +I  LC+ G V++  
Sbjct: 136 VKSFNTVLNVVIQEGCFDLALEFYNHVIDSNSFSNIQPNGLSFNLVIKALCRVGNVDQAV 195

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF-VNGNGELGVIC 275
            +F  M  R    D + Y++L+   C        +G    A+ L +E  V G        
Sbjct: 196 EVFRGMSDRNCVADGYTYSTLMHGLC-------NEGRIDEAVSLLDEMQVEGT------- 241

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
            P+ +++  +I++LCK   + +A +L  +M  +G +P+ V Y+SL+ G CL G++D A  
Sbjct: 242 FPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMS 301

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395
           L   + +  C+P+  ++ TL++ + K  +                       L+   +  
Sbjct: 302 LLNRMVANKCVPNDITFGTLVDGFVKHGRA----------------------LDGVRVLV 339

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
           +L    +  +   ++ L+ GL K  +     +L+K++   G +PN + Y+ +I GLC EG
Sbjct: 340 SLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREG 399

Query: 456 GIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL--EELLNKDENCHE-C 512
             ++A + L +M+ K             +   Y +  +I  +IL  +E+ + D N HE C
Sbjct: 400 KPDEAKEYLIEMKNKGHT--PNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVC 457

Query: 513 MNLLPSFLSRN 523
            ++L + L +N
Sbjct: 458 YSILINGLCKN 468



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 92/197 (46%), Gaps = 26/197 (13%)

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELF---LDMKS-RGIIPDVVVYSSLIDGYCLMGRI 330
           C   V S+ +++N + ++   D A E +   +D  S   I P+ + ++ +I   C +G +
Sbjct: 132 CKQTVKSFNTVLNVVIQEGCFDLALEFYNHVIDSNSFSNIQPNGLSFNLVIKALCRVGNV 191

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEA 390
           D A ++F  +    C+ D  +Y+TL++      +++EA+SL  EM   G  P+       
Sbjct: 192 DQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNP------ 245

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
                             FN L+  LCK   L  A +L   +   G  PN VTY  ++ G
Sbjct: 246 ----------------VAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHG 289

Query: 451 LCIEGGIEKAYDLLPDM 467
           LC++G ++KA  LL  M
Sbjct: 290 LCLKGKLDKAMSLLNRM 306


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 126/465 (27%), Positives = 204/465 (43%), Gaps = 57/465 (12%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N    E  +++AL     MI     P + ++   + AL   ++    I L  R+   G  
Sbjct: 276 NGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCR 335

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+  +   L++   ++  +  A     ++L++   P+ VT   LI  LC+ G+F+ A  +
Sbjct: 336 PNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKI 395

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F            + N   Y  II GLC  G + K  VLF  M   G  P    YN+LI 
Sbjct: 396 FHWMEGHGS----LANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLIN 451

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            Y         KGN + A  L  + +  NG     C PD  +Y  +++   K   ++ A 
Sbjct: 452 GYL-------TKGNVNNAARL-LDLMKENG-----CEPDEWTYNELVSGFSKWGKLESAS 498

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
             F +M   G+ P+ V Y++LIDG+   G++D A  L   +E  GC P+  SYN +IN  
Sbjct: 499 FYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGL 558

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
           SK  +  EA  +  +M+  G+ P+                      +  +  L+DGLC++
Sbjct: 559 SKENRFSEAEKICDKMVEQGLLPN----------------------VITYTTLIDGLCRN 596

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK--------- 470
            R + A+++F  + +    PN+ TY+ +I GLC EG  ++A  LL +ME K         
Sbjct: 597 GRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTF 656

Query: 471 ---------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
                    +     A  LL +M     KP+  T S+L + L K+
Sbjct: 657 TSLIDGFVVLGRIDHAFLLLRRMVDMGCKPNYRTYSVLLKGLQKE 701



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 136/525 (25%), Positives = 229/525 (43%), Gaps = 96/525 (18%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E E+     F N +  M     + S N+LL  LA  +       L +++   G+ P  ++
Sbjct: 141 EEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLT 200

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N L+N   K   V +A + L +I +   SPDV T   LI G C       A G+F + V
Sbjct: 201 FNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMV 260

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
              C     PN + Y+++I+GLC +G V++   +  +M  +GI P  + Y   I   C  
Sbjct: 261 KEGCD----PNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAI 316

Query: 245 VNWEDA--------KGNTSAALELHEEFVNGNGELGVI--------------CHPDVLSY 282
            + E+A        K      ++ +   ++G   LG +                P+ ++Y
Sbjct: 317 EHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTY 376

Query: 283 CSIINSLC---------------------------KDVL--------VDKAKELFLDMKS 307
            ++IN LC                            +++        ++KA  LF  M  
Sbjct: 377 NALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLK 436

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            G +P VV Y++LI+GY   G +++A +L   ++  GC PD  +YN L++ +SK  K+E 
Sbjct: 437 MGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLES 496

Query: 368 ALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           A   + EM+  G+ P+             +  +  A  L + +       ++  +N +++
Sbjct: 497 ASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVIN 556

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC 474
           GL K  R   A ++  K+   G  PNV+TYT +I GLC  G  + A+ +  DME+  R+C
Sbjct: 557 GLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEK--RKC 614

Query: 475 L-----------------KAIE---LLHKMAKRYVKPDEITVSIL 499
           L                 KA E   LL +M ++ + PDE+T + L
Sbjct: 615 LPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSL 659


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 127/534 (23%), Positives = 213/534 (39%), Gaps = 100/534 (18%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNF---ICLSERLNTIGLLPDFV 123
            + DAL   + M      P  P ++ +L A   +     F   + + + L+  G   D  
Sbjct: 130 RIADALSVLDEMRRRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDLHGRGCALDVG 189

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFS--PDVVTLGCLIRGLCMQGKFTEASGLFT 181
           + N+++N  C   G  D  + L R L   F   PDVV+   +++GLCM  ++     L  
Sbjct: 190 NCNLVLNAVCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLME 249

Query: 182 KFVAFDCRPNVI-------------------------------PNVICYASIIDGLCKDG 210
           + V   C PNV+                               P++  YA+++DG+CK+G
Sbjct: 250 EMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEG 309

Query: 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK------------------- 251
            +     +   M   G+ P+   YN++++  C A  WE A+                   
Sbjct: 310 HLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFN 369

Query: 252 ---------GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
                    G     +EL E+ +         C PDV++Y ++IN  CK+ L+D+A  L 
Sbjct: 370 ILVDFFCQNGLVYRVIELLEQMLEHG------CVPDVITYTTVINGFCKEGLIDEAVMLL 423

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
             M + G  P+ + Y+ ++ G C   R  DA  L   +  +GC P+  ++NT+IN   K 
Sbjct: 424 KSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKK 483

Query: 363 EKVEEALSLYGEMISMGVRPD---NSCIL----------EAAELFRTLHNTKFELDLTVF 409
             VE+A+ L  +M+  G  PD    S ++          EA EL   + N     +  ++
Sbjct: 484 GLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIY 543

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           + +   L K  R+    ++F  +       + V Y  +I  LC  GG +           
Sbjct: 544 SSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTD----------- 592

Query: 470 KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
                 +AIE L  M      P+E T +IL   L  +    E   +L    S+ 
Sbjct: 593 ------RAIEFLAYMVSSGCMPNESTYTILIRGLASEGFVKEAQEMLTELCSKG 640



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 105/401 (26%), Positives = 174/401 (43%), Gaps = 51/401 (12%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK----DG 210
           P+  T   ++R LC +G+  +A  +  +     C P  IP +  Y  I++  C      G
Sbjct: 113 PNAYTYFPVVRALCARGRIADALSVLDEMRRRGCAP--IPPM--YHVILEAACSRGGGGG 168

Query: 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGE 270
           F + VRVL  D+ GRG   D    N ++   C      D  G+   AL L  +     G 
Sbjct: 169 FRSAVRVL-QDLHGRGCALDVGNCNLVLNAVC------DQGGSVDEALRLLRDLPTSFG- 220

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
               C PDV+SY +++  LC      + ++L  +M   G  P+VV +++LI   C  G  
Sbjct: 221 ----CDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLF 276

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC---I 387
           +   ++   +   GC PD   Y T+++   K   +E A  +   M S G++P+  C   +
Sbjct: 277 ERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTV 336

Query: 388 L----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
           L          +A EL   + +    LD   FN LVD  C++  +    EL +++  +G 
Sbjct: 337 LKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGC 396

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIE 479
            P+V+TYT +I G C EG I++A  LL  M                         + A +
Sbjct: 397 VPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAED 456

Query: 480 LLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
           L+ +M ++   P+ +T + +   L K     + + LL   L
Sbjct: 457 LMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQML 497



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 125/289 (43%), Gaps = 44/289 (15%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           +FN L+            I L E++   G +PD ++   ++N FCK   + +A + L  +
Sbjct: 367 TFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSM 426

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI--------------- 193
                 P+ ++   +++GLC   ++ +A  L ++ +   C PN +               
Sbjct: 427 AACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLV 486

Query: 194 ----------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
                           P++I Y+++IDGL K G  ++   L   M  +G+ P+  +Y+S+
Sbjct: 487 EQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSI 546

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
                        +G  +  +++ +   +      V    D + Y ++I+SLCK    D+
Sbjct: 547 ASAL-------SKEGRINRVIQMFDNIQD------VTIRSDAVLYNAVISSLCKRGGTDR 593

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           A E    M S G +P+   Y+ LI G    G + +A+++   + S+G +
Sbjct: 594 AIEFLAYMVSSGCMPNESTYTILIRGLASEGFVKEAQEMLTELCSKGAL 642



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 112/244 (45%), Gaps = 17/244 (6%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +++A+     M      P   S+  +L  L   + +V+   L  ++   G  P+ V+ N 
Sbjct: 416 IDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNT 475

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++N  CK   V  A   L ++L    SPD+++   +I GL   GK  EA  L    V   
Sbjct: 476 VINFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMV--- 532

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               + PN I Y+SI   L K+G +N+V  +F +++   I  DA +YN++I   C     
Sbjct: 533 -NKGMSPNTIIYSSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSLC----- 586

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
              +G T  A+E     V+        C P+  +Y  +I  L  +  V +A+E+  ++ S
Sbjct: 587 --KRGGTDRAIEFLAYMVSSG------CMPNESTYTILIRGLASEGFVKEAQEMLTELCS 638

Query: 308 RGII 311
           +G +
Sbjct: 639 KGAL 642



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 24/174 (13%)

Query: 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
           Y++++ GYC  G++  AR+L  S+      P+  +Y  ++ +     ++ +ALS+  EM 
Sbjct: 86  YNAMVSGYCRAGQLASARRLAASVPVP---PNAYTYFPVVRALCARGRIADALSVLDEMR 142

Query: 377 SMG---VRPDNSCILEAA-------------ELFRTLHNTKFELDLTVFNCLVDGLC-KS 419
             G   + P    ILEAA              + + LH     LD+   N +++ +C + 
Sbjct: 143 RRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDLHGRGCALDVGNCNLVLNAVCDQG 202

Query: 420 WRLRSAWELFKKLP-RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIR 472
             +  A  L + LP  +G +P+VV+Y  ++ GLC+     +  DL   MEE +R
Sbjct: 203 GSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDL---MEEMVR 253


>gi|357160857|ref|XP_003578899.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Brachypodium distachyon]
          Length = 714

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 136/495 (27%), Positives = 213/495 (43%), Gaps = 57/495 (11%)

Query: 72  LCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131
           L  F  M      PF+   N +L  L     + +   +   +  +G+ P   + N L++ 
Sbjct: 179 LSAFQEMARHGVAPFVKECNCVLRVLRDAARWDDMRAVYSDMLQLGVEPSIFTYNTLLDS 238

Query: 132 FCKMIGVSDAFVALGRILRKVFS---PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           FCK  G  D  VAL + +    +   P+ VT   +I GL  +G+  +A+ L         
Sbjct: 239 FCK-AGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKAAQLVDIM----- 292

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
           R +   +   Y  +I GL    FV K   L L+M+  GI P    YN+LI       +  
Sbjct: 293 RLSKKASAFTYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLI-------DGL 345

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
              GN  AA    +E +   G L     PD+++Y S+IN  CK   + +A  LF D+K  
Sbjct: 346 FKTGNAEAAQVKFDE-MRAKGLL-----PDLITYNSLINGYCKAGNLKQALCLFGDLKRA 399

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G+ P V+ Y+ LIDGYC +G ++ AR+L   +  E C+PD  +Y  L+N    +  +   
Sbjct: 400 GLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLAMV 459

Query: 369 LSLYGEMISMGVRPD----NSCILEAAELFRTLHNTKFEL-----------DLTVFNCLV 413
              + EM+S G+ PD    N+ I  +AEL        F+L           D   +N L+
Sbjct: 460 RIFFDEMLSKGLEPDCFAYNTRI--SAELTIGAITNAFQLREEMMLRGISSDTVTYNVLI 517

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE---- 469
           DGLCK+  L+ A+ L+ K+   G   + VTYT +I   C  G + +A ++   M      
Sbjct: 518 DGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGMVASGLS 577

Query: 470 --------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
                         +      A     KM +  V+P+E+T ++L   L +          
Sbjct: 578 PSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMHALCRMGRTESAYQH 637

Query: 516 LPSFLSRNQEESKLT 530
               L R    +K T
Sbjct: 638 FHEMLERGLVPNKYT 652



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/420 (24%), Positives = 171/420 (40%), Gaps = 74/420 (17%)

Query: 85  PFMPSFNSLLGAL----AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSD 140
           P + ++N+L+  L      +   V F    + +   GLLPD ++ N L+N +CK   +  
Sbjct: 333 PTVVTYNTLIDGLFKTGNAEAAQVKF----DEMRAKGLLPDLITYNSLINGYCKAGNLKQ 388

Query: 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200
           A    G + R    P V+T   LI G C  G    A  L  +    DC    +P+V  Y 
Sbjct: 389 ALCLFGDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDC----LPDVCTYT 444

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL 260
            +++G C    +  VR+ F +M  +G+ PD F YN+ I         E   G  + A +L
Sbjct: 445 ILMNGSCMVRNLAMVRIFFDEMLSKGLEPDCFAYNTRISA-------ELTIGAITNAFQL 497

Query: 261 HEEF---------VNGNGELGVICHP--------------------DVLSYCSIINSLCK 291
            EE          V  N  +  +C                      D ++Y  +I++ C+
Sbjct: 498 REEMMLRGISSDTVTYNVLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCE 557

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
              + +AK +F  M + G+ P VV Y+  I  YC  G +  A   F  +  EG  P+  +
Sbjct: 558 RGRLIEAKNIFDGMVASGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVT 617

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNC 411
           YN L+++  ++ + E A   + EM+  G+ P+                         +  
Sbjct: 618 YNVLMHALCRMGRTESAYQHFHEMLERGLVPNKY----------------------TYTL 655

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI 471
           L+DG CK      A  L+ ++ + G  P+  T+  +  G     G    YD +  +E  +
Sbjct: 656 LIDGSCKEGNWVHAIRLYCEMHQKGIHPDHCTHNALFKGF----GEGHMYDAVQYLENVV 711



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 111/251 (44%), Gaps = 17/251 (6%)

Query: 74  FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
           FF+ M+     P   ++N+ + A        N   L E +   G+  D V+ N+L++  C
Sbjct: 462 FFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGLC 521

Query: 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
           K   + DA+V   +++      D VT  CLI   C +G+  EA  +F   VA      + 
Sbjct: 522 KTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGMVA----SGLS 577

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P+V+ Y   I   C+ G +      F  M   G+ P+   YN L+   C         G 
Sbjct: 578 PSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMHALC-------RMGR 630

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
           T +A +   E +    E G++  P+  +Y  +I+  CK+     A  L+ +M  +GI PD
Sbjct: 631 TESAYQHFHEML----ERGLV--PNKYTYTLLIDGSCKEGNWVHAIRLYCEMHQKGIHPD 684

Query: 314 VVVYSSLIDGY 324
              +++L  G+
Sbjct: 685 HCTHNALFKGF 695


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 136/525 (25%), Positives = 228/525 (43%), Gaps = 96/525 (18%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E E+     F N +  M     + S N+LL  LA  +       L +++   G+ P  ++
Sbjct: 183 EEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLT 242

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N L+N   K   V +A + L +I +   SPDV T   LI G C       A G+F + V
Sbjct: 243 FNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMV 302

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
              C     PN + Y+++I+GLC +G V++   +  +M  +GI P  + Y   I   C  
Sbjct: 303 KEGCD----PNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAI 358

Query: 245 VNWEDA--------KGNTSAALELHEEFVNGNGELGVI--------------CHPDVLSY 282
            + E+A        K      ++ +   ++G   LG +                P+ ++Y
Sbjct: 359 EHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTY 418

Query: 283 CSIINSLC---------------------------KDVL--------VDKAKELFLDMKS 307
            ++IN LC                            +++        ++KA  LF  M  
Sbjct: 419 NALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLK 478

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            G +P VV Y++LI+GY   G +++A +L   ++  GC PD  +YN L++ +SK  K+E 
Sbjct: 479 MGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLES 538

Query: 368 ALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           A   + EM+  G+ P+             +  +  A  L   +       ++  +N +++
Sbjct: 539 ASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVIN 598

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC 474
           GL K  R   A ++  K+   G  PNV+TYT +I GLC  G  + A+ +  DME+  R+C
Sbjct: 599 GLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEK--RKC 656

Query: 475 L-----------------KAIE---LLHKMAKRYVKPDEITVSIL 499
           L                 KA E   LL +M ++ + PDE+T + L
Sbjct: 657 LPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSL 701



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 126/465 (27%), Positives = 203/465 (43%), Gaps = 57/465 (12%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N    E  +++AL     MI     P + ++   + AL   ++    I L  R+   G  
Sbjct: 318 NGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCR 377

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+  +   L++   ++  +  A     ++L++   P+ VT   LI  LC+ G+F+ A  +
Sbjct: 378 PNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKI 437

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F            + N   Y  II GLC  G + K  VLF  M   G  P    YN+LI 
Sbjct: 438 FHWMEGHGS----LANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLIN 493

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            Y         KGN + A  L +  +  NG     C PD  +Y  +++   K   ++ A 
Sbjct: 494 GYL-------TKGNVNNAARLLD-LMKENG-----CEPDEWTYNELVSGFSKWGKLESAS 540

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
             F +M   G+ P+ V Y++LIDG+   G++D A  L   +E  GC P+  SYN +IN  
Sbjct: 541 FYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGL 600

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
           SK  +  EA  +  +M   G+ P+                      +  +  L+DGLC++
Sbjct: 601 SKENRFSEAEKICDKMAEQGLLPN----------------------VITYTTLIDGLCRN 638

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK--------- 470
            R + A+++F  + +    PN+ TY+ +I GLC EG  ++A  LL +ME K         
Sbjct: 639 GRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTF 698

Query: 471 ---------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
                    +     A  LL +M     KP+  T S+L + L K+
Sbjct: 699 TSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKE 743



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 126/498 (25%), Positives = 209/498 (41%), Gaps = 73/498 (14%)

Query: 63  SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF 122
            G++E   A+  F  M+ M P P + ++N+L+     K    N   L + +   G  PD 
Sbjct: 463 GGDIE--KAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDE 520

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
            + N L++ F K   +  A      ++    +P+ V+   LI G    GK   A  L  +
Sbjct: 521 WTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLER 580

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
                C PNV      Y ++I+GL K+   ++   +   M  +G+ P+   Y +LI   C
Sbjct: 581 MEEMGCNPNVES----YNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLC 636

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
                    G T  A ++  +           C P++ +Y S+I  LC++   D+A+ L 
Sbjct: 637 -------RNGRTQFAFKIFHDMEKRK------CLPNLYTYSSLIYGLCQEGKADEAEILL 683

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN----- 357
            +M+ +G+ PD V ++SLIDG+ ++GRID A  L   +   GC P+  +Y+ L+      
Sbjct: 684 KEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKE 743

Query: 358 ----------------SYSKIEK---VEEALSLYGEMISMGVRP--DNSCIL-------- 388
                           S+S  EK    E   +L   M  +G  P  D    L        
Sbjct: 744 CLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKG 803

Query: 389 ---EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
              EA +L + +    F  D  ++  L+   CK+  +  A ++F  +   G + ++  Y 
Sbjct: 804 RFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYR 863

Query: 446 VMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505
            +IC LC  G +E+A  L  +M EK                     DEI  ++L + L K
Sbjct: 864 ALICALCKAGQVEEAQALFDNMLEK-----------------EWNADEIVWTVLVDGLLK 906

Query: 506 DENCHECMNLLPSFLSRN 523
           +     CM LL    S+N
Sbjct: 907 EGELDLCMKLLHIMESKN 924



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/401 (26%), Positives = 179/401 (44%), Gaps = 43/401 (10%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           +SK G+V++  AL     M  M   P + S+N+++  L+ +  +     + +++   GLL
Sbjct: 565 HSKDGKVDI--ALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLL 622

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ ++   L++  C+      AF     + ++   P++ T   LI GLC +GK  EA  L
Sbjct: 623 PNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEIL 682

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             +      R  + P+ + + S+IDG    G ++   +L   M   G  P+   Y+ L++
Sbjct: 683 LKEME----RKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLK 738

Query: 240 VYC--CAVNWEDAKGNTSAALEL--HEEFVNGN---------GELGVICHPDVLSYCSII 286
                C +  E       A      HE+ VN            E+G  C P + +Y +++
Sbjct: 739 GLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIG--CEPTLDTYSTLV 796

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           + LC+     +A++L  DMK RG  PD  +Y SL+  +C    +D A K+F SIE++G  
Sbjct: 797 SGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQ 856

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406
              S Y  LI +  K  +VEEA +L+  M+                        ++  D 
Sbjct: 857 LHLSIYRALICALCKAGQVEEAQALFDNMLE----------------------KEWNADE 894

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
            V+  LVDGL K   L    +L   +      PN+ TY ++
Sbjct: 895 IVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVIL 935



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 138/322 (42%), Gaps = 41/322 (12%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           A   F+ M   +  P + +++SL+  L  +        L + +   GL PD V+   L++
Sbjct: 644 AFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLID 703

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGL-----------CMQGKFTEASGL 179
            F  +  +  AF+ L R++     P+  T   L++GL            +Q +   +   
Sbjct: 704 GFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSP 763

Query: 180 FTKFVAFDCRPNVI---------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
             K V F+   N++         P +  Y++++ GLC+ G   +   L  DMK RG  PD
Sbjct: 764 HEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPD 823

Query: 231 AFVYNSLIRVYCCAVNWEDA----KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII 286
             +Y SL+  +C  +  + A        +   +LH                    Y ++I
Sbjct: 824 REIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSI-----------------YRALI 866

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
            +LCK   V++A+ LF +M  +    D +V++ L+DG    G +D   KL   +ES+   
Sbjct: 867 CALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFT 926

Query: 347 PDTSSYNTLINSYSKIEKVEEA 368
           P+  +Y  L    S+I K  E+
Sbjct: 927 PNIQTYVILGRELSRIGKSIES 948


>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
 gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
          Length = 722

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 124/462 (26%), Positives = 202/462 (43%), Gaps = 53/462 (11%)

Query: 72  LCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131
           L  F+ M      P +   N +L  L+    + +   +   +  +G+ P  V+ N L++ 
Sbjct: 187 LSAFHEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDS 246

Query: 132 FCKMIGVSDAFVALGRILRKVFS---PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           F K  G +D    L + +    S   P+ VT   +I GL  +G   EA+ +         
Sbjct: 247 FLKE-GRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGM----- 300

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
           R +   +   Y  +I GL   GFV K   L L+M+  GI P    YN++I     +   E
Sbjct: 301 RLSKKASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVE 360

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
            A+           +FV     +G+   PDV++Y S++N  CK   + +A  LF D++  
Sbjct: 361 AAQ----------VKFVEMRA-MGL--QPDVITYNSLLNGYCKAGSLKEALLLFGDLRHA 407

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G+ P V+ Y+ LIDGYC +G +++AR+L   +  +GC+PD  +Y  L+        +  A
Sbjct: 408 GLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMA 467

Query: 369 LSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDG 415
              + EM+S G++PD                I +A  L   +       D   +N L+DG
Sbjct: 468 REFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDG 527

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------ 469
           LCK+  L  A +L  K+   G +P+ +TYT +I   C  G + +A     DM        
Sbjct: 528 LCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPS 587

Query: 470 ------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                       +      A     KM +  V+P+EIT ++L
Sbjct: 588 AVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVL 629



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 100/357 (28%), Positives = 161/357 (45%), Gaps = 39/357 (10%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +  +GL PD ++ N L+N +CK   + +A +  G +     +P V+T   LI G C  G 
Sbjct: 369 MRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGD 428

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
             EA  L  + V   C    +P+V  Y  ++ G      +   R  F +M  +G+ PD F
Sbjct: 429 LEEARRLKEEMVEQGC----LPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCF 484

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            YN+ IR        E   G  + A  L E  +     L  I   D ++Y  +I+ LCK 
Sbjct: 485 AYNTRIRA-------ELTLGAIAKAFRLREVMM-----LEGIS-SDTVTYNILIDGLCKT 531

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             ++ AK+L + M   G+ PD + Y+ LI  +C  G + +ARK F  + S+G  P   +Y
Sbjct: 532 GNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTY 591

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCL 412
              I++Y +   +  A   + +M+  GV P+                         +N L
Sbjct: 592 TVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNE----------------------ITYNVL 629

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           +  LC++ R + A+  F ++   G  PN  TYT++I G C EG  E A     +M +
Sbjct: 630 IHALCRTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQ 686



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/370 (28%), Positives = 167/370 (45%), Gaps = 52/370 (14%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
           P VVT   +I GL   G+   A   F +  A   +P+VI     Y S+++G CK G + +
Sbjct: 341 PTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVI----TYNSLLNGYCKAGSLKE 396

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
             +LF D++  G+ P    YN LI  YC   + E+A+        L EE V    E G  
Sbjct: 397 ALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEAR-------RLKEEMV----EQG-- 443

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
           C PDV +Y  ++        +  A+E F +M S+G+ PD   Y++ I     +G I  A 
Sbjct: 444 CLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAF 503

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCIL--- 388
           +L   +  EG   DT +YN LI+   K   + +A  L  +M+  G++PD    +C++   
Sbjct: 504 RLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAH 563

Query: 389 -------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
                  EA + F+ + +         +   +   C+   L SA+  F+K+   G EPN 
Sbjct: 564 CERGLLREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNE 623

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEE 501
           +TY V+I  LC  G  + AY                    H+M +R + P++ T ++L  
Sbjct: 624 ITYNVLIHALCRTGRTQLAY-----------------RHFHEMLERGLVPNKYTYTLL-- 664

Query: 502 LLNKDENCHE 511
               D NC E
Sbjct: 665 ---IDGNCKE 671


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 113/455 (24%), Positives = 195/455 (42%), Gaps = 92/455 (20%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +  A  F   M++    P   ++N+L+   +    +   + + + +    +LPD V+LN+
Sbjct: 274 MGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNM 333

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           LM   CK   + +A      +  K  +PDV +   ++ G   +G   + + LF   +   
Sbjct: 334 LMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDG 393

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
             P++                                P+V+ Y ++I  LC+ G ++   
Sbjct: 394 IAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAM 453

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
             F  M  +G+ PD + Y+ LI+ +C         G+   A EL  E +N    L     
Sbjct: 454 EKFNQMIDQGVAPDKYAYHCLIQGFC-------THGSLLKAKELILEIMNNGMRL----- 501

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
            D++ + SIIN+LCK   +  A+ +F    + G  PD VVYS L+DGYCL+G+++ A ++
Sbjct: 502 -DIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRV 560

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------- 383
           F ++ S G  P+   Y TL+N Y KI +++E LSL+ EM+  G++P              
Sbjct: 561 FDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFV 620

Query: 384 -----------------------------------NSCILEAAELFRTLHNTKFELDLTV 408
                                              N C  EA  LF+ L     ++D+  
Sbjct: 621 AGRTVPAKVKFHEMTESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVKIDIIT 680

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
            N ++ G+ ++ R+  A +LF  + R G  P VVT
Sbjct: 681 LNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVT 715



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 177/370 (47%), Gaps = 36/370 (9%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ PD V+ + +++  CK   +  A   L +++ K   PD  T   LI G    G++ EA
Sbjct: 253 GIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEA 312

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             +F +      R +++P+V+    ++  LCK G + + R +F  M  +G  PD F Y  
Sbjct: 313 VRVFKEMR----RHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKI 368

Query: 237 LIRVYC---CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDV 293
           ++  Y    C V+  D             + + G+G       PD+ ++  +I +     
Sbjct: 369 MLNGYATKGCLVDMTDL-----------FDLMLGDG-----IAPDIYTFSVLIKAYANCG 412

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353
           ++DKA  +F +M+  G+ PDVV Y+++I   C +G++DDA + F  +  +G  PD  +Y+
Sbjct: 413 MLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYH 472

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPD---------NSC----ILEAAELFRTLHNT 400
            LI  +     + +A  L  E+++ G+R D         N C    I++A  +F    N 
Sbjct: 473 CLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNV 532

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
               D  V++ L+DG C   ++  A  +F  +   G EPNVV Y  ++ G C  G I++ 
Sbjct: 533 GQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEG 592

Query: 461 YDLLPDMEEK 470
             L  +M +K
Sbjct: 593 LSLFREMLQK 602



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 125/505 (24%), Positives = 198/505 (39%), Gaps = 124/505 (24%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           L P   +  ILM+C  +      A    G++LR     D++    L++G C   +  EA 
Sbjct: 111 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEAL 170

Query: 178 G-LFTKFVAFDCRPNVI---------------------------------PNVICYASII 203
             L  +     C P+V                                  P+V+ Y ++I
Sbjct: 171 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVI 230

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV------------------ 245
           D   K+G VNK   LF +M  RGI PD   Y+S++   C A                   
Sbjct: 231 DCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVL 290

Query: 246 --NWE--------DAKGNTSAALELHEEF---------VNGNGELGVIC----------- 275
             NW          + G    A+ + +E          V  N  +G +C           
Sbjct: 291 PDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDV 350

Query: 276 ---------HPDVLSYCSIINSLC-KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
                    +PDV SY  ++N    K  LVD   +LF  M   GI PD+  +S LI  Y 
Sbjct: 351 FDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMT-DLFDLMLGDGIAPDIYTFSVLIKAYA 409

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-- 383
             G +D A  +F  +   G  PD  +Y T+I +  +I K+++A+  + +MI  GV PD  
Sbjct: 410 NCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKY 469

Query: 384 -----------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
                      +  +L+A EL   + N    LD+  F+ +++ LCK  R+  A  +F   
Sbjct: 470 AYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLT 529

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKA------------------YDLLPDMEEKIREC 474
              G  P+ V Y++++ G C+ G +EKA                  Y  L +   KI   
Sbjct: 530 VNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRI 589

Query: 475 LKAIELLHKMAKRYVKPDEITVSIL 499
            + + L  +M ++ +KP  I  +I+
Sbjct: 590 DEGLSLFREMLQKGIKPSTILYNII 614


>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 347

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 158/325 (48%), Gaps = 32/325 (9%)

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN 213
            PD+ T   LI GLC +G    A  L  +     C PNVI     Y  +ID  CK+G + 
Sbjct: 11  GPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVIT----YTILIDRFCKEGRLE 66

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
           + R +  +M G+G+  +A  YN LI   C     +DA              +N  G++  
Sbjct: 67  EARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDA--------------LNMFGDMSS 112

Query: 274 I-CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
             C PD+ ++ S+I  LCK    ++A  L+ DM   G+I + + Y++LI  +   G + +
Sbjct: 113 KGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQE 172

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN-SC----- 386
           A KL   +   GC  D  +YN LI +  +   +E+ L+L+ +M+S G+ P+N SC     
Sbjct: 173 ALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILIN 232

Query: 387 -------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
                  I  A E  R + +     D+  +N L++GLCK+ R + A  LF KL   G  P
Sbjct: 233 GLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICP 292

Query: 440 NVVTYTVMICGLCIEGGIEKAYDLL 464
           + +TY  +I   C EG  + A+ LL
Sbjct: 293 DAITYNTLISWHCKEGMFDDAHLLL 317



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/267 (33%), Positives = 126/267 (47%), Gaps = 17/267 (6%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL  + V  N L++  CK   V DA    G +  K   PD+ T   LI GLC   KF EA
Sbjct: 79  GLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEA 138

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
            GL+   +       VI N I Y ++I    + G + +   L  DM  RG   D   YN 
Sbjct: 139 LGLYQDMLL----EGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNG 194

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI+  C A       GN    L L E+ ++         +P+ +S   +IN LC+   + 
Sbjct: 195 LIKALCRA-------GNIEKGLALFEDMMSKG------LNPNNISCNILINGLCRTGNIQ 241

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A E   DM  RG+ PD+V Y+SLI+G C  GR  +A  LF  ++ EG  PD  +YNTLI
Sbjct: 242 HALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLI 301

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD 383
           + + K    ++A  L    +  G  P+
Sbjct: 302 SWHCKEGMFDDAHLLLSRGVDSGFIPN 328



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 167/381 (43%), Gaps = 39/381 (10%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           M+ +   P + ++N+L+  L  K Y V+   L   +   G  P+ ++  IL++ FCK   
Sbjct: 5   MLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGR 64

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           + +A   L  +  K  + + V   CLI  LC   K  +A  +F    +  C+P++     
Sbjct: 65  LEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFT--- 121

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            + S+I GLCK     +   L+ DM   G+  +   YN+LI  +         +G    A
Sbjct: 122 -FNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFL-------RRGAMQEA 173

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
           L+L       N  L   C  D ++Y  +I +LC+   ++K   LF DM S+G+ P+ +  
Sbjct: 174 LKLV------NDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISC 227

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           + LI+G C  G I  A +    +   G  PD  +YN+LIN   K  + +EAL+L+ ++  
Sbjct: 228 NILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQV 287

Query: 378 MGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
            G+ P                      D   +N L+   CK      A  L  +    G 
Sbjct: 288 EGICP----------------------DAITYNTLISWHCKEGMFDDAHLLLSRGVDSGF 325

Query: 438 EPNVVTYTVMICGLCIEGGIE 458
            PN VT+ +++     EG  E
Sbjct: 326 IPNEVTWYILVSNFIKEGDQE 346



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 149/323 (46%), Gaps = 52/323 (16%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P++  Y ++I GLCK G++   R L  +M+ +G  P+   Y  LI  +C        +G 
Sbjct: 12  PDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFC-------KEGR 64

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
              A  + +E ++G G        + + Y  +I++LCKD  V  A  +F DM S+G  PD
Sbjct: 65  LEEARNVLDE-MSGKG-----LALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPD 118

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           +  ++SLI G C + + ++A  L+  +  EG I +T +YNTLI+++ +   ++EAL L  
Sbjct: 119 IFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVN 178

Query: 374 EMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
           +M+  G                        LD   +N L+  LC++  +     LF+ + 
Sbjct: 179 DMLFRGC----------------------PLDDITYNGLIKALCRAGNIEKGLALFEDMM 216

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDE 493
             G  PN ++  ++I GLC  G I+ A                 +E L  M  R + PD 
Sbjct: 217 SKGLNPNNISCNILINGLCRTGNIQHA-----------------LEFLRDMIHRGLTPDI 259

Query: 494 ITVSILEELLNKDENCHECMNLL 516
           +T + L   L K     E +NL 
Sbjct: 260 VTYNSLINGLCKTGRAQEALNLF 282



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 116/258 (44%), Gaps = 17/258 (6%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++ DAL  F  M      P + +FNSL+  L     +   + L + +   G++ + ++ N
Sbjct: 99  KVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYN 158

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ F +   + +A   +  +L +    D +T   LI+ LC  G   +   LF   ++ 
Sbjct: 159 TLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSK 218

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
              PN   N+ C   +I+GLC+ G +        DM  RG+ PD   YNSLI   C    
Sbjct: 219 GLNPN---NISCNI-LINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLC---- 270

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G    AL L ++      ++  IC PD ++Y ++I+  CK+ + D A  L     
Sbjct: 271 ---KTGRAQEALNLFDKL-----QVEGIC-PDAITYNTLISWHCKEGMFDDAHLLLSRGV 321

Query: 307 SRGIIPDVVVYSSLIDGY 324
             G IP+ V +  L+  +
Sbjct: 322 DSGFIPNEVTWYILVSNF 339



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 24/185 (12%)

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M S G  PD+  Y++LI G C  G +  AR+L   ++ +GC P+  +Y  LI+ + K  +
Sbjct: 5   MLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGR 64

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
           +EEA ++  EM   G+                       L+   +NCL+  LCK  +++ 
Sbjct: 65  LEEARNVLDEMSGKGL----------------------ALNAVGYNCLISALCKDEKVQD 102

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM--EEKIRECLKAIELLH 482
           A  +F  +   G +P++ T+  +I GLC     E+A  L  DM  E  I   +    L+H
Sbjct: 103 ALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIH 162

Query: 483 KMAKR 487
              +R
Sbjct: 163 AFLRR 167



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 2/110 (1%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           ++G ++   AL F   MIH   TP + ++NSL+  L         + L ++L   G+ PD
Sbjct: 236 RTGNIQ--HALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPD 293

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
            ++ N L++  CK     DA + L R +   F P+ VT   L+     +G
Sbjct: 294 AITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEG 343


>gi|242038895|ref|XP_002466842.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
 gi|241920696|gb|EER93840.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
          Length = 1090

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 112/443 (25%), Positives = 204/443 (46%), Gaps = 48/443 (10%)

Query: 88  PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGR 147
            ++N++L     K  +   +C+ E +    +  D  + NI+++  C++   + AF+ L R
Sbjct: 190 ATYNTILHWYVKKGRFKAALCVLEDMERDSIQADIYTYNIMIDKLCRIKRSARAFLLLKR 249

Query: 148 ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207
           + +   +PD  T   LI G   +GK   A  +F   +    R  ++P+V  Y ++IDG C
Sbjct: 250 MRKDDLTPDECTYNTLINGFFGEGKINHARCVFNHML----RQTLVPSVATYTTMIDGYC 305

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
           ++  ++K   +  +M+  G+ P    Y++L+  YC       A       ++L    +  
Sbjct: 306 RNRRIDKALSVLSEMEITGVMPSELTYSALLNGYCKVSMLGPA---LDLMVDLKSRGITI 362

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
           N  +  I          +I+  C+   + KAK++   M   GI PDVV YS+LI+G C M
Sbjct: 363 NKTMCTI----------LIDGFCQVGEISKAKQILKSMLEDGIDPDVVTYSALINGMCRM 412

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---N 384
            ++ + +++   ++  G +P+   Y TLI  Y K   V+ AL  + ++   G+  +   +
Sbjct: 413 AKMHETKEILSRMQKSGILPNDVLYTTLICYYCKAGYVKVALKHFVDIYRRGLVANPVIH 472

Query: 385 SCILEA---------AELFRT-LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
           + +L A         AE FR  +       +   FNC++D  C   ++  A+ ++  + R
Sbjct: 473 NALLRAFYREGMITEAEHFRQYMSRMNISFNSVSFNCIIDSYCHRGKIVEAFSVYDDMVR 532

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKA-------YDLLPDMEEKIRECL-----------K 476
           YG  PNV TY  ++ GLC  G + +A        D+   ++EK    L           +
Sbjct: 533 YGHSPNVCTYQNLLRGLCQGGHLVQAKQFMFCLLDIPSAVDEKTFNALLLGICKYGTLDE 592

Query: 477 AIELLHKMAKRYVKPDEITVSIL 499
           A+++  KM K    PD  T +IL
Sbjct: 593 ALDICEKMVKNNCLPDIHTYTIL 615



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 107/442 (24%), Positives = 204/442 (46%), Gaps = 55/442 (12%)

Query: 71   ALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
            AL     M+     P   ++  LL  L   G+    +++   E +   GL  D ++ N L
Sbjct: 628  ALVMLQMMLEKGVVPDTVAYTCLLNGLINEGQVKAASYV-FQEIICKEGLYADCIAYNSL 686

Query: 129  MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
            MN + K   V+     +  + +    P+  +   L+ G   +G+F+++  L+   V    
Sbjct: 687  MNGYLKGGNVNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMV---- 742

Query: 189  RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD-MKGRGIYPDAFVYNSLI--------- 238
            R  + P+ + Y  +I GL + G ++ + V FL+ M   GI+PD  V++ LI         
Sbjct: 743  RKGIRPDNVTYRLLILGLSECGLID-IAVKFLEKMVLEGIFPDKLVFDILITSFSEKSKM 801

Query: 239  ----RVYCCA--VNWEDAKGNTSAALE--LHEEFVNGNGE-----LGVICHPDVLSYCSI 285
                R++ C   ++   +    SA +   + + +++ + E     L V   P+   Y ++
Sbjct: 802  HNALRLFNCMKCLHLSPSSKTFSAMINGLIRKNYLDQSHEVLHEMLQVGLQPNHTHYIAL 861

Query: 286  INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
            +N+ C+   +D+A  L  +MK+ GI+P  V  SS+I G C  G++++A  +F ++   G 
Sbjct: 862  VNAKCRVGEIDRAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGKLEEAVIVFSNMMRSGM 921

Query: 346  IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELD 405
            +P  +++ TL++S  K  K+ +AL L                       R +   + ++D
Sbjct: 922  VPTVATFTTLMHSLCKESKIADALHLK----------------------RLMELCRLKVD 959

Query: 406  LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
            +  +N L+ GLCK   +  A +L+ ++   G  PNV TY  +   +   G ++   +LL 
Sbjct: 960  VVSYNVLITGLCKDKHISDALDLYGEMKSKGLWPNVTTYITLTGAMYSTGRMQNGEELLE 1019

Query: 466  DMEEKIRECLKAIELLHKMAKR 487
            D+EE  R  + A + L  + +R
Sbjct: 1020 DIEE--RGLIPAFKQLENLERR 1039



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 114/563 (20%), Positives = 222/563 (39%), Gaps = 114/563 (20%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N   GE ++N A C FN+M+     P + ++ +++      +     + +   +   G++
Sbjct: 267 NGFFGEGKINHARCVFNHMLRQTLVPSVATYTTMIDGYCRNRRIDKALSVLSEMEITGVM 326

Query: 120 PDFVSLNILMNCFCK--MIG-----------------------VSDAFVALGRI------ 148
           P  ++ + L+N +CK  M+G                       + D F  +G I      
Sbjct: 327 PSELTYSALLNGYCKVSMLGPALDLMVDLKSRGITINKTMCTILIDGFCQVGEISKAKQI 386

Query: 149 ----LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
               L     PDVVT   LI G+C   K  E   + ++      +  ++PN + Y ++I 
Sbjct: 387 LKSMLEDGIDPDVVTYSALINGMCRMAKMHETKEILSRMQ----KSGILPNDVLYTTLIC 442

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC---------------------- 242
             CK G+V      F+D+  RG+  +  ++N+L+R +                       
Sbjct: 443 YYCKAGYVKVALKHFVDIYRRGLVANPVIHNALLRAFYREGMITEAEHFRQYMSRMNISF 502

Query: 243 ------CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
                 C ++    +G    A  ++++ V           P+V +Y +++  LC+   + 
Sbjct: 503 NSVSFNCIIDSYCHRGKIVEAFSVYDDMVRYGHS------PNVCTYQNLLRGLCQGGHLV 556

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +AK+    +       D   +++L+ G C  G +D+A  +   +    C+PD  +Y  L+
Sbjct: 557 QAKQFMFCLLDIPSAVDEKTFNALLLGICKYGTLDEALDICEKMVKNNCLPDIHTYTILL 616

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDN---SCILE----------AAELFRTLH-NTKF 402
           + + +  K+  AL +   M+  GV PD    +C+L           A+ +F+ +      
Sbjct: 617 SGFCRKGKILPALVMLQMMLEKGVVPDTVAYTCLLNGLINEGQVKAASYVFQEIICKEGL 676

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
             D   +N L++G  K   + +   +   + +    PN  +Y +++ G    G   K+  
Sbjct: 677 YADCIAYNSLMNGYLKGGNVNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLY 736

Query: 463 LLPDMEEK---------------IRECLK---AIELLHKMAKRYVKPDEITVSILEELLN 504
           L   M  K               + EC     A++ L KM    + PD++   IL    +
Sbjct: 737 LYKYMVRKGIRPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDKLVFDILITSFS 796

Query: 505 KDE---------NCHECMNLLPS 518
           +           NC +C++L PS
Sbjct: 797 EKSKMHNALRLFNCMKCLHLSPS 819



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 177/401 (44%), Gaps = 32/401 (7%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           TP   ++N+L+    G+    +  C+   +    L+P   +   +++ +C+   +  A  
Sbjct: 256 TPDECTYNTLINGFFGEGKINHARCVFNHMLRQTLVPSVATYTTMIDGYCRNRRIDKALS 315

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
            L  +      P  +T   L+ G C       A  L    V    R   I   +C   +I
Sbjct: 316 VLSEMEITGVMPSELTYSALLNGYCKVSMLGPALDL---MVDLKSRGITINKTMC-TILI 371

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
           DG C+ G ++K + +   M   GI PD   Y++LI   C      + K           E
Sbjct: 372 DGFCQVGEISKAKQILKSMLEDGIDPDVVTYSALINGMCRMAKMHETK-----------E 420

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
            ++   + G++  P+ + Y ++I   CK   V  A + F+D+  RG++ + V++++L+  
Sbjct: 421 ILSRMQKSGIL--PNDVLYTTLICYYCKAGYVKVALKHFVDIYRRGLVANPVIHNALLRA 478

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           +   G I +A      +       ++ S+N +I+SY    K+ EA S+Y +M+  G  P 
Sbjct: 479 FYREGMITEAEHFRQYMSRMNISFNSVSFNCIIDSYCHRGKIVEAFSVYDDMVRYGHSP- 537

Query: 384 NSC--------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
           N C              +++A +    L +    +D   FN L+ G+CK   L  A ++ 
Sbjct: 538 NVCTYQNLLRGLCQGGHLVQAKQFMFCLLDIPSAVDEKTFNALLLGICKYGTLDEALDIC 597

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           +K+ +    P++ TYT+++ G C +G I  A  +L  M EK
Sbjct: 598 EKMVKNNCLPDIHTYTILLSGFCRKGKILPALVMLQMMLEK 638



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 88/406 (21%), Positives = 156/406 (38%), Gaps = 62/406 (15%)

Query: 142 FVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYAS 201
           F +L RI+ +  S + V    LI+    + K  +A+     F   DC     P V C  S
Sbjct: 70  FTSLLRIISRFDSTNHVVFELLIKAYVKERKVLDAA--VAVFFMDDCGFKASP-VAC-NS 125

Query: 202 IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261
           I+  L ++G    V +   +   R    D    N L+   C           T+      
Sbjct: 126 ILKALVEEGESKYVWLFLRESLARKFPLDVTTCNILLNSLC-----------TNGEFRKA 174

Query: 262 EEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
           E+ +    ++   C  +  +Y +I++   K      A  +  DM+   I  D+  Y+ +I
Sbjct: 175 EDMLQ---KMKSCCLSNSATYNTILHWYVKKGRFKAALCVLEDMERDSIQADIYTYNIMI 231

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
           D  C + R   A  L   +  +   PD  +YNTLIN +    K+  A  ++  M+   + 
Sbjct: 232 DKLCRIKRSARAFLLLKRMRKDDLTPDECTYNTLINGFFGEGKINHARCVFNHMLRQTLV 291

Query: 382 PDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
           P                       +  +  ++DG C++ R+  A  +  ++   G  P+ 
Sbjct: 292 P----------------------SVATYTTMIDGYCRNRRIDKALSVLSEMEITGVMPSE 329

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDMEEK------------------IRECLKAIELLHK 483
           +TY+ ++ G C    +  A DL+ D++ +                  + E  KA ++L  
Sbjct: 330 LTYSALLNGYCKVSMLGPALDLMVDLKSRGITINKTMCTILIDGFCQVGEISKAKQILKS 389

Query: 484 MAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKL 529
           M +  + PD +T S L   + +    HE        LSR Q+   L
Sbjct: 390 MLEDGIDPDVVTYSALINGMCRMAKMHET----KEILSRMQKSGIL 431



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 113/260 (43%), Gaps = 22/260 (8%)

Query: 53   LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSER 112
            L+   SE SK     +++AL  FN M  +  +P   +F++++  L  K Y      +   
Sbjct: 791  LITSFSEKSK-----MHNALRLFNCMKCLHLSPSSKTFSAMINGLIRKNYLDQSHEVLHE 845

Query: 113  LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
            +  +GL P+      L+N  C++  +  AF     +      P  V    +IRGLC  GK
Sbjct: 846  MLQVGLQPNHTHYIALVNAKCRVGEIDRAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGK 905

Query: 173  FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
              EA  +F+  +    R  ++P V  + +++  LCK+  +     L   M+   +  D  
Sbjct: 906  LEEAVIVFSNMM----RSGMVPTVATFTTLMHSLCKESKIADALHLKRLMELCRLKVDVV 961

Query: 233  VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
             YN LI   C          + S AL+L+ E  +          P+V +Y ++  ++   
Sbjct: 962  SYNVLITGLC-------KDKHISDALDLYGEMKSKG------LWPNVTTYITLTGAMYST 1008

Query: 293  VLVDKAKELFLDMKSRGIIP 312
              +   +EL  D++ RG+IP
Sbjct: 1009 GRMQNGEELLEDIEERGLIP 1028


>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
 gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
          Length = 745

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 121/488 (24%), Positives = 212/488 (43%), Gaps = 62/488 (12%)

Query: 64  GEVELNDALCFFNYMIHMQPTPFMPSFNSLLG---ALAGKKYYVNFICLSERLNTIGLLP 120
           G+    DA+ F       +  P + SFN+++     L       +F C+   +   G+LP
Sbjct: 162 GQSRFRDAVLFLRQNDGKEFAPSVVSFNTIMSRYCKLGLADVAKSFFCM---MLKYGILP 218

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           D  S NIL++       + +A      + ++   PD+VT   + +G  + G  + A  + 
Sbjct: 219 DTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSGAREII 278

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            K +       + P+++ Y  +I G C+ G + +   L  D+   G   +  +Y+ L+  
Sbjct: 279 QKMLT---DEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSS 335

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
            C        +G    AL+L  E    N        PD+++Y  +I+ LCK   V +A +
Sbjct: 336 LC-------KRGQVDEALQLLYEMEANN------LQPDLVTYSILIHGLCKQGKVQQAIQ 382

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           L+ +M    I P+   +S ++ G C  G + DAR  F S+      PD + YN +I+ Y 
Sbjct: 383 LYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYV 442

Query: 361 KIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           K+  VEEA+ LY  +    + P                       +  FN L+ G CK+ 
Sbjct: 443 KLGDVEEAVRLYKRLRDKAITP----------------------SIVTFNSLIYGFCKNR 480

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE----------- 469
           ++  A  L + +  +G EP+ VTYT ++   C EG I K ++LL +M             
Sbjct: 481 KVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYT 540

Query: 470 -------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
                  K R+  ++++LL  M  + + PD+IT + + +   K ++  +   LL   L  
Sbjct: 541 VVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIH 600

Query: 523 NQEESKLT 530
           N E +  T
Sbjct: 601 NLEPTPAT 608



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 102/391 (26%), Positives = 182/391 (46%), Gaps = 35/391 (8%)

Query: 93  LLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKV 152
           LLG ++G +  +  +   E     GL PD V+  +L+   C+M  + +A      +L   
Sbjct: 267 LLGLMSGAREIIQKMLTDE-----GLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSG 321

Query: 153 FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFV 212
           F  +V+    L+  LC +G+  EA  L  +  A     N+ P+++ Y+ +I GLCK G V
Sbjct: 322 FQLNVILYSVLLSSLCKRGQVDEALQLLYEMEA----NNLQPDLVTYSILIHGLCKQGKV 377

Query: 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
            +   L+ +M    I+P++F ++ +++  C        KG  S A    +  +  N    
Sbjct: 378 QQAIQLYKEMCFNRIFPNSFAHSGILKGLC-------EKGMLSDARMYFDSLIMSN---- 426

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
               PDV  Y  +I+   K   V++A  L+  ++ + I P +V ++SLI G+C   ++ +
Sbjct: 427 --LRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVE 484

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------- 382
           AR+L  SI+  G  P   +Y TL+N+Y +   + +   L  EM    + P          
Sbjct: 485 ARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIK 544

Query: 383 ---DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
                  + E+ +L   +       D   +N ++   CK+  +R A+EL   +  +  EP
Sbjct: 545 GLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEP 604

Query: 440 NVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
              TY V+I GLC  G +E A  +L  ++++
Sbjct: 605 TPATYNVLIDGLCRYGDVEDADRVLVSLQDR 635



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 160/373 (42%), Gaps = 45/373 (12%)

Query: 95  GALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFS 154
           G L+  + Y + + +S       L PD    NI+++ + K+  V +A     R+  K  +
Sbjct: 410 GMLSDARMYFDSLIMS------NLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAIT 463

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
           P +VT   LI G C   K  EA  L          P+ +     Y ++++  C++G +NK
Sbjct: 464 PSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVT----YTTLMNAYCEEGNINK 519

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
           +  L L+M  + I P    Y  +I+  C     E++       ++L E+ +   G     
Sbjct: 520 LHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEES-------VQLLED-MRAKG----- 566

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
             PD ++Y +II   CK   + KA EL  DM    + P    Y+ LIDG C  G ++DA 
Sbjct: 567 LAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDAD 626

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
           ++ VS++         +Y T+I ++      + A+ ++ +M+  G               
Sbjct: 627 RVLVSLQDRNINLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEKG--------------- 671

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
                  FE+ +  ++ +++ LCK   +  A   F  +   G  P+   + +M+      
Sbjct: 672 -------FEVSIKDYSAVINRLCKRCLINEAKYYFCIMLSDGVSPDQEIFEMMLNAFHRA 724

Query: 455 GGIEKAYDLLPDM 467
           G +   ++LL  M
Sbjct: 725 GHVHSVFELLAVM 737



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 142/351 (40%), Gaps = 52/351 (14%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+DA  +F+ +I     P +  +N ++            + L +RL    + P  V+ N 
Sbjct: 412 LSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNS 471

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+  FCK   V +A   L  I      P  VT   L+   C +G   +   L  +    D
Sbjct: 472 LIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKD 531

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               + P V+ Y  +I GLCK   + +   L  DM+ +G+ PD   YN++I+ +C A   
Sbjct: 532 ----IEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKA--- 584

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
                +   A EL ++ +  N E      P   +Y  +I+ LC+   V+ A  + + ++ 
Sbjct: 585 ----KDMRKAFELLDDMLIHNLE------PTPATYNVLIDGLCRYGDVEDADRVLVSLQD 634

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLF---------VSIE----------------- 341
           R I    V Y+++I  +C+ G    A K+F         VSI+                 
Sbjct: 635 RNINLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEKGFEVSIKDYSAVINRLCKRCLINE 694

Query: 342 ---------SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
                    S+G  PD   +  ++N++ +   V     L   MI  G+  D
Sbjct: 695 AKYYFCIMLSDGVSPDQEIFEMMLNAFHRAGHVHSVFELLAVMIKFGLLHD 745



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 118/272 (43%), Gaps = 37/272 (13%)

Query: 277 PDVLSYCSIINSL-CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
           P + +Y S++ +L   D++ D    ++ D+K  G        S ++DG C   R  DA  
Sbjct: 116 PSIQTYNSLLYNLRHTDIMWD----VYNDIKDSGTPQSARTSSIIVDGLCGQSRFRDAVL 171

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN----------- 384
                + +   P   S+NT+++ Y K+   + A S +  M+  G+ PD            
Sbjct: 172 FLRQNDGKEFAPSVVSFNTIMSRYCKLGLADVAKSFFCMMLKYGILPDTYSYNILIHGLI 231

Query: 385 --SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK-LPRYGPEPNV 441
               + EA EL   +     + D+  +  +  G      +  A E+ +K L   G +P++
Sbjct: 232 VAGSMEEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDEGLKPDL 291

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHK 483
           VTYTV+ICG C  G IE+A  L  D+                    K  +  +A++LL++
Sbjct: 292 VTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYE 351

Query: 484 MAKRYVKPDEITVSILEELLNKDENCHECMNL 515
           M    ++PD +T SIL   L K     + + L
Sbjct: 352 MEANNLQPDLVTYSILIHGLCKQGKVQQAIQL 383


>gi|357474081|ref|XP_003607325.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508380|gb|AES89522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/381 (30%), Positives = 186/381 (48%), Gaps = 41/381 (10%)

Query: 89  SFNSLLGALAGKKYYVNFIC-LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGR 147
           ++N LL  L G+   VN  C L E++ + G+ P  VS N L+   CK   +  A+  L  
Sbjct: 431 TYNILLKWL-GELGKVNEACNLWEKMVSKGITPSLVSYNNLILGHCKKGCMDKAYSMLKS 489

Query: 148 ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207
           IL +   P+ VT   LI G   +G    A  +F + +A     N+ P    + ++I+GL 
Sbjct: 490 ILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMA----ANIAPTDHTFNTVINGLG 545

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
           K G V++ +    +   +G    +  YNS+I  +         +G   +AL  + E    
Sbjct: 546 KTGRVSETQDKLNNFIKQGFVSTSITYNSIIDGFF-------KEGAVDSALLAYREMC-- 596

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
             E G+   PDV++Y S+I+ LCK   +  A E+  DMK +G+  DVV YS+LIDG+C M
Sbjct: 597 --ESGI--SPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALIDGFCKM 652

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
             ++ A K F  +   G  P+T  YN++I+ +  +  +E AL+L+ EMI           
Sbjct: 653 HDMESASKFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQEMIK---------- 702

Query: 388 LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
                        K   DL V+  ++ GL K  +L  A +L+ ++      P++V YTV+
Sbjct: 703 ------------NKVPCDLQVYTSIIGGLLKEGKLSLALDLYSEMLSKDIVPDIVMYTVL 750

Query: 448 ICGLCIEGGIEKAYDLLPDME 468
           I GL   G +E A  +L +M+
Sbjct: 751 INGLSNNGQLENASKILKEMD 771



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 107/407 (26%), Positives = 173/407 (42%), Gaps = 78/407 (19%)

Query: 42  NSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGK- 100
           + ++ V     LLK+L E  K     +N+A   +  M+    TP + S+N+L+     K 
Sbjct: 424 HGITNVVTYNILLKWLGELGK-----VNEACNLWEKMVSKGITPSLVSYNNLILGHCKKG 478

Query: 101 ---KYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDV 157
              K Y     + ER    GL P+ V+  +L++ F K      AFV   +++    +P  
Sbjct: 479 CMDKAYSMLKSILER----GLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTD 534

Query: 158 VTLGCLIRGLCMQGKFTEASGLFTKFV----------------------AFD-------- 187
            T   +I GL   G+ +E       F+                      A D        
Sbjct: 535 HTFNTVINGLGKTGRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGAVDSALLAYRE 594

Query: 188 -CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C   + P+VI Y S+IDGLCK   +     +  DMK +G+  D   Y++LI  +C   +
Sbjct: 595 MCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALIDGFCKMHD 654

Query: 247 WEDAK----------------------------GNTSAALELHEEFVNGNGELGVICHPD 278
            E A                              N  AAL LH+E +       V C  D
Sbjct: 655 MESASKFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQEMIKNK----VPC--D 708

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
           +  Y SII  L K+  +  A +L+ +M S+ I+PD+V+Y+ LI+G    G++++A K+  
Sbjct: 709 LQVYTSIIGGLLKEGKLSLALDLYSEMLSKDIVPDIVMYTVLINGLSNNGQLENASKILK 768

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
            ++     P    YN LI    +   ++EA  L+ EM+  G+ PD++
Sbjct: 769 EMDGNNITPSVLVYNILIAGNFREGNLQEAFRLHDEMLDKGLVPDDT 815



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 163/352 (46%), Gaps = 37/352 (10%)

Query: 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
           F + + + D  V++G         +V+    L++G C+ G    A  LF + V       
Sbjct: 306 FVEALRLKDEMVSVG------LPMNVIVTRSLMKGYCVLGDVNLALQLFDEVV----EGG 355

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
           V+P+V+ ++ +I+G  K G + K   L+  MK  GI P+ F+ NSL+  +      E A 
Sbjct: 356 VVPDVVIFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLLEGFHEQNLLEHAY 415

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
           G       L +E V    E G+    +V++Y  ++  L +   V++A  L+  M S+GI 
Sbjct: 416 G-------LFDEAV----EHGI---TNVVTYNILLKWLGELGKVNEACNLWEKMVSKGIT 461

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           P +V Y++LI G+C  G +D A  +  SI   G  P+  +Y  LI+ + K    E A  +
Sbjct: 462 PSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLIDGFFKKGDSERAFVV 521

Query: 372 YGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
           + +M++  + P +               + E  +         F      +N ++DG  K
Sbjct: 522 FEQMMAANIAPTDHTFNTVINGLGKTGRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFK 581

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
              + SA   ++++   G  P+V+TYT +I GLC    I  A ++  DM+ K
Sbjct: 582 EGAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYK 633



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 127/513 (24%), Positives = 215/513 (41%), Gaps = 74/513 (14%)

Query: 2   PSSSPATSRTAFKVKPSSSLRNSKKPISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENS 61
           P S P+  +  F V   S   N K  +    + E        V TV+  + L+  LS NS
Sbjct: 52  PESQPSEKKNRFLVTLLSHKSNPKSALKFFHQVERKR---GFVKTVDFISLLIHILSSNS 108

Query: 62  KSGEVELNDALCFF-NYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           K+       +L F  N  +    TP               K +V   CL E     G   
Sbjct: 109 KTCS-----SLQFLLNNYVFGDATP-------------SAKVFVE--CLLECSGRYGFES 148

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           D    N L+  F ++  ++DA      +L     P V  +  L+  +  +    +A  L+
Sbjct: 149 DSRVFNYLLKSFVRVNKITDAVECFRTMLEHDLVPWVPIMNNLLTAMVRRNMVCDARQLY 208

Query: 181 TKFVAFDCRPNVIPNVICYA--SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
            + V      +      CY    ++    K+G   +V   F + KGRG+  DA  Y+ L+
Sbjct: 209 DEMVERGIYGD------CYTLHVVMRACMKEGKFEEVEKFFKEAKGRGLEVDAAAYSILV 262

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
           +  C  ++           L L  E +    E G +  P   +Y ++I +  K     +A
Sbjct: 263 QAVCRRLD-----------LNLACELLKEMREFGWV--PSKGTYTAVIVACVKQGNFVEA 309

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
             L  +M S G+  +V+V  SL+ GYC++G ++ A +LF  +   G +PD   ++ LIN 
Sbjct: 310 LRLKDEMVSVGLPMNVIVTRSLMKGYCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLING 369

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT---------LHNTKFELDLT-- 407
            SK+  +E+A  LY  M  MG++P+   +    E F           L +   E  +T  
Sbjct: 370 CSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLLEGFHEQNLLEHAYGLFDEAVEHGITNV 429

Query: 408 -VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             +N L+  L +  ++  A  L++K+   G  P++V+Y  +I G C +G ++KAY +L  
Sbjct: 430 VTYNILLKWLGELGKVNEACNLWEKMVSKGITPSLVSYNNLILGHCKKGCMDKAYSMLKS 489

Query: 467 MEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           + E                 R +KP+ +T ++L
Sbjct: 490 ILE-----------------RGLKPNAVTYTLL 505


>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
 gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
 gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
          Length = 578

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 113/416 (27%), Positives = 192/416 (46%), Gaps = 51/416 (12%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P   S+N L+        V  A  A    LR+  SPD+ T   +I GLC  G+  +A  +
Sbjct: 154 PSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDV 213

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN---KVRVLFLDMKGRGIYPDAFVYNS 236
                A+     + P+V  Y S+IDG CK G       V +L  +M   GI P A  +  
Sbjct: 214 AKDIKAW----GLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGV 269

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI  YC          NT+AA+ + EE      + G+     V++Y S+I+ LC +  V+
Sbjct: 270 LINGYC-------KNSNTAAAVRVFEEM----KQQGIAA--SVVTYNSLISGLCSEGKVE 316

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +  +L  +M+  G+ P+ + +  ++ G+C  G + DA      +      PD   YN LI
Sbjct: 317 EGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILI 376

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNS---CIL----------EAAELFRTLHNTKFE 403
           + Y ++ K+E+A+++   M   G+ P+ +   C++           A+ L   +     E
Sbjct: 377 DVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIE 436

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D+  +N L+  LC    +R A +L  ++   G EPN +TY  +I G C +G I+ AY++
Sbjct: 437 ADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEI 496

Query: 464 LPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEE 501
              ME+                  +I +  +A +LL++M  + + P+ IT   ++E
Sbjct: 497 RTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKE 552



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 157/396 (39%), Gaps = 57/396 (14%)

Query: 84  TPFMPSFNSLLGAL-----AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGV 138
            P + ++NSL+        AG  Y+V+   L + +   G+ P  V+  +L+N +CK    
Sbjct: 223 APSVATYNSLIDGYCKKGGAGNMYHVDM--LLKEMVEAGISPTAVTFGVLINGYCKNSNT 280

Query: 139 SDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVIC 198
           + A      + ++  +  VVT   LI GLC +GK  E   L  +         + PN I 
Sbjct: 281 AAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDL----GLSPNEIT 336

Query: 199 YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL 258
           +  ++ G CK G +         M  R + PD  +YN LI VY      ED       A+
Sbjct: 337 FGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMED-------AM 389

Query: 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS 318
            + E              P+V +Y  +I    +      A  L  +MK +GI  DVV Y+
Sbjct: 390 AVKEAMAKKG------ISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYN 443

Query: 319 SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
            LI   C  G +  A KL   +   G  P+  +YNT+I  +                   
Sbjct: 444 VLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFC------------------ 485

Query: 379 GVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
               D   I  A E+   +   +   ++  +N  +   C+  ++  A +L  ++      
Sbjct: 486 ----DKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLV 541

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC 474
           PN +TY  +      EG +EK Y   PD    IR C
Sbjct: 542 PNGITYETI-----KEGMMEKGYT--PD----IRGC 566



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 139/323 (43%), Gaps = 17/323 (5%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G   +         M+    +P   +F  L+            + + E +   G+   
Sbjct: 239 KGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAAS 298

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+ N L++  C    V +    +  +     SP+ +T GC+++G C +G   +A+    
Sbjct: 299 VVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADAN---- 354

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
            ++      NV P+V+ Y  +ID   + G +     +   M  +GI P+   YN LI  +
Sbjct: 355 DWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGF 414

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
             + +W  A G      E+ E+ +            DV++Y  +I +LC    V KA +L
Sbjct: 415 SRSGDWRSASGLLD---EMKEKGIEA----------DVVTYNVLIGALCCKGEVRKAVKL 461

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
             +M   G+ P+ + Y+++I G+C  G I  A ++   +E      +  +YN  I  + +
Sbjct: 462 LDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQ 521

Query: 362 IEKVEEALSLYGEMISMGVRPDN 384
           I K++EA  L  EM+   + P+ 
Sbjct: 522 IGKMDEANDLLNEMLDKCLVPNG 544



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 21/226 (9%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V  NIL++ + ++  + DA      + +K  SP+V T  CLI G    G +  ASGL
Sbjct: 367 PDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGL 426

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             +         +  +V+ Y  +I  LC  G V K   L  +M   G+ P+   YN++I+
Sbjct: 427 LDEMK----EKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQ 482

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH--PDVLSYCSIINSLCKDVLVDK 297
            +C        KGN  +A E+              C    +V++Y   I   C+   +D+
Sbjct: 483 GFC-------DKGNIKSAYEIRTRMEK--------CRKRANVVTYNVFIKYFCQIGKMDE 527

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
           A +L  +M  + ++P+ + Y ++ +G    G   D R   VS  SE
Sbjct: 528 ANDLLNEMLDKCLVPNGITYETIKEGMMEKGYTPDIRGCTVSQASE 573



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 72/171 (42%), Gaps = 4/171 (2%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++ DA+     M     +P + ++N L+   +    + +   L + +   G+  D V+ N
Sbjct: 384 KMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYN 443

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +L+   C    V  A   L  +      P+ +T   +I+G C +G    A  + T+    
Sbjct: 444 VLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRME-- 501

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            CR     NV+ Y   I   C+ G +++   L  +M  + + P+   Y ++
Sbjct: 502 KCRKRA--NVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETI 550


>gi|449467169|ref|XP_004151297.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Cucumis sativus]
 gi|449518833|ref|XP_004166440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Cucumis sativus]
          Length = 609

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 115/468 (24%), Positives = 204/468 (43%), Gaps = 48/468 (10%)

Query: 39  LHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALA 98
           L +NS  TV  +TKL+  L E  K  E +       FN ++     P   ++ +L+ AL 
Sbjct: 49  LGNNSCGTVRSRTKLMNILVERGKPQEAQF-----IFNSLVEQGHRPTTVTYTALVAALT 103

Query: 99  GKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVV 158
            +K +     L   +   G+ PD + LN ++N F +   V +A     ++      P   
Sbjct: 104 RQKRFKAISGLLSEMEETGIKPDSILLNAIINAFSESGNVKEAMEIFQKMEESGCKPTTS 163

Query: 159 TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVL 218
           T   LI+G  +  K  E+  L           N+ PN   Y  ++  LCK   + +   +
Sbjct: 164 TFNTLIKGYGIIRKPEESMKLLELMTRTT---NLKPNNRTYNILVGALCKKKSIKEAWNV 220

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD 278
              M   G+ PD   YN+L R Y          G T+ A  +  + +N         +P+
Sbjct: 221 VHQMLASGVQPDVVTYNTLARAYA-------QDGETNKAESIIVDMLNKK------VNPN 267

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
             +   I+   C+   + +A  +   M+  GI P++V+++SLI G+  +G  D   K   
Sbjct: 268 ERTCGIIVGGYCEQGNLAEALRVVYRMRDLGIHPNLVIFNSLIKGFLDIGDSDGVDKALT 327

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398
            +E  G  PD  +++T++N +S   ++++   ++ +M+  G+ P                
Sbjct: 328 MMEESGVKPDVITFSTIMNGWSSAGRMDKCQEIFDDMLKSGIEP---------------- 371

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
                 D+ VF+ L  G  ++     A  L   + +YG  PNVV +T +I G C  G +E
Sbjct: 372 ------DIHVFSILAKGFVRAGEPVKAESLLNFMSKYGVRPNVVIFTTIISGWCTAGKME 425

Query: 459 KAYDLLPDM-EEKIRECLKAIELL---HKMAKRYVKPDEITVSILEEL 502
           KA+ +   M +  +   LK  E L   +  AK+  + +EI + ++EE+
Sbjct: 426 KAWKVFEHMCDMDVSPNLKTFETLIWGYGEAKQPWRAEEI-LQMMEEM 472



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 166/375 (44%), Gaps = 59/375 (15%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLL---GALAGKKYYVNFICLSERLNTIG 117
           S+SG V+  +A+  F  M      P   +FN+L+   G +   +  +  + L  R  T  
Sbjct: 138 SESGNVK--EAMEIFQKMEESGCKPTTSTFNTLIKGYGIIRKPEESMKLLELMTR--TTN 193

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           L P+  + NIL+   CK   + +A+  + ++L     PDVVT   L R     G+  +A 
Sbjct: 194 LKPNNRTYNILVGALCKKKSIKEAWNVVHQMLASGVQPDVVTYNTLARAYAQDGETNKAE 253

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            +    +       V PN      I+ G C+ G + +   +   M+  GI+P+  ++NSL
Sbjct: 254 SIIVDML----NKKVNPNERTCGIIVGGYCEQGNLAEALRVVYRMRDLGIHPNLVIFNSL 309

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           I+ +   ++  D+ G    AL + EE        GV   PDV+++ +I+N       +DK
Sbjct: 310 IKGF---LDIGDSDG-VDKALTMMEES-------GV--KPDVITFSTIMNGWSSAGRMDK 356

Query: 298 AKELFLDMKSRGIIPD-----------------------------------VVVYSSLID 322
            +E+F DM   GI PD                                   VV+++++I 
Sbjct: 357 CQEIFDDMLKSGIEPDIHVFSILAKGFVRAGEPVKAESLLNFMSKYGVRPNVVIFTTIIS 416

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
           G+C  G+++ A K+F  +      P+  ++ TLI  Y + ++   A  +   M  M V P
Sbjct: 417 GWCTAGKMEKAWKVFEHMCDMDVSPNLKTFETLIWGYGEAKQPWRAEEILQMMEEMNVVP 476

Query: 383 DNSCILEAAELFRTL 397
           +NS +   +E +R++
Sbjct: 477 ENSTLKLVSEAWRSI 491



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 123/317 (38%), Gaps = 81/317 (25%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P   ++N L+GAL  KK       +  ++   G+ PD V+ N L   + +    + A   
Sbjct: 196 PNNRTYNILVGALCKKKSIKEAWNVVHQMLASGVQPDVVTYNTLARAYAQDGETNKAESI 255

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI----------- 193
           +  +L K  +P+  T G ++ G C QG   EA  +  +       PN++           
Sbjct: 256 IVDMLNKKVNPNERTCGIIVGGYCEQGNLAEALRVVYRMRDLGIHPNLVIFNSLIKGFLD 315

Query: 194 --------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233
                               P+VI +++I++G    G ++K + +F DM   GI PD  V
Sbjct: 316 IGDSDGVDKALTMMEESGVKPDVITFSTIMNGWSSAGRMDKCQEIFDDMLKSGIEPDIHV 375

Query: 234 YNSLIRVYCCAVNWEDAKGNTSAALELH-EEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
           ++ L            AKG   A   +  E  +N   + GV   P+V+ + +II+  C  
Sbjct: 376 FSIL------------AKGFVRAGEPVKAESLLNFMSKYGV--RPNVVIFTTIISGWCTA 421

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC--------------------------- 325
             ++KA ++F  M    + P++  + +LI GY                            
Sbjct: 422 GKMEKAWKVFEHMCDMDVSPNLKTFETLIWGYGEAKQPWRAEEILQMMEEMNVVPENSTL 481

Query: 326 --------LMGRIDDAR 334
                    +G ++DA+
Sbjct: 482 KLVSEAWRSIGMVNDAK 498



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/245 (20%), Positives = 103/245 (42%), Gaps = 40/245 (16%)

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
           V S   ++N L +     +A+ +F  +  +G  P  V Y++L+       R      L  
Sbjct: 57  VRSRTKLMNILVERGKPQEAQFIFNSLVEQGHRPTTVTYTALVAALTRQKRFKAISGLLS 116

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398
            +E  G  PD+   N +IN++S+   V+EA+ ++ +M   G +P  S             
Sbjct: 117 EMEETGIKPDSILLNAIINAFSESGNVKEAMEIFQKMEESGCKPTTS------------- 163

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP-EPNVVTYTVMICGLCIEGGI 457
                     FN L+ G     +   + +L + + R    +PN  TY +++  LC +  I
Sbjct: 164 ---------TFNTLIKGYGIIRKPEESMKLLELMTRTTNLKPNNRTYNILVGALCKKKSI 214

Query: 458 EKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLP 517
           ++A++++                 H+M    V+PD +T + L     +D   ++  +++ 
Sbjct: 215 KEAWNVV-----------------HQMLASGVQPDVVTYNTLARAYAQDGETNKAESIIV 257

Query: 518 SFLSR 522
             L++
Sbjct: 258 DMLNK 262


>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
 gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
          Length = 684

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/467 (24%), Positives = 206/467 (44%), Gaps = 60/467 (12%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           +A    + M+ M     + +FN ++  L G  +      L +R+   G  P  V+   L+
Sbjct: 233 EAATLLDEMLLMGCAADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLL 292

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
              C+     +A+  LGR    V   +VV L  +IRG   +GK   A+ L+    +  C 
Sbjct: 293 RGLCRTRQADEAYAMLGR----VPEVNVVMLNTVIRGCLAEGKLARATELYEMMGSKGCP 348

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
           P+V      Y  ++ GLCK G       +  +M+ +G  P+   Y++L+  +C    W+D
Sbjct: 349 PDVH----TYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDD 404

Query: 250 AKGN----TSAALELHEEFVNG-------NGELGVI-----------CHPDVLSYCSIIN 287
           A+      ++    ++ +  NG       +G+L              C PD+ +Y +II 
Sbjct: 405 ARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIY 464

Query: 288 SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
            LC +  +D+A+ +F ++   G++ + + Y++LI      GR  +  +L   +   GC  
Sbjct: 465 HLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPL 524

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN-------------SCILEAAELF 394
           D  SYN LI +  K   V+ ++ L  EM++ G++P+N               + +A EL 
Sbjct: 525 DVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELS 584

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
           + + N     D+  +N L++GLCK     +A  L +KLP     P++VTY ++I   C  
Sbjct: 585 KEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHC-- 642

Query: 455 GGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEE 501
                          K+R    A  LL K     + P+E T  ++ +
Sbjct: 643 ---------------KVRLLDDASMLLDKAVSGGIVPNERTWGMMVQ 674



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 122/497 (24%), Positives = 195/497 (39%), Gaps = 92/497 (18%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P F S N +++   +    +DA +   R+LR    P   T G   R LC  G+  +A  L
Sbjct: 143 PSFRSYNAVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCRLGRARDALAL 202

Query: 180 FTKFVAFDCRPNVI-------------------------------PNVICYASIIDGLCK 208
                   C P+ +                                +V  +  ++ GLC 
Sbjct: 203 LRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAADVNTFNDVVLGLCG 262

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED------------------- 249
            G V +   L   M   G  P    Y  L+R  C     ++                   
Sbjct: 263 LGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAMLGRVPEVNVVMLNTV 322

Query: 250 -----AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                A+G  + A EL+E      G  G  C PDV +Y  +++ LCK      A  +  +
Sbjct: 323 IRGCLAEGKLARATELYEMM----GSKG--CPPDVHTYNILMHGLCKLGRCGSAVRMLDE 376

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M+ +G  P++V YS+L+  +C  G  DDAR +   + ++G   ++  YN +I +  K  K
Sbjct: 377 MEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGK 436

Query: 365 VEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNC 411
           ++EA+ L  EM S G +PD             N  + EA  +F  L       +   +N 
Sbjct: 437 LDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNT 496

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK- 470
           L+  L  S R +    L  ++  +G   +VV+Y  +I  LC EG ++++  LL +M  K 
Sbjct: 497 LIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKG 556

Query: 471 -----------IRECLK------AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECM 513
                      I E  K      A+EL  +M  + + PD +T + L   L K    H  +
Sbjct: 557 IKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAAL 616

Query: 514 NLLPSFLSRNQEESKLT 530
           NLL    + N     +T
Sbjct: 617 NLLEKLPNENVHPDIVT 633



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 126/274 (45%), Gaps = 19/274 (6%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
            +N ++ AL         + L + + + G  PD  + N ++   C    + +A    G +
Sbjct: 423 GYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNL 482

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP-NVICYASIIDGLC 207
           L +    + +T   LI  L   G++ E   L  + V   C     P +V+ Y  +I  LC
Sbjct: 483 LEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGC-----PLDVVSYNGLIKALC 537

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
           K+G V++  +L  +M  +GI P+ F YN LI   C A       G    ALEL +E +N 
Sbjct: 538 KEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKA-------GKVRDALELSKEMLNQ 590

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
                    PD+++Y ++IN LCK      A  L   + +  + PD+V Y+ LI  +C +
Sbjct: 591 G------LTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKV 644

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
             +DDA  L     S G +P+  ++  ++ ++ +
Sbjct: 645 RLLDDASMLLDKAVSGGIVPNERTWGMMVQNFVR 678



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 2/114 (1%)

Query: 57  LSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           ++E  K+G+V   DAL     M++   TP + ++N+L+  L    +    + L E+L   
Sbjct: 568 INELCKAGKVR--DALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNE 625

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
            + PD V+ NIL++  CK+  + DA + L + +     P+  T G +++    Q
Sbjct: 626 NVHPDIVTYNILISWHCKVRLLDDASMLLDKAVSGGIVPNERTWGMMVQNFVRQ 679


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 170/366 (46%), Gaps = 39/366 (10%)

Query: 90  FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149
           FN L+         +N   + + ++  GL P  VS N L++ +C+   V + FV    + 
Sbjct: 229 FNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFVLKSVME 288

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD 209
            +  SPDV T   LI GLC + +  EA+GLF +     C   ++PN + + ++IDG CK 
Sbjct: 289 SERISPDVFTYSALINGLCKESRVEEANGLFDEM----CEMGLVPNGVTFTTLIDGQCKH 344

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
           G ++     F  MK RGI PD   YN+LI   C         G+   A +L  E + GNG
Sbjct: 345 GKIDLALRNFEIMKDRGIRPDLITYNALINGLC-------RDGDLKEARKLLNEMI-GNG 396

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
                  PD +++ ++++  CKD  +D A E+   M   GI  D V +++LI G C  GR
Sbjct: 397 -----FKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGR 451

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE 389
           + DA ++   + S G  PD  +Y  +I+ + K   V+    L  EM   G  P       
Sbjct: 452 VRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVP------- 504

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
                           +  +N L++G CK  ++++A  L   +      PN +T+ +++ 
Sbjct: 505 ---------------GVVTYNALMNGFCKQGQMKNAKMLLHAMLNMEVVPNDITFNILLD 549

Query: 450 GLCIEG 455
           G C  G
Sbjct: 550 GHCKHG 555



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 105/337 (31%), Positives = 161/337 (47%), Gaps = 44/337 (13%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           PNV  +  ++ G CK G V   R++F ++  RG+ P    +N+LI  YC + N E     
Sbjct: 224 PNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVE----- 278

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
                   E FV  +        PDV +Y ++IN LCK+  V++A  LF +M   G++P+
Sbjct: 279 --------EGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPN 330

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
            V +++LIDG C  G+ID A + F  ++  G  PD  +YN LIN   +   ++EA  L  
Sbjct: 331 GVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLN 390

Query: 374 EMISMGVRPD--------NSC-----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           EMI  G +PD        + C     +  A E+   +     ELD   F  L+ GLC+  
Sbjct: 391 EMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDG 450

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIR-------- 472
           R+R A  + K +   G +P+  TYT++I   C +G ++    LL +M+   R        
Sbjct: 451 RVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYN 510

Query: 473 ----------ECLKAIELLHKMAKRYVKPDEITVSIL 499
                     +   A  LLH M    V P++IT +IL
Sbjct: 511 ALMNGFCKQGQMKNAKMLLHAMLNMEVVPNDITFNIL 547



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 152/334 (45%), Gaps = 39/334 (11%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + SFN+L+      K       L   + +  + PD  + + L+N  CK   V +A   
Sbjct: 259 PSVVSFNTLISGYCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGL 318

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
              +      P+ VT   LI G C  GK   A      F     R  + P++I Y ++I+
Sbjct: 319 FDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLA---LRNFEIMKDR-GIRPDLITYNALIN 374

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           GLC+DG + + R L  +M G G  PD   + +L+   CC        G+  +ALE+ +  
Sbjct: 375 GLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDG-CC------KDGDMDSALEIKDRM 427

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           V    EL      D +++ ++I+ LC+D  V  A+ +  DM S G  PD   Y+ +ID +
Sbjct: 428 VEEGIEL------DDVAFTALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCF 481

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           C  G +    KL   ++ +G +P   +YN L+N + K  +++ A  L   M++M V P+ 
Sbjct: 482 CKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQGQMKNAKMLLHAMLNMEVVPN- 540

Query: 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
                               D+T FN L+DG CK
Sbjct: 541 --------------------DIT-FNILLDGHCK 553



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 126/267 (47%), Gaps = 30/267 (11%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+V  +  +++  CK   V  A+ +F ++  RG+ P VV +++LI GYC    +++   L
Sbjct: 224 PNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFVL 283

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSCI 387
              +ESE   PD  +Y+ LIN   K  +VEEA  L+ EM  MG+ P         D  C 
Sbjct: 284 KSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCK 343

Query: 388 LEAAEL----FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
               +L    F  + +     DL  +N L++GLC+   L+ A +L  ++   G +P+ +T
Sbjct: 344 HGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKIT 403

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELL 503
           +T ++ G C +G          DM+        A+E+  +M +  ++ D++  + L   L
Sbjct: 404 FTTLMDGCCKDG----------DMDS-------ALEIKDRMVEEGIELDDVAFTALISGL 446

Query: 504 NKDENCHECMNLLPSFLSRNQEESKLT 530
            +D    +   +L   LS   +    T
Sbjct: 447 CRDGRVRDAERMLKDMLSAGHKPDDPT 473



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 105/231 (45%), Gaps = 39/231 (16%)

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           E +L++   G  P+V +++ L+ G+C +G + +AR +F  I   G  P   S+NTLI+ Y
Sbjct: 212 EFYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGY 271

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            + + VEE   L   M S  + PD                      +  ++ L++GLCK 
Sbjct: 272 CRSKNVEEGFVLKSVMESERISPD----------------------VFTYSALINGLCKE 309

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIE 479
            R+  A  LF ++   G  PN VT+T +I G C  G I+ A              L+  E
Sbjct: 310 SRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLA--------------LRNFE 355

Query: 480 LLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           +   M  R ++PD IT + L   L +D +  E   LL   +    +  K+T
Sbjct: 356 I---MKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKIT 403


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 137/473 (28%), Positives = 212/473 (44%), Gaps = 78/473 (16%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKM----IGV 138
           P+P +  FNSL+ A      Y     L +++   G  P +V  NIL+   C        V
Sbjct: 110 PSPRI--FNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDV 167

Query: 139 SD-AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
            D A  A G +L      + V +    R LC  GKF +A  +  + ++       IP+  
Sbjct: 168 LDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMS----KGFIPDTS 223

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            Y+ +I  LC    V K   LF +MK  GI PD +VY +LI  +C A   E A+      
Sbjct: 224 TYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARN----- 278

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
               E   +G       C P+V++Y ++I++  K   V KA E++  M S+G  P++V Y
Sbjct: 279 -WFDEMERDG-------CAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTY 330

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGC-IPDTS----------------SYNTLINSYS 360
           ++LIDG C  G+I+ A +++  ++ E   IPD                  +Y  L++   
Sbjct: 331 TALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLC 390

Query: 361 KIEKVEEALSLYGEMISMGVRP---------DNSC----ILEAAELFRTLHNTKFELDLT 407
           K  +V+EA  L   M   G  P         D  C    + EA E+F T+    ++ ++ 
Sbjct: 391 KAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVY 450

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            ++ L+D L K  RL  A ++  K+      PNVV YT MI GLC  G  ++AY L+  M
Sbjct: 451 TYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMM 510

Query: 468 EEK---------------------IRECLKAIELLHKMAKRYVKPDEITVSIL 499
           EEK                     + +CL   ELL +M+ +   P+ +T  +L
Sbjct: 511 EEKGCNPNVVTYTAMIDGFGKSGRVEKCL---ELLQQMSSKGCAPNFVTYRVL 560



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 190/412 (46%), Gaps = 53/412 (12%)

Query: 75  FNYMIHMQPTPFMP---SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131
           +N +  M    F+P   +++ ++G L           L + +   G+ PD      L++ 
Sbjct: 207 YNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDS 266

Query: 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
           FCK   +  A      + R   +P+VVT   LI       K ++A+ ++   ++  C PN
Sbjct: 267 FCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPN 326

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI-YPDAFVYNSLIRVYCCAVNWEDA 250
           ++     Y ++IDGLCK G + K   ++  MK   +  PD                    
Sbjct: 327 IVT----YTALIDGLCKAGKIEKASQIYKIMKKENVEIPD-------------------- 362

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
                  +++H   V+G         P+V +Y ++++ LCK   V +A++L   M   G 
Sbjct: 363 -------VDMHFRVVDGASN-----EPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGC 410

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
            P+ VVY +LIDG C  G++D+A+++F ++   G  P+  +Y++LI+   K ++++ AL 
Sbjct: 411 EPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALK 470

Query: 371 LYGEMISMGVRP---------DNSCIL----EAAELFRTLHNTKFELDLTVFNCLVDGLC 417
           +  +M+     P         D  C +    EA +L   +       ++  +  ++DG  
Sbjct: 471 VLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFG 530

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           KS R+    EL +++   G  PN VTY V+I   C  G +++A+ LL +M++
Sbjct: 531 KSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQ 582



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 119/451 (26%), Positives = 184/451 (40%), Gaps = 103/451 (22%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           ++T+G   D  +L    +  CK     +A   L  + ++ F PD V    +I GLC    
Sbjct: 1   MSTMGYRMDEFTLGCFAHSLCKSGKWREA---LSLLEKEEFVPDTVLYTKMISGLCEASL 57

Query: 173 FTEASGLFTKFVAFDCRPNVI-------------------------------PNVICYAS 201
           F EA    T+  A  C PNV+                               P+   + S
Sbjct: 58  FEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNS 117

Query: 202 IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261
           ++   C+ G       L   M   G  P   VYN LI   C       ++      L+L 
Sbjct: 118 LVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGIC------SSEEPGKDVLDLA 171

Query: 262 EEFVNGNGELGVICH---------------------------------PDVLSYCSIINS 288
           E+      E GV+ +                                 PD  +Y  +I  
Sbjct: 172 EKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGY 231

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           LC    V+KA +LF +MK  GI PDV VY++LID +C  G I+ AR  F  +E +GC P+
Sbjct: 232 LCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPN 291

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC----ILEAAELFR 395
             +Y  LI++Y K  KV +A  +Y  M+S G  P         D  C    I +A+++++
Sbjct: 292 VVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYK 351

Query: 396 TLHNTKFEL-----------------DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
            +     E+                 ++  +  LVDGLCK+++++ A +L K +   G E
Sbjct: 352 IMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCE 411

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           PN V Y  +I G C  G +++A ++   M E
Sbjct: 412 PNHVVYDALIDGCCKAGKLDEAQEVFTTMLE 442



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 126/479 (26%), Positives = 203/479 (42%), Gaps = 81/479 (16%)

Query: 51  TKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLS 110
           +K++ YL   SK     +  A   F  M      P +  + +L+ +     +        
Sbjct: 226 SKVIGYLCNASK-----VEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWF 280

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           + +   G  P+ V+   L++ + K   VS A      +L K  +P++VT   LI GLC  
Sbjct: 281 DEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKA 340

Query: 171 GKFTEASGLFT--------------KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVR 216
           GK  +AS ++                F   D   N  PNV  Y +++DGLCK   V + R
Sbjct: 341 GKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNE-PNVFTYGALVDGLCKAYQVKEAR 399

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            L   M   G  P+  VY++LI   C A   ++A+   +  LE   +             
Sbjct: 400 DLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYD------------- 446

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+V +Y S+I+ L KD  +D A ++   M      P+VV+Y+ +IDG C +G+ D+A KL
Sbjct: 447 PNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKL 506

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------NSC-- 386
            V +E +GC P+  +Y  +I+ + K  +VE+ L L  +M S G  P+        N C  
Sbjct: 507 MVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCS 566

Query: 387 ---ILEAAELFRTLHNT--------------------------KFELD-------LTVFN 410
              + EA +L   +  T                           FE+          V+ 
Sbjct: 567 TGLLDEAHKLLEEMKQTYWPRHVAGYRKVIEGFNREFIASLYLSFEISENDSVPVAPVYR 626

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGP--EPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            L+D   K+ RL  A EL ++L  + P    N   +  +I  L +    +KA++L  DM
Sbjct: 627 VLIDNFIKAGRLEIALELNEELSSFSPFSAANQNIHITLIENLSLAHKADKAFELYADM 685



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 130/336 (38%), Gaps = 79/336 (23%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+  +   L++  CK   V +A   L  +  +   P+ V    LI G C  GK  EA  +
Sbjct: 377 PNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEV 436

Query: 180 FTKFVAFDCRPNV-------------------------------IPNVICYASIIDGLCK 208
           FT  +     PNV                                PNV+ Y  +IDGLCK
Sbjct: 437 FTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCK 496

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
            G  ++   L + M+ +G  P+   Y ++I  +          G     LEL ++  +  
Sbjct: 497 VGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGF-------GKSGRVEKCLELLQQMSSKG 549

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS----------RGII------- 311
                 C P+ ++Y  +IN  C   L+D+A +L  +MK           R +I       
Sbjct: 550 ------CAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQTYWPRHVAGYRKVIEGFNREF 603

Query: 312 ----------------PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG--CIPDTSSYN 353
                           P   VY  LID +   GR++ A +L   + S       + + + 
Sbjct: 604 IASLYLSFEISENDSVPVAPVYRVLIDNFIKAGRLEIALELNEELSSFSPFSAANQNIHI 663

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE 389
           TLI + S   K ++A  LY +MIS G  P+ S ++ 
Sbjct: 664 TLIENLSLAHKADKAFELYADMISRGSIPELSILVH 699



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 85/198 (42%), Gaps = 27/198 (13%)

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           +SLCK     K +E    ++    +PD V+Y+ +I G C     ++A      + +  C+
Sbjct: 18  HSLCKS---GKWREALSLLEKEEFVPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCL 74

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406
           P+  +Y  L+      EK+     +   MI+ G  P                        
Sbjct: 75  PNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPR--------------------- 113

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
            +FN LV   C+S     A++L KK+ + G +P  V Y ++I G+C     E   D+L  
Sbjct: 114 -IFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGIC--SSEEPGKDVLDL 170

Query: 467 MEEKIRECLKAIELLHKM 484
            E+   E L+A  +L+K+
Sbjct: 171 AEKAYGEMLEAGVVLNKV 188



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 126/308 (40%), Gaps = 50/308 (16%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGAL-AGKKYYVNFICLSERLNTIGLLPDFVSL 125
           +L++A   F  M+     P + +++SL+  L   K+  +    LS+ L      P+ V  
Sbjct: 429 KLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLEN-SCAPNVVIY 487

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
             +++  CK+    +A+  +  +  K  +P+VVT   +I G    G+  +   L  +  +
Sbjct: 488 TEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSS 547

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV-YNSLIR----- 239
             C PN +     Y  +I+  C  G +++   L  +MK +  +P     Y  +I      
Sbjct: 548 KGCAPNFVT----YRVLINHCCSTGLLDEAHKLLEEMK-QTYWPRHVAGYRKVIEGFNRE 602

Query: 240 ---------------------VYCCAVNWEDAKGNTSAALELHEE------FVNGNGELG 272
                                VY   ++     G    ALEL+EE      F   N  + 
Sbjct: 603 FIASLYLSFEISENDSVPVAPVYRVLIDNFIKAGRLEIALELNEELSSFSPFSAANQNIH 662

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
           +          ++I +L      DKA EL+ DM SRG IP++ +   LI G   + R ++
Sbjct: 663 I----------TLIENLSLAHKADKAFELYADMISRGSIPELSILVHLIKGLLRVNRWEE 712

Query: 333 ARKLFVSI 340
           A +L  SI
Sbjct: 713 ALQLLDSI 720


>gi|326493766|dbj|BAJ85345.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 671

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/404 (28%), Positives = 188/404 (46%), Gaps = 48/404 (11%)

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           + V+   L+N +C+   ++DA   L  I     +PD  T   ++ GLC   ++ +A  L 
Sbjct: 179 NVVTYTTLINGYCRSGRLADA---LALIASMPVAPDTYTYNTVLMGLCGARQWEDAEALM 235

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            + V   C PN +     +A+ I   C++G +++   L   M   G  PD  +Y++L   
Sbjct: 236 AEMVRNHCPPNEVT----FATQIRAFCQNGLLDRAVQLLDRMPQYGCTPDVVIYSTL--- 288

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
               VN    +G    A+EL           G++C P+ + Y + +  LC     +   +
Sbjct: 289 ----VNGFSEQGRVDDAIELLN---------GMLCKPNTICYNAALKGLCIAQRWEDVGQ 335

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           L ++M  +  +P+   +S L    C  G +D A ++   +   GC PD   YNTLI S+S
Sbjct: 336 LIVEMVRKDCLPNEATFSMLTSCLCQNGLVDCAMEVLEQMHKYGCRPDAVIYNTLIYSFS 395

Query: 361 KIEKVEEALSLYGEM------ISMGVRPDNSCILE----AAELFRTLHNTKFELDLTVFN 410
           +  +V++AL L   M      IS        C  E    A EL   +      L    FN
Sbjct: 396 EQGRVDDALKLLNSMPCSPDVISFNAALKGLCRAERWDDAEELIVQMLREDCPLIEMTFN 455

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            L+D LC++ R+ +A E+F+++P+YG  P++VTY+ +I GL  +G +E A +L   M  K
Sbjct: 456 ILIDSLCQNGRVNNAIEVFEQMPKYGCTPDIVTYSSLINGLSEQGLVESAIELFQSMPCK 515

Query: 471 -----IRECLKAI----------ELLHKMAKRYVKPDEITVSIL 499
                    LK +          EL+  MA++   P+EIT +IL
Sbjct: 516 PDIFGYNAVLKGLCRAARWEDAGELISNMARKDCPPNEITFNIL 559



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 111/417 (26%), Positives = 188/417 (45%), Gaps = 39/417 (9%)

Query: 64  GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV 123
           G  +  DA      M+     P   +F + + A          + L +R+   G  PD V
Sbjct: 224 GARQWEDAEALMAEMVRNHCPPNEVTFATQIRAFCQNGLLDRAVQLLDRMPQYGCTPDVV 283

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
             + L+N F +   V DA   L  +L K   P+ +     ++GLC+  ++ +   L  + 
Sbjct: 284 IYSTLVNGFSEQGRVDDAIELLNGMLCK---PNTICYNAALKGLCIAQRWEDVGQLIVEM 340

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
           V  DC    +PN   ++ +   LC++G V+    +   M   G  PDA +YN+LI  +  
Sbjct: 341 VRKDC----LPNEATFSMLTSCLCQNGLVDCAMEVLEQMHKYGCRPDAVIYNTLIYSF-- 394

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                  +G    AL+L              C PDV+S+ + +  LC+    D A+EL +
Sbjct: 395 -----SEQGRVDDALKLLNSMP---------CSPDVISFNAALKGLCRAERWDDAEELIV 440

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            M         + ++ LID  C  GR+++A ++F  +   GC PD  +Y++LIN  S+  
Sbjct: 441 QMLREDCPLIEMTFNILIDSLCQNGRVNNAIEVFEQMPKYGCTPDIVTYSSLINGLSEQG 500

Query: 364 KVEEALSLYGEMISMGVRPD----NSCIL---------EAAELFRTLHNTKFELDLTVFN 410
            VE A+ L+    SM  +PD    N+ +          +A EL   +       +   FN
Sbjct: 501 LVESAIELFQ---SMPCKPDIFGYNAVLKGLCRAARWEDAGELISNMARKDCPPNEITFN 557

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            L++ LC+   +  A E+F+++P+YG  P++ TY  +I G   +G ++ A  LL  M
Sbjct: 558 ILINSLCQKGLVDRAIEVFEQMPKYGSTPDIFTYNALINGFSEQGRLDDARRLLSTM 614



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 140/282 (49%), Gaps = 23/282 (8%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           LN++   PD +S N  +   C+     DA   + ++LR+      +T   LI  LC  G+
Sbjct: 407 LNSMPCSPDVISFNAALKGLCRAERWDDAEELIVQMLREDCPLIEMTFNILIDSLCQNGR 466

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
              A  +F +   + C     P+++ Y+S+I+GL + G V     LF  M  +   PD F
Sbjct: 467 VNNAIEVFEQMPKYGC----TPDIVTYSSLINGLSEQGLVESAIELFQSMPCK---PDIF 519

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            YN++++  C A  WEDA        EL       +      C P+ +++  +INSLC+ 
Sbjct: 520 GYNAVLKGLCRAARWEDAG-------ELISNMARKD------CPPNEITFNILINSLCQK 566

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
            LVD+A E+F  M   G  PD+  Y++LI+G+   GR+DDAR+L  ++    C PD  SY
Sbjct: 567 GLVDRAIEVFEQMPKYGSTPDIFTYNALINGFSEQGRLDDARRLLSTMS---CKPDAVSY 623

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
           N+ +    + E+ +EA  +  EM+ M   P+      A  LF
Sbjct: 624 NSALKGLCRAERWKEAEEVVAEMLRMKCPPNEVTFKYANRLF 665



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 152/335 (45%), Gaps = 50/335 (14%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           E+++  G  PD V  N L+  F +   V DA   L  +     SPDV++    ++GLC  
Sbjct: 373 EQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKLLNSM---PCSPDVISFNAALKGLCRA 429

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNV-ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYP 229
            ++ +A  L  + +  DC     P + + +  +ID LC++G VN    +F  M   G  P
Sbjct: 430 ERWDDAEELIVQMLREDC-----PLIEMTFNILIDSLCQNGRVNNAIEVFEQMPKYGCTP 484

Query: 230 DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSL 289
           D   Y+SLI       N    +G   +A+EL +            C PD+  Y +++  L
Sbjct: 485 DIVTYSSLI-------NGLSEQGLVESAIELFQSMP---------CKPDIFGYNAVLKGL 528

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
           C+    + A EL  +M  +   P+ + ++ LI+  C  G +D A ++F  +   G  PD 
Sbjct: 529 CRAARWEDAGELISNMARKDCPPNEITFNILINSLCQKGLVDRAIEVFEQMPKYGSTPDI 588

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVF 409
            +YN LIN +S+  ++++A  L   + +M  +P                      D   +
Sbjct: 589 FTYNALINGFSEQGRLDDARRL---LSTMSCKP----------------------DAVSY 623

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
           N  + GLC++ R + A E+  ++ R    PN VT+
Sbjct: 624 NSALKGLCRAERWKEAEEVVAEMLRMKCPPNEVTF 658



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 106/241 (43%), Gaps = 41/241 (17%)

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           D +S+ +++   C+D  +  A E  L         +VV Y++LI+GYC  GR+ DA  L 
Sbjct: 145 DPVSHNTLVAGYCRDGRLADA-ERLLAAAGLSGAANVVTYTTLINGYCRSGRLADALALI 203

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397
            S+      PDT +YNT++       + E+A +L  EM+     P+              
Sbjct: 204 ASMP---VAPDTYTYNTVLMGLCGARQWEDAEALMAEMVRNHCPPNE------------- 247

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                      F   +   C++  L  A +L  ++P+YG  P+VV Y+ ++ G   +G +
Sbjct: 248 ---------VTFATQIRAFCQNGLLDRAVQLLDRMPQYGCTPDVVIYSTLVNGFSEQGRV 298

Query: 458 EKAYDLLPDMEEK-----IRECLKAI----------ELLHKMAKRYVKPDEITVSILEEL 502
           + A +LL  M  K         LK +          +L+ +M ++   P+E T S+L   
Sbjct: 299 DDAIELLNGMLCKPNTICYNAALKGLCIAQRWEDVGQLIVEMVRKDCLPNEATFSMLTSC 358

Query: 503 L 503
           L
Sbjct: 359 L 359


>gi|449460167|ref|XP_004147817.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Cucumis sativus]
          Length = 942

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 123/413 (29%), Positives = 187/413 (45%), Gaps = 31/413 (7%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           ALC F+ M      P + S NSLL  L         + + E++  +G+LPD  S  I++N
Sbjct: 205 ALCVFDNMGKCGRVPSLRSCNSLLSNLVQNGEAFKALLVYEQMIALGILPDIFSYTIMVN 264

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
            +CK   V +AF  +  + R    P+VVT   LI G    G    A     K +A     
Sbjct: 265 AYCKEGRVDEAFNFVKEMERSCCEPNVVTYNSLIDGYVSLGDVCGAK----KVLALMSEK 320

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
            +  N   Y  +I G CK G + +   L   M  + ++ D  VY  LI  YC A   +DA
Sbjct: 321 GIPENSRTYTLLIKGYCKRGQMEQAEKLIGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDA 380

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
                A L++      G     VIC+       S+IN  CK   V+KA E+ + MK   +
Sbjct: 381 LRIRDAMLKV------GLKMNTVICN-------SLINGYCKLGHVNKAAEVLVSMKDWNL 427

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
            PD   Y++L+DG+C       A KL   + ++G      +YNTL+ +   +  VE AL 
Sbjct: 428 KPDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTYNTLLKNLFHVGHVEHALH 487

Query: 371 LYGEMISMGVRPD--NSCIL-----------EAAELFRTLHNTKFELDLTVFNCLVDGLC 417
           ++  M   GV P+    C L            A  +++   +  F   +T++N ++ G C
Sbjct: 488 IWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSITLYNTMICGFC 547

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           K  +L  A E+F K+   G  P+ +TY  +I G C  G + +A   L DM E+
Sbjct: 548 KMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYCKVGNLVEALK-LKDMSER 599



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 131/525 (24%), Positives = 207/525 (39%), Gaps = 97/525 (18%)

Query: 39  LHSNSVS-TVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGAL 97
           +H+  V+ TV     LLK L      G VE   AL  +N M      P   ++ +LL A 
Sbjct: 457 MHNKGVNFTVVTYNTLLKNLFH---VGHVE--HALHIWNLMHKRGVAPNEVTYCTLLDAF 511

Query: 98  AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDV 157
                +   + + +   + G        N ++  FCKM  +  A     ++    F PD 
Sbjct: 512 FKVGTFDRAMMIWKDALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPDE 571

Query: 158 VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRV 217
           +T   LI G C  G   EA     K      R  +  +   Y S+I G+ +   + K+  
Sbjct: 572 ITYRTLIDGYCKVGNLVEA----LKLKDMSERDGISSSTEMYNSLITGVFRSEELQKLNG 627

Query: 218 LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277
           L  +MK R + P+   Y SLI  +C        KG    A   + + ++          P
Sbjct: 628 LLAEMKNRELSPNVVTYGSLIAGWC-------DKGMMDKAYNAYFKMIDKG------IAP 674

Query: 278 DVLSYCSIINSLCKDVLVDKA-----------------------KELFLDMKSRGI---- 310
           +++    I++SL +   +D+A                       K     ++++ I    
Sbjct: 675 NIIIGSKIVSSLYRHGKIDEANLILHQIADIDPIAAHAHSVELPKSDLRHLETQKIVDSF 734

Query: 311 --------IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
                   I + +VY+  I G C    IDD R++   +  +G  PD  +Y +LI++ S +
Sbjct: 735 GKKAMSIPISNNIVYNIAITGLCKSKNIDDVRRILSDLLLKGFCPDNYTYCSLIHACSAV 794

Query: 363 EKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRL 422
            KV EA  L  +MI+ G+ P+                      + V+N L++GLCKS  L
Sbjct: 795 GKVNEAFCLRDDMINAGLVPN----------------------IVVYNALINGLCKSGNL 832

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLH 482
             A  LF KL R G  P VVTY  +I G C +GG                   +A+EL  
Sbjct: 833 DRARRLFNKLARKGLSPTVVTYNTLIDGYC-KGG----------------RTTEALELKD 875

Query: 483 KMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEES 527
           KM +  + P  IT S L   L  +    + + LL   +   +  S
Sbjct: 876 KMREEGICPSSITYSTLIHGLYMEGKSEQSVGLLNEMMKAGKGSS 920



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 105/452 (23%), Positives = 185/452 (40%), Gaps = 98/452 (21%)

Query: 75  FNYMIHMQPT---PFMPSFNSL------LGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
           FN++  M+ +   P + ++NSL      LG + G K  +    +SE+    G+  +  + 
Sbjct: 276 FNFVKEMERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLAL--MSEK----GIPENSRTY 329

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
            +L+  +CK   +  A   +G ++ K    D    G LI   C  G+  +A  +    + 
Sbjct: 330 TLLIKGYCKRGQMEQAEKLIGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLK 389

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC--- 242
              + N    VIC  S+I+G CK G VNK   + + MK   + PD++ YN+L+  +C   
Sbjct: 390 VGLKMNT---VIC-NSLINGYCKLGHVNKAAEVLVSMKDWNLKPDSYGYNTLLDGFCKQE 445

Query: 243 --------C------AVNWEDAKGNTSAALELHEEFVNGNGELGVICH-----PDVLSYC 283
                   C       VN+     NT      H   V     +  + H     P+ ++YC
Sbjct: 446 DFIKAFKLCDEMHNKGVNFTVVTYNTLLKNLFHVGHVEHALHIWNLMHKRGVAPNEVTYC 505

Query: 284 SIINSL-----------------------------------CKDVLVDKAKELFLDMKSR 308
           +++++                                    CK   + +A+E+FL MK  
Sbjct: 506 TLLDAFFKVGTFDRAMMIWKDALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKEL 565

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G  PD + Y +LIDGYC +G + +A KL    E +G    T  YN+LI    + E++++ 
Sbjct: 566 GFPPDEITYRTLIDGYCKVGNLVEALKLKDMSERDGISSSTEMYNSLITGVFRSEELQKL 625

Query: 369 LSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
             L  EM +  + P                      ++  +  L+ G C    +  A+  
Sbjct: 626 NGLLAEMKNRELSP----------------------NVVTYGSLIAGWCDKGMMDKAYNA 663

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
           + K+   G  PN++  + ++  L   G I++A
Sbjct: 664 YFKMIDKGIAPNIIIGSKIVSSLYRHGKIDEA 695



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 134/307 (43%), Gaps = 37/307 (12%)

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
           G    AL ++E+ +     LG++  PD+ SY  ++N+ CK+  VD+A     +M+     
Sbjct: 235 GEAFKALLVYEQMI----ALGIL--PDIFSYTIMVNAYCKEGRVDEAFNFVKEMERSCCE 288

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           P+VV Y+SLIDGY  +G +  A+K+   +  +G   ++ +Y  LI  Y K  ++E+A  L
Sbjct: 289 PNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLIKGYCKRGQMEQAEKL 348

Query: 372 YGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
            G M+   +  D                + +A  +   +     +++  + N L++G CK
Sbjct: 349 IGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCK 408

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-------- 470
              +  A E+   +  +  +P+   Y  ++ G C +    KA+ L  +M  K        
Sbjct: 409 LGHVNKAAEVLVSMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVT 468

Query: 471 ----------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
                     +     A+ + + M KR V P+E+T   L +   K       M +    L
Sbjct: 469 YNTLLKNLFHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDAL 528

Query: 521 SRNQEES 527
           S+   +S
Sbjct: 529 SKGFTKS 535



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 136/307 (44%), Gaps = 33/307 (10%)

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLF--LDMKGRGIYPDAFVYNSLIRVYC---- 242
           +P   P+V  Y  I+  L +     +VRV    L +  +  Y  + V++ L+ VY     
Sbjct: 125 QPKFRPDVSSYCKIVHILSRARMYKEVRVYLNELVVLCKNNYIASAVWDELVSVYREFSF 184

Query: 243 ------CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
                   +     KG T  AL + +      G+ G +  P + S  S++++L ++    
Sbjct: 185 SPTVFDMILKVFAEKGMTKFALCVFDNM----GKCGRV--PSLRSCNSLLSNLVQNGEAF 238

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           KA  ++  M + GI+PD+  Y+ +++ YC  GR+D+A      +E   C P+  +YN+LI
Sbjct: 239 KALLVYEQMIALGILPDIFSYTIMVNAYCKEGRVDEAFNFVKEMERSCCEPNVVTYNSLI 298

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNS--------------CILEAAELFRTLHNTKF 402
           + Y  +  V  A  +   M   G+ P+NS               + +A +L   +     
Sbjct: 299 DGYVSLGDVCGAKKVLALMSEKGI-PENSRTYTLLIKGYCKRGQMEQAEKLIGCMMEKNL 357

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
            +D  V+  L+   C + R+  A  +   + + G + N V    +I G C  G + KA +
Sbjct: 358 FVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKAAE 417

Query: 463 LLPDMEE 469
           +L  M++
Sbjct: 418 VLVSMKD 424



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 10/149 (6%)

Query: 108 CLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGL 167
           CL + +   GL+P+ V  N L+N  CK   +  A     ++ RK  SP VVT   LI G 
Sbjct: 802 CLRDDMINAGLVPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGY 861

Query: 168 CMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI 227
           C  G+ TEA  L  K         + P+ I Y+++I GL  +G   +   L  +M   G 
Sbjct: 862 CKGGRTTEALELKDKMR----EEGICPSSITYSTLIHGLYMEGKSEQSVGLLNEMMKAG- 916

Query: 228 YPDAFVYNSLI-RVYCCAVNWEDAKGNTS 255
              + V + L+ R Y   V W D +  ++
Sbjct: 917 -KGSSVMDPLVARAY---VKWRDKQSESA 941


>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59900
 gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 907

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/420 (25%), Positives = 194/420 (46%), Gaps = 32/420 (7%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G++E  +AL     ++    +P +  +N+L+ +L   + +     L +R+  IGL P+
Sbjct: 344 KRGKIE--EALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPN 401

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+ +IL++ FC+   +  A   LG ++       V     LI G C  G  + A G   
Sbjct: 402 DVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMA 461

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           + +       + P V+ Y S++ G C  G +NK   L+ +M G+GI P  + + +L+   
Sbjct: 462 EMI----NKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGL 517

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
             A       G    A++L  E    N        P+ ++Y  +I   C++  + KA E 
Sbjct: 518 FRA-------GLIRDAVKLFNEMAEWN------VKPNRVTYNVMIEGYCEEGDMSKAFEF 564

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
             +M  +GI+PD   Y  LI G CL G+  +A+     +    C  +   Y  L++ + +
Sbjct: 565 LKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCR 624

Query: 362 IEKVEEALSLYGEMISMGVRPDNSC---ILEAA----------ELFRTLHNTKFELDLTV 408
             K+EEALS+  EM+  GV  D  C   +++ +           L + +H+   + D  +
Sbjct: 625 EGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVI 684

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +  ++D   K+   + A+ ++  +   G  PN VTYT +I GLC  G + +A  L   M+
Sbjct: 685 YTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQ 744



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 106/399 (26%), Positives = 167/399 (41%), Gaps = 51/399 (12%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +  + LLP+  +L+ L++   K      A      ++     PDV     +IR LC    
Sbjct: 183 ITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKD 242

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
            + A  +     A  C  N++P    Y  +IDGLCK   V +   +  D+ G+ + PD  
Sbjct: 243 LSRAKEMIAHMEATGCDVNIVP----YNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVV 298

Query: 233 VYNSLIRVYCCAVNWE----------------------------DAKGNTSAALELHEEF 264
            Y +L+   C    +E                              +G    AL L +  
Sbjct: 299 TYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRV 358

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           V    + GV   P++  Y ++I+SLCK     +A+ LF  M   G+ P+ V YS LID +
Sbjct: 359 V----DFGV--SPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMF 412

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP-- 382
           C  G++D A      +   G       YN+LIN + K   +  A     EMI+  + P  
Sbjct: 413 CRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTV 472

Query: 383 -----------DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
                          I +A  L+  +        +  F  L+ GL ++  +R A +LF +
Sbjct: 473 VTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNE 532

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           +  +  +PN VTY VMI G C EG + KA++ L +M EK
Sbjct: 533 MAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEK 571



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 113/438 (25%), Positives = 189/438 (43%), Gaps = 78/438 (17%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++N AL  ++ M      P + +F +LL  L       + + L   +    + P+ V+ N
Sbjct: 487 KINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYN 546

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +++  +C+   +S AF  L  +  K   PD  +   LI GLC+ G+ +EA      FV  
Sbjct: 547 VMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAK----VFVDG 602

Query: 187 DCRPNVIPNVICYASIIDGLCKDG-------------------------------FVNKV 215
             + N   N ICY  ++ G C++G                                 +K 
Sbjct: 603 LHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKD 662

Query: 216 RVLFL----DMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGEL 271
           R LF     +M  RG+ PD  +Y S+I          DAK  T    +  E F   +  +
Sbjct: 663 RKLFFGLLKEMHDRGLKPDDVIYTSMI----------DAKSKTG---DFKEAFGIWDLMI 709

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
              C P+ ++Y ++IN LCK   V++A+ L   M+    +P+ V Y   +D     G +D
Sbjct: 710 NEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLD-ILTKGEVD 768

Query: 332 --DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE 389
              A +L  +I  +G + +T++YN LI  + +  ++EEA  L   MI  GV PD  CI  
Sbjct: 769 MQKAVELHNAI-LKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPD--CI-- 823

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
                              +  +++ LC+   ++ A EL+  +   G  P+ V Y  +I 
Sbjct: 824 ------------------TYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIH 865

Query: 450 GLCIEGGIEKAYDLLPDM 467
           G C+ G + KA +L  +M
Sbjct: 866 GCCVAGEMGKATELRNEM 883



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 120/268 (44%), Gaps = 17/268 (6%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+  D V   +L++   K       F  L  +  +   PD V    +I      G F EA
Sbjct: 642 GVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEA 701

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
            G++   +   C    +PN + Y ++I+GLCK GFVN+  VL   M+     P+   Y  
Sbjct: 702 FGIWDLMINEGC----VPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGC 757

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
            + +          + +   A+ELH   + G          +  +Y  +I   C+   ++
Sbjct: 758 FLDILT------KGEVDMQKAVELHNAILKG-------LLANTATYNMLIRGFCRQGRIE 804

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A EL   M   G+ PD + Y+++I+  C    +  A +L+ S+  +G  PD  +YNTLI
Sbjct: 805 EASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLI 864

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDN 384
           +      ++ +A  L  EM+  G+ P+N
Sbjct: 865 HGCCVAGEMGKATELRNEMLRQGLIPNN 892



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 31/214 (14%)

Query: 317 YSSLIDGYCLMGRIDDARKLF-VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
           +  LI  Y    R+ D   +F + I     +P+  + + L++   K      A+ L+ +M
Sbjct: 159 FDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDM 218

Query: 376 ISMGVRPD---------NSCILE----AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRL 422
           +S+G+RPD         + C L+    A E+   +  T  ++++  +N L+DGLCK  ++
Sbjct: 219 VSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKV 278

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLH 482
             A  + K L     +P+VVTY  ++ GLC                 K++E    +E++ 
Sbjct: 279 WEAVGIKKDLAGKDLKPDVVTYCTLVYGLC-----------------KVQEFEIGLEMMD 321

Query: 483 KMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           +M      P E  VS L E L K     E +NL+
Sbjct: 322 EMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLV 355


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 123/479 (25%), Positives = 201/479 (41%), Gaps = 98/479 (20%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN------------ 130
           P P +  FNSL+ +   +K Y     L  R+ T G  P +V  NI +             
Sbjct: 175 PNPSL--FNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPD 232

Query: 131 -----------------------------CFCKMIGVSDAFVALGRILRKVFSPDVVTLG 161
                                        C C +     AF  +  ++RK F PD  T  
Sbjct: 233 LLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYS 292

Query: 162 CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD 221
            +I  LC   K  +A  LF +         V P+V  Y  +ID  CK G + + + LF +
Sbjct: 293 KVITFLCHATKVEKAFLLFQEMKMV----GVTPDVYTYTILIDSFCKAGLIEQAQWLFEE 348

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAK----------------------------GN 253
           M+  G  P    Y +LI  Y  A     A                             GN
Sbjct: 349 MRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGN 408

Query: 254 TSAALELHEEFV----NGNGELGVICH------PDVLSYCSIINSLCKDVLVDKAKELFL 303
            S A E++ + +    + + +    C       P+V++Y ++++ LCK   VD A EL  
Sbjct: 409 ISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLD 468

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            M S G  P+ +VY +LIDG+C  G+ID A+++F+ +   G +P   +Y +LI+   K  
Sbjct: 469 AMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDG 528

Query: 364 KVEEALSLYGEMISMGVRP---------DNSCIL----EAAELFRTLHNTKFELDLTVFN 410
           +++ A+ +  +M+     P         D  C +    +A +L   +       ++  + 
Sbjct: 529 RLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYT 588

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
            L+DGL K+ ++  + +LF ++ R G  PN VTY V+I  LC  G ++KA  LL +M++
Sbjct: 589 ALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQ 647



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 113/453 (24%), Positives = 188/453 (41%), Gaps = 92/453 (20%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G +E   A   F  M  +  +P + ++ +L+ A    K       +  R+   G  P+
Sbjct: 335 KAGLIE--QAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPN 392

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRIL----------------RKVFSPDVVTLGCLIR 165
            V+   L++  CK   +S AF    +++                R   +P+VVT G L+ 
Sbjct: 393 DVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVD 452

Query: 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225
           GLC   K   A  L    ++  C PN I     Y ++IDG CK G ++  + +FL M   
Sbjct: 453 GLCKAHKVDHAHELLDAMLSSGCEPNHI----VYDALIDGFCKAGKIDSAQEVFLQMTKC 508

Query: 226 GIYPDAFVYNSLI-RVY-------CCAVNWEDAKGNTSAALELHEEFVNGNGELGVI--- 274
           G  P    Y SLI R++          V  +  K + +  +  +   ++G   +G     
Sbjct: 509 GYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKA 568

Query: 275 -----------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
                      C P+V++Y ++I+ L K   +D + +LF  M  +G  P+ V Y  LI+ 
Sbjct: 569 LKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINH 628

Query: 324 YCLMGRIDDAR--------------------------KLFVS-------IESEGCIPDTS 350
            C  G +D AR                          K F++       +ES G +P   
Sbjct: 629 LCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAP 688

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISM--GVRPDN-------------SCILEAAELFR 395
            Y  LI+ +SK  ++E A+ L+ EM+ +   V+ DN             S + EA  L+ 
Sbjct: 689 VYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYS 748

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
            +    F  +L+VF CL+ GL +  +   A +L
Sbjct: 749 EMTRRGFVPELSVFVCLIKGLVEVKKWDEALQL 781



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 170/412 (41%), Gaps = 52/412 (12%)

Query: 93  LLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKV 152
           ++  L    Y+   +    R+     +P+ V+   L++ F K   +      +  ++ + 
Sbjct: 113 MISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEG 172

Query: 153 FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFV 212
            +P+      L+   C +  +  A  L  +     C P  +     Y   I  +C    +
Sbjct: 173 CNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYV----VYNIFIGSICGQEKL 228

Query: 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED------AKGNTSAALELHEEFVN 266
               +L L  K   IY +    N ++      VN  +        G    A +L +E + 
Sbjct: 229 PSPDLLDLAEK---IYGEMLAANCVLN----KVNVANFARCLCGVGKFDKAFQLIKEMMR 281

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
                G +  PD  +Y  +I  LC    V+KA  LF +MK  G+ PDV  Y+ LID +C 
Sbjct: 282 K----GFV--PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCK 335

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---- 382
            G I+ A+ LF  + S GC P   +Y  LI++Y K ++V +A  ++  M+  G RP    
Sbjct: 336 AGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVT 395

Query: 383 -----DNSC----ILEAAELFRTLHNTKFELD----------------LTVFNCLVDGLC 417
                D  C    I +A E++  L  T    D                +  +  LVDGLC
Sbjct: 396 YGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLC 455

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           K+ ++  A EL   +   G EPN + Y  +I G C  G I+ A ++   M +
Sbjct: 456 KAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTK 507



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 109/440 (24%), Positives = 174/440 (39%), Gaps = 85/440 (19%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           L   G  P  V+ N L+        V   F     +    F  D  T+GC    LC +G+
Sbjct: 31  LKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGR 90

Query: 173 FTEA--------------------SGL-----FTKFVAFDCR---PNVIPNVICYASIID 204
           + +A                    SGL     F + ++F  R    + IPNV+ Y +++ 
Sbjct: 91  WADALDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLS 150

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG--NTSAALELHE 262
           G  K   +   + +   M   G  P+  ++NSL+  YC   ++  A    N         
Sbjct: 151 GFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPP 210

Query: 263 EFVNGNGELGVIC------HPDVLSYCSII--------------------NSLCKDVLVD 296
            +V  N  +G IC       PD+L     I                      LC     D
Sbjct: 211 GYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFD 270

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           KA +L  +M  +G +PD   YS +I   C   +++ A  LF  ++  G  PD  +Y  LI
Sbjct: 271 KAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILI 330

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRP-------------DNSCILEAAELFRTLHNTKFE 403
           +S+ K   +E+A  L+ EM S+G  P                 + +A ++F  + +    
Sbjct: 331 DSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCR 390

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKL----------------PRYGPEPNVVTYTVM 447
            +   +  LVDGLCK+  +  A+E++ KL                 R+   PNVVTY  +
Sbjct: 391 PNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGAL 450

Query: 448 ICGLCIEGGIEKAYDLLPDM 467
           + GLC    ++ A++LL  M
Sbjct: 451 VDGLCKAHKVDHAHELLDAM 470



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 125/287 (43%), Gaps = 31/287 (10%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           ++   G LP   +   L++   K   +  A   L ++L+   +P+VVT   +I GLC  G
Sbjct: 504 QMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIG 563

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
           +  +A  L +      C PNV+     Y ++IDGL K G ++    LF  M  +G  P+ 
Sbjct: 564 ESEKALKLLSLMEEKGCSPNVVT----YTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNY 619

Query: 232 FVYNSLIRVYCCAVNWEDAK----------------GNTSAALELHEEFVNGNGEL---- 271
             Y  LI   C A   + A+                G   A     + F+   G L    
Sbjct: 620 VTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEME 679

Query: 272 --GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS--RGIIPDVVVYSSLIDGYCLM 327
             G +  P    Y  +I+   K   ++ A EL  +M      +  D  +Y+SLI   CL 
Sbjct: 680 SYGTV--PIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLA 737

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL-YG 373
            ++++A +L+  +   G +P+ S +  LI    +++K +EAL L YG
Sbjct: 738 SQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYG 784



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 108/258 (41%), Gaps = 48/258 (18%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ V+   +++  C++     A   L  +  K  SP+VVT   LI GL   GK   +  L
Sbjct: 547 PNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDL 606

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK---------------- 223
           FT+     C PN +     Y  +I+ LC  G ++K R+L  +MK                
Sbjct: 607 FTQMSRKGCSPNYVT----YRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQ 662

Query: 224 -----------------GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266
                              G  P A VY  LI  +  A       G    A+ELH+E + 
Sbjct: 663 GFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKA-------GRLEIAMELHKEMM- 714

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
              E+      D   Y S+I +LC    V++A  L+ +M  RG +P++ V+  LI G   
Sbjct: 715 ---EVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVE 771

Query: 327 MGRIDDARKLFVSIESEG 344
           + + D+A +L   I  EG
Sbjct: 772 VKKWDEALQLCYGICHEG 789



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/389 (20%), Positives = 147/389 (37%), Gaps = 92/389 (23%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P+ + Y +++  L   G V+    +  +M   G   D F         C    W DA   
Sbjct: 38  PSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADA--- 94

Query: 254 TSAALEL--HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
               L++   E+F             D +    +I+ L +    D+A      M+    I
Sbjct: 95  ----LDMIEREDF-----------KLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCI 139

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           P+VV Y +L+ G+    ++   +++   + +EGC P+ S +N+L++SY   +    A  L
Sbjct: 140 PNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKL 199

Query: 372 YGEMISMGVRPD-----------------------------------NSCIL-------- 388
              M + G  P                                     +C+L        
Sbjct: 200 LNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANF 259

Query: 389 -----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
                      +A +L + +    F  D + ++ ++  LC + ++  A+ LF+++   G 
Sbjct: 260 ARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGV 319

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIE 479
            P+V TYT++I   C  G IE+A  L  +M                    K ++  +A +
Sbjct: 320 TPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQAND 379

Query: 480 LLHKMAKRYVKPDEITVSILEELLNKDEN 508
           + H+M     +P+++T   L + L K  N
Sbjct: 380 IFHRMVDAGCRPNDVTYGALVDGLCKAGN 408


>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Vitis vinifera]
          Length = 708

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/428 (26%), Positives = 189/428 (44%), Gaps = 46/428 (10%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ PD VS  +++   C M  V +A   L  ++ + F  D  T   +I   C +G     
Sbjct: 219 GVSPDCVSFKLMVVACCNMGRVLEAERWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRV 278

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
            G F K V       + PNVI + ++I+GLCK G + +   L  +M  RG  P+ + + +
Sbjct: 279 VGYFWKMVEM----GLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTT 334

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI   C        KG T  A  L  + V  +G       P+V +Y ++IN  CK+  ++
Sbjct: 335 LIDGLC-------KKGWTEKAFRLFLKLVRSDGY-----KPNVHTYTAMINGYCKEDKLN 382

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A+ L   M+ +G++P+   Y++LIDG+C +G    A +L   +  EG  P+  +YN +I
Sbjct: 383 RAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAII 442

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD--NSCILEAAE-----------LFRTLHNTKFE 403
           +   K   ++EA  L  ++   G++ D     IL +              F  +    F 
Sbjct: 443 DGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFT 502

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D+  +  L+   C+  +++ +  LF++    G  P   TYT MICG C  G        
Sbjct: 503 PDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTS----- 557

Query: 464 LPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
                        A++L  +M+     PD IT   L   L K+    +  NL  + + + 
Sbjct: 558 ------------LAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKG 605

Query: 524 QEESKLTR 531
               ++TR
Sbjct: 606 LSPCEVTR 613



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 190/406 (46%), Gaps = 40/406 (9%)

Query: 93  LLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKV 152
           ++ A   K Y    +    ++  +GL P+ ++   L+N  CK   +  AF  L  ++R+ 
Sbjct: 265 IIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRG 324

Query: 153 FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFV 212
           + P+V T   LI GLC +G   +A  LF K V  D      PNV  Y ++I+G CK+  +
Sbjct: 325 WKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSD---GYKPNVHTYTAMINGYCKEDKL 381

Query: 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
           N+  +L   M+ +G+ P+   Y +LI  +C         GN   A EL +      G+ G
Sbjct: 382 NRAEMLLSRMQEQGLVPNTNTYTTLIDGHC-------KVGNFVRAYELMDLM----GKEG 430

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
               P++ +Y +II+ LCK   +D+A  L   +   G+  D V Y+ L+  +C     + 
Sbjct: 431 F--SPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNR 488

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392
           +   F  +   G  PD  SY TLI+++ + ++++E+  L+ E +S+G+ P          
Sbjct: 489 SLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKK------- 541

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
                           +  ++ G C+      A +LF+++  +G  P+ +TY  +I GLC
Sbjct: 542 ---------------TYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLC 586

Query: 453 IEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSI 498
            E  ++ A +L   M +K     +   L   +A  Y K D+ + +I
Sbjct: 587 KESKLDDARNLYDAMMDKGLSPCEVTRL--TLAYEYCKKDDSSTAI 630



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 118/255 (46%), Gaps = 32/255 (12%)

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353
           LV+ A+ +F++M  RG+ PD V +  ++   C MGR+ +A +   ++   G I D ++  
Sbjct: 204 LVEIAENMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAERWLNAMVERGFIVDNATCT 263

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNT 400
            +I+++ +   V   +  + +M+ MG+ P+                I +A EL   +   
Sbjct: 264 LIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRR 323

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY-GPEPNVVTYTVMICGLCIEGGIEK 459
            ++ ++     L+DGLCK      A+ LF KL R  G +PNV TYT MI G C E  + +
Sbjct: 324 GWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNR 383

Query: 460 AYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEE 501
           A  LL  M+E                  K+   ++A EL+  M K    P+  T + + +
Sbjct: 384 AEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIID 443

Query: 502 LLNKDENCHECMNLL 516
            L K  +  E   LL
Sbjct: 444 GLCKKGSLDEAYRLL 458



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 108/248 (43%), Gaps = 20/248 (8%)

Query: 81  MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIG---LLPDFVSLNILMNCFCKMIG 137
           MQ    +P+ N+    + G     NF+   E ++ +G     P+  + N +++  CK   
Sbjct: 391 MQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGS 450

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           + +A+  L ++       D VT   L+   C Q     +   F K +    +    P++ 
Sbjct: 451 LDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKML----KVGFTPDIH 506

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            Y ++I   C+   + +   LF +    G+ P    Y S+I  YC         GNTS A
Sbjct: 507 SYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYC-------RYGNTSLA 559

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
           ++L +   N        C PD ++Y ++I+ LCK+  +D A+ L+  M  +G+ P  V  
Sbjct: 560 VKLFQRMSNHG------CAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVTR 613

Query: 318 SSLIDGYC 325
            +L   YC
Sbjct: 614 LTLAYEYC 621



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 77/156 (49%), Gaps = 13/156 (8%)

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---- 383
           G++ +A  + V ++++G +P T + N +++    +  VE A +++ EM   GV PD    
Sbjct: 168 GKLKEAVNMVVEMQNQGLVPSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVSF 227

Query: 384 ----NSC-----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
                +C     +LEA      +    F +D      ++D  C+   +      F K+  
Sbjct: 228 KLMVVACCNMGRVLEAERWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVE 287

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            G  PNV+ +T +I GLC +G I++A++LL +M  +
Sbjct: 288 MGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRR 323



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 56/116 (48%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           + + N +L FFN M+ +  TP + S+ +L+     +K       L E   ++GL+P   +
Sbjct: 483 QADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKKT 542

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
              ++  +C+    S A     R+     +PD +T G LI GLC + K  +A  L+
Sbjct: 543 YTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLY 598


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/399 (26%), Positives = 189/399 (47%), Gaps = 61/399 (15%)

Query: 75  FNYMIHMQPTPFMP---SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131
           ++ +  M    F+P   +++ ++G L       N   L E + +  ++PD  +  IL++ 
Sbjct: 465 YSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDS 524

Query: 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
           FCK+  +  A      ++R   +P+VVT   LI       K + A+ LF   ++  C   
Sbjct: 525 FCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGC--- 581

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
            IPNV+ Y ++IDG CK G + K   ++  M+G    PD                     
Sbjct: 582 -IPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPD--------------------- 619

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
                 ++++ +  +GN     I  P++ +Y ++++ LCK   V +A++L   M   G  
Sbjct: 620 ------VDMYFKIDDGN-----IRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCE 668

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           P+ +VY +LIDG+C +G++D+A+ +F  +   G  P+  +Y++LI+   K ++++ AL +
Sbjct: 669 PNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKV 728

Query: 372 YGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
              M+      +NSC                  ++ ++  ++DGLCK  +   A+ L   
Sbjct: 729 LSRML------ENSC----------------APNVIIYTEMIDGLCKVGKTDEAYRLMSM 766

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           +   G  PNVVTYT MI G    G ++K  +L+  M  K
Sbjct: 767 MEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAK 805



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 129/475 (27%), Positives = 202/475 (42%), Gaps = 70/475 (14%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC---- 133
           MI     P    FNSL+ A      Y     L +++   G  P +V  NIL+   C    
Sbjct: 360 MITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEK 419

Query: 134 --KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
              +  +  A  A G +L      + V +  L R LC  GKF +A  +  + ++      
Sbjct: 420 LPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMS----KG 475

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
            IP+   Y+ +I  LC    V+   +LF +MK   + PD F Y  LI  +C         
Sbjct: 476 FIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFC-------KV 528

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
           G    A +  +E V         C P+V++Y ++I++  K   +  A ELF  M S G I
Sbjct: 529 GLLQQARKWFDEMVRDG------CAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCI 582

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS----------------SYNTL 355
           P+VV Y++LIDG+C  G+I+ A +++  +     IPD                  +Y  L
Sbjct: 583 PNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGAL 642

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRP---------DNSCIL----EAAELFRTLHNTKF 402
           ++   K  KV+EA  L   M   G  P         D  C +    EA  +F  +    +
Sbjct: 643 VDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGY 702

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
             ++  ++ L+D L K  RL  A ++  ++      PNV+ YT MI GLC  G  ++AY 
Sbjct: 703 GPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYR 762

Query: 463 LLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           L+  MEE                  K  +  K +EL+ +M  +   P+ +T  +L
Sbjct: 763 LMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVL 817



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/415 (26%), Positives = 187/415 (45%), Gaps = 42/415 (10%)

Query: 115 TIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFT 174
           T G  P     N L++ +C+    S A+  L ++      P  V    LI G+C   K  
Sbjct: 362 TEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLP 421

Query: 175 EASGLFTKFVAFD--CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
               L     A+      +V+ N +  +++   LC  G   K   +  +M  +G  PD  
Sbjct: 422 SLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTS 481

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            Y+ +I + C A   ++       A  L EE  + +    V+  PDV +Y  +I+S CK 
Sbjct: 482 TYSKVIGLLCNASKVDN-------AFLLFEEMKSNH----VV--PDVFTYTILIDSFCKV 528

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
            L+ +A++ F +M   G  P+VV Y++LI  Y    ++  A +LF  + SEGCIP+  +Y
Sbjct: 529 GLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTY 588

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCL 412
             LI+ + K  ++E+A  +Y  M        N+ I +    F+       + ++  +  L
Sbjct: 589 TALIDGHCKSGQIEKACQIYARM------RGNADIPDVDMYFKIDDGNIRDPNIFTYGAL 642

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIR 472
           VDGLCK+ +++ A +L   +   G EPN + Y  +I G C  G +++A  +         
Sbjct: 643 VDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFT------- 695

Query: 473 ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEES 527
                     KM++R   P+  T S L + L KD+     ++L    LSR  E S
Sbjct: 696 ----------KMSERGYGPNVYTYSSLIDRLFKDKR----LDLALKVLSRMLENS 736



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/426 (24%), Positives = 173/426 (40%), Gaps = 104/426 (24%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           RL  +G  P  ++ N L+  F +   +  A++    +    F+ D  TLGC +  LC  G
Sbjct: 222 RLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAG 281

Query: 172 KFTEASGL------------FTKFVAFDCRPNV----------------IPNVICYASII 203
           ++ EA  L            +T+ ++  C  ++                IPNV+ Y  ++
Sbjct: 282 RWREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILL 341

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
            G  +   + + + +   M   G YP   ++NSLI  YC         G+ S A +L ++
Sbjct: 342 CGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYC-------RSGDYSYAYKLLKK 394

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCK-------DVL---------------------- 294
                G+ G  C P  + Y  +I  +C        DVL                      
Sbjct: 395 M----GDCG--CQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNV 448

Query: 295 ------------VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
                        +KA  +  +M S+G IPD   YS +I   C   ++D+A  LF  ++S
Sbjct: 449 SNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKS 508

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF 402
              +PD  +Y  LI+S+ K+  +++A   + EM+  G  P                    
Sbjct: 509 NHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAP-------------------- 548

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
             ++  +  L+    K+ ++ SA ELF+ +   G  PNVVTYT +I G C  G IEKA  
Sbjct: 549 --NVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQ 606

Query: 463 LLPDME 468
           +   M 
Sbjct: 607 IYARMR 612



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 132/304 (43%), Gaps = 52/304 (17%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  P+ +  + L++ FCK+  + +A +   ++  + + P+V T   LI  L    +   A
Sbjct: 666 GCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLA 725

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             + ++ +   C     PNVI Y  +IDGLCK G  ++   L   M+ +G +P+   Y +
Sbjct: 726 LKVLSRMLENSC----APNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTA 781

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           +I  +  A       G     LEL  +     G  G  C P+ ++Y  +IN  C   L+D
Sbjct: 782 MIDGFGKA-------GKVDKCLELMRQM----GAKG--CAPNFVTYRVLINHCCAAGLLD 828

Query: 297 KAKELFLDMK------------------------SRGI---------IPDVVVYSSLIDG 323
            A +L  +MK                        S G+         +P +  Y  LID 
Sbjct: 829 DAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVPIIPAYRILIDS 888

Query: 324 YCLMGRIDDARKLFVSIES--EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
           +C  GR++ A +L   + S       D   Y++LI S S   KV++A  LY +MI  G  
Sbjct: 889 FCKAGRLELALELHKXMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGI 948

Query: 382 PDNS 385
           P+ S
Sbjct: 949 PELS 952



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 148/382 (38%), Gaps = 72/382 (18%)

Query: 147 RILRKVFSPDVVTLG----CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202
           + LR++   D   LG     LIR  C  G +  A     +      +P+ +     Y ++
Sbjct: 183 QFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLT----YNAL 238

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
           +    +   ++   ++  +M   G   D +     + + C A  W +A      AL   E
Sbjct: 239 VRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREA-----LALIEKE 293

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
           EF             D + Y  +I+ LC+  L ++A +    M+S   IP+VV Y  L+ 
Sbjct: 294 EF-----------KLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLC 342

Query: 323 GYCLMGR-IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
           G CL  R +   +++   + +EGC P    +N+LI++Y +      A  L  +M   G +
Sbjct: 343 G-CLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQ 401

Query: 382 PDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS--AWELFKKLPRYGPEP 439
           P                         V+N L+ G+C + +L S    EL +K      + 
Sbjct: 402 P----------------------GYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDA 439

Query: 440 NVVTYTVMICG----LCIEGGIEKAYDLLPDMEEK------------------IRECLKA 477
           +VV   V +      LC  G  EKAY ++ +M  K                    +   A
Sbjct: 440 HVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNA 499

Query: 478 IELLHKMAKRYVKPDEITVSIL 499
             L  +M   +V PD  T +IL
Sbjct: 500 FLLFEEMKSNHVVPDVFTYTIL 521



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 121/306 (39%), Gaps = 31/306 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L++A   F  M      P + +++SL+  L   K     + +  R+      P+ +   
Sbjct: 686 KLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYT 745

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            +++  CK+    +A+  +  +  K   P+VVT   +I G    GK  +   L  +  A 
Sbjct: 746 EMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAK 805

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C PN +     Y  +I+  C  G ++    L  +MK                       
Sbjct: 806 GCAPNFVT----YRVLINHCCAAGLLDDAHQLLDEMK--------------------QTY 841

Query: 247 WEDAKGNTSAALE-LHEEFVNGNGELGVICH----PDVLSYCSIINSLCKDVLVDKAKEL 301
           W          +E  + EF+   G L  I      P + +Y  +I+S CK   ++ A EL
Sbjct: 842 WPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALEL 901

Query: 302 FLDMKS--RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
              M S       D  +YSSLI+   L  ++D A +L+  +   G IP+ S +  L+   
Sbjct: 902 HKXMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGL 961

Query: 360 SKIEKV 365
            +I + 
Sbjct: 962 IRINRT 967


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 121/443 (27%), Positives = 194/443 (43%), Gaps = 48/443 (10%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N L+  L  +K Y     + E +   G+ P+  S NIL+  F +     DA      +
Sbjct: 121 TYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIM 180

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
            RK   PD+ T   L+  LC  G   +A  +F + +A    P   P+   + +++  L K
Sbjct: 181 KRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVP---PDRALHTAMVRTLLK 237

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
              V + R +F  M+  G  PDA  YN++I     A       G+   AL++ +      
Sbjct: 238 AKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKA-------GHAQEALKVLDNM---- 286

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
             L   C P  ++Y  ++NSLCK   +++A+ELF  M + G  P+ V+Y+SLI G+   G
Sbjct: 287 --LAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSG 344

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---- 384
           R+ +A  LF  +   G  PD  ++  +I+   K    E+A   + EM+  G +P+     
Sbjct: 345 RMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYT 404

Query: 385 ------SCILEAAELFRTLHNTKFEL---DLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
                 S I   A  FR +          D   + CL+DG CK  RL  A +L  +L + 
Sbjct: 405 TIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKC 464

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL-------------------K 476
              PN+  Y+ ++ GLC  G +E   D L +  +   E L                   +
Sbjct: 465 SSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDE 524

Query: 477 AIELLHKMAKRYVKPDEITVSIL 499
           A  +  +M     KPD  T +IL
Sbjct: 525 ACRIFQRMVSEGCKPDATTYNIL 547



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 123/422 (29%), Positives = 197/422 (46%), Gaps = 34/422 (8%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           KSG  E   A   F  M+     P + ++ +++  L+      N   + + +   G  PD
Sbjct: 377 KSGNFE--QAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPD 434

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA-SGLF 180
            V+   L++ FCK+  + +A   L  + +   SP++     L++GLC  G        LF
Sbjct: 435 SVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLF 494

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            +  A     N+ P + C  SII GLCK G +++   +F  M   G  PDA  YN LI  
Sbjct: 495 EQSKA--AAENLDPGLCC--SIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILING 550

Query: 241 YCCAVNWEDAKGNTSAALELHE-EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            C      + +   + AL LH+ E V   G L     PD ++Y  +   LCK   VD+A 
Sbjct: 551 LC---RSRENRVERAFAL-LHDLEMV---GYL-----PDAVTYTPLCIGLCKIGEVDRAV 598

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           ++  +  SRG   DVV Y++L  G C  G++D A  LF  +  +G  PD ++Y  +IN  
Sbjct: 599 KMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGL 658

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNS-------CILEAAELFRTLHN-----TKFEL--D 405
            K +K+E+A   + EMI  G +P  +        +  A  +    H       + EL   
Sbjct: 659 IKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGS 718

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
           + +++ L+ G CK+ ++ +A +LF+ +   G  P  VT   +  GL   G  EKA +LL 
Sbjct: 719 VMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQ 778

Query: 466 DM 467
           +M
Sbjct: 779 EM 780



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 164/375 (43%), Gaps = 33/375 (8%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           ++   G  PD ++ N +++   K     +A   L  +L K   P  VT G L+  LC  G
Sbjct: 250 QMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAG 309

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
               A  LF    A   RPN +     Y S+I G  K G + +   LF +M   G  PD 
Sbjct: 310 TLERAEELFRVMAASGFRPNSV----IYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDV 365

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
             +  +I   C + N+E A  +        EE + G       C P+V++Y +II  L K
Sbjct: 366 ITHTVMIDGLCKSGNFEQAAKS-------FEEMMRGG------CKPNVVTYTTIIQGLSK 412

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
              V  A  +   M + G  PD V Y  L+DG+C +GR+D+A +L   ++     P+   
Sbjct: 413 IGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQL 472

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVR---PDNSCIL-----------EAAELFRTL 397
           Y++L+        VE  L    E          P   C +           EA  +F+ +
Sbjct: 473 YSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRM 532

Query: 398 HNTKFELDLTVFNCLVDGLCKSW--RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            +   + D T +N L++GLC+S   R+  A+ L   L   G  P+ VTYT +  GLC  G
Sbjct: 533 VSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIG 592

Query: 456 GIEKAYDLLPDMEEK 470
            +++A  +L +   +
Sbjct: 593 EVDRAVKMLEEASSR 607



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 136/310 (43%), Gaps = 18/310 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIGLLPDFVS 124
            L++A   F  M+     P   ++N L+  L  + +        L   L  +G LPD V+
Sbjct: 521 RLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVT 580

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
              L    CK+  V  A   L     + ++ DVV    L  GLC QG+   A  LF + V
Sbjct: 581 YTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMV 640

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
               R    P+   Y  II+GL K   +      F +M G+G  P    Y +L++  C A
Sbjct: 641 ----RQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHA 696

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                  GN   A    E  +   GEL       V+ Y ++I+  CK + VD A +LF D
Sbjct: 697 -------GNVDEAFHRFEGML-ARGEL----VGSVMIYDALIHGFCKALKVDAALKLFED 744

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M SRG +P  V  +SL DG    G+ + A++L   + + G  P  +++  +++   K ++
Sbjct: 745 MISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDE 804

Query: 365 VEEALSLYGE 374
             + L L  E
Sbjct: 805 SGKLLKLVQE 814



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 127/275 (46%), Gaps = 20/275 (7%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMI--GVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           +R+ + G  PD  + NIL+N  C+     V  AF  L  +    + PD VT   L  GLC
Sbjct: 530 QRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLC 589

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
             G+   A     K +          +V+ Y ++  GLC  G V++   LF +M  +G  
Sbjct: 590 KIGEVDRA----VKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGA 645

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           PDA         YCC +N          A +  +E + G G+      P V +Y +++ +
Sbjct: 646 PDA-------AAYCCIINGLIKGKKLEDACKFFDEMI-GKGQ-----KPTVATYTALVQA 692

Query: 289 LCKDVLVDKAKELFLDMKSRG-IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
           LC    VD+A   F  M +RG ++  V++Y +LI G+C   ++D A KLF  + S G +P
Sbjct: 693 LCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVP 752

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
              +  +L +   +  K E+A  L  EM + G  P
Sbjct: 753 TAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPP 787



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 117/277 (42%), Gaps = 33/277 (11%)

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
           F    GE     H DV +Y  ++N L  +    +   +  +M   GI P+   ++ LI  
Sbjct: 105 FFRWAGEQAGFQH-DVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRS 163

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG-VRP 382
           +    R DDA   F  ++ + C PD  ++  L++   K    E+A  ++ EM++MG V P
Sbjct: 164 FARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPP 223

Query: 383 DNSC-------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
           D +              + EA E+F  +    F  D   +N ++DGL K+   + A ++ 
Sbjct: 224 DRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVL 283

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME------------------EKI 471
             +      P  VTY +++  LC  G +E+A +L   M                    K 
Sbjct: 284 DNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKS 343

Query: 472 RECLKAIELLHKMAKRYVKPDEITVSILEELLNKDEN 508
               +A  L  +M +   +PD IT +++ + L K  N
Sbjct: 344 GRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGN 380


>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
          Length = 703

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 206/469 (43%), Gaps = 61/469 (13%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +++A+  F  M      P M  + +L+  L         + +  R+  +G  P   +   
Sbjct: 97  IDEAVELFGEM----DQPDMHMYAALVKGLCKAGRGEEGLLMLRRMKELGWRPSTRAYAA 152

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           +++  C      +A   L  +  K  +P VVT   +I   C +G+ ++A  +        
Sbjct: 153 VVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRG 212

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C+PNV      Y +++ G C +G V+K   L   M+  G+ PDA  YN LIR  C     
Sbjct: 213 CKPNVWT----YNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCI---- 264

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               G+  +A  L    + G+G +      D  +Y ++IN+LCKD   D+A  LF  +++
Sbjct: 265 ---DGHIESAFRLLR-LMEGDGLIA-----DQYTYNALINALCKDGRTDQACSLFDSLET 315

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           RGI P+ V ++SLI+G C  G++D A K    + S GC PDT +Y++ I    K++  +E
Sbjct: 316 RGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQE 375

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
            LS  GEM+   V+P  S +     + + L    + L           + ++W       
Sbjct: 376 GLSFIGEMLQKDVKP--STVNYTIVIHKLLKERNYGL-----------VARTW------- 415

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK------------------AYDLLPDMEE 469
              ++   G  P+VVTYT  +   CIEG + +                  AY+ L D   
Sbjct: 416 --GEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHA 473

Query: 470 KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPS 518
            I +   A+ +L +M      P++ T  IL   L +     + + L P+
Sbjct: 474 SIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPA 522



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 109/420 (25%), Positives = 180/420 (42%), Gaps = 81/420 (19%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  PD  + N L+  +C+   V  A     ++  + F+ DVV+   LI G C  G+  EA
Sbjct: 41  GWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYAALIEGFCETGRIDEA 100

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             LF +           P++  YA+++ GLCK G   +  ++   MK  G  P    Y +
Sbjct: 101 VELFGEMDQ--------PDMHMYAALVKGLCKAGRGEEGLLMLRRMKELGWRPSTRAYAA 152

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNG---------------------NGELGVI- 274
           ++   C    WE  +    A   L E F  G                     +  L V+ 
Sbjct: 153 VVDFRC----WE--RKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLE 206

Query: 275 ------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                 C P+V +Y +++   C +  V KA  L   M+  G+ PD V Y+ LI G C+ G
Sbjct: 207 LMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCIDG 266

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL 388
            I+ A +L   +E +G I D  +YN LIN+  K  + ++A SL+  + + G++P+     
Sbjct: 267 HIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNA---- 322

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
                               FN L++GLCKS ++  AW+  +K+   G  P+  TY+  I
Sbjct: 323 ------------------VTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFI 364

Query: 449 CGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDEN 508
             LC                 K++   + +  + +M ++ VKP  +  +I+   L K+ N
Sbjct: 365 EHLC-----------------KMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERN 407



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 183/411 (44%), Gaps = 24/411 (5%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N+   E  ++DAL     M      P + ++N+L+     +      + L  ++   G+ 
Sbjct: 190 NAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVN 249

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V+ N+L+   C    +  AF  L  +       D  T   LI  LC  G+  +A  L
Sbjct: 250 PDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSL 309

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F    + + R  + PN + + S+I+GLCK G V+        M   G  PD + Y+S I 
Sbjct: 310 FD---SLETR-GIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIE 365

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGE-LGVICHPDVLSYCSIINSLCKDVLVDKA 298
             C        KG+        +E ++  GE L     P  ++Y  +I+ L K+      
Sbjct: 366 HLC------KMKGS--------QEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLV 411

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
              + +M S G  PDVV Y++ +  YC+ GR+++A  + + +   G   DT +YNTL++ 
Sbjct: 412 ARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDG 471

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
           ++ I + + A+S+  +M S+   P+         L R  H  +  L   V      G+ K
Sbjct: 472 HASIGQTDHAVSILKQMTSVASVPNQFTYF---ILLR--HLVRMRLVEDVLPLTPAGVWK 526

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           +  L   + LF  + +    PN  TY+ ++ G   +G  E+A  L+  M+E
Sbjct: 527 AIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKE 577



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 107/248 (43%), Gaps = 31/248 (12%)

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
           +Y ++I SLC+   +  A      M   G  PD   ++SLI GYC   ++D AR LF  +
Sbjct: 13  TYNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKM 72

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL---------EAA 391
              G   D  SY  LI  + +  +++EA+ L+GEM    +    + +          E  
Sbjct: 73  PLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQPDMHMYAALVKGLCKAGRGEEGL 132

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
            + R +    +      +  +VD  C   + + A E+ +++   G  P VVT T +I   
Sbjct: 133 LMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAY 192

Query: 452 CIEGGIEKAYDLLPDMEEKIREC--------------------LKAIELLHKMAKRYVKP 491
           C EG +  A  +L  M  K+R C                     KA+ LL+KM    V P
Sbjct: 193 CKEGRMSDALRVLELM--KLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNP 250

Query: 492 DEITVSIL 499
           D +T ++L
Sbjct: 251 DAVTYNLL 258



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 38/272 (13%)

Query: 108 CLSERLNTI----------GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFS-PD 156
           C+  RLN            G+  D ++ N LM+     IG +D  V++ + +  V S P+
Sbjct: 438 CIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHAS-IGQTDHAVSILKQMTSVASVPN 496

Query: 157 VVTLGCLIRGLCMQ-----------GKFTEASGLFTKFVAFDC--RPNVIPNVICYASII 203
             T   L+R L                  +A  L   F  FD   +   +PN   Y+SI+
Sbjct: 497 QFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSIL 556

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
           +G  +DG   +   L   MK   I  +  +Y +L+  +C +  + DA     + ++    
Sbjct: 557 EGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQ--HG 614

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
           F+           P ++SY  +++ L  +   DKAKE+F++ + +   PD +V+  +IDG
Sbjct: 615 FI-----------PHLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDG 663

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
               G  D +R++ + +E   C P   +Y  L
Sbjct: 664 LIKKGHSDISREMIIMLERMNCRPSHQTYAML 695



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 73/342 (21%), Positives = 131/342 (38%), Gaps = 51/342 (14%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGAL---AGKKYYVNFICLSERLNTIGL 118
           KSG+V++  A  F   M+    TP   +++S +  L    G +  ++FI   E L    +
Sbjct: 334 KSGKVDI--AWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFI--GEMLQK-DV 388

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
            P  V+  I+++   K           G ++    +PDVVT    +R  C++G+  EA  
Sbjct: 389 KPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAEN 448

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           +  +      +  V  + + Y +++DG    G  +    +   M      P+ F Y  L+
Sbjct: 449 VLMEM----SKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILL 504

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH----PDVLSYCSIINSLCKDVL 294
           R        ED    T A +    E  +  G   V+      P+  +Y SI+    +D  
Sbjct: 505 RHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGR 564

Query: 295 VDKAKEL----------------------------FLD-------MKSRGIIPDVVVYSS 319
            ++A  L                            +LD       M   G IP ++ Y  
Sbjct: 565 TEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQH 624

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           L+ G    G+ D A+++F++   +   PD   +  +I+   K
Sbjct: 625 LLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIK 666


>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 129/449 (28%), Positives = 198/449 (44%), Gaps = 68/449 (15%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVN-FICLSERLNTIGLLPDFVSLNIL 128
            AL +FN MI     P   +FN+LL  L    ++   +   +E    + L  D  S  I+
Sbjct: 113 QALFYFNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFNETKGNVKL--DVYSFGIM 170

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           +   C++  +   F  LG++     SP+VV    LI G C  G       LF K    D 
Sbjct: 171 IKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELD- 229

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
              V+ N   Y  +I+G  K G       L+  MK  GI P+ + YNS+I   CC     
Sbjct: 230 ---VVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMI-CRCC----N 281

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
           D K N   A EL +E      E GV C  +V++Y ++I  LC++  V +A+ L   MK  
Sbjct: 282 DGKLNN--AFELFDEM----RERGVAC--NVVTYNTLIGGLCQERRVLEAERLMCRMKRD 333

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS-------- 360
           G+ P+++ Y++LIDGYC +G +D A  LF  ++S G  P  ++YN LI  +S        
Sbjct: 334 GLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGV 393

Query: 361 ---------------------------KIEKVEEALSLYGEMISMGVRPD---------N 384
                                      + + +E+A  +Y  M   G+  D          
Sbjct: 394 TDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHG 453

Query: 385 SCIL----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
            C++    EA++LF++L     + +  ++N ++ G CK      A  L K++   G  PN
Sbjct: 454 LCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPN 513

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           V +Y   I  LC +    +A  LL DM E
Sbjct: 514 VASYNSTIQILCKDEKWTEAEVLLKDMIE 542



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 111/438 (25%), Positives = 198/438 (45%), Gaps = 55/438 (12%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKV---FSPDVVTLGCLIRGLCMQGKF 173
           GL+P   + N L+    K    S+ F    R+  +       DV + G +I+G C  G  
Sbjct: 125 GLVPGSNTFNNLLILLIK----SNFFEKAWRVFNETKGNVKLDVYSFGIMIKGCCEVGYL 180

Query: 174 TEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233
            +   +  +         + PNV+ Y ++IDG CK+G + + + LF  M    +  + + 
Sbjct: 181 DKGFEVLGQMEEM----GLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYT 236

Query: 234 YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDV 293
           Y  LI  +          G     +EL+E+        G++  P+V +Y S+I   C D 
Sbjct: 237 YTVLINGFF-------KMGLKKDGIELYEKM----KLTGIV--PNVYTYNSMICRCCNDG 283

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353
            ++ A ELF +M+ RG+  +VV Y++LI G C   R+ +A +L   ++ +G  P+  SYN
Sbjct: 284 KLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYN 343

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPDNSC--ILEAA-----------ELFRTLHNT 400
           TLI+ Y  I  +++A SL+ +M S G  P  +   IL A            ++ R +   
Sbjct: 344 TLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEAR 403

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
                   +  L+D L +S  +  A++++  + + G   ++  Y V+I GLC+ G +++A
Sbjct: 404 GLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEA 463

Query: 461 YDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEEL 502
             L   ++E                  K     +A+ LL +M +  + P+  + +   ++
Sbjct: 464 SKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQI 523

Query: 503 LNKDENCHECMNLLPSFL 520
           L KDE   E   LL   +
Sbjct: 524 LCKDEKWTEAEVLLKDMI 541



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 161/355 (45%), Gaps = 45/355 (12%)

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           +V+ + +II+   +     +    F  M GRG+ P +  +N+L+ +   +  +E      
Sbjct: 94  HVLIHEAIINAHVRSQLPEQALFYFNQMIGRGLVPGSNTFNNLLILLIKSNFFEK----- 148

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
             A  +  E   GN +L      DV S+  +I   C+   +DK  E+   M+  G+ P+V
Sbjct: 149 --AWRVFNE-TKGNVKL------DVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNV 199

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           VVY++LIDG C  G I+  ++LF  +     + +  +Y  LIN + K+   ++ + LY +
Sbjct: 200 VVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEK 259

Query: 375 MISMGVRPD----NSCILE---------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
           M   G+ P+    NS I           A ELF  +       ++  +N L+ GLC+  R
Sbjct: 260 MKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERR 319

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME------------- 468
           +  A  L  ++ R G  PN+++Y  +I G C  G ++KA  L   M+             
Sbjct: 320 VLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNI 379

Query: 469 -----EKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPS 518
                 + +      +++ +M  R + P ++T +IL + L + +N  +   +  S
Sbjct: 380 LIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSS 434



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 137/304 (45%), Gaps = 38/304 (12%)

Query: 107 ICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166
           I L E++   G++P+  + N ++   C    +++AF     +  +  + +VVT   LI G
Sbjct: 254 IELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGG 313

Query: 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
           LC + +  EA  L  +      R  + PN+I Y ++IDG C  G ++K   LF  MK  G
Sbjct: 314 LCQERRVLEAERLMCRMK----RDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSG 369

Query: 227 IYPDAFVYNSLIRVYCCAVNWE---------DAKG-------------------NTSAAL 258
             P    YN LI  +  A N           +A+G                   N   A 
Sbjct: 370 QSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAF 429

Query: 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS 318
           +++          G++   D+  Y  +I+ LC    + +A +LF  +    + P+ V+Y+
Sbjct: 430 QIYSSMEKA----GLVA--DIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYN 483

Query: 319 SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
           ++I GYC  G    A +L   +   G +P+ +SYN+ I    K EK  EA  L  +MI +
Sbjct: 484 TMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCKDEKWTEAEVLLKDMIEL 543

Query: 379 GVRP 382
           G++P
Sbjct: 544 GLKP 547



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 4/184 (2%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+ A   FN M     +P + ++N L+   +  K       +   +   GL P  V+  I
Sbjct: 355 LDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTI 414

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           LM+   +   +  AF     + +     D+   G LI GLC+ G   EAS LF       
Sbjct: 415 LMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMH 474

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            +    PN + Y ++I G CK+G   +   L  +M   G+ P+   YNS I++ C    W
Sbjct: 475 LK----PNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCKDEKW 530

Query: 248 EDAK 251
            +A+
Sbjct: 531 TEAE 534



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 126/292 (43%), Gaps = 23/292 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +LN+A   F+ M        + ++N+L+G L  ++  +    L  R+   GL P+ +S N
Sbjct: 284 KLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYN 343

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA---SGLFTKF 183
            L++ +C +  +  A     ++     SP + T   LI G      F+EA   +G+    
Sbjct: 344 TLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAG------FSEAKNSAGVTDMV 397

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
              + R  + P+ + Y  ++D L +   + K   ++  M+  G+  D ++Y  LI   C 
Sbjct: 398 REMEAR-GLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCV 456

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
             + ++A     +  E+H               P+ + Y ++I   CK+    +A  L  
Sbjct: 457 VGDMKEASKLFKSLDEMH-------------LKPNDVIYNTMIYGYCKEGSSYRALRLLK 503

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           +M   G++P+V  Y+S I   C   +  +A  L   +   G  P  S +N +
Sbjct: 504 EMGENGMVPNVASYNSTIQILCKDEKWTEAEVLLKDMIELGLKPSISIWNMI 555


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 120/457 (26%), Positives = 208/457 (45%), Gaps = 69/457 (15%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNF--ICLSER----LNTIGLLPDFVSLNILMNC 131
           M+     P    +N L+G++ G K  +NF  + L+E+    +   G++ + ++++    C
Sbjct: 357 MVKCGHMPGYVVYNILIGSICGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINVSSFTRC 416

Query: 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
            C       AF  +  ++ + F PD  T   ++  LC   K   A  LF +      R  
Sbjct: 417 LCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMK----RGG 472

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
           ++ +V  Y  ++D  CK G + + R  F +M+  G  P+   Y +LI  Y  A       
Sbjct: 473 LVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKA------- 525

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
              S A EL E  ++        C P++++Y ++I+  CK   V+KA ++F  M     +
Sbjct: 526 KKVSYANELFETMLSEG------CLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDV 579

Query: 312 PDV----------------VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           PDV                V Y +L+DG+C   R+++ARKL  ++  EGC P+   Y+ L
Sbjct: 580 PDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDAL 639

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPD---NSCILE----------AAELFRTLHNTKF 402
           I+   K+ K++EA  +  EM   G        S +++          A+++   +     
Sbjct: 640 IDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSC 699

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
             ++ ++  ++DGLCK  +   A++L + +   G +PNVVTYT MI G  + G       
Sbjct: 700 APNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIG------- 752

Query: 463 LLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                  KI  CL   ELL +M  + V P+ +T  +L
Sbjct: 753 -------KIETCL---ELLERMGSKGVAPNYVTYRVL 779



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 121/440 (27%), Positives = 195/440 (44%), Gaps = 52/440 (11%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIGLL 119
           K+G +E   A  +FN M  +  TP + ++ +L+ A   A K  Y N   L E + + G L
Sbjct: 489 KAGLIE--QARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANE--LFETMLSEGCL 544

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDV----------------VTLGCL 163
           P+ V+ + L++  CK   V  A     R+      PDV                VT G L
Sbjct: 545 PNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGAL 604

Query: 164 IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
           + G C   +  EA  L        C PN I     Y ++IDGLCK G +++ + +  +M 
Sbjct: 605 LDGFCKSHRVEEARKLLDAMSMEGCEPNQI----VYDALIDGLCKVGKLDEAQEVKTEMS 660

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
             G     + Y+SLI  Y      + A    S  LE               C P+V+ Y 
Sbjct: 661 EHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENS-------------CAPNVVIYT 707

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
            +I+ LCK    D+A +L   M+ +G  P+VV Y+++IDG+ ++G+I+   +L   + S+
Sbjct: 708 EMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSK 767

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI-------SMGVRPD----NSCILEAAE 392
           G  P+  +Y  LI+   K   ++ A +L  EM        + G R      N   +E+  
Sbjct: 768 GVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESLG 827

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE--PNVVTYTVMICG 450
           L   +        L+V+  L+D L K+ RL  A  L +++  +         TY  +I  
Sbjct: 828 LLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIES 887

Query: 451 LCIEGGIEKAYDLLPDMEEK 470
           LC+   +E A+ L  +M +K
Sbjct: 888 LCLANKVETAFQLFSEMTKK 907



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/425 (24%), Positives = 178/425 (41%), Gaps = 61/425 (14%)

Query: 86  FMPS---FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC---KMIGVS 139
           F+P    +  L+  L     +   +    R+     LP+ V+ + L+ C C   K +G  
Sbjct: 257 FVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLL-CGCLNKKQLGRC 315

Query: 140 DAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICY 199
                L  ++ +   P       L+   C  G  + A  L  K V    +   +P  + Y
Sbjct: 316 KR--VLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMV----KCGHMPGYVVY 369

Query: 200 ASIIDGLCKD------GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
             +I  +C D        ++     + +M   G+  +    +S  R  C A  +E     
Sbjct: 370 NILIGSICGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYE----- 424

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
              A  +  E + G G +     PD  +Y  ++N LC    ++ A  LF +MK  G++ D
Sbjct: 425 --KAFSVIREMI-GQGFI-----PDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVAD 476

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           V  Y+ ++D +C  G I+ ARK F  +   GC P+  +Y  LI++Y K +KV  A  L+ 
Sbjct: 477 VYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFE 536

Query: 374 EMISMGVRP---------DNSC----ILEAAELFRTLHNTKFELD--------------- 405
            M+S G  P         D  C    + +A ++F  +  +K   D               
Sbjct: 537 TMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERP 596

Query: 406 -LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            +  +  L+DG CKS R+  A +L   +   G EPN + Y  +I GLC  G +++A ++ 
Sbjct: 597 NVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 656

Query: 465 PDMEE 469
            +M E
Sbjct: 657 TEMSE 661



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 174/384 (45%), Gaps = 43/384 (11%)

Query: 110 SERLNTIGLLPDFVSL-NILMN-----CFC-KMIGVSDAFVALGRILRKVFSPDVVTLGC 162
           ++RL++  L+   +SL N+ M+     CF   +  V     AL  +  + F PD V    
Sbjct: 207 ADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTLVETENFVPDTVFYTK 266

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           LI GLC    F EA     +  A  C    +PNV+ Y++++ G      + + + +   M
Sbjct: 267 LISGLCEASLFEEAMDFLNRMRATSC----LPNVVTYSTLLCGCLNKKQLGRCKRVLNMM 322

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
              G YP   ++NSL+  YC +       G+ S A +L ++ V   G +     P  + Y
Sbjct: 323 MMEGCYPSPKIFNSLVHAYCTS-------GDHSYAYKLLKKMVKC-GHM-----PGYVVY 369

Query: 283 CSIINSLCKDV------LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
             +I S+C D       L+D A++ + +M + G++ + +  SS     C  G+ + A  +
Sbjct: 370 NILIGSICGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSV 429

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------- 383
              +  +G IPDTS+Y+ ++N      K+E A  L+ EM   G+  D             
Sbjct: 430 IREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCK 489

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
              I +A + F  +       ++  +  L+    K+ ++  A ELF+ +   G  PN+VT
Sbjct: 490 AGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVT 549

Query: 444 YTVMICGLCIEGGIEKAYDLLPDM 467
           Y+ +I G C  G +EKA  +   M
Sbjct: 550 YSALIDGHCKAGQVEKACQIFERM 573



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 109/252 (43%), Gaps = 32/252 (12%)

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           L ++L    +P+VV    +I GLC  GK  EA  L        C+PNV+     Y ++ID
Sbjct: 691 LSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVT----YTAMID 746

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC----------------AVNWE 248
           G    G +     L   M  +G+ P+   Y  LI  +CC                  +W 
Sbjct: 747 GFGMIGKIETCLELLERMGSKGVAPNYVTYRVLID-HCCKNGALDVAHNLLEEMKQTHWP 805

Query: 249 DAKGNTSAALE-LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK- 306
                    +E  ++EF+   G L  I   D   + S+   L  +++  KA+ L + ++ 
Sbjct: 806 THTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLI--KAQRLEMALRL 863

Query: 307 -------SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
                  S  ++     Y+SLI+  CL  +++ A +LF  +  +G IP+  S+ +LI   
Sbjct: 864 LEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGL 923

Query: 360 SKIEKVEEALSL 371
            +  K+ EAL L
Sbjct: 924 FRNSKISEALLL 935



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 142/364 (39%), Gaps = 74/364 (20%)

Query: 160 LGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLF 219
           L  L+R  C  G F+ A     +   F  RP+       Y  +I    K   ++   ++ 
Sbjct: 162 LNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRST----YNCLIQAFLKADRLDSASLIH 217

Query: 220 LDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDV 279
            +M    +  D F         C    W +A       L   E FV           PD 
Sbjct: 218 REMSLANLRMDGFTLRCFAYSLCKVGKWREA-----LTLVETENFV-----------PDT 261

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           + Y  +I+ LC+  L ++A +    M++   +P+VV YS+L+ G     ++   +++   
Sbjct: 262 VFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNM 321

Query: 340 IESEGCIPDTSSYNTLINSY-------------SKIEK---------------------- 364
           +  EGC P    +N+L+++Y              K+ K                      
Sbjct: 322 MMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKD 381

Query: 365 ------VEEALSLYGEMISMGVRPD-------NSCILEAAE------LFRTLHNTKFELD 405
                 ++ A   Y EM++ GV  +         C+  A +      + R +    F  D
Sbjct: 382 SLNFDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPD 441

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
            + ++ +++ LC + ++  A+ LF+++ R G   +V TYT+M+   C  G IE+A     
Sbjct: 442 TSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFN 501

Query: 466 DMEE 469
           +M E
Sbjct: 502 EMRE 505


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/399 (26%), Positives = 186/399 (46%), Gaps = 61/399 (15%)

Query: 75  FNYMIHMQPTPFMP---SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131
           ++ +  M    F+P   +++ ++G L       N   L E + +  ++PD  +  IL++ 
Sbjct: 465 YSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDS 524

Query: 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
           FCK+  +  A      ++R   +P+VVT   LI       K + A+ LF   ++  C   
Sbjct: 525 FCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGC--- 581

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
            IPNV+ Y ++IDG CK G + K   ++  M+G    PD  +Y  +              
Sbjct: 582 -IPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKI-------------- 626

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
                             + G I  P++ +Y ++++ LCK   V +A++L   M   G  
Sbjct: 627 ------------------DDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCE 668

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           P+ +VY +LIDG+C +G++D+A+ +F  +   G  P+  +Y++LI+   K ++++ AL +
Sbjct: 669 PNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKV 728

Query: 372 YGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
              M+      +NSC                  ++ ++  ++DGLCK  +   A+ L   
Sbjct: 729 LSRML------ENSC----------------APNVIIYTEMIDGLCKVGKTDEAYRLMSM 766

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           +   G  PNVVTYT MI G    G ++K  +L+  M  K
Sbjct: 767 MEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAK 805



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 129/475 (27%), Positives = 202/475 (42%), Gaps = 70/475 (14%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC---- 133
           MI     P    FNSL+ A      Y     L +++   G  P +V  NIL+   C    
Sbjct: 360 MITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEK 419

Query: 134 --KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
              +  +  A  A G +L      + V +  L R LC  GKF +A  +  + ++      
Sbjct: 420 LPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMS----KG 475

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
            IP+   Y+ +I  LC    V+   +LF +MK   + PD F Y  LI  +C         
Sbjct: 476 FIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFC-------KV 528

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
           G    A +  +E V         C P+V++Y ++I++  K   +  A ELF  M S G I
Sbjct: 529 GLLQQARKWFDEMVRDG------CAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCI 582

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS----------------SYNTL 355
           P+VV Y++LIDG+C  G+I+ A +++  +     IPD                  +Y  L
Sbjct: 583 PNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGAL 642

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRP---------DNSCIL----EAAELFRTLHNTKF 402
           ++   K  KV+EA  L   M   G  P         D  C +    EA  +F  +    +
Sbjct: 643 VDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGY 702

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
             ++  ++ L+D L K  RL  A ++  ++      PNV+ YT MI GLC  G  ++AY 
Sbjct: 703 GPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYR 762

Query: 463 LLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           L+  MEE                  K  +  K +EL+ +M  +   P+ +T  +L
Sbjct: 763 LMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVL 817



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/415 (26%), Positives = 187/415 (45%), Gaps = 42/415 (10%)

Query: 115 TIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFT 174
           T G  P     N L++ +C+    S A+  L ++      P  V    LI G+C   K  
Sbjct: 362 TEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLP 421

Query: 175 EASGLFTKFVAFD--CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
               L     A+      +V+ N +  +++   LC  G   K   +  +M  +G  PD  
Sbjct: 422 SLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTS 481

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            Y+ +I + C A   ++       A  L EE  + +    V+  PDV +Y  +I+S CK 
Sbjct: 482 TYSKVIGLLCNASKVDN-------AFLLFEEMKSNH----VV--PDVFTYTILIDSFCKV 528

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
            L+ +A++ F +M   G  P+VV Y++LI  Y    ++  A +LF  + SEGCIP+  +Y
Sbjct: 529 GLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTY 588

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCL 412
             LI+ + K  ++E+A  +Y  M        N+ I +    F+       + ++  +  L
Sbjct: 589 TALIDGHCKSGQIEKACQIYARM------RGNADIPDVDMYFKIDDGNIRDPNIFTYGAL 642

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIR 472
           VDGLCK+ +++ A +L   +   G EPN + Y  +I G C  G +++A  +         
Sbjct: 643 VDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFT------- 695

Query: 473 ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEES 527
                     KM++R   P+  T S L + L KD+     ++L    LSR  E S
Sbjct: 696 ----------KMSERGYGPNVYTYSSLIDRLFKDKR----LDLALKVLSRMLENS 736



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/426 (24%), Positives = 173/426 (40%), Gaps = 104/426 (24%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           RL  +G  P  ++ N L+  F +   +  A++    +    F+ D  TLGC +  LC  G
Sbjct: 222 RLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAG 281

Query: 172 KFTEASGL------------FTKFVAFDCRPNV----------------IPNVICYASII 203
           ++ EA  L            +T+ ++  C  ++                IPNV+ Y  ++
Sbjct: 282 RWREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILL 341

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
            G  +   + + + +   M   G YP   ++NSLI  YC         G+ S A +L ++
Sbjct: 342 CGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYC-------RSGDYSYAYKLLKK 394

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCK-------DVL---------------------- 294
                G+ G  C P  + Y  +I  +C        DVL                      
Sbjct: 395 M----GDCG--CQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNV 448

Query: 295 ------------VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
                        +KA  +  +M S+G IPD   YS +I   C   ++D+A  LF  ++S
Sbjct: 449 SNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKS 508

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF 402
              +PD  +Y  LI+S+ K+  +++A   + EM+  G  P                    
Sbjct: 509 NHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAP-------------------- 548

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
             ++  +  L+    K+ ++ SA ELF+ +   G  PNVVTYT +I G C  G IEKA  
Sbjct: 549 --NVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQ 606

Query: 463 LLPDME 468
           +   M 
Sbjct: 607 IYARMR 612



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 126/289 (43%), Gaps = 32/289 (11%)

Query: 106 FICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165
           F  +SER    G  P+  + + L++   K   +  A   L R+L    +P+V+    +I 
Sbjct: 694 FTKMSER----GYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMID 749

Query: 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225
           GLC  GK  EA  L +      C PNV+     Y ++IDG  K G V+K   L   M  +
Sbjct: 750 GLCKVGKTDEAYRLMSMMEEKGCHPNVVT----YTAMIDGFGKAGKVDKCLELMRQMGAK 805

Query: 226 GIYPDAFVYNSLIRVYCCAVN----------------WEDAKGNTSAALE-LHEEFVNGN 268
           G  P+   Y  LI  +CCA                  W          +E  + EF+   
Sbjct: 806 GCAPNFVTYRVLIN-HCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISL 864

Query: 269 GELGVICH----PDVLSYCSIINSLCKDVLVDKAKELFLDMKS--RGIIPDVVVYSSLID 322
           G L  I      P + +Y  +I+S CK   ++ A EL  +M S       D  +YSSLI+
Sbjct: 865 GLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIE 924

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
              L  ++D A +L+  +   G IP+ S +  L+    +I + EEAL L
Sbjct: 925 SLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEEALQL 973



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 148/382 (38%), Gaps = 72/382 (18%)

Query: 147 RILRKVFSPDVVTLG----CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202
           + LR++   D   LG     LIR  C  G +  A     +      +P+ +     Y ++
Sbjct: 183 QFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLT----YNAL 238

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
           +    +   ++   ++  +M   G   D +     + + C A  W +A      AL   E
Sbjct: 239 VRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREA-----LALIEKE 293

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
           EF             D + Y  +I+ LC+  L ++A +    M+S   IP+VV Y  L+ 
Sbjct: 294 EF-----------KLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLC 342

Query: 323 GYCLMGR-IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
           G CL  R +   +++   + +EGC P    +N+LI++Y +      A  L  +M   G +
Sbjct: 343 G-CLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQ 401

Query: 382 PDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS--AWELFKKLPRYGPEP 439
           P                         V+N L+ G+C + +L S    EL +K      + 
Sbjct: 402 P----------------------GYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDA 439

Query: 440 NVVTYTVMICG----LCIEGGIEKAYDLLPDMEEK------------------IRECLKA 477
           +VV   V +      LC  G  EKAY ++ +M  K                    +   A
Sbjct: 440 HVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNA 499

Query: 478 IELLHKMAKRYVKPDEITVSIL 499
             L  +M   +V PD  T +IL
Sbjct: 500 FLLFEEMKSNHVVPDVFTYTIL 521


>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
          Length = 800

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 116/443 (26%), Positives = 199/443 (44%), Gaps = 48/443 (10%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DA+  F  M      P   ++N L+  L  ++     + L E++N  G+ P  V+ + L+
Sbjct: 370 DAVSLFKEMAD-SGIPDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLL 428

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
            C+C    + +A      +  K F+P+VVT   L++G   +  F +A  L  +      +
Sbjct: 429 LCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMK----Q 484

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
             V  N   Y ++I+GLC  G V +V  +    +  G  P A  YNS+I  +  A     
Sbjct: 485 NGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKA----- 539

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
             G   +A  ++++             P++++Y S I+  CK    D A ++  D++ +G
Sbjct: 540 --GMMGSAFAVYQQMCAKG------IPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKG 591

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
           + PD+  Y+SLI G+C  G +  A ++ V +  +G +P+ S YN+ I  Y  ++ +EEAL
Sbjct: 592 LRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEAL 651

Query: 370 SLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL-------------DLTVFNCLVDGL 416
             Y +MI  G+  D +      + F    N  F L             D   F  L  GL
Sbjct: 652 RFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGL 711

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLK 476
           C++  +  A +L  ++ R    PNV+ Y ++I G    G +++A+ L  +M E       
Sbjct: 712 CRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLE------- 764

Query: 477 AIELLHKMAKRYVKPDEITVSIL 499
                     R + PD+ T  IL
Sbjct: 765 ----------RKIMPDDTTYDIL 777



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 153/347 (44%), Gaps = 40/347 (11%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +++A+  +  M     TP + ++ +L+     K  +     L   +   G+  +  + N 
Sbjct: 437 MDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNT 496

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N  C +  V +    L R   + F P  +T   +I G    G    A  ++ +     
Sbjct: 497 LINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQM---- 552

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C   + PN++ Y S IDG CK    +    +  D++ +G+ PD   YNSLI  +C     
Sbjct: 553 CAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIYGFC----- 607

Query: 248 EDAKGNTSAALE---------------LHEEFVNGNGELGVICHP--------------D 278
              +GN S AL+               ++  F+ G   L ++                 D
Sbjct: 608 --QEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLD 665

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
             +Y ++I+   KD  V  A +L+ +M ++G IPD + +++L  G C  G IDDARKL  
Sbjct: 666 TATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLD 725

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
            +      P+   YN LIN Y +  K++EA  L+ EM+   + PD++
Sbjct: 726 EMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDT 772



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 95/427 (22%), Positives = 181/427 (42%), Gaps = 66/427 (15%)

Query: 90  FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149
           F+ ++ A   +  Y + + L + +    + PD    ++ +   CK+   + A + L ++ 
Sbjct: 180 FDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQ 239

Query: 150 RKVFSP---------DVVTLG--------------------------CLIRGLCMQGKFT 174
              F P         DV+  G                           L+ G C+Q +  
Sbjct: 240 DAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVR 299

Query: 175 EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVY 234
           +A  +F + +    R  ++P  + Y  +I G  ++G   K   L   M+  G+ P    +
Sbjct: 300 KALDIFEETL----RDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEF 355

Query: 235 NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294
           N +I+       W+D       A+ L +E  +     G+   PD  +Y  +I+ LC+   
Sbjct: 356 NMVIKGLLNDKLWKD-------AVSLFKEMADS----GI---PDAFTYNILIHWLCQRRK 401

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           + +A  L+  M   G+ P +V Y SL+  YC+ G +D+A KL+  +  +G  P+  +Y T
Sbjct: 402 IREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTT 461

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNS---------CIL----EAAELFRTLHNTK 401
           L+  +      ++A +L  EM   GV  ++          C++    E  E+ +      
Sbjct: 462 LMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEG 521

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
           F      +N +++G  K+  + SA+ +++++   G  PN+VTYT  I G C     + A 
Sbjct: 522 FVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLAL 581

Query: 462 DLLPDME 468
            +L D+ 
Sbjct: 582 KMLNDVR 588



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 147/332 (44%), Gaps = 31/332 (9%)

Query: 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV 215
           D      ++R    +G + +A  LF +  A +  P+     +C  +I   LCK    N+ 
Sbjct: 176 DAWMFDVVMRACFKEGMYDDAVRLFDEMPASEIEPD---QRVCSVAIA-SLCKLRDANRA 231

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
            ++   M+  G  P  F +NS++ V           G    AL + +E +    ++ V+ 
Sbjct: 232 LLVLRKMQDAGFVPWDFTFNSVVDVLV-------KGGRMEEALHIKDELLATGKKMSVVL 284

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
                   ++++  C    V KA ++F +    G++P  V Y+ LI G    G  + A +
Sbjct: 285 A------TTLMHGYCLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYE 338

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------ 383
           L   +   G +P T+ +N +I      +  ++A+SL+ EM   G+ PD            
Sbjct: 339 LCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGI-PDAFTYNILIHWLC 397

Query: 384 -NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
               I EA  L+  ++ T  +  +  ++ L+   C +  +  A +L+ ++P  G  PNVV
Sbjct: 398 QRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVV 457

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEEKIREC 474
           TYT ++ G   +   +KAY LL +M++    C
Sbjct: 458 TYTTLMKGHINKAAFDKAYALLAEMKQNGVSC 489



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 138/305 (45%), Gaps = 48/305 (15%)

Query: 89  SFNSLLGALAGKKYYVNFIC----LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           ++N+L+  L      V  +C    + +R  T G +P  ++ N ++N F K   +  AF  
Sbjct: 493 TYNTLINGLC----VVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAV 548

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR-PNVIPNVICYASII 203
             ++  K   P++VT    I G C     T    L  K +  D R   + P++  Y S+I
Sbjct: 549 YQQMCAKGIPPNIVTYTSFIDGYCK----TSCCDLALKMLN-DVRCKGLRPDIAAYNSLI 603

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR------------------------ 239
            G C++G ++    + + M   G+ P+  VYNS I                         
Sbjct: 604 YGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGID 663

Query: 240 ----VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
                Y   ++     GN + AL+L+ E V   G +     PD +++ ++ + LC++  +
Sbjct: 664 LDTATYTTLIDGFSKDGNVTFALKLYSEMV-AKGNI-----PDHITFTALTHGLCRNGDI 717

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           D A++L  +M    I P+V++Y+ LI+GY   G++ +A +L   +     +PD ++Y+ L
Sbjct: 718 DDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTYDIL 777

Query: 356 INSYS 360
           +   S
Sbjct: 778 VGMKS 782



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 131/313 (41%), Gaps = 56/313 (17%)

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP-DVL 280
           M+ RG+ PDA     L+ V         A+  ++A        + G G      HP D  
Sbjct: 133 MEARGVTPDAKSRTDLLAV--------TARSASAADALALLAEMRGKG------HPLDAW 178

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
            +  ++ +  K+ + D A  LF +M +  I PD  V S  I   C +   + A  +   +
Sbjct: 179 MFDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKM 238

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNT 400
           +  G +P   ++N++++   K  ++EEAL +  E+++ G +                   
Sbjct: 239 QDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKK------------------- 279

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
              + + +   L+ G C    +R A ++F++  R G  P  VTYTV+I G   EG  EKA
Sbjct: 280 ---MSVVLATTLMHGYCLQREVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKA 336

Query: 461 YDLLPDMEEK------------IRECLK------AIELLHKMAKRYVKPDEITVSILEEL 502
           Y+L   M +             I+  L       A+ L  +MA   + PD  T +IL   
Sbjct: 337 YELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSGI-PDAFTYNILIHW 395

Query: 503 LNKDENCHECMNL 515
           L +     E +NL
Sbjct: 396 LCQRRKIREALNL 408



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 4/174 (2%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  ++ AL     M+     P +  +NS +      K     +   E++   G+  D  +
Sbjct: 609 EGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTAT 668

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
              L++ F K   V+ A      ++ K   PD +T   L  GLC  G   +A  L  +  
Sbjct: 669 YTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMN 728

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
             D R    PNV+ Y  +I+G  ++G + +   L  +M  R I PD   Y+ L+
Sbjct: 729 RLDIR----PNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTYDILV 778


>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 1 [Brachypodium distachyon]
 gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 2 [Brachypodium distachyon]
          Length = 704

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 117/479 (24%), Positives = 215/479 (44%), Gaps = 79/479 (16%)

Query: 67  ELNDALCFFNYMIH----MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF 122
             +DA  FF  + H     +  P + ++N +L +L  +      + L + L   GL PD 
Sbjct: 135 RFSDADAFFASLSHGAFGRRIAPNLQTYNIMLRSLCVRGDLDRAVTLFDSLRCRGLAPDR 194

Query: 123 VSLNILMNCFCKMIGVSDAFVALG-------------------------------RILRK 151
           ++ + LM+ F K   + +A   L                                R+  +
Sbjct: 195 ITYSTLMSGFVKNNRLDNALYLLDEMPSYEVQPDAVCYNALLGGCFRNGEFEKAMRVWEQ 254

Query: 152 VF-----SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGL 206
           +      SP++ T   ++ GLC  G F EA  ++ + VA     N  P++I Y ++I GL
Sbjct: 255 LVRDPGASPNLATYNVMLDGLCKLGMFKEAGDVWERMVA----NNHQPDMITYGTMIHGL 310

Query: 207 CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN-------WEDAKGNTSAALE 259
           C+   V+    ++ +M   G+ PD  +YNSL++ +C A         W+    +    + 
Sbjct: 311 CRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSGIRNVT 370

Query: 260 LHEEFVNGNGELGVI---------------CHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
            +   + G  + G++                 PD++++ ++I+ LC+    +K+ ++  +
Sbjct: 371 SYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQILEE 430

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
            ++ G   D   YSS+I G C  GR+DDA KL+  I  +   P++  YN LIN + +  K
Sbjct: 431 ARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQASK 490

Query: 365 VEEALSLYGEMISMGVRPD----NSCI---------LEAAELFRTLHNTKFELDLTVFNC 411
             +A+ +Y +M      P     N+ I         LEA+   R +      LD+  +  
Sbjct: 491 FSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKGCMLDVNTYGS 550

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           L+ GLC+  ++  A  L+ ++   G + +VV + ++I GLC  G +++A  LL +M+EK
Sbjct: 551 LIRGLCRDKKIDGALALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQLLSEMKEK 609



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 139/300 (46%), Gaps = 18/300 (6%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           +P M +F++++  L  K +    + + E   T G   D  S + +++  CK   + DA  
Sbjct: 402 SPDMVTFSTMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVK 461

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
              +I    F P+      LI G C   KF++A  ++++    DC P  I     Y ++I
Sbjct: 462 LYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTI----TYNTLI 517

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
            GLCK     +      +M  +G   D   Y SLIR  C      D K     AL L  +
Sbjct: 518 HGLCKAEKYLEASRFTREMLEKGCMLDVNTYGSLIRGLC-----RDKK--IDGALALWNQ 570

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG-IIPDVVVYSSLID 322
            ++   +  V+ H ++L     I+ LC    VD+A +L  +MK +    P+VV Y++L+D
Sbjct: 571 ILDKGLQTDVVMH-NIL-----IHGLCSAGKVDEASQLLSEMKEKNNCCPNVVTYNTLMD 624

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
           G+   G  D A  L+++I   G +PD  SYNT I       +  E + L  EM++ G+ P
Sbjct: 625 GFYETGCFDKAASLWMAILENGLVPDIISYNTRIKGLCSCNRTPEGVQLLNEMLASGIIP 684



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 98/455 (21%), Positives = 189/455 (41%), Gaps = 84/455 (18%)

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVF--SPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
           ++++ F + + + DA +A  R L      +P V +   L+       +F++A   F    
Sbjct: 89  VVLSAFSRAL-MPDAALAAFRRLPSFLGCNPGVRSHNALLDAFVRARRFSDADAFFASLS 147

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
                  + PN+  Y  ++  LC  G +++   LF  ++ RG+ PD   Y++L+  +   
Sbjct: 148 HGAFGRRIAPNLQTYNIMLRSLCVRGDLDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKN 207

Query: 245 VNWEDA----------------------------KGNTSAALELHEEFVNGNG------- 269
              ++A                             G    A+ + E+ V   G       
Sbjct: 208 NRLDNALYLLDEMPSYEVQPDAVCYNALLGGCFRNGEFEKAMRVWEQLVRDPGASPNLAT 267

Query: 270 ---------ELGVI--------------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                    +LG+                 PD+++Y ++I+ LC+   VD A  ++ +M 
Sbjct: 268 YNVMLDGLCKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMI 327

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
             G++PDVV+Y+SL+ G+C  GR+ +A K + S+   G I + +SYN ++        V+
Sbjct: 328 KTGLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSG-IRNVTSYNIMLKGLFDGGMVD 386

Query: 367 EALSLY----------GEMISMGVRPDNSC----ILEAAELFRTLHNTKFELDLTVFNCL 412
           +A  L+           +M++        C      ++ ++      +  ELD   ++ +
Sbjct: 387 KATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSM 446

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIR 472
           + GLCK  RL  A +L++K+     +PN   Y  +I G C       A  +   M E   
Sbjct: 447 ISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAEN-- 504

Query: 473 EC----LKAIELLHKM--AKRYVKPDEITVSILEE 501
           +C    +    L+H +  A++Y++    T  +LE+
Sbjct: 505 DCSPTTITYNTLIHGLCKAEKYLEASRFTREMLEK 539



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 99/418 (23%), Positives = 179/418 (42%), Gaps = 53/418 (12%)

Query: 66  VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
            +++ A   ++ MI     P +  +NSLL                + ++  G+  +  S 
Sbjct: 314 TDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSGI-RNVTSY 372

Query: 126 NILMNCFCKMIGVSDAFVALGRILRK--VFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           NI++       G+ D    L  +L K    SPD+VT   +I GLC +G F   S    + 
Sbjct: 373 NIMLKGLFDG-GMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKG-FANKSLQILEE 430

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
                +     +   Y+S+I GLCKDG ++    L+  +      P++ +YN+LI  +C 
Sbjct: 431 ARTSGKE---LDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQ 487

Query: 244 AVNWEDA--------KGNTSAALELHEEFVNG--------------NGELGVICHPDVLS 281
           A  + DA        + + S     +   ++G                 L   C  DV +
Sbjct: 488 ASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKGCMLDVNT 547

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI- 340
           Y S+I  LC+D  +D A  L+  +  +G+  DVV+++ LI G C  G++D+A +L   + 
Sbjct: 548 YGSLIRGLCRDKKIDGALALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQLLSEMK 607

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNT 400
           E   C P+  +YNTL++ + +    ++A SL+  ++  G+ P                  
Sbjct: 608 EKNNCCPNVVTYNTLMDGFYETGCFDKAASLWMAILENGLVP------------------ 649

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
               D+  +N  + GLC   R     +L  ++   G  P  +T+ +++  +   G I+
Sbjct: 650 ----DIISYNTRIKGLCSCNRTPEGVQLLNEMLASGIIPTAITWNILVRAVIKYGPIQ 703


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/399 (26%), Positives = 189/399 (47%), Gaps = 61/399 (15%)

Query: 75  FNYMIHMQPTPFMP---SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131
           ++ +  M    F+P   +++ ++G L       N   L E + +  ++PD  +  IL++ 
Sbjct: 465 YSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDS 524

Query: 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
           FCK+  +  A      ++R   +P+VVT   LI       K + A+ LF   ++  C   
Sbjct: 525 FCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGC--- 581

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
            IPNV+ Y ++IDG CK G + K   ++  M+G    PD                     
Sbjct: 582 -IPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPD--------------------- 619

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
                 ++++ +  +GN     I  P++ +Y ++++ LCK   V +A++L   M   G  
Sbjct: 620 ------VDMYFKIDDGN-----IRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCE 668

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           P+ +VY +LIDG+C +G++D+A+ +F  +   G  P+  +Y++LI+   K ++++ AL +
Sbjct: 669 PNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKV 728

Query: 372 YGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
              M+      +NSC                  ++ ++  ++DGLCK  +   A+ L   
Sbjct: 729 LSRML------ENSC----------------APNVIIYTEMIDGLCKVGKTDEAYRLMSM 766

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           +   G  PNVVTYT MI G    G ++K  +L+  M  K
Sbjct: 767 MEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAK 805



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 129/475 (27%), Positives = 202/475 (42%), Gaps = 70/475 (14%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC---- 133
           MI     P    FNSL+ A      Y     L +++   G  P +V  NIL+   C    
Sbjct: 360 MITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEK 419

Query: 134 --KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
              +  +  A  A G +L      + V +  L R LC  GKF +A  +  + ++      
Sbjct: 420 LPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMS----KG 475

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
            IP+   Y+ +I  LC    V+   +LF +MK   + PD F Y  LI  +C         
Sbjct: 476 FIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFC-------KV 528

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
           G    A +  +E V         C P+V++Y ++I++  K   +  A ELF  M S G I
Sbjct: 529 GLLQQARKWFDEMVRDG------CAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCI 582

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS----------------SYNTL 355
           P+VV Y++LIDG+C  G+I+ A +++  +     IPD                  +Y  L
Sbjct: 583 PNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGAL 642

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRP---------DNSCIL----EAAELFRTLHNTKF 402
           ++   K  KV+EA  L   M   G  P         D  C +    EA  +F  +    +
Sbjct: 643 VDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGY 702

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
             ++  ++ L+D L K  RL  A ++  ++      PNV+ YT MI GLC  G  ++AY 
Sbjct: 703 GPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYR 762

Query: 463 LLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           L+  MEE                  K  +  K +EL+ +M  +   P+ +T  +L
Sbjct: 763 LMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVL 817



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/415 (26%), Positives = 187/415 (45%), Gaps = 42/415 (10%)

Query: 115 TIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFT 174
           T G  P     N L++ +C+    S A+  L ++      P  V    LI G+C   K  
Sbjct: 362 TEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLP 421

Query: 175 EASGLFTKFVAFD--CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
               L     A+      +V+ N +  +++   LC  G   K   +  +M  +G  PD  
Sbjct: 422 SLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTS 481

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            Y+ +I + C A   ++       A  L EE  + +    V+  PDV +Y  +I+S CK 
Sbjct: 482 TYSKVIGLLCNASKVDN-------AFLLFEEMKSNH----VV--PDVFTYTILIDSFCKV 528

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
            L+ +A++ F +M   G  P+VV Y++LI  Y    ++  A +LF  + SEGCIP+  +Y
Sbjct: 529 GLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTY 588

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCL 412
             LI+ + K  ++E+A  +Y  M        N+ I +    F+       + ++  +  L
Sbjct: 589 TALIDGHCKSGQIEKACQIYARM------RGNADIPDVDMYFKIDDGNIRDPNIFTYGAL 642

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIR 472
           VDGLCK+ +++ A +L   +   G EPN + Y  +I G C  G +++A  +         
Sbjct: 643 VDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFT------- 695

Query: 473 ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEES 527
                     KM++R   P+  T S L + L KD+     ++L    LSR  E S
Sbjct: 696 ----------KMSERGYGPNVYTYSSLIDRLFKDKR----LDLALKVLSRMLENS 736



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/426 (24%), Positives = 173/426 (40%), Gaps = 104/426 (24%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           RL  +G  P  ++ N L+  F +   +  A++    +    F+ D  TLGC +  LC  G
Sbjct: 222 RLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAG 281

Query: 172 KFTEASGL------------FTKFVAFDCRPNV----------------IPNVICYASII 203
           ++ EA  L            +T+ ++  C  ++                IPNV+ Y  ++
Sbjct: 282 RWREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILL 341

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
            G  +   + + + +   M   G YP   ++NSLI  YC         G+ S A +L ++
Sbjct: 342 CGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYC-------RSGDYSYAYKLLKK 394

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCK-------DVL---------------------- 294
                G+ G  C P  + Y  +I  +C        DVL                      
Sbjct: 395 M----GDCG--CQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNV 448

Query: 295 ------------VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
                        +KA  +  +M S+G IPD   YS +I   C   ++D+A  LF  ++S
Sbjct: 449 SNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKS 508

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF 402
              +PD  +Y  LI+S+ K+  +++A   + EM+  G  P                    
Sbjct: 509 NHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAP-------------------- 548

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
             ++  +  L+    K+ ++ SA ELF+ +   G  PNVVTYT +I G C  G IEKA  
Sbjct: 549 --NVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQ 606

Query: 463 LLPDME 468
           +   M 
Sbjct: 607 IYARMR 612



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 126/289 (43%), Gaps = 32/289 (11%)

Query: 106 FICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165
           F  +SER    G  P+  + + L++   K   +  A   L R+L    +P+V+    +I 
Sbjct: 694 FTKMSER----GYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMID 749

Query: 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225
           GLC  GK  EA  L +      C PNV+     Y ++IDG  K G V+K   L   M  +
Sbjct: 750 GLCKVGKTDEAYRLMSMMEEKGCHPNVVT----YTAMIDGFGKAGKVDKCLELMRQMGAK 805

Query: 226 GIYPDAFVYNSLIRVYCCAVN----------------WEDAKGNTSAALE-LHEEFVNGN 268
           G  P+   Y  LI  +CCA                  W          +E  + EF+   
Sbjct: 806 GCAPNFVTYRVLIN-HCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISL 864

Query: 269 GELGVICH----PDVLSYCSIINSLCKDVLVDKAKELFLDMKS--RGIIPDVVVYSSLID 322
           G L  I      P + +Y  +I+S CK   ++ A EL  +M S       D  +YSSLI+
Sbjct: 865 GLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIE 924

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
              L  ++D A +L+  +   G IP+ S +  L+    +I + EEAL L
Sbjct: 925 SLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEEALQL 973



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 148/382 (38%), Gaps = 72/382 (18%)

Query: 147 RILRKVFSPDVVTLG----CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202
           + LR++   D   LG     LIR  C  G +  A     +      +P+ +     Y ++
Sbjct: 183 QFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLT----YNAL 238

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
           +    +   ++   ++  +M   G   D +     + + C A  W +A      AL   E
Sbjct: 239 VRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREA-----LALIEKE 293

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
           EF             D + Y  +I+ LC+  L ++A +    M+S   IP+VV Y  L+ 
Sbjct: 294 EF-----------KLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLC 342

Query: 323 GYCLMGR-IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
           G CL  R +   +++   + +EGC P    +N+LI++Y +      A  L  +M   G +
Sbjct: 343 G-CLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQ 401

Query: 382 PDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS--AWELFKKLPRYGPEP 439
           P                         V+N L+ G+C + +L S    EL +K      + 
Sbjct: 402 P----------------------GYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDA 439

Query: 440 NVVTYTVMICG----LCIEGGIEKAYDLLPDMEEK------------------IRECLKA 477
           +VV   V +      LC  G  EKAY ++ +M  K                    +   A
Sbjct: 440 HVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNA 499

Query: 478 IELLHKMAKRYVKPDEITVSIL 499
             L  +M   +V PD  T +IL
Sbjct: 500 FLLFEEMKSNHVVPDVFTYTIL 521



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 135/354 (38%), Gaps = 59/354 (16%)

Query: 67   ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            +L++A   F  M      P + +++SL+  L   K     + +  R+      P+ +   
Sbjct: 686  KLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYT 745

Query: 127  ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
             +++  CK+    +A+  +  +  K   P+VVT   +I G    GK  +   L  +  A 
Sbjct: 746  EMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAK 805

Query: 187  DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV------------- 233
             C PN +     Y  +I+  C  G ++    L  +MK +  +P                 
Sbjct: 806  GCAPNFVT----YRVLINHCCAAGLLDDAHQLLDEMK-QTYWPKHMAGYRKVIEGFNREF 860

Query: 234  ---------------------YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
                                 Y  LI  +C A       G    ALELH+E  +      
Sbjct: 861  IISLGLLDEIAENVAVPIIPAYRILIDSFCKA-------GRLELALELHKEMSSCTS--- 910

Query: 273  VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
                 D   Y S+I SL     VDKA EL+ DM  RG IP++ ++  L+ G   + R ++
Sbjct: 911  -YSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEE 969

Query: 333  ARKL-------FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
            A +L        V    EG +  +  Y  L  +++       +  L+G+  + G
Sbjct: 970  ALQLSDCICQMMVDFVREGFLGSSHDYEFL--NWTLCSTTWASYYLWGQSAATG 1021


>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
           [Oryza sativa Japonica Group]
          Length = 571

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 113/416 (27%), Positives = 192/416 (46%), Gaps = 51/416 (12%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P   S+N L+        V  A  A    LR+  SPD+ T   +I GLC  G+  +A  +
Sbjct: 154 PSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDV 213

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN---KVRVLFLDMKGRGIYPDAFVYNS 236
                A+     + P+V  Y S+IDG CK G       V +L  +M   GI P A  +  
Sbjct: 214 AKDIKAW----GLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGV 269

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI  YC          NT+AA+ + EE      + G+     V++Y S+I+ LC +  V+
Sbjct: 270 LINGYC-------KNSNTAAAVRVFEEM----KQQGIAA--SVVTYNSLISGLCSEGKVE 316

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +  +L  +M+  G+ P+ + +  ++ G+C  G + DA      +      PD   YN LI
Sbjct: 317 EGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILI 376

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNS---CIL----------EAAELFRTLHNTKFE 403
           + Y ++ K+E+A+++   M   G+ P+ +   C++           A+ L   +     E
Sbjct: 377 DVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIE 436

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D+  +N L+  LC    +R A +L  ++   G EPN +TY  +I G C +G I+ AY++
Sbjct: 437 ADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEI 496

Query: 464 LPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEE 501
              ME+                  +I +  +A +LL++M  + + P+ IT   ++E
Sbjct: 497 RTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKE 552



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 157/396 (39%), Gaps = 57/396 (14%)

Query: 84  TPFMPSFNSLLGAL-----AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGV 138
            P + ++NSL+        AG  Y+V+   L + +   G+ P  V+  +L+N +CK    
Sbjct: 223 APSVATYNSLIDGYCKKGGAGNMYHVDM--LLKEMVEAGISPTAVTFGVLINGYCKNSNT 280

Query: 139 SDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVIC 198
           + A      + ++  +  VVT   LI GLC +GK  E   L  +         + PN I 
Sbjct: 281 AAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDL----GLSPNEIT 336

Query: 199 YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL 258
           +  ++ G CK G +         M  R + PD  +YN LI VY      ED       A+
Sbjct: 337 FGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMED-------AM 389

Query: 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS 318
            + E              P+V +Y  +I    +      A  L  +MK +GI  DVV Y+
Sbjct: 390 AVKEAMAKKG------ISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYN 443

Query: 319 SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
            LI   C  G +  A KL   +   G  P+  +YNT+I  +                   
Sbjct: 444 VLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFC------------------ 485

Query: 379 GVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
               D   I  A E+   +   +   ++  +N  +   C+  ++  A +L  ++      
Sbjct: 486 ----DKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLV 541

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC 474
           PN +TY  +      EG +EK Y   PD    IR C
Sbjct: 542 PNGITYETI-----KEGMMEKGYT--PD----IRGC 566



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 139/323 (43%), Gaps = 17/323 (5%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G   +         M+    +P   +F  L+            + + E +   G+   
Sbjct: 239 KGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAAS 298

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+ N L++  C    V +    +  +     SP+ +T GC+++G C +G   +A+    
Sbjct: 299 VVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADAN---- 354

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
            ++      NV P+V+ Y  +ID   + G +     +   M  +GI P+   YN LI  +
Sbjct: 355 DWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGF 414

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
             + +W  A G      E+ E+ +            DV++Y  +I +LC    V KA +L
Sbjct: 415 SRSGDWRSASGLLD---EMKEKGIEA----------DVVTYNVLIGALCCKGEVRKAVKL 461

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
             +M   G+ P+ + Y+++I G+C  G I  A ++   +E      +  +YN  I  + +
Sbjct: 462 LDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQ 521

Query: 362 IEKVEEALSLYGEMISMGVRPDN 384
           I K++EA  L  EM+   + P+ 
Sbjct: 522 IGKMDEANDLLNEMLDKCLVPNG 544



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 99/220 (45%), Gaps = 17/220 (7%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V  NIL++ + ++  + DA      + +K  SP+V T  CLI G    G +  ASGL
Sbjct: 367 PDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGL 426

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             +         +  +V+ Y  +I  LC  G V K   L  +M   G+ P+   YN++I+
Sbjct: 427 LDEMK----EKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQ 482

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            +C        KGN  +A E+                 +V++Y   I   C+   +D+A 
Sbjct: 483 GFC-------DKGNIKSAYEIRTRMEKCRK------RANVVTYNVFIKYFCQIGKMDEAN 529

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           +L  +M  + ++P+ + Y ++ +G    G   D R   VS
Sbjct: 530 DLLNEMLDKCLVPNGITYETIKEGMMEKGYTPDIRGCTVS 569



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 72/171 (42%), Gaps = 4/171 (2%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++ DA+     M     +P + ++N L+   +    + +   L + +   G+  D V+ N
Sbjct: 384 KMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYN 443

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +L+   C    V  A   L  +      P+ +T   +I+G C +G    A  + T+    
Sbjct: 444 VLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRME-- 501

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            CR     NV+ Y   I   C+ G +++   L  +M  + + P+   Y ++
Sbjct: 502 KCRKRA--NVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETI 550


>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
          Length = 708

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/428 (26%), Positives = 189/428 (44%), Gaps = 46/428 (10%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ PD VS  +++   C M  V +A   L  ++ + F  D  T   +I   C +G     
Sbjct: 219 GVSPDCVSFKLMVVACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRV 278

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
            G F K V       + PNVI + ++I+GLCK G + +   L  +M  RG  P+ + + +
Sbjct: 279 VGYFWKMVEM----GLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTT 334

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI   C        KG T  A  L  + V  +G       P+V +Y ++IN  CK+  ++
Sbjct: 335 LIDGLC-------KKGWTEKAFRLFLKLVRSDGY-----KPNVHTYTAMINGYCKEDKLN 382

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A+ L   M+ +G++P+   Y++LIDG+C +G    A +L   +  EG  P+  +YN +I
Sbjct: 383 RAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAII 442

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD--NSCILEAAE-----------LFRTLHNTKFE 403
           +   K   ++EA  L  ++   G++ D     IL +              F  +    F 
Sbjct: 443 DGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFT 502

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D+  +  L+   C+  +++ +  LF++    G  P   TYT MICG C  G        
Sbjct: 503 PDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTS----- 557

Query: 464 LPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
                        A++L  +M+     PD IT   L   L K+    +  NL  + + + 
Sbjct: 558 ------------LAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKG 605

Query: 524 QEESKLTR 531
               ++TR
Sbjct: 606 LSPCEVTR 613



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 189/406 (46%), Gaps = 40/406 (9%)

Query: 93  LLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKV 152
           ++ A   K Y    +    ++  +GL P+ ++   L+N  CK   +  AF  L  ++R+ 
Sbjct: 265 IIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRG 324

Query: 153 FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFV 212
           + P+V T   LI GLC +G   +A  LF K V  D      PNV  Y ++I+G CK+  +
Sbjct: 325 WKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSD---GYKPNVHTYTAMINGYCKEDKL 381

Query: 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
           N+  +L   M+ +G+ P+   Y +LI  +C         GN   A EL +      G+ G
Sbjct: 382 NRAEMLLSRMQEQGLVPNTNTYTTLIDGHC-------KVGNFVRAYELMDLM----GKEG 430

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
               P++ +Y +II+ LCK   +D+A  L   +   G+  D V Y+ L+  +C     + 
Sbjct: 431 F--SPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNR 488

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392
           +   F  +   G  PD  SY TLI+ + + ++++E+  L+ E +S+G+ P          
Sbjct: 489 SLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKK------- 541

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
                           +  ++ G C+      A +LF+++  +G  P+ +TY  +I GLC
Sbjct: 542 ---------------TYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLC 586

Query: 453 IEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSI 498
            E  ++ A +L   M +K     +   L   +A  Y K D+ + +I
Sbjct: 587 KESKLDDARNLYDAMMDKGLSPCEVTRL--TLAYEYCKKDDSSTAI 630



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 159/345 (46%), Gaps = 40/345 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL+    +LN +++    M  V  A      + ++  SPD V+   ++   C  G+  EA
Sbjct: 184 GLVXSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEA 243

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
                  V    R  ++ N  C   IID  C+ G+VN+V   F  M   G+ P+   + +
Sbjct: 244 EKWLNAMVE---RGFIVDNATC-TLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTA 299

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI   C        +G+   A EL EE V    +      P+V ++ ++I+ LCK    +
Sbjct: 300 LINGLC-------KQGSIKQAFELLEEMVRRGWK------PNVYTHTTLIDGLCKKGWTE 346

Query: 297 KAKELFLDM-KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           KA  LFL + +S G  P+V  Y+++I+GYC   +++ A  L   ++ +G +P+T++Y TL
Sbjct: 347 KAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTL 406

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDG 415
           I+ + K+     A  L   M   G  P                      ++  +N ++DG
Sbjct: 407 IDGHCKVGNFVRAYELMDLMGKEGFSP----------------------NIYTYNAIIDG 444

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
           LCK   L  A+ L  K+  +G + + VTYT+++   C +    ++
Sbjct: 445 LCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRS 489



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 149/331 (45%), Gaps = 55/331 (16%)

Query: 160 LGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLF 219
           + C++      GK  EA  +  +         ++ +      ++D     G V     +F
Sbjct: 157 MQCMVMNFAENGKLKEAVNMVVEMQ----NQGLVXSTQTLNCVLDVAVGMGLVEIAENMF 212

Query: 220 LDMKGRGIYPDAFVYNSLIRVYCC-------AVNWEDA---KG----NTSAALEL----H 261
           ++M  RG+ PD   +  L+ V CC       A  W +A   +G    N +  L +     
Sbjct: 213 VEMCQRGVSPDCVSF-KLMVVACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIIDAFCQ 271

Query: 262 EEFVN-------GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
           + +VN          E+G+   P+V+++ ++IN LCK   + +A EL  +M  RG  P+V
Sbjct: 272 KGYVNRVVGYFWKMVEMGLA--PNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNV 329

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVS-IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
             +++LIDG C  G  + A +LF+  + S+G  P+  +Y  +IN Y K +K+  A  L  
Sbjct: 330 YTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLS 389

Query: 374 EMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
            M   G+ P+ +                       +  L+DG CK      A+EL   + 
Sbjct: 390 RMQEQGLVPNTN----------------------TYTTLIDGHCKVGNFVRAYELMDLMG 427

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           + G  PN+ TY  +I GLC +G +++AY LL
Sbjct: 428 KEGFSPNIYTYNAIIDGLCKKGSLDEAYRLL 458



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 118/255 (46%), Gaps = 32/255 (12%)

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353
           LV+ A+ +F++M  RG+ PD V +  ++   C MGR+ +A K   ++   G I D ++  
Sbjct: 204 LVEIAENMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAEKWLNAMVERGFIVDNATCT 263

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNT 400
            +I+++ +   V   +  + +M+ MG+ P+                I +A EL   +   
Sbjct: 264 LIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRR 323

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY-GPEPNVVTYTVMICGLCIEGGIEK 459
            ++ ++     L+DGLCK      A+ LF KL R  G +PNV TYT MI G C E  + +
Sbjct: 324 GWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNR 383

Query: 460 AYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEE 501
           A  LL  M+E                  K+   ++A EL+  M K    P+  T + + +
Sbjct: 384 AEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIID 443

Query: 502 LLNKDENCHECMNLL 516
            L K  +  E   LL
Sbjct: 444 GLCKKGSLDEAYRLL 458



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 108/248 (43%), Gaps = 20/248 (8%)

Query: 81  MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIG---LLPDFVSLNILMNCFCKMIG 137
           MQ    +P+ N+    + G     NF+   E ++ +G     P+  + N +++  CK   
Sbjct: 391 MQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGS 450

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           + +A+  L ++       D VT   L+   C Q     +   F K +    +    P++ 
Sbjct: 451 LDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKML----KVGFTPDIH 506

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            Y ++I   C+   + +   LF +    G+ P    Y S+I  YC         GNTS A
Sbjct: 507 SYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYC-------RYGNTSLA 559

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
           ++L +   N        C PD ++Y ++I+ LCK+  +D A+ L+  M  +G+ P  V  
Sbjct: 560 VKLFQRMSNHG------CAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVTR 613

Query: 318 SSLIDGYC 325
            +L   YC
Sbjct: 614 LTLAYEYC 621



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 56/116 (48%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           + + N +L FFN M+ +  TP + S+ +L+     +K       L E   ++GL+P   +
Sbjct: 483 QADTNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKT 542

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
              ++  +C+    S A     R+     +PD +T G LI GLC + K  +A  L+
Sbjct: 543 YTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLY 598


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 123/479 (25%), Positives = 201/479 (41%), Gaps = 98/479 (20%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN------------ 130
           P P +  FNSL+ +   +K Y     L  R+ T G  P +V  NI +             
Sbjct: 175 PNPSL--FNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPD 232

Query: 131 -----------------------------CFCKMIGVSDAFVALGRILRKVFSPDVVTLG 161
                                        C C +     AF  +  ++RK F PD  T  
Sbjct: 233 LLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYS 292

Query: 162 CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD 221
            +I  LC   K  +A  LF +         V P+V  Y  +ID  CK G + + + LF +
Sbjct: 293 KVITFLCHATKVEKAFLLFQEMKMV----GVTPDVYTYTILIDSFCKAGLIEQAQWLFEE 348

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAK----------------------------GN 253
           M+  G  P    Y +LI  Y  A     A                             GN
Sbjct: 349 MRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGN 408

Query: 254 TSAALELHEEFV----NGNGELGVICH------PDVLSYCSIINSLCKDVLVDKAKELFL 303
            S A E++ + +    + + +    C       P+V++Y ++++ LCK   VD A EL  
Sbjct: 409 ISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLD 468

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            M S G  P+ +VY +LIDG+C  G+ID A+++F+ +   G +P   +Y +LI+   K  
Sbjct: 469 AMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDG 528

Query: 364 KVEEALSLYGEMISMGVRP---------DNSCIL----EAAELFRTLHNTKFELDLTVFN 410
           +++ A+ +  +M+     P         D  C +    +A +L   +       ++  + 
Sbjct: 529 RLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYT 588

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
            L+DGL K+ ++  + +LF ++ R G  PN VTY V+I  LC  G ++KA  LL +M++
Sbjct: 589 ALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQ 647



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 113/453 (24%), Positives = 188/453 (41%), Gaps = 92/453 (20%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G +E   A   F  M  +  +P + ++ +L+ A    K       +  R+   G  P+
Sbjct: 335 KAGLIE--QAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPN 392

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRIL----------------RKVFSPDVVTLGCLIR 165
            V+   L++  CK   +S AF    +++                R   +P+VVT G L+ 
Sbjct: 393 DVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVD 452

Query: 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225
           GLC   K   A  L    ++  C PN I     Y ++IDG CK G ++  + +FL M   
Sbjct: 453 GLCKAHKVDHAHELLDAMLSSGCEPNHI----VYDALIDGFCKAGKIDSAQEVFLQMTKC 508

Query: 226 GIYPDAFVYNSLI-RVY-------CCAVNWEDAKGNTSAALELHEEFVNGNGELGVI--- 274
           G  P    Y SLI R++          V  +  K + +  +  +   ++G   +G     
Sbjct: 509 GYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKA 568

Query: 275 -----------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
                      C P+V++Y ++I+ L K   +D + +LF  M  +G  P+ V Y  LI+ 
Sbjct: 569 LKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINH 628

Query: 324 YCLMGRIDDAR--------------------------KLFVS-------IESEGCIPDTS 350
            C  G +D AR                          K F++       +ES G +P   
Sbjct: 629 LCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAP 688

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISM--GVRPDN-------------SCILEAAELFR 395
            Y  LI+ +SK  ++E A+ L+ EM+ +   V+ DN             S + EA  L+ 
Sbjct: 689 VYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYS 748

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
            +    F  +L+VF CL+ GL +  +   A +L
Sbjct: 749 EMTRRGFVPELSVFVCLIKGLVEVKKWDEALQL 781



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 118/479 (24%), Positives = 179/479 (37%), Gaps = 103/479 (21%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P   ++N+L+  L+          + + ++  G   D  ++    +  CK    +DA   
Sbjct: 38  PSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADA--- 94

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI----------- 193
           L  I R+ F  D V    +I GL     F EA     +     C PNV+           
Sbjct: 95  LDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLK 154

Query: 194 --------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233
                               PN   + S++   C +        L   M   G  P   V
Sbjct: 155 KKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVV 214

Query: 234 YNSLIRVYC-------------------------CAVNWEDAK---------GNTSAALE 259
           YN  I   C                         C +N  +           G    A +
Sbjct: 215 YNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQ 274

Query: 260 LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSS 319
           L +E +      G +  PD  +Y  +I  LC    V+KA  LF +MK  G+ PDV  Y+ 
Sbjct: 275 LIKEMMRK----GFV--PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTI 328

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           LID +C  G I+ A+ LF  + S GC P   +Y  LI++Y K ++V +A  ++  M+  G
Sbjct: 329 LIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAG 388

Query: 380 VRP---------DNSC----ILEAAELFRTLHNTKFELD----------------LTVFN 410
            RP         D  C    I +A E++  L  T    D                +  + 
Sbjct: 389 CRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYG 448

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
            LVDGLCK+ ++  A EL   +   G EPN + Y  +I G C  G I+ A ++   M +
Sbjct: 449 ALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTK 507



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 109/440 (24%), Positives = 174/440 (39%), Gaps = 85/440 (19%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           L   G  P  V+ N L+        V   F     +    F  D  T+GC    LC +G+
Sbjct: 31  LKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGR 90

Query: 173 FTEA--------------------SGL-----FTKFVAFDCR---PNVIPNVICYASIID 204
           + +A                    SGL     F + ++F  R    + IPNV+ Y +++ 
Sbjct: 91  WADALDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLS 150

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG--NTSAALELHE 262
           G  K   +   + +   M   G  P+  ++NSL+  YC   ++  A    N         
Sbjct: 151 GFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPP 210

Query: 263 EFVNGNGELGVIC------HPDVLSYCSII--------------------NSLCKDVLVD 296
            +V  N  +G IC       PD+L     I                      LC     D
Sbjct: 211 GYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFD 270

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           KA +L  +M  +G +PD   YS +I   C   +++ A  LF  ++  G  PD  +Y  LI
Sbjct: 271 KAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILI 330

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRP-------------DNSCILEAAELFRTLHNTKFE 403
           +S+ K   +E+A  L+ EM S+G  P                 + +A ++F  + +    
Sbjct: 331 DSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCR 390

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKL----------------PRYGPEPNVVTYTVM 447
            +   +  LVDGLCK+  +  A+E++ KL                 R+   PNVVTY  +
Sbjct: 391 PNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGAL 450

Query: 448 ICGLCIEGGIEKAYDLLPDM 467
           + GLC    ++ A++LL  M
Sbjct: 451 VDGLCKAHKVDHAHELLDAM 470



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 125/287 (43%), Gaps = 31/287 (10%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           ++   G LP   +   L++   K   +  A   L ++L+   +P+VVT   +I GLC  G
Sbjct: 504 QMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIG 563

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
           +  +A  L +      C PNV+     Y ++IDGL K G ++    LF  M  +G  P+ 
Sbjct: 564 ESEKALKLLSLMEEKGCSPNVVT----YTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNY 619

Query: 232 FVYNSLIRVYCCAVNWEDAK----------------GNTSAALELHEEFVNGNGEL---- 271
             Y  LI   C A   + A+                G   A     + F+   G L    
Sbjct: 620 VTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEME 679

Query: 272 --GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS--RGIIPDVVVYSSLIDGYCLM 327
             G +  P    Y  +I+   K   ++ A EL  +M      +  D  +Y+SLI   CL 
Sbjct: 680 SYGTV--PIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLA 737

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL-YG 373
            ++++A +L+  +   G +P+ S +  LI    +++K +EAL L YG
Sbjct: 738 SQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYG 784



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/387 (19%), Positives = 144/387 (37%), Gaps = 88/387 (22%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P+ + Y +++  L   G V+    +  +M   G   D F         C    W DA   
Sbjct: 38  PSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADALDM 97

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
                   E+F             D +    +I+ L +    D+A      M+    IP+
Sbjct: 98  IE-----REDF-----------KLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPN 141

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           VV Y +L+ G+    ++   +++   + +EGC P+ S +N+L++SY   +    A  L  
Sbjct: 142 VVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLN 201

Query: 374 EMISMGVRPD-----------------------------------NSCIL---------- 388
            M + G  P                                     +C+L          
Sbjct: 202 RMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFAR 261

Query: 389 ---------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
                    +A +L + +    F  D + ++ ++  LC + ++  A+ LF+++   G  P
Sbjct: 262 CLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTP 321

Query: 440 NVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELL 481
           +V TYT++I   C  G IE+A  L  +M                    K ++  +A ++ 
Sbjct: 322 DVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIF 381

Query: 482 HKMAKRYVKPDEITVSILEELLNKDEN 508
           H+M     +P+++T   L + L K  N
Sbjct: 382 HRMVDAGCRPNDVTYGALVDGLCKAGN 408


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 123/479 (25%), Positives = 201/479 (41%), Gaps = 98/479 (20%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN------------ 130
           P P +  FNSL+ +   +K Y     L  R+ T G  P +V  NI +             
Sbjct: 110 PNPSL--FNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPD 167

Query: 131 -----------------------------CFCKMIGVSDAFVALGRILRKVFSPDVVTLG 161
                                        C C +     AF  +  ++RK F PD  T  
Sbjct: 168 LLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYS 227

Query: 162 CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD 221
            +I  LC   K  +A  LF +         V P+V  Y  +ID  CK G + + + LF +
Sbjct: 228 KVITFLCHATKVEKAFLLFQEMKMV----GVTPDVYTYTILIDSFCKAGLIEQAQWLFEE 283

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAK----------------------------GN 253
           M+  G  P    Y +LI  Y  A     A                             GN
Sbjct: 284 MRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGN 343

Query: 254 TSAALELHEEFV----NGNGELGVICH------PDVLSYCSIINSLCKDVLVDKAKELFL 303
            S A E++ + +    + + +    C       P+V++Y ++++ LCK   VD A EL  
Sbjct: 344 ISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLD 403

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            M S G  P+ +VY +LIDG+C  G+ID A+++F+ +   G +P   +Y +LI+   K  
Sbjct: 404 AMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDG 463

Query: 364 KVEEALSLYGEMISMGVRP---------DNSCIL----EAAELFRTLHNTKFELDLTVFN 410
           +++ A+ +  +M+     P         D  C +    +A +L   +       ++  + 
Sbjct: 464 RLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYT 523

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
            L+DGL K+ ++  + +LF ++ R G  PN VTY V+I  LC  G ++KA  LL +M++
Sbjct: 524 ALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQ 582



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 113/453 (24%), Positives = 188/453 (41%), Gaps = 92/453 (20%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G +E   A   F  M  +  +P + ++ +L+ A    K       +  R+   G  P+
Sbjct: 270 KAGLIE--QAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPN 327

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRIL----------------RKVFSPDVVTLGCLIR 165
            V+   L++  CK   +S AF    +++                R   +P+VVT G L+ 
Sbjct: 328 DVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVD 387

Query: 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225
           GLC   K   A  L    ++  C PN I     Y ++IDG CK G ++  + +FL M   
Sbjct: 388 GLCKAHKVDHAHELLDAMLSSGCEPNHI----VYDALIDGFCKAGKIDSAQEVFLQMTKC 443

Query: 226 GIYPDAFVYNSLI-RVY-------CCAVNWEDAKGNTSAALELHEEFVNGNGELGVI--- 274
           G  P    Y SLI R++          V  +  K + +  +  +   ++G   +G     
Sbjct: 444 GYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKA 503

Query: 275 -----------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
                      C P+V++Y ++I+ L K   +D + +LF  M  +G  P+ V Y  LI+ 
Sbjct: 504 LKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINH 563

Query: 324 YCLMGRIDDAR--------------------------KLFVS-------IESEGCIPDTS 350
            C  G +D AR                          K F++       +ES G +P   
Sbjct: 564 LCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAP 623

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISM--GVRPDN-------------SCILEAAELFR 395
            Y  LI+ +SK  ++E A+ L+ EM+ +   V+ DN             S + EA  L+ 
Sbjct: 624 VYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYS 683

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
            +    F  +L+VF CL+ GL +  +   A +L
Sbjct: 684 EMTRRGFVPELSVFVCLIKGLVEVKKWDEALQL 716



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 170/412 (41%), Gaps = 52/412 (12%)

Query: 93  LLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKV 152
           ++  L    Y+   +    R+     +P+ V+   L++ F K   +      +  ++ + 
Sbjct: 48  MISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEG 107

Query: 153 FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFV 212
            +P+      L+   C +  +  A  L  +     C P  +     Y   I  +C    +
Sbjct: 108 CNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYV----VYNIFIGSICGQEKL 163

Query: 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED------AKGNTSAALELHEEFVN 266
               +L L  K   IY +    N ++      VN  +        G    A +L +E + 
Sbjct: 164 PSPDLLDLAEK---IYGEMLAANCVLN----KVNVANFARCLCGVGKFDKAFQLIKEMMR 216

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
                G +  PD  +Y  +I  LC    V+KA  LF +MK  G+ PDV  Y+ LID +C 
Sbjct: 217 K----GFV--PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCK 270

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---- 382
            G I+ A+ LF  + S GC P   +Y  LI++Y K ++V +A  ++  M+  G RP    
Sbjct: 271 AGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVT 330

Query: 383 -----DNSC----ILEAAELFRTLHNTKFELD----------------LTVFNCLVDGLC 417
                D  C    I +A E++  L  T    D                +  +  LVDGLC
Sbjct: 331 YGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLC 390

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           K+ ++  A EL   +   G EPN + Y  +I G C  G I+ A ++   M +
Sbjct: 391 KAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTK 442



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 105/408 (25%), Positives = 165/408 (40%), Gaps = 64/408 (15%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G   D  ++    +  CK    +DA   L  I R+ F  D V    +I GL     F EA
Sbjct: 5   GFCMDRFTVGCFAHALCKEGRWADA---LDMIEREDFKLDTVLCTHMISGLMEASYFDEA 61

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
                +     C    IPNV+ Y +++ G  K   +   + +   M   G  P+  ++NS
Sbjct: 62  MSFLHRMRCNSC----IPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNS 117

Query: 237 LIRVYCCAVNWEDAKG--NTSAALELHEEFVNGNGELGVIC------HPDVLSYCSII-- 286
           L+  YC   ++  A    N          +V  N  +G IC       PD+L     I  
Sbjct: 118 LVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYG 177

Query: 287 ------------------NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                               LC     DKA +L  +M  +G +PD   YS +I   C   
Sbjct: 178 EMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHAT 237

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP------ 382
           +++ A  LF  ++  G  PD  +Y  LI+S+ K   +E+A  L+ EM S+G  P      
Sbjct: 238 KVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYT 297

Query: 383 -------DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL--- 432
                      + +A ++F  + +     +   +  LVDGLCK+  +  A+E++ KL   
Sbjct: 298 ALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGT 357

Query: 433 -------------PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
                         R+   PNVVTY  ++ GLC    ++ A++LL  M
Sbjct: 358 SDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAM 405



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 125/287 (43%), Gaps = 31/287 (10%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           ++   G LP   +   L++   K   +  A   L ++L+   +P+VVT   +I GLC  G
Sbjct: 439 QMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIG 498

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
           +  +A  L +      C PNV+     Y ++IDGL K G ++    LF  M  +G  P+ 
Sbjct: 499 ESEKALKLLSLMEEKGCSPNVVT----YTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNY 554

Query: 232 FVYNSLIRVYCCAVNWEDAK----------------GNTSAALELHEEFVNGNGEL---- 271
             Y  LI   C A   + A+                G   A     + F+   G L    
Sbjct: 555 VTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEME 614

Query: 272 --GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS--RGIIPDVVVYSSLIDGYCLM 327
             G +  P    Y  +I+   K   ++ A EL  +M      +  D  +Y+SLI   CL 
Sbjct: 615 SYGTV--PIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLA 672

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL-YG 373
            ++++A +L+  +   G +P+ S +  LI    +++K +EAL L YG
Sbjct: 673 SQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYG 719



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 108/258 (41%), Gaps = 48/258 (18%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ V+   +++  C++     A   L  +  K  SP+VVT   LI GL   GK   +  L
Sbjct: 482 PNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDL 541

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK---------------- 223
           FT+     C PN +     Y  +I+ LC  G ++K R+L  +MK                
Sbjct: 542 FTQMSRKGCSPNYVT----YRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQ 597

Query: 224 -----------------GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266
                              G  P A VY  LI  +  A       G    A+ELH+E + 
Sbjct: 598 GFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKA-------GRLEIAMELHKEMM- 649

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
              E+      D   Y S+I +LC    V++A  L+ +M  RG +P++ V+  LI G   
Sbjct: 650 ---EVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVE 706

Query: 327 MGRIDDARKLFVSIESEG 344
           + + D+A +L   I  EG
Sbjct: 707 VKKWDEALQLCYGICHEG 724



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/296 (20%), Positives = 118/296 (39%), Gaps = 72/296 (24%)

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           +I+ L +    D+A      M+    IP+VV Y +L+ G+    ++   +++   + +EG
Sbjct: 48  MISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEG 107

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------------------- 383
           C P+ S +N+L++SY   +    A  L   M + G  P                      
Sbjct: 108 CNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPD 167

Query: 384 --------------NSCIL-------------------EAAELFRTLHNTKFELDLTVFN 410
                          +C+L                   +A +L + +    F  D + ++
Sbjct: 168 LLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYS 227

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE- 469
            ++  LC + ++  A+ LF+++   G  P+V TYT++I   C  G IE+A  L  +M   
Sbjct: 228 KVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSV 287

Query: 470 -----------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDEN 508
                            K ++  +A ++ H+M     +P+++T   L + L K  N
Sbjct: 288 GCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGN 343


>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 566

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 117/415 (28%), Positives = 187/415 (45%), Gaps = 35/415 (8%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           KSGE+E  +AL   +   H    P   +++++L +L  +      + + +R       PD
Sbjct: 151 KSGEIE--EALRVLD---HTSVAPNAATYDAVLCSLCDRGKLKQAMQVLDRQLQSKCYPD 205

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+  +L++  CK  GV  A      +  K   PDVVT   LI+G C +G+  EA     
Sbjct: 206 VVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLK 265

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           K  ++ C+ +VI + +    I+  LC  G       L   M  +G +P    +N LI   
Sbjct: 266 KLPSYGCQSDVISHNM----ILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFL 321

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C        KG    AL + E  +  +G       P+  S+  +I   C    +D+A E 
Sbjct: 322 C-------QKGLLGKALNVLE-MMPKHGHT-----PNSRSFNPLIQGFCNRKGIDRAIEH 368

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
              M SRG  PD+V Y+ L+   C  G++DDA  +   + S+GC P   SYNT+I+   K
Sbjct: 369 LEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLK 428

Query: 362 IEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTV 408
           + K E A+ L  EM   G++PD                + EA + F  L     + +  +
Sbjct: 429 VGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFI 488

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
           +N ++ GLCK+ +   A +    +   G +P   +YT +I G+  EG  E+A  L
Sbjct: 489 YNSIMMGLCKAQQTSLAIDFLVDMVANGCKPTEASYTTLIKGITYEGLAEEASKL 543



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 162/370 (43%), Gaps = 61/370 (16%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
           PDVV    LIR  C  G+   A    T+ +        + +   Y  +I+  CK G + +
Sbjct: 102 PDVVACTALIREFCKIGRTKNA----TRIMGILEESGAVIDANSYNVLINAYCKSGEIEE 157

Query: 215 -VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
            +RVL        + P+A  Y++++   C        +G    A+++ +       +L  
Sbjct: 158 ALRVL----DHTSVAPNAATYDAVLCSLC-------DRGKLKQAMQVLDR------QLQS 200

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
            C+PDV++   +I++ CK+  V +A +LF +M+ +G  PDVV Y+ LI G+C  GR+D+A
Sbjct: 201 KCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEA 260

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAEL 393
                 + S GC  D  S+N ++ S     +  +A+ L   M+  G  P           
Sbjct: 261 IIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPS---------- 310

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
                       +  FN L++ LC+   L  A  + + +P++G  PN  ++  +I G C 
Sbjct: 311 ------------VVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCN 358

Query: 454 EGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECM 513
             GI+                 +AIE L  M  R   PD +T +IL   L KD    + +
Sbjct: 359 RKGID-----------------RAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAV 401

Query: 514 NLLPSFLSRN 523
            +L    S+ 
Sbjct: 402 VILSQLSSKG 411



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 103/420 (24%), Positives = 177/420 (42%), Gaps = 52/420 (12%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           E +   G +PD V+   L+  FCK+    +A   +G +       D  +   LI   C  
Sbjct: 93  EYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEESGAVIDANSYNVLINAYCKS 152

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK-VRVLFLDMKGRGIYP 229
           G+  EA  +           +V PN   Y +++  LC  G + + ++VL   ++ +  YP
Sbjct: 153 GEIEEALRVLD-------HTSVAPNAATYDAVLCSLCDRGKLKQAMQVLDRQLQSK-CYP 204

Query: 230 DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSL 289
           D      LI   C        +     A++L  E + G G     C PDV++Y  +I   
Sbjct: 205 DVVTCTVLIDATC-------KESGVGQAMKLFNE-MRGKG-----CKPDVVTYNVLIKGF 251

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
           CK+  +D+A      + S G   DV+ ++ ++   C  GR  DA KL  ++  +GC P  
Sbjct: 252 CKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSV 311

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRT 396
            ++N LIN   +   + +AL++   M   G  P++               I  A E    
Sbjct: 312 VTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEI 371

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           + +     D+  +N L+  LCK  ++  A  +  +L   G  P++++Y  +I GL   G 
Sbjct: 372 MVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGK 431

Query: 457 IEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
            E                  A+ELL +M  + +KPD IT + +   L+++   HE +   
Sbjct: 432 AE-----------------LAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFF 474



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 143/339 (42%), Gaps = 28/339 (8%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  +  A+  FN M      P + ++N L+     +      I   ++L + G   D +S
Sbjct: 219 ESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVIS 278

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N+++   C      DA   L  +LRK   P VVT   LI  LC +G   +A  +     
Sbjct: 279 HNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMP 338

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
               +    PN   +  +I G C    +++       M  RG YPD   YN L+   C  
Sbjct: 339 ----KHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKD 394

Query: 245 VNWEDA---------KGNTSAALELHEEFVNG-----NGELGV-----ICH----PDVLS 281
              +DA         KG  S +L  +   ++G       EL V     +C+    PD+++
Sbjct: 395 GKVDDAVVILSQLSSKG-CSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLIT 453

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
             S++  L ++  V +A + F  +K  GI P+  +Y+S++ G C   +   A    V + 
Sbjct: 454 CTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMV 513

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           + GC P  +SY TLI   +     EEA  L  E+ S G+
Sbjct: 514 ANGCKPTEASYTTLIKGITYEGLAEEASKLSNELYSRGL 552



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 48/235 (20%)

Query: 284 SIINSLCKDVLVDKAKE--LFLD-MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
           S I+ LC+ +   + +E   FL+ M ++G IPDVV  ++LI  +C +GR  +A ++   +
Sbjct: 71  SEIHHLCRLIRNGELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGIL 130

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSL----------------------------- 371
           E  G + D +SYN LIN+Y K  ++EEAL +                             
Sbjct: 131 EESGAVIDANSYNVLINAYCKSGEIEEALRVLDHTSVAPNAATYDAVLCSLCDRGKLKQA 190

Query: 372 ------------YGEMISMGVRPDNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDG 415
                       Y ++++  V  D +C    + +A +LF  +     + D+  +N L+ G
Sbjct: 191 MQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKG 250

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            CK  RL  A    KKLP YG + +V+++ +++  LC  G    A  LL  M  K
Sbjct: 251 FCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRK 305



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 118/280 (42%), Gaps = 17/280 (6%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DA+     M+     P + +FN L+  L  K      + + E +   G  P+  S N L+
Sbjct: 294 DAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLI 353

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
             FC   G+  A   L  ++ +   PD+VT   L+  LC  GK  +A  + ++  +  C 
Sbjct: 354 QGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCS 413

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
           P++I     Y ++IDGL K G       L  +M  +G+ PD     S++           
Sbjct: 414 PSLIS----YNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVV----------- 458

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
             G  S   ++HE     +   G    P+   Y SI+  LCK      A +  +DM + G
Sbjct: 459 --GGLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVANG 516

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
             P    Y++LI G    G  ++A KL   + S G +  +
Sbjct: 517 CKPTEASYTTLIKGITYEGLAEEASKLSNELYSRGLVKKS 556


>gi|357499997|ref|XP_003620287.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|357500057|ref|XP_003620317.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495302|gb|AES76505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495332|gb|AES76535.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 291

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/311 (30%), Positives = 159/311 (51%), Gaps = 53/311 (17%)

Query: 69  NDALCFFNYMIHMQ-PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +D +  FN ++H Q PTP +  F  +LG+L    +Y   + L +++   G + + V+L+I
Sbjct: 29  HDLVSSFNRLLHQQNPTPSIFQFGKILGSLVKINHYSTVVSLHQQMELNGFVSNLVTLSI 88

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N F ++     +F  L +I +K + PD +TL  LI+GLC++G+  +A     K  A  
Sbjct: 89  LINSFSQLGQNPLSFSVLAKIFKKGYDPDAITLTSLIKGLCLKGQIHQALHFHDKLAALG 148

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            R N +     Y ++I+GLCK                                       
Sbjct: 149 FRFNHV----SYGTLINGLCK--------------------------------------- 165

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               G T AAL+L    V+G      +  PDV+ Y  II+S+CKD LV++A +L+ +M S
Sbjct: 166 ---VGQTRAALQLLRR-VDGK-----LVQPDVVMYTMIIDSMCKDKLVNEAFDLYSEMVS 216

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           +GI PDVV YS+LI G+C++G+++D+  LF  + SE   P+  ++N LI+++ +I  +  
Sbjct: 217 KGISPDVVTYSALISGFCILGKLNDSIGLFHKMISEKINPNMYTFNILIDAFVEIIFINP 276

Query: 368 ALSLYGEMISM 378
             S   E I +
Sbjct: 277 YFSFKDEKIYL 287



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 39/192 (20%)

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           +G  PD +  +SLI G CL G+I  A      + + G   +  SY TLIN   K+ +   
Sbjct: 112 KGYDPDAITLTSLIKGLCLKGQIHQALHFHDKLAALGFRFNHVSYGTLINGLCKVGQTRA 171

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           AL L   +    V+PD                      + ++  ++D +CK   +  A++
Sbjct: 172 ALQLLRRVDGKLVQPD----------------------VVMYTMIIDSMCKDKLVNEAFD 209

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKR 487
           L+ ++   G  P+VVTY+ +I G CI G +                   +I L HKM   
Sbjct: 210 LYSEMVSKGISPDVVTYSALISGFCILGKLN-----------------DSIGLFHKMISE 252

Query: 488 YVKPDEITVSIL 499
            + P+  T +IL
Sbjct: 253 KINPNMYTFNIL 264



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 81/159 (50%), Gaps = 13/159 (8%)

Query: 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCS 284
           +G  PDA    SLI+  C        KG    AL  H++       LG     + +SY +
Sbjct: 112 KGYDPDAITLTSLIKGLCL-------KGQIHQALHFHDKL----AALGF--RFNHVSYGT 158

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           +IN LCK      A +L   +  + + PDVV+Y+ +ID  C    +++A  L+  + S+G
Sbjct: 159 LINGLCKVGQTRAALQLLRRVDGKLVQPDVVMYTMIIDSMCKDKLVNEAFDLYSEMVSKG 218

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
             PD  +Y+ LI+ +  + K+ +++ L+ +MIS  + P+
Sbjct: 219 ISPDVVTYSALISGFCILGKLNDSIGLFHKMISEKINPN 257



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/211 (19%), Positives = 85/211 (40%), Gaps = 39/211 (18%)

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           P +  +  ++     +        L   +E  G + +  + + LINS+S++ +   + S+
Sbjct: 46  PSIFQFGKILGSLVKINHYSTVVSLHQQMELNGFVSNLVTLSILINSFSQLGQNPLSFSV 105

Query: 372 YGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
             ++   G  PD                    + LT    L+ GLC   ++  A     K
Sbjct: 106 LAKIFKKGYDPD-------------------AITLT---SLIKGLCLKGQIHQALHFHDK 143

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKP 491
           L   G   N V+Y  +I GLC                 K+ +   A++LL ++  + V+P
Sbjct: 144 LAALGFRFNHVSYGTLINGLC-----------------KVGQTRAALQLLRRVDGKLVQP 186

Query: 492 DEITVSILEELLNKDENCHECMNLLPSFLSR 522
           D +  +++ + + KD+  +E  +L    +S+
Sbjct: 187 DVVMYTMIIDSMCKDKLVNEAFDLYSEMVSK 217


>gi|255572426|ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533489|gb|EEF35232.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 874

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 176/378 (46%), Gaps = 53/378 (14%)

Query: 93  LLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKV 152
           LLG +   K    +I L E L  IG+ PD  S NI+M+  CK   +SDA + +G ++R  
Sbjct: 333 LLGLIRNGKLLEAWIVLKEMLG-IGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNG 391

Query: 153 FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP-NVICYASIIDGLCKDGF 211
             PD VT   L+ G C +GK  EA+ L  + ++ +C PN    NV+ ++     L K+G 
Sbjct: 392 ILPDTVTYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHS-----LWKEGR 446

Query: 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL-HEEFVNGNGE 270
           +++   L   M  +G   D    N +I   C         G    A+E+ +  + +G+  
Sbjct: 447 ISEAENLLQKMNEKGYGVDTVTCNIIINALC-------NNGQLDKAIEIVNGMWTHGSAA 499

Query: 271 LGVI----------------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
           LG +                C PD+++Y +II+ LCK   +D AK+ F++M S+G+ PD 
Sbjct: 500 LGNLGNSFIGLVDDTISGKKCTPDLVTYSTIISGLCKAGRLDDAKKKFIEMMSKGLQPDS 559

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
            +Y + I  +C  G+I  A ++   +E  GC     +YN+LI       ++ E   L  E
Sbjct: 560 AIYDTFIHSFCREGKISSAFQVLKDMEKRGCNKTLQTYNSLILGLGSKNQIFELYGLIDE 619

Query: 375 MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
           M   GV P                      D+  +N +++ LC+  R+  A  +  ++ +
Sbjct: 620 MREKGVSP----------------------DVCTYNHMLNCLCEGGRINDAPSVLDEMLQ 657

Query: 435 YGPEPNVVTYTVMICGLC 452
            G  PN+ ++ ++I   C
Sbjct: 658 KGISPNISSFRILIKAFC 675



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 115/408 (28%), Positives = 180/408 (44%), Gaps = 59/408 (14%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           ++ T+G+LP+ V  N L++ FCK     DA   + ++      P V T    I  LC  G
Sbjct: 207 QMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNSRISALCGSG 266

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
           K  EAS +F      +      PNVI Y  ++ G CK+G + + + L   MK    + + 
Sbjct: 267 KILEASRIFRDMQIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFINL 326

Query: 232 FVYN----SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIIN 287
             YN     LIR            G    A  + +E       LG+   PD+ SY  +++
Sbjct: 327 ESYNIWLLGLIR-----------NGKLLEAWIVLKEM------LGIGIEPDIYSYNIVMD 369

Query: 288 SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
            LCK+ ++  A+ L   M   GI+PD V YS+L+ GYC  G++ +A  L   + S  C P
Sbjct: 370 GLCKNGMLSDARMLMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEANNLLHEMISNNCSP 429

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELF 394
           +T + N L++S  K  ++ EA +L  +M   G   D             N  + +A E+ 
Sbjct: 430 NTYTCNVLLHSLWKEGRISEAENLLQKMNEKGYGVDTVTCNIIINALCNNGQLDKAIEIV 489

Query: 395 R-----------------------TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
                                   T+   K   DL  ++ ++ GLCK+ RL  A + F +
Sbjct: 490 NGMWTHGSAALGNLGNSFIGLVDDTISGKKCTPDLVTYSTIISGLCKAGRLDDAKKKFIE 549

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIE 479
           +   G +P+   Y   I   C EG I  A+ +L DME+  R C K ++
Sbjct: 550 MMSKGLQPDSAIYDTFIHSFCREGKISSAFQVLKDMEK--RGCNKTLQ 595



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 105/440 (23%), Positives = 197/440 (44%), Gaps = 44/440 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+DA      MI     P   ++++LL     K        L   + +    P+  + N+
Sbjct: 377 LSDARMLMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNV 436

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA----SGLFTK- 182
           L++   K   +S+A   L ++  K +  D VT   +I  LC  G+  +A    +G++T  
Sbjct: 437 LLHSLWKEGRISEAENLLQKMNEKGYGVDTVTCNIIINALCNNGQLDKAIEIVNGMWTHG 496

Query: 183 ----------FVAF----DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
                     F+             P+++ Y++II GLCK G ++  +  F++M  +G+ 
Sbjct: 497 SAALGNLGNSFIGLVDDTISGKKCTPDLVTYSTIISGLCKAGRLDDAKKKFIEMMSKGLQ 556

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           PD+ +Y++ I  +C        +G  S+A ++ ++           C+  + +Y S+I  
Sbjct: 557 PDSAIYDTFIHSFC-------REGKISSAFQVLKDMEKRG------CNKTLQTYNSLILG 603

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           L     + +   L  +M+ +G+ PDV  Y+ +++  C  GRI+DA  +   +  +G  P+
Sbjct: 604 LGSKNQIFELYGLIDEMREKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQKGISPN 663

Query: 349 TSSYNTLINSYSKI-------EKVEEALSLYGEMISMGVRPDNSCIL-----EAAELFRT 396
            SS+  LI ++ K        E  E AL++ G   ++     N  ++     EA ELF T
Sbjct: 664 ISSFRILIKAFCKACDFKASHEVFEIALNVCGHKEALYTLMFNELLVGGKVAEAKELFET 723

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
             +  F++   ++  L+D LCK  +L +A ++  +L   G + +  ++  +I G    G 
Sbjct: 724 ALDRSFDIGNFLYKDLIDRLCKDEKLEAASDVLHRLIDKGYQFDPASFMPVIDGFGKMGN 783

Query: 457 IEKAYDLLPDMEEKIRECLK 476
              A +L   M E   E  K
Sbjct: 784 KHVADELAERMMEMASESNK 803



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 167/380 (43%), Gaps = 53/380 (13%)

Query: 177 SGLFTKFVAF-----DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
           SG F K ++         P   P++  Y  ++    ++  V  V  L+ DM    + P+A
Sbjct: 88  SGFFNKAISHFKSLRSNFPEKQPSIYLYNVLLKSCIRENRVELVSWLYKDMVLARVSPEA 147

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
           + +N LI + C + + EDA+       EL ++           C P+  ++  ++   C+
Sbjct: 148 YTFNLLIGLLCDSGHLEDAR-------ELFDKMPARG------CEPNEFTFGILVRGYCR 194

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
             L  K  EL   M++ GI+P+ V+Y++LI  +C  G+  DA KL   +  +G +P   +
Sbjct: 195 AGLASKGLELLGQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVET 254

Query: 352 YNTLINSYSKIEKVEEALSLYGEMI---SMGVRPDN--------------SCILEAAELF 394
           +N+ I++     K+ EA  ++ +M     +G+   N                + EA  L 
Sbjct: 255 FNSRISALCGSGKILEASRIFRDMQIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLV 314

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
            T+      ++L  +N  + GL ++ +L  AW + K++   G EP++ +Y +++ GLC  
Sbjct: 315 DTMKRNANFINLESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKN 374

Query: 455 GGIEKAY---------DLLPDMEE---------KIRECLKAIELLHKMAKRYVKPDEITV 496
           G +  A           +LPD               +  +A  LLH+M      P+  T 
Sbjct: 375 GMLSDARMLMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTC 434

Query: 497 SILEELLNKDENCHECMNLL 516
           ++L   L K+    E  NLL
Sbjct: 435 NVLLHSLWKEGRISEAENLL 454


>gi|18420848|ref|NP_568460.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75154065|sp|Q8L6Y3.1|PP396_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g24830
 gi|22655280|gb|AAM98230.1| putative protein [Arabidopsis thaliana]
 gi|30725398|gb|AAP37721.1| At5g24830 [Arabidopsis thaliana]
 gi|332005984|gb|AED93367.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 593

 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 109/415 (26%), Positives = 200/415 (48%), Gaps = 26/415 (6%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L+ AL     MI+    P + + N LL  L    Y      L   +  +G  P+ VS N
Sbjct: 136 KLDAALWLRKKMIYSGVIPGLITHNHLLNGLCKAGYIEKADGLVREMREMGPSPNCVSYN 195

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+   C +  V  A      + +    P+ VT   ++  LC +G     +    + +  
Sbjct: 196 TLIKGLCSVNNVDKALYLFNTMNKYGIRPNRVTCNIIVHALCQKGVIGNNNKKLLEEILD 255

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             + N   +++    ++D   K+G V +   ++ +M  + +  D+ VYN +IR  C    
Sbjct: 256 SSQANAPLDIVICTILMDSCFKNGNVVQALEVWKEMSQKNVPADSVVYNVIIRGLC---- 311

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
              + GN  AA     + V    + GV  +PDV +Y ++I++LCK+   D+A +L   M+
Sbjct: 312 ---SSGNMVAAYGFMCDMV----KRGV--NPDVFTYNTLISALCKEGKFDEACDLHGTMQ 362

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           + G+ PD + Y  +I G C+ G ++ A +  +S+     +P+   +N +I+ Y +     
Sbjct: 363 NGGVAPDQISYKVIIQGLCIHGDVNRANEFLLSMLKSSLLPEVLLWNVVIDGYGRYGDTS 422

Query: 367 EALSLYGEMISMGVRP----DNSCI---------LEAAELFRTLHNTKFELDLTVFNCLV 413
            ALS+   M+S GV+P    +N+ I         ++A  +   + +TK   D T +N L+
Sbjct: 423 SALSVLNLMLSYGVKPNVYTNNALIHGYVKGGRLIDAWWVKNEMRSTKIHPDTTTYNLLL 482

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
              C    LR A++L+ ++ R G +P+++TYT ++ GLC +G ++KA  LL  ++
Sbjct: 483 GAACTLGHLRLAFQLYDEMLRRGCQPDIITYTELVRGLCWKGRLKKAESLLSRIQ 537



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 182/404 (45%), Gaps = 38/404 (9%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G +E  D L     M  M P+P   S+N+L+  L         + L   +N  G+ P+
Sbjct: 168 KAGYIEKADGL--VREMREMGPSPNCVSYNTLIKGLCSVNNVDKALYLFNTMNKYGIRPN 225

Query: 122 FVSLNILMNCFCK--MIGVSDAFVALGRIL--RKVFSP-DVVTLGCLIRGLCMQGKFTEA 176
            V+ NI+++  C+  +IG ++  + L  IL   +  +P D+V    L+      G   +A
Sbjct: 226 RVTCNIIVHALCQKGVIGNNNKKL-LEEILDSSQANAPLDIVICTILMDSCFKNGNVVQA 284

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             ++ +      + NV  + + Y  II GLC  G +        DM  RG+ PD F YN+
Sbjct: 285 LEVWKEM----SQKNVPADSVVYNVIIRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNT 340

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI   C        +G    A +LH    NG    GV   PD +SY  II  LC    V+
Sbjct: 341 LISALC-------KEGKFDEACDLHGTMQNG----GVA--PDQISYKVIIQGLCIHGDVN 387

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A E  L M    ++P+V++++ +IDGY   G    A  +   + S G  P+  + N LI
Sbjct: 388 RANEFLLSMLKSSLLPEVLLWNVVIDGYGRYGDTSSALSVLNLMLSYGVKPNVYTNNALI 447

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNS---------CILE----AAELFRTLHNTKFE 403
           + Y K  ++ +A  +  EM S  + PD +         C L     A +L+  +     +
Sbjct: 448 HGYVKGGRLIDAWWVKNEMRSTKIHPDTTTYNLLLGAACTLGHLRLAFQLYDEMLRRGCQ 507

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
            D+  +  LV GLC   RL+ A  L  ++   G   + V + ++
Sbjct: 508 PDIITYTELVRGLCWKGRLKKAESLLSRIQATGITIDHVPFLIL 551



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 135/302 (44%), Gaps = 43/302 (14%)

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           ++R LC+QGK   A  L  K +       VIP +I +  +++GLCK G++ K   L  +M
Sbjct: 127 IMRDLCLQGKLDAALWLRKKMIY----SGVIPGLITHNHLLNGLCKAGYIEKADGLVREM 182

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
           +  G  P+   YN+LI+  C +VN      N   AL L     N   + G+   P+ ++ 
Sbjct: 183 REMGPSPNCVSYNTLIKGLC-SVN------NVDKALYL----FNTMNKYGI--RPNRVTC 229

Query: 283 CSIINSLC-KDVLVDKAKELF---LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
             I+++LC K V+ +  K+L    LD        D+V+ + L+D     G +  A +++ 
Sbjct: 230 NIIVHALCQKGVIGNNNKKLLEEILDSSQANAPLDIVICTILMDSCFKNGNVVQALEVWK 289

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398
            +  +    D+  YN +I        +  A     +M+  GV PD               
Sbjct: 290 EMSQKNVPADSVVYNVIIRGLCSSGNMVAAYGFMCDMVKRGVNPD--------------- 334

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
                  +  +N L+  LCK  +   A +L   +   G  P+ ++Y V+I GLCI G + 
Sbjct: 335 -------VFTYNTLISALCKEGKFDEACDLHGTMQNGGVAPDQISYKVIIQGLCIHGDVN 387

Query: 459 KA 460
           +A
Sbjct: 388 RA 389



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 122/290 (42%), Gaps = 40/290 (13%)

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           D V  N+++   C    +  A+  +  ++++  +PDV T   LI  LC +GKF EA  L 
Sbjct: 299 DSVVYNVIIRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLISALCKEGKFDEACDLH 358

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
                      V P+ I Y  II GLC  G VN+     L M    + P+  ++N +I  
Sbjct: 359 GTMQ----NGGVAPDQISYKVIIQGLCIHGDVNRANEFLLSMLKSSLLPEVLLWNVVIDG 414

Query: 241 YCCAVNWEDAKGNTSAALE-------------------LHEEFVNG----------NGEL 271
           Y          G+TS+AL                    L   +V G          N   
Sbjct: 415 Y-------GRYGDTSSALSVLNLMLSYGVKPNVYTNNALIHGYVKGGRLIDAWWVKNEMR 467

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
               HPD  +Y  ++ + C    +  A +L+ +M  RG  PD++ Y+ L+ G C  GR+ 
Sbjct: 468 STKIHPDTTTYNLLLGAACTLGHLRLAFQLYDEMLRRGCQPDIITYTELVRGLCWKGRLK 527

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
            A  L   I++ G   D   +  L   Y+++++  EA  +Y + ++   R
Sbjct: 528 KAESLLSRIQATGITIDHVPFLILAKKYTRLQRPGEAYLVYKKWLATRNR 577



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 122/253 (48%), Gaps = 30/253 (11%)

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
           +++S++R  C        +G   AAL L ++ +      GVI  P ++++  ++N LCK 
Sbjct: 123 IHSSIMRDLC-------LQGKLDAALWLRKKMIYS----GVI--PGLITHNHLLNGLCKA 169

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             ++KA  L  +M+  G  P+ V Y++LI G C +  +D A  LF ++   G  P+  + 
Sbjct: 170 GYIEKADGLVREMREMGPSPNCVSYNTLIKGLCSVNNVDKALYLFNTMNKYGIRPNRVTC 229

Query: 353 NTLI-----------NSYSKIEKVEEA------LSLYGEMISMGVRPDNSCILEAAELFR 395
           N ++           N+   +E++ ++      L +    I M     N  +++A E+++
Sbjct: 230 NIIVHALCQKGVIGNNNKKLLEEILDSSQANAPLDIVICTILMDSCFKNGNVVQALEVWK 289

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            +       D  V+N ++ GLC S  + +A+     + + G  P+V TY  +I  LC EG
Sbjct: 290 EMSQKNVPADSVVYNVIIRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLISALCKEG 349

Query: 456 GIEKAYDLLPDME 468
             ++A DL   M+
Sbjct: 350 KFDEACDLHGTMQ 362



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 72/161 (44%), Gaps = 1/161 (0%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           + + AL   N M+     P + + N+L+         ++   +   + +  + PD  + N
Sbjct: 420 DTSSALSVLNLMLSYGVKPNVYTNNALIHGYVKGGRLIDAWWVKNEMRSTKIHPDTTTYN 479

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +L+   C +  +  AF     +LR+   PD++T   L+RGLC +G+  +A  L ++  A 
Sbjct: 480 LLLGAACTLGHLRLAFQLYDEMLRRGCQPDIITYTELVRGLCWKGRLKKAESLLSRIQAT 539

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI 227
               + +P +I  A     L + G    V   +L  + RG+
Sbjct: 540 GITIDHVPFLI-LAKKYTRLQRPGEAYLVYKKWLATRNRGV 579


>gi|26449752|dbj|BAC41999.1| unknown protein [Arabidopsis thaliana]
          Length = 593

 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 109/415 (26%), Positives = 200/415 (48%), Gaps = 26/415 (6%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L+ AL     MI+    P + + N LL  L    Y      L   +  +G  P+ VS N
Sbjct: 136 KLDAALWLRKKMIYSGVIPGLITHNHLLNGLCKAGYIEKADGLVREMREMGPSPNCVSYN 195

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+   C +  V  A      + +    P+ VT   ++  LC +G     +    + +  
Sbjct: 196 TLIKGLCSVNNVDKALYLFNTMNKYGIRPNRVTCNIIVHALCQKGVIGNNNKKLLEEILD 255

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             + N   +++    ++D   K+G V +   ++ +M  + +  D+ VYN +IR  C    
Sbjct: 256 SSQANAPLDIVICTILMDSCFKNGNVVQALEVWKEMSQKNVPADSVVYNVIIRGLC---- 311

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
              + GN  AA     + V    + GV  +PDV +Y ++I++LCK+   D+A +L   M+
Sbjct: 312 ---SSGNMVAAYGFMCDMV----KRGV--NPDVFTYNTLISALCKEGKFDEACDLHGTMQ 362

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           + G+ PD + Y  +I G C+ G ++ A +  +S+     +P+   +N +I+ Y +     
Sbjct: 363 NGGVAPDQISYKVIIQGLCIHGDVNRANEFLLSMLKSSLLPEVLLWNVVIDGYGRYGDTS 422

Query: 367 EALSLYGEMISMGVRP----DNSCI---------LEAAELFRTLHNTKFELDLTVFNCLV 413
            ALS+   M+S GV+P    +N+ I         ++A  +   + +TK   D T +N L+
Sbjct: 423 SALSVLNLMLSYGVKPNVYTNNALIHGYVKGGRLIDAWWVKNEMRSTKIHPDTTTYNLLL 482

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
              C    LR A++L+ ++ R G +P+++TYT ++ GLC +G ++KA  LL  ++
Sbjct: 483 GAACTLGHLRLAFQLYDEMLRRGCQPDIITYTELVRGLCWKGRLKKAESLLSRIQ 537



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 182/404 (45%), Gaps = 38/404 (9%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G +E  D L     M  M P+P   S+N+L+  L         + L   +N  G+ P+
Sbjct: 168 KAGYIEKADGL--VREMREMGPSPNCVSYNTLIKGLCSVNNVDKALYLFNTMNKYGIRPN 225

Query: 122 FVSLNILMNCFCK--MIGVSDAFVALGRIL--RKVFSP-DVVTLGCLIRGLCMQGKFTEA 176
            V+ NI+++  C+  +IG ++  + L  IL   +  +P D+V    L+      G   +A
Sbjct: 226 RVTCNIIVHALCQKGVIGNNNKKL-LEEILDSSQANAPLDIVICTILMDSCFKNGNVVQA 284

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             ++ +      + NV  + + Y  II GLC  G +        DM  RG+ PD F YN+
Sbjct: 285 LEVWKEM----SQKNVPADSVVYNVIIRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNT 340

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI   C        +G    A +LH    NG    GV   PD +SY  II  LC    V+
Sbjct: 341 LISALC-------KEGKFDEACDLHGTMQNG----GVA--PDQISYKVIIQGLCIHGDVN 387

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A E  L M    ++P+V++++ +IDGY   G    A  +   + S G  P+  + N LI
Sbjct: 388 RANEFLLSMLKSSLLPEVLLWNVVIDGYGRYGDTSSALSVLNLMLSYGVKPNVYTNNALI 447

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNS---------CILE----AAELFRTLHNTKFE 403
           + Y K  ++ +A  +  EM S  + PD +         C L     A +L+  +     +
Sbjct: 448 HGYVKGGRLIDAWWVKNEMRSTKIHPDTTTYNLLLGAACTLGHLRLAFQLYDEMLRRGCQ 507

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
            D+  +  LV GLC   RL+ A  L  ++   G   + V + ++
Sbjct: 508 PDIITYTELVRGLCWKGRLKKAESLLSRIQATGITIDHVPFLIL 551



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 135/302 (44%), Gaps = 43/302 (14%)

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           ++R LC+QGK   A  L  K +       VIP +I +  +++GLCK G++ K   L  +M
Sbjct: 127 IMRDLCLQGKLDAALWLRKKMIY----SGVIPGLITHNHLLNGLCKAGYIEKADGLVREM 182

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
           +  G  P+   YN+LI+  C +VN      N   AL L     N   + G+   P+ ++ 
Sbjct: 183 REMGPSPNCVSYNTLIKGLC-SVN------NVDKALYL----FNTMNKYGI--RPNRVTC 229

Query: 283 CSIINSLC-KDVLVDKAKELF---LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
             I+++LC K V+ +  K+L    LD        D+V+ + L+D     G +  A +++ 
Sbjct: 230 NIIVHALCQKGVIGNNNKKLLEEILDSSQANAPLDIVICTILMDSCFKNGNVVQALEVWK 289

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398
            +  +    D+  YN +I        +  A     +M+  GV PD               
Sbjct: 290 EMSQKNVPADSVVYNVIIRGLCSSGNMVAAYGFMCDMVKRGVNPD--------------- 334

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
                  +  +N L+  LCK  +   A +L   +   G  P+ ++Y V+I GLCI G + 
Sbjct: 335 -------VFTYNTLISALCKEGKFDEACDLHGTMQNGGVAPDQISYKVIIQGLCIHGDVN 387

Query: 459 KA 460
           +A
Sbjct: 388 RA 389



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 122/290 (42%), Gaps = 40/290 (13%)

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           D V  N+++   C    +  A+  +  ++++  +PDV T   LI  LC +GKF EA  L 
Sbjct: 299 DSVVYNVIIRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLISALCKEGKFDEACDLH 358

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
                      V P+ I Y  II GLC  G VN+     L M    + P+  ++N +I  
Sbjct: 359 GTMQ----NGGVAPDQISYKVIIQGLCIHGDVNRANEFLLSMLKSSLLPEVLLWNVVIDG 414

Query: 241 YCCAVNWEDAKGNTSAALE-------------------LHEEFVNG----------NGEL 271
           Y          G+TS+AL                    L   +V G          N   
Sbjct: 415 Y-------GRYGDTSSALSVLNLMLSYGVKPNVYTNNALIHGYVKGGRLIDAWWVKNEMR 467

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
               HPD  +Y  ++ + C    +  A +L+ +M  RG  PD++ Y+ L+ G C  GR+ 
Sbjct: 468 STKIHPDTTTYNLLLGAACTLGHLRLAFQLYDEMLRRGCQPDIITYTELVRGLCWKGRLK 527

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
            A  L   I++ G   D   +  L   Y+++++  EA  +Y + ++   R
Sbjct: 528 KAESLLSRIQATGITIDHVPFLILAKKYTRLQRPGEAYLVYKKWLATRNR 577



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 122/253 (48%), Gaps = 30/253 (11%)

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
           +++S++R  C        +G   AAL L ++ +      GVI  P ++++  ++N LCK 
Sbjct: 123 IHSSIMRDLC-------LQGKLDAALWLRKKMIYS----GVI--PGLITHNHLLNGLCKA 169

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             ++KA  L  +M+  G  P+ V Y++LI G C +  +D A  LF ++   G  P+  + 
Sbjct: 170 GYIEKADGLVREMREMGPSPNCVSYNTLIKGLCSVNNVDKALYLFNTMNKYGIRPNRVTC 229

Query: 353 NTLI-----------NSYSKIEKVEEA------LSLYGEMISMGVRPDNSCILEAAELFR 395
           N ++           N+   +E++ ++      L +    I M     N  +++A E+++
Sbjct: 230 NIIVHALCQKGVIGNNNKKLLEEILDSSQANAPLDIVICTILMDSCFKNGNVVQALEVWK 289

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            +       D  V+N ++ GLC S  + +A+     + + G  P+V TY  +I  LC EG
Sbjct: 290 EMSQKNVPADSVVYNVIIRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLISALCKEG 349

Query: 456 GIEKAYDLLPDME 468
             ++A DL   M+
Sbjct: 350 KFDEACDLHGTMQ 362



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 72/161 (44%), Gaps = 1/161 (0%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           + + AL   N M+     P + + N+L+         ++   +   + +  + PD  + N
Sbjct: 420 DTSSALSVLNLMLSYGVKPNVYTNNALIHGYVKGGRLIDAWWVKNEMRSTKIHPDTTTYN 479

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +L+   C +  +  AF     +LR+   PD++T   L+RGLC +G+  +A  L ++  A 
Sbjct: 480 LLLGAACTLGHLRLAFQLYDEMLRRGCQPDIITYTELVRGLCWKGRLKKAESLLSRIQAT 539

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI 227
               + +P +I  A     L + G    V   +L  + RG+
Sbjct: 540 GITIDHVPFLI-LAKKYTRLQRPGEAYLVYKKWLATRNRGV 579


>gi|356522596|ref|XP_003529932.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Glycine max]
          Length = 827

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 174/366 (47%), Gaps = 40/366 (10%)

Query: 104 VNFIC-LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGC 162
           VN  C L +++   G+ P  VS N ++   CK   + DA   +  I+     P+ +T   
Sbjct: 447 VNEACNLWDKMIGKGITPSLVSYNHMILGHCKKGCMDDAHEVMNGIIESGLKPNAITYTI 506

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           L+ G   +G    A  +F + VA      ++P    + SII+GLCK G V++ R      
Sbjct: 507 LMEGSFKKGDCEHAFNMFDQMVA----AGIVPTDYTFNSIINGLCKVGRVSEARDKLNTF 562

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
             +   P +  YN +I  Y         +G   +A  ++ E             P+V++Y
Sbjct: 563 IKQSFIPTSMTYNCIIDGYV-------KEGAIDSAESVYREMCRSE------ISPNVITY 609

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
            S+IN  CK   +D A ++  DMK +G+  D+ VY++LI G+C M  +++A K F  +  
Sbjct: 610 TSLINGFCKSNKMDLALKMHDDMKRKGLELDITVYATLIAGFCKMQDMENACKFFSKLLE 669

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF 402
            G  P+T  YN +I++Y  +  +E AL+L+ EMI                      N K 
Sbjct: 670 VGLTPNTIVYNIMISAYRNLNNMEAALNLHKEMI----------------------NNKI 707

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
             DL ++  L+DGL K  +L  A +L+ ++   G  P++  Y V+I GLC  G +E A  
Sbjct: 708 PCDLKIYTSLIDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNVLINGLCNHGQLENAGK 767

Query: 463 LLPDME 468
           +L +M+
Sbjct: 768 ILKEMD 773



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 150/303 (49%), Gaps = 38/303 (12%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           +++   G++P   + N ++N  CK+  VS+A   L   +++ F P  +T  C+I G   +
Sbjct: 525 DQMVAAGIVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVKE 584

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G    A  ++ +     CR  + PNVI Y S+I+G CK   ++    +  DMK +G+  D
Sbjct: 585 GAIDSAESVYREM----CRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELD 640

Query: 231 AFVYNSLIRVYCCAVNWEDA----------------------------KGNTSAALELHE 262
             VY +LI  +C   + E+A                              N  AAL LH+
Sbjct: 641 ITVYATLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAALNLHK 700

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
           E +N      + C  D+  Y S+I+ L K+  +  A +L+ +M  RGI+PD+ +Y+ LI+
Sbjct: 701 EMINNK----IPC--DLKIYTSLIDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNVLIN 754

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
           G C  G++++A K+   ++     P    YNTLI  + K   ++EA  L+ EM+  G+ P
Sbjct: 755 GLCNHGQLENAGKILKEMDGNNITPTVLLYNTLIAGHFKEGNLQEAFRLHDEMLDKGLVP 814

Query: 383 DNS 385
           D++
Sbjct: 815 DDT 817



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 151/328 (46%), Gaps = 31/328 (9%)

Query: 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV 215
           +V     LI+G C++G    A  LF + V       V PNV  ++ +I+   K G V K 
Sbjct: 326 NVAVATSLIKGYCVRGDVNSALRLFDEVVEV----GVTPNVAIFSVLIEWCSKIGNVEKA 381

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
             L+  MK  G+ P  F+ N L++ +                LE     ++G  E G+  
Sbjct: 382 NELYTRMKCMGLQPTVFILNFLLKGF-----------RKQNLLENAYLLLDGAVENGI-- 428

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
              V++Y  ++  LC+   V++A  L+  M  +GI P +V Y+ +I G+C  G +DDA +
Sbjct: 429 -ASVVTYNIVLLWLCELGKVNEACNLWDKMIGKGITPSLVSYNHMILGHCKKGCMDDAHE 487

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCI---- 387
           +   I   G  P+  +Y  L+    K    E A +++ +M++ G+ P     NS I    
Sbjct: 488 VMNGIIESGLKPNAITYTILMEGSFKKGDCEHAFNMFDQMVAAGIVPTDYTFNSIINGLC 547

Query: 388 -----LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
                 EA +   T     F      +NC++DG  K   + SA  +++++ R    PNV+
Sbjct: 548 KVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVKEGAIDSAESVYREMCRSEISPNVI 607

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           TYT +I G C    ++ A  +  DM+ K
Sbjct: 608 TYTSLINGFCKSNKMDLALKMHDDMKRK 635



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 100/417 (23%), Positives = 171/417 (41%), Gaps = 81/417 (19%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G++P    +N+L+    +   V DA      +  +    D  TL  L+R     GKF EA
Sbjct: 182 GVVPWVPFVNVLLTAMIRRNMVEDAHRLFDEMAERRIYGDCYTLQVLMRACLKGGKFVEA 241

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
              F +                                         GRG+  DA  Y+ 
Sbjct: 242 ERYFGQ---------------------------------------AAGRGLKLDAASYSI 262

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           +I+  C             + L+L  + V G+ ELG +  P   +Y ++I +  +     
Sbjct: 263 VIQAVC-----------RGSDLDLASKLVEGDEELGWV--PSEGTYAAVIGACVRLGNFG 309

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A  L  +M    +  +V V +SLI GYC+ G ++ A +LF  +   G  P+ + ++ LI
Sbjct: 310 EALRLKDEMVDSRVPVNVAVATSLIKGYCVRGDVNSALRLFDEVVEVGVTPNVAIFSVLI 369

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT---LHNTKFELD-------- 405
              SKI  VE+A  LY  M  MG++P    +    + FR    L N    LD        
Sbjct: 370 EWCSKIGNVEKANELYTRMKCMGLQPTVFILNFLLKGFRKQNLLENAYLLLDGAVENGIA 429

Query: 406 -LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            +  +N ++  LC+  ++  A  L+ K+   G  P++V+Y  MI G C +G ++ A+   
Sbjct: 430 SVVTYNIVLLWLCELGKVNEACNLWDKMIGKGITPSLVSYNHMILGHCKKGCMDDAH--- 486

Query: 465 PDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
                         E+++ + +  +KP+ IT +IL E   K  +C    N+    ++
Sbjct: 487 --------------EVMNGIIESGLKPNAITYTILMEGSFKKGDCEHAFNMFDQMVA 529


>gi|356497651|ref|XP_003517673.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 827

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 128/456 (28%), Positives = 199/456 (43%), Gaps = 66/456 (14%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIGLLPDFVSL 125
           L +AL  F+   H+   P + + N LL  L  A +  +V  +   E L   G  P+  + 
Sbjct: 263 LENALDVFSNAKHVGLEPDIRTCNFLLKCLVEANRVEFVRRV--FEELKDRGPSPNIYTY 320

Query: 126 NILMNCFCKMIG----VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            I+MN +C  +G    +  A V LG+I R    P VVT    I GLC  G   EA+ +  
Sbjct: 321 TIMMNFYCSDVGCDAGMRQAAVILGKIYRSGEKPTVVTYSTYIHGLCKVGN-VEAALMLI 379

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           + + +  +P    N   +  +I G CK G V +   +  +MK  GI PD + Y+ LI  +
Sbjct: 380 RNLHYTNQP---LNSHSFNDVIYGFCKRGEVFEALQVLEEMKSSGILPDVYSYSILINAF 436

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C        KG+    L+L EE  +          P ++SY S+I+ LCK  ++  A ++
Sbjct: 437 C-------GKGDVMKCLDLMEEMEHSQ------IKPSIVSYTSLIHGLCKKNMLQNAVDI 483

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F  + +     D  VY +LIDG+C+ G +D A KL   +     +P   S  +LI  Y K
Sbjct: 484 FHSIGASSCKYDSTVYETLIDGFCMQGDMDSAIKLLEEMICNELVPTAFSCRSLIRGYYK 543

Query: 362 IEKVEEALSLYGEMISMGVRPDN-SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           +   ++AL ++  M+  G+ PD  +C                       N ++DG C++ 
Sbjct: 544 LGLFDQALEVFNAMLRDGIWPDTIAC-----------------------NYILDGSCRAG 580

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIEL 480
             + A  L +    +G   N  +Y  +I  LC EG  E+A +LLP               
Sbjct: 581 YFKEALTLLEDFQEHGFNLNPHSYNAIIYKLCKEGYPERALELLP--------------- 625

Query: 481 LHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
             +M KR V P  +  S L     K  N    +NL 
Sbjct: 626 --RMLKRNVLPSVVNYSTLISGFAKQSNFKRAVNLF 659



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 126/456 (27%), Positives = 189/456 (41%), Gaps = 59/456 (12%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K GEV   +AL     M      P + S++ L+ A  GK   +  + L E +    + P 
Sbjct: 403 KRGEV--FEALQVLEEMKSSGILPDVYSYSILINAFCGKGDVMKCLDLMEEMEHSQIKPS 460

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            VS   L++  CK   + +A      I       D      LI G CMQG    A  L  
Sbjct: 461 IVSYTSLIHGLCKKNMLQNAVDIFHSIGASSCKYDSTVYETLIDGFCMQGDMDSAIKLLE 520

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           + +       ++P      S+I G  K G  ++   +F  M   GI+PD    N ++   
Sbjct: 521 EMIC----NELVPTAFSCRSLIRGYYKLGLFDQALEVFNAMLRDGIWPDTIACNYILDGS 576

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C A       G    AL L E+F     E G   +P   SY +II  LCK+   ++A EL
Sbjct: 577 CRA-------GYFKEALTLLEDF----QEHGFNLNPH--SYNAIIYKLCKEGYPERALEL 623

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
              M  R ++P VV YS+LI G+        A  LF  +   G   + ++Y  L++ +S 
Sbjct: 624 LPRMLKRNVLPSVVNYSTLISGFAKQSNFKRAVNLFTRMVKVGITFNIATYTILMSIFSH 683

Query: 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
             K+ EA  ++ EM   G+     C                 LD   +  L+ G C +  
Sbjct: 684 SHKMHEAYGIFKEMKERGL-----C-----------------LDQISYTTLIVGFCNNRE 721

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA------------------YDL 463
           ++ AW LF+++ R G  PNV+TYT +I G C    I+ A                  Y +
Sbjct: 722 MKKAWALFEEMSREGCSPNVITYTCIIDGFCKSNRIDLATWVFDKMNRDSVIPDVVTYTV 781

Query: 464 LPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           L D   K     +A +L   M  + V PD+IT ++L
Sbjct: 782 LIDWYHKHGYFDQAHKLYDVMKDKGVLPDDITHNVL 817



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 101/411 (24%), Positives = 171/411 (41%), Gaps = 39/411 (9%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N+  G+ ++   L     M H Q  P + S+ SL+  L  K    N + +   +      
Sbjct: 434 NAFCGKGDVMKCLDLMEEMEHSQIKPSIVSYTSLIHGLCKKNMLQNAVDIFHSIGASSCK 493

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
            D      L++ FC    +  A   L  ++     P   +   LIRG    G F +A  +
Sbjct: 494 YDSTVYETLIDGFCMQGDMDSAIKLLEEMICNELVPTAFSCRSLIRGYYKLGLFDQALEV 553

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F   +    R  + P+ I    I+DG C+ G+  +   L  D +  G   +   YN++I 
Sbjct: 554 FNAML----RDGIWPDTIACNYILDGSCRAGYFKEALTLLEDFQEHGFNLNPHSYNAIIY 609

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C        +G    ALEL    +  N        P V++Y ++I+   K     +A 
Sbjct: 610 KLC-------KEGYPERALELLPRMLKRN------VLPSVVNYSTLISGFAKQSNFKRAV 656

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            LF  M   GI  ++  Y+ L+  +    ++ +A  +F  ++  G   D  SY TLI  +
Sbjct: 657 NLFTRMVKVGITFNIATYTILMSIFSHSHKMHEAYGIFKEMKERGLCLDQISYTTLIVGF 716

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
               ++++A +L+ EM   G  P                      ++  + C++DG CKS
Sbjct: 717 CNNREMKKAWALFEEMSREGCSP----------------------NVITYTCIIDGFCKS 754

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            R+  A  +F K+ R    P+VVTYTV+I      G  ++A+ L   M++K
Sbjct: 755 NRIDLATWVFDKMNRDSVIPDVVTYTVLIDWYHKHGYFDQAHKLYDVMKDK 805



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 85/200 (42%), Gaps = 35/200 (17%)

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDN-------SCILEA------AELFRTLH 398
           ++ LI+ ++    +E AL ++     +G+ PD         C++EA        +F  L 
Sbjct: 250 FDVLISVFASNSMLENALDVFSNAKHVGLEPDIRTCNFLLKCLVEANRVEFVRRVFEELK 309

Query: 399 NTKFELDLTVFNCLVDGLCKS----WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
           +     ++  +  +++  C        +R A  +  K+ R G +P VVTY+  I GLC  
Sbjct: 310 DRGPSPNIYTYTIMMNFYCSDVGCDAGMRQAAVILGKIYRSGEKPTVVTYSTYIHGLCKV 369

Query: 455 GGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITV 496
           G +E A  L+ ++                    K  E  +A+++L +M    + PD  + 
Sbjct: 370 GNVEAALMLIRNLHYTNQPLNSHSFNDVIYGFCKRGEVFEALQVLEEMKSSGILPDVYSY 429

Query: 497 SILEELLNKDENCHECMNLL 516
           SIL        +  +C++L+
Sbjct: 430 SILINAFCGKGDVMKCLDLM 449



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 15/162 (9%)

Query: 363 EKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRL 422
           + VE +  ++  +IS  V   NS +  A ++F    +   E D+   N L+  L ++ R+
Sbjct: 241 QHVERSGVVFDVLIS--VFASNSMLENALDVFSNAKHVGLEPDIRTCNFLLKCLVEANRV 298

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLH 482
                +F++L   GP PN+ TYT+M+   C + G +                 +A  +L 
Sbjct: 299 EFVRRVFEELKDRGPSPNIYTYTIMMNFYCSDVGCDAGMR-------------QAAVILG 345

Query: 483 KMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQ 524
           K+ +   KP  +T S     L K  N    + L+ +    NQ
Sbjct: 346 KIYRSGEKPTVVTYSTYIHGLCKVGNVEAALMLIRNLHYTNQ 387


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 119/493 (24%), Positives = 208/493 (42%), Gaps = 85/493 (17%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           +SG VE  +A  F   M+    +P   ++ +L+  L           L + ++  GL P+
Sbjct: 290 RSGAVE--EAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPN 347

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V    L++ F K    ++AF  L  ++     P+ +    LIRGLC  G+   AS L  
Sbjct: 348 IVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLK 407

Query: 182 KFVAFDCRPN-------------------------------VIPNVICYASIIDGLCKDG 210
           + +    RP+                               ++PNV  Y  +I+GLC++G
Sbjct: 408 EMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNG 467

Query: 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGE 270
              +   L  +M   G+ P+AF+Y  LI  +         +GN S A E  E+    N  
Sbjct: 468 ESKEAGNLLEEMISEGLKPNAFMYAPLIIGHS-------KEGNISLACEALEKMTKAN-- 518

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
                HPD+  Y S+I  L     +++A+E +  ++ RG++PD   YS LI GYC  G +
Sbjct: 519 ----VHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNL 574

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEA 390
           + A +L   + + G  P+  +Y  L+  Y K    E+  S+   M+  G +PDN      
Sbjct: 575 EKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNH----- 629

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
                            ++  ++  L +S  +  A+ +  ++ + G  P++  Y+ +I G
Sbjct: 630 -----------------IYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISG 672

Query: 451 LCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCH 510
           LC                 KI +  KA+ LL +MAK  ++P  +  + L +   +  +  
Sbjct: 673 LC-----------------KIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDIS 715

Query: 511 ECMNLLPSFLSRN 523
              N+  S L++ 
Sbjct: 716 RARNVFDSILAKG 728



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 122/499 (24%), Positives = 196/499 (39%), Gaps = 92/499 (18%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N ++  L             E +   GL PD  +   LMN  CK   + +A   L  +
Sbjct: 280 TYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEM 339

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
                 P++V  G L+ G   +GK  EA  +  + ++      V PN I Y ++I GLCK
Sbjct: 340 SCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMIS----AGVQPNKIMYDNLIRGLCK 395

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR----------------------------V 240
            G + +   L  +M   G+ PD F YN L++                             
Sbjct: 396 IGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYS 455

Query: 241 YCCAVNWEDAKGNTSAALELHEEFV------------------NGNGELGVIC------- 275
           Y   +N     G +  A  L EE +                  +  G + + C       
Sbjct: 456 YGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMT 515

Query: 276 ----HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
               HPD+  Y S+I  L     +++A+E +  ++ RG++PD   YS LI GYC  G ++
Sbjct: 516 KANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLE 575

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI---- 387
            A +L   + + G  P+  +Y  L+  Y K    E+  S+   M+  G +PDN       
Sbjct: 576 KADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVI 635

Query: 388 --------LEAAELFRT-LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
                   +E A +  T +       DL +++ L+ GLCK   +  A  L  ++ + G E
Sbjct: 636 RNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLE 695

Query: 439 PNVVTYTVMICGLCIEGGIEKA------------------YDLLPDMEEKIRECLKAIEL 480
           P +V Y  +I G C  G I +A                  Y  L D   K  +   A +L
Sbjct: 696 PGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDL 755

Query: 481 LHKMAKRYVKPDEITVSIL 499
             +M  R + PD    ++L
Sbjct: 756 YKEMLDRGIAPDAFVYNVL 774



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/455 (25%), Positives = 187/455 (41%), Gaps = 100/455 (21%)

Query: 116 IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
           +GL PD  + N LM    +      AF  L  +      P+V + G +I GLC  G+  E
Sbjct: 412 VGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKE 471

Query: 176 ASGLFTKFVAFDCRPN-------------------------------VIPNVICYASIID 204
           A  L  + ++   +PN                               V P++ CY S+I 
Sbjct: 472 AGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIK 531

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA------------KG 252
           GL   G + +    +  ++ RG+ PD F Y+ LI  YC   N E A            K 
Sbjct: 532 GLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKP 591

Query: 253 NTSAALELHEEFVN---------------GNGE------LGVICH--------------- 276
           N     +L E +                 G+G+       G++                 
Sbjct: 592 NADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVL 651

Query: 277 ---------PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
                    PD+  Y S+I+ LCK   ++KA  L  +M   G+ P +V Y++LIDG+C  
Sbjct: 652 TEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRS 711

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---- 383
           G I  AR +F SI ++G +P+  +Y  LI+   K   + +A  LY EM+  G+ PD    
Sbjct: 712 GDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVY 771

Query: 384 ---NSCILEAAELFRTLHNT-----KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
               +   +AA+L + L  T     +   ++++FN LV G CK  +L+   +L   +   
Sbjct: 772 NVLATGCSDAADLEQALFLTEEMFNRGYANVSLFNTLVHGFCKRGKLQETEKLLHVMMDR 831

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
              PN  T   ++      G + +A+ +  ++++K
Sbjct: 832 EIVPNAQTVEKVVSEFGKAGKLGEAHRVFAELQQK 866



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 165/364 (45%), Gaps = 30/364 (8%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+LPD  + +  +   CK      A      + R+  + + VT   +I GLC  G   EA
Sbjct: 238 GILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEA 297

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
            G   + V +     + P+   Y ++++GLCK   + + + L  +M   G+ P+  VY +
Sbjct: 298 FGFKEEMVDY----GLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGT 353

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           L+  +         +G T+ A ++ +E ++          P+ + Y ++I  LCK   + 
Sbjct: 354 LVDGFM-------KEGKTAEAFDILKEMISAG------VQPNKIMYDNLIRGLCKIGQLG 400

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A +L  +M   G+ PD   Y+ L+ G+      D A +L   + + G +P+  SY  +I
Sbjct: 401 RASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMI 460

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFE 403
           N   +  + +EA +L  EMIS G++P+                I  A E    +      
Sbjct: 461 NGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVH 520

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            DL  +N L+ GL    R+  A E + ++ + G  P+  TY+ +I G C  G +EKA  L
Sbjct: 521 PDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQL 580

Query: 464 LPDM 467
           L  M
Sbjct: 581 LRQM 584



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 167/394 (42%), Gaps = 63/394 (15%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P    L++L++ + K   V +A   +  +     +P       L++ L       +A  L
Sbjct: 171 PSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLR----ADAMEL 226

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             K   F     ++P+V  Y++ I+  CK    +  + +F +M+ R    +   YN +I 
Sbjct: 227 LWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMIS 286

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C +   E+A G         EE V+          PD  +Y +++N LCK   + +AK
Sbjct: 287 GLCRSGAVEEAFG-------FKEEMVDYG------LSPDAFTYGALMNGLCKGSRLKEAK 333

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            L  +M   G+ P++VVY +L+DG+   G+  +A  +   + S G  P+   Y+ LI   
Sbjct: 334 ALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGL 393

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            KI ++  A  L  EMI +G+RPD                         +N L+ G  + 
Sbjct: 394 CKIGQLGRASKLLKEMIKVGLRPDT----------------------FTYNPLMQGHFQQ 431

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLK--- 476
                A+EL  ++   G  PNV +Y +MI GLC  G  ++A +LL   EE I E LK   
Sbjct: 432 HDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLL---EEMISEGLKPNA 488

Query: 477 ------------------AIELLHKMAKRYVKPD 492
                             A E L KM K  V PD
Sbjct: 489 FMYAPLIIGHSKEGNISLACEALEKMTKANVHPD 522



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 145/316 (45%), Gaps = 24/316 (7%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G +E  D L     M++    P   ++  LL        Y     + + +   G  PD
Sbjct: 570 KTGNLEKADQL--LRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPD 627

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
                I++    +   +  AF+ L  + +    PD+     LI GLC      +A GL  
Sbjct: 628 NHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLD 687

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           +      +  + P ++CY ++IDG C+ G +++ R +F  +  +G+ P+   Y +LI   
Sbjct: 688 EM----AKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGN 743

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C         G+ + A +L++E +    + G+   PD   Y +++ + C D   D  + L
Sbjct: 744 C-------KNGDITDAFDLYKEML----DRGIA--PDAFVY-NVLATGCSDA-ADLEQAL 788

Query: 302 FL--DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           FL  +M +RG   +V ++++L+ G+C  G++ +  KL   +     +P+  +   +++ +
Sbjct: 789 FLTEEMFNRG-YANVSLFNTLVHGFCKRGKLQETEKLLHVMMDREIVPNAQTVEKVVSEF 847

Query: 360 SKIEKVEEALSLYGEM 375
            K  K+ EA  ++ E+
Sbjct: 848 GKAGKLGEAHRVFAEL 863



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 103/259 (39%), Gaps = 53/259 (20%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P +  ++SL+  L         + L + +   GL P  V  N L++ FC+   +S A   
Sbjct: 661 PDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNV 720

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
              IL K   P+ VT   LI G C  G  T+         AFD                 
Sbjct: 721 FDSILAKGLVPNCVTYTALIDGNCKNGDITD---------AFD----------------- 754

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
                        L+ +M  RGI PDAFVYN L      A    DA  +   AL L EE 
Sbjct: 755 -------------LYKEMLDRGIAPDAFVYNVL------ATGCSDA-ADLEQALFLTEEM 794

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
            N         + +V  + ++++  CK   + + ++L   M  R I+P+      ++  +
Sbjct: 795 FNRG-------YANVSLFNTLVHGFCKRGKLQETEKLLHVMMDREIVPNAQTVEKVVSEF 847

Query: 325 CLMGRIDDARKLFVSIESE 343
              G++ +A ++F  ++ +
Sbjct: 848 GKAGKLGEAHRVFAELQQK 866



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 102/251 (40%), Gaps = 28/251 (11%)

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG--VICHPDVLSYCSIINSL 289
           F Y S  R+   A    DA    +A+L     F   NG L   ++ HP      + I   
Sbjct: 102 FFYWSRPRI---APPSADAFARLAASLCAASLFPQANGLLHQMILAHPHPPLVLASIQRA 158

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
            +D           D +SR   P   V   L+D Y   G + +A ++ + +   G  P  
Sbjct: 159 IQDT----------DHRSRSPSPSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTR 208

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCILE----------AAELFRT 396
              N L+    + + +E    L G M   G+ PD    S  +E          A ++F  
Sbjct: 209 RCCNGLLKDLLRADAMELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEE 268

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           +      ++   +N ++ GLC+S  +  A+   +++  YG  P+  TY  ++ GLC    
Sbjct: 269 MRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSR 328

Query: 457 IEKAYDLLPDM 467
           +++A  LL +M
Sbjct: 329 LKEAKALLDEM 339


>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 665

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 125/462 (27%), Positives = 206/462 (44%), Gaps = 55/462 (11%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
            AL  F  +      P +  +N LL A+  +  +     +   +   G  P+  + NIL+
Sbjct: 132 QALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILL 191

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
              CK   V  A   L  +  K   PDVV+   +I  +   GK  EA  L  +F      
Sbjct: 192 KALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEARELSIRFQ----- 246

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
               PNV  Y ++I+G C++  V +V +L   M  +GI P+   Y+++I           
Sbjct: 247 ----PNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSL-------S 295

Query: 250 AKGNTSAALELHEE-FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
             GN   AL +  + FV G       C P+V ++ S++        V +A  ++  M   
Sbjct: 296 GIGNVELALAVWAKMFVRG-------CSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEE 348

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G  P+VV Y++LI G C  G++ +A  +   +E  GC P+ S+Y  LI+ ++K   +  A
Sbjct: 349 GFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGA 408

Query: 369 LSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDG 415
             ++ +M++ G  P+             +S   +A  L   +       +   FN  + G
Sbjct: 409 SEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKG 468

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK----- 470
           LC S R+  A  LF ++ +YG  PN+ TY  ++ GL  E  I++A +L+ +MEEK     
Sbjct: 469 LCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELN 528

Query: 471 -------------IRECLKAIELLHKMAKRYVKPDEITVSIL 499
                        + +  +A++LL KM    VKPD IT + L
Sbjct: 529 LVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTL 570



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 98/384 (25%), Positives = 165/384 (42%), Gaps = 66/384 (17%)

Query: 115 TIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFT 174
           +I   P+    N L+N FC+   V + F+ LG+++ K   P+V+T   +I  L   G   
Sbjct: 242 SIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVE 301

Query: 175 EASGLFTKFVAFDCRPNVI-------------------------------PNVICYASII 203
            A  ++ K     C PNV                                PNV+ Y ++I
Sbjct: 302 LALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLI 361

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
            GLC  G + +   +   M+  G  P+   Y +LI  +  A       G+   A E+  +
Sbjct: 362 HGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKA-------GDLVGASEIWNK 414

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
            +  NG     C P+V+ Y S++N LC+  +  +A  L   M +    P+ V +++ I G
Sbjct: 415 MMT-NG-----CIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKG 468

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            C  GR++ A  LF  +E  GC P+  +YN +++   K  +++EAL L  EM   G+   
Sbjct: 469 LCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGM--- 525

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                              EL+L  +N +  G C   +   A +L  K+   G +P+ +T
Sbjct: 526 -------------------ELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAIT 566

Query: 444 YTVMICGLCIEGGIEKAYDLLPDM 467
           Y  +    C++G ++ A  LL  +
Sbjct: 567 YNTLTYAYCMQGKVKTAIQLLDKL 590



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 104/404 (25%), Positives = 177/404 (43%), Gaps = 40/404 (9%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E ++ +       M+     P + ++++++ +L+G       + +  ++   G  P+  +
Sbjct: 262 EYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYT 321

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
              LM  +     V +A     R+  + F P+VV    LI GLC  GK  EA  + +K  
Sbjct: 322 FTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKME 381

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
              C PNV      Y ++IDG  K G +     ++  M   G  P+  VY S++ V C +
Sbjct: 382 RNGCSPNVST----YGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRS 437

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
             +       S A  L E+    N      C P+ +++ + I  LC    V+ A  LF  
Sbjct: 438 SMF-------SQAWSLIEKMSTDN------CPPNTVTFNTFIKGLCCSGRVECAINLFCQ 484

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M+  G  P++  Y+ ++DG     RI +A +L   +E +G   +  +YNT+   +  + K
Sbjct: 485 MEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGK 544

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
            EEAL L G+M+  GV+PD                         +N L    C   ++++
Sbjct: 545 FEEALKLLGKMLVGGVKPD----------------------AITYNTLTYAYCMQGKVKT 582

Query: 425 AWELFKKLPRYGPE-PNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           A +L  KL   G   P V  YT ++ G+C + G+E+A   L  M
Sbjct: 583 AIQLLDKLSAGGKWVPEVAAYTSLLWGICNQIGVEEAVLYLDKM 626



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 176/395 (44%), Gaps = 40/395 (10%)

Query: 57  LSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           +S  S  G VEL  AL  +  M     +P + +F SL+     +   +  + +  R+   
Sbjct: 291 ISSLSGIGNVEL--ALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEE 348

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  P+ V+ N L++  C    + +A     ++ R   SP+V T G LI G    G    A
Sbjct: 349 GFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGA 408

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
           S ++ K +   C    IPNV+ Y S+++ LC+    ++   L   M      P+   +N+
Sbjct: 409 SEIWNKMMTNGC----IPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNT 464

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
            I+  CC+       G    A+ L  +      + G  C P++ +Y  +++ L K+  + 
Sbjct: 465 FIKGLCCS-------GRVECAINLFCQM----EQYG--CSPNIKTYNEVLDGLLKENRIK 511

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A EL  +M+ +G+  ++V Y+++  G+C +G+ ++A KL   +   G  PD  +YNTL 
Sbjct: 512 EALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLT 571

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
            +Y    KV+ A+ L  ++ + G                     K+  ++  +  L+ G+
Sbjct: 572 YAYCMQGKVKTAIQLLDKLSAGG---------------------KWVPEVAAYTSLLWGI 610

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
           C    +  A     K+   G   N  T+  ++ GL
Sbjct: 611 CNQIGVEEAVLYLDKMLNEGICLNAATWNALVRGL 645



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 134/292 (45%), Gaps = 42/292 (14%)

Query: 197 ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSA 256
           + Y  +I+ L ++  V+ V+ L   MK  GI     ++ ++I  Y          G    
Sbjct: 80  LTYQIMIEKLGRECDVDGVQYLLQQMKLEGISCSEDLFINVINTY-------RRVGLAEQ 132

Query: 257 ALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV 316
           AL++         E G  C P V  Y  +++++  +      + ++ +MK  G  P+V  
Sbjct: 133 ALKMFYRI----REFG--CQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYT 186

Query: 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
           Y+ L+   C   R+D A KL V + ++GC PD  SY T+I+S SK+ KVEEA  L     
Sbjct: 187 YNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEAREL----- 241

Query: 377 SMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
                                 + +F+ +++V+N L++G C+ ++++  + L  ++   G
Sbjct: 242 ----------------------SIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKG 279

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRY 488
            +PNV+TY+ +I  L   G +E A  +   M   +R C   +     + K Y
Sbjct: 280 IDPNVITYSTVISSLSGIGNVELALAVWAKM--FVRGCSPNVYTFTSLMKGY 329


>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
 gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
          Length = 479

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 132/491 (26%), Positives = 197/491 (40%), Gaps = 121/491 (24%)

Query: 91  NSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILR 150
           N+LL  L   +     + +  R+ +    P+ +S   L+   C+   +  A   +  + R
Sbjct: 4   NALLDLLERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAR 63

Query: 151 KVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDG 210
           +   PDV T   +I  LC   + + A   F      +  P   P+V+ Y +++ GLCK+G
Sbjct: 64  EKLVPDVFTYNVVIDTLCKARRISRAIEFF------ETMPE--PDVVTYNTLLGGLCKNG 115

Query: 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGE 270
            V +   LF  M+G GI P    Y +LI V+C    +E A G     L+L          
Sbjct: 116 RVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYG----LLQLMASRK----- 166

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
               C P V SYCSIIN LCK+  VD+A +LF +MK  G  PD V Y++LI G C+  R+
Sbjct: 167 ----CSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRL 222

Query: 331 DDARKL-----------------------------------FVSIESEGCIPDTSSYNTL 355
            +A+ L                                   F  +  +GC PD  ++  L
Sbjct: 223 HEAKDLLTVMVENGFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVL 282

Query: 356 INSYSKIEKVEEALS---------------------------------LYGEMISMGVRP 382
           ++    + K+  ALS                                 L  +M   GV P
Sbjct: 283 VSKLCILRKLRPALSVVRNYPACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGVPP 342

Query: 383 -------------DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
                        D    + A   FR +     E D+  +N LVDG CK+ RL  A ++ 
Sbjct: 343 NVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKADRLDMAEKMV 402

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAI-ELLHKMAKRY 488
           + + + G  PN+VTY  ++   C +G +E                  AI ELLH M  R 
Sbjct: 403 RYMDQSGLPPNIVTYNTLVGHHCRKGKVE------------------AIGELLHTMVSRG 444

Query: 489 VKPDEITVSIL 499
            +PD  T S L
Sbjct: 445 RQPDVATWSTL 455



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 100/418 (23%), Positives = 171/418 (40%), Gaps = 50/418 (11%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            ++ A+ FF  M    P P + ++N+LLG L           L   +   G+ P  V+  
Sbjct: 85  RISRAIEFFETM----PEPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYT 140

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ FCKM     A+  L  +  +  SP V +   +I GLC   K  +A  LF +    
Sbjct: 141 TLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLA 200

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C+P+ +     Y ++I GLC    +++ + L   M   G  PD   + +LI   C    
Sbjct: 201 GCKPDRVT----YNTLIHGLCVKQRLHEAKDLLTVMVENGFQPDKITFTALIEGLCTTDR 256

Query: 247 WED--------AKGNTSAALELHEEFVNG-------NGELGVI-----CHPDVLSYCSII 286
            ++        AK   +  L  H   V+           L V+     C   V+ Y  I 
Sbjct: 257 IKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPALSVVRNYPACPEAVILYTPIF 316

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
             L +    D+A  L   M  RG+ P+VV Y++   G         A + F  +  +G  
Sbjct: 317 RELGRRRGFDRAARLLQKMARRGVPPNVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIE 376

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406
           PD  +YN L++ + K ++++ A  +   M   G+ P                      ++
Sbjct: 377 PDMVAYNVLVDGFCKADRLDMAEKMVRYMDQSGLPP----------------------NI 414

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
             +N LV   C+  ++ +  EL   +   G +P+V T++ ++ GL + G  + AY  L
Sbjct: 415 VTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAGLFMVGQADAAYSFL 472



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 93/226 (41%), Gaps = 35/226 (15%)

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------ 383
           +F  I S+ C P+  SY  L+ +  +  K+++A S   EM    + PD            
Sbjct: 22  VFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLC 81

Query: 384 -NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
               I  A E F T+     E D+  +N L+ GLCK+ R+  A  LF  +   G  P+ V
Sbjct: 82  KARRISRAIEFFETMP----EPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDV 137

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKM 484
           TYT +I   C     E AY LL  M                    K R+  +A +L  +M
Sbjct: 138 TYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEM 197

Query: 485 AKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
                KPD +T + L   L   +  HE  +LL   +    +  K+T
Sbjct: 198 KLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQPDKIT 243


>gi|15227316|ref|NP_179280.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75217061|sp|Q9ZVX5.1|PP156_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g16880
 gi|3757517|gb|AAC64219.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|18175643|gb|AAL59902.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|20465657|gb|AAM20297.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251452|gb|AEC06546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 124/486 (25%), Positives = 220/486 (45%), Gaps = 47/486 (9%)

Query: 65  EVELNDALCFFNYMI-HMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV 123
           E +L DAL     M+   +  P   ++N++L A++ K    +   L   +   GL+P+ V
Sbjct: 217 EGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRV 276

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           + N L+  +CK+  + +AF  +  + +    PD+ T   LI GLC  G   E   L    
Sbjct: 277 TYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAM 336

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
            +   +    P+V+ Y ++IDG  + G   + R L   M+  G+  +   +N        
Sbjct: 337 KSLKLQ----PDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHN-------I 385

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
           ++ W   +    A     +E V+ +G       PD+++Y ++I +  K   +  A E+  
Sbjct: 386 SLKWLCKEEKREAVTRKVKELVDMHG-----FSPDIVTYHTLIKAYLKVGDLSGALEMMR 440

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
           +M  +GI  + +  ++++D  C   ++D+A  L  S    G I D  +Y TLI  + + E
Sbjct: 441 EMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREE 500

Query: 364 KVEEALSLYGEMISMGVRPD----NSCILE---------AAELFRTLHNTKFELDLTVFN 410
           KVE+AL ++ EM  + + P     NS I           A E F  L  +    D + FN
Sbjct: 501 KVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFN 560

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE- 469
            ++ G CK  R+  A+E + +  ++  +P+  T  +++ GLC EG  EKA +    + E 
Sbjct: 561 SIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEE 620

Query: 470 ----------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECM 513
                           K ++  +A +LL +M ++ ++PD  T +    LL +D    E  
Sbjct: 621 REVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETD 680

Query: 514 NLLPSF 519
            LL  F
Sbjct: 681 ELLKKF 686



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 128/518 (24%), Positives = 218/518 (42%), Gaps = 90/518 (17%)

Query: 79  IHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKM- 135
           +H+ P P    F+  L A    GK +    + + +++  + L P+ ++ N L+    +  
Sbjct: 123 LHLSPPPSKALFDIALSAYLHEGKPHVA--LQIFQKMIRLKLKPNLLTCNTLLIGLVRYP 180

Query: 136 --IGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
               +S A      +++   S +V T   L+ G C++GK  +A G+  + V+      V 
Sbjct: 181 SSFSISSAREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVS---EFKVN 237

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P+ + Y +I+  + K G ++ ++ L LDMK  G+ P+   YN+L+  YC         G+
Sbjct: 238 PDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYC-------KLGS 290

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
              A ++ E     N        PD+ +Y  +IN LC    + +  EL   MKS  + PD
Sbjct: 291 LKEAFQIVELMKQTN------VLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPD 344

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGC---------------------------- 345
           VV Y++LIDG   +G   +ARKL   +E++G                             
Sbjct: 345 VVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVK 404

Query: 346 --------IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---SCIL------ 388
                    PD  +Y+TLI +Y K+  +  AL +  EM   G++ +    + IL      
Sbjct: 405 ELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKE 464

Query: 389 ----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
               EA  L  + H   F +D   +  L+ G  +  ++  A E++ ++ +    P V T+
Sbjct: 465 RKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTF 524

Query: 445 TVMICGLCIEGGIEKAYD---------LLPDMEE---------KIRECLKAIELLHKMAK 486
             +I GLC  G  E A +         LLPD            K     KA E  ++  K
Sbjct: 525 NSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIK 584

Query: 487 RYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQ 524
              KPD  T +IL   L K+    + +N   + +   +
Sbjct: 585 HSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEERE 622



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 119/275 (43%), Gaps = 30/275 (10%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E ++  AL  ++ M  ++ TP + +FNSL+G L         +   + L   GLLPD  +
Sbjct: 499 EEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDST 558

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N ++  +CK   V  AF      ++  F PD  T   L+ GLC +G   +A   F   +
Sbjct: 559 FNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLI 618

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
                     + + Y ++I   CKD  + +   L  +M+ +G+ PD F YNS I +    
Sbjct: 619 E-----EREVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLL--- 670

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
              ED  G  S   EL ++F   +G+ G               S+ +D+ V+  K     
Sbjct: 671 --MED--GKLSETDELLKKF---SGKFG---------------SMKRDLQVETEKNPATS 708

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
                +  + + YS +ID  C  GR+ +  + + S
Sbjct: 709 ESKEELNTEAIAYSDVIDELCSRGRLKEHSRSYTS 743


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 115/464 (24%), Positives = 210/464 (45%), Gaps = 62/464 (13%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A+  F  M   +  P + ++ +L+  L  +      + L + +   G  P  V+ N+
Sbjct: 204 VDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNV 263

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N  CK   +      +  +  K   P+ VT   +I GLC++GK  +A  L  + VA  
Sbjct: 264 LINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASK 323

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C    +PN + Y ++I+GL K G       L   ++ RG + + + Y++LI         
Sbjct: 324 C----VPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKS 379

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           E+A G       L ++ V         C P+++ Y ++I+ LC++  +D+AKE+  +M +
Sbjct: 380 EEAMG-------LWKKMVEKG------CQPNIVVYSALIDGLCREGKLDEAKEILCEMVN 426

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           +G  P+   YSSLI G+   G    A +++  +    C+P+   Y+ LI+   +  K+ E
Sbjct: 427 KGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLRE 486

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           A+ ++  M+  G+RP                      D+  ++ ++ GLC +  +    +
Sbjct: 487 AMMMWTHMLGRGLRP----------------------DVVAYSSMIHGLCNAGSVEVGLK 524

Query: 428 LFKKL--PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMA 485
           LF ++       +P+VVTY +++  LC +  I                   AI+LL+ M 
Sbjct: 525 LFNEMLCQESDSQPDVVTYNILLRALCKQNSIS-----------------HAIDLLNSML 567

Query: 486 KRYVKPDEITVSI----LEELLNKDENCHECMNLLPSFLSRNQE 525
            R   PD IT +I    L E LN  ++  E ++ L   L + Q 
Sbjct: 568 DRGCNPDLITCNIFLNALREKLNPPQDGREFLDELVVRLHKRQR 611



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/370 (28%), Positives = 169/370 (45%), Gaps = 58/370 (15%)

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN 213
           SP+V++   +I+ +C  G    A  +F +     C P+V      Y +++DGLCK+  ++
Sbjct: 185 SPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFT----YCTLMDGLCKEDRID 240

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE-FVNGNGELG 272
           +  +L  +M+  G +P +  +N LI   C        KG+     +L +  F+ G     
Sbjct: 241 EAVLLLDEMQIEGCFPSSVTFNVLINGLC-------KKGDMVRVTKLVDNMFLKG----- 288

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
             C P+ ++Y +IIN LC    +DKA  L   M +   +P+ V Y +LI+G    GR  D
Sbjct: 289 --CVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVD 346

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392
              L  S+E  G   +  +Y+TLI+   K EK EEA+ L+ +M+  G +P          
Sbjct: 347 GVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQP---------- 396

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
                       ++ V++ L+DGLC+  +L  A E+  ++   G  PN  TY+ +I G  
Sbjct: 397 ------------NIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFF 444

Query: 453 IEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHEC 512
             G  +                 KAI +  +MAK    P+EI  S+L   L +D    E 
Sbjct: 445 KTGNSQ-----------------KAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREA 487

Query: 513 MNLLPSFLSR 522
           M +    L R
Sbjct: 488 MMMWTHMLGR 497



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 121/281 (43%), Gaps = 42/281 (14%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L+ A+   + M+  +  P   ++ +L+  L  +   V+ + L   L   G   +  + +
Sbjct: 308 KLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYS 367

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++   K     +A     +++ K   P++V    LI GLC +GK  EA  +  + V  
Sbjct: 368 TLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNK 427

Query: 187 DCRPNV-------------------------------IPNVICYASIIDGLCKDGFVNKV 215
            C PN                                +PN ICY+ +I GLC+DG + + 
Sbjct: 428 GCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREA 487

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
            +++  M GRG+ PD   Y+S+I   C A       G+    L+L  E +    +     
Sbjct: 488 MMMWTHMLGRGLRPDVVAYSSMIHGLCNA-------GSVEVGLKLFNEMLCQESD----S 536

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV 316
            PDV++Y  ++ +LCK   +  A +L   M  RG  PD++ 
Sbjct: 537 QPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLIT 577



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 16/169 (9%)

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
            + SLI+ Y   G      ++F  ++ E  +    ++  +  +Y K    E+A+ L+G M
Sbjct: 82  TFYSLIENYANSGDFGTLFQVFDRMKRERRVFIEKNFILVFRAYGKAHLPEKAIELFGRM 141

Query: 376 IS-----MGVRPDNS---CILEAAELFRTLH--------NTKFELDLTVFNCLVDGLCKS 419
           +        VR  NS    I++     R L          T    ++  FN ++  +CK 
Sbjct: 142 VDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKL 201

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
             +  A E+F+++     EP+V TY  ++ GLC E  I++A  LL +M+
Sbjct: 202 GLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQ 250


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 107/406 (26%), Positives = 184/406 (45%), Gaps = 39/406 (9%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E +L  A   F  M      P + ++NSL+            + + E +   G  PD ++
Sbjct: 264 EGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVIT 323

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N L+NCFCK   +  AF  L  + ++   P+VVT   LI   C  G   EA+  F   +
Sbjct: 324 YNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMI 383

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
               R  + PN   Y S+ID  CK G +N+   L  +M+  G+  +   Y +L+   C  
Sbjct: 384 ----RVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLC-- 437

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
              ED +   +      EE      + G   +  +  Y S+ +   K  +++KA ++  +
Sbjct: 438 ---EDGRMREA------EELFGALLKAGWTLNQQI--YTSLFHGYIKAKMMEKAMDILEE 486

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M  + + PD+++Y + I G C    I+D+  +   +   G   ++  Y TLI++Y K+ K
Sbjct: 487 MNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGK 546

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
             EA++L  EM  +G++                      + +  +  L+DGLCK   ++ 
Sbjct: 547 TTEAVNLLQEMQDLGIK----------------------ITVVTYGVLIDGLCKIGLVQQ 584

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           A   F  + R G +PN++ YT +I GLC    +E+A +L  +M +K
Sbjct: 585 AVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDK 630



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/351 (30%), Positives = 158/351 (45%), Gaps = 39/351 (11%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P F   + L N    +  + +A     ++ +    P V +   L+  L    K   A   
Sbjct: 179 PGFGVFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLALSF 238

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F   V       + P+V  Y  +I  L ++G +   R LF +MK +G+ PD   YNSLI 
Sbjct: 239 FKDMVV----AGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLID 294

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            Y          G  + A+ + EE  +        C PDV++Y S+IN  CK   + +A 
Sbjct: 295 GY-------GKVGMLTGAVSVFEEMKDAG------CEPDVITYNSLINCFCKFERIPQAF 341

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           E    MK RG+ P+VV YS+LID +C  G + +A K FV +   G  P+  +Y +LI++ 
Sbjct: 342 EYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDAN 401

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            KI  + EA  L  EM   GV                       L++  +  L+DGLC+ 
Sbjct: 402 CKIGDLNEAFKLESEMQQAGV----------------------NLNIVTYTALLDGLCED 439

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            R+R A ELF  L + G   N   YT +  G      +EKA D+L +M +K
Sbjct: 440 GRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKK 490



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 128/247 (51%), Gaps = 31/247 (12%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P V +Y  +I  L ++  ++ A+ LF +MK++G+ PD+V Y+SLIDGY  +G +  A  +
Sbjct: 249 PSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSV 308

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC- 386
           F  ++  GC PD  +YN+LIN + K E++ +A      M   G++P         D  C 
Sbjct: 309 FEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCK 368

Query: 387 ---ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
              +LEA + F  +     + +   +  L+D  CK   L  A++L  ++ + G   N+VT
Sbjct: 369 AGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVT 428

Query: 444 YTVMICGLCIEGGIEKAYDLLP-------DMEEKIRECL-----------KAIELLHKMA 485
           YT ++ GLC +G + +A +L          + ++I   L           KA+++L +M 
Sbjct: 429 YTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMN 488

Query: 486 KRYVKPD 492
           K+ +KPD
Sbjct: 489 KKNLKPD 495



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 167/380 (43%), Gaps = 84/380 (22%)

Query: 75  FNYMIHMQPTPFMP---SFNSLLGA-------LAGKKYYVNFICLSERLNTIGLLPDFVS 124
           F Y+  M+     P   ++++L+ A       L   K++V+ I        +GL P+  +
Sbjct: 341 FEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMI-------RVGLQPNEFT 393

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
              L++  CK+  +++AF     + +   + ++VT   L+ GLC  G+  EA  LF   +
Sbjct: 394 YTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALL 453

Query: 185 --------------------------AFDC-----RPNVIPNVICYASIIDGLCKDGFVN 213
                                     A D      + N+ P+++ Y + I GLC+   + 
Sbjct: 454 KAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIE 513

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE---------- 263
               +  +M   G+  ++++Y +LI  Y          G T+ A+ L +E          
Sbjct: 514 DSMAVIREMMDCGLTANSYIYTTLIDAYF-------KVGKTTEAVNLLQEMQDLGIKITV 566

Query: 264 -----FVNGNGELGVI--------------CHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                 ++G  ++G++                P+++ Y ++I+ LCK+  +++AK LF +
Sbjct: 567 VTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNE 626

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M  +GI PD +VY+SLIDG    G   +A  L   +   G   D  +Y +LI  +S+  +
Sbjct: 627 MLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQ 686

Query: 365 VEEALSLYGEMISMGVRPDN 384
           V+ A SL  EM+  G+ PD 
Sbjct: 687 VQLAKSLLDEMLRKGIIPDQ 706



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 105/233 (45%), Gaps = 17/233 (7%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL  +      L++ + K+   ++A   L  +        VVT G LI GLC  G   +A
Sbjct: 526 GLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQA 585

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
              F        R  + PN++ Y ++IDGLCK+  + + + LF +M  +GI PD  VY S
Sbjct: 586 VRYFDHMT----RNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTS 641

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI       +     GN   AL L    V    EL      D+ +Y S+I    +   V 
Sbjct: 642 LI-------DGNMKHGNPGEALSLRNRMVEIGMEL------DLCAYTSLIWGFSRYGQVQ 688

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
            AK L  +M  +GIIPD V+   L+  Y  +G I++A  L   +   G I  T
Sbjct: 689 LAKSLLDEMLRKGIIPDQVLCICLLRKYYELGDINEALALHDDMARRGLISGT 741



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 146/356 (41%), Gaps = 28/356 (7%)

Query: 26  KPISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVE-LNDALCFFNYMIHMQPT 84
           +   L SE + + ++ N V+     T LL  L E+ +  E E L  AL    + ++ Q  
Sbjct: 409 EAFKLESEMQQAGVNLNIVTY----TALLDGLCEDGRMREAEELFGALLKAGWTLNQQ-- 462

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
                + SL       K     + + E +N   L PD +     +   C+   + D+   
Sbjct: 463 ----IYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAV 518

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           +  ++    + +      LI      GK TEA  L  +         +   V+ Y  +ID
Sbjct: 519 IREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDL----GIKITVVTYGVLID 574

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           GLCK G V +    F  M   G+ P+  +Y +LI   C     E+AK        L  E 
Sbjct: 575 GLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAK-------NLFNEM 627

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           ++          PD L Y S+I+   K     +A  L   M   G+  D+  Y+SLI G+
Sbjct: 628 LDKG------ISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGF 681

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
              G++  A+ L   +  +G IPD      L+  Y ++  + EAL+L+ +M   G+
Sbjct: 682 SRYGQVQLAKSLLDEMLRKGIIPDQVLCICLLRKYYELGDINEALALHDDMARRGL 737



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 13/207 (6%)

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
           +C P    + ++ N L    ++++A++ F  M    ++P V   + L+       +   A
Sbjct: 176 VCRPGFGVFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLA 235

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCI-- 387
              F  +   G  P   +YN +I   ++   +E A SL+ EM + G+RPD    NS I  
Sbjct: 236 LSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDG 295

Query: 388 -------LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
                    A  +F  + +   E D+  +N L++  CK  R+  A+E    + + G +PN
Sbjct: 296 YGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPN 355

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDM 467
           VVTY+ +I   C  G + +A     DM
Sbjct: 356 VVTYSTLIDAFCKAGMLLEANKFFVDM 382


>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 707

 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 128/465 (27%), Positives = 202/465 (43%), Gaps = 72/465 (15%)

Query: 53  LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSER 112
           LLK L  N     +E   A+     M      P + S+N+++      K     + L+  
Sbjct: 148 LLKGLCRN-----LEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEKALQLANE 202

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +   G     V+  IL++ FCK   + +A   L  +  K    D++    LIRG C  G+
Sbjct: 203 MQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGE 262

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
                 LF + +         P  I Y ++I G CK G + +   +F  M  RG+ P+ +
Sbjct: 263 LDRGKALFDEVL----ERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVY 318

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            Y  LI   C         G T  AL+L    +  + E      P+V++Y  IIN LCKD
Sbjct: 319 TYTGLIDGLC-------GVGKTKEALQLLNLMLQKDEE------PNVVTYNIIINKLCKD 365

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI--ESEGCIPDTS 350
            LV  A E+   MK R   PD + Y+SL+ G C  G +D+A KL   +  +S    PD  
Sbjct: 366 SLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVI 425

Query: 351 SYNTLINSYSKIEKVEEALSLY---------GEMISMGVRPDNSC----ILEAAELFRTL 397
           S+N LI+   K  ++ +AL +Y         G++++  +  +++     + +A EL++ +
Sbjct: 426 SFNALIHGLCKGNRLHQALDIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMELWKQI 485

Query: 398 HNTKF---------------------------------ELDLTVF--NCLVDGLCKSWRL 422
            N+K                                  EL  +VF  NCL+  LCK   L
Sbjct: 486 SNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTL 545

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
             AW LF+++ R    P+V+++ +MI G    G I+ A  LL  M
Sbjct: 546 DQAWRLFEEMQRDDSFPDVISFNIMIDGSLKAGDIKSAESLLVGM 590



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 114/449 (25%), Positives = 203/449 (45%), Gaps = 38/449 (8%)

Query: 39  LHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALA 98
           L S  V+T  E    L+ L E+S     +L +A+  F   +    +      N +   + 
Sbjct: 28  LCSKLVNTFSETETKLRSLCEDSNP---QLKNAVSVFQQAVDSGGSLSFAGNNLMATLVR 84

Query: 99  GKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVV 158
            + + V F    + L T   + +FVSL+ L+ CF +M     A   L  +L++ F+ +V 
Sbjct: 85  SRNHEVAFSFYRKMLETDTFI-NFVSLSGLLECFVQMRKTGFAHGVLALMLKRGFAFNVY 143

Query: 159 TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN-VIPNVICYASIIDGLCKDGFVNKVRV 217
               L++GLC   +F +A  L  +      R N ++P+V+ Y ++I G C+   + K   
Sbjct: 144 NYNILLKGLCRNLEFGKAVSLLREM-----RQNSLMPDVVSYNTVIRGFCEGKELEKALQ 198

Query: 218 LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277
           L  +M+G G       +  LI  +C A       G    A+ L +E  +   E       
Sbjct: 199 LANEMQGSGCSWSLVTWGILIDAFCKA-------GKMDEAMGLLKEMKHKGLE------A 245

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           D++ Y S+I   C    +D+ K LF ++  RG  P  + Y++LI G+C +GR+ +A ++F
Sbjct: 246 DLIVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIF 305

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------N 384
             +   G  P+  +Y  LI+    + K +EAL L   M+     P+             +
Sbjct: 306 EFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKD 365

Query: 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG--PEPNVV 442
           S + +A E+   +   +   D   +N L+ GLC    L  A +L   + +     +P+V+
Sbjct: 366 SLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVI 425

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEEKI 471
           ++  +I GLC    + +A D+   + EK+
Sbjct: 426 SFNALIHGLCKGNRLHQALDIYDLLVEKL 454



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 149/351 (42%), Gaps = 50/351 (14%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L +A   F +M+     P + ++  L+  L G       + L   +      P+ V+ NI
Sbjct: 298 LKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTYNI 357

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++N  CK   V+DA   +  + ++   PD +T   L+ GLC +G   EAS L   ++   
Sbjct: 358 IINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLL--YLMLK 415

Query: 188 CRPNVIPNVICYASIIDGLCK-----------------------------------DGFV 212
                 P+VI + ++I GLCK                                    G V
Sbjct: 416 DSSYTDPDVISFNALIHGLCKGNRLHQALDIYDLLVEKLGAGDIVTTNILLNSTLKSGDV 475

Query: 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
           NK   L+  +    I P++  Y ++I  +C       AKG     + L E          
Sbjct: 476 NKAMELWKQISNSKIVPNSDTYTTMIDGFCKTGMLNVAKG-LLCKMRLSE---------- 524

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
               P V  Y  +++SLCK   +D+A  LF +M+     PDV+ ++ +IDG    G I  
Sbjct: 525 --LPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLKAGDIKS 582

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           A  L V +   G  PD  +Y+ LIN + K+  ++EA+S + +MI  G  PD
Sbjct: 583 AESLLVGMSHAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMIDSGFEPD 633



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 105/261 (40%), Gaps = 66/261 (25%)

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M  RG   +V  Y+ L+ G C       A  L   +     +PD  SYNT+I  + + ++
Sbjct: 133 MLKRGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKE 192

Query: 365 VEEALSLYGEM---------ISMGVRPDNSC----ILEAAELFRTLHNTKFELDLTV--- 408
           +E+AL L  EM         ++ G+  D  C    + EA  L + + +   E DL V   
Sbjct: 193 LEKALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTS 252

Query: 409 --------------------------------FNCLVDGLCKSWRLRSAWELFKKLPRYG 436
                                           +N L+ G CK  RL+ A E+F+ +   G
Sbjct: 253 LIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERG 312

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE------------------CLKAI 478
             PNV TYT +I GLC  G  ++A  LL  M +K  E                     A+
Sbjct: 313 VRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADAL 372

Query: 479 ELLHKMAKRYVKPDEITVSIL 499
           E++  M KR  +PD IT + L
Sbjct: 373 EIVELMKKRRTRPDNITYNSL 393


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 115/398 (28%), Positives = 188/398 (47%), Gaps = 72/398 (18%)

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN 213
           SP++VT   LIRG C  G+ T A         F    +V P+V  +  +I GL KDG  +
Sbjct: 59  SPNLVTFKILIRGNCKAGQATRALEFLRALDEF----SVAPDVYIFNFLIHGLFKDGNPD 114

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
           +   LF +M+   + PD F YN++I   C + N E A+       EL EE +   G+   
Sbjct: 115 QAVKLFENMESSRVNPDIFTYNTVISGLCKSGNLEKAR-------ELLEEMIRRGGK--- 164

Query: 274 ICHPDVLSYCSIINS-LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
              PD+++Y ++IN+ +CKD  V++A E+   MK  G  PDV+ Y+S+I   C+ GR+ +
Sbjct: 165 -SAPDIVTYNTLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVE 223

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392
           A ++   +++  C PD  ++NTL++ + K   +  AL +  EM    + PD         
Sbjct: 224 AAEI---LKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPD--------- 271

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
                        +  +  LV+GLC+  +++ A+ L +++ R G  P+V+ YT ++ GLC
Sbjct: 272 -------------VITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLC 318

Query: 453 IEGGIEKAYDLLPDMEEKIRECL-----------------------------KAIELLHK 483
             G IE+A+ L+ +M    RE L                             KA+ L+  
Sbjct: 319 KSGEIEEAHKLVKEMSA--REILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISD 376

Query: 484 MAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
           +  R   PD +T + L + L K     E  +L     S
Sbjct: 377 LVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMAS 414



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/330 (31%), Positives = 163/330 (49%), Gaps = 24/330 (7%)

Query: 81  MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSD 140
           M  +P + +FN+LL            + + E +    +LPD ++  IL+N  C++  V  
Sbjct: 231 MSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQV 290

Query: 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP-----NVIPN 195
           AF  L  I+R+ + PDV+    L+ GLC  G+  EA  L  +  A +        N++P 
Sbjct: 291 AFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPP 350

Query: 196 VICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTS 255
           +  Y  ++ GL KDG ++K   L  D+  RG  PD   YN+LI   C A           
Sbjct: 351 LFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKA-------NRVR 403

Query: 256 AALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV 315
            A +L +E  +    LG  C P+ ++  S++  LC+   VD A  L ++M  +   P+VV
Sbjct: 404 EACDLADEMAS----LG--CFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVV 457

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
           VY+SLIDG C   R+DDA  +  ++  +G   D  +Y  LI S     +V EA+++Y EM
Sbjct: 458 VYTSLIDGLCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEM 517

Query: 376 ISMGVRPDNSC--ILEAAELFRTLHNTKFE 403
           ++ G  PD S    LE A     + N+ FE
Sbjct: 518 VARGFLPDGSTSKTLEEA----AMSNSVFE 543



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 108/419 (25%), Positives = 189/419 (45%), Gaps = 41/419 (9%)

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           +  ++H   +P + +F  L+            +     L+   + PD    N L++   K
Sbjct: 50  YKDLLHSGCSPNLVTFKILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFK 109

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
                 A      +     +PD+ T   +I GLC  G   +A  L  + +    +    P
Sbjct: 110 DGNPDQAVKLFENMESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKS--AP 167

Query: 195 NVICYASIID-GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           +++ Y ++I+ G+CKDG V +   +   MK  G  PD   YNS+I   C A       G 
Sbjct: 168 DIVTYNTLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVA-------GR 220

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
              A E+ +            C PD++++ ++++  CK  ++ +A E+  +M    I+PD
Sbjct: 221 VVEAAEILKTMS---------CSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPD 271

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY- 372
           V+ Y+ L++G C +G++  A  L   I  +G IPD  +Y +L++   K  ++EEA  L  
Sbjct: 272 VITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVK 331

Query: 373 --------GEMISMGVRP-------------DNSCILEAAELFRTLHNTKFELDLTVFNC 411
                    EM+S+ + P              +  I +A  L   L    +  D+  +N 
Sbjct: 332 EMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNT 391

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           L+DGLCK+ R+R A +L  ++   G  PN VT   ++ GLC  G ++ A+ L+ +M  K
Sbjct: 392 LIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRK 450



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/410 (27%), Positives = 177/410 (43%), Gaps = 70/410 (17%)

Query: 120 PDFVSLNILMNC-FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
           PD V+ N L+N   CK   V +A   L  +     +PDV+T   +I  LC+ G+  EA+ 
Sbjct: 167 PDIVTYNTLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAE 226

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           +        C P+++     + +++DG CK G + +   +  +M    I PD   Y  L+
Sbjct: 227 ILK---TMSCSPDLV----TFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILV 279

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
              C         G    A  L EE V      G I  PDV++Y S+++ LCK   +++A
Sbjct: 280 NGLCRV-------GQVQVAFYLLEEIVRQ----GYI--PDVIAYTSLVDGLCKSGEIEEA 326

Query: 299 KELFLDMKSRGI---------IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
            +L  +M +R I         +P +  Y+ ++ G    G I  A  L   + + G +PD 
Sbjct: 327 HKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDV 386

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVF 409
            +YNTLI+   K  +V EA  L  EM S+G  P++                         
Sbjct: 387 VTYNTLIDGLCKANRVREACDLADEMASLGCFPND----------------------VTL 424

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
             +V GLC+  R+  AW L  ++ R    PNVV YT +I GLC    ++ A  +L  M  
Sbjct: 425 GSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMRG 484

Query: 470 K--------IRECL----------KAIELLHKMAKRYVKPDEITVSILEE 501
           +         R+ +          +A+ +  +M  R   PD  T   LEE
Sbjct: 485 QGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVARGFLPDGSTSKTLEE 534



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 150/295 (50%), Gaps = 35/295 (11%)

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           +V  Y  ++D L K G   +   ++ D+   G  P+   +  LIR  C A       G  
Sbjct: 26  DVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKA-------GQA 78

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
           + ALE    F+    E  V   PDV  +  +I+ L KD   D+A +LF +M+S  + PD+
Sbjct: 79  TRALE----FLRALDEFSVA--PDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDI 132

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEG--CIPDTSSYNTLINS-YSKIEKVEEALSL 371
             Y+++I G C  G ++ AR+L   +   G    PD  +YNTLIN+   K   VEEAL +
Sbjct: 133 FTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEEALEI 192

Query: 372 YGEMISMGVRPD----NSCI---------LEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
              M   G  PD    NS I         +EAAE+ +T+  +    DL  FN L+DG CK
Sbjct: 193 LDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTMSCSP---DLVTFNTLLDGFCK 249

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
           +  L  A E+ +++ R    P+V+TYT+++ GLC  G ++ A+ LL   EE +R+
Sbjct: 250 AGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLL---EEIVRQ 301



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 112/241 (46%), Gaps = 36/241 (14%)

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
           C P+++++  +I   CK     +A E    +    + PDV +++ LI G    G  D A 
Sbjct: 58  CSPNLVTFKILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAV 117

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
           KLF ++ES    PD  +YNT+I+   K   +E+A  L  EMI  G               
Sbjct: 118 KLFENMESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRG--------------- 162

Query: 395 RTLHNTKFELDLTVFNCLVD-GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
                 K   D+  +N L++ G+CK   +  A E+   +   GP P+V+TY  +I  LC+
Sbjct: 163 -----GKSAPDIVTYNTLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCV 217

Query: 454 EGGIEKAYDLL------PDMEE---------KIRECLKAIELLHKMAKRYVKPDEITVSI 498
            G + +A ++L      PD+           K     +A+E+L +M +  + PD IT +I
Sbjct: 218 AGRVVEAAEILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTI 277

Query: 499 L 499
           L
Sbjct: 278 L 278



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 74/170 (43%), Gaps = 4/170 (2%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A+   + ++     P + ++N+L+  L           L++ + ++G  P+ V+L  
Sbjct: 367 ISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGS 426

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++   C++  V DA+  +  + RK  +P+VV    LI GLC   +  +A  +        
Sbjct: 427 VVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMRG-- 484

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
               V  +   Y  +I  +   G V +   ++ +M  RG  PD     +L
Sbjct: 485 --QGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVARGFLPDGSTSKTL 532



 Score = 43.5 bits (101), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 18/144 (12%)

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
           ++ D+  +N L+D L KS       +++K L   G  PN+VT+ ++I G C  G   +A 
Sbjct: 23  YKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRAL 82

Query: 462 DLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELL 503
           + L  ++E                  K     +A++L   M    V PD  T + +   L
Sbjct: 83  EFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVISGL 142

Query: 504 NKDENCHECMNLLPSFLSRNQEES 527
            K  N  +   LL   + R  + +
Sbjct: 143 CKSGNLEKARELLEEMIRRGGKSA 166


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 114/464 (24%), Positives = 208/464 (44%), Gaps = 62/464 (13%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A+  F  M   +  P + ++ +L+  L  +      + L + +   G  P  V+ N+
Sbjct: 188 VDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNV 247

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N  CK   +      +  +  K   P+ VT   +I GLC++GK  +A  L  + VA  
Sbjct: 248 LINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASK 307

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C    +PN + Y ++I+GL K G       L   ++ RG + + + Y++LI         
Sbjct: 308 C----VPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKS 363

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           E+A G     +E               C P+++ Y ++I+ LC++  +D+AKE+  +M +
Sbjct: 364 EEAMGLWKKMVEKG-------------CQPNIVVYSALIDGLCREGKLDEAKEILCEMVN 410

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           +G  P+   YSSLI G+   G    A +++  +    C+P+   Y+ LI+   +  K+ E
Sbjct: 411 KGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLRE 470

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           A+ ++  M+  G+RP                      D+  ++ ++ GLC +  +    +
Sbjct: 471 AMMMWTHMLGRGLRP----------------------DVVAYSSMIHGLCNAGSVEVGLK 508

Query: 428 LFKKL--PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMA 485
           LF ++       +P+VVTY +++  LC +  I                   AI+LL+ M 
Sbjct: 509 LFNEMLCQESDSQPDVVTYNILLRALCKQNSIS-----------------HAIDLLNSML 551

Query: 486 KRYVKPDEITVSI----LEELLNKDENCHECMNLLPSFLSRNQE 525
            R   PD IT +I    L E LN  ++  E ++ L   L + Q 
Sbjct: 552 DRGCNPDLITCNIFLNALREKLNPPQDGREFLDELVVRLHKRQR 595



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/370 (28%), Positives = 169/370 (45%), Gaps = 58/370 (15%)

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN 213
           SP+V++   +I+ +C  G    A  +F +     C P+V      Y +++DGLCK+  ++
Sbjct: 169 SPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFT----YCTLMDGLCKEDRID 224

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE-FVNGNGELG 272
           +  +L  +M+  G +P +  +N LI   C        KG+     +L +  F+ G     
Sbjct: 225 EAVLLLDEMQIEGCFPSSVTFNVLINGLC-------KKGDMVRVTKLVDNMFLKG----- 272

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
             C P+ ++Y +IIN LC    +DKA  L   M +   +P+ V Y +LI+G    GR  D
Sbjct: 273 --CVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVD 330

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392
              L  S+E  G   +  +Y+TLI+   K EK EEA+ L+ +M+  G +P          
Sbjct: 331 GVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQP---------- 380

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
                       ++ V++ L+DGLC+  +L  A E+  ++   G  PN  TY+ +I G  
Sbjct: 381 ------------NIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFF 428

Query: 453 IEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHEC 512
             G  +                 KAI +  +MAK    P+EI  S+L   L +D    E 
Sbjct: 429 KTGNSQ-----------------KAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREA 471

Query: 513 MNLLPSFLSR 522
           M +    L R
Sbjct: 472 MMMWTHMLGR 481



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 121/281 (43%), Gaps = 42/281 (14%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L+ A+   + M+  +  P   ++ +L+  L  +   V+ + L   L   G   +  + +
Sbjct: 292 KLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYS 351

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++   K     +A     +++ K   P++V    LI GLC +GK  EA  +  + V  
Sbjct: 352 TLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNK 411

Query: 187 DCRPNV-------------------------------IPNVICYASIIDGLCKDGFVNKV 215
            C PN                                +PN ICY+ +I GLC+DG + + 
Sbjct: 412 GCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREA 471

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
            +++  M GRG+ PD   Y+S+I   C A       G+    L+L  E +    +     
Sbjct: 472 MMMWTHMLGRGLRPDVVAYSSMIHGLCNA-------GSVEVGLKLFNEMLCQESD----S 520

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV 316
            PDV++Y  ++ +LCK   +  A +L   M  RG  PD++ 
Sbjct: 521 QPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLIT 561



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 16/169 (9%)

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
            + SLI+ Y   G      ++F  ++ E  +    ++  +  +Y K    E+A+ L+G M
Sbjct: 66  TFYSLIENYANSGDFGTLFQVFDRMKRERRVFIEKNFILVFRAYGKAHLPEKAIELFGRM 125

Query: 376 IS-----MGVRPDNS---CILEAAELFRTLH--------NTKFELDLTVFNCLVDGLCKS 419
           +        VR  NS    I++     R L          T    ++  FN ++  +CK 
Sbjct: 126 VDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKL 185

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
             +  A E+F+++     EP+V TY  ++ GLC E  I++A  LL +M+
Sbjct: 186 GLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQ 234


>gi|125555763|gb|EAZ01369.1| hypothetical protein OsI_23402 [Oryza sativa Indica Group]
          Length = 619

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 191/420 (45%), Gaps = 52/420 (12%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142
           P P + +FN ++  L  +        L  R+  +G LPD V+ N L++ + K   + +  
Sbjct: 184 PAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVE 243

Query: 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202
             +  + R     DVVT   LI   C  G+   A G F        R  V+ NV+ +++ 
Sbjct: 244 QLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMK----REGVMANVVTFSTF 299

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
           +D  CK+G V +   LF  M+ RG+  + F Y  LI   C A   +DA       + L +
Sbjct: 300 VDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDA-------IVLLD 352

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCK--------DVL-------------------- 294
           E V     L V+      +Y  +++ LCK        DVL                    
Sbjct: 353 EMVRQGVPLNVV------TYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIH 406

Query: 295 -------VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
                   +KA  L  +MK++G+  D+ +Y +LI G C + ++D+A+ L   ++  G  P
Sbjct: 407 GHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEP 466

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLT 407
           +   Y T++++  K  KV EA+++  +++  G +P+N C+ EA +LF  + +    LD  
Sbjct: 467 NYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNNGCLNEAVQLFNEMVHKGMSLDKV 526

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           V+  L+DG  K   L  A+ L  K+   G + ++  YT  I G C    + +A ++  +M
Sbjct: 527 VYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEM 586



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 82/245 (33%), Positives = 125/245 (51%), Gaps = 19/245 (7%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+V ++  +I+ LCK+  + +A+ LF  MK  G +PDVV ++SLIDGY   G +D+  +L
Sbjct: 186 PNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQL 245

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------- 383
              +   GC  D  +YN LIN + K  ++E A   +  M   GV  +             
Sbjct: 246 VEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCK 305

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
              + EA +LF  +      L+   + CL+DG CK+ RL  A  L  ++ R G   NVVT
Sbjct: 306 EGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVT 365

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKM---AKRYVKPDEITVSILE 500
           YTV++ GLC E  + +A D+L  ME   +  ++A ELL+          K  E  + +L 
Sbjct: 366 YTVLVDGLCKERKVAEAEDVLRMME---KAGVRANELLYTTLIHGHFMNKNSEKALGLLS 422

Query: 501 ELLNK 505
           E+ NK
Sbjct: 423 EMKNK 427



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 165/362 (45%), Gaps = 40/362 (11%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY--CCAVN----- 246
           PNV  +  +ID LCK+G + + R LF  MK  G  PD   +NSLI  Y  C  ++     
Sbjct: 186 PNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQL 245

Query: 247 -WEDAKGNTSAALELHEEFVNGNGELGVI--------------CHPDVLSYCSIINSLCK 291
             E  +    A +  +   +N   + G +                 +V+++ + +++ CK
Sbjct: 246 VEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCK 305

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
           + LV +A +LF  M+ RG+  +   Y+ LIDG C  GR+DDA  L   +  +G   +  +
Sbjct: 306 EGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVT 365

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLH 398
           Y  L++   K  KV EA  +   M   GVR +             N    +A  L   + 
Sbjct: 366 YTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMK 425

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
           N   ELD++++  L+ GLC   +L  A  L  K+   G EPN + YT M+      G + 
Sbjct: 426 NKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVP 485

Query: 459 KAYDLLPDMEEKIRE----CL-KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECM 513
           +A  +L  + +   +    CL +A++L ++M  + +  D++  + L +   K  N H+  
Sbjct: 486 EAIAMLQKILDSGFQPNNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAF 545

Query: 514 NL 515
            L
Sbjct: 546 AL 547



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 93/398 (23%), Positives = 156/398 (39%), Gaps = 79/398 (19%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E EL +A   F+ M  M   P + +FNSL+              L E +   G   D V+
Sbjct: 201 EGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVT 260

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF- 183
            N L+NCFCK   +  A+     + R+    +VVT    +   C +G   EA  LF +  
Sbjct: 261 YNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMR 320

Query: 184 --------VAFDC----------------------RPNVIPNVICYASIIDGLCKDGFVN 213
                     + C                      R  V  NV+ Y  ++DGLCK+  V 
Sbjct: 321 VRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVA 380

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA--------LELHEEFV 265
           +   +   M+  G+  +  +Y +LI  +    N E A G  S          + L+   +
Sbjct: 381 EAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALI 440

Query: 266 NG----------------NGELGVICHPDVLSYCSIINS------------LCKDVL--- 294
            G                  E G+   P+ + Y +++++            + + +L   
Sbjct: 441 QGLCNVHKLDEAKSLLTKMDESGL--EPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSG 498

Query: 295 -------VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
                  +++A +LF +M  +G+  D VVY++L+DGY   G + DA  L   +   G   
Sbjct: 499 FQPNNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQL 558

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
           D   Y   I+ +  +  + EA  ++ EMI  G+ PD +
Sbjct: 559 DLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRA 596


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 126/489 (25%), Positives = 216/489 (44%), Gaps = 100/489 (20%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGC--------- 162
           R+  + L P+ ++ N L+N   +       +++     + +FS DV+ LG          
Sbjct: 164 RMKRLHLKPNLLTCNTLINALVRYPSKPSVYLS-----KAIFS-DVIKLGVKVNTNTFNI 217

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           LI G C++ K +EA GL  K   F C     P+ + Y +I+D LCK G +N+ R L LDM
Sbjct: 218 LIYGCCIENKLSEAIGLIGKMKDFSC----FPDNVSYNTILDVLCKKGKLNEARDLLLDM 273

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
           K  G+ P+   +N L+  Y C + W          L+   + ++   +  V+  PDV +Y
Sbjct: 274 KNNGLLPNRNTFNILVSGY-CKLGW----------LKEAAQVIDLMAQNNVL--PDVWTY 320

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG------------------- 323
             +I  LCKD  +D+A  L  +M++  ++PDVV Y++LI+G                   
Sbjct: 321 NMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEG 380

Query: 324 ----------------YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
                           Y   G++D+A      +E  G  PD  ++NTLIN Y K  ++ E
Sbjct: 381 KGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSE 440

Query: 368 ALSLYGEMISMGVRPDNSCIL--------------EAAELFRTLHNTKFELDLTVFNCLV 413
           A  +  EM   G++  NS  L              +A +L  +     + +D   +  L+
Sbjct: 441 AFRMMDEMSRKGLKM-NSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLI 499

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE---- 469
            G  K  +   A +L+ ++      P+++TY  MI GLC  G  +++ D L ++ E    
Sbjct: 500 MGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLV 559

Query: 470 --------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
                         +  +  KA +  +KM K+  KPD  T +IL   L  +    + + L
Sbjct: 560 PDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKL 619

Query: 516 LPSFLSRNQ 524
             +++S+ +
Sbjct: 620 FNTWISKGK 628



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 120/450 (26%), Positives = 192/450 (42%), Gaps = 57/450 (12%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E +L++A+     M      P   S+N++L  L  K        L   +   GLLP+  +
Sbjct: 225 ENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNT 284

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            NIL++ +CK+  + +A   +  + +    PDV T   LI GLC  GK  EA  L  +  
Sbjct: 285 FNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEME 344

Query: 185 AFDCRPNVI-------------------------------PNVICYASIIDGLCKDGFVN 213
                P+V+                               PN + Y  ++    K+G ++
Sbjct: 345 NLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMD 404

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
                   M+  G  PD   +N+LI  YC A       G  S A  + +E      ++  
Sbjct: 405 NAGNELRKMEESGFSPDCVTFNTLINGYCKA-------GRLSEAFRMMDEMSRKGLKMNS 457

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
           +      +  +I+++LC +  +D A +L      RG   D V Y +LI GY   G+  +A
Sbjct: 458 V------TLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEA 511

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCIL- 388
            KL+  ++ +  IP   +YNT+I       K ++++    E++  G+ PD    N+ IL 
Sbjct: 512 MKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILG 571

Query: 389 --------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
                   +A +    +    F+ DL   N L+ GLC    L  A +LF      G   +
Sbjct: 572 YCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAID 631

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            VTY  +I GLC E   E+A+DLL +MEEK
Sbjct: 632 AVTYNTIISGLCKEDRFEEAFDLLAEMEEK 661



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/401 (25%), Positives = 174/401 (43%), Gaps = 64/401 (15%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           ++   G  PD V+ N L+N +CK   +S+AF  +  + RK    + VTL  ++  LC + 
Sbjct: 412 KMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGER 471

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
           K  +A     K ++   +     + + Y ++I G  KDG   +   L+ +MK + I P  
Sbjct: 472 KLDDA----YKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSI 527

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
             YN++I   C +       G T  +++   E +    E G++  PD  +Y +II   C+
Sbjct: 528 ITYNTMIGGLCHS-------GKTDQSIDKLNELL----ESGLV--PDETTYNTIILGYCR 574

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
           +  V+KA +    M  +   PD+   + L+ G C  G +D A KLF +  S+G   D  +
Sbjct: 575 EGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVT 634

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNC 411
           YNT+I+   K ++ EEA  L  EM    + PD  C                      +N 
Sbjct: 635 YNTIISGLCKEDRFEEAFDLLAEMEEKKLGPD--CY--------------------TYNA 672

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGP-----------------------EPNVVTYTVMI 448
           ++  L  + R++ A E   ++   G                        +PN VT++  I
Sbjct: 673 ILSALADAGRMKEAEEFMSRIVEQGKLQDQTISLNKRKIESSSETSQESDPNSVTFSEQI 732

Query: 449 CGLCIEGGIEKAYDLLPDMEEKIRECLKA--IELLHKMAKR 487
             LC +G  + A  ++ +  +K     K+  I L+  + KR
Sbjct: 733 NELCTQGKYKDAMHMVQESTQKGITLHKSTYISLMEGLIKR 773



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/380 (22%), Positives = 174/380 (45%), Gaps = 21/380 (5%)

Query: 76  NYMIHMQPTPFMP---SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCF 132
           N +  M+ + F P   +FN+L+              + + ++  GL  + V+LN +++  
Sbjct: 408 NELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTL 467

Query: 133 CKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNV 192
           C    + DA+  L    ++ +  D V+ G LI G    GK  EA  L+ +         +
Sbjct: 468 CGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMK----EKEI 523

Query: 193 IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252
           IP++I Y ++I GLC  G  ++      ++   G+ PD   YN++I  YC        +G
Sbjct: 524 IPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYC-------REG 576

Query: 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
               A + H + V  + +      PD+ +   ++  LC + ++DKA +LF    S+G   
Sbjct: 577 QVEKAFQFHNKMVKKSFK------PDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAI 630

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
           D V Y+++I G C   R ++A  L   +E +   PD  +YN ++++ +   +++EA    
Sbjct: 631 DAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEAEEFM 690

Query: 373 GEMISMGVRPDNSCILEAAEL-FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
             ++  G   D +  L   ++   +  + + + +   F+  ++ LC   + + A  + ++
Sbjct: 691 SRIVEQGKLQDQTISLNKRKIESSSETSQESDPNSVTFSEQINELCTQGKYKDAMHMVQE 750

Query: 432 LPRYGPEPNVVTYTVMICGL 451
             + G   +  TY  ++ GL
Sbjct: 751 STQKGITLHKSTYISLMEGL 770



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 101/254 (39%), Gaps = 69/254 (27%)

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS---------------- 358
           V+  + I  Y    R   A ++F  ++     P+  + NTLIN+                
Sbjct: 140 VILDTSIGAYVACNRPHHAAQIFNRMKRLHLKPNLLTCNTLINALVRYPSKPSVYLSKAI 199

Query: 359 YSKI----------------------EKVEEALSLYGEMISMGVRPDN---SCIL----- 388
           +S +                       K+ EA+ L G+M      PDN   + IL     
Sbjct: 200 FSDVIKLGVKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCK 259

Query: 389 -----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                EA +L   + N     +   FN LV G CK   L+ A ++   + +    P+V T
Sbjct: 260 KGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWT 319

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEE------------KIREC------LKAIELLHKMA 485
           Y ++I GLC +G I++A+ L  +ME              I  C      LK  EL+ KM 
Sbjct: 320 YNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKME 379

Query: 486 KRYVKPDEITVSIL 499
            + VKP+ +T +++
Sbjct: 380 GKGVKPNAVTYNVV 393


>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
 gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
          Length = 428

 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 120/399 (30%), Positives = 177/399 (44%), Gaps = 65/399 (16%)

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           D    N L+   CK      A   L  +    +   VVT   LI GLC  G    A  L 
Sbjct: 9   DAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALL 68

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            K     C PNV+     Y ++IDGLCK    +        M   G  PD   YNSLI  
Sbjct: 69  QKMADAGCAPNVVT----YTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHG 124

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
            C A   +DA       L L E  +    E G I  PDV++Y + I+ LCK   +DK  E
Sbjct: 125 LCMANRMDDA------GLVLQELMI----ESGRI--PDVVTYNTFISGLCKAGKLDKGLE 172

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           +  +M   GI PDVV + S+I G C   RIDDA ++F  +   GC+PD+ +Y+ ++++ S
Sbjct: 173 MLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLS 232

Query: 361 ---KIEKVEEAL------------SLYGEMISMGVRPDN--------------SCILEA- 390
              +++ VEE L            + Y  +I   +R  +               C++E  
Sbjct: 233 RANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVY 292

Query: 391 ---AELFRTLHNTKFEL---------------DLTVFNCLVDGLCKSWRLRSAWELFKKL 432
              A +     + KF L               +L  +N ++DGLCKS  +  AW+L +K+
Sbjct: 293 THNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKM 352

Query: 433 PRYG-PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
              G  +P+V+ +  +I G C  G + +A  LL +M+ K
Sbjct: 353 LDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMKAK 391



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 100/405 (24%), Positives = 171/405 (42%), Gaps = 63/405 (15%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           KSG+++   AL     M      P + ++ +L+  L   +   + I   +R+   G  PD
Sbjct: 57  KSGDLDAAQAL--LQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPD 114

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFS-PDVVTLGCLIRGLCMQGKFTEASGLF 180
            V+ N L++  C    + DA + L  ++ +    PDVVT    I GLC  GK  +   + 
Sbjct: 115 LVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEML 174

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN----- 235
            +      R  + P+V+ + SII GLCK   ++    +F  M  RG  PD+  Y+     
Sbjct: 175 EEMD----RGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDN 230

Query: 236 -----------------------SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
                                  +L   Y   ++     G+  +A   +E+ +       
Sbjct: 231 LSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQAMEAG---- 286

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
             C  +V ++ + I +LC+      AK + L M   G +P+++ Y+ +IDG C  G +DD
Sbjct: 287 --CVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDD 344

Query: 333 ARKLFVSIESEGCI-PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAA 391
           A KL   +   GC  PD   +NTLI+ + K  ++ +A  L  EM     +  N C+    
Sbjct: 345 AWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEM-----KAKNICV---- 395

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
                        D+  +N ++DG  K   L+ A  L +++   G
Sbjct: 396 ------------PDVVTYNTMIDGQSKFGSLKQAKLLLEEMQAVG 428



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 126/285 (44%), Gaps = 53/285 (18%)

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
           M  R    DA +YN+LI   C       A+    A   LH    NG           V++
Sbjct: 1   MASRHFRLDAAIYNTLIAGLC------KARKPRHALELLHVMAANGY-------DASVVT 47

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y ++I+ LCK   +D A+ L   M   G  P+VV Y++LIDG C   R  DA +    + 
Sbjct: 48  YTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRML 107

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEA-LSLYGEMISMGVRPDNSCILEAAELFRTLHNT 400
             GC PD  +YN+LI+      ++++A L L   MI  G  PD                 
Sbjct: 108 RSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPD----------------- 150

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
                +  +N  + GLCK+ +L    E+ +++ R G  P+VVT+  +I GLC    I+ A
Sbjct: 151 -----VVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDA 205

Query: 461 YDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505
           + +   M E  R C+               PD +T SI+ + L++
Sbjct: 206 FQVFKGMLE--RGCV---------------PDSLTYSIMLDNLSR 233



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 128/291 (43%), Gaps = 38/291 (13%)

Query: 199 YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL 258
           Y ++I GLCK         L   M   G       Y +LI   C         G+  AA 
Sbjct: 13  YNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLC-------KSGDLDAAQ 65

Query: 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS 318
            L ++  +        C P+V++Y ++I+ LCK      A +    M   G  PD+V Y+
Sbjct: 66  ALLQKMADAG------CAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYN 119

Query: 319 SLIDGYCLMGRIDDARKLFVSIESE-GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           SLI G C+  R+DDA  +   +  E G IPD  +YNT I+   K  K+++ L +  EM  
Sbjct: 120 SLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDR 179

Query: 378 MGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
            G+ PD                      +  F  ++ GLCK+ R+  A+++FK +   G 
Sbjct: 180 GGISPD----------------------VVTFCSIISGLCKANRIDDAFQVFKGMLERGC 217

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAI--ELLHKMAK 486
            P+ +TY++M+  L     ++   ++L  M +     L A    L+H + +
Sbjct: 218 VPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIR 268



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 102/254 (40%), Gaps = 40/254 (15%)

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           D   Y ++I  LCK      A EL   M + G    VV Y++LIDG C  G +D A+ L 
Sbjct: 9   DAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALL 68

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397
             +   GC P+  +Y  LI+   K  +  +A+     M+  G  PD              
Sbjct: 69  QKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPD-------------- 114

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP-RYGPEPNVVTYTVMICGLCIEGG 456
                   L  +N L+ GLC + R+  A  + ++L    G  P+VVTY   I GLC  G 
Sbjct: 115 --------LVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGK 166

Query: 457 IEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           ++K                  +E+L +M +  + PD +T   +   L K     +   + 
Sbjct: 167 LDKG-----------------LEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVF 209

Query: 517 PSFLSRNQEESKLT 530
              L R      LT
Sbjct: 210 KGMLERGCVPDSLT 223


>gi|225464790|ref|XP_002268064.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
           mitochondrial [Vitis vinifera]
          Length = 817

 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 191/422 (45%), Gaps = 80/422 (18%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKV-FSPDVVTLGCLIRGLCMQGKFTE 175
           G +P  +S N LMN   +  G  D  VA+ R L+++  +P+  T G  I+ LC +G F E
Sbjct: 187 GFVPHIMSCNFLMNRLIEH-GKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEE 245

Query: 176 ASGLFTKFVAFDCRPNVIP-------------------------------NVICYASIID 204
           A  +F +       PN +                                +   Y ++I 
Sbjct: 246 AVDVFREMEEAGVNPNAVTCSTYIEGLCSHKRSDLGYEALRALRAANWPIDTFAYTAVIR 305

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           G C +  + +   +F+DM   GI PD ++Y +LI  YC A       GN   A+ LH + 
Sbjct: 306 GFCSEMKLKEAEDVFIDMVNEGIAPDGYIYGALIHAYCKA-------GNLLQAVALHNDM 358

Query: 265 VNGNG----------------ELGVICHP--------------DVLSYCSIINSLCKDVL 294
           V+ NG                E+G+                  D + Y  ++++LCK   
Sbjct: 359 VS-NGIKTNCVIVSSILQCLCEMGMASEVVDQFKEFRDSGIFLDEVLYNIVVDALCKLGK 417

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           V++A EL  +MK R +  DVV Y++LI GYCL G++ DA+ +F  ++  G  PD  +YN 
Sbjct: 418 VEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTYNI 477

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNS---------CILEAAELFRTLHNTKFELD 405
           L+  +S+    +EAL L   + + G++P+++         C+    +      NT  +  
Sbjct: 478 LVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLCMAGKVKEAEAFLNTLEDKC 537

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
           L  ++ +VDG CK+   R A+ELF +L + G      +   ++  LC+EG  +KA  LL 
Sbjct: 538 LENYSAMVDGYCKANFTRKAYELFSRLSKQGILVKKKSCFKLLSSLCMEGEYDKALILLE 597

Query: 466 DM 467
            M
Sbjct: 598 RM 599



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 113/438 (25%), Positives = 196/438 (44%), Gaps = 61/438 (13%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G+VE  +A+   N M   + +  +  + +L+     +   V+   + E +   G+ PD
Sbjct: 414 KLGKVE--EAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIEPD 471

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+ NIL+  F +     +A   L  I  +   P+  T   +I GLCM GK  EA   F 
Sbjct: 472 IVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLCMAGKVKEAEA-FL 530

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
             +   C  N       Y++++DG CK  F  K   LF  +  +GI         L+   
Sbjct: 531 NTLEDKCLEN-------YSAMVDGYCKANFTRKAYELFSRLSKQGILVKKKSCFKLLSSL 583

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C        +G    AL L E        L +   P+ + Y  +I + C+D  + +A+ +
Sbjct: 584 C-------MEGEYDKALILLERM------LALDVEPNQIMYGKLIGAFCRDGDMKRAQLV 630

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F  +  RGI PDV+ Y+ +I+GYC +  + +AR +F  ++  G  PD  +Y  +++ +SK
Sbjct: 631 FDMLVERGITPDVITYTMMINGYCRVNCLREARDIFNDMKERGIKPDVITYTVVLDGHSK 690

Query: 362 I---------------EKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406
           +               E+  +A   + EM  MG++PD  C                    
Sbjct: 691 VNLKMARSLQFSKGSEEEKMDASPFWSEMKEMGIKPDVVC-------------------- 730

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             +  L+D  CK+  L+ A  L+ ++   G +P++VTYT ++   C  G +++A  L+ +
Sbjct: 731 --YTVLIDSHCKTNNLQDAINLYDEMIARGLQPDIVTYTALLSSCCSRGDMDRAITLVNE 788

Query: 467 MEEK-IRECLKAIELLHK 483
           M  K I    +A+ +LH+
Sbjct: 789 MSFKGIEPDSRAMSVLHR 806



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 174/377 (46%), Gaps = 55/377 (14%)

Query: 157 VVTLGCLIRGLCMQGKFTEA-SGLF-TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
           ++ L  L++     G F EA   LF TK      R   +P+++    +++ L + G ++ 
Sbjct: 157 ILVLDMLVKAYVRVGMFDEAIDALFQTK------RRGFVPHIMSCNFLMNRLIEHGKIDM 210

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
              ++  +K  G+ P+ + Y   I+  C        KGN   A+++  E      E GV 
Sbjct: 211 AVAIYRHLKRLGLNPNDYTYGIFIKALC-------RKGNFEEAVDVFREM----EEAGV- 258

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
            +P+ ++  + I  LC     D   E    +++     D   Y+++I G+C   ++ +A 
Sbjct: 259 -NPNAVTCSTYIEGLCSHKRSDLGYEALRALRAANWPIDTFAYTAVIRGFCSEMKLKEAE 317

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL------ 388
            +F+ + +EG  PD   Y  LI++Y K   + +A++L+ +M+S G++ +  C++      
Sbjct: 318 DVFIDMVNEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVSNGIKTN--CVIVSSILQ 375

Query: 389 ---------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
                    E  + F+   ++   LD  ++N +VD LCK  ++  A EL  ++       
Sbjct: 376 CLCEMGMASEVVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSL 435

Query: 440 NVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           +VV YT +I G C++G +  A ++  +M+E                 R ++PD +T +IL
Sbjct: 436 DVVHYTTLIAGYCLQGKLVDAKNMFEEMKE-----------------RGIEPDIVTYNIL 478

Query: 500 EELLNKDENCHECMNLL 516
               +++    E + LL
Sbjct: 479 VGGFSRNGLKKEALELL 495



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 99/460 (21%), Positives = 190/460 (41%), Gaps = 67/460 (14%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ PD      L++ +CK   +  A      ++      + V +  +++ LC  G  +E 
Sbjct: 327 GIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVSNGIKTNCVIVSSILQCLCEMGMASEV 386

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
              F +F        +  + + Y  ++D LCK G V +   L  +MKGR +  D   Y +
Sbjct: 387 VDQFKEFRD----SGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTT 442

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI  YC      DAK        + EE      E G+   PD+++Y  ++    ++ L  
Sbjct: 443 LIAGYCLQGKLVDAKN-------MFEEM----KERGI--EPDIVTYNILVGGFSRNGLKK 489

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A EL   + ++G+ P+   ++ +I+G C+ G++ +A     ++E + C+ +   Y+ ++
Sbjct: 490 EALELLDCIGTQGLKPNSATHNRIIEGLCMAGKVKEAEAFLNTLEDK-CLEN---YSAMV 545

Query: 357 NSYSKIEKVEEALSLYGEMISMGVR-PDNSCIL------------EAAELFRTLHNTKFE 403
           + Y K     +A  L+  +   G+     SC              +A  L   +     E
Sbjct: 546 DGYCKANFTRKAYELFSRLSKQGILVKKKSCFKLLSSLCMEGEYDKALILLERMLALDVE 605

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            +  ++  L+   C+   ++ A  +F  L   G  P+V+TYT+MI G C    + +A D+
Sbjct: 606 PNQIMYGKLIGAFCRDGDMKRAQLVFDMLVERGITPDVITYTMMINGYCRVNCLREARDI 665

Query: 464 LPDMEEK---------------------------------IRECLKAIELLHKMAKRYVK 490
             DM+E+                                   E + A     +M +  +K
Sbjct: 666 FNDMKERGIKPDVITYTVVLDGHSKVNLKMARSLQFSKGSEEEKMDASPFWSEMKEMGIK 725

Query: 491 PDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           PD +  ++L +   K  N  + +NL    ++R  +   +T
Sbjct: 726 PDVVCYTVLIDSHCKTNNLQDAINLYDEMIARGLQPDIVT 765



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 123/263 (46%), Gaps = 12/263 (4%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L  RL+  G+L    S   L++  C       A + L R+L     P+ +  G LI   C
Sbjct: 560 LFSRLSKQGILVKKKSCFKLLSSLCMEGEYDKALILLERMLALDVEPNQIMYGKLIGAFC 619

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
             G    A  +F   V       + P+VI Y  +I+G C+   + + R +F DMK RGI 
Sbjct: 620 RDGDMKRAQLVFDMLV----ERGITPDVITYTMMINGYCRVNCLREARDIFNDMKERGIK 675

Query: 229 PDAFVYNSLIRVYC-----CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
           PD   Y  ++  +       A + + +KG+    ++    F +   E+G+   PDV+ Y 
Sbjct: 676 PDVITYTVVLDGHSKVNLKMARSLQFSKGSEEEKMD-ASPFWSEMKEMGI--KPDVVCYT 732

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
            +I+S CK   +  A  L+ +M +RG+ PD+V Y++L+   C  G +D A  L   +  +
Sbjct: 733 VLIDSHCKTNNLQDAINLYDEMIARGLQPDIVTYTALLSSCCSRGDMDRAITLVNEMSFK 792

Query: 344 GCIPDTSSYNTLINSYSKIEKVE 366
           G  PD+ + + L     K  KV+
Sbjct: 793 GIEPDSRAMSVLHRGILKARKVQ 815



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 112/282 (39%), Gaps = 38/282 (13%)

Query: 218 LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL--HEEFVNGNGELGVIC 275
            F  +K  G   +   Y +LIRV C    W   +   S   E+   +E V G     +  
Sbjct: 83  FFTQLKESGFQHNVDTYAALIRVLC---RWRLERKLQSLLSEIVGSKESVLG---FDITA 136

Query: 276 HPDVLSYC--------SIINSLCKDVLV---------DKAKELFLDMKSRGIIPDVVVYS 318
             DVL           S +  L  D+LV         D+A +     K RG +P ++  +
Sbjct: 137 LFDVLREGGGEVEGEHSSVLILVLDMLVKAYVRVGMFDEAIDALFQTKRRGFVPHIMSCN 196

Query: 319 SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
            L++     G+ID A  ++  ++  G  P+  +Y   I +  +    EEA+ ++ EM   
Sbjct: 197 FLMNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEEAVDVFREMEEA 256

Query: 379 GVRPDN---SCILEAA----------ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
           GV P+    S  +E            E  R L    + +D   +  ++ G C   +L+ A
Sbjct: 257 GVNPNAVTCSTYIEGLCSHKRSDLGYEALRALRAANWPIDTFAYTAVIRGFCSEMKLKEA 316

Query: 426 WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            ++F  +   G  P+   Y  +I   C  G + +A  L  DM
Sbjct: 317 EDVFIDMVNEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDM 358


>gi|242094006|ref|XP_002437493.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
 gi|241915716|gb|EER88860.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
          Length = 1039

 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 122/458 (26%), Positives = 194/458 (42%), Gaps = 87/458 (18%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKV-FSPDVVTLGCLIRGL 167
           L  +L   GLLPD V+ N ++  +CK   ++ A     R+LR+     D  T   L+ G 
Sbjct: 170 LYSQLVQEGLLPDTVTYNTMIMAYCKEGSLAIAHRYF-RLLRESGMEMDTYTCNALLLGY 228

Query: 168 CMQGKFTEASGLFTKFVAFDCRPNVI-------------------------------PNV 196
           C  G   +A  L        CR N                                 PN+
Sbjct: 229 CRTGDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLLMMLQDGCSPNL 288

Query: 197 ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSA 256
             Y  +I GLCK+G ++  RVL  +M  RG+ P  + YN++I  YC +   +DA G  + 
Sbjct: 289 HTYTLLIRGLCKEGRIHDARVLLDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDALGIKT- 347

Query: 257 ALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV 316
                   + GNG     C+PD  +Y S+I+ LC     D+A+EL     +RG  P V+ 
Sbjct: 348 -------LMEGNG-----CNPDDWTYNSLIHGLCGGK-PDEAEELLNGAIARGFSPTVIT 394

Query: 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
           ++++I+GYC   +IDDA ++   + S  C  D  +Y  LI+   K  +++EA     E+ 
Sbjct: 395 FTNIINGYCKAEKIDDALRVKSIMISSKCKLDLQAYGVLISVLIKKHRLKEAKDTLNEIF 454

Query: 377 SMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
           + G+ P                      ++ ++  ++D  CK  ++ +A E+FK     G
Sbjct: 455 ANGLSP----------------------NVVIYTSIIDAYCKVGKVGAALEVFKLTEHEG 492

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAI 478
             PN  TY+ +I GL  +  + KA  L+  M+E                  K  E   A 
Sbjct: 493 CRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAF 552

Query: 479 ELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
            L   M +  + PDE   ++L + L K     E  + L
Sbjct: 553 RLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFL 590



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 118/437 (27%), Positives = 194/437 (44%), Gaps = 64/437 (14%)

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           S  IL+   C+   V +A V L  +L+   SP++ T   LIRGLC +G+  +A  L  + 
Sbjct: 255 SYTILIQGLCETRCVREALVLLLMMLQDGCSPNLHTYTLLIRGLCKEGRIHDARVLLDEM 314

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
                R  V+P+V  Y ++IDG CK G +     +   M+G G  PD + YNSLI   C 
Sbjct: 315 P----RRGVVPSVWTYNAMIDGYCKSGRLKDALGIKTLMEGNGCNPDDWTYNSLIHGLCG 370

Query: 244 A--------VNWEDAKGNTSAALELHEEFVNGNGELGVI--------------CHPDVLS 281
                    +N   A+G +   +      +NG  +   I              C  D+ +
Sbjct: 371 GKPDEAEELLNGAIARGFSPTVITF-TNIINGYCKAEKIDDALRVKSIMISSKCKLDLQA 429

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y  +I+ L K   + +AK+   ++ + G+ P+VV+Y+S+ID YC +G++  A ++F   E
Sbjct: 430 YGVLISVLIKKHRLKEAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFKLTE 489

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK 401
            EGC P+  +Y++LI    + +K+ +A++L  +M   G+ P                   
Sbjct: 490 HEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITP------------------- 530

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
               +  +  L+ G CK     +A+ LF+ + + G  P+   Y V+   LC  G  E+AY
Sbjct: 531 ---GVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAY 587

Query: 462 DL---------------LPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
                            L D   K      A  L+ KM     K D  T S+L + L K 
Sbjct: 588 SFLVKKGVVLTKVTYTSLVDGFSKAGNTEFAAALIEKMVNEGCKADSHTYSVLLQALCKQ 647

Query: 507 ENCHECMNLLPSFLSRN 523
           +  +E +++L     R 
Sbjct: 648 KKLNEALSILDQMTLRG 664



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 112/407 (27%), Positives = 169/407 (41%), Gaps = 68/407 (16%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL P+ V    +++ +CK+  V  A         +   P+  T   LI GL    K  +A
Sbjct: 457 GLSPNVVIYTSIIDAYCKVGKVGAALEVFKLTEHEGCRPNAWTYSSLIYGLIQDQKLHKA 516

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L TK         + P VI Y ++I G CK    +    LF  M+  G+ PD   YN 
Sbjct: 517 MALITKMQ----EDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNV 572

Query: 237 LIRVYCCAVNWEDA-------------------------KGNTSAALELHEEFVNGNGEL 271
           L    C +   E+A                          GNT  A  L E+ VN     
Sbjct: 573 LTDALCKSGRAEEAYSFLVKKGVVLTKVTYTSLVDGFSKAGNTEFAAALIEKMVNEG--- 629

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
              C  D  +Y  ++ +LCK   +++A  +   M  RG+  ++V Y+ +I      G+ D
Sbjct: 630 ---CKADSHTYSVLLQALCKQKKLNEALSILDQMTLRGVKGNIVAYTIIISEMIKEGKHD 686

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------- 383
            A+ +F  + S G  P   +Y   I+SY KI ++EEA  L GEM   GV PD        
Sbjct: 687 HAKSMFNEMISSGHKPSAITYTVFISSYCKIGRIEEAGHLIGEMERNGVAPDVVTYNVFI 746

Query: 384 NSC----ILEAAELFRTLHNT----------------KFELDLTVFNC-LVD--GLCKSW 420
           N C     ++ A  F TL                   K  L +++ N   VD  G+    
Sbjct: 747 NGCGHMGYMDCA--FSTLKRMIDASCEPNYWTYWLLLKHFLKMSLANAHYVDTSGMWNWI 804

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +L + W+L +++ ++G  P  VTY+ +I G C    +E+A  LL  M
Sbjct: 805 KLDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLLDHM 851



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 108/474 (22%), Positives = 171/474 (36%), Gaps = 96/474 (20%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L+ A+     M     TP + ++ +L+     K  + N   L E +   GL PD  + N
Sbjct: 512 KLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYN 571

Query: 127 ILMNCFCKMIGVSDAF---VALGRILRKV--------FS--------------------- 154
           +L +  CK     +A+   V  G +L KV        FS                     
Sbjct: 572 VLTDALCKSGRAEEAYSFLVKKGVVLTKVTYTSLVDGFSKAGNTEFAAALIEKMVNEGCK 631

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
            D  T   L++ LC Q K  EA  +  +         V  N++ Y  II  + K+G  + 
Sbjct: 632 ADSHTYSVLLQALCKQKKLNEALSILDQMTL----RGVKGNIVAYTIIISEMIKEGKHDH 687

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA--------KGNTSAALELHEEFVN 266
            + +F +M   G  P A  Y   I  YC     E+A        +   +  +  +  F+N
Sbjct: 688 AKSMFNEMISSGHKPSAITYTVFISSYCKIGRIEEAGHLIGEMERNGVAPDVVTYNVFIN 747

Query: 267 GNGELGVI--------------CHPDVLSYCSIINSLCKDVL----------------VD 296
           G G +G +              C P+  +Y  ++    K  L                +D
Sbjct: 748 GCGHMGYMDCAFSTLKRMIDASCEPNYWTYWLLLKHFLKMSLANAHYVDTSGMWNWIKLD 807

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
              +L   M   G+ P  V YSS+I G+C   R+++A  L   +  +   P+   Y  LI
Sbjct: 808 TVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLI 867

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
                I+  E+A S    MI  G +P                       L  ++ L+ GL
Sbjct: 868 KCCCDIKLFEKAASFVTNMIECGFQP----------------------HLESYHYLITGL 905

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           C       A  LF  L       N V + ++  GL   G ++    LL  ME +
Sbjct: 906 CDEGDYDKAKALFCDLLEMDYNHNEVAWKILNDGLLKAGHVDICSQLLSAMENR 959



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 116/270 (42%), Gaps = 35/270 (12%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSD-AFVALGRILRKVFSPDVVTLGCLIRGLC----MQG 171
           G+ PD V+ N+ +N  C  +G  D AF  L R++     P+  T   L++          
Sbjct: 734 GVAPDVVTYNVFING-CGHMGYMDCAFSTLKRMIDASCEPNYWTYWLLLKHFLKMSLANA 792

Query: 172 KFTEASGLFTKFVAFDC---------RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
            + + SG++  ++  D          +  + P  + Y+SII G CK   + +  VL   M
Sbjct: 793 HYVDTSGMWN-WIKLDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLLDHM 851

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
            G+ I P+  +Y  LI+  CC +             E    FV    E G    P + SY
Sbjct: 852 LGKDISPNEEIYTMLIKC-CCDIK----------LFEKAASFVTNMIECGF--QPHLESY 898

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
             +I  LC +   DKAK LF D+       + V +  L DG    G +D   +L  ++E+
Sbjct: 899 HYLITGLCDEGDYDKAKALFCDLLEMDYNHNEVAWKILNDGLLKAGHVDICSQLLSAMEN 958

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
             C  D+ +Y+ + N+      + EA  +Y
Sbjct: 959 RHCRIDSETYSMVTNN------IHEASGMY 982



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 87/196 (44%), Gaps = 13/196 (6%)

Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
           + SL +  + +   +L+  +   G++PD V Y+++I  YC  G +  A + F  +   G 
Sbjct: 155 LRSLLRFDMTEHMGKLYSQLVQEGLLPDTVTYNTMIMAYCKEGSLAIAHRYFRLLRESGM 214

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP-------------DNSCILEAAE 392
             DT + N L+  Y +   + +A  L   M  MG R              +  C+ EA  
Sbjct: 215 EMDTYTCNALLLGYCRTGDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALV 274

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
           L   +       +L  +  L+ GLCK  R+  A  L  ++PR G  P+V TY  MI G C
Sbjct: 275 LLLMMLQDGCSPNLHTYTLLIRGLCKEGRIHDARVLLDEMPRRGVVPSVWTYNAMIDGYC 334

Query: 453 IEGGIEKAYDLLPDME 468
             G ++ A  +   ME
Sbjct: 335 KSGRLKDALGIKTLME 350


>gi|357470109|ref|XP_003605339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506394|gb|AES87536.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 472

 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 194/385 (50%), Gaps = 43/385 (11%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++++L+  L  +      + L + +   G  P+ V+ N+L++  CK   +S A   +  +
Sbjct: 37  TYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNM 96

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
             K   P+ VT   L+ GLC++GK  +A  L  + VA  C    +PN I + +++DG  K
Sbjct: 97  FLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKC----VPNDITFGTLVDGFVK 152

Query: 209 DG-FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
            G  ++ VRVL + ++ +G   + F Y+SLI        +++ KG     ++L +E V  
Sbjct: 153 HGRALDGVRVL-VSLEEKGYRGNEFSYSSLISGL-----FKEGKG--EHGMQLWKEMV-- 202

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
             E G  C P+ + Y ++I+ LC++   D+AKE  ++MK++G  P+   YSSL+ GY   
Sbjct: 203 --EKG--CKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEA 258

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
           G I  A  ++  +    C      Y+ LIN   K  K++EAL ++ +M+S G++      
Sbjct: 259 GDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQMLSRGIK------ 312

Query: 388 LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP--EPNVVTYT 445
                           LD+  ++ ++ G C +  +    +LF ++  + P  +P+VVTY 
Sbjct: 313 ----------------LDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQPDVVTYN 356

Query: 446 VMICGLCIEGGIEKAYDLLPDMEEK 470
           +++   C +  + +A D+L  M ++
Sbjct: 357 ILLNAFCTKNSVSRAIDILNTMLDQ 381



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 145/302 (48%), Gaps = 19/302 (6%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
            P   ++NSL+  L  K      + L  R+     +P+ ++   L++ F K     D   
Sbjct: 102 VPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVR 161

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
            L  +  K +  +  +   LI GL  +GK      L+ + V   C+PN I     Y+++I
Sbjct: 162 VLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTI----VYSALI 217

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
           DGLC++G  ++ +   ++MK +G  P++F Y+SL+  Y  A       G+   A+ + +E
Sbjct: 218 DGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEA-------GDIHKAILVWKE 270

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
             + +      C+   + Y  +IN LCK+  + +A  ++  M SRGI  DVV YSS+I G
Sbjct: 271 MTDND------CNHHEVCYSILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHG 324

Query: 324 YCLMGRIDDARKLFVSI--ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
           +C    ++   KLF  +   +    PD  +YN L+N++     V  A+ +   M+  G  
Sbjct: 325 FCNAQLVEQGMKLFNQMLCHNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCD 384

Query: 382 PD 383
           PD
Sbjct: 385 PD 386



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 144/308 (46%), Gaps = 41/308 (13%)

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           ++  LC  G   +A  +F      +C    + +   Y++++ GLC +G +++   L  +M
Sbjct: 6   IVLALCRVGNVDQAVEVFRGMSDRNC----VADGYTYSTLMHGLCNEGRIDEAVSLLDEM 61

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE-FVNGNGELGVICHPDVLS 281
           +  G +P+   +N LI   C        KG+ S A +L +  F+ G       C P+ ++
Sbjct: 62  QVEGTFPNPVAFNVLISALC-------KKGDLSRASKLVDNMFLKG-------CVPNEVT 107

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y S+++ LC    +DKA  L   M +   +P+ + + +L+DG+   GR  D  ++ VS+E
Sbjct: 108 YNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLE 167

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK 401
            +G   +  SY++LI+   K  K E  + L+ EM+  G +P+                  
Sbjct: 168 EKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNT----------------- 210

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
                 V++ L+DGLC+  +   A E   ++   G  PN  TY+ ++ G    G I KA 
Sbjct: 211 -----IVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAI 265

Query: 462 DLLPDMEE 469
            +  +M +
Sbjct: 266 LVWKEMTD 273



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 138/288 (47%), Gaps = 24/288 (8%)

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
           GN   A+E+     + N      C  D  +Y ++++ LC +  +D+A  L  +M+  G  
Sbjct: 14  GNVDQAVEVFRGMSDRN------CVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTF 67

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           P+ V ++ LI   C  G +  A KL  ++  +GC+P+  +YN+L++      K+++A+SL
Sbjct: 68  PNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSL 127

Query: 372 YGEMISMGVRPDNSCI-------------LEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
              M++    P++                L+   +  +L    +  +   ++ L+ GL K
Sbjct: 128 LNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFK 187

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAI 478
             +     +L+K++   G +PN + Y+ +I GLC EG  ++A + L +M+ K        
Sbjct: 188 EGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHT--PNS 245

Query: 479 ELLHKMAKRYVKPDEITVSIL--EELLNKDENCHE-CMNLLPSFLSRN 523
                +   Y +  +I  +IL  +E+ + D N HE C ++L + L +N
Sbjct: 246 FTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKN 293


>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
 gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 166/358 (46%), Gaps = 39/358 (10%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           E +   G+LP+  + + +++ +CK   V  A+     IL     P+VV  G L+ G C  
Sbjct: 258 ELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKA 317

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
            +   A  LF   V F     V PN+  Y  +I G CK G + +   L  +M+   + PD
Sbjct: 318 RELVTARSLFVHMVKF----GVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPD 373

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
            F Y  LI   C     ED     + A  L ++  N          P   +Y S+I+  C
Sbjct: 374 VFTYTILINGLCI----ED---QVAEANRLFQKMKNER------IFPSSATYNSLIHGYC 420

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K+  +++A +L  +M + G+ P+++ +S+LIDGYC +  I  A  L+  +  +G +PD  
Sbjct: 421 KEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVV 480

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFN 410
           +Y  LI+++ K   ++EAL LY +M+  G+ P++                        F 
Sbjct: 481 TYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDH----------------------TFA 518

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           CLVDG  K  RL  A + +++  +     N V +T +I GLC  G I +A     DM 
Sbjct: 519 CLVDGFWKEGRLSVAIDFYQENNQQRSCWNHVGFTCLIEGLCQNGYILRASRFFSDMR 576



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 181/389 (46%), Gaps = 39/389 (10%)

Query: 81  MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSD 140
           M+ +P   +  S+L  L  ++ + +     + + + GL+PD     +L  C  K    S 
Sbjct: 158 MKCSPDSKACLSILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQGLYSK 217

Query: 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200
               L  +      P+V      I  LC   K  EA  +F        +  V+PN+  Y+
Sbjct: 218 KEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMK----KHGVLPNLYTYS 273

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL 260
           ++IDG CK G V +   L+ ++    + P+  V+ +L+  +C A     A+     +L +
Sbjct: 274 AMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTAR-----SLFV 328

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
           H        + GV   P++  Y  +I+  CK   + +A  L  +M+S  + PDV  Y+ L
Sbjct: 329 HMV------KFGV--DPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTIL 380

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           I+G C+  ++ +A +LF  +++E   P +++YN+LI+ Y K   +E+AL L  EM + GV
Sbjct: 381 INGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGV 440

Query: 381 RPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
            P+                      +  F+ L+DG C    +++A  L+ ++   G  P+
Sbjct: 441 EPN----------------------IITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPD 478

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           VVTYT +I     E  +++A  L  DM E
Sbjct: 479 VVTYTALIDAHFKEANMKEALRLYSDMLE 507



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 169/374 (45%), Gaps = 44/374 (11%)

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
           GLF + +         P+     SI++GL +    + V V +  M  RG+ PD  +Y  L
Sbjct: 146 GLFEEALWVSREMKCSPDSKACLSILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVL 205

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
            +  CC       +G  S   +L +E  +    LG+   P+V  Y   I  LC+D  +++
Sbjct: 206 FQ--CCF-----KQGLYSKKEKLLDEMTS----LGI--KPNVYIYTIYILDLCRDNKMEE 252

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A+++F  MK  G++P++  YS++IDGYC  G +  A  L+  I     +P+   + TL++
Sbjct: 253 AEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVD 312

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFEL 404
            + K  ++  A SL+  M+  GV P+             +  +LEA  L   + +     
Sbjct: 313 GFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSP 372

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           D+  +  L++GLC   ++  A  LF+K+      P+  TY  +I G C E  +E+A DL 
Sbjct: 373 DVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLC 432

Query: 465 PDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
            +M                     +R+   A+ L  +M  + + PD +T + L +   K+
Sbjct: 433 SEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKE 492

Query: 507 ENCHECMNLLPSFL 520
            N  E + L    L
Sbjct: 493 ANMKEALRLYSDML 506



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 138/323 (42%), Gaps = 61/323 (18%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           LLP+ V    L++ FCK   +  A      +++    P++    CLI G C  G   EA 
Sbjct: 300 LLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAV 359

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
           GL ++  +     N+ P+V  Y  +I+GLC +  V +   LF  MK   I+P +  YNSL
Sbjct: 360 GLLSEMESL----NLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSL 415

Query: 238 IRVYCCAVNWEDA----KGNTSAALE----LHEEFVNG-------NGELGVICH------ 276
           I  YC   N E A       T++ +E         ++G          +G+         
Sbjct: 416 IHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGI 475

Query: 277 -PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD---------------------- 313
            PDV++Y ++I++  K+  + +A  L+ DM   GI P+                      
Sbjct: 476 VPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAID 535

Query: 314 -------------VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
                         V ++ LI+G C  G I  A + F  + S G  PD  SY +++  + 
Sbjct: 536 FYQENNQQRSCWNHVGFTCLIEGLCQNGYILRASRFFSDMRSCGITPDICSYVSMLKGHL 595

Query: 361 KIEKVEEALSLYGEMISMGVRPD 383
           + +++ + + L  +MI  G+ P+
Sbjct: 596 QEKRITDTMMLQCDMIKTGILPN 618


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 193/400 (48%), Gaps = 30/400 (7%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           TP + S+++++            + L + +   GL P+  + N ++   CK+    +A  
Sbjct: 290 TPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEK 349

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
            L  ++ +   PD V    LI G    G    A+  F + ++      + P+ I Y ++I
Sbjct: 350 VLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLS----KKISPDYITYTTLI 405

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
            G  + G V + + LF +M  RG+ PD   Y +LI VYC A       G    A  LH E
Sbjct: 406 QGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKA-------GEMVNAFSLHNE 458

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
            V    ++G+   P++++Y ++I+ LCK   +D A EL  +M+ +G+  +V +Y+S+++G
Sbjct: 459 MV----QMGMT--PNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNG 512

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP- 382
            C  G I+ A KL   +E  G  PD  +Y T+I++Y ++  +++A  L  EM+  G++P 
Sbjct: 513 ICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPT 572

Query: 383 --------DNSCILEAAELFRTLHNTKFEL----DLTVFNCLVDGLCKSWRLRSAWELFK 430
                   +  C+L   E    L     E     D   +N L+   C    + +  +++K
Sbjct: 573 VVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYK 632

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           ++   G  P+  TY ++I G C    +++A+ L  +M EK
Sbjct: 633 RMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEK 672



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 186/402 (46%), Gaps = 42/402 (10%)

Query: 74  FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
           +F+ M+  + +P   ++ +L+         +    L   + + GL PD V+   L++ +C
Sbjct: 385 WFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYC 444

Query: 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
           K   + +AF     +++   +P++VT G LI GLC  G+   A+ L  +      +  + 
Sbjct: 445 KAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMR----KKGLQ 500

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
            NV  Y S+++G+CK G + +   L  +M+  GI PDA  Y ++I  YC         G+
Sbjct: 501 LNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYC-------RLGD 553

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
              A +L +E ++          P V+++  ++N  C   +++    L   M  +GI+PD
Sbjct: 554 IDKAHKLLQEMLDRG------LQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPD 607

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
            + Y++L+  +C+   ++   K++  + ++G  PD+++YN LI  + K   ++EA  LY 
Sbjct: 608 AITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYK 667

Query: 374 EMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
           EMI  G  P                       +T +N L+    K  +   A ELF+++ 
Sbjct: 668 EMIEKGYVP----------------------TVTSYNALIKRFYKKRKFXEARELFEEMR 705

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL 475
            +G   +   Y   +     EG +E   +L    +E I +CL
Sbjct: 706 GHGLVADGEIYNFFVDMCYEEGDVEITLNLC---DEAIEKCL 744



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/344 (30%), Positives = 166/344 (48%), Gaps = 46/344 (13%)

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C   +  N   Y  II  LC+ G V +   L + M  R   PD   Y+++I  YC     
Sbjct: 250 CEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHL--- 306

Query: 248 EDAKGNTSAALELHEEF-VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
               G    AL+L ++  + G         P+  +Y SII  LCK     +A+++  +M 
Sbjct: 307 ----GELKKALKLMDDMQIKG-------LKPNRYTYNSIILLLCKIGKSFEAEKVLREMM 355

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           S+ IIPD VVY++LI G+  +G +  A K F  + S+   PD  +Y TLI  + +  KV 
Sbjct: 356 SQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVI 415

Query: 367 EALSLYGEMISMGVRPDN-------SCILEAAELFR--TLHNTKFELDLT----VFNCLV 413
           E  +L+ EMIS G++PD            +A E+    +LHN   ++ +T     +  L+
Sbjct: 416 EPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALI 475

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE---- 469
           DGLCK   L +A EL  ++ + G + NV  Y  M+ G+C  G IE+A  L+ +ME     
Sbjct: 476 DGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGID 535

Query: 470 --------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                         ++ +  KA +LL +M  R ++P  +T ++L
Sbjct: 536 PDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVL 579


>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
 gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
          Length = 1153

 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 119/496 (23%), Positives = 214/496 (43%), Gaps = 84/496 (16%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           +A+  +  M+    +P + +++ L+ +   K+     + L   +   G+ P+  S  I +
Sbjct: 196 EAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICI 255

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
               +     +A+  LG++      PDVVT   +I+ LC  G+ ++A  +F K  A D +
Sbjct: 256 RVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKASDQK 315

Query: 190 PNVIP-------------------------------NVICYASIIDGLCKDGFVNKVRVL 218
           P+ +                                N++ Y +++D LC+ G +++   +
Sbjct: 316 PDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALAV 375

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD 278
           F +MK +GI P+ + YNSLI  +  A  ++        ALEL    +N  G       P+
Sbjct: 376 FDEMKEKGISPEQYSYNSLISGFLKADMFD-------RALELFNH-MNACGP-----SPN 422

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
             ++   IN   K     KA + +  MKS+GI+PDV   ++++      GR+  A+++F 
Sbjct: 423 GYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFY 482

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398
            ++  G  PDT +Y  +I   SK  K +EA++ + +M+  G  P                
Sbjct: 483 ELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVP---------------- 526

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
                 D+   N L+D L K  +   AW+LF +L     EP   TY  ++ GL  EG ++
Sbjct: 527 ------DVLALNSLIDTLYKGGKGNEAWKLFHQLKEMKIEPTNGTYNTLLSGLGREGKVK 580

Query: 459 KAYDLLPDMEEKIR-----------ECLK-------AIELLHKMAKRYVKPDEITVSILE 500
           +   LL +M   I            +CL        AI +L+ M ++   PD  + + + 
Sbjct: 581 EVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGEVNCAIGMLYSMTEKGCTPDLSSYNTVM 640

Query: 501 ELLNKDENCHECMNLL 516
             L K+E   E   + 
Sbjct: 641 YGLIKEERFEEAFRMF 656



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 109/440 (24%), Positives = 200/440 (45%), Gaps = 42/440 (9%)

Query: 53   LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSER 112
            L+++L ++ K+ E     A   FN    +  +    S+NSL+  L  +    N I ++E 
Sbjct: 744  LIRHLCKHKKALE-----AHQLFNKFKGLGVSLKTGSYNSLIRGLVDE----NLIDIAED 794

Query: 113  LNT----IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
            L T    +G  PD  + N++++   K + + +       + RK +    VT   +I GL 
Sbjct: 795  LFTEMKRLGCGPDEFTYNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLV 854

Query: 169  MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
               +  +A  L+   ++        P    Y  ++DGL K G +     LF +M   G  
Sbjct: 855  KSKRLEQAIDLYYNLMS----EGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCK 910

Query: 229  PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
            P+  +YN L+       N     GNT    ++ E+ V    E G+  +PD+ SY  +I++
Sbjct: 911  PNCTIYNILL-------NGHRIAGNTENVCQIFEKMV----EQGI--NPDIKSYTVLIDT 957

Query: 289  LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
            LC    ++     F  +   G+ PD+++Y+ LIDG     RI++A  LF  ++ +G +P+
Sbjct: 958  LCTAGRLNDGLSYFRQLLELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPN 1017

Query: 349  TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCILEAAELFRTLHNTKFELD 405
              +YN+LI    K  K  EA  +Y E++  G +P+    + ++    +  +  N     D
Sbjct: 1018 LYTYNSLILHLGKAGKASEAAQMYEELLIKGWKPNVFTYNALIRGYSVSGSTDNAYAAYD 1077

Query: 406  -----LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
                 +++   L+ GL     +  A  LF ++ R G  P+  TY +++  +     IE+ 
Sbjct: 1078 CVAVGVSLKTALISGLVDENLINIAEGLFAEMKRRGCGPDQFTYNLILDAIGKSMRIEE- 1136

Query: 461  YDLLPDMEEKIRECLKAIEL 480
               +  ++E+I E L  + L
Sbjct: 1137 ---MLKVQEEIAEDLNQLTL 1153



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 103/446 (23%), Positives = 184/446 (41%), Gaps = 83/446 (18%)

Query: 137 GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNV 196
           G+  A VAL  +     S +  T   LI  L   G   EA  ++   V       + P+V
Sbjct: 158 GLRSAPVALPVMREAGMSLNGYTYNGLIYFLVKSGFDAEAMEVYKAMV----EDGISPSV 213

Query: 197 ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSA 256
             Y+ ++    K   V+ V  L  +M+ RG+ P+ + Y   IRV   A  +++A      
Sbjct: 214 RTYSVLMVSFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAY----- 268

Query: 257 ALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD--- 313
                 + +    + G  C PDV+++  +I  LC    +  AK++F  MK+    PD   
Sbjct: 269 ------QILGKMEDSG--CKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKASDQKPDRVT 320

Query: 314 --------------------------------VVVYSSLIDGYCLMGRIDDARKLFVSIE 341
                                           +V Y++++D  C +GR+D+A  +F  ++
Sbjct: 321 YITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALAVFDEMK 380

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCIL 388
            +G  P+  SYN+LI+ + K +  + AL L+  M + G  P+             +   L
Sbjct: 381 EKGISPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSL 440

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
           +A + +  + +     D+   N ++  L +S RL  A  +F +L   G  P+ +TYT+MI
Sbjct: 441 KAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMMI 500

Query: 449 CGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVK 490
                    ++A +   DM E                  K  +  +A +L H++ +  ++
Sbjct: 501 KCCSKASKADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQLKEMKIE 560

Query: 491 PDEITVSILEELLNKDENCHECMNLL 516
           P   T + L   L ++    E M+LL
Sbjct: 561 PTNGTYNTLLSGLGREGKVKEVMHLL 586



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 113/485 (23%), Positives = 200/485 (41%), Gaps = 60/485 (12%)

Query: 69   NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
            N+A   F+ +  M+  P   ++N+LL  L  +      + L E +      P+ ++ N +
Sbjct: 545  NEAWKLFHQLKEMKIEPTNGTYNTLLSGLGREGKVKEVMHLLEEMTHSIHPPNLITYNTV 604

Query: 129  MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
            ++C  K   V+ A   L  +  K  +PD+ +   ++ GL  + +F EA  +F +      
Sbjct: 605  LDCLSKNGEVNCAIGMLYSMTEKGCTPDLSSYNTVMYGLIKEERFEEAFRMFCQM----- 659

Query: 189  RPNVIPNVICYASIIDGLCKDGFVN------KVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
            +  + P+     +I+    K+G +       K  +L  D        D   ++SL+    
Sbjct: 660  KKILAPDYATLCTILPSFVKNGLMKEALHTVKEYILKADCN-----TDKSSFHSLMEGIL 714

Query: 243  CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
                         A +E   EF       G++ +   L  C +I  LCK     +A +LF
Sbjct: 715  -----------NKAGVEKSIEFAENIASRGILLNDFFL--CPLIRHLCKHKKALEAHQLF 761

Query: 303  LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
               K  G+      Y+SLI G      ID A  LF  ++  GC PD  +YN ++++  K 
Sbjct: 762  NKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKS 821

Query: 363  EKVEEALSLYGEMISMGVRPD----NSCIL---------EAAELFRTLHNTKFELDLTVF 409
             ++EE L +  EM   G        N+ I          +A +L+  L +  F      +
Sbjct: 822  MRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTY 881

Query: 410  NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM-E 468
              L+DGL K+ ++  A  LF ++  YG +PN   Y +++ G  I G  E    +   M E
Sbjct: 882  GPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMVE 941

Query: 469  EKIRECLKAIELL-----------------HKMAKRYVKPDEITVSILEELLNKDENCHE 511
            + I   +K+  +L                  ++ +  ++PD I  ++L + L K E   E
Sbjct: 942  QGINPDIKSYTVLIDTLCTAGRLNDGLSYFRQLLELGLEPDLIIYNLLIDGLGKSERIEE 1001

Query: 512  CMNLL 516
             + L 
Sbjct: 1002 AVCLF 1006


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 119/440 (27%), Positives = 199/440 (45%), Gaps = 52/440 (11%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           +F+ L+  L      +    L++   T G   D  +   ++N   K   + +A   + +I
Sbjct: 226 TFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKI 285

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
                +P + T   L+ GLC  G+  EA  L  K V   C     P+V+ Y S+IDGL K
Sbjct: 286 TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGC----TPDVVTYTSLIDGLGK 341

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           +    +   LF +M  RG+  D   Y +LIR            G    A  +++   +  
Sbjct: 342 EKRSFEAYKLFKEMASRGLALDTVCYTALIRGLL-------QTGKIPQASSVYKTMTSHG 394

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                 C PDV++  ++I+ L K   +  A  +F  M++RG+ P+ VVYS+LI G C   
Sbjct: 395 ------CVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKAR 448

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--NSC 386
           ++D A ++   ++   C PDT +YN LI+   K   VE A + + EM+  G +PD     
Sbjct: 449 KMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYN 508

Query: 387 IL-----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
           IL            A  +   + +++F     V++ LVDGLCKS +L     LF ++ R 
Sbjct: 509 ILISGLCKAGNTDAACGVLDDMSSSRF-----VYSSLVDGLCKSGKLEGGCMLFHEMERS 563

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-----------IRECLKAIEL---- 480
           G   N  T T +I  LC    +++A  L   + ++           I   +K+ ++    
Sbjct: 564 GV-ANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGMPHPYAYNSIISALIKSGKVNEGQ 622

Query: 481 -LHKMAKRYVKPDEITVSIL 499
            +++   R+ KPD +T + L
Sbjct: 623 AVYQEMTRWWKPDRVTYNAL 642



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 115/407 (28%), Positives = 183/407 (44%), Gaps = 49/407 (12%)

Query: 106 FICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165
           F CLS      G      + N L++ F +     +A   L   L  +F PDV T   LI 
Sbjct: 105 FQCLSS--PRFGFQHSVHTGNALLDVFARTKRHREAGNLLKNELATIFRPDVETWNVLIT 162

Query: 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225
           G C+  +  EA   F      +    V P++  +  ++ GLCK G V      F  ++ R
Sbjct: 163 GYCLAREPEEA---FAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMDHFEAVR-R 218

Query: 226 GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSI 285
            +   A  ++ LI       N     G    A  L +E    NG     C  D+ +Y +I
Sbjct: 219 SMPVSAATFSILI-------NGLVKAGMMIQAHSLAQETTT-NG-----CTIDIHTYTAI 265

Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
           +N L K+  + +A  L   + + G  P +  Y++L++G C MGR+++A  L   I   GC
Sbjct: 266 VNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGC 325

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAE 392
            PD  +Y +LI+   K ++  EA  L+ EM S G+  D  C             I +A+ 
Sbjct: 326 TPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASS 385

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
           +++T+ +     D+   + ++DGL K+ R+ +A  +FK +   G  PN V Y+ +I GLC
Sbjct: 386 VYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLC 445

Query: 453 IEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                            K R+   A+E+L +M K +  PD IT +IL
Sbjct: 446 -----------------KARKMDCALEMLAQMKKAFCTPDTITYNIL 475



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 115/460 (25%), Positives = 203/460 (44%), Gaps = 51/460 (11%)

Query: 47  VEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNF 106
           +   T ++ +L++N K     + +A+     +     TP + ++N+LL  L         
Sbjct: 259 IHTYTAIVNWLAKNKK-----IQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEA 313

Query: 107 ICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166
           I L  ++   G  PD V+   L++   K     +A+     +  +  + D V    LIRG
Sbjct: 314 IDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRG 373

Query: 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
           L   GK  +AS ++    +  C    +P+V+  +++IDGL K G +     +F  M+ RG
Sbjct: 374 LLQTGKIPQASSVYKTMTSHGC----VPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARG 429

Query: 227 IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII 286
           + P+  VY++LI   C A   +        ALE+  +           C PD ++Y  +I
Sbjct: 430 LAPNEVVYSALIHGLCKARKMD-------CALEMLAQMKKA------FCTPDTITYNILI 476

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           + LCK   V+ A+  F +M   G  PDV  Y+ LI G C  G  D A          G +
Sbjct: 477 DGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAA---------CGVL 527

Query: 347 PDTSS----YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS--------C----ILEA 390
            D SS    Y++L++   K  K+E    L+ EM   GV    +        C    + EA
Sbjct: 528 DDMSSSRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGVANSQTRTRLIFHLCKANRVDEA 587

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
             LF  +           +N ++  L KS ++     +++++ R+  +P+ VTY  ++ G
Sbjct: 588 VSLFNAIRKEGMPHPY-AYNSIISALIKSGKVNEGQAVYQEMTRWW-KPDRVTYNALLNG 645

Query: 451 LCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVK 490
           +     +++A+    +M    R  +  + +LHK+A   +K
Sbjct: 646 MIGANRMDRAHYYYLEMTG--RGYVPPVSILHKLADDRLK 683


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 130/482 (26%), Positives = 216/482 (44%), Gaps = 63/482 (13%)

Query: 87  MPSFNSLLGALAGKKYYVNFICLSERL---NTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           + S+N LL  L+        I L + +   N   + P+ ++LN ++N +CK+  ++ A +
Sbjct: 151 LTSYNRLLMCLSRFSMVDEMISLYKEMLTDNGNSVFPNLITLNTMLNSYCKLGNMAVARL 210

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP--NVICYAS 201
              RILR    PD+ T   L+ G C       A G+F           V+P  N + Y +
Sbjct: 211 FFVRILRCEPGPDLFTYTSLVLGYCRNDDVERACGVFC----------VMPRRNAVSYTN 260

Query: 202 IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261
           +I GLC+ G +++    +  M+  G +P    Y  L+   C         G    AL L 
Sbjct: 261 LIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALC-------ESGRELEALSLF 313

Query: 262 EEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
            E      E G  C P+V +Y  +I+ LCK+  +D+A ++  +M  +G+ P VV +++LI
Sbjct: 314 GEM----RERG--CEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALI 367

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
             YC  G ++DA  +   +ES+   P+  +YN LI  + + + ++ A++L  +M+   + 
Sbjct: 368 GSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLS 427

Query: 382 PD----NSCIL---------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
           PD    N+ I           A+ LFR +    F  D   FN  +  LC+  R+  A ++
Sbjct: 428 PDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQI 487

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL------------- 475
            + L     + N   YT +I G C  G IE A  L   M  +  ECL             
Sbjct: 488 LESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAE--ECLPNSITFNVMIDGL 545

Query: 476 -------KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESK 528
                   A+ L+  MAK  VKP   T +IL E + K+ +      +L   +S   + + 
Sbjct: 546 RKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNV 605

Query: 529 LT 530
           +T
Sbjct: 606 VT 607



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 107/414 (25%), Positives = 184/414 (44%), Gaps = 44/414 (10%)

Query: 51  TKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLS 110
           T L+  L E  K     L++AL F+  M      P + ++  L+ AL      +  + L 
Sbjct: 259 TNLIHGLCEAGK-----LHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLF 313

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
             +   G  P+  +  +L++  CK   + +A   L  ++ K  +P VV    LI   C +
Sbjct: 314 GEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKR 373

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G   +A G+     +      V PNV  Y  +I G C+   +++   L   M    + PD
Sbjct: 374 GMMEDAVGVLGLMES----KKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPD 429

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
              YN+LI   C         G   +A  L    +           PD  ++ + +  LC
Sbjct: 430 VVTYNTLIHGLC-------EVGVVDSASRLFRLMIRDGFS------PDQWTFNAFMVCLC 476

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           +   V +A ++   +K + +  +   Y++LIDGYC  G+I+ A  LF  + +E C+P++ 
Sbjct: 477 RMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSI 536

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFN 410
           ++N +I+   K  KV++A+ L  +M    V+P             TLH          +N
Sbjct: 537 TFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKP-------------TLH---------TYN 574

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            LV+ + K +    A E+  +L   G +PNVVTYT  I   C +G +E+A +++
Sbjct: 575 ILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMV 628



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 117/460 (25%), Positives = 198/460 (43%), Gaps = 62/460 (13%)

Query: 51  TKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLS 110
           T L+ YL +     E  +++AL   N M+     P +  FN+L+G+   +    + + + 
Sbjct: 329 TVLIDYLCK-----EGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVL 383

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
             + +  + P+  + N L+  FC+   +  A   L +++    SPDVVT   LI GLC  
Sbjct: 384 GLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEV 443

Query: 171 GKFTEASGLF---------------TKFVAFDCR----------------PNVIPNVICY 199
           G    AS LF                 F+   CR                 +V  N   Y
Sbjct: 444 GVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAY 503

Query: 200 ASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE 259
            ++IDG CK G +     LF  M      P++  +N +I       +    +G    A+ 
Sbjct: 504 TALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMI-------DGLRKEGKVQDAML 556

Query: 260 LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSS 319
           L E+    + +      P + +Y  ++  + K+   D+A E+   + S G  P+VV Y++
Sbjct: 557 LVEDMAKFDVK------PTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTA 610

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
            I  YC  GR+++A ++ + I++EG + D+  YN LIN+Y  +  ++ A  +   M   G
Sbjct: 611 FIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTG 670

Query: 380 VRPDNSCILEAAELFRTLHNTKFE--------LDLTVFNCLVDG--LCKSWRLRSAWELF 429
             P     L  + L + L   K +        LD+++ N  VD   +           LF
Sbjct: 671 CEPS---YLTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFGITTVLF 727

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           +K+   G  PN+ TY+ +I GLC  G +  A+ L   M E
Sbjct: 728 EKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMRE 767



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 113/496 (22%), Positives = 190/496 (38%), Gaps = 128/496 (25%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI----GLLPDFV 123
           ++ A+   N M+  + +P + ++N+L+  L      V  +  + RL  +    G  PD  
Sbjct: 411 MDRAMALLNKMVESKLSPDVVTYNTLIHGLCE----VGVVDSASRLFRLMIRDGFSPDQW 466

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           + N  M C C+M  V +A   L  +  K    +      LI G C  GK   A+ LF + 
Sbjct: 467 TFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRM 526

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK-------------------- 223
           +A +C    +PN I +  +IDGL K+G V    +L  DM                     
Sbjct: 527 LAEEC----LPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLK 582

Query: 224 ---------------GRGIYPDAFVYNSLIRVYCCAVNWEDAK------GNTSAALE--L 260
                            G  P+   Y + I+ YC     E+A+       N    L+  +
Sbjct: 583 EYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFI 642

Query: 261 HEEFVNGNGELGVI--------------CHPDVLSYCSIINSLCKDVLVDKAKE------ 300
           +   +N  G +G++              C P  L+Y    + L K ++++K K+      
Sbjct: 643 YNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTY----SILMKHLVIEKHKKEGSNPV 698

Query: 301 ---------------------------LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
                                      LF  M   G +P++  YS LI+G C +GR++ A
Sbjct: 699 GLDVSLTNISVDNTDIWSKIDFGITTVLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVA 758

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAEL 393
             L+  +   G  P    +N+L++S  K+    EA++L   M            +E + L
Sbjct: 759 FSLYHHMREGGISPSEIIHNSLLSSCCKLGMFGEAVTLLDSM------------MECSHL 806

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
                       L  +  L+ GL +      A  +F  L R G   + V + V+I GL  
Sbjct: 807 ----------AHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEVAWKVLIDGLAK 856

Query: 454 EGGIEKAYDLLPDMEE 469
            G +++  +LL  ME+
Sbjct: 857 TGYVDQCSELLNLMEK 872



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/405 (20%), Positives = 161/405 (39%), Gaps = 48/405 (11%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G++E   A   F  M+  +  P   +FN ++  L  +    + + L E +    + P 
Sbjct: 512 KAGKIE--HAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPT 569

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             + NIL+    K      A   L R++   + P+VVT    I+  C QG+  EA  +  
Sbjct: 570 LHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVI 629

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           K         V+ +   Y  +I+     G ++    +   M G G  P    Y+ L++  
Sbjct: 630 KIK----NEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYSILMKHL 685

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNG-------ELGVI-----------CHPDVLSYC 283
              +     +G+    L++    ++ +        + G+            C P++ +Y 
Sbjct: 686 --VIEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFGITTVLFEKMAECGCVPNLNTYS 743

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
            +IN LCK   ++ A  L+  M+  GI P  ++++SL+   C +G   +A  L  S+   
Sbjct: 744 KLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCKLGMFGEAVTLLDSMMEC 803

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFE 403
             +    SY  LI    +    E+A +++  ++  G                      + 
Sbjct: 804 SHLAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCG----------------------YN 841

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
            D   +  L+DGL K+  +    EL   + + G   +  TY++++
Sbjct: 842 YDEVAWKVLIDGLAKTGYVDQCSELLNLMEKNGCRLHPETYSMLM 886



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 112/274 (40%), Gaps = 46/274 (16%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+L D    N+L+N +  M  +  AF  L R+      P  +T   L++ L ++    E 
Sbjct: 635 GVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYSILMKHLVIEKHKKEG 694

Query: 177 SG-----------------------------LFTKFVAFDCRPNVIPNVICYASIIDGLC 207
           S                              LF K     C    +PN+  Y+ +I+GLC
Sbjct: 695 SNPVGLDVSLTNISVDNTDIWSKIDFGITTVLFEKMAECGC----VPNLNTYSKLINGLC 750

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
           K G +N    L+  M+  GI P   ++NSL+   CC +      G    A+ L +  +  
Sbjct: 751 KVGRLNVAFSLYHHMREGGISPSEIIHNSLLSS-CCKL------GMFGEAVTLLDSMM-- 801

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
             E   + H +  SY  +I  L + +  +KA+ +F  +   G   D V +  LIDG    
Sbjct: 802 --ECSHLAHLE--SYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEVAWKVLIDGLAKT 857

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           G +D   +L   +E  GC     +Y+ L+   ++
Sbjct: 858 GYVDQCSELLNLMEKNGCRLHPETYSMLMQELNR 891


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 119/457 (26%), Positives = 207/457 (45%), Gaps = 69/457 (15%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVN--FICLSER----LNTIGLLPDFVSLNILMNC 131
           M+     P    +N L+G++ G K  +N   + L+E+    +   G++ + ++++    C
Sbjct: 398 MVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRC 457

Query: 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
            C       AF  +  ++ + F PD  T   ++  LC   K   A  LF +      R  
Sbjct: 458 LCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMK----RGG 513

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
           ++ +V  Y  ++D  CK G + + R  F +M+  G  P+   Y +LI  Y  A       
Sbjct: 514 LVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKA------- 566

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
              S A EL E  ++        C P++++Y ++I+  CK   V+KA ++F  M     +
Sbjct: 567 KKVSYANELFETMLSEG------CLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDV 620

Query: 312 PDV----------------VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           PDV                V Y +L+DG+C   R+++ARKL  ++  EGC P+   Y+ L
Sbjct: 621 PDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDAL 680

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPD---NSCILE----------AAELFRTLHNTKF 402
           I+   K+ K++EA  +  EM   G        S +++          A+++   +     
Sbjct: 681 IDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSC 740

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
             ++ ++  ++DGLCK  +   A++L + +   G +PNVVTYT MI G  + G       
Sbjct: 741 APNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIG------- 793

Query: 463 LLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                  KI  CL   ELL +M  + V P+ +T  +L
Sbjct: 794 -------KIETCL---ELLERMGSKGVAPNYVTYRVL 820



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 121/440 (27%), Positives = 195/440 (44%), Gaps = 52/440 (11%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIGLL 119
           K+G +E   A  +FN M  +  TP + ++ +L+ A   A K  Y N   L E + + G L
Sbjct: 530 KAGLIE--QARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANE--LFETMLSEGCL 585

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDV----------------VTLGCL 163
           P+ V+ + L++  CK   V  A     R+      PDV                VT G L
Sbjct: 586 PNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGAL 645

Query: 164 IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
           + G C   +  EA  L        C PN I     Y ++IDGLCK G +++ + +  +M 
Sbjct: 646 LDGFCKSHRVEEARKLLDAMSMEGCEPNQI----VYDALIDGLCKVGKLDEAQEVKTEMS 701

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
             G     + Y+SLI  Y      + A    S  LE               C P+V+ Y 
Sbjct: 702 EHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENS-------------CAPNVVIYT 748

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
            +I+ LCK    D+A +L   M+ +G  P+VV Y+++IDG+ ++G+I+   +L   + S+
Sbjct: 749 EMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSK 808

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI-------SMGVRPD----NSCILEAAE 392
           G  P+  +Y  LI+   K   ++ A +L  EM        + G R      N   +E+  
Sbjct: 809 GVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESLG 868

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE--PNVVTYTVMICG 450
           L   +        L+V+  L+D L K+ RL  A  L +++  +         TY  +I  
Sbjct: 869 LLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIES 928

Query: 451 LCIEGGIEKAYDLLPDMEEK 470
           LC+   +E A+ L  +M +K
Sbjct: 929 LCLANKVETAFQLFSEMTKK 948



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/425 (24%), Positives = 178/425 (41%), Gaps = 61/425 (14%)

Query: 86  FMPS---FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC---KMIGVS 139
           F+P    +  L+  L     +   +    R+     LP+ V+ + L+ C C   K +G  
Sbjct: 298 FVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLL-CGCLNKKQLGRC 356

Query: 140 DAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICY 199
                L  ++ +   P       L+   C  G  + A  L  K V    +   +P  + Y
Sbjct: 357 KR--VLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMV----KCGHMPGYVVY 410

Query: 200 ASIIDGLCKD------GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
             +I  +C D        ++     + +M   G+  +    +S  R  C A  +E     
Sbjct: 411 NILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYE----- 465

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
              A  +  E + G G +     PD  +Y  ++N LC    ++ A  LF +MK  G++ D
Sbjct: 466 --KAFSVIREMI-GQGFI-----PDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVAD 517

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           V  Y+ ++D +C  G I+ ARK F  +   GC P+  +Y  LI++Y K +KV  A  L+ 
Sbjct: 518 VYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFE 577

Query: 374 EMISMGVRP---------DNSC----ILEAAELFRTLHNTKFELD--------------- 405
            M+S G  P         D  C    + +A ++F  +  +K   D               
Sbjct: 578 TMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERP 637

Query: 406 -LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            +  +  L+DG CKS R+  A +L   +   G EPN + Y  +I GLC  G +++A ++ 
Sbjct: 638 NVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 697

Query: 465 PDMEE 469
            +M E
Sbjct: 698 TEMSE 702



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 174/384 (45%), Gaps = 43/384 (11%)

Query: 110 SERLNTIGLLPDFVSL-NILMN-----CFC-KMIGVSDAFVALGRILRKVFSPDVVTLGC 162
           ++RL++  L+   +SL N+ M+     CF   +  V     AL  +  + F PD V    
Sbjct: 248 ADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTLVETENFVPDTVFYTK 307

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           LI GLC    F EA     +  A  C    +PNV+ Y++++ G      + + + +   M
Sbjct: 308 LISGLCEASLFEEAMDFLNRMRATSC----LPNVVTYSTLLCGCLNKKQLGRCKRVLNMM 363

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
              G YP   ++NSL+  YC +       G+ S A +L ++ V   G +     P  + Y
Sbjct: 364 MMEGCYPSPKIFNSLVHAYCTS-------GDHSYAYKLLKKMVKC-GHM-----PGYVVY 410

Query: 283 CSIINSLCKDV------LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
             +I S+C D       L+D A++ + +M + G++ + +  SS     C  G+ + A  +
Sbjct: 411 NILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSV 470

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------- 383
              +  +G IPDTS+Y+ ++N      K+E A  L+ EM   G+  D             
Sbjct: 471 IREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCK 530

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
              I +A + F  +       ++  +  L+    K+ ++  A ELF+ +   G  PN+VT
Sbjct: 531 AGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVT 590

Query: 444 YTVMICGLCIEGGIEKAYDLLPDM 467
           Y+ +I G C  G +EKA  +   M
Sbjct: 591 YSALIDGHCKAGQVEKACQIFERM 614



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 109/252 (43%), Gaps = 32/252 (12%)

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           L ++L    +P+VV    +I GLC  GK  EA  L        C+PNV+     Y ++ID
Sbjct: 732 LSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVT----YTAMID 787

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC----------------AVNWE 248
           G    G +     L   M  +G+ P+   Y  LI  +CC                  +W 
Sbjct: 788 GFGMIGKIETCLELLERMGSKGVAPNYVTYRVLID-HCCKNGALDVAHNLLEEMKQTHWP 846

Query: 249 DAKGNTSAALE-LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK- 306
                    +E  ++EF+   G L  I   D   + S+   L  +++  KA+ L + ++ 
Sbjct: 847 THTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLI--KAQRLEMALRL 904

Query: 307 -------SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
                  S  ++     Y+SLI+  CL  +++ A +LF  +  +G IP+  S+ +LI   
Sbjct: 905 LEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGL 964

Query: 360 SKIEKVEEALSL 371
            +  K+ EAL L
Sbjct: 965 FRNSKISEALLL 976



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 142/364 (39%), Gaps = 74/364 (20%)

Query: 160 LGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLF 219
           L  L+R  C  G F+ A     +   F  RP+       Y  +I    K   ++   ++ 
Sbjct: 203 LNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRST----YNCLIQAFLKADRLDSASLIH 258

Query: 220 LDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDV 279
            +M    +  D F         C    W +A       L   E FV           PD 
Sbjct: 259 REMSLANLRMDGFTLRCFAYSLCKVGKWREA-----LTLVETENFV-----------PDT 302

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           + Y  +I+ LC+  L ++A +    M++   +P+VV YS+L+ G     ++   +++   
Sbjct: 303 VFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNM 362

Query: 340 IESEGCIPDTSSYNTLINSY-------------SKIEK---------------------- 364
           +  EGC P    +N+L+++Y              K+ K                      
Sbjct: 363 MMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKD 422

Query: 365 ------VEEALSLYGEMISMGVRPD-------NSCILEAAE------LFRTLHNTKFELD 405
                 ++ A   Y EM++ GV  +         C+  A +      + R +    F  D
Sbjct: 423 SLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPD 482

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
            + ++ +++ LC + ++  A+ LF+++ R G   +V TYT+M+   C  G IE+A     
Sbjct: 483 TSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFN 542

Query: 466 DMEE 469
           +M E
Sbjct: 543 EMRE 546


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 120/431 (27%), Positives = 196/431 (45%), Gaps = 48/431 (11%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+  + N+L++  CK   V  AF     +      P+V+T+  +I  LC   K  EA  +
Sbjct: 405 PNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSI 464

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F       C P+ +     + S+IDGL K G V+    L+  M      P+A VY SLI+
Sbjct: 465 FEGMNHKICSPDEVT----FCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIK 520

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            +      ED         ++ +E ++        C PD+    + ++ + K     K +
Sbjct: 521 SFFKCGRKEDGH-------KIFKEMIHRG------CSPDLRLLNAYMDCVFKAGETGKGR 567

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            LF ++KSRG IPDV+ YS LI G    G   +  +LF +++ +GC+ DT +YNT I+ +
Sbjct: 568 ALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGF 627

Query: 360 SKIEKVEEALSLYGEMISMGVRPD----NSCI---------LEAAELFRTLHNTKFELDL 406
            K  KV +A  L  EM + G +P      S I          EA  LF    +   EL++
Sbjct: 628 CKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNV 687

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA------ 460
            +++ L+DG  K  R+  A+ + ++L + G  PNV T+  ++  L     I +A      
Sbjct: 688 VIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQN 747

Query: 461 ------------YDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDEN 508
                       Y +L +   ++R+  KA     +M K+ +KP+ IT + +   L K  N
Sbjct: 748 MKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGN 807

Query: 509 CHECMNLLPSF 519
             E  +L   F
Sbjct: 808 IAEASSLFERF 818



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/374 (29%), Positives = 172/374 (45%), Gaps = 31/374 (8%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           + + GLLPD V+   ++   CK   + +A     ++ +    P       +I G    GK
Sbjct: 294 IKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGK 353

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
           F EA  L  +  A  C    IP+VI Y  I+  L K G + +    F +MK +   P+  
Sbjct: 354 FDEAYSLLERQKARGC----IPSVIAYNCILTCLGKKGRLGEALRTFEEMK-KDAAPNLS 408

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            YN LI + C A       G   AA ++ +       E G+   P+V++   +I+ LCK 
Sbjct: 409 TYNVLIDMLCKA-------GEVEAAFKVRDAM----KEAGLF--PNVMTVNIMIDRLCKA 455

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             +D+A  +F  M  +   PD V + SLIDG    GR+DDA +L+  +     IP+   Y
Sbjct: 456 KKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVY 515

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPD-------NSCILEAAE------LFRTLHN 399
            +LI S+ K  + E+   ++ EMI  G  PD         C+ +A E      LF  + +
Sbjct: 516 TSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKS 575

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
             F  D+  ++ L+ GL K+   R  +ELF  +   G   +   Y   I G C  G + K
Sbjct: 576 RGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNK 635

Query: 460 AYDLLPDMEEKIRE 473
           AY LL +M+ K R+
Sbjct: 636 AYQLLEEMKTKGRQ 649



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 109/435 (25%), Positives = 197/435 (45%), Gaps = 35/435 (8%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L++A   F  M H   +P   +F SL+  L  +    +   L E++     +P+ V   
Sbjct: 457 KLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYT 516

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+  F K     D       ++ +  SPD+  L   +  +   G+  +   LF +  + 
Sbjct: 517 SLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKS- 575

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                 IP+V+ Y+ +I GL K GF  +   LF  MK +G   D   YN+ I  +C    
Sbjct: 576 ---RGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFC---- 628

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G  + A +L EE      +      P V++Y S+I+ L K   +D+A  LF + K
Sbjct: 629 ---KSGKVNKAYQLLEEMKTKGRQ------PTVVTYGSVIDGLAKIDRLDEAYMLFEEAK 679

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           S G+  +VV+YSSLIDG+  +GRID+A  +   +  +G  P+  ++N L+++  K E++ 
Sbjct: 680 SNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEIN 739

Query: 367 EALSLYGEMISMGVRPDN---SCIL----------EAAELFRTLHNTKFELDLTVFNCLV 413
           EAL  +  M ++   P++   S ++          +A   ++ +     + +   +  ++
Sbjct: 740 EALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMI 799

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK--- 470
            GL K+  +  A  LF++    G  P+  +Y  +I GL       +AY +  +   K   
Sbjct: 800 AGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEETRMKGCN 859

Query: 471 --IRECLKAIELLHK 483
              + C+  ++ L K
Sbjct: 860 IHTKTCIALLDALQK 874



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 161/392 (41%), Gaps = 46/392 (11%)

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           LG +    F P   T   LI       K  E   L      F  RP        Y ++I 
Sbjct: 151 LGEMSIAGFGPSTKTCIELILSCIKSNKLREGFDLIQCMRKFKFRPAFSA----YTTLIG 206

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
            L      + +  LF  M+  G      ++ ++IRV+         +G   AAL L +E 
Sbjct: 207 ALSSVQESDIMLTLFHQMQELGYEVSVHLFTTVIRVFA-------REGRLDAALSLLDEM 259

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
            +         H D++ Y   I+   K   VD A + F ++KS G++PD V Y+S+I   
Sbjct: 260 KSN------CLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVL 313

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD- 383
           C   R+D+A ++F  +E    +P   +YNT+I  Y    K +EA SL     + G  P  
Sbjct: 314 CKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSV 373

Query: 384 --NSCIL-------EAAELFRTLHNTKFEL--DLTVFNCLVDGLCKSWRLRSAWELFKKL 432
              +CIL          E  RT    K +   +L+ +N L+D LCK+  + +A+++   +
Sbjct: 374 IAYNCILTCLGKKGRLGEALRTFEEMKKDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAM 433

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPD 492
              G  PNV+T  +MI  LC    +++A  +   M  KI                   PD
Sbjct: 434 KEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKI-----------------CSPD 476

Query: 493 EITVSILEELLNKDENCHECMNLLPSFLSRNQ 524
           E+T   L + L K     +   L    L  ++
Sbjct: 477 EVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDK 508



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 107/427 (25%), Positives = 182/427 (42%), Gaps = 60/427 (14%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIGL 118
            K G V+  DA   +  M+     P    + SL+ +    G+K   + I   E ++  G 
Sbjct: 488 GKQGRVD--DAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKI-FKEMIHR-GC 543

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
            PD   LN  M+C  K             I  + F PDV++   LI GL   G   E   
Sbjct: 544 SPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYE 603

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           LF       C    + +   Y + IDG CK G VNK   L  +MK +G  P    Y S+I
Sbjct: 604 LFYAMKEQGC----VLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVI 659

Query: 239 -------RVYCCAVNWEDAKGNTSAALEL----HEEFVNGNGELGVI------------- 274
                  R+    + +E+AK N    LEL    +   ++G G++G I             
Sbjct: 660 DGLAKIDRLDEAYMLFEEAKSN---GLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQK 716

Query: 275 -CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
              P+V ++  ++++L K   +++A   F +MK+    P+ + YS LI+G C + + + A
Sbjct: 717 GLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKA 776

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAEL 393
              +  ++ +G  P+T +Y T+I   +K   + EA SL+    + G  PD++        
Sbjct: 777 FVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSAS------- 829

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
                          +N +++GL  S R   A+++F++    G   +  T   ++  L  
Sbjct: 830 ---------------YNAIIEGLSYSRRAMEAYKIFEETRMKGCNIHTKTCIALLDALQK 874

Query: 454 EGGIEKA 460
           +  +E+A
Sbjct: 875 DECLEQA 881


>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06710, mitochondrial; Flags: Precursor
 gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 987

 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 119/457 (26%), Positives = 207/457 (45%), Gaps = 69/457 (15%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVN--FICLSER----LNTIGLLPDFVSLNILMNC 131
           M+     P    +N L+G++ G K  +N   + L+E+    +   G++ + ++++    C
Sbjct: 398 MVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRC 457

Query: 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
            C       AF  +  ++ + F PD  T   ++  LC   K   A  LF +      R  
Sbjct: 458 LCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMK----RGG 513

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
           ++ +V  Y  ++D  CK G + + R  F +M+  G  P+   Y +LI  Y  A       
Sbjct: 514 LVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKA------- 566

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
              S A EL E  ++        C P++++Y ++I+  CK   V+KA ++F  M     +
Sbjct: 567 KKVSYANELFETMLSEG------CLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDV 620

Query: 312 PDV----------------VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           PDV                V Y +L+DG+C   R+++ARKL  ++  EGC P+   Y+ L
Sbjct: 621 PDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDAL 680

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPD---NSCILE----------AAELFRTLHNTKF 402
           I+   K+ K++EA  +  EM   G        S +++          A+++   +     
Sbjct: 681 IDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSC 740

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
             ++ ++  ++DGLCK  +   A++L + +   G +PNVVTYT MI G  + G       
Sbjct: 741 APNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIG------- 793

Query: 463 LLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                  KI  CL   ELL +M  + V P+ +T  +L
Sbjct: 794 -------KIETCL---ELLERMGSKGVAPNYVTYRVL 820



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 121/440 (27%), Positives = 195/440 (44%), Gaps = 52/440 (11%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIGLL 119
           K+G +E   A  +FN M  +  TP + ++ +L+ A   A K  Y N   L E + + G L
Sbjct: 530 KAGLIE--QARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANE--LFETMLSEGCL 585

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDV----------------VTLGCL 163
           P+ V+ + L++  CK   V  A     R+      PDV                VT G L
Sbjct: 586 PNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGAL 645

Query: 164 IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
           + G C   +  EA  L        C PN I     Y ++IDGLCK G +++ + +  +M 
Sbjct: 646 LDGFCKSHRVEEARKLLDAMSMEGCEPNQI----VYDALIDGLCKVGKLDEAQEVKTEMS 701

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
             G     + Y+SLI  Y      + A    S  LE               C P+V+ Y 
Sbjct: 702 EHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENS-------------CAPNVVIYT 748

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
            +I+ LCK    D+A +L   M+ +G  P+VV Y+++IDG+ ++G+I+   +L   + S+
Sbjct: 749 EMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSK 808

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEM-------ISMGVRPD----NSCILEAAE 392
           G  P+  +Y  LI+   K   ++ A +L  EM        + G R      N   +E+  
Sbjct: 809 GVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESLG 868

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE--PNVVTYTVMICG 450
           L   +        L+V+  L+D L K+ RL  A  L +++  +         TY  +I  
Sbjct: 869 LLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIES 928

Query: 451 LCIEGGIEKAYDLLPDMEEK 470
           LC+   +E A+ L  +M +K
Sbjct: 929 LCLANKVETAFQLFSEMTKK 948



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/425 (24%), Positives = 178/425 (41%), Gaps = 61/425 (14%)

Query: 86  FMPS---FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC---KMIGVS 139
           F+P    +  L+  L     +   +    R+     LP+ V+ + L+ C C   K +G  
Sbjct: 298 FVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLL-CGCLNKKQLGRC 356

Query: 140 DAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICY 199
                L  ++ +   P       L+   C  G  + A  L  K V    +   +P  + Y
Sbjct: 357 KR--VLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMV----KCGHMPGYVVY 410

Query: 200 ASIIDGLCKD------GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
             +I  +C D        ++     + +M   G+  +    +S  R  C A  +E     
Sbjct: 411 NILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYE----- 465

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
              A  +  E + G G +     PD  +Y  ++N LC    ++ A  LF +MK  G++ D
Sbjct: 466 --KAFSVIREMI-GQGFI-----PDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVAD 517

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           V  Y+ ++D +C  G I+ ARK F  +   GC P+  +Y  LI++Y K +KV  A  L+ 
Sbjct: 518 VYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFE 577

Query: 374 EMISMGVRP---------DNSC----ILEAAELFRTLHNTKFELD--------------- 405
            M+S G  P         D  C    + +A ++F  +  +K   D               
Sbjct: 578 TMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERP 637

Query: 406 -LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            +  +  L+DG CKS R+  A +L   +   G EPN + Y  +I GLC  G +++A ++ 
Sbjct: 638 NVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 697

Query: 465 PDMEE 469
            +M E
Sbjct: 698 TEMSE 702



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 174/384 (45%), Gaps = 43/384 (11%)

Query: 110 SERLNTIGLLPDFVSL-NILMN-----CFC-KMIGVSDAFVALGRILRKVFSPDVVTLGC 162
           ++RL++  L+   +SL N+ M+     CF   +  V     AL  +  + F PD V    
Sbjct: 248 ADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTLVETENFVPDTVFYTK 307

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           LI GLC    F EA     +  A  C    +PNV+ Y++++ G      + + + +   M
Sbjct: 308 LISGLCEASLFEEAMDFLNRMRATSC----LPNVVTYSTLLCGCLNKKQLGRCKRVLNMM 363

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
              G YP   ++NSL+  YC +       G+ S A +L ++ V   G +     P  + Y
Sbjct: 364 MMEGCYPSPKIFNSLVHAYCTS-------GDHSYAYKLLKKMVKC-GHM-----PGYVVY 410

Query: 283 CSIINSLCKDV------LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
             +I S+C D       L+D A++ + +M + G++ + +  SS     C  G+ + A  +
Sbjct: 411 NILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSV 470

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------- 383
              +  +G IPDTS+Y+ ++N      K+E A  L+ EM   G+  D             
Sbjct: 471 IREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCK 530

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
              I +A + F  +       ++  +  L+    K+ ++  A ELF+ +   G  PN+VT
Sbjct: 531 AGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVT 590

Query: 444 YTVMICGLCIEGGIEKAYDLLPDM 467
           Y+ +I G C  G +EKA  +   M
Sbjct: 591 YSALIDGHCKAGQVEKACQIFERM 614



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 109/252 (43%), Gaps = 32/252 (12%)

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           L ++L    +P+VV    +I GLC  GK  EA  L        C+PNV+     Y ++ID
Sbjct: 732 LSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVT----YTAMID 787

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC----------------AVNWE 248
           G    G +     L   M  +G+ P+   Y  LI  +CC                  +W 
Sbjct: 788 GFGMIGKIETCLELLERMGSKGVAPNYVTYRVLID-HCCKNGALDVAHNLLEEMKQTHWP 846

Query: 249 DAKGNTSAALE-LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK- 306
                    +E  ++EF+   G L  I   D   + S+   L  +++  KA+ L + ++ 
Sbjct: 847 THTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLI--KAQRLEMALRL 904

Query: 307 -------SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
                  S  ++     Y+SLI+  CL  +++ A +LF  +  +G IP+  S+ +LI   
Sbjct: 905 LEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGL 964

Query: 360 SKIEKVEEALSL 371
            +  K+ EAL L
Sbjct: 965 FRNSKISEALLL 976



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 142/364 (39%), Gaps = 74/364 (20%)

Query: 160 LGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLF 219
           L  L+R  C  G F+ A     +   F  RP+       Y  +I    K   ++   ++ 
Sbjct: 203 LNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRST----YNCLIQAFLKADRLDSASLIH 258

Query: 220 LDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDV 279
            +M    +  D F         C    W +A       L   E FV           PD 
Sbjct: 259 REMSLANLRMDGFTLRCFAYSLCKVGKWREA-----LTLVETENFV-----------PDT 302

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           + Y  +I+ LC+  L ++A +    M++   +P+VV YS+L+ G     ++   +++   
Sbjct: 303 VFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNM 362

Query: 340 IESEGCIPDTSSYNTLINSY-------------SKIEK---------------------- 364
           +  EGC P    +N+L+++Y              K+ K                      
Sbjct: 363 MMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKD 422

Query: 365 ------VEEALSLYGEMISMGVRPD-------NSCILEAAE------LFRTLHNTKFELD 405
                 ++ A   Y EM++ GV  +         C+  A +      + R +    F  D
Sbjct: 423 SLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPD 482

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
            + ++ +++ LC + ++  A+ LF+++ R G   +V TYT+M+   C  G IE+A     
Sbjct: 483 TSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFN 542

Query: 466 DMEE 469
           +M E
Sbjct: 543 EMRE 546


>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/393 (26%), Positives = 183/393 (46%), Gaps = 35/393 (8%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           +FN+++  L      V    + +++  +G  PD ++   L++ +CK   V  AF   G +
Sbjct: 509 TFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAM 568

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
            R+  SP +     LI GL    +  E + L T+         + PN++ Y ++IDG CK
Sbjct: 569 EREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGI----RGLTPNIVTYGALIDGWCK 624

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR-VYCCAVNWEDAKGNTSAALELHEEFVNG 267
           +G ++K    + +M   G+  +  + ++++  +Y          G    A  L ++ V+ 
Sbjct: 625 EGMLDKAFSSYFEMTENGLSANIIICSTMVSGLY--------RLGRIDEANLLMQKMVD- 675

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
                   H     +   + S  +   + K  +   +     ++P+ +VY+  I G C  
Sbjct: 676 --------HGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKT 727

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---- 383
           G++DDAR+ F  +  +G +PD  +Y TLI+ YS    V+EA  L  EM+  G+ P+    
Sbjct: 728 GKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTY 787

Query: 384 ---------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
                    +  +  A  LF  LH      ++  +N L+DG CK   + +A++L  K+  
Sbjct: 788 NALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIE 847

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            G  P+VVTY+ +I GLC  G IE++  LL  M
Sbjct: 848 EGISPSVVTYSALINGLCKHGDIERSMKLLNQM 880



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 170/353 (48%), Gaps = 39/353 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
            L+PD  +  +L++ +C+   + DA   L  +LR     ++     LI G C +G+  EA
Sbjct: 327 ALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEA 386

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
            G+ T+ V +    N+ P+   Y +++DG C++G  ++   L   M   GI P    YN+
Sbjct: 387 EGVITRMVDW----NLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNT 442

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           L++  C    ++DA       L++    +    + GV   PD + Y ++++ L K    +
Sbjct: 443 LLKGLCRVGAFDDA-------LQIWHLMM----KXGVA--PDEVGYSTLLDGLFKMENFE 489

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A  L+ D+ +RG     + ++++I G C MG++ +A ++F  ++  GC PD  +Y TLI
Sbjct: 490 GASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLI 549

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           + Y K   V +A  + G M    + P                       + ++N L+ GL
Sbjct: 550 DGYCKASNVGQAFKVKGAMEREXISP----------------------SIEMYNSLISGL 587

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
            KS RL    +L  ++   G  PN+VTY  +I G C EG ++KA+    +M E
Sbjct: 588 FKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTE 640



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/325 (29%), Positives = 151/325 (46%), Gaps = 41/325 (12%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           +P +  +NSL+  L   +  V    L   +   GL P+ V+   L++ +CK   +  AF 
Sbjct: 574 SPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFS 633

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF----------------- 186
           +   +     S +++    ++ GL   G+  EA+ L  K V                   
Sbjct: 634 SYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYA 693

Query: 187 -----------DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
                       C+  ++PN I Y   I GLCK G V+  R  F  +  +G  PD F Y 
Sbjct: 694 AIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYC 753

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           +LI  Y  A       GN   A  L +E +      G++  P++++Y ++IN LCK   V
Sbjct: 754 TLIHGYSAA-------GNVDEAFRLRDEML----RRGLV--PNIVTYNALINGLCKSENV 800

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           D+A+ LF  +  +G+ P+VV Y++LIDGYC +G +D A KL   +  EG  P   +Y+ L
Sbjct: 801 DRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSAL 860

Query: 356 INSYSKIEKVEEALSLYGEMISMGV 380
           IN   K   +E ++ L  +MI  GV
Sbjct: 861 INGLCKHGDIERSMKLLNQMIKAGV 885



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 126/521 (24%), Positives = 212/521 (40%), Gaps = 88/521 (16%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E+++A      M+     P   S+N+LL     + +      L +++   G+ P  ++ N
Sbjct: 382 EIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYN 441

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+   C++    DA      +++   +PD V    L+ GL     F  AS L+   +A 
Sbjct: 442 TLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILA- 500

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                   + I + ++I GLCK G + +   +F  MK  G  PD   Y +LI  YC A N
Sbjct: 501 ---RGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASN 557

Query: 247 WEDA--------KGNTSAALELHEEFVNG-------------NGELGVI-CHPDVLSYCS 284
              A        +   S ++E++   ++G               E+G+    P++++Y +
Sbjct: 558 VGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGA 617

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           +I+  CK+ ++DKA   + +M   G+  ++++ S+++ G   +GRID+A  L   +   G
Sbjct: 618 LIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHG 677

Query: 345 CIPDTS--------------------------------SYNTLINSYSKIEKVEEALSLY 372
             PD                                   YN  I    K  KV++A   +
Sbjct: 678 FFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFF 737

Query: 373 GEMISMGVRPDN--SCIL-----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
             +   G  PDN   C L           EA  L   +       ++  +N L++GLCKS
Sbjct: 738 SMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKS 797

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIE 479
             +  A  LF KL + G  PNVVTY  +I G C  G ++ A+                 +
Sbjct: 798 ENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAF-----------------K 840

Query: 480 LLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
           L  KM +  + P  +T S L   L K  +    M LL   +
Sbjct: 841 LKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMI 881



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 114/469 (24%), Positives = 195/469 (41%), Gaps = 59/469 (12%)

Query: 86  FMPS-FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           F P+ F+ +L     K    N + + + +   G +P   S N L+N   K      A   
Sbjct: 154 FSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYV 213

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
             +++R    PDV  +  ++   C  GK  EA+G   K         V PN++ Y S+I+
Sbjct: 214 YQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENL----GVEPNIVTYHSLIN 269

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA----KGNTSAALEL 260
           G    G V   + +   M  +G+  +   Y  LI+ YC     ++A    +G    A  +
Sbjct: 270 GYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALV 329

Query: 261 HEE-----FVNGNGELGVI--------------CHPDVLSYCSIINSLCKDVLVDKAKEL 301
            +E      ++G    G I                 ++    S+IN  CK   + +A+ +
Sbjct: 330 PDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGV 389

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
              M    + PD   Y++L+DGYC  G   +A  L   +  EG  P   +YNTL+    +
Sbjct: 390 ITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCR 449

Query: 362 IEKVEEALSLYGEMISMGVRPDN---SCILE----------AAELFRTLHNTKFELDLTV 408
           +   ++AL ++  M+  GV PD    S +L+          A+ L++ +    F      
Sbjct: 450 VGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRIT 509

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           FN ++ GLCK  ++  A E+F K+   G  P+ +TY  +I G C    + +A+ +   ME
Sbjct: 510 FNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAME 569

Query: 469 E------------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                              K R  ++  +LL +M  R + P+ +T   L
Sbjct: 570 REXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGAL 618



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 147/328 (44%), Gaps = 72/328 (21%)

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
           G T  A  ++++ +     +G++  PDV     ++N+ CKD  VD+A      M++ G+ 
Sbjct: 205 GETHTAHYVYQQMI----RVGIV--PDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVE 258

Query: 312 PDVVVYSSLIDGYCLMG-----------------------------------RIDDARKL 336
           P++V Y SLI+GY  +G                                   ++D+A K+
Sbjct: 259 PNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKV 318

Query: 337 FVSIESEGC-IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSC----- 386
              ++ E   +PD  +Y  LI+ Y +  K+++A+ L  EM+ +G++ +    NS      
Sbjct: 319 LRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYC 378

Query: 387 ----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
               I EA  +   + +   + D   +N L+DG C+      A+ L  K+ + G EP V+
Sbjct: 379 KRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVL 438

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEEL 502
           TY  ++ GLC  G    A+D              A+++ H M K  V PDE+  S L + 
Sbjct: 439 TYNTLLKGLCRVG----AFD-------------DALQIWHLMMKXGVAPDEVGYSTLLDG 481

Query: 503 LNKDENCHECMNLLPSFLSRNQEESKLT 530
           L K EN      L    L+R   +S++T
Sbjct: 482 LFKMENFEGASTLWKDILARGFTKSRIT 509



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 6/145 (4%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           S +G V+  +A    + M+     P + ++N+L+  L   +       L  +L+  GL P
Sbjct: 760 SAAGNVD--EAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFP 817

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           + V+ N L++ +CK+  +  AF    +++ +  SP VVT   LI GLC  G    +  L 
Sbjct: 818 NVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLL 877

Query: 181 TKFVAFDCRPNVIPNVICYASIIDG 205
            + +    +  V   +I Y +++ G
Sbjct: 878 NQMI----KAGVDSKLIEYCTLVQG 898


>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
          Length = 550

 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 128/449 (28%), Positives = 197/449 (43%), Gaps = 68/449 (15%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVN-FICLSERLNTIGLLPDFVSLNIL 128
            AL + N MI     P   +FN+LL  L    ++   +   +E    + L  D  S  I+
Sbjct: 100 QALFYXNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFNETKGNVKL--DVYSFGIM 157

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           +   C++  +   F  LG++     SP+VV    LI G C  G       LF K    D 
Sbjct: 158 IKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELD- 216

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
              V+ N   Y  +I+G  K G       L+  MK  GI P+ + YNS+I   CC     
Sbjct: 217 ---VVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMI-CRCC----N 268

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
           D K N   A EL +E      E GV C  +V++Y ++I  LC++  V +A+ L   MK  
Sbjct: 269 DGKLNN--AFELFDEMR----ERGVAC--NVVTYNTLIGGLCQERRVLEAERLMCRMKRD 320

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS-------- 360
           G+ P+++ Y++LIDGYC +G +D A  LF  ++S G  P  ++YN LI  +S        
Sbjct: 321 GLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGV 380

Query: 361 ---------------------------KIEKVEEALSLYGEMISMGVRPD---------N 384
                                      + + +E+A  +Y  M   G+  D          
Sbjct: 381 TDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHG 440

Query: 385 SCIL----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
            C++    EA++LF++L     + +  ++N ++ G CK      A  L K++   G  PN
Sbjct: 441 LCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPN 500

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           V +Y   I  LC +    +A  LL DM E
Sbjct: 501 VASYNSTIXILCKDEKWTEAEVLLKDMIE 529



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/438 (25%), Positives = 197/438 (44%), Gaps = 55/438 (12%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKV---FSPDVVTLGCLIRGLCMQGKF 173
           GL+P   + N L+    K    S+ F    R+  +       DV + G +I+G C  G  
Sbjct: 112 GLVPGSNTFNNLLILLIK----SNFFEKAWRVFNETKGNVKLDVYSFGIMIKGCCEVGYL 167

Query: 174 TEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233
            +   +  +         + PNV+ Y ++IDG CK+G + + + LF  M    +  + + 
Sbjct: 168 DKGFEVLGQMEEM----GLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYT 223

Query: 234 YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDV 293
           Y  LI  +          G     +EL+E+        G++  P+V +Y S+I   C D 
Sbjct: 224 YTVLINGFF-------KMGLKKDGIELYEKM----KLTGIV--PNVYTYNSMICRCCNDG 270

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353
            ++ A ELF +M+ RG+  +VV Y++LI G C   R+ +A +L   ++ +G  P+  SYN
Sbjct: 271 KLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYN 330

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPDNSC--ILEAA-----------ELFRTLHNT 400
           TLI+ Y  I  +++A SL+ +M S G  P  +   IL A            ++ R +   
Sbjct: 331 TLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEAR 390

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
                   +  L+D L +S  +  A++++  + + G   ++  Y V+I GLC+ G +++A
Sbjct: 391 GLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEA 450

Query: 461 YDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEEL 502
             L   ++E                  K     +A+ LL +M +  + P+  + +    +
Sbjct: 451 SKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIXI 510

Query: 503 LNKDENCHECMNLLPSFL 520
           L KDE   E   LL   +
Sbjct: 511 LCKDEKWTEAEVLLKDMI 528



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 160/356 (44%), Gaps = 45/356 (12%)

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           +V+ + +II+   +     +       M GRG+ P +  +N+L+ +   +  +E      
Sbjct: 81  HVLIHEAIINAHVRSQLPEQALFYXNQMIGRGLVPGSNTFNNLLILLIKSNFFEK----- 135

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
             A  +  E   GN +L      DV S+  +I   C+   +DK  E+   M+  G+ P+V
Sbjct: 136 --AWRVFNE-TKGNVKL------DVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNV 186

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           VVY++LIDG C  G I+  ++LF  +     + +  +Y  LIN + K+   ++ + LY +
Sbjct: 187 VVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEK 246

Query: 375 MISMGVRPD----NSCILE---------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
           M   G+ P+    NS I           A ELF  +       ++  +N L+ GLC+  R
Sbjct: 247 MKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERR 306

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME------------- 468
           +  A  L  ++ R G  PN+++Y  +I G C  G ++KA  L   M+             
Sbjct: 307 VLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNI 366

Query: 469 -----EKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519
                 + +      +++ +M  R + P ++T +IL + L + +N  +   +  S 
Sbjct: 367 LIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSM 422



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 137/304 (45%), Gaps = 38/304 (12%)

Query: 107 ICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166
           I L E++   G++P+  + N ++   C    +++AF     +  +  + +VVT   LI G
Sbjct: 241 IELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGG 300

Query: 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
           LC + +  EA  L  +      R  + PN+I Y ++IDG C  G ++K   LF  MK  G
Sbjct: 301 LCQERRVLEAERLMCRMK----RDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSG 356

Query: 227 IYPDAFVYNSLIRVYCCAVNWE---------DAKG-------------------NTSAAL 258
             P    YN LI  +  A N           +A+G                   N   A 
Sbjct: 357 QSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAF 416

Query: 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS 318
           +++          G++   D+  Y  +I+ LC    + +A +LF  +    + P+ V+Y+
Sbjct: 417 QIYSSMEKA----GLVA--DIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYN 470

Query: 319 SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
           ++I GYC  G    A +L   +   G +P+ +SYN+ I    K EK  EA  L  +MI +
Sbjct: 471 TMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIXILCKDEKWTEAEVLLKDMIEL 530

Query: 379 GVRP 382
           G++P
Sbjct: 531 GLKP 534



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 4/184 (2%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+ A   FN M     +P + ++N L+   +  K       +   +   GL P  V+  I
Sbjct: 342 LDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTI 401

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           LM+   +   +  AF     + +     D+   G LI GLC+ G   EAS LF       
Sbjct: 402 LMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMH 461

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            +    PN + Y ++I G CK+G   +   L  +M   G+ P+   YNS I + C    W
Sbjct: 462 LK----PNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIXILCKDEKW 517

Query: 248 EDAK 251
            +A+
Sbjct: 518 TEAE 521



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 126/292 (43%), Gaps = 23/292 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +LN+A   F+ M        + ++N+L+G L  ++  +    L  R+   GL P+ +S N
Sbjct: 271 KLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYN 330

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA---SGLFTKF 183
            L++ +C +  +  A     ++     SP + T   LI G      F+EA   +G+    
Sbjct: 331 TLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAG------FSEAKNSAGVTDMV 384

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
              + R  + P+ + Y  ++D L +   + K   ++  M+  G+  D ++Y  LI   C 
Sbjct: 385 REMEAR-GLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCV 443

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
             + ++A     +  E+H               P+ + Y ++I   CK+    +A  L  
Sbjct: 444 VGDMKEASKLFKSLDEMH-------------LKPNDVIYNTMIYGYCKEGSSYRALRLLK 490

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           +M   G++P+V  Y+S I   C   +  +A  L   +   G  P  S +N +
Sbjct: 491 EMGENGMVPNVASYNSTIXILCKDEKWTEAEVLLKDMIELGLKPSISIWNMI 542


>gi|297850744|ref|XP_002893253.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339095|gb|EFH69512.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1147

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 126/487 (25%), Positives = 215/487 (44%), Gaps = 69/487 (14%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMP-SFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           SKSG++E  +A  F   M      P  P SFN L+     +  +     +++ +   G+ 
Sbjct: 320 SKSGKME--EARRFHGDM-QRSGFPVTPYSFNPLIEGYCKQGLFDEAWGVTDEMLNAGIY 376

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P   + NI +   C+   + DA      +L  + +PDVV+   L+ G     KF EAS L
Sbjct: 377 PTTSTYNIYIRALCEFGRIDDA----RELLSSMAAPDVVSYNTLMHGYIKMRKFVEASLL 432

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F    A     N+ P+++ Y ++IDGLC+ G +   + L  +M  + IYPD   Y +L++
Sbjct: 433 FDDLKA----GNINPSIVTYNTLIDGLCESGNLEGAQRLKEEMTSQLIYPDVITYTTLLK 488

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            +          GN S A E+++E +           PD  +Y +      +    +KA 
Sbjct: 489 GFV-------KNGNLSMATEIYDEMLRKG------IKPDGYAYTTRTVGELRLGDSEKAF 535

Query: 300 ELFLDMKSRGI-IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
            L  +M +     PD+ +Y+  IDG C +G ++ A +    I   G +PD  +Y T+I  
Sbjct: 536 RLHEEMVAEDHHAPDLTIYNVRIDGLCKVGNLEKAIEFQRKIFRVGLVPDHVTYTTVIRG 595

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
           Y +  + + A  LY EM+S  + P                       +  +  L+ G  K
Sbjct: 596 YLEKGRFKMARDLYDEMLSKRLSPS----------------------VITYFVLIHGHAK 633

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-------- 470
           + RL  A++   ++ + G  PNV+T+  ++ G+C  G I++AY  L  MEE+        
Sbjct: 634 AGRLEQAFQYSTEMKKRGVRPNVMTHNALLHGMCKAGNIDEAYRYLCKMEEEGISPNKYS 693

Query: 471 ----------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
                     + +  + ++L  +M  + ++PD  T   L + L KD   HE M L  S  
Sbjct: 694 YTILISKHCDLDKWEEVVKLYKEMLDKEIEPDGYTHRALFKHLEKD---HESMALDSSGK 750

Query: 521 SRNQEES 527
              Q++ 
Sbjct: 751 QPEQQQQ 757



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 117/433 (27%), Positives = 185/433 (42%), Gaps = 55/433 (12%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G++P  ++ N +++   K   +         + R+      VT   LI G    GK  EA
Sbjct: 269 GIMPTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKSGKMEEA 328

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
                +F     R         +  +I+G CK G  ++   +  +M   GIYP    YN 
Sbjct: 329 R----RFHGDMQRSGFPVTPYSFNPLIEGYCKQGLFDEAWGVTDEMLNAGIYPTTSTYNI 384

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
            IR  C     +DA+       EL          L  +  PDV+SY ++++   K     
Sbjct: 385 YIRALCEFGRIDDAR-------EL----------LSSMAAPDVVSYNTLMHGYIKMRKFV 427

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A  LF D+K+  I P +V Y++LIDG C  G ++ A++L   + S+   PD  +Y TL+
Sbjct: 428 EASLLFDDLKAGNINPSIVTYNTLIDGLCESGNLEGAQRLKEEMTSQLIYPDVITYTTLL 487

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSC----------ILEAAELFRTLHNT-----K 401
             + K   +  A  +Y EM+  G++PD             + ++ + FR LH        
Sbjct: 488 KGFVKNGNLSMATEIYDEMLRKGIKPDGYAYTTRTVGELRLGDSEKAFR-LHEEMVAEDH 546

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
              DLT++N  +DGLCK   L  A E  +K+ R G  P+ VTYT +I G   +G  + A 
Sbjct: 547 HAPDLTIYNVRIDGLCKVGNLEKAIEFQRKIFRVGLVPDHVTYTTVIRGYLEKGRFKMAR 606

Query: 462 DLLPDM------------------EEKIRECLKAIELLHKMAKRYVKPDEITVSILEELL 503
           DL  +M                    K     +A +   +M KR V+P+ +T + L   +
Sbjct: 607 DLYDEMLSKRLSPSVITYFVLIHGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLHGM 666

Query: 504 NKDENCHECMNLL 516
            K  N  E    L
Sbjct: 667 CKAGNIDEAYRYL 679


>gi|242055653|ref|XP_002456972.1| hypothetical protein SORBIDRAFT_03g046570 [Sorghum bicolor]
 gi|241928947|gb|EES02092.1| hypothetical protein SORBIDRAFT_03g046570 [Sorghum bicolor]
          Length = 821

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 114/432 (26%), Positives = 197/432 (45%), Gaps = 57/432 (13%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           ++   +GL  D V  N+ M+ +CK+  +++A   L  ++     PD +   CLI G C++
Sbjct: 393 QKFRDLGLHLDGVLYNVAMDAYCKLGNMNEAVKLLNEMMAGGLVPDKIHYTCLINGYCLK 452

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G+   A  +F + +    + N+ P+V+ Y  +  G  ++G V KV  L   M  +G+ P+
Sbjct: 453 GETENAWQVFEQML----KANIKPDVVTYNILSSGYSRNGLVMKVFDLLEHMMDQGLEPN 508

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALE--------LHEEFVNGNGELGVICHP----- 277
           +  Y   I  +C   N  +A+   +   E        L+   V G    G   H      
Sbjct: 509 SLTYGIAIAGFCRGGNLSEAEVLFNIVEEKGIDNIDVLYSSMVCGYLHSGWTDHAYMLFL 568

Query: 278 ---------DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                    D LS   +IN LC+D  V +A  +   M  + ++P V+ YS LI  YC   
Sbjct: 569 RVAKQGNMVDHLSCSKLINGLCRDEKVQEASTVCSMMLEKNVVPHVISYSKLISAYCQSR 628

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----- 383
            + +A   F  +   G + D ++Y  L+N Y K+ +++EA  L+ +M+++G++PD     
Sbjct: 629 DMRNAHLWFHDMVERG-LSDVTAYTILMNGYCKVGQLQEACELFVQMVNLGIKPDVVAYT 687

Query: 384 ---NSCILEAAE-------------LFRTLHNT--------KFELDLTVFNCLVDGLCKS 419
              +  + E  +               RT H          + E D+T +  L+ G CK+
Sbjct: 688 VLLDGHLKETLQQGWQGIAKERRTFFLRTKHKVLLSSMKEMEIEPDVTCYTVLIYGQCKA 747

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-IRECLKAI 478
             L  A  LF ++   G  P+V  YT +I G C +G I KA DL  +M +K ++  + + 
Sbjct: 748 EYLEEARGLFDEMLAKGLTPDVDAYTTLINGYCSQGEIAKAEDLFQEMIDKGMKPDVLSF 807

Query: 479 ELLHKMAKRYVK 490
            +LH+   R+ K
Sbjct: 808 SVLHQRTLRHRK 819



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 110/448 (24%), Positives = 187/448 (41%), Gaps = 53/448 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  PD    + L++  CKM  +  A+  +  ++      +   +G L++ L   G  +E 
Sbjct: 329 GSTPDLYGYSYLIHSHCKMGNLEKAWYHIEDMVSHGIEINCHIVGSLLQCLRKLGMISEV 388

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
              F KF        +  + + Y   +D  CK G +N+   L  +M   G+ PD   Y  
Sbjct: 389 IVHFQKFRDL----GLHLDGVLYNVAMDAYCKLGNMNEAVKLLNEMMAGGLVPDKIHYTC 444

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH-------------------- 276
           LI  YC        KG T  A ++ E+ +  N +  V+ +                    
Sbjct: 445 LINGYC-------LKGETENAWQVFEQMLKANIKPDVVTYNILSSGYSRNGLVMKVFDLL 497

Query: 277 ---------PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
                    P+ L+Y   I   C+   + +A+ LF  ++ +GI    V+YSS++ GY   
Sbjct: 498 EHMMDQGLEPNSLTYGIAIAGFCRGGNLSEAEVLFNIVEEKGIDNIDVLYSSMVCGYLHS 557

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---N 384
           G  D A  LF+ +  +G + D  S + LIN   + EKV+EA ++   M+   V P     
Sbjct: 558 GWTDHAYMLFLRVAKQGNMVDHLSCSKLINGLCRDEKVQEASTVCSMMLEKNVVPHVISY 617

Query: 385 SCILEAAELFRTLHNTKFEL---------DLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
           S ++ A    R + N              D+T +  L++G CK  +L+ A ELF ++   
Sbjct: 618 SKLISAYCQSRDMRNAHLWFHDMVERGLSDVTAYTILMNGYCKVGQLQEACELFVQMVNL 677

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEIT 495
           G +P+VV YTV++ G   E  +++ +  +           K   LL  M +  ++PD   
Sbjct: 678 GIKPDVVAYTVLLDGHLKE-TLQQGWQGIAKERRTFFLRTKHKVLLSSMKEMEIEPDVTC 736

Query: 496 VSILEELLNKDENCHECMNLLPSFLSRN 523
            ++L     K E   E   L    L++ 
Sbjct: 737 YTVLIYGQCKAEYLEEARGLFDEMLAKG 764



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 112/483 (23%), Positives = 192/483 (39%), Gaps = 68/483 (14%)

Query: 69  NDALCFFNYMIHMQPTPFMPSF---NSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
           +DA    +   H+    F+P+    N LL  ++        +   +R+    L  D  SL
Sbjct: 167 HDAQETVDMFCHLCRLGFVPTLWACNFLLKFVSQSSDSHMVVAAYDRMKCFQLTLDAQSL 226

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           NI+     +     +AF     ++      DV      I GLC  GK+  A  +  ++  
Sbjct: 227 NIVTRSLFQANKADEAFRVWVGMIEMGVKLDVQGYSSFIIGLCDCGKYDLAYNMVRRYAV 286

Query: 186 FD--CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR-GIYPDAFVYNSLIRVYC 242
                +  V      Y  +IDGLCK+  + +   + L++K R G  PD + Y+ LI  +C
Sbjct: 287 LQEISQERVPIEAFAYNMVIDGLCKEMKLEEAEKV-LEIKTRHGSTPDLYGYSYLIHSHC 345

Query: 243 CAVN----WEDAKGNTSAALELHEEFVNGN----GELGVIC--------------HPDVL 280
              N    W   +   S  +E++   V        +LG+I               H D +
Sbjct: 346 KMGNLEKAWYHIEDMVSHGIEINCHIVGSLLQCLRKLGMISEVIVHFQKFRDLGLHLDGV 405

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
            Y   +++ CK   +++A +L  +M + G++PD + Y+ LI+GYCL G  ++A ++F  +
Sbjct: 406 LYNVAMDAYCKLGNMNEAVKLLNEMMAGGLVPDKIHYTCLINGYCLKGETENAWQVFEQM 465

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNT 400
                 PD  +YN L + YS+   V +   L   M+  G+ P++                
Sbjct: 466 LKANIKPDVVTYNILSSGYSRNGLVMKVFDLLEHMMDQGLEPNS---------------- 509

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
                   +   + G C+   L  A  LF  +   G +   V Y+ M+CG    G  + A
Sbjct: 510 ------LTYGIAIAGFCRGGNLSEAEVLFNIVEEKGIDNIDVLYSSMVCGYLHSGWTDHA 563

Query: 461 YDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
           Y L                   ++AK+    D ++ S L   L +DE   E   +    L
Sbjct: 564 YMLFL-----------------RVAKQGNMVDHLSCSKLINGLCRDEKVQEASTVCSMML 606

Query: 521 SRN 523
            +N
Sbjct: 607 EKN 609


>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
          Length = 1315

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/434 (24%), Positives = 189/434 (43%), Gaps = 46/434 (10%)

Query: 111  ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
            + ++  G+ PD  +   ++  +C+   V +A   +  ++ + F  D  TL  +I   C +
Sbjct: 820  DEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEK 879

Query: 171  GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
                 A   F K      +  + PN+I Y+S+I GLCK G V +   L  +M   G  P+
Sbjct: 880  SLVNRAVWFFHKVT----KMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPN 935

Query: 231  AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
             + + SLI   C        KG T  A  L  + +  +        P+V +Y ++I+  C
Sbjct: 936  VYTHTSLIHGLC-------KKGWTERAFRLFLKLIRSDNY-----KPNVHTYTAMISGYC 983

Query: 291  KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
            K+  + +A+ LF  MK +G++P+   Y++LIDG+C  G    A +L   + +EG  P+T 
Sbjct: 984  KEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTC 1043

Query: 351  SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN-------------SCILEAAELFRTL 397
            +YN++++   K  + EEA  L        +  D              + + +A      +
Sbjct: 1044 TYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKM 1103

Query: 398  HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                F+ D+ ++  L+   C+   ++ + +LF ++ + G  P   TYT MICG C E  +
Sbjct: 1104 FKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKV 1163

Query: 458  EKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLP 517
                               A++   KM+     PD I+   L   L K+    E   L  
Sbjct: 1164 S-----------------LAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYD 1206

Query: 518  SFLSRNQEESKLTR 531
            + + +     ++TR
Sbjct: 1207 TMIDKGLSPCEVTR 1220



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 171/388 (44%), Gaps = 33/388 (8%)

Query: 68   LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
            +N A+ FF+ +  M  +P + +++S++  L  +        L E +   G  P+  +   
Sbjct: 882  VNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTS 941

Query: 128  LMNCFCKMIGVSDAFVALGRILRK-VFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++  CK      AF    +++R   + P+V T   +I G C + K + A  LF +    
Sbjct: 942  LIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMK-- 999

Query: 187  DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                 ++PN   Y ++IDG CK G  +K   L   M   G +P+   YNS++   C    
Sbjct: 1000 --EQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGR 1057

Query: 247  WEDA--------------KGNTSAAL--------ELHEEFVNGNGELGVICHPDVLSYCS 284
             E+A               G T   L        ++++  V  N    V   PD+  Y +
Sbjct: 1058 AEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTT 1117

Query: 285  IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
            +I + C+  ++  +++LF ++   G+ P    Y+S+I GYC   ++  A K F  +   G
Sbjct: 1118 LIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHG 1177

Query: 345  CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL 404
            C PD+ SY  LI+   K  +++EA  LY  MI  G+ P      E   +  T    K E 
Sbjct: 1178 CAPDSISYGALISGLCKESRLDEARQLYDTMIDKGLSP-----CEVTRVTLTYEYCKTE- 1231

Query: 405  DLTVFNCLVDGLCKSWRLRSAWELFKKL 432
            D      +++ L K   +R+   L +KL
Sbjct: 1232 DFASAMVILERLNKKLWIRTVHTLIRKL 1259



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 86/171 (50%), Gaps = 22/171 (12%)

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353
           LV+ A  +F +M +RG+ PD   Y  +I GYC  G + +A +    +   G + D ++  
Sbjct: 811 LVEYAGNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLT 870

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLV 413
            +I ++ +   V  A+  + ++  MG+ P                      +L  ++ ++
Sbjct: 871 LIITAFCEKSLVNRAVWFFHKVTKMGLSP----------------------NLINYSSMI 908

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            GLCK   ++ A+EL +++ + G +PNV T+T +I GLC +G  E+A+ L 
Sbjct: 909 SGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLF 959



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 115/265 (43%), Gaps = 29/265 (10%)

Query: 218  LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI-CH 276
            + LDM+ +G+     V N +I V              +A + L E   N   E+     +
Sbjct: 783  MILDMRNQGLVLTTRVMNRIILV--------------AAEMRLVEYAGNVFDEMSARGVY 828

Query: 277  PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
            PD  +Y  II   C++  V +A     +M  RG + D    + +I  +C    ++ A   
Sbjct: 829  PDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWF 888

Query: 337  FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------- 383
            F  +   G  P+  +Y+++I+   K   V++A  L  EM+  G +P+             
Sbjct: 889  FHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCK 948

Query: 384  NSCILEAAELF-RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
                  A  LF + + +  ++ ++  +  ++ G CK  +L  A  LF+++   G  PN  
Sbjct: 949  KGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTN 1008

Query: 443  TYTVMICGLCIEGGIEKAYDLLPDM 467
            TYT +I G C  G   KAY+L+  M
Sbjct: 1009 TYTTLIDGHCKAGNFSKAYELMELM 1033



 Score = 45.8 bits (107), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 54/119 (45%)

Query: 66   VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
             ++N AL F N M  +   P +  + +L+ A   +    +   L + +  +GL P   + 
Sbjct: 1091 ADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETY 1150

Query: 126  NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
              ++  +C+   VS A     ++     +PD ++ G LI GLC + +  EA  L+   +
Sbjct: 1151 TSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTMI 1209


>gi|414887654|tpg|DAA63668.1| TPA: hypothetical protein ZEAMMB73_339081 [Zea mays]
          Length = 1098

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/425 (25%), Positives = 197/425 (46%), Gaps = 60/425 (14%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           E +  +G+  + V+ + +MN +C++   +DA   L  +  + FSP++VT   L++G C +
Sbjct: 267 EEMTKMGVEVNLVAYHAVMNGYCEVGQTNDARRMLDSLPGRGFSPNIVTYTLLVKGYCNE 326

Query: 171 GKFTEASGLFTKFVAFDCRPN--VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
               EA G     V  + R N  ++ +   + ++I+G C+ G +     L  +M    + 
Sbjct: 327 KNMEEAEG-----VVQEIRKNKQLVVDEAVFGAVINGYCQMGRMEDAARLLNEMVDSRLQ 381

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
            + FVYN +I  YC         G    A  +  E        GV   PD  SY S+++ 
Sbjct: 382 VNLFVYNIMINGYC-------KLGRMVEAHNILHEMT------GVGVRPDTYSYNSLVDG 428

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
            CK  L++KA E +  M   G     + Y++L+ G+C +G IDDA +L+  +  +G  P+
Sbjct: 429 YCKKGLMNKAFETYNTMLRNGFAATTLTYNALLKGFCSLGSIDDALRLWFLMLKKGIAPN 488

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTV 408
             S +TL++ + K  K E+AL+L+ E ++ G+  +                       T 
Sbjct: 489 EISCSTLLDGFFKSGKTEKALNLWKETLARGLAKNT----------------------TT 526

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           FN +++GLCK  R+  A EL  K+ ++   P+++TY  +  G C  G +++A  +L ++E
Sbjct: 527 FNTVINGLCKIERMPEAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDMDRASRILNELE 586

Query: 469 EK------------------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCH 510
                                ++  K  ++L +M+ R + P+ +    L     K+ + H
Sbjct: 587 NLGFAPTIEFFNSLITGHFIAKQHGKVNDILFEMSNRGLSPNTVAYGALIAGWCKEGDLH 646

Query: 511 ECMNL 515
              NL
Sbjct: 647 TAYNL 651



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 170/397 (42%), Gaps = 66/397 (16%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL  +  + N ++N  CK+  + +A   + ++ +    PD++T   L  G C  G    A
Sbjct: 519 GLAKNTTTFNTVINGLCKIERMPEAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDMDRA 578

Query: 177 SGLFTKFVAFDCRPNV-------------------------------IPNVICYASIIDG 205
           S +  +       P +                                PN + Y ++I G
Sbjct: 579 SRILNELENLGFAPTIEFFNSLITGHFIAKQHGKVNDILFEMSNRGLSPNTVAYGALIAG 638

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG--NTSAALELHEE 263
            CK+G ++    L+L+M  +G+ P+ F+ +SL+  +     +++A          ++  +
Sbjct: 639 WCKEGDLHTAYNLYLEMIEKGLVPNLFICSSLVSCFYRKGKFDEANLVLQNLVGTDMIPD 698

Query: 264 FVNGNGELGVIC-----------HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
                 E+G +            H   + +  +I  LCK   ++ AK L  D+K +G + 
Sbjct: 699 ISAPRLEIGKVANFIDTVAGGNHHSAKIMWNIVIFGLCKLGRIEDAKNLLADLKDKGFVA 758

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
           D   YSSLI G    G +D A  L  ++ S G  P+  +YN+LI    K  ++  A+SL+
Sbjct: 759 DNFTYSSLIHGCSASGFVDVAFDLRDTMLSVGLTPNIVTYNSLIYGLCKSGELSRAVSLF 818

Query: 373 GEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
            ++ + G+ P+                         +N L+D  CK   +  A++L +++
Sbjct: 819 KKLWTKGISPN----------------------AITYNTLIDKHCKDGYITEAFKLKQRM 856

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
              G  P V TY+++I GLC +G +E+A  LL  M E
Sbjct: 857 IEEGIHPTVFTYSILINGLCTQGYMEEAIKLLDQMIE 893



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 103/462 (22%), Positives = 190/462 (41%), Gaps = 74/462 (16%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
             +  +G+ PD  S N L++ +CK   ++ AF     +LR  F+   +T   L++G C  
Sbjct: 408 HEMTGVGVRPDTYSYNSLVDGYCKKGLMNKAFETYNTMLRNGFAATTLTYNALLKGFCSL 467

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G   +A  L+   +    +  + PN I  ++++DG  K G   K   L+ +   RG+  +
Sbjct: 468 GSIDDALRLWFLML----KKGIAPNEISCSTLLDGFFKSGKTEKALNLWKETLARGLAKN 523

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
              +N++I   C      +A           EE V+   +    C PD+++Y ++ +  C
Sbjct: 524 TTTFNTVINGLCKIERMPEA-----------EELVDKMKQWR--CPPDIITYRTLFSGYC 570

Query: 291 KDVLVDKA-----------------------------------KELFLDMKSRGIIPDVV 315
           K   +D+A                                    ++  +M +RG+ P+ V
Sbjct: 571 KIGDMDRASRILNELENLGFAPTIEFFNSLITGHFIAKQHGKVNDILFEMSNRGLSPNTV 630

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
            Y +LI G+C  G +  A  L++ +  +G +P+    ++L++ + +  K +EA  +   +
Sbjct: 631 AYGALIAGWCKEGDLHTAYNLYLEMIEKGLVPNLFICSSLVSCFYRKGKFDEANLVLQNL 690

Query: 376 ISMGVRPDNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
           +   + PD S     I + A    T+          ++N ++ GLCK  R+  A  L   
Sbjct: 691 VGTDMIPDISAPRLEIGKVANFIDTVAGGNHHSAKIMWNIVIFGLCKLGRIEDAKNLLAD 750

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRE 473
           L   G   +  TY+ +I G    G ++ A+DL   M                    K  E
Sbjct: 751 LKDKGFVADNFTYSSLIHGCSASGFVDVAFDLRDTMLSVGLTPNIVTYNSLIYGLCKSGE 810

Query: 474 CLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
             +A+ L  K+  + + P+ IT + L +   KD    E   L
Sbjct: 811 LSRAVSLFKKLWTKGISPNAITYNTLIDKHCKDGYITEAFKL 852



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/403 (23%), Positives = 170/403 (42%), Gaps = 66/403 (16%)

Query: 151 KVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDG 210
           K FS    +   L+R L   G+   A  +F +     CR ++     C  SI++ L + G
Sbjct: 167 KEFSFSAASFDLLLRALANAGQLDGALQVFDEMRTLGCRLSMRS---C-NSILNRLAQTG 222

Query: 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC------CAVNW--EDAKGNTSAALELHE 262
            +     +F  M+  G  PD F    + + YC       A+ +  E  K      L  + 
Sbjct: 223 DLGATVAVFEQMQRAGALPDKFTVAIMAKAYCKVKGVVHALEFVEEMTKMGVEVNLVAYH 282

Query: 263 EFVNGNGELGVI--------------CHPDVLSYCSIINSLCKDVLVDKAKELFLDM-KS 307
             +NG  E+G                  P++++Y  ++   C +  +++A+ +  ++ K+
Sbjct: 283 AVMNGYCEVGQTNDARRMLDSLPGRGFSPNIVTYTLLVKGYCNEKNMEEAEGVVQEIRKN 342

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           + ++ D  V+ ++I+GYC MGR++DA +L   +       +   YN +IN Y K+ ++ E
Sbjct: 343 KQLVVDEAVFGAVINGYCQMGRMEDAARLLNEMVDSRLQVNLFVYNIMINGYCKLGRMVE 402

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           A ++  EM  +GVRPD                         +N LVDG CK   +  A+E
Sbjct: 403 AHNILHEMTGVGVRPDTYS----------------------YNSLVDGYCKKGLMNKAFE 440

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKR 487
            +  + R G     +TY  ++ G C  G I+                  A+ L   M K+
Sbjct: 441 TYNTMLRNGFAATTLTYNALLKGFCSLGSID-----------------DALRLWFLMLKK 483

Query: 488 YVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
            + P+EI+ S L +   K     + +NL    L+R   ++  T
Sbjct: 484 GIAPNEISCSTLLDGFFKSGKTEKALNLWKETLARGLAKNTTT 526



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 156/341 (45%), Gaps = 39/341 (11%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLL-GALAGKKY-YVNFICLSERLNTIGLLPDFVS 124
           +++ A    N + ++   P +  FNSL+ G    K++  VN I     ++  GL P+ V+
Sbjct: 574 DMDRASRILNELENLGFAPTIEFFNSLITGHFIAKQHGKVNDILF--EMSNRGLSPNTVA 631

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
              L+  +CK   +  A+     ++ K   P++     L+     +GKF EA+ +    V
Sbjct: 632 YGALIAGWCKEGDLHTAYNLYLEMIEKGLVPNLFICSSLVSCFYRKGKFDEANLVLQNLV 691

Query: 185 AFDCRP-------------NVIPNV---------ICYASIIDGLCKDGFVNKVRVLFLDM 222
             D  P             N I  V         I +  +I GLCK G +   + L  D+
Sbjct: 692 GTDMIPDISAPRLEIGKVANFIDTVAGGNHHSAKIMWNIVIFGLCKLGRIEDAKNLLADL 751

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
           K +G   D F Y+SLI  + C+     A G    A +L +        L V   P++++Y
Sbjct: 752 KDKGFVADNFTYSSLI--HGCS-----ASGFVDVAFDLRDTM------LSVGLTPNIVTY 798

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
            S+I  LCK   + +A  LF  + ++GI P+ + Y++LID +C  G I +A KL   +  
Sbjct: 799 NSLIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNTLIDKHCKDGYITEAFKLKQRMIE 858

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           EG  P   +Y+ LIN       +EEA+ L  +MI   V P+
Sbjct: 859 EGIHPTVFTYSILINGLCTQGYMEEAIKLLDQMIENNVDPN 899



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 74/148 (50%), Gaps = 6/148 (4%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           S SG V++  A    + M+ +  TP + ++NSL+  L         + L ++L T G+ P
Sbjct: 771 SASGFVDV--AFDLRDTMLSVGLTPNIVTYNSLIYGLCKSGELSRAVSLFKKLWTKGISP 828

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           + ++ N L++  CK   +++AF    R++ +   P V T   LI GLC QG   EA  L 
Sbjct: 829 NAITYNTLIDKHCKDGYITEAFKLKQRMIEEGIHPTVFTYSILINGLCTQGYMEEAIKLL 888

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCK 208
            + +      NV PN + Y ++I G  +
Sbjct: 889 DQMI----ENNVDPNYVTYWTLIQGYVR 912


>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 712

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/428 (25%), Positives = 185/428 (43%), Gaps = 46/428 (10%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
            ++PD  S  +++  +C+M  +SD    L  ++ + ++ D  T   +I     +G    A
Sbjct: 223 AVVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTLMISTFSEKGFVNRA 282

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
              F K+V     PN+I     ++S+I+GLCK G + +   +  +M  +G  P+ + + +
Sbjct: 283 FWYFKKWVQMGLNPNLIN----FSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTA 338

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI   C        KG T  A  L  + V  +        P+V +Y  +IN  CK+  ++
Sbjct: 339 LIDGLC-------KKGWTEKAFRLFLKLVRSDNY-----KPNVYTYTCMINGYCKEEKLN 386

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A+ L + MK +G++P+   Y+ LIDG+C  G    A +L   +  EG  P+  +YN +I
Sbjct: 387 RAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAII 446

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCIL-------------EAAELFRTLHNTKFE 403
           +   K  +  EA  L    +  G+  D                  +A  +F  +     +
Sbjct: 447 DGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQ 506

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D+  +N L+   C+  ++  + +LF++    G  P   TYT MICG C +G I      
Sbjct: 507 PDMHTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPTKETYTSMICGYCRDGHIS----- 561

Query: 464 LPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
                        AI+  HKM     KPD IT   L   L  +    E   L  + +   
Sbjct: 562 ------------SAIKFFHKMRDYGCKPDSITYGALISGLCNESKLDEACQLYETMIDNG 609

Query: 524 QEESKLTR 531
               ++TR
Sbjct: 610 LSPCEVTR 617



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 108/423 (25%), Positives = 176/423 (41%), Gaps = 74/423 (17%)

Query: 116 IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
           +GL P+ ++ + L+N  CK+  +  AF  L  ++RK + P+V T   LI GLC +G   +
Sbjct: 292 MGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEK 351

Query: 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA---- 231
           A  LF K V  D   N  PNV  Y  +I+G CK+  +N+  +L + MK +G+ P+     
Sbjct: 352 AFRLFLKLVRSD---NYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYT 408

Query: 232 -------------------------------FVYNSLIRVYCCAVNWEDAKGNTSAALE- 259
                                          F YN++I   C    + +A       L+ 
Sbjct: 409 CLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKS 468

Query: 260 -LHEEFVNGNGELGVIC--------------------HPDVLSYCSIINSLCKDVLVDKA 298
            LH + V     +   C                     PD+ +Y  +I + C+   V+++
Sbjct: 469 GLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEES 528

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
           ++LF +    G++P    Y+S+I GYC  G I  A K F  +   GC PD+ +Y  LI+ 
Sbjct: 529 EKLFEEAVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISG 588

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSCIL----------EAAELFRTLHNTKFELDLTV 408
                K++EA  LY  MI  G+ P     +          ++A     L   + +L +  
Sbjct: 589 LCNESKLDEACQLYETMIDNGLSPCEVTRVTLAYEYCKQGDSATAMIILERLEKKLWIRT 648

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
            N L+  LC   ++  A   F KL       + +T        C E      + L+ D+ 
Sbjct: 649 VNTLIRKLCSEKKVGVAALFFHKLLDKDLNVDRITLAAFTTA-CYESN---KFALVSDLS 704

Query: 469 EKI 471
           E+I
Sbjct: 705 ERI 707



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 98/193 (50%), Gaps = 24/193 (12%)

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
           G++    +L++  +I+       VD A+++F +M  R ++PD   Y  ++ GYC MGRI 
Sbjct: 188 GLVLKARILNF--VIDVALALGFVDYAEKVFDEMLDRAVVPDSTSYKLMVVGYCRMGRIS 245

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAA 391
           D  +    +   G   D ++   +I+++S+   V  A   + + + MG+ P         
Sbjct: 246 DVDRWLKDMIERGYAVDNATCTLMISTFSEKGFVNRAFWYFKKWVQMGLNP--------- 296

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
                        +L  F+ L++GLCK   ++ A+E+ +++ R G +PNV T+T +I GL
Sbjct: 297 -------------NLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGL 343

Query: 452 CIEGGIEKAYDLL 464
           C +G  EKA+ L 
Sbjct: 344 CKKGWTEKAFRLF 356



 Score = 45.1 bits (105), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 52/120 (43%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           + +   AL  F+ M  +   P M ++N L+     +K       L E    +GLLP   +
Sbjct: 487 QTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPTKET 546

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
              ++  +C+   +S A     ++      PD +T G LI GLC + K  EA  L+   +
Sbjct: 547 YTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGLCNESKLDEACQLYETMI 606


>gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 732

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 166/366 (45%), Gaps = 47/366 (12%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           E +   G++P+  + + +++ +CK   +  A+     IL     P+VV  G L+ G C  
Sbjct: 292 ELMKIHGVVPNLYTYSAMIDGYCKTGNLRQAYGLYKEILVAELLPNVVVFGTLVDGFCKA 351

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
            +   A  LF   V F     V PN+  Y  +I G CK G + +   L  +M+   + PD
Sbjct: 352 RELVAARSLFVHMVKF----GVDPNLYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPD 407

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
            F Y  LI   C      +A         L +   N          P  ++Y S+I+  C
Sbjct: 408 VFTYTILINGLCTEERLAEAN-------RLFQRMKNER------IFPSSVTYNSLIHGFC 454

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K+  ++KA +L  +M S G+ P+++ +S+LIDGYC +  I  A  L+  +  +G +PD  
Sbjct: 455 KEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVV 514

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFN 410
           +Y TLI+++ K   ++EAL LY +M+  G+ P++                        F 
Sbjct: 515 TYTTLIDAHFKEANMKEALRLYSDMLEAGIHPNDH----------------------TFA 552

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT--------YTVMICGLCIEGGIEKAYD 462
           CLVDG  K  RL  A + + +  +     ++V         +T +I GLC  G I +A  
Sbjct: 553 CLVDGFWKEGRLSDAIDFYLENNQAATGKSIVQRSCWKYVGFTCLIEGLCQNGYILRASR 612

Query: 463 LLPDME 468
              DM+
Sbjct: 613 FFSDMK 618



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 164/351 (46%), Gaps = 44/351 (12%)

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL 260
           +I++GL +    + V V +  M  RG+ PD  +Y+ L +  CC       +G  S   +L
Sbjct: 203 AILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYSVLFQ--CCF-----KQGFPSKKEKL 255

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
            +E  +    LGV   P+V  Y   I  LC++  +++A+++F  MK  G++P++  YS++
Sbjct: 256 LDEMTS----LGV--KPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAM 309

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           IDGYC  G +  A  L+  I     +P+   + TL++ + K  ++  A SL+  M+  GV
Sbjct: 310 IDGYCKTGNLRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVAARSLFVHMVKFGV 369

Query: 381 RPD---------NSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
            P+           C    +LEA  L   + +     D+  +  L++GLC   RL  A  
Sbjct: 370 DPNLYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTILINGLCTEERLAEANR 429

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------ 469
           LF+++      P+ VTY  +I G C E  IEKA DL  +M                    
Sbjct: 430 LFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGYC 489

Query: 470 KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
           K+R    A+ L  +M  + + PD +T + L +   K+ N  E + L    L
Sbjct: 490 KVRNIKAAMGLYFEMTIKGIVPDVVTYTTLIDAHFKEANMKEALRLYSDML 540



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 101/353 (28%), Positives = 164/353 (46%), Gaps = 39/353 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL+PD    ++L  C  K    S     L  +      P+V      IR LC + K  EA
Sbjct: 228 GLVPDVHIYSVLFQCCFKQGFPSKKEKLLDEMTSLGVKPNVYIYTIYIRDLCRENKMEEA 287

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             +F           V+PN+  Y+++IDG CK G + +   L+ ++    + P+  V+ +
Sbjct: 288 EKMFELMKI----HGVVPNLYTYSAMIDGYCKTGNLRQAYGLYKEILVAELLPNVVVFGT 343

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           L+  +C A           AA  L    V    + GV   P++  Y  +I+  CK   + 
Sbjct: 344 LVDGFCKA-------RELVAARSLFVHMV----KFGV--DPNLYVYNCLIHGQCKSGNML 390

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A  L  +M+S  + PDV  Y+ LI+G C   R+ +A +LF  +++E   P + +YN+LI
Sbjct: 391 EAMGLLSEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLI 450

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           + + K   +E+AL L  EM S GV P+                      +  F+ L+DG 
Sbjct: 451 HGFCKEYNIEKALDLCSEMTSSGVEPN----------------------IITFSTLIDGY 488

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           CK   +++A  L+ ++   G  P+VVTYT +I     E  +++A  L  DM E
Sbjct: 489 CKVRNIKAAMGLYFEMTIKGIVPDVVTYTTLIDAHFKEANMKEALRLYSDMLE 541



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 168/383 (43%), Gaps = 49/383 (12%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           EL  A   F +M+     P +  +N L+         +  + L   + ++ L PD  +  
Sbjct: 353 ELVAARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYT 412

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           IL+N  C    +++A     R+  +   P  VT   LI G C +    +A  L ++  + 
Sbjct: 413 ILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKALDLCSEMTS- 471

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                V PN+I ++++IDG CK   +     L+ +M  +GI PD   Y +LI  +     
Sbjct: 472 ---SGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTYTTLIDAHF---- 524

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
               + N   AL L+ + +    E G+  HP+  ++  +++   K+  +  A + +L+  
Sbjct: 525 ---KEANMKEALRLYSDML----EAGI--HPNDHTFACLVDGFWKEGRLSDAIDFYLENN 575

Query: 307 SRGIIPDVVV--------YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
                  +V         ++ LI+G C  G I  A + F  ++S G  PD  SY +++ +
Sbjct: 576 QAATGKSIVQRSCWKYVGFTCLIEGLCQNGYILRASRFFSDMKSGGVTPDIWSYVSMLKA 635

Query: 359 YSKIEKVEEALSLYGEMISMGVRPD------------------NSCIL----EAAELFRT 396
           + + +++ + + L+ +MI  G+ P+                  ++C L        +F+ 
Sbjct: 636 HLREKRITDTMMLHCDMIKTGILPNLMVNQLLAMFYQENGYLRSACFLTNSSRLGTIFKN 695

Query: 397 LHNTKFELDLTVFNCLVDGLCKS 419
             N+ F   +TVF+C + G+C S
Sbjct: 696 TCNSIFL--ITVFHCKMYGICIS 716



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/259 (21%), Positives = 108/259 (41%), Gaps = 13/259 (5%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N    E  L +A   F  M + +  P   ++NSL+     +      + L   + + G+ 
Sbjct: 416 NGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKALDLCSEMTSSGVE 475

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ ++ + L++ +CK+  +  A      +  K   PDVVT   LI     +    EA  L
Sbjct: 476 PNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTYTTLIDAHFKEANMKEALRL 535

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           ++  +       + PN   +A ++DG  K+G ++     +L+   +     + V  S  +
Sbjct: 536 YSDML----EAGIHPNDHTFACLVDGFWKEGRLSDAIDFYLE-NNQAATGKSIVQRSCWK 590

Query: 240 V--YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
              + C +      G    A     +  +G    GV   PD+ SY S++ +  ++  +  
Sbjct: 591 YVGFTCLIEGLCQNGYILRASRFFSDMKSG----GVT--PDIWSYVSMLKAHLREKRITD 644

Query: 298 AKELFLDMKSRGIIPDVVV 316
              L  DM   GI+P+++V
Sbjct: 645 TMMLHCDMIKTGILPNLMV 663


>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
          Length = 650

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 125/471 (26%), Positives = 209/471 (44%), Gaps = 52/471 (11%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + S+NSLL AL     +           T+GL P+  + NIL+   C+      A   
Sbjct: 112 PGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKEL 171

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           L  +  + FSPDV + G LI  L   G  ++A  LF +         V P+V CY  +ID
Sbjct: 172 LNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMP----ERGVTPDVACYNILID 227

Query: 205 GLCKDG-FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL-HE 262
           G  K G  +N   +    +KG  +YP+   YN +I   C         G    + E+ H 
Sbjct: 228 GFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKC-------GKFDESFEIWHR 280

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
              N  G+       D+ +Y ++I+ LC    +D A  ++ +M   G+ PDVVVY+++++
Sbjct: 281 MKKNERGQ-------DLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLN 333

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY---------G 373
           GY   GRI++  +L+  +E EGC     SYN LI    +  KV+EA+S++          
Sbjct: 334 GYLRAGRIEECLELWKVMEKEGC-RTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCA 392

Query: 374 EMISMGVRPDNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
           + ++ GV     C    + +A  +     N + +LD   ++ +++GLC+  RL     + 
Sbjct: 393 DSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVL 452

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKA------------------YDLLPDMEEKI 471
            ++ ++G +PN      +I G      +E A                  Y+ L +   K 
Sbjct: 453 DQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKA 512

Query: 472 RECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
               +A  L+ +M  +  KP+ IT S+L   L + +     +NL    L +
Sbjct: 513 ERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEK 563



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 117/445 (26%), Positives = 207/445 (46%), Gaps = 64/445 (14%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERL-NTIGL 118
           NS +    ++DAL  F+ M     TP +  +N L+     K   +N   + ERL     +
Sbjct: 192 NSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSV 251

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
            P+  S N+++N  CK     ++F    R+ +     D+ T   LI GLC  G    A+ 
Sbjct: 252 YPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATR 311

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG-------------R 225
           ++ +         V P+V+ Y ++++G  + G + +   L+  M+              R
Sbjct: 312 VYKEMA----ENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIR 367

Query: 226 GIYPDAFVYNSLIRVY-------CCA--------VNWEDAKGNTSAALELHEEFVNGNGE 270
           G++ +A V +  I ++       CCA        V+     G  + AL + EE  NG G+
Sbjct: 368 GLFENAKV-DEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGD 426

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
           L      D  +Y S+IN LC++  +D+   +   M   G  P+  V +++I+G+    ++
Sbjct: 427 L------DTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKL 480

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEA 390
           +DA + F ++ S+GC P   +YNTLIN  SK E+  EA +L  EM+  G +P        
Sbjct: 481 EDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKP-------- 532

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
                         ++  ++ L++GLC+  +L  A  L+ +    G +P+V  + ++I G
Sbjct: 533 --------------NMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHG 578

Query: 451 LCIEGGIEKAYDLLPDMEEKIRECL 475
           LC  G +E A  L  +M++  R+C+
Sbjct: 579 LCSSGKVEDALQLYSEMKQ--RKCV 601



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 129/268 (48%), Gaps = 35/268 (13%)

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
           C P + SY S++N+L +    D+A+  FL  ++ G+ P++  Y+ LI   C   + D A+
Sbjct: 110 CQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAK 169

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC-------- 386
           +L   +  +G  PD  SY TLINS +K   + +AL L+ EM   GV PD +C        
Sbjct: 170 ELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGF 229

Query: 387 -----ILEAAELF-RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
                IL A+E++ R L       ++  +N +++GLCK  +   ++E++ ++ +     +
Sbjct: 230 FKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQD 289

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDMEE---------------------KIRECLKAIE 479
           + TY+ +I GLC  G ++ A  +  +M E                     +I ECL+  +
Sbjct: 290 LYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWK 349

Query: 480 LLHKMAKRYVKPDEITVSILEELLNKDE 507
           ++ K   R V    I +  L E    DE
Sbjct: 350 VMEKEGCRTVVSYNILIRGLFENAKVDE 377



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 133/289 (46%), Gaps = 17/289 (5%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           S+N L+  L         I + E L       D ++  +L++  CK   ++ A   L   
Sbjct: 361 SYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEA 420

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
                  D      +I GLC +G+  E +G+  +     C+PN  P+V C A +I+G  +
Sbjct: 421 ENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPN--PHV-CNA-VINGFVR 476

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
              +      F +M  +G +P    YN+LI     A  +       S A  L +E ++  
Sbjct: 477 ASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERF-------SEAYALVKEMLHKG 529

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
            +      P++++Y  ++N LC+   +D A  L+     +G  PDV +++ +I G C  G
Sbjct: 530 WK------PNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSG 583

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           +++DA +L+  ++   C+P+  ++NTL+  + K+   E A  ++  ++ 
Sbjct: 584 KVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQ 632



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 101/205 (49%), Gaps = 17/205 (8%)

Query: 284 SIINSLCKDVLVDKAKELFLDMKS-RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
           ++I +  K+ + D+A ++F  M    G  P +  Y+SL++      + D+A   F+  E+
Sbjct: 83  TVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFET 142

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILE 389
            G  P+  +YN LI    + ++ ++A  L   M   G  PD             N  + +
Sbjct: 143 MGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSD 202

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE--PNVVTYTVM 447
           A +LF  +       D+  +N L+DG  K   + +A E++++L + GP   PN+ +Y VM
Sbjct: 203 ALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLK-GPSVYPNIPSYNVM 261

Query: 448 ICGLCIEGGIEKAYDLLPDMEEKIR 472
           I GLC  G  ++++++   M++  R
Sbjct: 262 INGLCKCGKFDESFEIWHRMKKNER 286



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 4/142 (2%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L DAL FF  M+     P + ++N+L+  L+  + +     L + +   G  P+ ++ +
Sbjct: 479 KLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYS 538

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +LMN  C+   +  A     + L K F PDV     +I GLC  GK  +A  L+++    
Sbjct: 539 LLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQR 598

Query: 187 DCRPNVIPNVICYASIIDGLCK 208
            C    +PN++ + ++++G  K
Sbjct: 599 KC----VPNLVTHNTLMEGFYK 616


>gi|297808491|ref|XP_002872129.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297317966|gb|EFH48388.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 588

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 119/468 (25%), Positives = 216/468 (46%), Gaps = 29/468 (6%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +++ AL     M+     P +   N LL  L    Y      L   +  +G  P+ VS N
Sbjct: 134 KMDAALWLREKMLRSGFIPGLIMHNHLLNGLCKLGYIEKADGLVREMREMGPSPNCVSYN 193

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+   C +  V  A      + +    P+ VT   ++  LC +G     +    + +  
Sbjct: 194 TLIKGLCSVNNVDKALYLFSTLNKYGIKPNRVTCNIIVHALCQKGVIGNNNTKLLEEILD 253

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             + N   +++    ++D   K+G V +   ++ +M  + +  D+ VYN +IR  C    
Sbjct: 254 SSQVNAPLDIVTCTILMDSCFKNGNVVQALEVWKEMSQKNVPTDSVVYNVIIRGLC---- 309

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
              + GN  AA     + V    + GV  +PDV +Y ++I++LCK    D A +L   M+
Sbjct: 310 ---SSGNMVAAYGFMCDMV----KRGV--NPDVFTYNTLISALCKAGKFDVACDLHGTMQ 360

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           + G+ PD + Y  +I G C+ G +D A +   S+     +P+   +N +I+ Y +     
Sbjct: 361 NVGVAPDQISYKVIIQGLCIQGDVDRANEFLQSMLKRSLLPEVLLWNVVIDGYGRYGDTS 420

Query: 367 EALSLYGEMISMGVRP----DNSCI---------LEAAELFRTLHNTKFELDLTVFNCLV 413
            ALS+   M+S GV+P    +N+ I         ++A  +   + +TK   D T +N LV
Sbjct: 421 CALSVLNLMLSYGVKPNVYTNNALIHGYVKGGRLIDAWWVKNEMRSTKIHPDTTTYNLLV 480

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME-EKIR 472
              C    LR A++L+ ++ + G +P+++TYT ++ GLC +G +++A  LL  M+   I 
Sbjct: 481 GAACTLGHLRLAFQLYDEMLKRGCQPDIITYTELVRGLCWKGRLKEAESLLSRMQVSGIT 540

Query: 473 ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDE--NCHECMNLLPS 518
                  +L K   R  +PDE  +   + L+ ++   +C   +N  P+
Sbjct: 541 MDHVPFLILVKKYTRLQRPDEAYLVYKKWLVTRNGGVSCPSILNHKPT 588



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 167/394 (42%), Gaps = 61/394 (15%)

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           ++R LC+QGK   A  L  K +    R   IP +I +  +++GLCK G++ K   L  +M
Sbjct: 125 IMRDLCLQGKMDAALWLREKML----RSGFIPGLIMHNHLLNGLCKLGYIEKADGLVREM 180

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDA-------------KGNTSAALELH---EEFVN 266
           +  G  P+   YN+LI+  C   N + A                 +  + +H   ++ V 
Sbjct: 181 REMGPSPNCVSYNTLIKGLCSVNNVDKALYLFSTLNKYGIKPNRVTCNIIVHALCQKGVI 240

Query: 267 GNGELGV---------ICHPDVLSYCSIINSLC-KDVLVDKAKELFLDMKSRGIIPDVVV 316
           GN    +         +  P  +  C+I+   C K+  V +A E++ +M  + +  D VV
Sbjct: 241 GNNNTKLLEEILDSSQVNAPLDIVTCTILMDSCFKNGNVVQALEVWKEMSQKNVPTDSVV 300

Query: 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
           Y+ +I G C  G +  A      +   G  PD  +YNTLI++  K  K + A  L+G M 
Sbjct: 301 YNVIIRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLISALCKAGKFDVACDLHGTMQ 360

Query: 377 SMGVRPDNS---------CIL----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLR 423
           ++GV PD           CI      A E  +++       ++ ++N ++DG  +     
Sbjct: 361 NVGVAPDQISYKVIIQGLCIQGDVDRANEFLQSMLKRSLLPEVLLWNVVIDGYGRYGDTS 420

Query: 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA------------------YDLLP 465
            A  +   +  YG +PNV T   +I G    G +  A                  Y+LL 
Sbjct: 421 CALSVLNLMLSYGVKPNVYTNNALIHGYVKGGRLIDAWWVKNEMRSTKIHPDTTTYNLLV 480

Query: 466 DMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                +     A +L  +M KR  +PD IT + L
Sbjct: 481 GAACTLGHLRLAFQLYDEMLKRGCQPDIITYTEL 514



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 118/259 (45%), Gaps = 31/259 (11%)

Query: 228 YPDAF-VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII 286
           Y D+  +++S++R  C        +G   AAL L E+ +      G+I H  +L      
Sbjct: 115 YDDSLSIHSSIMRDLC-------LQGKMDAALWLREKMLRSGFIPGLIMHNHLL------ 161

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           N LCK   ++KA  L  +M+  G  P+ V Y++LI G C +  +D A  LF ++   G  
Sbjct: 162 NGLCKLGYIEKADGLVREMREMGPSPNCVSYNTLIKGLCSVNNVDKALYLFSTLNKYGIK 221

Query: 347 PDTSSYNTLI----------NSYSKI-------EKVEEALSLYGEMISMGVRPDNSCILE 389
           P+  + N ++          N+ +K+        +V   L +    I M     N  +++
Sbjct: 222 PNRVTCNIIVHALCQKGVIGNNNTKLLEEILDSSQVNAPLDIVTCTILMDSCFKNGNVVQ 281

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
           A E+++ +       D  V+N ++ GLC S  + +A+     + + G  P+V TY  +I 
Sbjct: 282 ALEVWKEMSQKNVPTDSVVYNVIIRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLIS 341

Query: 450 GLCIEGGIEKAYDLLPDME 468
            LC  G  + A DL   M+
Sbjct: 342 ALCKAGKFDVACDLHGTMQ 360



 Score = 42.0 bits (97), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 21/134 (15%)

Query: 391 AELFRTLHNTK-FELD--LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
           A L  ++  TK FE D  L++ + ++  LC   ++ +A  L +K+ R G  P ++ +  +
Sbjct: 101 ASLRESVCQTKNFEYDDSLSIHSSIMRDLCLQGKMDAALWLREKMLRSGFIPGLIMHNHL 160

Query: 448 ICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYV 489
           + GLC  G IEKA  L+ +M E                   +    KA+ L   + K  +
Sbjct: 161 LNGLCKLGYIEKADGLVREMREMGPSPNCVSYNTLIKGLCSVNNVDKALYLFSTLNKYGI 220

Query: 490 KPDEITVSILEELL 503
           KP+ +T +I+   L
Sbjct: 221 KPNRVTCNIIVHAL 234


>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
          Length = 913

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 124/464 (26%), Positives = 208/464 (44%), Gaps = 52/464 (11%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + S+NSLL AL     +           T+GL P+  + NIL+   C+      A   
Sbjct: 87  PGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKEL 146

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           L  +  + FSPDV + G LI  L   G  ++A  LF +         V P+V CY  +ID
Sbjct: 147 LNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMP----ERGVTPDVACYNILID 202

Query: 205 GLCKDG-FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL-HE 262
           G  K G  +N   +    +KG  +YP+   YN +I   C         G    + E+ H 
Sbjct: 203 GFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKC-------GKFDESFEIWHR 255

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
              N  G+       D+ +Y ++I+ LC    +D A  ++ +M   G+ PDVVVY+++++
Sbjct: 256 MKKNERGQ-------DLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLN 308

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY---------G 373
           GY   GRI++  +L+  +E EGC     SYN LI    +  KV+EA+S++          
Sbjct: 309 GYLRAGRIEECLELWKVMEKEGC-RTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCA 367

Query: 374 EMISMGVRPDNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
           + ++ GV     C    + +A  +     N + +LD   ++ +++GLC+  RL     + 
Sbjct: 368 DSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVL 427

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKA------------------YDLLPDMEEKI 471
            ++ ++G +PN      +I G      +E A                  Y+ L +   K 
Sbjct: 428 DQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKA 487

Query: 472 RECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
               +A  L+ +M ++  KP+ IT S+L   L + +     +NL
Sbjct: 488 ERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNL 531



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 122/486 (25%), Positives = 221/486 (45%), Gaps = 80/486 (16%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERL-NTIGL 118
           NS +    ++DAL  F+ M     TP +  +N L+     K   +N   + ERL     +
Sbjct: 167 NSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSV 226

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
            P+  S N+++N  CK     ++F    R+ +     D+ T   LI GLC  G    A+ 
Sbjct: 227 YPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATR 286

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG-------------R 225
           ++ +         V P+V+ Y ++++G  + G + +   L+  M+              R
Sbjct: 287 VYKEM----AENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIR 342

Query: 226 GIYPDAFVYNSLIRVY-------CCA--------VNWEDAKGNTSAALELHEEFVNGNGE 270
           G++ +A V +  I ++       CCA        V+     G  + AL + EE  NG G+
Sbjct: 343 GLFENAKV-DEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGD 401

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
           L      D  +Y S+IN LC++  +D+   +   M   G  P+  V +++I+G+    ++
Sbjct: 402 L------DTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKL 455

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEA 390
           +DA + F ++ S+GC P   +YNTLIN  SK E+  EA +L  EM+  G +P        
Sbjct: 456 EDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKP-------- 507

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
                         ++  ++ L++GLC+  +L  A  L+ +    G +P+V  + ++I G
Sbjct: 508 --------------NMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHG 553

Query: 451 LCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPD 492
           LC  G +E A  L  +M++                  K+R+  +A ++   + +  ++PD
Sbjct: 554 LCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPD 613

Query: 493 EITVSI 498
            I+ +I
Sbjct: 614 IISYNI 619



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 114/451 (25%), Positives = 191/451 (42%), Gaps = 47/451 (10%)

Query: 111 ERLNTI-GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCM 169
           +R++ I G  P   S N L+N   +     +A            SP++ T   LI+  C 
Sbjct: 77  QRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCR 136

Query: 170 QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYP 229
           + +F +A  L              P+V  Y ++I+ L K+G+++    LF +M  RG+ P
Sbjct: 137 KKQFDKAKELLNWMWG----QGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTP 192

Query: 230 DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSL 289
           D   YN LI  +         KG+   A E+ E  + G        +P++ SY  +IN L
Sbjct: 193 DVACYNILIDGFF-------KKGDILNASEIWERLLKGPS-----VYPNIPSYNVMINGL 240

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
           CK    D++ E++  MK      D+  YS+LI G C  G +D A +++  +   G  PD 
Sbjct: 241 CKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDV 300

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRP------------DNSCILEAAELFRTL 397
             YNT++N Y +  ++EE L L+  M   G R             +N+ + EA  ++  L
Sbjct: 301 VVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAKVDEAISIWELL 360

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                  D   +  LV GLCK+  L  A  + ++      + +   Y+ MI GLC EG +
Sbjct: 361 PEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRL 420

Query: 458 EKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           ++   +L  M +                  +  +   A+     M  +   P  +T + L
Sbjct: 421 DEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTL 480

Query: 500 EELLNKDENCHECMNLLPSFLSRNQEESKLT 530
              L+K E   E   L+   L +  + + +T
Sbjct: 481 INGLSKAERFSEAYALVKEMLQKGWKPNMIT 511



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 163/362 (45%), Gaps = 49/362 (13%)

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           VS NIL+    +   V +A      +  K    D +T G L+ GLC  G   +A  +  +
Sbjct: 335 VSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEE 394

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
             A + R ++  +   Y+S+I+GLC++G +++V  +   M   G  P+ +V N++I  + 
Sbjct: 395 --AENGRGDL--DTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFV 450

Query: 243 CAVNWEDA---------KG--------NT-----SAALELHEEFVNGNGELGVICHPDVL 280
            A   EDA         KG        NT     S A    E +      L     P+++
Sbjct: 451 RASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMI 510

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
           +Y  ++N LC+   +D A  L+     +G  PDV +++ +I G C  G+++DA +L+  +
Sbjct: 511 TYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEM 570

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNT 400
           +   C+P+  ++NTL+  + K+   E A  ++  ++  G++P                  
Sbjct: 571 KQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQP------------------ 612

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG-LCIEGGIEK 459
               D+  +N  + GLC   R+  A          G  P  +T+ +++ G L ++G +E 
Sbjct: 613 ----DIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVQGYLALKGYMEP 668

Query: 460 AY 461
            +
Sbjct: 669 VF 670



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 120/266 (45%), Gaps = 27/266 (10%)

Query: 104 VNFICLSERLNTI----------GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVF 153
           +N +C   RL+ +          G  P+    N ++N F +   + DA    G ++ K  
Sbjct: 411 INGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGC 470

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN 213
            P VVT   LI GL    +F+EA  L  + +    +PN+I     Y+ +++GLC+   ++
Sbjct: 471 FPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMI----TYSLLMNGLCQGKKLD 526

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
               L+     +G  PD  ++N +I   C +   EDA       L+L+ E    N     
Sbjct: 527 MALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDA-------LQLYSEMKQRN----- 574

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
            C P+++++ +++    K    ++A +++  +   G+ PD++ Y+  + G C   RI DA
Sbjct: 575 -CVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYNITLKGLCSCHRISDA 633

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSY 359
                     G +P   ++N L+  Y
Sbjct: 634 VGFLNDAVDRGVLPTAITWNILVQGY 659



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 92/193 (47%), Gaps = 4/193 (2%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L DAL FF  M+     P + ++N+L+  L+  + +     L + +   G  P+ ++ +
Sbjct: 454 KLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYS 513

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +LMN  C+   +  A     + L K F PDV     +I GLC  GK  +A  L+++    
Sbjct: 514 LLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQR 573

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           +C    +PN++ + ++++G  K     +   ++  +   G+ PD   YN  ++  C    
Sbjct: 574 NC----VPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYNITLKGLCSCHR 629

Query: 247 WEDAKGNTSAALE 259
             DA G  + A++
Sbjct: 630 ISDAVGFLNDAVD 642


>gi|359489321|ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 889

 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 197/436 (45%), Gaps = 43/436 (9%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           +DAL +FN MI     P + +FN+++ A   +   V    L + L  +G  P+ +  N L
Sbjct: 318 SDALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTL 377

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           MN + KM  +  A +    + +K  +PD +T   L+ G    G+  +   L         
Sbjct: 378 MNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVL-- 435

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
              ++P+   +   + GLC  G +++     +DM  +G+ P    +NS+I  Y  A   E
Sbjct: 436 --GLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQA-GLE 492

Query: 249 DAKGNTSAALELHEEF---------------VNGNGELGVICHPDVLSYCSIINSLCKDV 293
           D K   +  L +H                  +NG  +        ++     +N++   V
Sbjct: 493 D-KAFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTV 551

Query: 294 LVDK---------AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           L+DK         A+ L+ +M+ RGI PDVV +S+ IDG    G +++A  +F+ +  +G
Sbjct: 552 LLDKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKG 611

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAA 391
            IP+  +YN+LI  + K  K+ EAL L   M   G+ PD                +  A 
Sbjct: 612 LIPNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAI 671

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
            +F  +H T    D+  +N L++G CK++ + +A  L  ++   G  P++ TY + I G 
Sbjct: 672 NVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGF 731

Query: 452 CIEGGIEKAYDLLPDM 467
           C    + +A  +L ++
Sbjct: 732 CSSRRMNRAVLMLDEL 747



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 99/458 (21%), Positives = 184/458 (40%), Gaps = 66/458 (14%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           ++ G +   D + F     H+  + F    +SL+ A    +     + +  R+  +G+ P
Sbjct: 171 ARIGVLRSGDLVEFMWRGHHVYESDF-SVLDSLMRAFVNAEMGFQALEILGRMREVGVRP 229

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
               + IL     ++    + +     ++R+   P   T   +I G C +G       L 
Sbjct: 230 SASGVAILFKLLLRVGDYGNVWKLFKDVIRRGPQPCKYTFSGIILGFCRKGCIHLGESLL 289

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
                F C PN       Y  +I+  C  G  +     F  M  RG  P    +N++I  
Sbjct: 290 HLMPKFHCEPNAF----AYNIVINACCIRGRTSDALAWFNLMIERGCNPTVVTFNTVINA 345

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
           +C        +GN   A +L +    G  E+G    P+ + Y +++N   K   +D+A  
Sbjct: 346 FC-------KEGNVVEARKLFD----GLKEMGF--SPNAIMYNTLMNGYVKMREIDQANM 392

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGY-----------------------------------C 325
           L+ +M+ +GI PD + ++ L+ G+                                   C
Sbjct: 393 LYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLC 452

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-- 383
             GR+D+A +  + +  +G  P   ++N++I +YS+    ++A   Y  M+  G+ P   
Sbjct: 453 WAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPS 512

Query: 384 -----------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
                      N  + EA EL   +      ++   F  L+D   K   +  A  L+ ++
Sbjct: 513 TCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEM 572

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            R G  P+VV ++  I GL  +G +E+AY++  +M  K
Sbjct: 573 ERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRK 610



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 81/175 (46%), Gaps = 5/175 (2%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +LN+AL     M H    P + + N ++G L  +    + I +   ++  GL PD ++ N
Sbjct: 631 KLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYN 690

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+N +CK   + +A   + R+     +PD+ T    I G C   +   A  +  + V+ 
Sbjct: 691 TLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVS- 749

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
                ++PN + Y S+++G+C D  +++  +L   +      P+    N L+  +
Sbjct: 750 ---AGIVPNTVTYNSMLNGVCSD-ILDRAMILTARLLKMAFVPNVVTANLLLSQF 800


>gi|356574874|ref|XP_003555568.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 576

 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 135/537 (25%), Positives = 225/537 (41%), Gaps = 69/537 (12%)

Query: 31  NSENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSF 90
           +S+  P   H +        T  +K L+   K+G+    +AL F   M+     P +   
Sbjct: 63  SSDTRPQQQHYDF-----RDTHHMKALNRLCKTGK--YTEALYFLEQMVKRGYKPDVILC 115

Query: 91  NSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILR 150
             L+  L   K     + + E L   G  PD  + N +++ FC+    SD F A  R++ 
Sbjct: 116 TKLIKGLFTSKRTEKAVRVMEILEQYGD-PDSFAYNAVISGFCR----SDRFDAANRVIL 170

Query: 151 KV----FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGL 206
           ++    FSPDVVT   LI  LC +GK   A  +  + +  +C     P VI Y  +I+  
Sbjct: 171 RMKYRGFSPDVVTYNILIGSLCARGKLDLALKVMDQLLEDNCN----PTVITYTILIEAT 226

Query: 207 CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC----------CAVNWEDAKGNTSA 256
              G ++    L  +M  RG+ PD + YN ++R  C             N          
Sbjct: 227 IIHGSIDDAMRLLDEMMSRGLQPDMYTYNVIVRGMCKRGLVDRAFEFVSNLNTTPSLNLY 286

Query: 257 ALELHEEFVNGNGELGVI---------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
            L L      G  E G           C P++++Y  +I+SLC+D    +A ++   MK 
Sbjct: 287 NLLLKGLLNEGRWEAGERLMSDMIVKGCEPNIVTYSVLISSLCRDGKAGEAVDVLRVMKE 346

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           +G+ PD   Y  LI  +C  G++D A      + S G +PD  +YNT++ S  K  + +E
Sbjct: 347 KGLNPDAYCYDPLISAFCKEGKVDLAIGFVDDMISAGWLPDIVNYNTIMGSLCKKGRADE 406

Query: 368 ALSLYGEMISMGVRPDNS-------CILEAAELFRTLH------NTKFELDLTVFNCLVD 414
           AL+++ ++  +G  P+ S        +  + +  R L       +   + D   +N L+ 
Sbjct: 407 ALNIFKKLEEVGCPPNASSYNTMFGALWSSGDKIRALTMILEMLSNGVDPDRITYNSLIS 466

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC 474
            LC+   +  A  L   + R   +P V++Y +++ GLC                 K    
Sbjct: 467 SLCRDGMVDEAIGLLVDMERTEWQPTVISYNIVLLGLC-----------------KAHRI 509

Query: 475 LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLTR 531
           + AIE+L  M     +P+E T ++L E +         + L  S +S N     L R
Sbjct: 510 VDAIEVLAVMVDNGCQPNETTYTLLVEGVGYAGWRSYAVELAKSLVSMNAISQDLFR 566


>gi|255538538|ref|XP_002510334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551035|gb|EEF52521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 947

 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 143/517 (27%), Positives = 231/517 (44%), Gaps = 76/517 (14%)

Query: 26  KPISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTP 85
           K IS+ +E     + SN V+       LLK L    + G  E  DAL  ++ M+    TP
Sbjct: 412 KAISVYNEMLRVGIQSNVVT----HNSLLKGLC---RVGAFE--DALHVWHLMLKRGVTP 462

Query: 86  FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVAL 145
              S+ +LL  L     +   + L   +   G      + N ++N FCKM  + +A    
Sbjct: 463 DEVSYCTLLDLLFKMGEFFRALALWNDILARGYGRSTYAFNTMINGFCKMEKMIEAEETF 522

Query: 146 GRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDG 205
            R+    F PD VT   LI G C  G   EA  +  K      +  ++P++  Y S+I G
Sbjct: 523 NRMKELGFEPDGVTYRTLIDGYCKLGNVEEAFKVKEKME----KEAILPSIELYNSLIGG 578

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
           L K     +V  L  +M  +G+ P+   Y +LI  +C        +G    A   + + +
Sbjct: 579 LFKSKKTREVMDLLSEMCLKGLSPNVVTYGTLIAGWC-------DEGRLDKAFTAYFDMI 631

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK---------ELFLD------------ 304
               E G    P+V+    I++SL +   +D+A          ++FLD            
Sbjct: 632 ----EKGFA--PNVIICSKIVSSLYRLGRIDEANMLLQKMVNLDVFLDHGYFDRLHKADD 685

Query: 305 --MKSRGI------------IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
             + S+ I            +P+ VVY+  I G C  G++DDA+K+F S+   G  PD  
Sbjct: 686 GNLDSQKIADTLDESSKSFSLPNSVVYNIAIAGLCKSGKVDDAKKIFSSLLLRGFSPDNF 745

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTL 397
           +Y TLI+ YS    V +A SL  EM+  G+ P+             +  +  A +LF  L
Sbjct: 746 TYCTLIHGYSAAGNVNDAFSLRDEMLKRGLAPNIITYNALINGLCKSGNLDRAQKLFDKL 805

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
           H      ++  +N L+DG CK+   R A +L  K+ + G  P+++TY+ +I G C +G +
Sbjct: 806 HLKGLAPNVISYNILIDGYCKNGNTREALDLRNKMLKEGISPSLITYSALIYGFCKQGDM 865

Query: 458 EKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEI 494
            KA +LL +M E   +  + I    K+ + +VK  E+
Sbjct: 866 GKATNLLDEMRELFAD--QNIAKFVKLVEGHVKCGEV 900



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 100/381 (26%), Positives = 167/381 (43%), Gaps = 48/381 (12%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L E   + G++ D  +  +L++ +C++  + DA      +L      ++     LI G C
Sbjct: 311 LREMERSEGMVLDEYAYGVLIDGYCRVCKMDDAVRLRDEMLNVGLRMNLFICNALINGYC 370

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
             G+ +EA  L  + V +D  P        Y++++DG C++G V K   ++ +M   GI 
Sbjct: 371 KNGQVSEAERLLMRMVDWDLEPESYS----YSTLMDGFCREGLVTKAISVYNEMLRVGIQ 426

Query: 229 PDAFVYNSLIRVYCCAVNWEDA---------KGNT----SAALELHEEFVNGNGELGVIC 275
            +   +NSL++  C    +EDA         +G T    S    L   F  G     +  
Sbjct: 427 SNVVTHNSLLKGLCRVGAFEDALHVWHLMLKRGVTPDEVSYCTLLDLLFKMGEFFRALAL 486

Query: 276 HPDVLS---------YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
             D+L+         + ++IN  CK   + +A+E F  MK  G  PD V Y +LIDGYC 
Sbjct: 487 WNDILARGYGRSTYAFNTMINGFCKMEKMIEAEETFNRMKELGFEPDGVTYRTLIDGYCK 546

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC 386
           +G +++A K+   +E E  +P    YN+LI    K +K  E + L  EM   G+ P    
Sbjct: 547 LGNVEEAFKVKEKMEKEAILPSIELYNSLIGGLFKSKKTREVMDLLSEMCLKGLSP---- 602

Query: 387 ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTV 446
                             ++  +  L+ G C   RL  A+  +  +   G  PNV+  + 
Sbjct: 603 ------------------NVVTYGTLIAGWCDEGRLDKAFTAYFDMIEKGFAPNVIICSK 644

Query: 447 MICGLCIEGGIEKAYDLLPDM 467
           ++  L   G I++A  LL  M
Sbjct: 645 IVSSLYRLGRIDEANMLLQKM 665



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 101/386 (26%), Positives = 167/386 (43%), Gaps = 50/386 (12%)

Query: 81  MQPTPFMPS---FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           M+    +PS   +NSL+G L   K     + L   +   GL P+ V+   L+  +C    
Sbjct: 560 MEKEAILPSIELYNSLIGGLFKSKKTREVMDLLSEMCLKGLSPNVVTYGTLIAGWCDEGR 619

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           +  AF A   ++ K F+P+V+    ++  L   G+  EA+ L  K V  D        V 
Sbjct: 620 LDKAFTAYFDMIEKGFAPNVIICSKIVSSLYRLGRIDEANMLLQKMVNLD--------VF 671

Query: 198 CYASIIDGLCK--DGFVNKVRVL-FLDMKGRGI-YPDAFVYNSLIRVYCCAVNWEDAKGN 253
                 D L K  DG ++  ++   LD   +    P++ VYN  I   C +   +DAK  
Sbjct: 672 LDHGYFDRLHKADDGNLDSQKIADTLDESSKSFSLPNSVVYNIAIAGLCKSGKVDDAKKI 731

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
            S+ L      + G         PD  +YC++I+       V+ A  L  +M  RG+ P+
Sbjct: 732 FSSLL------LRG-------FSPDNFTYCTLIHGYSAAGNVNDAFSLRDEMLKRGLAPN 778

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           ++ Y++LI+G C  G +D A+KLF  +  +G  P+  SYN LI+ Y K     EAL L  
Sbjct: 779 IITYNALINGLCKSGNLDRAQKLFDKLHLKGLAPNVISYNILIDGYCKNGNTREALDLRN 838

Query: 374 EMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
           +M+  G+ P                       L  ++ L+ G CK   +  A  L  ++ 
Sbjct: 839 KMLKEGISP----------------------SLITYSALIYGFCKQGDMGKATNLLDEMR 876

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEK 459
               + N+  +  ++ G    G ++K
Sbjct: 877 ELFADQNIAKFVKLVEGHVKCGEVKK 902



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 111/478 (23%), Positives = 202/478 (42%), Gaps = 77/478 (16%)

Query: 58  SENSKSGEVELNDALCFFNYMIHMQPTPFMPS-FNSLLGALAGKKYYVNFICLSERLNTI 116
           S+N+ S  V  N+ +  F      +   F P+ F+ +L     K    N + + + +  +
Sbjct: 124 SKNNYSSLVVWNELVRVF------EDFKFSPTVFDMILKIYCEKGMIKNALHVFDNMGKL 177

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G +P   S N L++   +    S+A +    I R    PDV T   ++   C  G    A
Sbjct: 178 GCVPSLRSCNRLLSSLVRKGESSNAILVYDHINRLGIVPDVFTCSIMVNAYCKDGWVNVA 237

Query: 177 SGLFTK--FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVY 234
                +  ++ F+       NV+ Y S+IDG    G + +  ++   M  RGI  +    
Sbjct: 238 VDFVKEMDYLGFEL------NVVTYNSLIDGCVSIGDMERAEMVLKLMGERGILRNKVTL 291

Query: 235 NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294
             LI+ YC     E+A+      +E  E  V            D  +Y  +I+  C+   
Sbjct: 292 TLLIKGYCRQCKLEEAE-KVLREMERSEGMV-----------LDEYAYGVLIDGYCRVCK 339

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           +D A  L  +M + G+  ++ + ++LI+GYC  G++ +A +L + +      P++ SY+T
Sbjct: 340 MDDAVRLRDEMLNVGLRMNLFICNALINGYCKNGQVSEAERLLMRMVDWDLEPESYSYST 399

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVR--------------------------------- 381
           L++ + +   V +A+S+Y EM+ +G++                                 
Sbjct: 400 LMDGFCREGLVTKAISVYNEMLRVGIQSNVVTHNSLLKGLCRVGAFEDALHVWHLMLKRG 459

Query: 382 --PDN-------SCILEAAELFRTLH------NTKFELDLTVFNCLVDGLCKSWRLRSAW 426
             PD          + +  E FR L          +      FN +++G CK  ++  A 
Sbjct: 460 VTPDEVSYCTLLDLLFKMGEFFRALALWNDILARGYGRSTYAFNTMINGFCKMEKMIEAE 519

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKM 484
           E F ++   G EP+ VTY  +I G C  G +E+A+ +   ME++    L +IEL + +
Sbjct: 520 ETFNRMKELGFEPDGVTYRTLIDGYCKLGNVEEAFKVKEKMEKE--AILPSIELYNSL 575


>gi|15222491|ref|NP_176550.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|332195999|gb|AEE34120.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 257

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 149/281 (53%), Gaps = 35/281 (12%)

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
           + ++  +V+   +I+D LCKDG     + LF +M  +GI+P+   YN +I  +C +  W 
Sbjct: 3   QSHIKADVVISTAIVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWS 62

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
           DA         + E+ +N          PD++++ ++IN+  K+  V +A+E++ +M   
Sbjct: 63  DAD---QLLRHMIEKQIN----------PDIVTFSALINAFVKERKVSEAEEIYKEMLRW 109

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
            I P  + Y+S+IDG+C   R+DDA+++  S+ S+GC PD  +++TLIN Y K ++V+  
Sbjct: 110 SIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNG 169

Query: 369 LSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
           + ++ EM   G+                + NT        +  L+ G C+   L +A +L
Sbjct: 170 MEIFCEMHRRGI----------------VANT------VTYTTLIHGFCQVGDLDAAQDL 207

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
             ++   G  P+ +T+  M+ GLC +  + KA+ +L D+++
Sbjct: 208 LNEMISCGVAPDYITFHCMLAGLCSKKELRKAFAILEDLQK 248



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 128/280 (45%), Gaps = 39/280 (13%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
            DVV    ++  LC  G    A  LFT+         + PNV+ Y  +ID  C  G  + 
Sbjct: 8   ADVVISTAIVDRLCKDGNHINAQNLFTEMH----EKGIFPNVLTYNCMIDSFCHSGRWSD 63

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
              L   M  + I PD   +++LI  +         +   S A E+++E +  +      
Sbjct: 64  ADQLLRHMIEKQINPDIVTFSALINAFV-------KERKVSEAEEIYKEMLRWS------ 110

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
             P  ++Y S+I+  CK   VD AK +   M S+G  PDVV +S+LI+GYC   R+D+  
Sbjct: 111 IFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGM 170

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
           ++F  +   G + +T +Y TLI+ + ++  ++ A  L  EMIS GV P            
Sbjct: 171 EIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAP------------ 218

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
                     D   F+C++ GLC    LR A+ + + L +
Sbjct: 219 ----------DYITFHCMLAGLCSKKELRKAFAILEDLQK 248



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 119/273 (43%), Gaps = 52/273 (19%)

Query: 103 YVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGC 162
           ++N   L   ++  G+ P+ ++ N +++ FC     SDA   L  ++ K  +PD+VT   
Sbjct: 26  HINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFSA 85

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           LI     + K +EA  ++ + +    R ++ P  I Y S+IDG CK   V+  + +   M
Sbjct: 86  LINAFVKERKVSEAEEIYKEML----RWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSM 141

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
             +G  PD   +++LI  YC                                        
Sbjct: 142 ASKGCSPDVVTFSTLINGYC---------------------------------------- 161

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
                   K   VD   E+F +M  RGI+ + V Y++LI G+C +G +D A+ L   + S
Sbjct: 162 --------KAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMIS 213

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
            G  PD  +++ ++      +++ +A ++  ++
Sbjct: 214 CGVAPDYITFHCMLAGLCSKKELRKAFAILEDL 246



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 107/237 (45%), Gaps = 40/237 (16%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
            DV+   +I++ LCKD     A+ LF +M  +GI P+V+ Y+ +ID +C  GR  DA +L
Sbjct: 8   ADVVISTAIVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQL 67

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
              +  +   PD  +++ LIN++ K  KV EA  +Y EM+   + P              
Sbjct: 68  LRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTT------------ 115

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
                       +N ++DG CK  R+  A  +   +   G  P+VVT++ +I G C    
Sbjct: 116 ----------ITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKR 165

Query: 457 IEKAYDLLPDMEEK------------------IRECLKAIELLHKMAKRYVKPDEIT 495
           ++   ++  +M  +                  + +   A +LL++M    V PD IT
Sbjct: 166 VDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYIT 222



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 18/142 (12%)

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
            +  + D+ +   +VD LCK     +A  LF ++   G  PNV+TY  MI   C  G   
Sbjct: 3   QSHIKADVVISTAIVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWS 62

Query: 459 KAYDLLPDMEEKI------------------RECLKAIELLHKMAKRYVKPDEITVSILE 500
            A  LL  M EK                   R+  +A E+  +M +  + P  IT + + 
Sbjct: 63  DADQLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMI 122

Query: 501 ELLNKDENCHECMNLLPSFLSR 522
           +   K +   +   +L S  S+
Sbjct: 123 DGFCKQDRVDDAKRMLDSMASK 144


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 120/464 (25%), Positives = 203/464 (43%), Gaps = 65/464 (14%)

Query: 75  FNYMIHMQPTPFMP---SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131
           F  +  M    F+P   ++  ++  L   K       L + +   G+ PD  +  IL++ 
Sbjct: 437 FQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDS 496

Query: 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
           FCK   +  A      +     SP+VVT   L+       +  +A  +F + V   C PN
Sbjct: 497 FCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPN 556

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG----------------IYPDAFVYN 235
            +     Y+++IDGLCK G + K   ++  + G                  I P+   Y 
Sbjct: 557 AVT----YSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYG 612

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           +LI   C A    DA          HE     +  L   C P+ + Y ++I+  CK   +
Sbjct: 613 ALIDGLCKAQKVSDA----------HELL---DAMLAAGCEPNQIVYDALIDGFCKIGKI 659

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           D A+E+FL M   G +P V  Y+SLID     GR+D A K+   + ++ C P+  +Y  +
Sbjct: 660 DNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAM 719

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDG 415
           I+  SK+ ++E+AL+L   M   G  P                      ++  +  L+DG
Sbjct: 720 IDGLSKVGEIEKALNLLSLMEEKGCSP----------------------NVVTYTALIDG 757

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL 475
           L K+ +  ++ +LFK++   G  PN VTY V+I   C  G +++A+ LL +M  K     
Sbjct: 758 LGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEM--KHTHWP 815

Query: 476 KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519
           K ++  H   + + K    ++ +LEE+       HE + + P +
Sbjct: 816 KHLQGYHCAVQGFSKKFIASLGLLEEM-----ESHETVPIAPVY 854



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 120/522 (22%), Positives = 198/522 (37%), Gaps = 111/522 (21%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P   ++N+L+  LA          + + ++  G   D  ++       CK+   +DA   
Sbjct: 202 PSAVTYNALVQVLASAGQVEMGFRVQKEMSASGFCMDRSTIGYFAQALCKVGRWADA--- 258

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI----------- 193
           L  + ++ F+ D V    +I GL     F EA     +     C PNV+           
Sbjct: 259 LNMLEKEDFNLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSCIPNVVTYRTLLSGFLK 318

Query: 194 --------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233
                               PN   + S++ G C  G       LF  M   G  P    
Sbjct: 319 KKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVA 378

Query: 234 YNSLIRVYC-------------------------CAVNWEDAK---------GNTSAALE 259
           YN  I   C                         C +N  +           G    A +
Sbjct: 379 YNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGVGKFEKAFQ 438

Query: 260 LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSS 319
           + +E +      G +  PD  +Y  +I  LC+   V+K+  LF +MK  G+ PDV  Y+ 
Sbjct: 439 ILKEMMRK----GFV--PDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTI 492

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           LID +C  G I+ AR  F  + S GC P+  +Y  L+++Y K +++ +A  ++  M+   
Sbjct: 493 LIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAA 552

Query: 380 VRP---------DNSC----ILEAAELFRTLHNTKFELD----------------LTVFN 410
             P         D  C    I +A E++  L  T   ++                +  + 
Sbjct: 553 CYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYG 612

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            L+DGLCK+ ++  A EL   +   G EPN + Y  +I G C  G I+ A ++   M   
Sbjct: 613 ALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMT-- 670

Query: 471 IREC--LKAIELLHKMAKRYVKPD--EITVSILEELLNKDEN 508
             +C  L ++     +  R  K    ++ + +L E+LN   N
Sbjct: 671 --KCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCN 710



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 101/441 (22%), Positives = 178/441 (40%), Gaps = 85/441 (19%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           RL   G  P  V+ N L+        V   F     +    F  D  T+G   + LC  G
Sbjct: 194 RLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASGFCMDRSTIGYFAQALCKVG 253

Query: 172 KFTEA-------------------------SGLFTKFVAFDCR---PNVIPNVICYASII 203
           ++ +A                         + LF + ++F  R    + IPNV+ Y +++
Sbjct: 254 RWADALNMLEKEDFNLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSCIPNVVTYRTLL 313

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG--NTSAALELH 261
            G  K       + +   M   G  P+  ++NSL+  YC A ++  A    N        
Sbjct: 314 SGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGSP 373

Query: 262 EEFVNGNGELGVIC-----------------HPDVLSYCSIINS---------LCKDVLV 295
             +V  N  +G IC                 + ++L+   ++N          LC     
Sbjct: 374 PGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGVGKF 433

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           +KA ++  +M  +G +PD   Y+ +I   C   +++ +  LF  ++  G  PD  +Y  L
Sbjct: 434 EKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTIL 493

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKF 402
           I+S+ K   +E+A S + EM S+G  P+             +  +++A ++F  + +   
Sbjct: 494 IDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAAC 553

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE----------------PNVVTYTV 446
             +   ++ L+DGLCK+  ++ A E+++KL                      PNVVTY  
Sbjct: 554 YPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGA 613

Query: 447 MICGLCIEGGIEKAYDLLPDM 467
           +I GLC    +  A++LL  M
Sbjct: 614 LIDGLCKAQKVSDAHELLDAM 634



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 132/337 (39%), Gaps = 80/337 (23%)

Query: 114 NTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF 173
           +T  + P+ V+   L++  CK   VSDA   L  +L     P+ +    LI G C  GK 
Sbjct: 600 DTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKI 659

Query: 174 TEASGLFTKFVAFDCRPNVI-------------------------------PNVICYASI 202
             A  +F +       P+V                                PNV+ Y ++
Sbjct: 660 DNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAM 719

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
           IDGL K G + K   L   M+ +G  P+   Y +LI       +     G   A+L+L +
Sbjct: 720 IDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALI-------DGLGKTGKADASLKLFK 772

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK---------------- 306
           + +N  G     C P+ ++Y  +IN  C   L+D+A  L  +MK                
Sbjct: 773 Q-MNSKG-----CAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQ 826

Query: 307 -----------------SRGIIPDVVVYSSLIDGYCLMGRIDDARKL---FVSIESEGCI 346
                            S   +P   VY  LID +   GR++ A +L    V + S   +
Sbjct: 827 GFSKKFIASLGLLEEMESHETVPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLNM 886

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
             T  Y +LI +     +VEEA +LY EM   G+ PD
Sbjct: 887 TSTGMYASLIQALCLASQVEEAFTLYTEMTRKGIVPD 923



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 89/446 (19%), Positives = 166/446 (37%), Gaps = 96/446 (21%)

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTL----GCLIRGLCMQGKFTEASGLFTKFVA 185
           +   +++G  D      R+LR++   D   L      L+R  C  G + EA     +   
Sbjct: 138 DALAEILGFEDPARTAERLLREIGEDDREVLRRLLNVLVRRCCRHGLWDEALEELGRLKD 197

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
           F  RP+ +     Y +++  L   G V     +  +M   G   D        +  C   
Sbjct: 198 FGYRPSAVT----YNALVQVLASAGQVEMGFRVQKEMSASGFCMDRSTIGYFAQALCKVG 253

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
            W DA       LE  E+F           + D +    +I+ L +  L ++A      M
Sbjct: 254 RWADALN----MLE-KEDF-----------NLDTVLCTQMISGLMEASLFNEAMSFLHRM 297

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
           +    IP+VV Y +L+ G+    +    +++   + +EGC P+ S +N+L++ Y      
Sbjct: 298 RCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDY 357

Query: 366 EEALSLYGEMISMGVRPD-----------------------------------NSCIL-- 388
             A  L+  M + G  P                                     SC+L  
Sbjct: 358 AYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNK 417

Query: 389 -----------------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
                            +A ++ + +    F  D + +  ++  LC++ ++  ++ LF++
Sbjct: 418 VNTANFSRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQE 477

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRE 473
           + R G  P+V TYT++I   C  G IE+A     +M                    K ++
Sbjct: 478 MKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQ 537

Query: 474 CLKAIELLHKMAKRYVKPDEITVSIL 499
            ++A ++ H+M      P+ +T S L
Sbjct: 538 LIQAHDIFHRMVDAACYPNAVTYSAL 563



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 113/261 (43%), Gaps = 48/261 (18%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           LSE LN     P+ V+   +++   K+  +  A   L  +  K  SP+VVT   LI GL 
Sbjct: 701 LSEMLND-SCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLG 759

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG---- 224
             GK   +  LF +  +  C PN +     Y  +I+  C  G +++  +L  +MK     
Sbjct: 760 KTGKADASLKLFKQMNSKGCAPNYVT----YRVLINHCCAAGLLDEAHLLLDEMKHTHWP 815

Query: 225 ---RGIY--------------------------PDAFVYNSLIRVYCCAVNWEDAKGNTS 255
              +G +                          P A VY  LI  +  A       G   
Sbjct: 816 KHLQGYHCAVQGFSKKFIASLGLLEEMESHETVPIAPVYGMLIDSFSKA-------GRLE 868

Query: 256 AALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV 315
            ALELH+E V  +  L +        Y S+I +LC    V++A  L+ +M  +GI+PD++
Sbjct: 869 TALELHKELVEVSSSLNMT---STGMYASLIQALCLASQVEEAFTLYTEMTRKGIVPDLI 925

Query: 316 VYSSLIDGYCLMGRIDDARKL 336
           V+ SL+ G   + + D+A +L
Sbjct: 926 VFVSLVKGLIEVNKWDEALQL 946


>gi|5738362|emb|CAB52870.1| putative protein [Arabidopsis thaliana]
 gi|7268785|emb|CAB78991.1| putative protein [Arabidopsis thaliana]
          Length = 1302

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/435 (26%), Positives = 194/435 (44%), Gaps = 48/435 (11%)

Query: 111  ERLNTIGLLPDFVSLNIL-MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCM 169
            + ++  G++PD  S  ++ + CF +   + +A   L  ++++ F PD  T   ++  LC 
Sbjct: 807  DEMSVRGVVPDSSSYKLMVIGCF-RDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCE 865

Query: 170  QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYP 229
             G    A   F K +    +PN+I     + S+IDGLCK G + +   +  +M   G  P
Sbjct: 866  NGLVNRAIWYFRKMIDLGFKPNLIN----FTSLIDGLCKKGSIKQAFEMLEEMVRNGWKP 921

Query: 230  DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSL 289
            + + + +LI   C        +G T  A  L  + V  +        P+V +Y S+I   
Sbjct: 922  NVYTHTALIDGLC-------KRGWTEKAFRLFLKLVRSD-----TYKPNVHTYTSMIGGY 969

Query: 290  CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
            CK+  +++A+ LF  MK +G+ P+V  Y++LI+G+C  G    A +L   +  EG +P+ 
Sbjct: 970  CKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNI 1029

Query: 350  SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRT 396
             +YN  I+S  K  +  EA  L  +  S G+  D              + I +A   F  
Sbjct: 1030 YTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCR 1089

Query: 397  LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
            ++ T FE D+ + N L+   C+  +++ +  LF+ +   G  P   TYT MI   C EG 
Sbjct: 1090 MNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGD 1149

Query: 457  IEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
            I    DL             A++  H M +    PD  T   L   L K     E   L 
Sbjct: 1150 I----DL-------------ALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLY 1192

Query: 517  PSFLSRNQEESKLTR 531
             + + R     ++TR
Sbjct: 1193 EAMIDRGLSPPEVTR 1207



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 145/339 (42%), Gaps = 44/339 (12%)

Query: 160  LGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLF 219
            + C++R     G+  EA G+            + P+ I    +++   + G +     +F
Sbjct: 751  MRCMLRNFSEIGRLNEAVGMVMDMQ----NQGLTPSSITMNCVLEIAVELGLIEYAENVF 806

Query: 220  LDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGE----LGVIC 275
             +M  RG+ PD+  Y   + V  C  + +  + +      +   F+  N      L  +C
Sbjct: 807  DEMSVRGVVPDSSSYK--LMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALC 864

Query: 276  H--------------------PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV 315
                                 P+++++ S+I+ LCK   + +A E+  +M   G  P+V 
Sbjct: 865  ENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVY 924

Query: 316  VYSSLIDGYCLMGRIDDARKLFVS-IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
             +++LIDG C  G  + A +LF+  + S+   P+  +Y ++I  Y K +K+  A  L+  
Sbjct: 925  THTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSR 984

Query: 375  MISMGVRPDNSCIL-------------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
            M   G+ P+ +                 A EL   + +  F  ++  +N  +D LCK  R
Sbjct: 985  MKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSR 1044

Query: 422  LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
               A+EL  K    G E + VTYT++I   C +  I +A
Sbjct: 1045 APEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQA 1083



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 98/183 (53%), Gaps = 13/183 (7%)

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           +++A  + +DM+++G+ P  +  + +++    +G I+ A  +F  +   G +PD+SSY  
Sbjct: 764 LNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKL 823

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDN-SCIL------------EAAELFRTLHNTK 401
           ++    +  K++EA      MI  G  PDN +C L             A   FR + +  
Sbjct: 824 MVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLG 883

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
           F+ +L  F  L+DGLCK   ++ A+E+ +++ R G +PNV T+T +I GLC  G  EKA+
Sbjct: 884 FKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAF 943

Query: 462 DLL 464
            L 
Sbjct: 944 RLF 946



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 151/387 (39%), Gaps = 46/387 (11%)

Query: 85   PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
            P + ++ S++G    +        L  R+   GL P+  +   L+N  CK      A+  
Sbjct: 957  PNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYEL 1016

Query: 145  LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
            +  +  + F P++ T    I  LC + +  EA  L  K  AF C   +  + + Y  +I 
Sbjct: 1017 MNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNK--AFSC--GLEADGVTYTILIQ 1072

Query: 205  GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
              CK   +N+    F  M   G   D  + N LI  +C               ++  E  
Sbjct: 1073 EQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFC-----------RQKKMKESERL 1121

Query: 265  VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
                  LG+I  P   +Y S+I+  CK+  +D A + F +MK  G +PD   Y SLI G 
Sbjct: 1122 FQLVVSLGLI--PTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGL 1179

Query: 325  CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
            C    +D+A KL+ ++   G  P   +  TL   Y K      A+ L        + P  
Sbjct: 1180 CKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRNDSANAMIL--------LEP-- 1229

Query: 385  SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
               L+     RT+              LV  LC   ++  A   F+KL       + VT 
Sbjct: 1230 ---LDKKLWIRTVR------------TLVRKLCSEKKVGVAALFFQKLLEKDSSADRVTL 1274

Query: 445  TVMICGLCIEGGIEKAYDLLPDMEEKI 471
                   C E G     +L+ D+ E+I
Sbjct: 1275 AAFTTA-CSESG---KNNLVTDLTERI 1297


>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g09680-like [Glycine max]
          Length = 509

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 180/385 (46%), Gaps = 56/385 (14%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  P+F   N+LM+ FCK+ GV  A +    I ++   P VV+   LI G C  G   E 
Sbjct: 137 GYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEE- 195

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
            G   K V    R  V P+V  ++++I+GLCK+G +++  +LF +M G+G+ P+   +  
Sbjct: 196 -GFRLKGVMESER--VCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTV 252

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI   C         G    AL+      N    L     PD+++Y ++IN LCK   + 
Sbjct: 253 LIDGQC-------KGGKVDLALK------NFQMMLAQGVRPDLVTYNALINGLCKVGDLK 299

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A+ L  +M + G+ PD + +++LIDG C  G ++ A ++   +  EG   D  ++  LI
Sbjct: 300 EARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLI 359

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           +   +  +V +A  +  +M+S G +PD+                        +  +VD  
Sbjct: 360 SGLCRDGRVHDAERMLRDMLSAGFKPDDP----------------------TYTMVVDCF 397

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLK 476
           CK   +   ++L K++   G  P VVTY  ++ GLC +G ++ A                
Sbjct: 398 CKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNAK--------------- 442

Query: 477 AIELLHKMAKRYVKPDEITVSILEE 501
              LL  M    V P++IT +IL E
Sbjct: 443 --MLLDAMLNVGVAPNDITYNILLE 465



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 170/390 (43%), Gaps = 39/390 (10%)

Query: 66  VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
           VEL  +  F+  ++     P    FN L+          +   + + +   GL P  VS 
Sbjct: 121 VELERSWAFYLEVLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSF 180

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           N L++  CK   V + F   G +  +   PDV T   LI GLC +G+  E S LF +   
Sbjct: 181 NTLISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEM-- 238

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
             C   ++PN + +  +IDG CK G V+     F  M  +G+ PD   YN+LI   C   
Sbjct: 239 --CGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVG 296

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
           + ++A+             VN     G+   PD +++ ++I+  CK   ++ A E+   M
Sbjct: 297 DLKEAR-----------RLVNEMSASGL--RPDRITFTTLIDGCCKYGDMESALEIKRRM 343

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
              GI  D V ++ LI G C  GR+ DA ++   + S G  PD  +Y  +++ + K   V
Sbjct: 344 VEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNV 403

Query: 366 EEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
                L  EM S G  P                       +  +N L++GLCK  ++++A
Sbjct: 404 XMGFKLLKEMQSDGHVP----------------------GVVTYNALMNGLCKQGQVKNA 441

Query: 426 WELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
             L   +   G  PN +TY +++ G    G
Sbjct: 442 KMLLDAMLNVGVAPNDITYNILLEGHSKHG 471



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 134/311 (43%), Gaps = 47/311 (15%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + +F++L+  L  +        L + +   GL+P+ V+  +L++  CK   V  A   
Sbjct: 210 PDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKN 269

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP---------- 194
              +L +   PD+VT   LI GLC  G   EA  L  +  A   RP+ I           
Sbjct: 270 FQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCK 329

Query: 195 ---------------------NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233
                                + + +  +I GLC+DG V+    +  DM   G  PD   
Sbjct: 330 YGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPT 389

Query: 234 YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDV 293
           Y  ++  +C        KGN     +L +E +  +G +     P V++Y +++N LCK  
Sbjct: 390 YTMVVDCFC-------KKGNVXMGFKLLKE-MQSDGHV-----PGVVTYNALMNGLCKQG 436

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353
            V  AK L   M + G+ P+ + Y+ L++G+   G   D   +F S   +G + D +SY 
Sbjct: 437 QVKNAKMLLDAMLNVGVAPNDITYNILLEGHSKHGSSVDV-DIFNS--EKGLVKDYASYT 493

Query: 354 TLINSYSKIEK 364
            L+N  SK  K
Sbjct: 494 ALVNESSKTSK 504



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 117/262 (44%), Gaps = 31/262 (11%)

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           + V ++++   +L++   G  P+   ++ L+ G+C +G +  AR +F  I   G  P   
Sbjct: 119 RPVELERSWAFYLEVLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVV 178

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTL 397
           S+NTLI+   K   VEE   L G M S  V PD                + E + LF  +
Sbjct: 179 SFNTLISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEM 238

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                  +   F  L+DG CK  ++  A + F+ +   G  P++VTY  +I GLC  G +
Sbjct: 239 CGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDL 298

Query: 458 EKAYDLLPDMEEK------------IRECLK------AIELLHKMAKRYVKPDEITVSIL 499
           ++A  L+ +M               I  C K      A+E+  +M +  ++ D++  ++L
Sbjct: 299 KEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVL 358

Query: 500 EELLNKDENCHECMNLLPSFLS 521
              L +D   H+   +L   LS
Sbjct: 359 ISGLCRDGRVHDAERMLRDMLS 380


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 131/508 (25%), Positives = 212/508 (41%), Gaps = 69/508 (13%)

Query: 80  HMQPTPFMPSF---NSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMI 136
            M  T  MP     N +L  L   +     I L   + ++G  P  VS N +++    + 
Sbjct: 10  EMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASID 69

Query: 137 GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNV 196
            + +A+     ++     PDV+    LI G C  G+      L  + +         P+V
Sbjct: 70  KMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQAL-----KRFRPDV 124

Query: 197 ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSA 256
             Y S+I G CK G ++    +  +M   G  PDA  Y  LI   C         G    
Sbjct: 125 FLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLC-------KLGRVDE 177

Query: 257 ALELHE------------------EFVNGNGELGVIC-----------HPDVLSYCSIIN 287
           A EL E                  E ++ +G+L   C            P +    S+I 
Sbjct: 178 AYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIF 237

Query: 288 SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
           +LCK   VD+A E++  + ++ +    V Y+SL+DGYC +GR+DD  KL + +      P
Sbjct: 238 ALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFP 297

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---SCILEAAELFRTLHNTKF-- 402
           D  +YN L+  +S+  ++++AL L+  + S G +P+    + I++     + +   K   
Sbjct: 298 DIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFF 357

Query: 403 --ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
              LD+  +  ++ GL  S R+  A ELF+KL   G  PNVV YT +I GL   G IE  
Sbjct: 358 DEALDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDG 417

Query: 461 YDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEEL 502
                DM                    K +    A ++  +M ++   PD IT + L + 
Sbjct: 418 LKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDG 477

Query: 503 LNKDENCHECMNLLPSFLSRNQEESKLT 530
            +K     E   LL   L++  E + +T
Sbjct: 478 FSKASKMDEARKLLDVMLTKGPEPTAVT 505



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 172/366 (46%), Gaps = 32/366 (8%)

Query: 108 CLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGL 167
           CL E ++T GL+PD V+ NI++N  CK   +  A      +      P +V+   +I GL
Sbjct: 7   CLKE-MHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGL 65

Query: 168 CMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI 227
               K  EA   F   +   C     P+VI + ++I G CK G   +V  + L+   +  
Sbjct: 66  ASIDKMDEAYKFFNSMIDNGCE----PDVIAFTTLIHGFCKAG-QPQVGHMLLNQALKRF 120

Query: 228 YPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIIN 287
            PD F+Y S+I  YC A       G+     ++ EE       L   C PD  +Y  +I+
Sbjct: 121 RPDVFLYTSVIHGYCKA-------GDLDTGFKILEEM------LAAGCIPDAAAYFVLID 167

Query: 288 SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
            LCK   VD+A ELF  M+  G + D V + +LI+     G++D+A +L+  +   G  P
Sbjct: 168 PLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEP 227

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCILEAAELFRTLHNTKFE 403
                ++LI +  K  KV+EA  +Y  +++  V       NS +    +L R     K  
Sbjct: 228 YLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLL 287

Query: 404 L---------DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
           L         D+  +N LV G  ++ RL  A ELFK L  YG +PN  TYT +I GL   
Sbjct: 288 LQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDA 347

Query: 455 GGIEKA 460
             +E+A
Sbjct: 348 QRMEEA 353



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 173/371 (46%), Gaps = 42/371 (11%)

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
           +P   +  ++++  CK   + DA     ++++K   PD +T   LI G     K  EA  
Sbjct: 430 VPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARK 489

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           L    V     P   P  + Y SI+ G CK   +N+ + +   M+ RG  P  F++ SL+
Sbjct: 490 LLD--VMLTKGPE--PTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLL 545

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
             Y        +KG    A ++  E           C PDV+ Y S+I+ L     V +A
Sbjct: 546 SYYL-------SKGRAEEAYQVLTEMTARG------CAPDVILYTSLIDLLFSTGRVPEA 592

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
           + +F  M  +G  PD + Y ++I  +  +G ++ A ++   +   G  PD  +YN+L++ 
Sbjct: 593 RHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDG 652

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
           Y K+E+V++A  +Y  M++ G++P+                         FN L+ GL K
Sbjct: 653 YVKLERVDQAFGVYDRMVASGIKPNA----------------------VTFNVLMHGLFK 690

Query: 419 SWRLRSAWELFKK-LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK--IRECL 475
             +   A+ LFK+ L +    P +V+YT++I GL   G + +A+    +M ++  I EC 
Sbjct: 691 DGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECH 750

Query: 476 KAIELLHKMAK 486
               L++ +AK
Sbjct: 751 TYTSLIYSLAK 761



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 113/456 (24%), Positives = 189/456 (41%), Gaps = 60/456 (13%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L ER+   G L D+V+   L+        + +A      ++ + + P +     LI  LC
Sbjct: 181 LFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALC 240

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
             GK  EA+ ++   VA      V  + + Y S++DG CK G V+    L L M     +
Sbjct: 241 KAGKVDEANEIYQTVVA----KKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNF 296

Query: 229 PDAFVYNSLIRVYCCAVNWEDA------------KGNTSAALELHEEFVNGN--GELGVI 274
           PD   YN L+  +  A   +DA            K N +    + +   +     E    
Sbjct: 297 PDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAF 356

Query: 275 CHP--DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
                DV+SY ++I  L     +D+A ELF  +K+ G  P+VV Y+++IDG    GRI+D
Sbjct: 357 FDEALDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIED 416

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392
             K F  +    C+P  ++Y  +I+   K + + +A  ++ +M+  G  PD         
Sbjct: 417 GLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDT-------- 468

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
                           +  L+DG  K+ ++  A +L   +   GPEP  VTY  ++ G C
Sbjct: 469 --------------ITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFC 514

Query: 453 IEGGIEKAYDLLPDMEEKIRE------------------CLKAIELLHKMAKRYVKPDEI 494
               I +A +++  M E+  E                    +A ++L +M  R   PD I
Sbjct: 515 KLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVI 574

Query: 495 TVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
             + L +LL       E  ++  S + +      LT
Sbjct: 575 LYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALT 610



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 121/530 (22%), Positives = 219/530 (41%), Gaps = 78/530 (14%)

Query: 53  LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLS 110
           L++ LS + K     L++A   +  MI     P++   +SL+ AL  AGK    N I  +
Sbjct: 200 LIEALSNHGK-----LDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQT 254

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
                +      V+ N LM+ +CK+  V D    L +++     PD+ T   L+ G    
Sbjct: 255 VVAKKVA--TSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRA 312

Query: 171 GKFTEASGLFTKFVAFDCRPNVIP-------------------------NVICYASIIDG 205
            +  +A  LF    ++ C+PN                            +VI Y ++I G
Sbjct: 313 NRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEALDVISYTTVIKG 372

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
           L     +++   LF  +K  G  P+   Y ++I     A   ED   N         E +
Sbjct: 373 LADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNF--------EDM 424

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
           +G+      C P   +Y  +I+ LCK  ++  A ++F  M  +G +PD + Y++LIDG+ 
Sbjct: 425 SGSS-----CVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFS 479

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP--- 382
              ++D+ARKL   + ++G  P   +Y ++++ + K++ + EA  +  +M   G  P   
Sbjct: 480 KASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLF 539

Query: 383 ----------DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
                           EA ++   +       D+ ++  L+D L  + R+  A  +F  +
Sbjct: 540 IFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSM 599

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKA------------------YDLLPDMEEKIREC 474
              G  P+ +TY  +I      G +E A                  Y+ L D   K+   
Sbjct: 600 IEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERV 659

Query: 475 LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQ 524
            +A  +  +M    +KP+ +T ++L   L KD       +L    L +++
Sbjct: 660 DQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDE 709



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 115/447 (25%), Positives = 185/447 (41%), Gaps = 63/447 (14%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G +E  D L  F  M      P   ++  ++  L   +   +   + E++   G +PD
Sbjct: 410 KAGRIE--DGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPD 467

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            ++   L++ F K   + +A   L  +L K   P  VT G ++ G C      EA  +  
Sbjct: 468 TITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIA 527

Query: 182 KFVAFDCRPNVI-------------------------------PNVICYASIIDGLCKDG 210
           +     C P +                                P+VI Y S+ID L   G
Sbjct: 528 QMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTG 587

Query: 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGE 270
            V + R +F  M  +G  PDA  Y ++I+ +          GN  AA E+ E        
Sbjct: 588 RVPEARHVFDSMIEKGCAPDALTYGTIIQNF-------SKIGNVEAAGEILELMAKSG-- 638

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
                 PD  +Y S+++   K   VD+A  ++  M + GI P+ V ++ L+ G    G+ 
Sbjct: 639 ----VGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKT 694

Query: 331 DDARKLFVS-IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------ 383
           D A  LF   +E +   P   SY  LI+   K  +V EA S + EMI  G+ P+      
Sbjct: 695 DRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTS 754

Query: 384 -------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
                     I EA +L   +       D+  ++ L+ GL  S  + +AW++F+++ + G
Sbjct: 755 LIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRG 814

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDL 463
             PN VTY V+  G    G   +A DL
Sbjct: 815 CAPNEVTYKVLRRGFRAAG---RALDL 838



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 112/243 (46%), Gaps = 29/243 (11%)

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           +++A +   +M + G++PDVV  + +++G C   +ID A +LF+ + S GC P   SYNT
Sbjct: 1   MEEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNT 60

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPD---------NSCILEAAELFRTLHNT---KF 402
           +I+  + I+K++EA   +  MI  G  PD           C     ++   L N    +F
Sbjct: 61  VISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRF 120

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
             D+ ++  ++ G CK+  L + +++ +++   G  P+   Y V+I  LC  G +++AY 
Sbjct: 121 RPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAY- 179

Query: 463 LLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
                           EL  +M K     D +T   L E L+      E   L    + R
Sbjct: 180 ----------------ELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIER 223

Query: 523 NQE 525
             E
Sbjct: 224 GYE 226


>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 775

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 122/430 (28%), Positives = 193/430 (44%), Gaps = 59/430 (13%)

Query: 89  SFNSLLGALAGKKYYVNFIC-LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGR 147
           +FN+LL  L  K+  +N  C L + +   G+ P+ VS N ++   C+   ++ A      
Sbjct: 369 TFNTLLSWLC-KEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKE 427

Query: 148 ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207
           +L   F+P+ VT   L+ G   +G    A  +F +        N++P       II GLC
Sbjct: 428 MLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMK----DANILPTDTTLGIIIKGLC 483

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
           K G   + R LF     +G  P    YN++I  +         +GN + A  ++ E    
Sbjct: 484 KAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFI-------KEGNINLASNVYREMC-- 534

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
             E+G+   P  ++Y S+I+  CK   +D A +L  DMK +G+  D+  Y +LIDG+C  
Sbjct: 535 --EVGIT--PSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKR 590

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
             +  A +L   +   G  P+   YN++I  +  +  VEEA+ LY +M++ G+       
Sbjct: 591 RDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGI------- 643

Query: 388 LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
                            DL  +  L+DGL KS RL  A ++  ++   G  P+   +TV+
Sbjct: 644 ---------------PCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVL 688

Query: 448 ICGLCIEGGIEKAYDLLPDMEEK-------IRECL-----------KAIELLHKMAKRYV 489
           I GLC +G  E A  +L DM  K       I   L           +A  L  +M  R +
Sbjct: 689 INGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGL 748

Query: 490 KPDEITVSIL 499
            PD IT  IL
Sbjct: 749 VPDNITYDIL 758



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 106/401 (26%), Positives = 193/401 (48%), Gaps = 34/401 (8%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFIC--LSERLNTIGLLPDF 122
           E ++N+A   ++ +I    +P + S+N+++     +K  +N  C    E L+  G  P+ 
Sbjct: 380 EGKMNEACNLWDEVIAKGISPNVVSYNNIILGHC-RKDNINAACKVYKEMLDN-GFTPNA 437

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           V+  ILM+ + K   + +AF    R+      P   TLG +I+GLC  G+  E   LF K
Sbjct: 438 VTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNK 497

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
           FV+    P  +P    Y +IIDG  K+G +N    ++ +M   GI P    Y SLI  +C
Sbjct: 498 FVSQGFVPTCMP----YNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFC 553

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
                   KGN    ++L  + +N     G+    D+ +Y ++I+  CK   +  A EL 
Sbjct: 554 --------KGNN---IDLALKLLNDMKRKGL--KMDIKAYGTLIDGFCKRRDMKSAHELL 600

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
            +++  G+ P+  +Y+S+I G+  M  +++A  L+  + +EG   D  +Y +LI+   K 
Sbjct: 601 NELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKS 660

Query: 363 EKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDLTVF 409
            ++  A  ++ EM+S G+ PD+                  A ++   ++       + ++
Sbjct: 661 GRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIY 720

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
           N L+ G  K   L+ A+ L  ++   G  P+ +TY +++ G
Sbjct: 721 NTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVNG 761



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 157/321 (48%), Gaps = 31/321 (9%)

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           L++G CMQG    A  L  +         ++PN + Y+ +IDG CK+G + K    + +M
Sbjct: 269 LMKGYCMQGNLRSALVLVNEI----SESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEM 324

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
           K +GI    +  NS++  Y    +W++A    + ALE            G+    +V ++
Sbjct: 325 KTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALES-----------GL---ANVFTF 370

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
            ++++ LCK+  +++A  L+ ++ ++GI P+VV Y+++I G+C    I+ A K++  +  
Sbjct: 371 NTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLD 430

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI-------------LE 389
            G  P+  ++  L++ Y K   +E A S++  M    + P ++ +              E
Sbjct: 431 NGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFE 490

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
             +LF    +  F      +N ++DG  K   +  A  +++++   G  P+ VTYT +I 
Sbjct: 491 GRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLID 550

Query: 450 GLCIEGGIEKAYDLLPDMEEK 470
           G C    I+ A  LL DM+ K
Sbjct: 551 GFCKGNNIDLALKLLNDMKRK 571



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 153/330 (46%), Gaps = 53/330 (16%)

Query: 193 IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252
           IP    + S+I    K+G V +   L  DM   G   +  V  SL++ YC        +G
Sbjct: 225 IPPEGTFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYC-------MQG 277

Query: 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
           N  +AL L    VN   E G++  P+ ++Y  +I+  CK+  ++KA E + +MK++GI  
Sbjct: 278 NLRSALVL----VNEISESGLV--PNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRS 331

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
            V   +S+++GY       +A  +F      G + +  ++NTL++   K  K+ EA +L+
Sbjct: 332 SVYSLNSILEGYLKCQSWQNAFTMFNDALESG-LANVFTFNTLLSWLCKEGKMNEACNLW 390

Query: 373 GEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
            E+I+ G+ P+                      +  +N ++ G C+   + +A +++K++
Sbjct: 391 DEVIAKGISPN----------------------VVSYNNIILGHCRKDNINAACKVYKEM 428

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPD 492
              G  PN VT+T+++ G   +G IE A+                  + H+M    + P 
Sbjct: 429 LDNGFTPNAVTFTILMDGYFKKGDIENAF-----------------SIFHRMKDANILPT 471

Query: 493 EITVSILEELLNKDENCHECMNLLPSFLSR 522
           + T+ I+ + L K     E  +L   F+S+
Sbjct: 472 DTTLGIIIKGLCKAGRSFEGRDLFNKFVSQ 501



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 98/220 (44%), Gaps = 26/220 (11%)

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL---VDKAKELFLDMKSRGI 310
           T  A  L ++F +G   +   C  D L  C+ + +   D+    + +A++ FL  K+RG+
Sbjct: 131 THRAQYLFDQFASGK-SVRFSCLMDRLVECTKLYNFPLDIQEGNILEAEQHFLQAKARGV 189

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
             D   YS  +   CL      A  L   + + G IP   ++ ++I +  K   V EAL 
Sbjct: 190 ELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACVKEGNVAEALR 249

Query: 371 LYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
           L  +M++ G                        ++L V   L+ G C    LRSA  L  
Sbjct: 250 LKDDMVNCGK----------------------SMNLAVATSLMKGYCMQGNLRSALVLVN 287

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           ++   G  PN VTY+V+I G C  G IEKA++   +M+ K
Sbjct: 288 EISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTK 327


>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Vitis vinifera]
          Length = 879

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/422 (25%), Positives = 192/422 (45%), Gaps = 38/422 (9%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPS---FNSLLGALAGKKYYVNFICLSERLNTIGL 118
           K G++E+ + L      I ++   F+P+   + +++     K  +     L   +N+ GL
Sbjct: 251 KKGDMEMANGL-----FIELKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGL 305

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
             +    N +++   K   +  A   +  ++     PD+VT   LI G C  GK +EA  
Sbjct: 306 TVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQ 365

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           L  + +       ++PN   Y  +I   CK G  ++     ++M  RG  PD   Y +L+
Sbjct: 366 LLEQALG----KGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALV 421

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
                A       G    AL + E+ +    E GV   PD   Y  +++ LCK   +  A
Sbjct: 422 HGLVVA-------GEVDVALTIREKML----ERGVF--PDAGIYNILMSGLCKKFKLPAA 468

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
           K L  +M  + ++PD  VY++L+DG+   G +D+ARKLF     +G  P    YN +I  
Sbjct: 469 KLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKG 528

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDN---SCILE----------AAELFRTLHNTKFELD 405
           Y K   +++A++    M    + PD    S +++          A ++FR +   K + +
Sbjct: 529 YCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPN 588

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
           +  +  L++G C+   L  + ++F+++   G  PNVVTY+++I   C E  +  A     
Sbjct: 589 VVTYTSLINGFCRKGDLHRSLKIFREMQACGLVPNVVTYSILIGSFCKEAKLIDAASFFE 648

Query: 466 DM 467
           +M
Sbjct: 649 EM 650



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 177/397 (44%), Gaps = 56/397 (14%)

Query: 76  NYMIHMQPTPFMP---SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCF 132
           N++I M      P   ++ +L+  L         + + E++   G+ PD    NILM+  
Sbjct: 400 NWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGL 459

Query: 133 CKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNV 192
           CK   +  A + L  +L +   PD      L+ G    G   EA  LF           +
Sbjct: 460 CKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFE----LTIEKGM 515

Query: 193 IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252
            P ++ Y ++I G CK G +         MK R + PD F Y+++I  Y   V   D  G
Sbjct: 516 NPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGY---VKQHDLDG 572

Query: 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
               A ++  E V       + C P+V++Y S+IN  C+   + ++ ++F +M++ G++P
Sbjct: 573 ----AQKMFREMVK------MKCKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLVP 622

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK------IEKVE 366
           +VV YS LI  +C   ++ DA   F  +    C+P+  ++N L+N +SK       EK  
Sbjct: 623 NVVTYSILIGSFCKEAKLIDAASFFEEMLMNKCVPNDVTFNYLVNGFSKNGTRAISEKGN 682

Query: 367 E--------ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
           E         L+ +G MIS G  P ++                       +N ++  LC+
Sbjct: 683 EFQENKQSMFLNFFGRMISDGWAPRSA----------------------AYNSILICLCQ 720

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
               R+A +L  K+   G  P+ V++  ++ G+C+EG
Sbjct: 721 YGMFRTALQLSNKMTSKGCIPDSVSFVALLHGVCLEG 757



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 111/437 (25%), Positives = 189/437 (43%), Gaps = 82/437 (18%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI--LRKVFSP------------DVV 158
           L T    PD ++ N L+N   K          LGRI   RK++              D  
Sbjct: 156 LKTYTYFPDVIACNSLLNMLVK----------LGRIEIARKLYDEMLEIDGAGDRCVDNY 205

Query: 159 TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVL 218
           +   +++GLC +GK  E   L        C    IPN+I Y ++IDG CK G +     L
Sbjct: 206 STCIMVKGLCKEGKLEEGRKLIEDRWGQGC----IPNIIFYNTLIDGYCKKGDMEMANGL 261

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWE---------DAKGNTSAALELHEEFVNGNG 269
           F+++K +G  P    Y ++I  +C   +++         +++G T   ++++   ++   
Sbjct: 262 FIELKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLT-VNVQVYNTIIDARY 320

Query: 270 ELGVI--------------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV 315
           + G I              C PD+++Y ++I+  C+D  V +A +L      +G++P+  
Sbjct: 321 KHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKF 380

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
            Y+ LI  YC  G  D A    + +   G  PD  +Y  L++      +V+ AL++  +M
Sbjct: 381 SYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKM 440

Query: 376 ISMGVRPDNSCI------------LEAAELFRT-LHNTKFELDLTVFNCLVDGLCKSWRL 422
           +  GV PD                L AA+L    + +     D  V+  LVDG  ++  L
Sbjct: 441 LERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNL 500

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLH 482
             A +LF+     G  P +V Y  MI G C        + ++ D          A+  ++
Sbjct: 501 DEARKLFELTIEKGMNPGIVGYNAMIKGYC-------KFGMMKD----------AMACIN 543

Query: 483 KMAKRYVKPDEITVSIL 499
           +M KR++ PDE T S +
Sbjct: 544 RMKKRHLAPDEFTYSTV 560



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 150/332 (45%), Gaps = 45/332 (13%)

Query: 202 IIDGLCKDGFVNK-VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL 260
           +I      G V K + + +  +K    +PD    NSL+ +           G    A +L
Sbjct: 135 VIQAYSDSGLVEKALELYYFVLKTYTYFPDVIACNSLLNMLV-------KLGRIEIARKL 187

Query: 261 HEEF--VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS 318
           ++E   ++G G+  V    D  S C ++  LCK+  +++ ++L  D   +G IP+++ Y+
Sbjct: 188 YDEMLEIDGAGDRCV----DNYSTCIMVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYN 243

Query: 319 SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
           +LIDGYC  G ++ A  LF+ ++ +G +P   +Y  +IN + K    +    L  EM S 
Sbjct: 244 TLIDGYCKKGDMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSR 303

Query: 379 GV-------------RPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
           G+             R  +  I++A E    +     + D+  +N L+ G C+  ++  A
Sbjct: 304 GLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEA 363

Query: 426 WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK--------------- 470
            +L ++    G  PN  +YT +I   C +GG ++A + L +M E+               
Sbjct: 364 DQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHG 423

Query: 471 ---IRECLKAIELLHKMAKRYVKPDEITVSIL 499
                E   A+ +  KM +R V PD    +IL
Sbjct: 424 LVVAGEVDVALTIREKMLERGVFPDAGIYNIL 455



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 144/335 (42%), Gaps = 45/335 (13%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ P  V  N ++  +CK   + DA   + R+ ++  +PD  T   +I G   Q     A
Sbjct: 514 GMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGA 573

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             +F + V   C+PNV+     Y S+I+G C+ G +++   +F +M+  G+ P+   Y+ 
Sbjct: 574 QKMFREMVKMKCKPNVVT----YTSLINGFCRKGDLHRSLKIFREMQACGLVPNVVTYSI 629

Query: 237 LIRVYCCAVNWEDA---------------------------KGNTSAALELHEEFVNGNG 269
           LI  +C      DA                           K  T A  E   EF     
Sbjct: 630 LIGSFCKEAKLIDAASFFEEMLMNKCVPNDVTFNYLVNGFSKNGTRAISEKGNEFQENKQ 689

Query: 270 EL-----GVICH----PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
            +     G +      P   +Y SI+  LC+  +   A +L   M S+G IPD V + +L
Sbjct: 690 SMFLNFFGRMISDGWAPRSAAYNSILICLCQYGMFRTALQLSNKMTSKGCIPDSVSFVAL 749

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL---SLYGEMIS 377
           + G CL GR  + + +     +E  +    +Y+++++ Y      E ++   +++ E  S
Sbjct: 750 LHGVCLEGRSKEWKNIVSCNLNERELQIAVNYSSILDQYLPQGTSEASVILQTMFEECQS 809

Query: 378 MGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCL 412
                DN  +  + +L+  LH+TK  + L + N L
Sbjct: 810 HSKVGDNIQVSFSNQLY--LHDTKAGVTLLLRNGL 842



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 111/270 (41%), Gaps = 47/270 (17%)

Query: 285 IINSLCKDVLVDKAKELF-LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF---VSI 340
           +I +     LV+KA EL+   +K+    PDV+  +SL++    +GRI+ ARKL+   + I
Sbjct: 135 VIQAYSDSGLVEKALELYYFVLKTYTYFPDVIACNSLLNMLVKLGRIEIARKLYDEMLEI 194

Query: 341 ESEG--CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398
           +  G  C+ D  S   ++    K  K+EE   L  +    G  P+               
Sbjct: 195 DGAGDRCV-DNYSTCIMVKGLCKEGKLEEGRKLIEDRWGQGCIPN--------------- 238

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
                  +  +N L+DG CK   +  A  LF +L   G  P V TY  +I G C +G  +
Sbjct: 239 -------IIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFK 291

Query: 459 ------------------KAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILE 500
                             + Y+ + D   K    +KA+E +  M +   KPD +T + L 
Sbjct: 292 AIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLI 351

Query: 501 ELLNKDENCHECMNLLPSFLSRNQEESKLT 530
               +D    E   LL   L +    +K +
Sbjct: 352 SGSCRDGKVSEADQLLEQALGKGLMPNKFS 381



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 101/267 (37%), Gaps = 24/267 (8%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L+ A   F  M+ M+  P + ++ SL+     K      + +   +   GL+P+ V+ +
Sbjct: 569 DLDGAQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLVPNVVTYS 628

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG---------KFTE-A 176
           IL+  FCK   + DA      +L     P+ VT   L+ G    G         +F E  
Sbjct: 629 ILIGSFCKEAKLIDAASFFEEMLMNKCVPNDVTFNYLVNGFSKNGTRAISEKGNEFQENK 688

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             +F  F          P    Y SI+  LC+ G       L   M  +G  PD+  + +
Sbjct: 689 QSMFLNFFGRMISDGWAPRSAAYNSILICLCQYGMFRTALQLSNKMTSKGCIPDSVSFVA 748

Query: 237 LIRVYC-------------CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
           L+   C             C +N  + +   + +  L +    G  E  VI    +   C
Sbjct: 749 LLHGVCLEGRSKEWKNIVSCNLNERELQIAVNYSSILDQYLPQGTSEASVILQT-MFEEC 807

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGI 310
              + +  ++ V  + +L+L     G+
Sbjct: 808 QSHSKVGDNIQVSFSNQLYLHDTKAGV 834



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 66/160 (41%), Gaps = 18/160 (11%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALA----------GKKYYVN----FICLS 110
           E +L DA  FF  M+  +  P   +FN L+   +          G ++  N    F+   
Sbjct: 637 EAKLIDAASFFEEMLMNKCVPNDVTFNYLVNGFSKNGTRAISEKGNEFQENKQSMFLNFF 696

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
            R+ + G  P   + N ++ C C+      A     ++  K   PD V+   L+ G+C++
Sbjct: 697 GRMISDGWAPRSAAYNSILICLCQYGMFRTALQLSNKMTSKGCIPDSVSFVALLHGVCLE 756

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDG 210
           G+  E    +   V+ +     +   + Y+SI+D     G
Sbjct: 757 GRSKE----WKNIVSCNLNERELQIAVNYSSILDQYLPQG 792


>gi|297836398|ref|XP_002886081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331921|gb|EFH62340.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 743

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 121/489 (24%), Positives = 217/489 (44%), Gaps = 53/489 (10%)

Query: 65  EVELNDALCFFNYMI-HMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV 123
           E +L DAL     M+      P   ++N++L A++ K    +   L   +   GL+P+ V
Sbjct: 217 EGKLEDALGMLERMVSEFNVNPDNVTYNTILKAMSKKGRLSDVKDLLLDMKRNGLVPNRV 276

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           + N L+  +CK+  + +AF  +  + +    PD+ T   LI G+C  G   E   L    
Sbjct: 277 TYNNLVYGYCKLGSLKEAFQIVELMKQTNILPDLCTYNILINGVCNAGSIREGLELMDVM 336

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
            +   +    P+V+ Y ++IDG  + G   + + L   M+  G+ P+   +N  ++  C 
Sbjct: 337 KSLKLQ----PDVVTYNTLIDGCFELGLSLEAKKLMEQMENDGVKPNQVTHNISLKWLCK 392

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
               E+        +E+H               PD+++Y ++I +  K   +  A E+  
Sbjct: 393 EEKREEVTRKVKELVEMHG------------FSPDIVTYHTLIKAYLKVGDLSGALEMMR 440

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
           +M  +GI  + +  ++++D  C   ++D+A  L  S    G I D  +Y TLI  Y + E
Sbjct: 441 EMGQKGIKMNTITLNTILDALCKERKVDEAHNLLDSAHKRGYIVDEVTYGTLIMGYFREE 500

Query: 364 KVEEALSLYGEMISMGVRPD----NSCILE---------AAELFRTLHNTKFELDLTVFN 410
           KVE+A  ++ EM  + + P     NS I           A E F  L  +    D   FN
Sbjct: 501 KVEKAFEMWDEMKRIKITPTVTTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDCTFN 560

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM--- 467
            ++ G CK  R+  A+E + +  ++  +P+  T  +++ GLC EG  EKA +    +   
Sbjct: 561 SIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLITE 620

Query: 468 -----------------EEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCH 510
                            ++K++E   A +LL +M ++ ++PD  T + +   L +D    
Sbjct: 621 REVDTVTYNTMISAFCKDKKLKE---AYDLLSEMEEKRLEPDRFTYNSIITSLMEDGKLS 677

Query: 511 ECMNLLPSF 519
           E   LL  F
Sbjct: 678 EADELLKKF 686



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 110/409 (26%), Positives = 193/409 (47%), Gaps = 37/409 (9%)

Query: 79  IHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKM- 135
           +H+ P P    F+  L A   AGK +    + + +++  + L P+ ++ N L+    +  
Sbjct: 123 LHLSPPPSKALFDIALSAYLHAGKPHVA--LQVFQKMIRLKLKPNLLTCNTLLIGLVRYP 180

Query: 136 --IGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
               ++ A      +++   S DV T   L+ G C++GK  +A G+  + V+     NV 
Sbjct: 181 SSFSIASAREVFDDMVKIGVSLDVKTFNVLVNGYCLEGKLEDALGMLERMVS---EFNVN 237

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P+ + Y +I+  + K G ++ V+ L LDMK  G+ P+   YN+L+  YC         G+
Sbjct: 238 PDNVTYNTILKAMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYC-------KLGS 290

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
              A ++ E     N        PD+ +Y  +IN +C    + +  EL   MKS  + PD
Sbjct: 291 LKEAFQIVELMKQTN------ILPDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPD 344

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           VV Y++LIDG   +G   +A+KL   +E++G  P+  ++N  +    K EK EE      
Sbjct: 345 VVTYNTLIDGCFELGLSLEAKKLMEQMENDGVKPNQVTHNISLKWLCKEEKREEVTRKVK 404

Query: 374 EMISM-GVRPD----NSCILE---------AAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
           E++ M G  PD    ++ I           A E+ R +     +++    N ++D LCK 
Sbjct: 405 ELVEMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKE 464

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
            ++  A  L     + G   + VTY  +I G   E  +EKA+++  +M+
Sbjct: 465 RKVDEAHNLLDSAHKRGYIVDEVTYGTLIMGYFREEKVEKAFEMWDEMK 513



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 171/369 (46%), Gaps = 50/369 (13%)

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK--DGF-VNKVRVLFLDMKGRGI 227
           GK   A  +F K +    +PN++    C   +I GL +    F +   R +F DM   G+
Sbjct: 145 GKPHVALQVFQKMIRLKLKPNLL---TCNTLLI-GLVRYPSSFSIASAREVFDDMVKIGV 200

Query: 228 YPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIIN 287
             D   +N L+  YC     EDA G       + E  V+   E  V  +PD ++Y +I+ 
Sbjct: 201 SLDVKTFNVLVNGYCLEGKLEDALG-------MLERMVS---EFNV--NPDNVTYNTILK 248

Query: 288 SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
           ++ K   +   K+L LDMK  G++P+ V Y++L+ GYC +G + +A ++   ++    +P
Sbjct: 249 AMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNILP 308

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCI---------LEAAELF 394
           D  +YN LIN       + E L L   M S+ ++PD    N+ I         LEA +L 
Sbjct: 309 DLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLIDGCFELGLSLEAKKLM 368

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR-YGPEPNVVTYTVMICGLCI 453
             + N   + +    N  +  LCK  +        K+L   +G  P++VTY  +I     
Sbjct: 369 EQMENDGVKPNQVTHNISLKWLCKEEKREEVTRKVKELVEMHGFSPDIVTYHTLI----- 423

Query: 454 EGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECM 513
                KAY  + D+         A+E++ +M ++ +K + IT++ + + L K+    E  
Sbjct: 424 -----KAYLKVGDLS-------GALEMMREMGQKGIKMNTITLNTILDALCKERKVDEAH 471

Query: 514 NLLPSFLSR 522
           NLL S   R
Sbjct: 472 NLLDSAHKR 480


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 122/460 (26%), Positives = 194/460 (42%), Gaps = 70/460 (15%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L+ AL  FN M      P   ++++L+  L           L   +   G+LP   +  
Sbjct: 265 DLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCT 324

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
             +   C M    DA+     +  K   P+V T   LI GLC+ G    A GLF +    
Sbjct: 325 GPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRD 384

Query: 187 DCRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKV 215
              PN +                               PN++ Y  +I G C  G   K 
Sbjct: 385 GVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKA 444

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
            ++  +M  RG   +   YN++I+ YC         GNT++AL + +   +G       C
Sbjct: 445 MLVMNNMLQRGHSANLVTYNTIIKGYC-------DSGNTTSALRILDLMRDGG------C 491

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
            PD  SY  +I   CK   ++ A  LF +M   G+ P+ V Y++LIDGYC   ++D A  
Sbjct: 492 KPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATS 551

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395
           L   ++  GC P+  +YN LI+  +K      A  L   MI  G+ P+            
Sbjct: 552 LLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPN------------ 599

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
                     +  +  ++DGLCK+     A E+F K+   G  PN++TY+ +I  L  EG
Sbjct: 600 ----------VVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEG 649

Query: 456 GIEKAYDLLPDMEEKIRECLKAIELLH-KMAKRYVKPDEI 494
            +E+A +L  ++E   R  L   E+ + KM + Y+   ++
Sbjct: 650 KVEEAENLFAELE---RHGLIPDEITYVKMIEAYIMSGKV 686



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 127/480 (26%), Positives = 197/480 (41%), Gaps = 99/480 (20%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
            R+ + G+ P+ +  N ++N  CK   V+DA   + ++     SPD  T   +I G C +
Sbjct: 204 HRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRK 263

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV--------------- 215
                A  +F +     C PN +     Y+++I+GLC  G VN+                
Sbjct: 264 HDLDSALQVFNQMAKEGCEPNTVT----YSTLINGLCDSGRVNEAFDLIREMILHGILPT 319

Query: 216 --------------------RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG--- 252
                                 LF+DMK +G  P+ + Y +LI   C +   + A G   
Sbjct: 320 AHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFH 379

Query: 253 ---------NT---SAALELHEE---------FVNGNGELGVICHPDVLSYCSIINSLCK 291
                    NT   +A + +  E          +N  G  G  C P++++Y  +I   C 
Sbjct: 380 RMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNG--CSPNIVTYNEMIKGYC- 436

Query: 292 DVLVDKAKELFL--DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
            +L D  K + +  +M  RG   ++V Y+++I GYC  G    A ++   +   GC PD 
Sbjct: 437 -ILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDE 495

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSCILE----AAELFRT 396
            SY  LI  + KI K+E A  L+ EM+  G+ P         D  C  E    A  L   
Sbjct: 496 WSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEH 555

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           +  +    ++  +N L+ GL K      A EL K +   G  PNVVTYT MI GLC  G 
Sbjct: 556 MKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGS 615

Query: 457 IEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
              A                 +E+ +KM ++   P+ +T S L   L ++    E  NL 
Sbjct: 616 TSLA-----------------LEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLF 658



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 98/385 (25%), Positives = 176/385 (45%), Gaps = 41/385 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALA-GKKYYVNFICLSERLNTIGLLPDFVSLN 126
           L  A+  F+ M      P   ++N+L+  L   ++    F+ L+  +   G  P+ V+ N
Sbjct: 371 LKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLN-LMGRNGCSPNIVTYN 429

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            ++  +C +     A + +  +L++  S ++VT   +I+G C  G  T A  +       
Sbjct: 430 EMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDG 489

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C+P+       Y  +I G CK   +     LF +M   G+ P+   Y +LI  YC    
Sbjct: 490 GCKPDEWS----YTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYC---- 541

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            +D K +T+ +L  H +           C P+V +Y  +I+ L K      A+EL   M 
Sbjct: 542 -KDEKLDTATSLLEHMKRSG--------CRPNVQTYNVLIHGLTKQNNFSGAEELCKVMI 592

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
             GI P+VV Y+++IDG C  G    A ++F  +  +GC+P+  +Y++LI +  +  KVE
Sbjct: 593 EEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVE 652

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           EA +L+ E+   G+ PD    ++                      +++    S ++  A+
Sbjct: 653 EAENLFAELERHGLIPDEITYVK----------------------MIEAYIMSGKVEHAF 690

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGL 451
               ++ + G +P + TY V+I GL
Sbjct: 691 NFLGRMIKAGCQPTLWTYGVLIKGL 715



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 122/244 (50%), Gaps = 27/244 (11%)

Query: 219 FLDMKGR-GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277
           FLDM  + G+    F Y++L+ ++   +      G T+A ++ +   ++     GV   P
Sbjct: 167 FLDMLSQSGLRMGLFAYSALL-IHLSRL------GMTAAVMDRYHRMLSE----GV--QP 213

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           ++L Y ++IN+LCKD  V  A+ +   +    + PD   Y+S+I G+C    +D A ++F
Sbjct: 214 NLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVF 273

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP-------------DN 384
             +  EGC P+T +Y+TLIN      +V EA  L  EMI  G+ P             D 
Sbjct: 274 NQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDM 333

Query: 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
            C  +A  LF  + N   E ++  +  L+ GLC S  L+ A  LF ++ R G  PN VTY
Sbjct: 334 GCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTY 393

Query: 445 TVMI 448
             +I
Sbjct: 394 NALI 397



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 138/324 (42%), Gaps = 56/324 (17%)

Query: 175 EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVY 234
           EA      F+    +  +   +  Y++++  L + G    V   +  M   G+ P+  +Y
Sbjct: 159 EAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIY 218

Query: 235 NSLIRVYCCAVNWEDA----------------------------KGNTSAALELHEEFVN 266
           N++I   C   N  DA                            K +  +AL++  +   
Sbjct: 219 NAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAK 278

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
                   C P+ ++Y ++IN LC    V++A +L  +M   GI+P     +  I   C 
Sbjct: 279 EG------CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCD 332

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC 386
           MG  +DA +LFV ++++GC P+  +Y  LI+       ++ A+ L+  M   GV P+   
Sbjct: 333 MGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNT-- 390

Query: 387 ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTV 446
                                 +N L++ L ++ R++ A+ +   + R G  PN+VTY  
Sbjct: 391 --------------------VTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNE 430

Query: 447 MICGLCIEGGIEKAYDLLPDMEEK 470
           MI G CI G  +KA  ++ +M ++
Sbjct: 431 MIKGYCILGDPKKAMLVMNNMLQR 454



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 176/422 (41%), Gaps = 51/422 (12%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++  A   FN M+     P   ++ +L+      +       L E +   G  P+  + N
Sbjct: 510 KMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYN 569

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +L++   K    S A      ++ +   P+VVT   +I GLC  G  + A  +F K +  
Sbjct: 570 VLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQ 629

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C    +PN++ Y+S+I  L ++G V +   LF +++  G+ PD   Y  +I  Y  +  
Sbjct: 630 GC----LPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGK 685

Query: 247 WEDA--------KGNTSAAL--------ELHEEFVNGNGELGVICHPDVLSYCSI-INSL 289
            E A        K      L         L  E++  +  L  +  PDV+  CS    + 
Sbjct: 686 VEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAAL--PDVVPNCSFGYQTT 743

Query: 290 CKD-VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
            +D V V  AK   LD    G+   V V ++L+      GR  +A +L  S+ S+G  PD
Sbjct: 744 DQDAVSVMSAKLAELD---PGL--SVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPD 798

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTV 408
             +YN+L+ S  ++  V+ A+ ++  M + G                       E+ L  
Sbjct: 799 QEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGC----------------------EVHLNG 836

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +  L+  LC+  R + A   F+ +      P+ V   V+I GL  +G  +   + L  ME
Sbjct: 837 YKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIME 896

Query: 469 EK 470
            +
Sbjct: 897 TR 898


>gi|224143015|ref|XP_002324819.1| predicted protein [Populus trichocarpa]
 gi|222866253|gb|EEF03384.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 119/498 (23%), Positives = 217/498 (43%), Gaps = 54/498 (10%)

Query: 42  NSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKK 101
           +S  TV  +TKL+ +L E  K  E E       F  +I     P + S+ +LL AL  +K
Sbjct: 8   DSCRTVRSRTKLMNFLVEKGKPQEAE-----SIFYSLIEGGHKPSLISYTTLLAALTMQK 62

Query: 102 YYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLG 161
            + +   +  ++   G+ PD +  N ++N F +   +  A     ++      P   T  
Sbjct: 63  RFDSIYSIISQVEENGMNPDSIFFNAVINAFSESGNMESAMETFWKMQENGMKPTTSTYN 122

Query: 162 CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD 221
            LI+G  + GK  E+  L           NV PN+  Y  ++   C    + +   +   
Sbjct: 123 TLIKGYGIAGKPEESVKLLE---LMSQEGNVKPNLRTYNVLVRAWCNKKRITEAWNVVYK 179

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
           M   GI PD   YN++   Y      + A+G     LE+       NG       P+  +
Sbjct: 180 MIASGIQPDVVTYNTIATAYAQKGALDQAEG---VILEMQ-----NNG-----VQPNERT 226

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
              I++  CK+  + +A      MK  GI P++V+++SLI G+  +   D   ++   +E
Sbjct: 227 CGIIMSGYCKEGRIREALRFAYRMKELGIHPNLVIFNSLIKGFVAIMDRDGVDEVLNLME 286

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC--IL----------- 388
             G  PD  +++T++N++S    +E+   ++ +M+  G+ PD     IL           
Sbjct: 287 EFGVKPDVITFSTIMNAWSTAGFMEKCREIFDDMVKAGIEPDAHAYSILAKGYVRAQEPE 346

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
           +A EL  T+  + F+ ++ +F  ++ G C + ++  A  +F K+ + G  PN+ T+  +I
Sbjct: 347 KAEELLTTMIKSGFQPNVVIFTTVISGWCSAGKMDYAVRVFDKMCQRGISPNLKTFETLI 406

Query: 449 CGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDEN 508
            G                   + R+  KA E+L  M +  V+P++ T+ ++ E       
Sbjct: 407 WGFA-----------------EARQPWKAEEILQIMTEFEVQPEKSTMLLVAEAWRATGM 449

Query: 509 CHECMNLLPSFLSRNQEE 526
             E   LL    +RN++E
Sbjct: 450 TKEANRLLG---TRNRKE 464


>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 125/471 (26%), Positives = 209/471 (44%), Gaps = 52/471 (11%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + S+NSLL AL     +           T+GL P+  + NIL+   C+      A   
Sbjct: 112 PGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKEL 171

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           L  +  + FSPDV + G LI  L   G  ++A  LF +         V P+V CY  +ID
Sbjct: 172 LNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMP----ERGVTPDVACYNILID 227

Query: 205 GLCKDG-FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL-HE 262
           G  K G  +N   +    +KG  +YP+   YN +I   C         G    + E+ H 
Sbjct: 228 GFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKC-------GKFDESFEIWHR 280

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
              N  G+       D+ +Y ++I+ LC    +D A  ++ +M   G+ PDVVVY+++++
Sbjct: 281 MKKNERGQ-------DLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLN 333

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY---------G 373
           GY   GRI++  +L+  +E EGC     SYN LI    +  KV+EA+S++          
Sbjct: 334 GYLRAGRIEECLELWKVMEKEGC-RTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCA 392

Query: 374 EMISMGVRPDNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
           + ++ GV     C    + +A  +     N + +LD   ++ +++GLC+  RL     + 
Sbjct: 393 DSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVL 452

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKA------------------YDLLPDMEEKI 471
            ++ ++G +PN      +I G      +E A                  Y+ L +   K 
Sbjct: 453 DQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKA 512

Query: 472 RECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
               +A  L+ +M  +  KP+ IT S+L   L + +     +NL    L +
Sbjct: 513 ERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEK 563



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 117/445 (26%), Positives = 207/445 (46%), Gaps = 64/445 (14%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERL-NTIGL 118
           NS +    ++DAL  F+ M     TP +  +N L+     K   +N   + ERL     +
Sbjct: 192 NSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSV 251

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
            P+  S N+++N  CK     ++F    R+ +     D+ T   LI GLC  G    A+ 
Sbjct: 252 YPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATR 311

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG-------------R 225
           ++ +         V P+V+ Y ++++G  + G + +   L+  M+              R
Sbjct: 312 VYKEMA----ENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIR 367

Query: 226 GIYPDAFVYNSLIRVY-------CCA--------VNWEDAKGNTSAALELHEEFVNGNGE 270
           G++ +A V +  I ++       CCA        V+     G  + AL + EE  NG G+
Sbjct: 368 GLFENAKV-DEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGD 426

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
           L      D  +Y S+IN LC++  +D+   +   M   G  P+  V +++I+G+    ++
Sbjct: 427 L------DTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKL 480

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEA 390
           +DA + F ++ S+GC P   +YNTLIN  SK E+  EA +L  EM+  G +P        
Sbjct: 481 EDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKP-------- 532

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
                         ++  ++ L++GLC+  +L  A  L+ +    G +P+V  + ++I G
Sbjct: 533 --------------NMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHG 578

Query: 451 LCIEGGIEKAYDLLPDMEEKIRECL 475
           LC  G +E A  L  +M++  R+C+
Sbjct: 579 LCSSGKVEDALQLYSEMKQ--RKCV 601



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 158/369 (42%), Gaps = 39/369 (10%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           S+N L+  L         I + E L       D ++  +L++  CK   ++ A   L   
Sbjct: 361 SYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEA 420

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
                  D      +I GLC +G+  E +G+  +     C+PN  P+V C A +I+G  +
Sbjct: 421 ENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPN--PHV-CNA-VINGFVR 476

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
              +      F +M  +G +P    YN+LI     A  +       S A  L +E ++  
Sbjct: 477 ASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERF-------SEAYALVKEMLHKG 529

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
            +      P++++Y  ++N LC+   +D A  L+     +G  PDV +++ +I G C  G
Sbjct: 530 WK------PNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSG 583

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL 388
           +++DA +L+  ++   C+P+  ++NTL+  + K+   E A  ++  ++  G +P      
Sbjct: 584 KVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGPQP------ 637

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
                           D+  +N  + GLC   R+  A          G  P  +T+ +++
Sbjct: 638 ----------------DIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILV 681

Query: 449 CGLCIEGGI 457
             +   G +
Sbjct: 682 RAVLDNGAL 690



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 129/268 (48%), Gaps = 35/268 (13%)

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
           C P + SY S++N+L +    D+A+  FL  ++ G+ P++  Y+ LI   C   + D A+
Sbjct: 110 CQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAK 169

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC-------- 386
           +L   +  +G  PD  SY TLINS +K   + +AL L+ EM   GV PD +C        
Sbjct: 170 ELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGF 229

Query: 387 -----ILEAAELF-RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
                IL A+E++ R L       ++  +N +++GLCK  +   ++E++ ++ +     +
Sbjct: 230 FKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQD 289

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDMEE---------------------KIRECLKAIE 479
           + TY+ +I GLC  G ++ A  +  +M E                     +I ECL+  +
Sbjct: 290 LYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWK 349

Query: 480 LLHKMAKRYVKPDEITVSILEELLNKDE 507
           ++ K   R V    I +  L E    DE
Sbjct: 350 VMEKEGCRTVVSYNILIRGLFENAKVDE 377



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 101/205 (49%), Gaps = 17/205 (8%)

Query: 284 SIINSLCKDVLVDKAKELFLDMKS-RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
           ++I +  K+ + D+A ++F  M    G  P +  Y+SL++      + D+A   F+  E+
Sbjct: 83  TVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFET 142

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILE 389
            G  P+  +YN LI    + ++ ++A  L   M   G  PD             N  + +
Sbjct: 143 MGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSD 202

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE--PNVVTYTVM 447
           A +LF  +       D+  +N L+DG  K   + +A E++++L + GP   PN+ +Y VM
Sbjct: 203 ALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLK-GPSVYPNIPSYNVM 261

Query: 448 ICGLCIEGGIEKAYDLLPDMEEKIR 472
           I GLC  G  ++++++   M++  R
Sbjct: 262 INGLCKCGKFDESFEIWHRMKKNER 286



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 90/193 (46%), Gaps = 4/193 (2%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L DAL FF  M+     P + ++N+L+  L+  + +     L + +   G  P+ ++ +
Sbjct: 479 KLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYS 538

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +LMN  C+   +  A     + L K F PDV     +I GLC  GK  +A  L+++    
Sbjct: 539 LLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQR 598

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C    +PN++ + ++++G  K     +   ++  +   G  PD   YN  ++  C    
Sbjct: 599 KC----VPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGPQPDIISYNITLKGLCSCHR 654

Query: 247 WEDAKGNTSAALE 259
             DA G  + A++
Sbjct: 655 ISDAVGFLNDAVD 667


>gi|413924892|gb|AFW64824.1| hypothetical protein ZEAMMB73_716034 [Zea mays]
          Length = 721

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/357 (29%), Positives = 163/357 (45%), Gaps = 39/357 (10%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +  +GLLPD ++ N L+N +CK   + +A   LG + R   +P V+T   LI G C  G 
Sbjct: 369 MRAMGLLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGD 428

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
             EA  L  + V   C     P+V  Y  +++G  K   +   R  F +M  +G+ PD F
Sbjct: 429 LAEARRLKEEMVEQGC----FPDVCTYTILMNGSRKVRNLAMAREFFDEMLSKGLQPDCF 484

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            YN+ I    CA   E    +T  A +L E  +          +PD ++Y  II+ LCK 
Sbjct: 485 AYNTRI----CA---ELTLSSTPMAFQLREVMMLKG------IYPDTVTYNVIIDGLCKT 531

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             +  AK L   M S G+ PD + Y+ LI  +C  G + +ARKL   + S+G  P   +Y
Sbjct: 532 GNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARKLLNGMVSDGLQPSVVTY 591

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCL 412
             L+++  +   +  A   + +M+ +G+ P+                         +N L
Sbjct: 592 TILVHTCCRRGNLYSAYGWFRKMLDVGIEPNE----------------------ITYNVL 629

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           +  LC + R   A+  F ++   G  PN  TYT++I G C EG    A  L  +M +
Sbjct: 630 IHALCMTGRTPLAFRHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQ 686



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 118/448 (26%), Positives = 192/448 (42%), Gaps = 80/448 (17%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ PD    N ++          D     G +L+    P +VT   L+     +G+  EA
Sbjct: 197 GVAPDVRDCNRVLRVLRDAARWDDVRAVYGEMLQLRVEPTIVTYNTLLDSFLKEGRKDEA 256

Query: 177 SGL-----------------FTKFVAFDCRPNVIPNVI---------------CYASIID 204
           S L                 F   ++F  R   + N +                Y  +I 
Sbjct: 257 SMLLKEMETQGGGFSLNDVTFNVVISFLAREGHLENAVKLVDSMRLSKKASSFTYNPLIT 316

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
            L + GFV K   L ++M+  GI P    YN++I      +  E A+       E+    
Sbjct: 317 ALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIH---GLLKCEQAEAAQVKFAEMRA-- 371

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
                 +G++  PDV++Y S++N  CK   + +A  L  D++  G+ P V+ Y++LIDGY
Sbjct: 372 ------MGLL--PDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGY 423

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD- 383
           C +G + +AR+L   +  +GC PD  +Y  L+N   K+  +  A   + EM+S G++PD 
Sbjct: 424 CRLGDLAEARRLKEEMVEQGCFPDVCTYTILMNGSRKVRNLAMAREFFDEMLSKGLQPDC 483

Query: 384 ---NSCILEAAELFRTLHNTKFEL-----------DLTVFNCLVDGLCKSWRLRSAWELF 429
              N+ I   AEL  +     F+L           D   +N ++DGLCK+  L+ A  L 
Sbjct: 484 FAYNTRI--CAELTLSSTPMAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKRLK 541

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK------------IRECLK- 476
            K+   G +P+ +TYT +I   C  G + +A  LL  M               +  C + 
Sbjct: 542 TKMVSDGLQPDCITYTCLIHAHCERGLLREARKLLNGMVSDGLQPSVVTYTILVHTCCRR 601

Query: 477 -----AIELLHKMAKRYVKPDEITVSIL 499
                A     KM    ++P+EIT ++L
Sbjct: 602 GNLYSAYGWFRKMLDVGIEPNEITYNVL 629



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 109/423 (25%), Positives = 177/423 (41%), Gaps = 61/423 (14%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N L+ AL  + +      L   +   G++P  V+ N +++   K      A V    +
Sbjct: 310 TYNPLITALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEM 369

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
                 PDV+T   L+   C  G   EA  L         R  + P V+ Y ++IDG C+
Sbjct: 370 RAMGLLPDVITYNSLLNRYCKAGNLKEALWLLGDLR----RAGLAPTVLTYNTLIDGYCR 425

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
            G + + R L  +M  +G +PD   Y  L+       N      N + A E  +E ++  
Sbjct: 426 LGDLAEARRLKEEMVEQGCFPDVCTYTILM-------NGSRKVRNLAMAREFFDEMLSKG 478

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                   PD  +Y + I +         A +L   M  +GI PD V Y+ +IDG C  G
Sbjct: 479 ------LQPDCFAYNTRICAELTLSSTPMAFQLREVMMLKGIYPDTVTYNVIIDGLCKTG 532

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL 388
            + DA++L   + S+G  PD  +Y  LI+++ +   + EA  L   M+S G++P      
Sbjct: 533 NLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARKLLNGMVSDGLQPS----- 587

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
                            +  +  LV   C+   L SA+  F+K+   G EPN +TY V+I
Sbjct: 588 -----------------VVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLI 630

Query: 449 CGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDEN 508
             LC+ G    A+                    H+M +R + P++ T ++L      D N
Sbjct: 631 HALCMTGRTPLAF-----------------RHFHEMLERGLAPNKYTYTLL-----IDGN 668

Query: 509 CHE 511
           C E
Sbjct: 669 CRE 671



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 104/245 (42%), Gaps = 17/245 (6%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL PD  + N  +     +     AF     ++ K   PD VT   +I GLC  G   +A
Sbjct: 478 GLQPDCFAYNTRICAELTLSSTPMAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDA 537

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L TK V+      + P+ I Y  +I   C+ G + + R L   M   G+ P    Y  
Sbjct: 538 KRLKTKMVS----DGLQPDCITYTCLIHAHCERGLLREARKLLNGMVSDGLQPSVVTYTI 593

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           L+   CC       +GN  +A     +       L V   P+ ++Y  +I++LC      
Sbjct: 594 LVHT-CCR------RGNLYSAYGWFRKM------LDVGIEPNEITYNVLIHALCMTGRTP 640

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A   F +M  RG+ P+   Y+ LIDG C  G   DA +L+  +   G  PD  ++N L 
Sbjct: 641 LAFRHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALF 700

Query: 357 NSYSK 361
             + +
Sbjct: 701 KGFDE 705


>gi|357118215|ref|XP_003560853.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Brachypodium distachyon]
          Length = 597

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 127/460 (27%), Positives = 198/460 (43%), Gaps = 64/460 (13%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142
           P P   +FN+LL ALA          L   +    + P+ V+  IL+   CK   V DA 
Sbjct: 133 PPPDTSAFNTLLDALAQAGDLPGMTQLFASMRDASVRPNVVTYGILVKGLCKAGRVGDAL 192

Query: 143 VALGRIL--RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP--NVIPNVIC 198
             L  +        PDVV L  ++ GLC  G+  +A     KFV    R      PN + 
Sbjct: 193 SVLDGMSGPESDVCPDVVMLNNIVDGLCKTGRLQQA----VKFVEERMRSVHGCAPNTVT 248

Query: 199 YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL 258
           Y  +    C+ G V     L   M+   + P+A   N+++   C    W    G   AAL
Sbjct: 249 YNCLAHAFCRAGNVGMACELVAKMEKERVTPNAVTLNTIVGGLC----W---VGRVGAAL 301

Query: 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS 318
           E   E      E       + ++Y +++ +      V  A ELF +M   G  PD ++Y 
Sbjct: 302 EFFREKRTVWPE----ARGNAVTYSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYF 357

Query: 319 SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
           ++I G    GR+DDA  +  S++  G   D  +YN LI  + + +++ EA  L GEM   
Sbjct: 358 TMISGLTQAGRLDDAWSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEA 417

Query: 379 GVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
           G++P                      D+  +N L+ GLCK+    +  EL  K+   G  
Sbjct: 418 GLQP----------------------DVYTYNTLLSGLCKAGDFLAVDELLGKMIDGGCR 455

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIEL 480
           P+VVT+  +I G C  G I++A  +   M+E                  K R+   AIEL
Sbjct: 456 PSVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLIDFLCKSRDTSLAIEL 515

Query: 481 LHKMAKRYVKPDEITV--SILEELLNKD--ENCHECMNLL 516
             +M +++V P  +T   ++L+ L +K+  E   E M+L+
Sbjct: 516 FDEMREKHV-PANVTTFNALLKGLRDKNMPEKAFELMDLM 554



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 76/157 (48%), Gaps = 17/157 (10%)

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------- 383
           D AR L  S+ +    PDTS++NTL+++ ++   +     L+  M    VRP+       
Sbjct: 119 DAARFLRDSLAAGAPPPDTSAFNTLLDALAQAGDLPGMTQLFASMRDASVRPNVVTYGIL 178

Query: 384 ------NSCILEAAELFRTLHNTKFEL--DLTVFNCLVDGLCKSWRLRSAWELFKKLPR- 434
                    + +A  +   +   + ++  D+ + N +VDGLCK+ RL+ A +  ++  R 
Sbjct: 179 VKGLCKAGRVGDALSVLDGMSGPESDVCPDVVMLNNIVDGLCKTGRLQQAVKFVEERMRS 238

Query: 435 -YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            +G  PN VTY  +    C  G +  A +L+  ME++
Sbjct: 239 VHGCAPNTVTYNCLAHAFCRAGNVGMACELVAKMEKE 275


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 118/429 (27%), Positives = 193/429 (44%), Gaps = 71/429 (16%)

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
            + NI++   C     + A      +LR++  P+ VT   +I G C +G+   A  +  +
Sbjct: 42  TTFNIMLRHLCSAGKPARAL----ELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMRE 97

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG-IYPDAFVYNSLIRVY 241
                 R  + PN   Y ++I G CK G V++   +F +M  +G + P+A +YN+LI  Y
Sbjct: 98  MRE---RGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGY 154

Query: 242 C------CAVNWEDAKGNTSAALEL-------HEEFVNGNG----EL-----GVICHPDV 279
           C       A+ + D       A+ +       H  F++G G    EL     G    PDV
Sbjct: 155 CDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDV 214

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
            +Y  +IN  CK+  V KA E+F +M  RG+   VV Y+SLI      G++ +  KLF  
Sbjct: 215 FTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDE 274

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN 399
               G  PD   YN LINS+S    ++ A  + GEM    + PD+               
Sbjct: 275 AVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDD--------------- 319

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
                    +N L+ GLC   R+  A +L  ++ + G +P++VTY  +I G  ++G ++ 
Sbjct: 320 -------VTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKD 372

Query: 460 AYDLLPDMEEK------------IRECLK------AIELLHKMAKRYVKPDEIT-VSILE 500
           A  +  +M  K            I+   K      A  ++ +M +  + PD+ T +S++E
Sbjct: 373 ALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIE 432

Query: 501 ELLNKDENC 509
            L  +DE  
Sbjct: 433 GLTTEDERA 441



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 104/343 (30%), Positives = 161/343 (46%), Gaps = 41/343 (11%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ V  N L+  +C    +  A +   R++ +  +  V T   L+  L M G+ TEA  L
Sbjct: 142 PEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYEL 201

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             +         + P+V  Y  +I+G CK+G V K   +F +M  RG+      Y SLI 
Sbjct: 202 VEEMGG----KGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLI- 256

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            Y  +      KG      +L +E V           PD++ Y ++INS      +D+A 
Sbjct: 257 -YALS-----KKGQVQETDKLFDEAVRRG------IRPDLVLYNALINSHSTSGNIDRAF 304

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           E+  +M+ + I PD V Y++L+ G CL+GR+D+ARKL   +   G  PD  +YNTLI+ Y
Sbjct: 305 EIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGY 364

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
           S    V++AL +  EM++ G  P                       L  +N L+ GLCK+
Sbjct: 365 SMKGDVKDALRIRNEMMNKGFNP----------------------TLLTYNALIQGLCKN 402

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
            +   A  + K++   G  P+  TY  +I GL  E   E+A D
Sbjct: 403 GQGDDAENMVKEMVENGITPDDSTYISLIEGLTTED--ERAID 443



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 157/333 (47%), Gaps = 22/333 (6%)

Query: 67  ELNDALCFFNYMI---HMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV 123
            +++A+  F+ M+    ++P   M  +N+L+G    +      +   +R+   G+     
Sbjct: 123 RVDEAVKVFDEMLTKGEVKPEAVM--YNALIGGYCDQGKLDTALLYRDRMVERGVAMTVA 180

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           + N+L++        ++A+  +  +  K  +PDV T   LI G C +G   +A  +F   
Sbjct: 181 TYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENM 240

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
                R  V   V+ Y S+I  L K G V +   LF +   RGI PD  +YN+LI     
Sbjct: 241 ----SRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALI----- 291

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
             N     GN   A E+  E             PD ++Y +++  LC    VD+A++L  
Sbjct: 292 --NSHSTSGNIDRAFEIMGEMEKKR------IAPDDVTYNTLMRGLCLLGRVDEARKLID 343

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
           +M  RGI PD+V Y++LI GY + G + DA ++   + ++G  P   +YN LI    K  
Sbjct: 344 EMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNG 403

Query: 364 KVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
           + ++A ++  EM+  G+ PD+S  +   E   T
Sbjct: 404 QGDDAENMVKEMVENGITPDDSTYISLIEGLTT 436



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 97/233 (41%), Gaps = 17/233 (7%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N    E  +  AL  F  M        + ++ SL+ AL+ K        L +     G+ 
Sbjct: 222 NGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIR 281

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V  N L+N       +  AF  +G + +K  +PD VT   L+RGLC+ G+  EA  L
Sbjct: 282 PDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKL 341

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             +      +  + P+++ Y ++I G    G V     +  +M  +G  P    YN+LI+
Sbjct: 342 IDEMT----KRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQ 397

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
             C     +DA+      +E      NG         PD  +Y S+I  L  +
Sbjct: 398 GLCKNGQGDDAENMVKEMVE------NG-------ITPDDSTYISLIEGLTTE 437



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 4/81 (4%)

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
           A  LF  +   +  L  T FN ++  LC + +   A EL +++PR    PN VTY  +I 
Sbjct: 25  AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIA 80

Query: 450 GLCIEGGIEKAYDLLPDMEEK 470
           G C  G ++ A D++ +M E+
Sbjct: 81  GFCSRGRVQAALDIMREMRER 101


>gi|302759663|ref|XP_002963254.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
 gi|300168522|gb|EFJ35125.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
          Length = 495

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 164/349 (46%), Gaps = 38/349 (10%)

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
           LP+  +  I++   C       A   L  +  K+ +P    +  L+  LC  GK   A  
Sbjct: 69  LPNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYE 128

Query: 179 LFTKFVAFDCRPNVIP-NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
           L+ K ++ +C  + I  N++ Y     GLCK   +++   +F +M+   + P    YN L
Sbjct: 129 LY-KRLSDECSLDRISYNMLTY-----GLCKADQIDRALAVFGEMEENAVVPSLLTYNGL 182

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           +  YC A       G    A+ L EE + G     V+  PD+ SY ++I+  CK   +  
Sbjct: 183 LYGYCRA-------GRMEQAMTLLEEMIEGKKGSDVV--PDMYSYNTVISGFCKARQLPT 233

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A+ +   M   G  P+VV +++L+DG CL G++D+A  +F  +    C P   +Y  LI 
Sbjct: 234 ARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLIT 293

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
            +++  ++++A   + +M+  GV P                      ++  +  L+ GLC
Sbjct: 294 GHARALRIDKANDYFVDMLRRGVEP----------------------NVYTYTALIGGLC 331

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
            + ++  A E+ K++   G EPNVVTYT +I  LC  G IE+A  L  D
Sbjct: 332 DANKVEDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERATKLFND 380



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 110/444 (24%), Positives = 191/444 (43%), Gaps = 56/444 (12%)

Query: 74  FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
            F+ M++ +  P + ++  +L  L         + L + + +  L P    +N+L++C C
Sbjct: 59  IFDDMLYKECLPNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLC 118

Query: 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
           K  G  DA   L + L    S D ++   L  GLC   +   A  +F +         V+
Sbjct: 119 KN-GKVDAAYELYKRLSDECSLDRISYNMLTYGLCKADQIDRALAVFGEME----ENAVV 173

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDM----KGRGIYPDAFVYNSLIRVYCCAVNWED 249
           P+++ Y  ++ G C+ G + +   L  +M    KG  + PD + YN++I  +C       
Sbjct: 174 PSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFC------K 227

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
           A+   +A   L     +G       C P+V+++ ++++ LC    +D+A  +F  M  R 
Sbjct: 228 ARQLPTARYVLRRMIKSG-------CSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERN 280

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
             P  V Y+ LI G+    RID A   FV +   G  P+  +Y  LI       KVE+AL
Sbjct: 281 CEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDAL 340

Query: 370 SLYGEMISMGVRPD-------------NSCILEAAELFRTL---HNTKFELDLTVFNCLV 413
            +   M S G  P+                I  A +LF         K + D   ++ ++
Sbjct: 341 EILKRMSSTGREPNVVTYTRVIGALCKGGQIERATKLFNDAMGSRTAKCKPDSYAYSTII 400

Query: 414 DGLCKSWRLRSAWELFKKL--PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI 471
             LC+  +   A+E F ++   +   +P++  Y  M  GL          +L+ + E+  
Sbjct: 401 YWLCRQSKFLEAYEYFLRMVESKLVAKPHI--YKAMADGL----------ELVQETEKVE 448

Query: 472 RECLKA----IELLHKMAKRYVKP 491
           R CL+A    IEL  K A + + P
Sbjct: 449 RVCLEASAHGIELQQKDAPQPLNP 472



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 146/321 (45%), Gaps = 24/321 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERL----NTIGLLPDF 122
           +++ AL  F  M      P + ++N LL            + L E +        ++PD 
Sbjct: 156 QIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDM 215

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
            S N +++ FCK   +  A   L R+++   SP+VVT   L+ GLC+ GK  EA+ +F  
Sbjct: 216 YSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEY 275

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
            V  +C     P  + Y  +I G  +   ++K    F+DM  RG+ P+ + Y +LI   C
Sbjct: 276 MVERNCE----PTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLC 331

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
            A   ED       ALE+ +   +   E      P+V++Y  +I +LCK   +++A +LF
Sbjct: 332 DANKVED-------ALEILKRMSSTGRE------PNVVTYTRVIGALCKGGQIERATKLF 378

Query: 303 LD-MKSRGI--IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            D M SR     PD   YS++I   C   +  +A + F+ +     +     Y  + +  
Sbjct: 379 NDAMGSRTAKCKPDSYAYSTIIYWLCRQSKFLEAYEYFLRMVESKLVAKPHIYKAMADGL 438

Query: 360 SKIEKVEEALSLYGEMISMGV 380
             +++ E+   +  E  + G+
Sbjct: 439 ELVQETEKVERVCLEASAHGI 459



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 9/166 (5%)

Query: 66  VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
           + ++ A  +F  M+     P + ++ +L+G L       + + + +R+++ G  P+ V+ 
Sbjct: 299 LRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTY 358

Query: 126 NILMNCFCKMIGVSDAFV----ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             ++   CK   +  A      A+G    K   PD      +I  LC Q KF EA   F 
Sbjct: 359 TRVIGALCKGGQIERATKLFNDAMGSRTAKC-KPDSYAYSTIIYWLCRQSKFLEAYEYFL 417

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI 227
           + V       ++     Y ++ DGL       KV  + L+    GI
Sbjct: 418 RMV----ESKLVAKPHIYKAMADGLELVQETEKVERVCLEASAHGI 459



 Score = 40.0 bits (92), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 390 AAELFR-TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
           A+ +F+       FE  +  +N  ++ L K      A ++F  +      PN+ TY +++
Sbjct: 20  ASRVFKWAARQEDFEHTVFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTYGIVL 79

Query: 449 CGLCIEGGIEKAYDLLPDMEEKI 471
            GLC +   + A +LL DME K+
Sbjct: 80  RGLCDDAKTDAALELLQDMESKM 102


>gi|334186712|ref|NP_001190774.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|223635614|sp|P0C8Q3.1|PP326_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19890
 gi|332658842|gb|AEE84242.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 701

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 117/435 (26%), Positives = 194/435 (44%), Gaps = 48/435 (11%)

Query: 111 ERLNTIGLLPDFVSLNIL-MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCM 169
           + ++  G++PD  S  ++ + CF +   + +A   L  ++++ F PD  T   ++  LC 
Sbjct: 206 DEMSVRGVVPDSSSYKLMVIGCF-RDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCE 264

Query: 170 QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYP 229
            G    A   F K +    +PN+I     + S+IDGLCK G + +   +  +M   G  P
Sbjct: 265 NGLVNRAIWYFRKMIDLGFKPNLIN----FTSLIDGLCKKGSIKQAFEMLEEMVRNGWKP 320

Query: 230 DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSL 289
           + + + +LI   C        +G T  A  L  + V  +        P+V +Y S+I   
Sbjct: 321 NVYTHTALIDGLC-------KRGWTEKAFRLFLKLVRSD-----TYKPNVHTYTSMIGGY 368

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
           CK+  +++A+ LF  MK +G+ P+V  Y++LI+G+C  G    A +L   +  EG +P+ 
Sbjct: 369 CKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNI 428

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---------SC----ILEAAELFRT 396
            +YN  I+S  K  +  EA  L  +  S G+  D           C    I +A   F  
Sbjct: 429 YTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCR 488

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           ++ T FE D+ + N L+   C+  +++ +  LF+ +   G  P   TYT MI   C EG 
Sbjct: 489 MNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGD 548

Query: 457 IEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           I    DL             A++  H M +    PD  T   L   L K     E   L 
Sbjct: 549 I----DL-------------ALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLY 591

Query: 517 PSFLSRNQEESKLTR 531
            + + R     ++TR
Sbjct: 592 EAMIDRGLSPPEVTR 606



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 144/337 (42%), Gaps = 44/337 (13%)

Query: 162 CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD 221
           C++R     G+  EA G+            + P+ I    +++   + G +     +F +
Sbjct: 152 CMLRNFSEIGRLNEAVGMVMDMQ----NQGLTPSSITMNCVLEIAVELGLIEYAENVFDE 207

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGE----LGVICH- 276
           M  RG+ PD+  Y   + V  C  + +  + +      +   F+  N      L  +C  
Sbjct: 208 MSVRGVVPDSSSYK--LMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCEN 265

Query: 277 -------------------PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
                              P+++++ S+I+ LCK   + +A E+  +M   G  P+V  +
Sbjct: 266 GLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTH 325

Query: 318 SSLIDGYCLMGRIDDARKLFVS-IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
           ++LIDG C  G  + A +LF+  + S+   P+  +Y ++I  Y K +K+  A  L+  M 
Sbjct: 326 TALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMK 385

Query: 377 SMGVRPDNSCIL-------------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLR 423
             G+ P+ +                 A EL   + +  F  ++  +N  +D LCK  R  
Sbjct: 386 EQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAP 445

Query: 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
            A+EL  K    G E + VTYT++I   C +  I +A
Sbjct: 446 EAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQA 482



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 98/183 (53%), Gaps = 13/183 (7%)

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           +++A  + +DM+++G+ P  +  + +++    +G I+ A  +F  +   G +PD+SSY  
Sbjct: 163 LNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKL 222

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDN-SCIL------------EAAELFRTLHNTK 401
           ++    +  K++EA      MI  G  PDN +C L             A   FR + +  
Sbjct: 223 MVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLG 282

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
           F+ +L  F  L+DGLCK   ++ A+E+ +++ R G +PNV T+T +I GLC  G  EKA+
Sbjct: 283 FKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAF 342

Query: 462 DLL 464
            L 
Sbjct: 343 RLF 345



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 151/387 (39%), Gaps = 46/387 (11%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + ++ S++G    +        L  R+   GL P+  +   L+N  CK      A+  
Sbjct: 356 PNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYEL 415

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           +  +  + F P++ T    I  LC + +  EA  L  K  AF C   +  + + Y  +I 
Sbjct: 416 MNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNK--AFSC--GLEADGVTYTILIQ 471

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
             CK   +N+    F  M   G   D  + N LI  +C               ++  E  
Sbjct: 472 EQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFC-----------RQKKMKESERL 520

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
                 LG+I  P   +Y S+I+  CK+  +D A + F +MK  G +PD   Y SLI G 
Sbjct: 521 FQLVVSLGLI--PTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGL 578

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           C    +D+A KL+ ++   G  P   +  TL   Y K      A+ L        + P  
Sbjct: 579 CKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRNDSANAMIL--------LEP-- 628

Query: 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
              L+     RT+              LV  LC   ++  A   F+KL       + VT 
Sbjct: 629 ---LDKKLWIRTVRT------------LVRKLCSEKKVGVAALFFQKLLEKDSSADRVTL 673

Query: 445 TVMICGLCIEGGIEKAYDLLPDMEEKI 471
                  C E G     +L+ D+ E+I
Sbjct: 674 AAFTTA-CSESGKN---NLVTDLTERI 696


>gi|225445222|ref|XP_002280919.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222
           [Vitis vinifera]
 gi|297738818|emb|CBI28063.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 119/481 (24%), Positives = 200/481 (41%), Gaps = 61/481 (12%)

Query: 39  LHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALA 98
           L +NS  TV  +TKL+  L E  K  E +L      FN +      P + ++ +LL AL 
Sbjct: 63  LGNNSCRTVRSRTKLMNILIEKGKPQEAQL-----IFNSLTEEGHRPTLITYTTLLAALT 117

Query: 99  GKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVV 158
            +K + +   L  +L   GL PD V  N ++N F +   V +A     ++  +   P   
Sbjct: 118 RQKRFKSIPSLISKLEKNGLKPDSVFFNAMINAFSESGNVKEAMKIFRKMKDRGCKPTTS 177

Query: 159 TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVL 218
           T   LI+G    G   E   L           NV PN   + S+I   C    + +   +
Sbjct: 178 TFNTLIKGYGNAGMPEECLKLLD---LMSQEENVKPNDRTFNSLIRAWCNKKRITEAWNV 234

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD 278
              M   G+ PD   YN+L R Y          G TS A  +  E  N          P+
Sbjct: 235 VYKMAASGLQPDVVTYNTLARAYA-------QNGETSRAEGMILEMQNNR------VMPN 281

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
             +   IIN  CK+  +  A      M++ G+ P++V+++SLI G+  +   D   +   
Sbjct: 282 ERTCGIIINGYCKEGKMKDALRFLYRMRNYGVHPNLVIFNSLIKGFLDITDTDGVDEALT 341

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398
            +E  G  PD  +++T++N++S +  +++   ++ +M+  G+ P                
Sbjct: 342 LMEEFGVKPDVVTFSTIMNAWSSVGLMDKCQEIFDDMVKAGIEP---------------- 385

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
                 D+  F+ L  G  ++     A  L   + + G +PNVV +T +I G C  G +E
Sbjct: 386 ------DIHAFSILAKGYVRAGEPEKAESLLTAMGKSGVQPNVVIFTTIISGWCSAGKME 439

Query: 459 KAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILE 500
            A  +   M E                  + +E  KA ELL  M ++ V P + T+ ++ 
Sbjct: 440 YASRVYEKMCEMGICPNLKTFETLIWGYGEAKEPQKAEELLQIMEQKGVAPVKSTIQLVA 499

Query: 501 E 501
           +
Sbjct: 500 D 500


>gi|42567170|ref|NP_194410.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332659854|gb|AEE85254.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 369

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 177/375 (47%), Gaps = 30/375 (8%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           ++  +G+ PD V+ + L+N FC    + DA    G++ +     DVV    LI  LC   
Sbjct: 3   KMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNR 62

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
               A  +  +         + PNV+ Y+S+I GLCK G +        +M  + I P+ 
Sbjct: 63  LVVPALEVLKRM----KDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNV 118

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
             +++LI  Y         +G  S    +++  +       +   P+V +Y S+I  LC 
Sbjct: 119 ITFSALIDAYA-------KRGKLSKVDSVYKMMIQ------MSIDPNVFTYSSLIYGLCM 165

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
              VD+A ++   M S+G  P+VV YS+L +G+    R+DD  KL   +   G   +T S
Sbjct: 166 HNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVS 225

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLH 398
            NTLI  Y +  K++ AL ++G M S G+ P+             N  + +A   F  + 
Sbjct: 226 CNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQ 285

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
            T+ +LD+  +  ++ G+CK+  ++ A++LF KL     EP+   YT+MI  L   G   
Sbjct: 286 KTRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLKFKRVEPDFKAYTIMIAELNRAGMRT 345

Query: 459 KAYDLLPDMEEKIRE 473
           +A  L    ++ +R+
Sbjct: 346 EADALNRFYQKHVRQ 360



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 122/253 (48%), Gaps = 37/253 (14%)

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGE-LGVICHP 277
            L M   GI PD    +SL+  +C + + +DA             +V G  E +G+    
Sbjct: 1   MLKMMKLGIEPDIVTASSLVNGFCLSNSIKDA------------VYVAGQMEKMGI--KR 46

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           DV+    +I++LCK+ LV  A E+   MK RGI P+VV YSSLI G C  GR+ DA +  
Sbjct: 47  DVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRL 106

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397
             ++S+   P+  +++ LI++Y+K  K+ +  S+Y  MI M + P               
Sbjct: 107 HEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDP--------------- 151

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                  ++  ++ L+ GLC   R+  A ++   +   G  PNVVTY+ +  G      +
Sbjct: 152 -------NVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRV 204

Query: 458 EKAYDLLPDMEEK 470
           +    LL DM ++
Sbjct: 205 DDGIKLLDDMPQR 217



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 103/261 (39%), Gaps = 54/261 (20%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           +K G++   D++  +  MI M   P + +++SL+  L         I + + + + G  P
Sbjct: 129 AKRGKLSKVDSV--YKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTP 186

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           + V+ + L N F K   V D    L  + ++  + + V+   LI+G    GK   A G+F
Sbjct: 187 NVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVF 246

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
                +     +IPN+  Y  ++ GL  +G V K                          
Sbjct: 247 ----GYMTSNGLIPNIRSYNIVLAGLFANGEVEK-------------------------- 276

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
                           AL   E       +L +I      +Y  +I+ +CK  +V +A +
Sbjct: 277 ----------------ALSRFEHMQKTRNDLDII------TYTIMIHGMCKACMVKEAYD 314

Query: 301 LFLDMKSRGIIPDVVVYSSLI 321
           LF  +K + + PD   Y+ +I
Sbjct: 315 LFYKLKFKRVEPDFKAYTIMI 335


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 122/460 (26%), Positives = 194/460 (42%), Gaps = 70/460 (15%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L+ AL  FN M      P   ++++L+  L           L   +   G+LP   +  
Sbjct: 265 DLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCT 324

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
             +   C M    DA+     +  K   P+V T   LI GLC+ G    A GLF +    
Sbjct: 325 GPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRD 384

Query: 187 DCRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKV 215
              PN +                               PN++ Y  +I G C  G   K 
Sbjct: 385 GVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKA 444

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
            ++  +M  RG   +   YN++I+ YC         GNT++AL + +   +G       C
Sbjct: 445 MLVMNNMLQRGHSANLVTYNTIIKGYC-------DSGNTTSALRILDLMRDGG------C 491

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
            PD  SY  +I   CK   ++ A  LF +M   G+ P+ V Y++LIDGYC   ++D A  
Sbjct: 492 KPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATS 551

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395
           L   ++  GC P+  +YN LI+  +K      A  L   MI  G+ P+            
Sbjct: 552 LLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPN------------ 599

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
                     +  +  ++DGLCK+     A E+F K+   G  PN++TY+ +I  L  EG
Sbjct: 600 ----------VVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEG 649

Query: 456 GIEKAYDLLPDMEEKIRECLKAIELLH-KMAKRYVKPDEI 494
            +E+A +L  ++E   R  L   E+ + KM + Y+   ++
Sbjct: 650 KVEEAENLFAELE---RHGLIPDEITYVKMIEAYIMSGKV 686



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 127/480 (26%), Positives = 197/480 (41%), Gaps = 99/480 (20%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
            R+ + G+ P+ +  N ++N  CK   V+DA   + ++     SPD  T   +I G C +
Sbjct: 204 HRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRK 263

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV--------------- 215
                A  +F +     C PN +     Y+++I+GLC  G VN+                
Sbjct: 264 HDLDSALQVFNQMAKEGCEPNTV----TYSTLINGLCDSGRVNEAFDLIREMILHGILPT 319

Query: 216 --------------------RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG--- 252
                                 LF+DMK +G  P+ + Y +LI   C +   + A G   
Sbjct: 320 AHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFH 379

Query: 253 ---------NT---SAALELHEE---------FVNGNGELGVICHPDVLSYCSIINSLCK 291
                    NT   +A + +  E          +N  G  G  C P++++Y  +I   C 
Sbjct: 380 RMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNG--CSPNIVTYNEMIKGYC- 436

Query: 292 DVLVDKAKELFL--DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
            +L D  K + +  +M  RG   ++V Y+++I GYC  G    A ++   +   GC PD 
Sbjct: 437 -ILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDE 495

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSCILE----AAELFRT 396
            SY  LI  + KI K+E A  L+ EM+  G+ P         D  C  E    A  L   
Sbjct: 496 WSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEH 555

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           +  +    ++  +N L+ GL K      A EL K +   G  PNVVTYT MI GLC  G 
Sbjct: 556 MKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGS 615

Query: 457 IEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
              A                 +E+ +KM ++   P+ +T S L   L ++    E  NL 
Sbjct: 616 TSLA-----------------LEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLF 658



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 98/385 (25%), Positives = 176/385 (45%), Gaps = 41/385 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALA-GKKYYVNFICLSERLNTIGLLPDFVSLN 126
           L  A+  F+ M      P   ++N+L+  L   ++    F+ L+  +   G  P+ V+ N
Sbjct: 371 LKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLN-LMGRNGCSPNIVTYN 429

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            ++  +C +     A + +  +L++  S ++VT   +I+G C  G  T A  +       
Sbjct: 430 EMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDG 489

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C+P+       Y  +I G CK   +     LF +M   G+ P+   Y +LI  YC    
Sbjct: 490 GCKPDEWS----YTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYC---- 541

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            +D K +T+ +L  H +           C P+V +Y  +I+ L K      A+EL   M 
Sbjct: 542 -KDEKLDTATSLLEHMKRSG--------CRPNVQTYNVLIHGLTKQNNFSGAEELCKVMI 592

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
             GI P+VV Y+++IDG C  G    A ++F  +  +GC+P+  +Y++LI +  +  KVE
Sbjct: 593 EEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVE 652

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           EA +L+ E+   G+ PD    ++                      +++    S ++  A+
Sbjct: 653 EAENLFAELERHGLIPDEITYVK----------------------MIEAYIMSGKVEHAF 690

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGL 451
               ++ + G +P + TY V+I GL
Sbjct: 691 NFLGRMIKAGCQPTLWTYGVLIKGL 715



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 122/244 (50%), Gaps = 27/244 (11%)

Query: 219 FLDMKGR-GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277
           FLDM  + G+    F Y++L+ ++   +      G T+A ++ +   ++     GV   P
Sbjct: 167 FLDMLSQSGLRMGLFAYSALL-IHLSRL------GMTAAVMDRYHRMLSE----GV--QP 213

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           ++L Y ++IN+LCKD  V  A+ +   +    + PD   Y+S+I G+C    +D A ++F
Sbjct: 214 NLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVF 273

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP-------------DN 384
             +  EGC P+T +Y+TLIN      +V EA  L  EMI  G+ P             D 
Sbjct: 274 NQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDM 333

Query: 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
            C  +A  LF  + N   E ++  +  L+ GLC S  L+ A  LF ++ R G  PN VTY
Sbjct: 334 GCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTY 393

Query: 445 TVMI 448
             +I
Sbjct: 394 NALI 397



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 132/303 (43%), Gaps = 56/303 (18%)

Query: 196 VICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA----- 250
           +  Y++++  L + G    V   +  M   G+ P+  +YN++I   C   N  DA     
Sbjct: 180 LFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMK 239

Query: 251 -----------------------KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIIN 287
                                  K +  +AL++  +           C P+ ++Y ++IN
Sbjct: 240 KVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEG------CEPNTVTYSTLIN 293

Query: 288 SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
            LC    V++A +L  +M   GI+P     +  I   C MG  +DA +LFV ++++GC P
Sbjct: 294 GLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEP 353

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLT 407
           +  +Y  LI+       ++ A+ L+  M   GV P+                        
Sbjct: 354 NVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNT----------------------V 391

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            +N L++ L ++ R++ A+ +   + R G  PN+VTY  MI G CI G  +KA  ++ +M
Sbjct: 392 TYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNM 451

Query: 468 EEK 470
            ++
Sbjct: 452 LQR 454



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 176/422 (41%), Gaps = 51/422 (12%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++  A   FN M+     P   ++ +L+      +       L E +   G  P+  + N
Sbjct: 510 KMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYN 569

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +L++   K    S A      ++ +   P+VVT   +I GLC  G  + A  +F K +  
Sbjct: 570 VLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQ 629

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C    +PN++ Y+S+I  L ++G V +   LF +++  G+ PD   Y  +I  Y  +  
Sbjct: 630 GC----LPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGK 685

Query: 247 WEDA--------KGNTSAAL--------ELHEEFVNGNGELGVICHPDVLSYCSI-INSL 289
            E A        K      L         L  E++  +  L  +  PDV+  CS    + 
Sbjct: 686 VEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAAL--PDVVPNCSFGYQTT 743

Query: 290 CKD-VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
            +D V V  AK   LD    G+   V V ++L+      GR  +A +L  S+ S+G  PD
Sbjct: 744 DQDAVSVMSAKLAELD---PGL--SVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPD 798

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTV 408
             +YN+L+ S  ++  V+ A+ ++  M + G                       E+ L  
Sbjct: 799 QEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGC----------------------EVHLNG 836

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +  L+  LC+  R + A   F+ +      P+ V   V+I GL  +G  +   + L  ME
Sbjct: 837 YKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIME 896

Query: 469 EK 470
            +
Sbjct: 897 TR 898


>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Cucumis sativus]
          Length = 606

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 122/449 (27%), Positives = 190/449 (42%), Gaps = 70/449 (15%)

Query: 54  LKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERL 113
            ++L    +SG +EL   + F   M+       + S+ +++  L  K   V    L + L
Sbjct: 161 FEFLLALKRSGNMEL--CVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDEL 218

Query: 114 NTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF 173
              G  P  ++ N L+N + ++  V      L  + + V   +V T   LI       K 
Sbjct: 219 VCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKI 278

Query: 174 TEASGLFTK-----------------------------FVAFD--CRPNVIPNVICYASI 202
            EA  LF +                             FV FD      ++PN   Y ++
Sbjct: 279 EEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGAL 338

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
           I+G CK G +    ++  DM+ +G+  +  ++N+L+  YC        KG    AL L  
Sbjct: 339 INGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYC-------KKGMIDEALRLQN 391

Query: 263 EFVNGNGELGVICHPDVLSYCSIINS-LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
                  E+           C+II S  C+    ++AK L L M+ RG+ P+VV +S LI
Sbjct: 392 IMQQKGFEIDAFT-------CNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILI 444

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
           D YC      +AR+LF  +E +G  P   +YN  I  Y K  K+EEA  L  EM   G+ 
Sbjct: 445 DIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLM 504

Query: 382 PDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
           PD                         +  L+DG   S  +  A ELF ++P+ G   NV
Sbjct: 505 PDT----------------------YTYTSLIDGERASGNVDRALELFNEMPQLGLNRNV 542

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           VTYTV+I GL  +G  ++A+ L  +M ++
Sbjct: 543 VTYTVIISGLSKDGRADEAFKLYDEMNKE 571



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 136/304 (44%), Gaps = 29/304 (9%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ PD      ++N  CK   +  AFV    +  +   P+  T G LI G C  G+   A
Sbjct: 292 GIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAA 351

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             +     +      V  N + + +++DG CK G +++   L   M+ +G   DAF  N 
Sbjct: 352 EMMVNDMQS----KGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNI 407

Query: 237 LIRVYCCAVNWEDAKG---------------NTSAALELH---EEFVNGNGELGVICH-- 276
           +   +C +   E+AK                + S  ++++   + F        V+    
Sbjct: 408 IASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKG 467

Query: 277 --PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
             P V++Y + I   CK   +++A +L  +M+ RG++PD   Y+SLIDG    G +D A 
Sbjct: 468 KAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRAL 527

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
           +LF  +   G   +  +Y  +I+  SK  + +EA  LY EM   G+ PD+      + L 
Sbjct: 528 ELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIY---SSLI 584

Query: 395 RTLH 398
            +LH
Sbjct: 585 ASLH 588



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 137/301 (45%), Gaps = 29/301 (9%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLL------GALAGKKYYVNFICLSERLNTIGLLPD 121
           +  A   F+ M   +  P   ++ +L+      G +   +  VN       + + G+  +
Sbjct: 313 MKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVN------DMQSKGVDVN 366

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V  N LM+ +CK   + +A      + +K F  D  T   +  G C   +  EA  L  
Sbjct: 367 RVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLL- 425

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
             +  + R  V PNV+ ++ +ID  CK+    + R LF  M+ +G  P    YN+ I  Y
Sbjct: 426 --LTMEER-GVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERY 482

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C        KG    A +L    +N   E G++  PD  +Y S+I+       VD+A EL
Sbjct: 483 C-------KKGKMEEAYKL----INEMQERGLM--PDTYTYTSLIDGERASGNVDRALEL 529

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F +M   G+  +VV Y+ +I G    GR D+A KL+  +  EG +PD   Y++LI S  K
Sbjct: 530 FNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHK 589

Query: 362 I 362
           +
Sbjct: 590 V 590



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 104/423 (24%), Positives = 181/423 (42%), Gaps = 61/423 (14%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDG-LCKDGFVN 213
           PD+     L   L    KF E   +  KF+  D   N+  NV    S I G   +   V 
Sbjct: 66  PDLPAHLILFSRLYRARKFAEMKNVL-KFIVND--GNLWSNVERIVSSIGGEFNEPSIVE 122

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG---------------NTSAAL 258
           K    F DM  R +Y D  +++S + V+    ++   KG                 S  +
Sbjct: 123 K----FCDMLFR-VYMDNRMFDSSLEVF----DYARKKGFEIDERSCFEFLLALKRSGNM 173

Query: 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS 318
           EL  EF+    + G+     V S+ ++++ LCK   V +AK L  ++  +G  P V+ Y+
Sbjct: 174 ELCVEFLRQMVDSGIEIR--VCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYN 231

Query: 319 SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
           +L++GY  +  +    ++   +E      + ++Y  LI  YS+  K+EEA  L+ EM+  
Sbjct: 232 TLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKK 291

Query: 379 GVRPD----NSCI---------LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
           G+ PD     S I           A  LF  +   +   +   +  L++G CK+  +++A
Sbjct: 292 GIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAA 351

Query: 426 WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC----------- 474
             +   +   G + N V +  ++ G C +G I++A  L   M++K  E            
Sbjct: 352 EMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASG 411

Query: 475 -------LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEES 527
                   +A  LL  M +R V P+ ++ SIL ++  K++N  E   L      + +  S
Sbjct: 412 FCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPS 471

Query: 528 KLT 530
            +T
Sbjct: 472 VVT 474


>gi|225465635|ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial [Vitis vinifera]
 gi|296085293|emb|CBI29025.3| unnamed protein product [Vitis vinifera]
          Length = 854

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 151/323 (46%), Gaps = 39/323 (12%)

Query: 148 ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207
           +++++  PD  +   +I GLC  GK   A  LF   V   C+ NV+     Y ++ID L 
Sbjct: 448 MVKEMVRPDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVL----LYNNLIDKLS 503

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
               + +  +L  +MKG G  P  F +NS   ++ C    ED  G      E+    V+G
Sbjct: 504 NSNRLEECYLLLKEMKGSGFRPTQFTHNS---IFGCLCRREDVTGALDMVREMR---VHG 557

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
           +        P +  Y  ++  LCK     +A     +M   G +PD+V YS+ IDG+  +
Sbjct: 558 H-------EPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKI 610

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
             +D A ++F  I + G  PD  +YNTLIN + K+++V EA  +  EM++ G+ P     
Sbjct: 611 KAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVP----- 665

Query: 388 LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
                             +  +N L+DG CK+  +  A+    ++     EPNV+TYT +
Sbjct: 666 -----------------SVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTL 708

Query: 448 ICGLCIEGGIEKAYDLLPDMEEK 470
           I GLC  G  + A  L  +M  K
Sbjct: 709 IDGLCNAGRPDDAIHLWNEMRGK 731



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 144/313 (46%), Gaps = 19/313 (6%)

Query: 63  SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF 122
           +G+++L  AL  F  M+ +     +  +N+L+  L+          L + +   G  P  
Sbjct: 470 TGKLDL--ALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKGSGFRPTQ 527

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
            + N +  C C+   V+ A   +  +      P +     L++ LC + +  EA     +
Sbjct: 528 FTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAE 587

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
            V    R   +P+++ Y++ IDG  K   V++   +F D+  RG  PD   YN+LI  +C
Sbjct: 588 MV----REGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFC 643

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
                       S A ++ +E V      G++  P V++Y  +I+  CK+  +D+A    
Sbjct: 644 -------KVKRVSEAHDILDEMVAK----GLV--PSVVTYNLLIDGWCKNGDIDQAFHCL 690

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
             M  +   P+V+ Y++LIDG C  GR DDA  L+  +  +GC P+  S+  LI+   K 
Sbjct: 691 SRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKC 750

Query: 363 EKVEEALSLYGEM 375
              + AL  + EM
Sbjct: 751 GWPDAALLYFREM 763



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 95/417 (22%), Positives = 164/417 (39%), Gaps = 59/417 (14%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L ER+  +G+  +  +  +L++ F +   V  A     ++ +  F+PDV     LI GLC
Sbjct: 290 LIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLC 349

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVI-----------------------------PNVICY 199
            + +  +A  L ++       P++                                ++ Y
Sbjct: 350 AKKEIEKALHLLSEMKELGIDPDIQILSKLIAYCSEEVDIYRLIEERLEDLDTEAMLLLY 409

Query: 200 ASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV----------YCCAVNWED 249
            S+++GL     V+K   L   M G   Y D F  N    V          +   ++   
Sbjct: 410 NSVLNGLVNGKSVDKAYYLLRAMTGDN-YTDNFEVNKFFMVKEMVRPDTTSFSIVIDGLC 468

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
             G    AL L  + V       V C  +VL Y ++I+ L     +++   L  +MK  G
Sbjct: 469 NTGKLDLALSLFRDMVR------VGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKGSG 522

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
             P    ++S+    C    +  A  +   +   G  P    Y  L+    K ++  EA 
Sbjct: 523 FRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAEAC 582

Query: 370 SLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           +   EM+  G  PD                + +A E+FR +    +  D+  +N L++G 
Sbjct: 583 NFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGF 642

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
           CK  R+  A ++  ++   G  P+VVTY ++I G C  G I++A+  L  M  K RE
Sbjct: 643 CKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKERE 699



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 148/336 (44%), Gaps = 44/336 (13%)

Query: 159 TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVL 218
            LG  IR L   G   EA+ LF +          +PN   +  +++ + K G ++ V + 
Sbjct: 165 ALGFFIRCLGSTGLVEEANLLFDQVKMMRL---CVPNSYSFNCLLEAISKSGSIDLVEMR 221

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD 278
             +M   G  PD +   S+++ YC +  ++        AL +  E + G G +       
Sbjct: 222 LKEMCDSGWEPDKYTLTSVLQAYCNSRKFD-------KALSVFNE-IYGRGWV----DGH 269

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
           VLS   +  S C +V  DKA EL   M+  GI  +   +  LI G+    R+D A +LF 
Sbjct: 270 VLSILVLTFSKCGEV--DKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFK 327

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI-------LEAA 391
            ++  G  PD S Y+ LI      +++E+AL L  EM  +G+ PD   +        E  
Sbjct: 328 KMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIAYCSEEV 387

Query: 392 ELFRTLHNTKFELD----LTVFNCLVDGLCKSWRLRSAWELFKKLP-------------- 433
           +++R +     +LD    L ++N +++GL     +  A+ L + +               
Sbjct: 388 DIYRLIEERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLRAMTGDNYTDNFEVNKFF 447

Query: 434 --RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
             +    P+  +++++I GLC  G ++ A  L  DM
Sbjct: 448 MVKEMVRPDTTSFSIVIDGLCNTGKLDLALSLFRDM 483



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 106/426 (24%), Positives = 167/426 (39%), Gaps = 47/426 (11%)

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
           L+IL+  F K   V  AF  + R+       +  T   LI G   Q +  +A  LF K  
Sbjct: 271 LSILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQ 330

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
               +    P+V  Y ++I GLC    + K   L  +MK  GI PD  + + LI  YC  
Sbjct: 331 ----KSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLI-AYCSE 385

Query: 245 -------VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
                  +       +T A L L+   +NG     ++    V     ++ ++  D   D 
Sbjct: 386 EVDIYRLIEERLEDLDTEAMLLLYNSVLNG-----LVNGKSVDKAYYLLRAMTGDNYTDN 440

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
            +     M    + PD   +S +IDG C  G++D A  LF  +   GC  +   YN LI+
Sbjct: 441 FEVNKFFMVKEMVRPDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLID 500

Query: 358 SYSKIEKVEEALSLYGEMISMGVRP----DNSC---------ILEAAELFRTLHNTKFEL 404
             S   ++EE   L  EM   G RP     NS          +  A ++ R +     E 
Sbjct: 501 KLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEP 560

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            +  +  LV  LCK  R   A     ++ R G  P++V Y+  I G              
Sbjct: 561 WIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFV------------ 608

Query: 465 PDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQ 524
                KI+   +A+E+   +  R   PD +  + L     K +   E  ++L   +++  
Sbjct: 609 -----KIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGL 663

Query: 525 EESKLT 530
             S +T
Sbjct: 664 VPSVVT 669



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 23/196 (11%)

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
           +C P+  S+  ++ ++ K   +D  +    +M   G  PD    +S++  YC   + D A
Sbjct: 194 LCVPNSYSFNCLLEAISKSGSIDLVEMRLKEMCDSGWEPDKYTLTSVLQAYCNSRKFDKA 253

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAEL 393
             +F  I   G + D    + L+ ++SK  +V++A  L   M  +G+R            
Sbjct: 254 LSVFNEIYGRGWV-DGHVLSILVLTFSKCGEVDKAFELIERMEDLGIR------------ 300

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
                     L+   F  L+ G  +  R+  A +LFKK+ + G  P+V  Y  +I GLC 
Sbjct: 301 ----------LNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCA 350

Query: 454 EGGIEKAYDLLPDMEE 469
           +  IEKA  LL +M+E
Sbjct: 351 KKEIEKALHLLSEMKE 366


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 130/464 (28%), Positives = 210/464 (45%), Gaps = 49/464 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFIC-LSERLNTIGLLPDFVSLN 126
           LN+A  FF+ +++        S N  L  L+ K+  +  +  +      +G+  +  S N
Sbjct: 55  LNEARKFFDKLLNYGVALSAGSCNLYLTCLSSKRDMLGMVLKVFSEFPQLGVCWNTESYN 114

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           ILMN   ++  + +A   L R+  K   PDVV+   +I G C  G+  +   L  +    
Sbjct: 115 ILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQL- 173

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                + PN+  Y+SII  LCK G V +   +  +M  RG++PD  +Y +LI  +C    
Sbjct: 174 ---KGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFC---- 226

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                GNT AA +L  E      E   I  PD +++ ++I  L     V +A +LF +M 
Sbjct: 227 ---KLGNTQAAYKLFSEM-----EAREIV-PDSIAFSALICGLSGSGKVVEADKLFNEMI 277

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            +G  PD V Y++LIDGYC +G +  A  L   +   G  P+  +Y  L +   K  +++
Sbjct: 278 KKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELD 337

Query: 367 EALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDLTVFNCLV 413
            A  L  EM   G++ + S              IL+A +L   +       D   +  L+
Sbjct: 338 TANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLM 397

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK--- 470
           D   K+  +  A EL +++   G +P VVT+ V++ GLC+ G +E    LL  M EK   
Sbjct: 398 DAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIM 457

Query: 471 --------------IRECLK-AIELLHKMAKRYVKPDEITVSIL 499
                         IR  ++ + E+   M  + V PD  T +IL
Sbjct: 458 PNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNIL 501



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/403 (25%), Positives = 184/403 (45%), Gaps = 60/403 (14%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ PD V    L++ FCK+     A+     +  +   PD +    LI GL   GK  EA
Sbjct: 210 GVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEA 269

Query: 177 SGLFTKFVAFDCRPNVI-------------------------------PNVICYASIIDG 205
             LF + +     P+ +                               PNV+ Y ++ DG
Sbjct: 270 DKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADG 329

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
           LCK G ++    L  +M  +G+  +   YN+++   C A       GN   A++L EE  
Sbjct: 330 LCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKA-------GNILQAVKLMEEM- 381

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
               E G+  HPD ++Y +++++  K   + KA+EL  +M  RG+ P VV ++ L++G C
Sbjct: 382 ---KEAGL--HPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLC 436

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
           + G+++D  +L   +  +G +P+ ++YN+++  Y     +  +  +Y  M + GV PD++
Sbjct: 437 MSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSN 496

Query: 386 C-------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
                         + EA  L + +   +F L  + +N L+ G  K  +L  A +LF+++
Sbjct: 497 TYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEM 556

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL 475
            R G   +   Y + +     EG +E   +L    +E I +CL
Sbjct: 557 RREGLVASAEIYNLFVDMNYEEGNMETTLELC---DEAIEKCL 596



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 120/264 (45%), Gaps = 25/264 (9%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           KSGE++  + L   + M        + ++N+++  L      +  + L E +   GL PD
Sbjct: 332 KSGELDTANEL--LHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPD 389

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            ++   LM+ + K   +  A   L  +L +   P VVT   L+ GLCM GK  +      
Sbjct: 390 TITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGE---- 445

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRV---LFLDMKGRGIYPDAFVYNSLI 238
           + + +     ++PN   Y SI+   C     N +R+   ++  M  +G+ PD+  YN LI
Sbjct: 446 RLLKWMLEKGIMPNAATYNSIMKQYC---IRNNMRISTEIYRGMCAQGVVPDSNTYNILI 502

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
           + +C A N ++       A  LH+E V     L         SY ++I    K   + +A
Sbjct: 503 KGHCKARNMKE-------AWFLHKEMVEKRFNL------TASSYNALIKGFFKRKKLLEA 549

Query: 299 KELFLDMKSRGIIPDVVVYSSLID 322
           ++LF +M+  G++    +Y+  +D
Sbjct: 550 RQLFEEMRREGLVASAEIYNLFVD 573


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 122/460 (26%), Positives = 194/460 (42%), Gaps = 70/460 (15%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L+ AL  FN M      P   ++++L+  L           L   +   G+LP   +  
Sbjct: 265 DLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCT 324

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
             +   C M    DA+     +  K   P+V T   LI GLC+ G    A GLF +    
Sbjct: 325 GPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRD 384

Query: 187 DCRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKV 215
              PN +                               PN++ Y  +I G C  G   K 
Sbjct: 385 GVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKA 444

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
            ++  +M  RG   +   YN++I+ YC         GNT++AL + +   +G       C
Sbjct: 445 MLVMNNMLQRGHSANLVTYNTIIKGYC-------DSGNTTSALRILDLMRDGG------C 491

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
            PD  SY  +I   CK   ++ A  LF +M   G+ P+ V Y++LIDGYC   ++D A  
Sbjct: 492 KPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATS 551

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395
           L   ++  GC P+  +YN LI+  +K      A  L   MI  G+ P+            
Sbjct: 552 LLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPN------------ 599

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
                     +  +  ++DGLCK+     A E+F K+   G  PN++TY+ +I  L  EG
Sbjct: 600 ----------VVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEG 649

Query: 456 GIEKAYDLLPDMEEKIRECLKAIELLH-KMAKRYVKPDEI 494
            +E+A +L  ++E   R  L   E+ + KM + Y+   ++
Sbjct: 650 KVEEAENLFAELE---RHGLIPDEITYVKMIEAYIMSGKV 686



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 127/480 (26%), Positives = 197/480 (41%), Gaps = 99/480 (20%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
            R+ + G+ P+ +  N ++N  CK   V+DA   + ++     SPD  T   +I G C +
Sbjct: 204 HRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRK 263

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV--------------- 215
                A  +F +     C PN +     Y+++I+GLC  G VN+                
Sbjct: 264 HDLDSALQVFNQMAKEGCEPNTV----TYSTLINGLCDSGRVNEAFDLIREMILHGILPT 319

Query: 216 --------------------RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG--- 252
                                 LF+DMK +G  P+ + Y +LI   C +   + A G   
Sbjct: 320 AHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFH 379

Query: 253 ---------NT---SAALELHEE---------FVNGNGELGVICHPDVLSYCSIINSLCK 291
                    NT   +A + +  E          +N  G  G  C P++++Y  +I   C 
Sbjct: 380 RMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNG--CSPNIVTYNEMIKGYC- 436

Query: 292 DVLVDKAKELFL--DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
            +L D  K + +  +M  RG   ++V Y+++I GYC  G    A ++   +   GC PD 
Sbjct: 437 -ILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDE 495

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSCILE----AAELFRT 396
            SY  LI  + KI K+E A  L+ EM+  G+ P         D  C  E    A  L   
Sbjct: 496 WSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEH 555

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           +  +    ++  +N L+ GL K      A EL K +   G  PNVVTYT MI GLC  G 
Sbjct: 556 MKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGS 615

Query: 457 IEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
              A                 +E+ +KM ++   P+ +T S L   L ++    E  NL 
Sbjct: 616 TSLA-----------------LEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLF 658



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 98/385 (25%), Positives = 176/385 (45%), Gaps = 41/385 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALA-GKKYYVNFICLSERLNTIGLLPDFVSLN 126
           L  A+  F+ M      P   ++N+L+  L   ++    F+ L+  +   G  P+ V+ N
Sbjct: 371 LKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLN-LMGRNGCSPNIVTYN 429

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            ++  +C +     A + +  +L++  S ++VT   +I+G C  G  T A  +       
Sbjct: 430 EMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDG 489

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C+P+       Y  +I G CK   +     LF +M   G+ P+   Y +LI  YC    
Sbjct: 490 GCKPDEWS----YTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYC---- 541

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            +D K +T+ +L  H +           C P+V +Y  +I+ L K      A+EL   M 
Sbjct: 542 -KDEKLDTATSLLEHMKRSG--------CRPNVQTYNVLIHGLTKQNNFSGAEELCKVMI 592

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
             GI P+VV Y+++IDG C  G    A ++F  +  +GC+P+  +Y++LI +  +  KVE
Sbjct: 593 EEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVE 652

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           EA +L+ E+   G+ PD    ++                      +++    S ++  A+
Sbjct: 653 EAENLFAELERHGLIPDEITYVK----------------------MIEAYIMSGKVEHAF 690

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGL 451
               ++ + G +P + TY V+I GL
Sbjct: 691 NFLGRMIKAGCQPTLWTYGVLIKGL 715



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 122/244 (50%), Gaps = 27/244 (11%)

Query: 219 FLDMKGR-GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277
           FLDM  + G+    F Y++L+ ++   +      G T+A ++ +   ++     GV   P
Sbjct: 167 FLDMLSQSGLRMGLFAYSALL-IHLSRL------GMTAAVMDRYHRMLSE----GV--QP 213

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           ++L Y ++IN+LCKD  V  A+ +   +    + PD   Y+S+I G+C    +D A ++F
Sbjct: 214 NLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVF 273

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP-------------DN 384
             +  EGC P+T +Y+TLIN      +V EA  L  EMI  G+ P             D 
Sbjct: 274 NQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDM 333

Query: 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
            C  +A  LF  + N   E ++  +  L+ GLC S  L+ A  LF ++ R G  PN VTY
Sbjct: 334 GCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTY 393

Query: 445 TVMI 448
             +I
Sbjct: 394 NALI 397



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 132/303 (43%), Gaps = 56/303 (18%)

Query: 196 VICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA----- 250
           +  Y++++  L + G    V   +  M   G+ P+  +YN++I   C   N  DA     
Sbjct: 180 LFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMK 239

Query: 251 -----------------------KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIIN 287
                                  K +  +AL++  +           C P+ ++Y ++IN
Sbjct: 240 KVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEG------CEPNTVTYSTLIN 293

Query: 288 SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
            LC    V++A +L  +M   GI+P     +  I   C MG  +DA +LFV ++++GC P
Sbjct: 294 GLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEP 353

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLT 407
           +  +Y  LI+       ++ A+ L+  M   GV P+                        
Sbjct: 354 NVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNT----------------------V 391

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            +N L++ L ++ R++ A+ +   + R G  PN+VTY  MI G CI G  +KA  ++ +M
Sbjct: 392 TYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNM 451

Query: 468 EEK 470
            ++
Sbjct: 452 LQR 454



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 176/422 (41%), Gaps = 51/422 (12%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++  A   FN M+     P   ++ +L+      +       L E +   G  P+  + N
Sbjct: 510 KMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYN 569

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +L++   K    S A      ++ +   P+VVT   +I GLC  G  + A  +F K +  
Sbjct: 570 VLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQ 629

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C    +PN++ Y+S+I  L ++G V +   LF +++  G+ PD   Y  +I  Y  +  
Sbjct: 630 GC----LPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGK 685

Query: 247 WEDA--------KGNTSAAL--------ELHEEFVNGNGELGVICHPDVLSYCSI-INSL 289
            E A        K      L         L  E++  +  L  +  PDV+  CS    + 
Sbjct: 686 VEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAAL--PDVVPNCSFGYQTT 743

Query: 290 CKD-VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
            +D V V  AK   LD    G+   V V ++L+      GR  +A +L  S+ S+G  PD
Sbjct: 744 DQDAVSVMSAKLAELD---PGL--SVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPD 798

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTV 408
             +YN+L+ S  ++  V+ A+ ++  M + G                       E+ L  
Sbjct: 799 QEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGC----------------------EVHLNG 836

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +  L+  LC+  R + A   F+ +      P+ V   V+I GL  +G  +   + L  ME
Sbjct: 837 YKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIME 896

Query: 469 EK 470
            +
Sbjct: 897 TR 898


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 186/397 (46%), Gaps = 46/397 (11%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           ++  G  P+ V+ N L+N F K     D    L  +  +   P+VV+   L+ GLC   +
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLER 60

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
           + EA  L    ++   R    P+++ Y++++ G CK G V + R L  ++  RG+ PDA 
Sbjct: 61  WHEAEELVRDMISRGGRST--PDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDAL 118

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
           +Y  ++   C +    +A       +                C P ++++ ++I+  C++
Sbjct: 119 MYTKVVASLCKSARLGEALELLEEMIRAG-------------CCPTLITFNTLISGCCRE 165

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             ++ A  L   M + G+  DVV Y++L+DG C  GR+ +A +L   +++ GC PD  +Y
Sbjct: 166 KNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAY 225

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC----ILEAAELFRTLHN 399
           ++ +    K  KV +A  +  +M      P         D  C    I  A E+   + +
Sbjct: 226 SSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMAS 285

Query: 400 TKF-ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
           +    L++  ++ +VDGLCK  R + A  + + + R G  P+VVTY+ ++ GLC  G IE
Sbjct: 286 SDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIE 345

Query: 459 KAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEIT 495
                            +A+E + +MA    KP+ +T
Sbjct: 346 -----------------EAVEAVREMAMEGCKPNAVT 365



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 105/411 (25%), Positives = 185/411 (45%), Gaps = 35/411 (8%)

Query: 57  LSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           LS   K+G+VE +  L        ++P   M  +  ++ +L         + L E +   
Sbjct: 89  LSGYCKAGKVEESRELLKEVISRGLRPDALM--YTKVVASLCKSARLGEALELLEEMIRA 146

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  P  ++ N L++  C+   +  A   L ++       DVVT   L+ GLC  G+  EA
Sbjct: 147 GCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEA 206

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L  +  A  C P+V+     Y+S + GLCK G V     +   M+     P+   YN+
Sbjct: 207 EQLLERMKASGCAPDVVA----YSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNT 262

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           ++   C         G    ALE+ E+  + +G     C  +V+ Y ++++ LCK     
Sbjct: 263 ILDGLC-------KSGKIDTALEMMEQMASSDG-----CGLNVVGYSTVVDGLCKLGRTQ 310

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A+ +   M   G  PDVV YSSL++G C  G+I++A +    +  EGC P+  +Y +L+
Sbjct: 311 EARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLV 370

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           +      ++ EA  +  EM S                            ++ +N L+ GL
Sbjct: 371 HGLCSCGRLAEAERMVEEMSSG-----------------GGGGHHCPPSVSTYNALIGGL 413

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           CK+ R+  A + F+++   G +P+ V+Y+ ++ GL   G   +A  +L ++
Sbjct: 414 CKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQAEMILSEV 464



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 159/343 (46%), Gaps = 43/343 (12%)

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
           R    PN + + ++++G  K G       L   M  R I P+   YN L+   C    W 
Sbjct: 3   RTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWH 62

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
           +A+       EL  + ++  G       PD+++Y ++++  CK   V++++EL  ++ SR
Sbjct: 63  EAE-------ELVRDMISRGGR----STPDMVTYSTLLSGYCKAGKVEESRELLKEVISR 111

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G+ PD ++Y+ ++   C   R+ +A +L   +   GC P   ++NTLI+   + + +E A
Sbjct: 112 GLRPDALMYTKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMA 171

Query: 369 LSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDG 415
            SL  +M + GV+ D                + EA +L   +  +    D+  ++  V G
Sbjct: 172 DSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYG 231

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------ 469
           LCKS ++  A ++ +++     +PNVVTY  ++ GLC  G I+ A +++  M        
Sbjct: 232 LCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGL 291

Query: 470 -------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                        K+    +A  ++  MA+   +PD +T S L
Sbjct: 292 NVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSL 334



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 102/227 (44%), Gaps = 32/227 (14%)

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M   G  P+ V +++L++G+   GR  D  +L  ++ +    P+  SYN L+    K+E+
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLER 60

Query: 365 VEEALSLYGEMISMGVR--PD---------NSC----ILEAAELFRTLHNTKFELDLTVF 409
             EA  L  +MIS G R  PD           C    + E+ EL + + +     D  ++
Sbjct: 61  WHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMY 120

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
             +V  LCKS RL  A EL +++ R G  P ++T+  +I G C E  +E A         
Sbjct: 121 TKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADS------- 173

Query: 470 KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                     LL KMA   VK D +T + L + L K     E   LL
Sbjct: 174 ----------LLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLL 210


>gi|302785562|ref|XP_002974552.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
 gi|300157447|gb|EFJ24072.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
          Length = 495

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 99/358 (27%), Positives = 168/358 (46%), Gaps = 39/358 (10%)

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
           LP+  +  I++   C       A   L  +  K+ +P    +  L+  LC  GK   A  
Sbjct: 69  LPNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYE 128

Query: 179 LFTKFVAFDCRPNVIP-NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
           L+ K ++ +C  + I  N++ Y     GLCK   +++   +F +M+   + P    YN L
Sbjct: 129 LY-KRLSDECSLDRISYNMLTY-----GLCKADQIDRALAVFGEMEENAVVPSLLTYNGL 182

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           +  YC A       G    A+ L EE + G     V+  PD+ SY ++I+  CK   +  
Sbjct: 183 LYGYCRA-------GRMEQAMTLLEEMIEGKKGSDVV--PDMYSYNTVISGFCKARQLPT 233

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A+ +   M   G  P+VV +++L+DG CL G++D+A  +F  +    C P   +Y  LI 
Sbjct: 234 ARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLIT 293

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
            +++  ++++A   + +M+  GV P                      ++  +  L+ GLC
Sbjct: 294 GHARALRIDKANDYFVDMLRRGVEP----------------------NVYTYTALIGGLC 331

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD-MEEKIREC 474
            + ++  A E+ K++   G EPNVVTYT +I  LC  G IE+A  L  D M  +  +C
Sbjct: 332 DANKVEDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERATKLFNDAMGSRTAKC 389



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 111/444 (25%), Positives = 191/444 (43%), Gaps = 56/444 (12%)

Query: 74  FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
            F+ M++ +  P + ++  +L  L         + L + + +  L P    +N+L++C C
Sbjct: 59  IFDDMLYKECLPNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLC 118

Query: 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
           K  G  DA   L + L    S D ++   L  GLC   +   A  +F +         V+
Sbjct: 119 KN-GKVDAAYELYKRLSDECSLDRISYNMLTYGLCKADQIDRALAVFGEME----ENAVV 173

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDM----KGRGIYPDAFVYNSLIRVYCCAVNWED 249
           P+++ Y  ++ G C+ G + +   L  +M    KG  + PD + YN++I  +C       
Sbjct: 174 PSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFC------K 227

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
           A+   +A   L     +G       C P+V+++ ++++ LC    +D+A  +F  M  R 
Sbjct: 228 ARQLPTARYVLRRMIKSG-------CSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERN 280

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
             P  V Y+ LI G+    RID A   FV +   G  P+  +Y  LI       KVE+AL
Sbjct: 281 CEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDAL 340

Query: 370 SLYGEMISMGVRPD-------------NSCILEAAELFRTL---HNTKFELDLTVFNCLV 413
            +   M S G  P+                I  A +LF         K + D   ++ +V
Sbjct: 341 EILKRMSSTGREPNVVTYTRVIGALCKGGQIERATKLFNDAMGSRTAKCKPDSYAYSTIV 400

Query: 414 DGLCKSWRLRSAWELFKKL--PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI 471
             LC+  +   A+E F ++   +   +P++  Y  M  GL          +L+ + E+  
Sbjct: 401 YWLCRQSKFLEAYEYFLRMVESKLVAKPHI--YKAMADGL----------ELVQETEKVE 448

Query: 472 RECLKA----IELLHKMAKRYVKP 491
           R CL+A    IEL  K A + + P
Sbjct: 449 RVCLEASAHGIELQQKDAPQPLNP 472



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 146/321 (45%), Gaps = 24/321 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERL----NTIGLLPDF 122
           +++ AL  F  M      P + ++N LL            + L E +        ++PD 
Sbjct: 156 QIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDM 215

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
            S N +++ FCK   +  A   L R+++   SP+VVT   L+ GLC+ GK  EA+ +F  
Sbjct: 216 YSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEY 275

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
            V  +C     P  + Y  +I G  +   ++K    F+DM  RG+ P+ + Y +LI   C
Sbjct: 276 MVERNCE----PTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLC 331

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
            A   ED       ALE+ +   +   E      P+V++Y  +I +LCK   +++A +LF
Sbjct: 332 DANKVED-------ALEILKRMSSTGRE------PNVVTYTRVIGALCKGGQIERATKLF 378

Query: 303 LD-MKSRGI--IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            D M SR     PD   YS+++   C   +  +A + F+ +     +     Y  + +  
Sbjct: 379 NDAMGSRTAKCKPDSYAYSTIVYWLCRQSKFLEAYEYFLRMVESKLVAKPHIYKAMADGL 438

Query: 360 SKIEKVEEALSLYGEMISMGV 380
             +++ E+   +  E  + G+
Sbjct: 439 ELVQETEKVERVCLEASAHGI 459



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 69/166 (41%), Gaps = 9/166 (5%)

Query: 66  VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
           + ++ A  +F  M+     P + ++ +L+G L       + + + +R+++ G  P+ V+ 
Sbjct: 299 LRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTY 358

Query: 126 NILMNCFCKMIGVSDAFV----ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             ++   CK   +  A      A+G    K   PD      ++  LC Q KF EA   F 
Sbjct: 359 TRVIGALCKGGQIERATKLFNDAMGSRTAKC-KPDSYAYSTIVYWLCRQSKFLEAYEYFL 417

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI 227
           + V       ++     Y ++ DGL       KV  + L+    GI
Sbjct: 418 RMV----ESKLVAKPHIYKAMADGLELVQETEKVERVCLEASAHGI 459


>gi|255555533|ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542184|gb|EEF43728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 775

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 119/430 (27%), Positives = 210/430 (48%), Gaps = 35/430 (8%)

Query: 56  YLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNT 115
           +L   +K+G+ +L++   FF  M+       + ++N ++G +  +   V    L  ++  
Sbjct: 223 FLYRLAKTGKGDLSNK--FFRDMVGAGIAQSVFTYNIMIGYMCKEGDMVTAKSLFHQMKQ 280

Query: 116 IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
           +GL PD V+ N L++ + K+  + ++F     +      PDV+T   LI   C   K+ +
Sbjct: 281 MGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFC---KYEQ 337

Query: 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
               F  F+       + PNV+ Y+++ID LCK+  + +     LDM+  G+ P+ F Y 
Sbjct: 338 MPKAF-HFLHEMKNSGLKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYT 396

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           SLI   C A       G  S AL+L +E       L V    +V++Y ++++ LCK+  +
Sbjct: 397 SLIDANCKA-------GYLSDALKLADEM------LQVQVGFNVVTYTTLLDGLCKEGRM 443

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
            +A++LF  M   G+ P++  Y++L+ G+    R+++A +L   I+ +   PD   Y T+
Sbjct: 444 MEAEDLFRAMIKAGVTPNLKTYTALVHGHIKNKRVENALELLKEIKEKKIKPDLLLYGTI 503

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSCI--------------LEAAELFRTLHNTK 401
           I       K+EE   +  EM + G+R  NS I              +EA  L + + +  
Sbjct: 504 IWGLCSQNKLEECEFVMSEMKACGIRA-NSVIYTIRMDAYFKTGKTVEALNLLQEMCDLG 562

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP-NVVTYTVMICGLCIEGGIEKA 460
            E+ +  F  L+DGLCK   +  A + F ++  +  +P NV   T +I GLC    IE A
Sbjct: 563 VEVTIVTFCVLIDGLCKKGLVEEAIDYFARMADFNLQPNNVAVCTALIDGLCKNNYIEAA 622

Query: 461 YDLLPDMEEK 470
             L  +M++K
Sbjct: 623 KKLFDEMQDK 632



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 150/342 (43%), Gaps = 39/342 (11%)

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
           +P F   + L + F ++  + +A     R+ R    P   +    +  L   GK   ++ 
Sbjct: 179 VPGFGVFDALFSVFIELGMLEEAGQCFSRMTRFRVFPKARSCNAFLYRLAKTGKGDLSNK 238

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
            F   V       +  +V  Y  +I  +CK+G +   + LF  MK  G+ PD   YNSLI
Sbjct: 239 FFRDMVG----AGIAQSVFTYNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLI 294

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
             Y          G    +  L EE  +      V C PDV++Y ++IN  CK   + KA
Sbjct: 295 DGY-------GKLGLLDESFCLFEEMKD------VGCEPDVITYNALINCFCKYEQMPKA 341

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
                +MK+ G+ P+VV YS+LID  C    +  A K  + +   G  P+  +Y +LI++
Sbjct: 342 FHFLHEMKNSGLKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDA 401

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
             K   + +AL L  EM+ + V                        ++  +  L+DGLCK
Sbjct: 402 NCKAGYLSDALKLADEMLQVQV----------------------GFNVVTYTTLLDGLCK 439

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
             R+  A +LF+ + + G  PN+ TYT ++ G      +E A
Sbjct: 440 EGRMMEAEDLFRAMIKAGVTPNLKTYTALVHGHIKNKRVENA 481



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 155/378 (41%), Gaps = 68/378 (17%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++  A  F + M +    P + ++++L+ AL  +      I     +  +GL P+  +  
Sbjct: 337 QMPKAFHFLHEMKNSGLKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYT 396

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++  CK   +SDA      +L+     +VVT   L+ GLC +G+  EA  LF   +  
Sbjct: 397 SLIDANCKAGYLSDALKLADEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAEDLFRAMIKA 456

Query: 187 DCRPNV-------------------------------IPNVICYASIIDGLCKDGFVNKV 215
              PN+                                P+++ Y +II GLC    + + 
Sbjct: 457 GVTPNLKTYTALVHGHIKNKRVENALELLKEIKEKKIKPDLLLYGTIIWGLCSQNKLEEC 516

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
             +  +MK  GI  ++ +Y   +  Y          G T  AL L +E  +   E+ ++ 
Sbjct: 517 EFVMSEMKACGIRANSVIYTIRMDAYF-------KTGKTVEALNLLQEMCDLGVEVTIVT 569

Query: 276 -----------------------------HPDVLSYCS-IINSLCKDVLVDKAKELFLDM 305
                                         P+ ++ C+ +I+ LCK+  ++ AK+LF +M
Sbjct: 570 FCVLIDGLCKKGLVEEAIDYFARMADFNLQPNNVAVCTALIDGLCKNNYIEAAKKLFDEM 629

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
           + + ++PD + Y++LIDG        +A  +   +   G   D  +Y +L+   S+   V
Sbjct: 630 QDKNMVPDKIAYTALIDGNLKHKDFQEALNIRSRMSELGMELDLHAYTSLVWGLSQGNLV 689

Query: 366 EEALSLYGEMISMGVRPD 383
           ++A     EMI  G+ PD
Sbjct: 690 QQARMFLNEMIGKGIVPD 707



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 93/209 (44%), Gaps = 13/209 (6%)

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
           +C P    + ++ +   +  ++++A + F  M    + P     ++ +      G+ D +
Sbjct: 177 VCVPGFGVFDALFSVFIELGMLEEAGQCFSRMTRFRVFPKARSCNAFLYRLAKTGKGDLS 236

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCI-- 387
            K F  +   G      +YN +I    K   +  A SL+ +M  MG+ PD    NS I  
Sbjct: 237 NKFFRDMVGAGIAQSVFTYNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLIDG 296

Query: 388 -------LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
                   E+  LF  + +   E D+  +N L++  CK  ++  A+    ++   G +PN
Sbjct: 297 YGKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLKPN 356

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           VVTY+ +I  LC E  +++A   L DM  
Sbjct: 357 VVTYSTLIDALCKEHMLQQAIKFLLDMRR 385



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 140/351 (39%), Gaps = 45/351 (12%)

Query: 57  LSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           +  N K+G   L+DAL   + M+ +Q    + ++ +LL  L  +   +    L   +   
Sbjct: 399 IDANCKAGY--LSDALKLADEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAEDLFRAMIKA 456

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ P+  +   L++   K   V +A   L  I  K   PD++  G +I GLC Q K  E 
Sbjct: 457 GVTPNLKTYTALVHGHIKNKRVENALELLKEIKEKKIKPDLLLYGTIIWGLCSQNKLEEC 516

Query: 177 SGLFTKFVAFDCRPNVI-------------------------------PNVICYASIIDG 205
             + ++  A   R N +                                 ++ +  +IDG
Sbjct: 517 EFVMSEMKACGIRANSVIYTIRMDAYFKTGKTVEALNLLQEMCDLGVEVTIVTFCVLIDG 576

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
           LCK G V +    F  M    + P+     + +    C  N+        AA +L +E  
Sbjct: 577 LCKKGLVEEAIDYFARMADFNLQPNNVAVCTALIDGLCKNNY------IEAAKKLFDEMQ 630

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
           + N        PD ++Y ++I+   K     +A  +   M   G+  D+  Y+SL+ G  
Sbjct: 631 DKN------MVPDKIAYTALIDGNLKHKDFQEALNIRSRMSELGMELDLHAYTSLVWGLS 684

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
               +  AR     +  +G +PD      L+  Y ++  ++EA+ L+ E++
Sbjct: 685 QGNLVQQARMFLNEMIGKGIVPDEILCIRLLRKYYELGSIDEAIELHDELL 735


>gi|449480434|ref|XP_004155892.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Cucumis sativus]
          Length = 638

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 111/423 (26%), Positives = 192/423 (45%), Gaps = 39/423 (9%)

Query: 67  ELNDALCFFNYMIHMQPTP-FMP---SFNSLLGALAGKKYYVNFICLSER--LNTIGLLP 120
           +LN+      + + +   P F+P   S N L  AL   K      C+  +  L +    P
Sbjct: 135 QLNNVFLSLRFFLWLSSQPEFLPHPVSCNKLFDALLEAK-----ACVPAKSFLYSFEFSP 189

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           +  SL   + C C+   V +A      +    + P V T     +     G+      L+
Sbjct: 190 EPASLENYIRCVCEGGLVEEAVYTFDMLKEAGYRPYVETWNFAFQSCLKFGRTDLIWKLY 249

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
              +    + +V    + Y  +I   C D  V++   +       G+ P    +N LI  
Sbjct: 250 EGMMETGVQKDVDIETVGY--LIQAFCNDNKVSRAYEILRQSLEDGLTPCNDAFNKLISG 307

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
           +C        + N    LEL    +  N       +PD+ +Y  IIN  CK+ +  +A E
Sbjct: 308 FC-------KEKNHHRVLELVHTMIVKNR------NPDIFTYQEIINGFCKNWMTLQAFE 354

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           +F  +K RG  PD+V+Y++LI G+C MG+++DA KL+  +  +G +P+  SYNTLI  + 
Sbjct: 355 VFNALKDRGYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTLIYGFC 414

Query: 361 KIEKVEEALSLYGEMISMGVRPD----NSCIL---------EAAELFRTLHNTKFELDLT 407
           KI  ++EA+ LY +M+  G +      N+ IL         EA + FR +       D+ 
Sbjct: 415 KIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAYDFFREMPCKNIVCDVI 474

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            +N L+ G C+  ++  + +L K+L   G +P+  +Y  +I  LC  G +++A ++  DM
Sbjct: 475 TYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLIQKLCQLGSVQEAKEMWNDM 534

Query: 468 EEK 470
             +
Sbjct: 535 HNR 537



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 133/267 (49%), Gaps = 19/267 (7%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL P   + N L++ FCK          +  ++ K  +PD+ T   +I G C      +A
Sbjct: 293 GLTPCNDAFNKLISGFCKEKNHHRVLELVHTMIVKNRNPDIFTYQEIINGFCKNWMTLQA 352

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
              F  F A   R    P+++ Y ++I G CK G +     L+ +M  +G  P+ + YN+
Sbjct: 353 ---FEVFNALKDR-GYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNT 408

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVN-GNGELGVICHPDVLSYCSIINSLCKDVLV 295
           LI  +C         GN   A++L+++ ++ G  E  + C+       ++I  LC     
Sbjct: 409 LIYGFC-------KIGNLDEAMKLYKKMLDSGYKETTLSCN-------TLILGLCLHGRT 454

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           D+A + F +M  + I+ DV+ Y++LI G+C  G++  +  L   ++++G  P TSSY  L
Sbjct: 455 DEAYDFFREMPCKNIVCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHL 514

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRP 382
           I    ++  V+EA  ++ +M + G++P
Sbjct: 515 IQKLCQLGSVQEAKEMWNDMHNRGLQP 541



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 133/300 (44%), Gaps = 17/300 (5%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           TP   +FN L+     +K +   + L   +      PD  +   ++N FCK      AF 
Sbjct: 295 TPCNDAFNKLISGFCKEKNHHRVLELVHTMIVKNRNPDIFTYQEIINGFCKNWMTLQAFE 354

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
               +  + ++PD+V    LI G C  G+  +AS L+ + +        +PN   Y ++I
Sbjct: 355 VFNALKDRGYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMID----KGFLPNEYSYNTLI 410

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
            G CK G +++   L+  M   G        N+LI   C         G T  A +   E
Sbjct: 411 YGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCL-------HGRTDEAYDFFRE 463

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
               N    ++C  DV++Y ++I   C++  V ++ +L  +++++G+ P    Y+ LI  
Sbjct: 464 MPCKN----IVC--DVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLIQK 517

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            C +G + +A++++  + + G  P   + + +I+   +   V E +     M+   ++P 
Sbjct: 518 LCQLGSVQEAKEMWNDMHNRGLQPMVCTRDHIISGLCEQGYVVEGMEWLITMLKSNLKPQ 577



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 110/248 (44%), Gaps = 17/248 (6%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  PD V    L++ FCKM  + DA      ++ K F P+  +   LI G C  G   EA
Sbjct: 363 GYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTLIYGFCKIGNLDEA 422

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L+ K +    +   +    C  ++I GLC  G  ++    F +M  + I  D   YN+
Sbjct: 423 MKLYKKMLDSGYKETTLS---C-NTLILGLCLHGRTDEAYDFFREMPCKNIVCDVITYNT 478

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI+ +C        +G    + +L +E +   G       P   SY  +I  LC+   V 
Sbjct: 479 LIQGFC-------REGKVLQSTDLLKE-LQAKG-----LQPSTSSYAHLIQKLCQLGSVQ 525

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +AKE++ DM +RG+ P V     +I G C  G + +  +  +++      P   ++  LI
Sbjct: 526 EAKEMWNDMHNRGLQPMVCTRDHIISGLCEQGYVVEGMEWLITMLKSNLKPQKETFYKLI 585

Query: 357 NSYSKIEK 364
            S  +I K
Sbjct: 586 QSLIQIGK 593


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 178/397 (44%), Gaps = 56/397 (14%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V+ N L++   K    SDA   L  +  K     +VT   +++GLC +G+  EA G 
Sbjct: 349 PDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGR 408

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
                       + P+VI Y ++ID  CK   V K  VL  +M   G+  D F  N+L+ 
Sbjct: 409 LKMMT----EEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLY 464

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C    +E+A           EE +    + G +  PD +SY +++ +  K+   + A 
Sbjct: 465 NLCKEKRYEEA-----------EELLRSPPQRGFV--PDEVSYGTVMAAYFKENKPEPAL 511

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            L+ +M  R + P +  Y++LI G C +G++ +A      +  +G +PD ++YN +I++Y
Sbjct: 512 YLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAY 571

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            K   +E+A   + +M+    +PD                      +   N L++GLC  
Sbjct: 572 CKEGDLEKAFQFHNKMLENYFKPD----------------------VVTCNTLMNGLCLH 609

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIE 479
            +L  A +LF+     G + +V+TY  +I  LC +G ++ A     DME           
Sbjct: 610 GKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFFADME----------- 658

Query: 480 LLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                  R ++PD  T +++   L++     E  N+L
Sbjct: 659 ------ARGLQPDAFTYNVVLSALSEAGRSEEAQNML 689



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 116/458 (25%), Positives = 198/458 (43%), Gaps = 51/458 (11%)

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLS--ERLNTIGLLPDFVSLNILMNCF 132
           F    H++P+  + + N++L ALA          L     L  + L P+  + N+L++  
Sbjct: 163 FRRRGHVRPS--LQAANAVLSALARSPSTSPQASLDVFRSLIALRLHPNHYTFNLLVHTH 220

Query: 133 CKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNV 192
           C    ++DA   L  +     SPDVVT   L++  C +G   EA  L  +      +  +
Sbjct: 221 CSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLARMK----KEGI 276

Query: 193 IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252
            P    Y +++    + G++ +   +   M   G  PD + YN L    C A       G
Sbjct: 277 APTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQA-------G 329

Query: 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
               A +L +E      E   I  PDV++Y +++++  K      A  L  +M+ +G+  
Sbjct: 330 KVDEAFKLKDEM-----EHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKS 384

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
            +V ++ ++ G C  G++++A      +  EG  PD  +YNTLI++Y K   V +A  L 
Sbjct: 385 SLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLM 444

Query: 373 GEMISMGVRPD---------NSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            EM+  G++ D         N C      EA EL R+     F  D   +  ++    K 
Sbjct: 445 DEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKE 504

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD---------LLPDMEE- 469
            +   A  L+ ++ +    P++ TY  +I GLC  G + +A D         L+PD    
Sbjct: 505 NKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTY 564

Query: 470 --------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                   K  +  KA +  +KM + Y KPD +T + L
Sbjct: 565 NIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTL 602



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 133/267 (49%), Gaps = 17/267 (6%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL PD ++ N L++ +CK   V+ AFV +  ++R     D  TL  L+  LC + ++ EA
Sbjct: 416 GLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEA 475

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L         +   +P+ + Y +++    K+        L+ +M  R + P  + YN+
Sbjct: 476 EELLRS----PPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNT 531

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI+  C         G  + A++   E +      G++  PD  +Y  II++ CK+  ++
Sbjct: 532 LIKGLCTI-------GKLTEAIDKLNELMKK----GLV--PDDTTYNIIIHAYCKEGDLE 578

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           KA +    M      PDVV  ++L++G CL G+++ A KLF S   +G   D  +YNTLI
Sbjct: 579 KAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLI 638

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD 383
            +  K   V+ AL  + +M + G++PD
Sbjct: 639 QALCKDGDVDTALHFFADMEARGLQPD 665



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 132/279 (47%), Gaps = 32/279 (11%)

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
           HP+  ++  ++++ C    +  A      M+  G+ PDVV Y++L+  +C  G + +AR 
Sbjct: 207 HPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEART 266

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--NSCILEAA-- 391
           L   ++ EG  P  ++YNTL+++Y+++  +++A ++   M + G  PD     +L A   
Sbjct: 267 LLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLC 326

Query: 392 ------ELFR----TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
                 E F+      H +    D+  +N LVD   K  R   A  L +++   G + ++
Sbjct: 327 QAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSL 386

Query: 442 VTYTVMICGLCIEGGIEKA------------------YDLLPDMEEKIRECLKAIELLHK 483
           VT+ +++ GLC EG +E+A                  Y+ L D   K R   KA  L+ +
Sbjct: 387 VTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDE 446

Query: 484 MAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
           M +  +K D  T++ L   L K++   E   LL S   R
Sbjct: 447 MVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQR 485



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 54/116 (46%)

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           L++S+ +   V  +L     ++S   R  ++    + ++FR+L   +   +   FN LV 
Sbjct: 159 LLHSFRRRGHVRPSLQAANAVLSALARSPSTSPQASLDVFRSLIALRLHPNHYTFNLLVH 218

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
             C    L  A      +  +G  P+VVTY  ++   C +G + +A  LL  M+++
Sbjct: 219 THCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLARMKKE 274


>gi|15233142|ref|NP_191058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210358|sp|Q9SV46.1|PP282_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g54980, mitochondrial; Flags: Precursor
 gi|4678295|emb|CAB41086.1| putative protein [Arabidopsis thaliana]
 gi|28393168|gb|AAO42016.1| unknown protein [Arabidopsis thaliana]
 gi|332645801|gb|AEE79322.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 851

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 119/455 (26%), Positives = 212/455 (46%), Gaps = 63/455 (13%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLL-GALAGKKYYVNFICLSERLNTIGLLP 120
           K+GE+E   AL F+  M  +  TP +   ++++ G L G+K+        E   T GL  
Sbjct: 386 KNGEME--KALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFET-GLAN 442

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
            FV  N +++  CK     +A   L ++  +   P+VV+   ++ G C Q     A  +F
Sbjct: 443 VFVC-NTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVF 501

Query: 181 TKFVAFDCRPN-------------------------------VIPNVICYASIIDGLCKD 209
           +  +    +PN                               +  N + Y +II+GLCK 
Sbjct: 502 SNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKV 561

Query: 210 GFVNKVRVLFLDM-KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           G  +K R L  +M + + +      YNS+I  +         +G   +A+  +EE   GN
Sbjct: 562 GQTSKARELLANMIEEKRLCVSCMSYNSIIDGFF-------KEGEMDSAVAAYEEMC-GN 613

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
           G       P+V++Y S++N LCK+  +D+A E+  +MK++G+  D+  Y +LIDG+C   
Sbjct: 614 G-----ISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRS 668

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----- 383
            ++ A  LF  +  EG  P    YN+LI+ +  +  +  AL LY +M+  G+R D     
Sbjct: 669 NMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYT 728

Query: 384 --------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
                   +  ++ A+EL+  +       D  ++  +V+GL K  +     ++F+++ + 
Sbjct: 729 TLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKN 788

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
              PNV+ Y  +I G   EG +++A+ L  +M +K
Sbjct: 789 NVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDK 823



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 112/485 (23%), Positives = 193/485 (39%), Gaps = 81/485 (16%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N+ S + + + A+   N M+ +   PF P  N  L AL  +        L  R+  IG+ 
Sbjct: 171 NAYSKDRQTDHAVDIVNQMLELDVIPFFPYVNRTLSALVQRNSLTEAKELYSRMVAIGVD 230

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
            D V+  +LM    +    ++A   L R + +   PD +     ++  C       A+ L
Sbjct: 231 GDNVTTQLLMRASLREEKPAEALEVLSRAIERGAEPDSLLYSLAVQACCKTLDLAMANSL 290

Query: 180 FTKFVAFD-CRPN-------------------------------VIPNVICYASIIDGLC 207
             +      C P+                               +  NV+   S+I G C
Sbjct: 291 LREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITGHC 350

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL------- 260
           K+  +    VLF  M+  G  P++  ++ LI        W    G    ALE        
Sbjct: 351 KNNDLVSALVLFDKMEKEGPSPNSVTFSVLIE-------WFRKNGEMEKALEFYKKMEVL 403

Query: 261 ---------------------HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
                                HEE +    E       +V    +I++ LCK    D+A 
Sbjct: 404 GLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFETGLANVFVCNTILSWLCKQGKTDEAT 463

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           EL   M+SRGI P+VV Y++++ G+C    +D AR +F +I  +G  P+  +Y+ LI+  
Sbjct: 464 ELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGC 523

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSC----------ILEAAELFRTLHNTKFELDLTV- 408
            +    + AL +   M S  +  +             + + ++    L N   E  L V 
Sbjct: 524 FRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVS 583

Query: 409 ---FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
              +N ++DG  K   + SA   ++++   G  PNV+TYT ++ GLC    +++A ++  
Sbjct: 584 CMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRD 643

Query: 466 DMEEK 470
           +M+ K
Sbjct: 644 EMKNK 648



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 131/268 (48%), Gaps = 25/268 (9%)

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA----SG 178
           +S N +++ F K   +  A  A   +     SP+V+T   L+ GLC   +  +A      
Sbjct: 585 MSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDE 644

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           +  K V  D     IP    Y ++IDG CK   +     LF ++   G+ P   +YNSLI
Sbjct: 645 MKNKGVKLD-----IP---AYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLI 696

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
             +          GN  AAL+L+++ +      G+ C  D+ +Y ++I+ L KD  +  A
Sbjct: 697 SGFRNL-------GNMVAALDLYKKMLKD----GLRC--DLGTYTTLIDGLLKDGNLILA 743

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
            EL+ +M++ G++PD ++Y+ +++G    G+     K+F  ++     P+   YN +I  
Sbjct: 744 SELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAG 803

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSC 386
           + +   ++EA  L+ EM+  G+ PD + 
Sbjct: 804 HYREGNLDEAFRLHDEMLDKGILPDGAT 831



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 180/411 (43%), Gaps = 50/411 (12%)

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           + N L+N + K      A   + ++L     P    +   +  L  +   TEA  L+++ 
Sbjct: 165 AFNYLLNAYSKDRQTDHAVDIVNQMLELDVIPFFPYVNRTLSALVQRNSLTEAKELYSRM 224

Query: 184 VAFDCR-PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
           VA      NV   ++  AS    L ++     + VL   ++ RG  PD+ +Y+  ++  C
Sbjct: 225 VAIGVDGDNVTTQLLMRAS----LREEKPAEALEVLSRAIE-RGAEPDSLLYSLAVQACC 279

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
             ++   A    S   E+ E+          +C P   +Y S+I +  K   +D A  L 
Sbjct: 280 KTLDLAMA---NSLLREMKEK---------KLCVPSQETYTSVILASVKQGNMDDAIRLK 327

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
            +M S GI  +VV  +SLI G+C    +  A  LF  +E EG  P++ +++ LI  + K 
Sbjct: 328 DEMLSDGISMNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKN 387

Query: 363 EKVEEALSLYGEMISMGVRPD----NSCIL-----EAAELFRTLHNTKFELDLT---VFN 410
            ++E+AL  Y +M  +G+ P     ++ I      +  E    L +  FE  L    V N
Sbjct: 388 GEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFETGLANVFVCN 447

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            ++  LCK  +   A EL  K+   G  PNVV+Y  ++ G C +  ++ A  +  ++ EK
Sbjct: 448 TILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEK 507

Query: 471 IRECLKAIELLHKMAKRYVKPDEITVSILEE--LLNKDE-NCHECMNLLPS 518
                             +KP+  T SIL +    N DE N  E +N + S
Sbjct: 508 -----------------GLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTS 541



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 121/269 (44%), Gaps = 17/269 (6%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           S+NS++     +    + +   E +   G+ P+ ++   LMN  CK   +  A      +
Sbjct: 586 SYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEM 645

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
             K    D+   G LI G C +     AS LF++ +       + P+   Y S+I G   
Sbjct: 646 KNKGVKLDIPAYGALIDGFCKRSNMESASALFSELL----EEGLNPSQPIYNSLISGFRN 701

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
            G +     L+  M   G+  D   Y +LI             GN   A EL+ E     
Sbjct: 702 LGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLL-------KDGNLILASELYTEM---- 750

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
             +G++  PD + Y  I+N L K     K  ++F +MK   + P+V++Y+++I G+   G
Sbjct: 751 QAVGLV--PDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREG 808

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLIN 357
            +D+A +L   +  +G +PD ++++ L++
Sbjct: 809 NLDEAFRLHDEMLDKGILPDGATFDILVS 837



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 110/259 (42%), Gaps = 17/259 (6%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E E++ A+  +  M     +P + ++ SL+  L         + + + +   G+  D  +
Sbjct: 597 EGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPA 656

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
              L++ FCK   +  A      +L +  +P       LI G    G    A  L+ K +
Sbjct: 657 YGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKML 716

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
               R ++      Y ++IDGL KDG +     L+ +M+  G+ PD  +Y  +       
Sbjct: 717 KDGLRCDLG----TYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVI------- 765

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
           VN    KG     +++ EE    N        P+VL Y ++I    ++  +D+A  L  +
Sbjct: 766 VNGLSKKGQFVKVVKMFEEMKKNN------VTPNVLIYNAVIAGHYREGNLDEAFRLHDE 819

Query: 305 MKSRGIIPDVVVYSSLIDG 323
           M  +GI+PD   +  L+ G
Sbjct: 820 MLDKGILPDGATFDILVSG 838



 Score = 45.8 bits (107), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 13/149 (8%)

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP------------ 382
           KL  S +S G   ++ ++N L+N+YSK  + + A+ +  +M+ + V P            
Sbjct: 149 KLVDSAKSFGFEVNSRAFNYLLNAYSKDRQTDHAVDIVNQMLELDVIPFFPYVNRTLSAL 208

Query: 383 -DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
              + + EA EL+  +     + D      L+    +  +   A E+  +    G EP+ 
Sbjct: 209 VQRNSLTEAKELYSRMVAIGVDGDNVTTQLLMRASLREEKPAEALEVLSRAIERGAEPDS 268

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           + Y++ +   C    +  A  LL +M+EK
Sbjct: 269 LLYSLAVQACCKTLDLAMANSLLREMKEK 297



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 93/245 (37%), Gaps = 39/245 (15%)

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353
           LVD AK    ++ SR        ++ L++ Y    + D A  +   +     IP     N
Sbjct: 150 LVDSAKSFGFEVNSRA-------FNYLLNAYSKDRQTDHAVDIVNQMLELDVIPFFPYVN 202

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI-------------LEAAELFRTLHNT 400
             +++  +   + EA  LY  M+++GV  DN                 EA E+       
Sbjct: 203 RTLSALVQRNSLTEAKELYSRMVAIGVDGDNVTTQLLMRASLREEKPAEALEVLSRAIER 262

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP-EPNVVTYTVMICGLCIEGGIEK 459
             E D  +++  V   CK+  L  A  L +++       P+  TYT +I     +G ++ 
Sbjct: 263 GAEPDSLLYSLAVQACCKTLDLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMDD 322

Query: 460 AYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEE 501
           A  L  +M                    K  + + A+ L  KM K    P+ +T S+L E
Sbjct: 323 AIRLKDEMLSDGISMNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIE 382

Query: 502 LLNKD 506
              K+
Sbjct: 383 WFRKN 387


>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 807

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 116/431 (26%), Positives = 201/431 (46%), Gaps = 49/431 (11%)

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
           LP   + +IL++C C+   +  AF   G +LR+    DV+ +  L+RGLC   +  EA  
Sbjct: 100 LPTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVD 159

Query: 179 -LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN-KVRVLFLDMKGRGIYPDAFVYNS 236
            LF +     C    +P+ I Y++++  +C DG     + +L + +K  G  P   V   
Sbjct: 160 VLFHRMPELGC----VPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVV--- 212

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
              VY   V+    +G    A +L  E      + GV   P+V++Y S+I++LCK   VD
Sbjct: 213 ---VYSTVVHGLFKEGKVGEACDLFHEMT----QQGV--PPNVVTYNSVIHALCKARAVD 263

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           KA+ +   M   G+ PD V Y++LI GY  +G+   A ++F  + S G IP+T + +T +
Sbjct: 264 KAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFV 323

Query: 357 NSYSKIEKVEEALSLYGEMISMGVR-------------PDNSCILEAAELFRTLHNTKFE 403
               K  ++EEA   +  M++ G +                 C+++ + LF  +      
Sbjct: 324 AFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIV 383

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            +  VFN LV+G  K   +R A  +F+ + + G  P+V+TY  +I   C  G ++ A D 
Sbjct: 384 PNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDK 443

Query: 464 LPDMEEK-------IRECL-----------KAIELLHKMAKRYVKPDEITVSILEELLNK 505
              M +K       + +CL           KA EL++++  + + P  ++ + L   L K
Sbjct: 444 FNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCK 503

Query: 506 DENCHECMNLL 516
           +    E   + 
Sbjct: 504 EGRVFEAQRIF 514



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 127/545 (23%), Positives = 231/545 (42%), Gaps = 104/545 (19%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A      M+     P   ++N+L+   +    +   + + + + + G++P+ V+ + 
Sbjct: 262 VDKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCST 321

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
            +   CK   + +A      +L K    ++++   L+ G    G   + S LF   V   
Sbjct: 322 FVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMV--- 378

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            R  ++PN   +  +++G  K G V +   +F DM+ RG+ PD   Y ++I  +C   + 
Sbjct: 379 -RDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSM 437

Query: 248 EDA----------------------------KGNTSAALELHEEFVNGNGELGVICHPDV 279
           +DA                             G+   A EL  E  N    LG    P +
Sbjct: 438 DDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKG--LG----PCI 491

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           LS+ S+IN LCK+  V +A+ +F  +   G   DV +++SLIDGYCL+G++ +A ++  +
Sbjct: 492 LSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDA 551

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---------------- 383
           + S G  PD  +Y TL+N   K  ++++ L L+ E++  GV+P                 
Sbjct: 552 MVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGR 611

Query: 384 --------------------------------NSCILEAAELFRTLHNTKFELDLTVFNC 411
                                           N+C  EA  +F+ L     + D+ + N 
Sbjct: 612 TAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNI 671

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK- 470
           ++  + K+ R   A  LF  +P YG  P V TYT+M+  L  EG +E+A  +   M +  
Sbjct: 672 MISKMFKARRREEAEGLFASIPDYGLVPTVQTYTIMMENLIKEGSVEEAEGVFSVMLKSG 731

Query: 471 -----------IRECLKAIELLH------KMAKRYVKPDEITVSILEELLNKDENCHECM 513
                      +R  L+  E++       ++  + +  +  T S+L  L +      E +
Sbjct: 732 LSPTSHFINVIVRTLLEKGEIVKAGIYMCRVDGKSILFEASTASMLLSLFSCKGKHREHL 791

Query: 514 NLLPS 518
           NLLP+
Sbjct: 792 NLLPA 796



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 104/252 (41%), Gaps = 34/252 (13%)

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           R  +P V  YS LID  C   R+D A   F  +  +G   D    ++L+      ++ +E
Sbjct: 97  RVALPTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDE 156

Query: 368 ALS-LYGEMISMGVRPDN---SCILE----------AAELFRTL--HNTKFELDLTVFNC 411
           A+  L+  M  +G  PD    S +L+          A ++ R           ++ V++ 
Sbjct: 157 AVDVLFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVVYST 216

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM---- 467
           +V GL K  ++  A +LF ++ + G  PNVVTY  +I  LC    ++KA  +L  M    
Sbjct: 217 VVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNG 276

Query: 468 --------------EEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECM 513
                            + +  +A+ +  +M  R V P+ +T S     L K     E  
Sbjct: 277 VQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAR 336

Query: 514 NLLPSFLSRNQE 525
               S L++  +
Sbjct: 337 EFFDSMLAKGHK 348


>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like, partial [Cucumis sativus]
          Length = 602

 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 126/440 (28%), Positives = 195/440 (44%), Gaps = 52/440 (11%)

Query: 54  LKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERL 113
            ++L    +SG +EL   + F   M+       + S+ +++  L  K   V    L + L
Sbjct: 157 FEFLLALKRSGNMEL--CVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDEL 214

Query: 114 NTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF 173
              G  P  ++ N L+N + ++  V      L  + + V   +V T   LI       K 
Sbjct: 215 VCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKI 274

Query: 174 TEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233
            EA  LF + +    +  + P+V  Y SII+  CK G + +  VLF +M  R + P+A+ 
Sbjct: 275 EEAEKLFDEML----KKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYT 330

Query: 234 YNSLIRVYCCA---------VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS--- 281
           Y +LI   C A         VN   +KG       +    ++G  + G+I     L    
Sbjct: 331 YGALINGACKAGEMKAAEMMVNDMQSKG-VDVNRVIFNTLMDGYCKKGMIDEALRLQNIM 389

Query: 282 ----------YCSIINS-LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
                      C+II S  C+    ++AK L L M+ RG+ P+VV +S LID YC     
Sbjct: 390 QQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNF 449

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEA 390
            +AR+LF  +E +G  P   +YN  I  Y K  K+EEA  L  EM   G+ PD       
Sbjct: 450 AEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDT------ 503

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
                             +  L+DG   S  +  A ELF ++P+ G   NVVTYTV+I G
Sbjct: 504 ----------------YTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISG 547

Query: 451 LCIEGGIEKAYDLLPDMEEK 470
           L  +G  ++A+ L  +M ++
Sbjct: 548 LSKDGRADEAFKLYDEMNKE 567



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 136/304 (44%), Gaps = 29/304 (9%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ PD      ++N  CK   +  AFV    +  +   P+  T G LI G C  G+   A
Sbjct: 288 GIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAA 347

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             +     +      V  N + + +++DG CK G +++   L   M+ +G   DAF  N 
Sbjct: 348 EMMVNDMQS----KGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNI 403

Query: 237 LIRVYCCAVNWEDAKG---------------NTSAALELH---EEFVNGNGELGVICH-- 276
           +   +C +   E+AK                + S  ++++   + F        V+    
Sbjct: 404 IASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKG 463

Query: 277 --PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
             P V++Y + I   CK   +++A +L  +M+ RG++PD   Y+SLIDG    G +D A 
Sbjct: 464 KAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRAL 523

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
           +LF  +   G   +  +Y  +I+  SK  + +EA  LY EM   G+ PD+      + L 
Sbjct: 524 ELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIY---SSLI 580

Query: 395 RTLH 398
            +LH
Sbjct: 581 ASLH 584



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 137/301 (45%), Gaps = 29/301 (9%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLL------GALAGKKYYVNFICLSERLNTIGLLPD 121
           +  A   F+ M   +  P   ++ +L+      G +   +  VN       + + G+  +
Sbjct: 309 MKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVN------DMQSKGVDVN 362

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V  N LM+ +CK   + +A      + +K F  D  T   +  G C   +  EA  L  
Sbjct: 363 RVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLL- 421

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
             +  + R  V PNV+ ++ +ID  CK+    + R LF  M+ +G  P    YN+ I  Y
Sbjct: 422 --LTMEER-GVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERY 478

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C        KG    A +L    +N   E G++  PD  +Y S+I+       VD+A EL
Sbjct: 479 C-------KKGKMEEAYKL----INEMQERGLM--PDTYTYTSLIDGERASGNVDRALEL 525

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F +M   G+  +VV Y+ +I G    GR D+A KL+  +  EG +PD   Y++LI S  K
Sbjct: 526 FNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHK 585

Query: 362 I 362
           +
Sbjct: 586 V 586



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 104/423 (24%), Positives = 181/423 (42%), Gaps = 61/423 (14%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDG-LCKDGFVN 213
           PD+     L   L    KF E   +  KF+  D   N+  NV    S I G   +   V 
Sbjct: 62  PDLPAHLILFSRLYRARKFAEMKNVL-KFIVND--GNLWSNVERIVSSIGGEFNEPSIVE 118

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG---------------NTSAAL 258
           K    F DM  R +Y D  +++S + V+    ++   KG                 S  +
Sbjct: 119 K----FCDMLFR-VYMDNRMFDSSLEVF----DYARKKGFEIDERSCFEFLLALKRSGNM 169

Query: 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS 318
           EL  EF+    + G+     V S+ ++++ LCK   V +AK L  ++  +G  P V+ Y+
Sbjct: 170 ELCVEFLRQMVDSGIEIR--VCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYN 227

Query: 319 SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
           +L++GY  +  +    ++   +E      + ++Y  LI  YS+  K+EEA  L+ EM+  
Sbjct: 228 TLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKK 287

Query: 379 GVRPD----NSCI---------LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
           G+ PD     S I           A  LF  +   +   +   +  L++G CK+  +++A
Sbjct: 288 GIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAA 347

Query: 426 WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC----------- 474
             +   +   G + N V +  ++ G C +G I++A  L   M++K  E            
Sbjct: 348 EMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASG 407

Query: 475 -------LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEES 527
                   +A  LL  M +R V P+ ++ SIL ++  K++N  E   L      + +  S
Sbjct: 408 FCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPS 467

Query: 528 KLT 530
            +T
Sbjct: 468 VVT 470


>gi|449433055|ref|XP_004134313.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Cucumis sativus]
          Length = 602

 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 111/423 (26%), Positives = 192/423 (45%), Gaps = 39/423 (9%)

Query: 67  ELNDALCFFNYMIHMQPTP-FMP---SFNSLLGALAGKKYYVNFICLSER--LNTIGLLP 120
           +LN+      + + +   P F+P   S N L  AL   K      C+  +  L +    P
Sbjct: 99  QLNNVFLSLRFFLWLSSQPEFLPHPVSCNKLFDALLEAK-----ACVPAKSFLYSFEFSP 153

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           +  SL   + C C+   V +A      +    + P V T     +     G+      L+
Sbjct: 154 EPASLENYIRCVCEGGLVEEAVYTFDMLKEAGYRPYVETWNFAFQSCLKFGRTDLIWKLY 213

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
              +    + +V    + Y  +I   C D  V++   +       G+ P    +N LI  
Sbjct: 214 EGMMETGVQKDVDIETVGY--LIQAFCNDNKVSRAYEILRQSLEDGLTPCNDAFNKLISG 271

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
           +C        + N    LEL    +  N       +PD+ +Y  IIN  CK+ +  +A E
Sbjct: 272 FC-------KEKNHHRVLELVHTMIVKNR------NPDIFTYQEIINGFCKNWMTLQAFE 318

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           +F  +K RG  PD+V+Y++LI G+C MG+++DA KL+  +  +G +P+  SYNTLI  + 
Sbjct: 319 VFNALKDRGYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTLIYGFC 378

Query: 361 KIEKVEEALSLYGEMISMGVRPD----NSCIL---------EAAELFRTLHNTKFELDLT 407
           KI  ++EA+ LY +M+  G +      N+ IL         EA + FR +       D+ 
Sbjct: 379 KIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAYDFFREMPCKNIVCDVI 438

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            +N L+ G C+  ++  + +L K+L   G +P+  +Y  +I  LC  G +++A ++  DM
Sbjct: 439 TYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLIQKLCQLGSVQEAKEMWNDM 498

Query: 468 EEK 470
             +
Sbjct: 499 HNR 501



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 133/267 (49%), Gaps = 19/267 (7%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL P   + N L++ FCK          +  ++ K  +PD+ T   +I G C      +A
Sbjct: 257 GLTPCNDAFNKLISGFCKEKNHHRVLELVHTMIVKNRNPDIFTYQEIINGFCKNWMTLQA 316

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
              F  F A   R    P+++ Y ++I G CK G +     L+ +M  +G  P+ + YN+
Sbjct: 317 ---FEVFNALKDR-GYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNT 372

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVN-GNGELGVICHPDVLSYCSIINSLCKDVLV 295
           LI  +C         GN   A++L+++ ++ G  E  + C+       ++I  LC     
Sbjct: 373 LIYGFC-------KIGNLDEAMKLYKKMLDSGYKETTLSCN-------TLILGLCLHGRT 418

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           D+A + F +M  + I+ DV+ Y++LI G+C  G++  +  L   ++++G  P TSSY  L
Sbjct: 419 DEAYDFFREMPCKNIVCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHL 478

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRP 382
           I    ++  V+EA  ++ +M + G++P
Sbjct: 479 IQKLCQLGSVQEAKEMWNDMHNRGLQP 505



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 133/300 (44%), Gaps = 17/300 (5%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           TP   +FN L+     +K +   + L   +      PD  +   ++N FCK      AF 
Sbjct: 259 TPCNDAFNKLISGFCKEKNHHRVLELVHTMIVKNRNPDIFTYQEIINGFCKNWMTLQAFE 318

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
               +  + ++PD+V    LI G C  G+  +AS L+ + +        +PN   Y ++I
Sbjct: 319 VFNALKDRGYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMID----KGFLPNEYSYNTLI 374

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
            G CK G +++   L+  M   G        N+LI   C         G T  A +   E
Sbjct: 375 YGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCL-------HGRTDEAYDFFRE 427

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
               N    ++C  DV++Y ++I   C++  V ++ +L  +++++G+ P    Y+ LI  
Sbjct: 428 MPCKN----IVC--DVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLIQK 481

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            C +G + +A++++  + + G  P   + + +I+   +   V E +     M+   ++P 
Sbjct: 482 LCQLGSVQEAKEMWNDMHNRGLQPMVCTRDHIISGLCEQGYVVEGMEWLITMLKSNLKPQ 541



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 110/248 (44%), Gaps = 17/248 (6%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  PD V    L++ FCKM  + DA      ++ K F P+  +   LI G C  G   EA
Sbjct: 327 GYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTLIYGFCKIGNLDEA 386

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L+ K +    +   +    C  ++I GLC  G  ++    F +M  + I  D   YN+
Sbjct: 387 MKLYKKMLDSGYKETTLS---C-NTLILGLCLHGRTDEAYDFFREMPCKNIVCDVITYNT 442

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI+ +C        +G    + +L +E +   G       P   SY  +I  LC+   V 
Sbjct: 443 LIQGFC-------REGKVLQSTDLLKE-LQAKG-----LQPSTSSYAHLIQKLCQLGSVQ 489

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +AKE++ DM +RG+ P V     +I G C  G + +  +  +++      P   ++  LI
Sbjct: 490 EAKEMWNDMHNRGLQPMVCTRDHIISGLCEQGYVVEGMEWLITMLKSNLKPQKETFYKLI 549

Query: 357 NSYSKIEK 364
            S  +I K
Sbjct: 550 QSLIQIGK 557


>gi|356533985|ref|XP_003535538.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like, partial [Glycine max]
          Length = 594

 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 108/383 (28%), Positives = 177/383 (46%), Gaps = 40/383 (10%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N+L+  L  +      I + + + ++ L+PD V+ N L++   K  G ++ F  L  +
Sbjct: 139 TYNTLVKGLCDEGKIDEAIRVRDEMESLKLIPDVVTYNTLIDGCFKWRGSTEGFRLLEEM 198

Query: 149 L-RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207
             R    P+ VT   +++    +GK  EAS    K V       V P+   Y ++I+G C
Sbjct: 199 KSRGGVEPNAVTHNIMVKWFGKEGKINEASDAVVKMV----ESGVSPDCFTYNTMINGFC 254

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
           K G + +   +  +M  +G+ PD    N+++   C     E+A   T  A +        
Sbjct: 255 KAGKLGEAFRMMDEMARKGLKPDICTLNTMLHTLCMEKKPEEAYELTVKARKR------- 307

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
               G I   D ++Y ++I    K    DKA +L+ +MK RGI+P VV Y+ LI G CL 
Sbjct: 308 ----GYIL--DEVTYGTLIMGYFKGKQEDKALKLWEEMKKRGIVPSVVSYNPLIRGLCLS 361

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
           G+ D A      +  +G +PD  S N +I+ Y     V++A   + +M+    +P     
Sbjct: 362 GKTDQAVDKLNELLEKGLVPDEVSCNIIIHGYCWEGMVDKAFQFHNKMVGNSFKP----- 416

Query: 388 LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
                            D+   N L+ GLC+   L  A++LF          +VVTY  M
Sbjct: 417 -----------------DIFTRNILLRGLCRVDMLEKAFKLFNSWISKQNSVDVVTYNTM 459

Query: 448 ICGLCIEGGIEKAYDLLPDMEEK 470
           I  LC EG +++A+DL+ DME K
Sbjct: 460 ISYLCKEGRLDEAFDLMTDMEVK 482



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 161/360 (44%), Gaps = 42/360 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ PD  + N ++N FCK   + +AF  +  + RK   PD+ TL  ++  LCM+ K  EA
Sbjct: 238 GVSPDCFTYNTMINGFCKAGKLGEAFRMMDEMARKGLKPDICTLNTMLHTLCMEKKPEEA 297

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L  K      +   I + + Y ++I G  K    +K   L+ +MK RGI P    YN 
Sbjct: 298 YELTVKAR----KRGYILDEVTYGTLIMGYFKGKQEDKALKLWEEMKKRGIVPSVVSYNP 353

Query: 237 LIRVYCCAVNWEDAKGNTSAALE----------------------LHEEFVNGNGELGVI 274
           LIR  C +   + A    +  LE                      + + F   N  +G  
Sbjct: 354 LIRGLCLSGKTDQAVDKLNELLEKGLVPDEVSCNIIIHGYCWEGMVDKAFQFHNKMVGNS 413

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
             PD+ +   ++  LC+  +++KA +LF    S+    DVV Y+++I   C  GR+D+A 
Sbjct: 414 FKPDIFTRNILLRGLCRVDMLEKAFKLFNSWISKQNSVDVVTYNTMISYLCKEGRLDEAF 473

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
            L   +E +   PD  +YN ++ + +   + EEA                S + E  +  
Sbjct: 474 DLMTDMEVKKFEPDQYTYNAIVRALTHAGRTEEAEKFM------------SKLSETGQAV 521

Query: 395 RTLHNTKFELDLT---VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
           +T H+T  ELD +   +++  +  LC   + + A +LF++  + G   N  TY  ++ G 
Sbjct: 522 KT-HDTSQELDASSDIMYSQQISDLCTQGKYKEAMKLFQESEQKGVSLNKYTYIKLMDGF 580



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 170/372 (45%), Gaps = 59/372 (15%)

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK-DGFV 212
           S DV T   L++GLC +GK  EA  +  +  +      +IP+V+ Y ++IDG  K  G  
Sbjct: 134 SIDVWTYNTLVKGLCDEGKIDEAIRVRDEMESL----KLIPDVVTYNTLIDGCFKWRGST 189

Query: 213 NKVRVLFLDMKGRG-IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGEL 271
              R+L  +MK RG + P+A  +N +++       W   +G  + A +   + V    E 
Sbjct: 190 EGFRLL-EEMKSRGGVEPNAVTHNIMVK-------WFGKEGKINEASDAVVKMV----ES 237

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
           GV   PD  +Y ++IN  CK   + +A  +  +M  +G+ PD+   ++++   C+  + +
Sbjct: 238 GV--SPDCFTYNTMINGFCKAGKLGEAFRMMDEMARKGLKPDICTLNTMLHTLCMEKKPE 295

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAA 391
           +A +L V     G I D  +Y TLI  Y K ++ ++AL L+ EM   G+ P         
Sbjct: 296 EAYELTVKARKRGYILDEVTYGTLIMGYFKGKQEDKALKLWEEMKKRGIVPS-------- 347

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
                         +  +N L+ GLC S +   A +   +L   G  P+ V+  ++I G 
Sbjct: 348 --------------VVSYNPLIRGLCLSGKTDQAVDKLNELLEKGLVPDEVSCNIIIHGY 393

Query: 452 CIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHE 511
           C EG ++KA+                 +  +KM     KPD  T +IL   L + +   +
Sbjct: 394 CWEGMVDKAF-----------------QFHNKMVGNSFKPDIFTRNILLRGLCRVDMLEK 436

Query: 512 CMNLLPSFLSRN 523
              L  S++S+ 
Sbjct: 437 AFKLFNSWISKQ 448



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 140/316 (44%), Gaps = 68/316 (21%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLS-------ERLNTI---GL 118
           + AL  +  M      P + S+N L+  L          CLS       ++LN +   GL
Sbjct: 330 DKALKLWEEMKKRGIVPSVVSYNPLIRGL----------CLSGKTDQAVDKLNELLEKGL 379

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
           +PD VS NI+++ +C    V  AF    +++   F PD+ T   L+RGLC      +A  
Sbjct: 380 VPDEVSCNIIIHGYCWEGMVDKAFQFHNKMVGNSFKPDIFTRNILLRGLCRVDMLEKAFK 439

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           LF  +++   + N + +V+ Y ++I  LCK+G +++   L  DM+ +   PD + YN+++
Sbjct: 440 LFNSWIS---KQNSV-DVVTYNTMISYLCKEGRLDEAFDLMTDMEVKKFEPDQYTYNAIV 495

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG--VICHPDVLSYCSIINSLCKDVLVD 296
           R    A   E+A           E+F++   E G  V  H                   D
Sbjct: 496 RALTHAGRTEEA-----------EKFMSKLSETGQAVKTH-------------------D 525

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            ++EL  D  S       ++YS  I   C  G+  +A KLF   E +G   +  +Y  L+
Sbjct: 526 TSQEL--DASSD------IMYSQQISDLCTQGKYKEAMKLFQESEQKGVSLNKYTYIKLM 577

Query: 357 NSYSK----IEKVEEA 368
           + + K    I KV+ A
Sbjct: 578 DGFLKRRKSISKVDHA 593


>gi|255566084|ref|XP_002524030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536757|gb|EEF38398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1016

 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 116/430 (26%), Positives = 198/430 (46%), Gaps = 57/430 (13%)

Query: 105 NFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLI 164
           N I   + L  + +  D V+ N ++  FC+   V+ AF  L  +++K    D +T   L+
Sbjct: 60  NLILALDLLRNVDVEVDTVTYNTVIWGFCQHGLVNQAFGFLSIMVKKDTCFDTITCNILV 119

Query: 165 RGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224
           +G C  G       +    V+         +VI + ++IDG CK G ++    L   M+ 
Sbjct: 120 KGFCRIGLAKYGERIMDNLVS----GGTCKDVIGFNTLIDGYCKAGEMSLALDLVERMRK 175

Query: 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE-------FVNGNGEL----GV 273
            G+  D   YN+LI  +C    ++ AK   S   E+ E        F N +  +     +
Sbjct: 176 EGLLSDIVSYNTLINGFCKRGEYDKAK---SLLHEISESRGVKDSVFFNIDDRIKKDDNL 232

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
               D+++Y +II++ CK   +++A+ L+ +M   G +PDVV YSS+++G C  GR+ +A
Sbjct: 233 NLEADLITYTTIISTYCKQHGLEEARALYEEMIINGFLPDVVTYSSIVNGLCKDGRLSEA 292

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAEL 393
           ++L   ++  G  P+  +Y TLI+S  K     EA +   +++  G+             
Sbjct: 293 QELLREMKKMGVDPNHVAYTTLIDSLFKAGSAWEAFACQSQLVVRGMT------------ 340

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
                     LDL +   LVDGL KS + + A ++F+ L +    PN +TYT +I G C 
Sbjct: 341 ----------LDLVMCTTLVDGLFKSSKPKEAEDMFRALSKLNLIPNSITYTALIDGYCK 390

Query: 454 EGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECM 513
            G +E+   LL +MEEK                 ++ P+ IT S +     K     E +
Sbjct: 391 VGDMERVESLLQEMEEK-----------------HINPNVITYSSIINGYTKKGILDEAI 433

Query: 514 NLLPSFLSRN 523
           N++   L +N
Sbjct: 434 NVMKKMLDQN 443



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 127/483 (26%), Positives = 217/483 (44%), Gaps = 81/483 (16%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKM----------------IGVSDA-FVALGRILRK 151
           L ER+   GLL D VS N L+N FCK                  GV D+ F  +   ++K
Sbjct: 169 LVERMRKEGLLSDIVSYNTLINGFCKRGEYDKAKSLLHEISESRGVKDSVFFNIDDRIKK 228

Query: 152 ----VFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207
                   D++T   +I   C Q    EA  L+ + +        +P+V+ Y+SI++GLC
Sbjct: 229 DDNLNLEADLITYTTIISTYCKQHGLEEARALYEEMII----NGFLPDVVTYSSIVNGLC 284

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI-RVYCCAVNWED--------AKGNT---- 254
           KDG +++ + L  +MK  G+ P+   Y +LI  ++     WE          +G T    
Sbjct: 285 KDGRLSEAQELLREMKKMGVDPNHVAYTTLIDSLFKAGSAWEAFACQSQLVVRGMTLDLV 344

Query: 255 -----------SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                      S+  +  E+      +L +I  P+ ++Y ++I+  CK   +++ + L  
Sbjct: 345 MCTTLVDGLFKSSKPKEAEDMFRALSKLNLI--PNSITYTALIDGYCKVGDMERVESLLQ 402

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
           +M+ + I P+V+ YSS+I+GY   G +D+A  +   +  +  IP+   Y  LI+ Y K  
Sbjct: 403 EMEEKHINPNVITYSSIINGYTKKGILDEAINVMKKMLDQNIIPNAYVYAILIDGYCKAG 462

Query: 364 KVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDLTVFN 410
           K E A  LY EM   G++ +N               + EA EL + + +    LD   + 
Sbjct: 463 KQEIATDLYNEMKLSGLKVNNVLFDVLVNNLKRGKRMDEAEELLKDVTSRGLLLDHVNYT 522

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC--------------IEGG 456
            L+DG  K+ +  +A  + +++       +VVTY V+I GL               IE G
Sbjct: 523 SLMDGFFKAGKESAALNMVEEMTEKSIPFDVVTYNVLINGLLEHGKYEAKSVYSGMIEMG 582

Query: 457 I---EKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECM 513
           +   +  Y+++     K  E   A+EL ++M    + P  IT + L   L++     + M
Sbjct: 583 LAPNQATYNIMIKAYCKQGELDNALELWNEMKSHKIMPSSITCNTLVVGLSEAGEIEKAM 642

Query: 514 NLL 516
           N+L
Sbjct: 643 NVL 645



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 175/396 (44%), Gaps = 66/396 (16%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           L+ + L+P+ ++   L++ +CK+  +      L  +  K  +P+V+T   +I G   +G 
Sbjct: 369 LSKLNLIPNSITYTALIDGYCKVGDMERVESLLQEMEEKHINPNVITYSSIINGYTKKGI 428

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDG---------------------- 210
             EA  +  K +      N+IPN   YA +IDG CK G                      
Sbjct: 429 LDEAINVMKKML----DQNIIPNAYVYAILIDGYCKAGKQEIATDLYNEMKLSGLKVNNV 484

Query: 211 ----FVNKVRV---------LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
                VN ++          L  D+  RG+  D   Y SL+  +  A       G  SAA
Sbjct: 485 LFDVLVNNLKRGKRMDEAEELLKDVTSRGLLLDHVNYTSLMDGFFKA-------GKESAA 537

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
           L + EE    +         DV++Y  +IN L +    + AK ++  M   G+ P+   Y
Sbjct: 538 LNMVEEMTEKSIPF------DVVTYNVLINGLLEHGKYE-AKSVYSGMIEMGLAPNQATY 590

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           + +I  YC  G +D+A +L+  ++S   +P + + NTL+   S+  ++E+A+++  EM  
Sbjct: 591 NIMIKAYCKQGELDNALELWNEMKSHKIMPSSITCNTLVVGLSEAGEIEKAMNVLNEMSV 650

Query: 378 MGVRPD---NSCILEAA----------ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
           MG+ P+   +  +L A+          ++   L +   +++   +N L+   C+    + 
Sbjct: 651 MGIHPNLVIHRVLLNASSKSGKANAVLQMHEQLVDMGLKINQEAYNNLIVVFCRLRMTKK 710

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
           A  + K + R G   + VTY  +I G C    ++KA
Sbjct: 711 ATSVLKYMIRDGFVADTVTYNALIRGYCESSHVKKA 746



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 159/393 (40%), Gaps = 84/393 (21%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GLL D V+   LM+ F K    S A   +  +  K    DVVT   LI GL   GK+ EA
Sbjct: 513 GLLLDHVNYTSLMDGFFKAGKESAALNMVEEMTEKSIPFDVVTYNVLINGLLEHGKY-EA 571

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             +++  +       + PN   Y  +I   CK G ++    L+ +MK   I P +   N+
Sbjct: 572 KSVYSGMIEM----GLAPNQATYNIMIKAYCKQGELDNALELWNEMKSHKIMPSSITCNT 627

Query: 237 LIR----------------------------VYCCAVNWEDAKGNTSAALELHEEFVNG- 267
           L+                             ++   +N     G  +A L++HE+ V+  
Sbjct: 628 LVVGLSEAGEIEKAMNVLNEMSVMGIHPNLVIHRVLLNASSKSGKANAVLQMHEQLVDMG 687

Query: 268 --------NGELGVICH--------------------PDVLSYCSIINSLCKDVLVDKAK 299
                   N  + V C                      D ++Y ++I   C+   V KA 
Sbjct: 688 LKINQEAYNNLIVVFCRLRMTKKATSVLKYMIRDGFVADTVTYNALIRGYCESSHVKKAL 747

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
             +  M + G+ P++V Y+ L+ G    G + +  +LF  ++  G  PD S+Y+TLI+ Y
Sbjct: 748 ATYTQMLNEGVSPNIVTYNLLLGGLLGAGLMAERDELFDKMKENGLNPDASTYDTLISGY 807

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            KI   +E++ LY EM++ G  P  S                       +N L+    K 
Sbjct: 808 GKIGNKKESIRLYCEMVAQGFVPKTS----------------------TYNVLISDFAKV 845

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
            ++  A EL  ++   G  P+  TY ++ICG C
Sbjct: 846 GKMDQARELLNEMQVRGVPPSSSTYDILICGWC 878



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 129/301 (42%), Gaps = 44/301 (14%)

Query: 116 IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
           +GL P+  + NI++  +CK   + +A      +      P  +T   L+ GL   G+  +
Sbjct: 581 MGLAPNQATYNIMIKAYCKQGELDNALELWNEMKSHKIMPSSITCNTLVVGLSEAGEIEK 640

Query: 176 ASGLFTKFVAFDCRPNVIPNVI-------------------------------CYASIID 204
           A  +  +       PN++ + +                                Y ++I 
Sbjct: 641 AMNVLNEMSVMGIHPNLVIHRVLLNASSKSGKANAVLQMHEQLVDMGLKINQEAYNNLIV 700

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
             C+     K   +   M   G   D   YN+LIR YC          +   AL  + + 
Sbjct: 701 VFCRLRMTKKATSVLKYMIRDGFVADTVTYNALIRGYC-------ESSHVKKALATYTQM 753

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           +N     GV   P++++Y  ++  L    L+ +  ELF  MK  G+ PD   Y +LI GY
Sbjct: 754 LNE----GV--SPNIVTYNLLLGGLLGAGLMAERDELFDKMKENGLNPDASTYDTLISGY 807

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
             +G   ++ +L+  + ++G +P TS+YN LI+ ++K+ K+++A  L  EM   GV P +
Sbjct: 808 GKIGNKKESIRLYCEMVAQGFVPKTSTYNVLISDFAKVGKMDQARELLNEMQVRGVPPSS 867

Query: 385 S 385
           S
Sbjct: 868 S 868



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 149/329 (45%), Gaps = 31/329 (9%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           S++GE+E   A+   N M  M   P +     LL A +        + + E+L  +GL  
Sbjct: 633 SEAGEIE--KAMNVLNEMSVMGIHPNLVIHRVLLNASSKSGKANAVLQMHEQLVDMGLKI 690

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           +  + N L+  FC++     A   L  ++R  F  D VT   LIRG C      +A   +
Sbjct: 691 NQEAYNNLIVVFCRLRMTKKATSVLKYMIRDGFVADTVTYNALIRGYCESSHVKKALATY 750

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
           T+ +       V PN++ Y  ++ GL   G + +   LF  MK  G+ PDA  Y++LI  
Sbjct: 751 TQML----NEGVSPNIVTYNLLLGGLLGAGLMAERDELFDKMKENGLNPDASTYDTLISG 806

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
           Y          GN   ++ L+ E V      G +  P   +Y  +I+   K   +D+A+E
Sbjct: 807 Y-------GKIGNKKESIRLYCEMV----AQGFV--PKTSTYNVLISDFAKVGKMDQARE 853

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGR---ID---------DARKLFVSIESEGCIPD 348
           L  +M+ RG+ P    Y  LI G+C + +   +D         DA+ L   +  +G +P 
Sbjct: 854 LLNEMQVRGVPPSSSTYDILICGWCNLSKHPDLDRTLKKIYRTDAKNLITEMNDKGFVPC 913

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMIS 377
            S+   + +++++  K+ +A  L  E+ S
Sbjct: 914 KSTIACISSTFARPGKMLDAEKLLKEIFS 942



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 94/206 (45%), Gaps = 16/206 (7%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P +L +  +I       LV +  +++ +M    + P+V  ++ L+  +C MG +  A  L
Sbjct: 8   PTLLLWNQLIYHFNAFGLVSQVCDIYTEMLCSAVPPNVYTHNVLVHAWCKMGNLILALDL 67

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM---------ISMGVRPDNSCI 387
             +++ E    DT +YNT+I  + +   V +A      M         I+  +     C 
Sbjct: 68  LRNVDVE---VDTVTYNTVIWGFCQHGLVNQAFGFLSIMVKKDTCFDTITCNILVKGFCR 124

Query: 388 LEAAELFRTLHNTKFE----LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
           +  A+    + +         D+  FN L+DG CK+  +  A +L +++ + G   ++V+
Sbjct: 125 IGLAKYGERIMDNLVSGGTCKDVIGFNTLIDGYCKAGEMSLALDLVERMRKEGLLSDIVS 184

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEE 469
           Y  +I G C  G  +KA  LL ++ E
Sbjct: 185 YNTLINGFCKRGEYDKAKSLLHEISE 210


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 117/429 (27%), Positives = 192/429 (44%), Gaps = 71/429 (16%)

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
            + NI++   C     + A      +LR++  P+ VT   +I G C +G+   A  +  +
Sbjct: 115 TTFNIMLRHLCSAGKPARAL----ELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMRE 170

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG-IYPDAFVYNSLIRVY 241
                 R  + PN   Y ++I G CK G V++   +F +M  +G + P+A +YN+LI  Y
Sbjct: 171 MRE---RGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGY 227

Query: 242 C------CAVNWEDAKGNTSAALEL-------HEEFVNGNG----EL-----GVICHPDV 279
           C       A+ + D       A+ +       H  F++G G    EL     G    PDV
Sbjct: 228 CDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDV 287

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
            +Y  +IN  CK+  V KA E+F +M  RG+   VV Y++LI      G++ +  KLF  
Sbjct: 288 FTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDE 347

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN 399
               G  PD   YN LINS+S    ++ A  + GEM    + PD+               
Sbjct: 348 AVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDD--------------- 392

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
                    +N L+ GLC   R+  A +L  ++   G +P++VTY  +I G  ++G ++ 
Sbjct: 393 -------VTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKD 445

Query: 460 AYDLLPDMEEK------------IRECLK------AIELLHKMAKRYVKPDEIT-VSILE 500
           A  +  +M  K            I+   K      A  ++ +M +  + PD+ T +S++E
Sbjct: 446 ALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIE 505

Query: 501 ELLNKDENC 509
            L  +DE  
Sbjct: 506 GLTTEDERA 514



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 161/343 (46%), Gaps = 41/343 (11%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ V  N L+  +C    +  A +   R++ +  +  V T   L+  L M G+ TEA  L
Sbjct: 215 PEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYEL 274

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             +         + P+V  Y  +I+G CK+G V K   +F +M  RG+      Y +LI 
Sbjct: 275 VEEMGG----KGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALI- 329

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            Y  +      KG      +L +E V           PD++ Y ++INS      +D+A 
Sbjct: 330 -YALS-----KKGQVQETDKLFDEAVRRG------IRPDLVLYNALINSHSTSGNIDRAF 377

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           E+  +M+ + I PD V Y++L+ G CL+GR+D+ARKL   +   G  PD  +YNTLI+ Y
Sbjct: 378 EIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGY 437

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
           S    V++AL +  EM++ G  P                       L  +N L+ GLCK+
Sbjct: 438 SMKGDVKDALRIRNEMMNKGFNP----------------------TLLTYNALIQGLCKN 475

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
            +   A  + K++   G  P+  TY  +I GL  E   E+A D
Sbjct: 476 GQGDDAENMVKEMVENGITPDDSTYISLIEGLTTED--ERAID 516



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 157/333 (47%), Gaps = 22/333 (6%)

Query: 67  ELNDALCFFNYMI---HMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV 123
            +++A+  F+ M+    ++P   M  +N+L+G    +      +   +R+   G+     
Sbjct: 196 RVDEAVKVFDEMLTKGEVKPEAVM--YNALIGGYCDQGKLDTALLYRDRMVERGVAMTVA 253

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           + N+L++        ++A+  +  +  K  +PDV T   LI G C +G   +A  +F   
Sbjct: 254 TYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENM 313

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
                R  V   V+ Y ++I  L K G V +   LF +   RGI PD  +YN+LI     
Sbjct: 314 ----SRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALI----- 364

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
             N     GN   A E+  E             PD ++Y +++  LC    VD+A++L  
Sbjct: 365 --NSHSTSGNIDRAFEIMGEMEKKR------IAPDDVTYNTLMRGLCLLGRVDEARKLID 416

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
           +M  RGI PD+V Y++LI GY + G + DA ++   + ++G  P   +YN LI    K  
Sbjct: 417 EMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNG 476

Query: 364 KVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
           + ++A ++  EM+  G+ PD+S  +   E   T
Sbjct: 477 QGDDAENMVKEMVENGITPDDSTYISLIEGLTT 509



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 96/233 (41%), Gaps = 17/233 (7%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N    E  +  AL  F  M        + ++ +L+ AL+ K        L +     G+ 
Sbjct: 295 NGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIR 354

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V  N L+N       +  AF  +G + +K  +PD VT   L+RGLC+ G+  EA  L
Sbjct: 355 PDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKL 414

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             +         + P+++ Y ++I G    G V     +  +M  +G  P    YN+LI+
Sbjct: 415 IDEM----TERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQ 470

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
             C     +DA+      +E      NG         PD  +Y S+I  L  +
Sbjct: 471 GLCKNGQGDDAENMVKEMVE------NG-------ITPDDSTYISLIEGLTTE 510



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 15/128 (11%)

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE----------AAELFRTLHNTKF 402
           N L+ + + +     +L LY  M S+ + P ++  L           A  LF  +   + 
Sbjct: 52  NLLLTASAAVRPHATSLRLYSRMKSLSL-PISTASLHPLLSALPSAPAFALFADMFRLRL 110

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
            L  T FN ++  LC + +   A EL +++PR    PN VTY  +I G C  G ++ A D
Sbjct: 111 PLCTTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALD 166

Query: 463 LLPDMEEK 470
           ++ +M E+
Sbjct: 167 IMREMRER 174


>gi|297734659|emb|CBI16710.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 197/436 (45%), Gaps = 43/436 (9%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           +DAL +FN MI     P + +FN+++ A   +   V    L + L  +G  P+ +  N L
Sbjct: 108 SDALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTL 167

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           MN + KM  +  A +    + +K  +PD +T   L+ G    G+  +   L         
Sbjct: 168 MNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVL-- 225

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
              ++P+   +   + GLC  G +++     +DM  +G+ P    +NS+I  Y  A   E
Sbjct: 226 --GLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQA-GLE 282

Query: 249 DAKGNTSAALELHEEF---------------VNGNGELGVICHPDVLSYCSIINSLCKDV 293
           D K   +  L +H                  +NG  +        ++     +N++   V
Sbjct: 283 D-KAFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTV 341

Query: 294 LVDK---------AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           L+DK         A+ L+ +M+ RGI PDVV +S+ IDG    G +++A  +F+ +  +G
Sbjct: 342 LLDKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKG 401

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAA 391
            IP+  +YN+LI  + K  K+ EAL L   M   G+ PD                +  A 
Sbjct: 402 LIPNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAI 461

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
            +F  +H T    D+  +N L++G CK++ + +A  L  ++   G  P++ TY + I G 
Sbjct: 462 NVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGF 521

Query: 452 CIEGGIEKAYDLLPDM 467
           C    + +A  +L ++
Sbjct: 522 CSSRRMNRAVLMLDEL 537



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 152/314 (48%), Gaps = 17/314 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            L++A+ F   M+    +P + +FNS++ A +            + +   GL P   + +
Sbjct: 246 RLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCS 305

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+        + +A   +G+++ K  S + +    L+     +G    A  L+ +    
Sbjct: 306 SLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEME-- 363

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             R  + P+V+ +++ IDGL K G V +   +FL+M  +G+ P+ F YNSLI  +C    
Sbjct: 364 --RRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKC-- 419

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G  + AL+L E+ +   G L     PD+ +   II  LCK   +  A  +F+DM 
Sbjct: 420 -----GKLNEALKL-EKVMRHRGLL-----PDIFTTNMIIGGLCKQGRMRSAINVFMDMH 468

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
             G+ PD++ Y++LI+GYC    + +A  L   + + G  PD ++YN  I+ +    ++ 
Sbjct: 469 QTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRMN 528

Query: 367 EALSLYGEMISMGV 380
            A+ +  E++S G+
Sbjct: 529 RAVLMLDELVSAGI 542



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/407 (22%), Positives = 165/407 (40%), Gaps = 65/407 (15%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           R+  +G+ P    + IL     ++    + +     ++R+   P   T   +I G C +G
Sbjct: 11  RMREVGVRPSASGVAILFKLLLRVGDYGNVWKLFKDVIRRGPQPCKYTFSGIILGFCRKG 70

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
                  L      F C PN       Y  +I+  C  G  +     F  M  RG  P  
Sbjct: 71  CIHLGESLLHLMPKFHCEPNAF----AYNIVINACCIRGRTSDALAWFNLMIERGCNPTV 126

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
             +N++I  +C        +GN   A +L +    G  E+G    P+ + Y +++N   K
Sbjct: 127 VTFNTVINAFC-------KEGNVVEARKLFD----GLKEMGF--SPNAIMYNTLMNGYVK 173

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY--------------------------- 324
              +D+A  L+ +M+ +GI PD + ++ L+ G+                           
Sbjct: 174 MREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSL 233

Query: 325 --------CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
                   C  GR+D+A +  + +  +G  P   ++N++I +YS+    ++A   Y  M+
Sbjct: 234 FDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMV 293

Query: 377 SMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLR 423
             G+ P              N  + EA EL   +      ++   F  L+D   K   + 
Sbjct: 294 HFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVV 353

Query: 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            A  L+ ++ R G  P+VV ++  I GL  +G +E+AY++  +M  K
Sbjct: 354 GAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRK 400



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 130/287 (45%), Gaps = 17/287 (5%)

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           +  M+H   TP   + +SLL  L+          L  ++   GL  + ++  +L++ F K
Sbjct: 289 YKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFK 348

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
              V  A    G + R+   PDVV     I GL  QG   EA  +F + +    R  +IP
Sbjct: 349 RGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEML----RKGLIP 404

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           N   Y S+I G CK G +N+   L   M+ RG+ PD F  N +I   C       A    
Sbjct: 405 NNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSA---I 461

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
           +  +++H+  ++          PD+++Y ++IN  CK   +  A  L   M + G  PD+
Sbjct: 462 NVFMDMHQTGLS----------PDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPDL 511

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
             Y+  I G+C   R++ A  +   + S G +  + +    +N+++K
Sbjct: 512 TTYNIRIHGFCSSRRMNRAVLMLDELVSAGILSFSFACPPTLNAHTK 558



 Score = 45.4 bits (106), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 7/133 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +LN+AL     M H    P + + N ++G L  +    + I +   ++  GL PD ++ N
Sbjct: 421 KLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYN 480

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV-- 184
            L+N +CK   + +A   + R+     +PD+ T    I G C   +   A  +  + V  
Sbjct: 481 TLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVSA 540

Query: 185 -----AFDCRPNV 192
                +F C P +
Sbjct: 541 GILSFSFACPPTL 553


>gi|413924821|gb|AFW64753.1| hypothetical protein ZEAMMB73_344298 [Zea mays]
          Length = 698

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 107/386 (27%), Positives = 170/386 (44%), Gaps = 40/386 (10%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + ++ +++  L  K        L   +   GL P+    N ++N  CK    S A   
Sbjct: 149 PTVVTYGAIIHWLGRKGDLTKVESLLGEMRARGLSPNVQIYNTVINALCKCRSASQASDM 208

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           L ++++  F+PDVVT   +I G C +G   EA  L  + +    R  + PN + Y  +I 
Sbjct: 209 LNQMVKSRFNPDVVTFNTMIAGFCREGDVREALKLLREAI----RRGLEPNQLSYTPLIH 264

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           G C  G       L ++M GRG  PD     +LI     +       G  + AL + E+ 
Sbjct: 265 GFCVRGEAMVASDLLVEMMGRGHTPDMITLGALIHGLVVS-------GQVNDALIVREKM 317

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
                E  V+  PD   Y  +I+ LCK  ++  AK L  +M  + + PD  +Y++LIDG+
Sbjct: 318 A----ERQVM--PDANIYNVLISGLCKKRMLSAAKNLLEEMLEQKVQPDKFIYTTLIDGF 371

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
               ++ DARK+F  +E + C PD  +YN +I  Y K   ++EA++    M   G  PD 
Sbjct: 372 VRSDKLSDARKIFEFMEEKAC-PDIVAYNVMIKGYCKFGMMKEAVTCMSSMRKAGCIPDE 430

Query: 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
                                   +  LVDG  K   + ++  L   + +   +PN+ TY
Sbjct: 431 ----------------------FTYTTLVDGYAKKGDISASLRLLCDMMKRRCKPNIFTY 468

Query: 445 TVMICGLCIEGGIEKAYDLLPDMEEK 470
             +ICG C  G    A DL   M+ +
Sbjct: 469 ASLICGYCNIGDTYSAEDLFAKMQSE 494



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 107/449 (23%), Positives = 190/449 (42%), Gaps = 67/449 (14%)

Query: 74  FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
             N M+  +  P + +FN+++     +      + L       GL P+ +S   L++ FC
Sbjct: 208 MLNQMVKSRFNPDVVTFNTMIAGFCREGDVREALKLLREAIRRGLEPNQLSYTPLIHGFC 267

Query: 134 KMIGVSDAFVA---LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
                 +A VA   L  ++ +  +PD++TLG LI GL + G+  +A  +  K        
Sbjct: 268 VR---GEAMVASDLLVEMMGRGHTPDMITLGALIHGLVVSGQVNDALIVREKMA----ER 320

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
            V+P+   Y  +I GLCK   ++  + L  +M  + + PD F+Y +LI  +  +    DA
Sbjct: 321 QVMPDANIYNVLISGLCKKRMLSAAKNLLEEMLEQKVQPDKFIYTTLIDGFVRSDKLSDA 380

Query: 251 KGNTSAALELHEE-----------FVNGNGELGVI--------------CHPDVLSYCSI 285
           +       E  EE            + G  + G++              C PD  +Y ++
Sbjct: 381 R----KIFEFMEEKACPDIVAYNVMIKGYCKFGMMKEAVTCMSSMRKAGCIPDEFTYTTL 436

Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
           ++   K   +  +  L  DM  R   P++  Y+SLI GYC +G    A  LF  ++SEG 
Sbjct: 437 VDGYAKKGDISASLRLLCDMMKRRCKPNIFTYASLICGYCNIGDTYSAEDLFAKMQSEGL 496

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL----------------- 388
            P+   Y  LI S  K +KV +A + +  M+     P+++ +                  
Sbjct: 497 FPNVVHYTVLIGSLFKKDKVIQAAAYFEHMLLNHCPPNDATVHYLVNGLVNCRHGMVNSN 556

Query: 389 -----EAAE------LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
                +A E      +FR L +   +  ++ +N ++  LC+   L  A +L  K+   G 
Sbjct: 557 RSDTKQAHEKSALLDVFRGLISDGLDPRISAYNAIIFSLCRHNMLGKAMDLKDKMSNKGC 616

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
            P+ +T+  ++ G    G   K    LP+
Sbjct: 617 LPDPITFLSLLYGFSSAGESGKWRSALPN 645



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 108/436 (24%), Positives = 179/436 (41%), Gaps = 47/436 (10%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G LPD    N L+    +      A    G +L +    D  +   ++RGLC++G+  E 
Sbjct: 41  GALPDAPDCNCLLRLLVERRRWERARGLYGEMLVREGGADDYSTCVMVRGLCLEGRVEEG 100

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
            GL        C    +P  + Y  +IDG C+ G + +  +L  +M+ +GI P    Y +
Sbjct: 101 RGLIEARWGEGC----VPGAVFYNVLIDGYCRRGDIGRGLLLLGEMETKGIIPTVVTYGA 156

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           +I       +W   KG+ +    L  E +   G       P+V  Y ++IN+LCK     
Sbjct: 157 II-------HWLGRKGDLTKVESLLGE-MRARG-----LSPNVQIYNTVINALCKCRSAS 203

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A ++   M      PDVV ++++I G+C  G + +A KL       G  P+  SY  LI
Sbjct: 204 QASDMLNQMVKSRFNPDVVTFNTMIAGFCREGDVREALKLLREAIRRGLEPNQLSYTPLI 263

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFE 403
           + +    +   A  L  EM+  G  PD             +  + +A  +   +   +  
Sbjct: 264 HGFCVRGEAMVASDLLVEMMGRGHTPDMITLGALIHGLVVSGQVNDALIVREKMAERQVM 323

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D  ++N L+ GLCK   L +A  L +++     +P+   YT +I G      +  A  +
Sbjct: 324 PDANIYNVLISGLCKKRMLSAAKNLLEEMLEQKVQPDKFIYTTLIDGFVRSDKLSDARKI 383

Query: 464 LPDMEEK-----------IRECLK------AIELLHKMAKRYVKPDEITVSILEELLNKD 506
              MEEK           I+   K      A+  +  M K    PDE T + L +   K 
Sbjct: 384 FEFMEEKACPDIVAYNVMIKGYCKFGMMKEAVTCMSSMRKAGCIPDEFTYTTLVDGYAKK 443

Query: 507 ENCHECMNLLPSFLSR 522
            +    + LL   + R
Sbjct: 444 GDISASLRLLCDMMKR 459



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 147/336 (43%), Gaps = 44/336 (13%)

Query: 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCS 284
            G  PDA   N L+R+      WE A+G       L+ E +   G        D  S C 
Sbjct: 40  HGALPDAPDCNCLLRLLVERRRWERARG-------LYGEMLVREG------GADDYSTCV 86

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           ++  LC +  V++ + L       G +P  V Y+ LIDGYC  G I     L   +E++G
Sbjct: 87  MVRGLCLEGRVEEGRGLIEARWGEGCVPGAVFYNVLIDGYCRRGDIGRGLLLLGEMETKG 146

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCI---------LEAA 391
            IP   +Y  +I+   +   + +  SL GEM + G+ P+    N+ I          +A+
Sbjct: 147 IIPTVVTYGAIIHWLGRKGDLTKVESLLGEMRARGLSPNVQIYNTVINALCKCRSASQAS 206

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
           ++   +  ++F  D+  FN ++ G C+   +R A +L ++  R G EPN ++YT +I G 
Sbjct: 207 DMLNQMVKSRFNPDVVTFNTMIAGFCREGDVREALKLLREAIRRGLEPNQLSYTPLIHGF 266

Query: 452 CIEGGIEKAYDLLPDMEEKIR--ECLKAIELLH----------------KMAKRYVKPDE 493
           C+ G    A DLL +M  +    + +    L+H                KMA+R V PD 
Sbjct: 267 CVRGEAMVASDLLVEMMGRGHTPDMITLGALIHGLVVSGQVNDALIVREKMAERQVMPDA 326

Query: 494 ITVSILEELLNKDENCHECMNLLPSFLSRNQEESKL 529
              ++L   L K        NLL   L +  +  K 
Sbjct: 327 NIYNVLISGLCKKRMLSAAKNLLEEMLEQKVQPDKF 362



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 140/343 (40%), Gaps = 49/343 (14%)

Query: 63  SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF 122
           SG+V  NDAL     M   Q  P    +N L+  L  K+       L E +    + PD 
Sbjct: 304 SGQV--NDALIVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLEEMLEQKVQPDK 361

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFS-------PDVVTLGCLIRGLCMQGKFTE 175
                L++ F +   +SDA        RK+F        PD+V    +I+G C  G   E
Sbjct: 362 FIYTTLIDGFVRSDKLSDA--------RKIFEFMEEKACPDIVAYNVMIKGYCKFGMMKE 413

Query: 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
           A    +      C    IP+   Y +++DG  K G ++    L  DM  R   P+ F Y 
Sbjct: 414 AVTCMSSMRKAGC----IPDEFTYTTLVDGYAKKGDISASLRLLCDMMKRRCKPNIFTYA 469

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           SLI  YC         G+T +A +L   F     E G+   P+V+ Y  +I SL K   V
Sbjct: 470 SLICGYCNI-------GDTYSAEDL---FAKMQSE-GLF--PNVVHYTVLIGSLFKKDKV 516

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGY--CLMGRIDDARK-------------LFVSI 340
            +A   F  M      P+      L++G   C  G ++  R              +F  +
Sbjct: 517 IQAAAYFEHMLLNHCPPNDATVHYLVNGLVNCRHGMVNSNRSDTKQAHEKSALLDVFRGL 576

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            S+G  P  S+YN +I S  +   + +A+ L  +M + G  PD
Sbjct: 577 ISDGLDPRISAYNAIIFSLCRHNMLGKAMDLKDKMSNKGCLPD 619



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 122/305 (40%), Gaps = 44/305 (14%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V+ N+++  +CK   + +A   +  + +    PD  T   L+ G   +G  + +  L
Sbjct: 393 PDIVAYNVMIKGYCKFGMMKEAVTCMSSMRKAGCIPDEFTYTTLVDGYAKKGDISASLRL 452

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI- 238
               +   C+PN+      YAS+I G C  G       LF  M+  G++P+   Y  LI 
Sbjct: 453 LCDMMKRRCKPNIFT----YASLICGYCNIGDTYSAEDLFAKMQSEGLFPNVVHYTVLIG 508

Query: 239 ------RVYCCAVNWE----------DA-----------------KGNTSAALELHEEFV 265
                 +V   A  +E          DA                   N S   + HE+  
Sbjct: 509 SLFKKDKVIQAAAYFEHMLLNHCPPNDATVHYLVNGLVNCRHGMVNSNRSDTKQAHEKSA 568

Query: 266 NGNGELGVICH---PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
             +   G+I     P + +Y +II SLC+  ++ KA +L   M ++G +PD + + SL+ 
Sbjct: 569 LLDVFRGLISDGLDPRISAYNAIIFSLCRHNMLGKAMDLKDKMSNKGCLPDPITFLSLLY 628

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY---SKIEKVEEALSLYGEMISMG 379
           G+   G     R    +   +      + Y  L N +   S + +V   L LY E     
Sbjct: 629 GFSSAGESGKWRSALPNEFQQDEFEIITKYMALFNQHVTSSVVGEVSRILQLYSEEFQFL 688

Query: 380 VRPDN 384
            +P+ 
Sbjct: 689 KQPEQ 693



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 85/219 (38%), Gaps = 31/219 (14%)

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI--SMGVRPDNSCIL-----------E 389
            G +PD    N L+    +  + E A  LYGEM+    G    ++C++           E
Sbjct: 40  HGALPDAPDCNCLLRLLVERRRWERARGLYGEMLVREGGADDYSTCVMVRGLCLEGRVEE 99

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
              L               +N L+DG C+   +     L  ++   G  P VVTY  +I 
Sbjct: 100 GRGLIEARWGEGCVPGAVFYNVLIDGYCRRGDIGRGLLLLGEMETKGIIPTVVTYGAIIH 159

Query: 450 GLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKP 491
            L  +G + K   LL +M                    K R   +A ++L++M K    P
Sbjct: 160 WLGRKGDLTKVESLLGEMRARGLSPNVQIYNTVINALCKCRSASQASDMLNQMVKSRFNP 219

Query: 492 DEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           D +T + +     ++ +  E + LL   + R  E ++L+
Sbjct: 220 DVVTFNTMIAGFCREGDVREALKLLREAIRRGLEPNQLS 258


>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Brachypodium distachyon]
          Length = 787

 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 119/494 (24%), Positives = 205/494 (41%), Gaps = 75/494 (15%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L DAL   + M     +P   ++N+LL A   K        L  R+   G+ P   + N 
Sbjct: 220 LADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNT 279

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF---- 183
           L++ + ++  +  A   +  +    F PD+ T   L  GLC  GK  EA  L  +     
Sbjct: 280 LVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLG 339

Query: 184 --------------VAFDCR--------------PNVIPNVICYASIIDGLCKDGFVNKV 215
                           F CR                V   ++ +  +I GLCKDG +   
Sbjct: 340 TLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGA 399

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
                 M   G+ PD   YN+LI  +C A       GN + A  L +E V    +L    
Sbjct: 400 LGCLNKMADDGLAPDVITYNTLIHAHCKA-------GNIAKAYTLMDEMVRRGLKL---- 448

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
             D  +  +++ +LCK+   ++A+ L      RG +PD V Y +++  Y      + A +
Sbjct: 449 --DTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALR 506

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC--------- 386
           L+  +  +   P  S+YNTLI   S++ +++EA+    E++  G+ PD++          
Sbjct: 507 LWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYC 566

Query: 387 ----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
               +  A +    +    F+ D+   N L++GLC + +L  A +LF+     G + +V+
Sbjct: 567 KEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVI 626

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEEL 502
           TY  +I  +C +G ++ A     DME                  R ++PD  T +++   
Sbjct: 627 TYNTLIQTMCKDGDVDTALHFFADME-----------------ARGLQPDAFTYNVVLSA 669

Query: 503 LNKDENCHECMNLL 516
           L++     E  N+L
Sbjct: 670 LSEAGRTEEAQNML 683



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 176/372 (47%), Gaps = 32/372 (8%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           ERL T  LLPD V+ N L +   K    SDA   L  +  K     +VT   +I+GLC  
Sbjct: 336 ERLGT--LLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKD 393

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G+   A G   K +A D    + P+VI Y ++I   CK G + K   L  +M  RG+  D
Sbjct: 394 GELEGALGCLNK-MADD---GLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLD 449

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
            F  N+++   C    +E+A+G            +    + G +  PD +SY +++ +  
Sbjct: 450 TFTLNTVLYNLCKEKRYEEAQG-----------LLQSPPQRGFM--PDEVSYGTVMAAYF 496

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K+   + A  L+ +M  + + P +  Y++LI G   MGR+ +A      +  +G +PD +
Sbjct: 497 KEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDT 556

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTL 397
           +YN +I++Y K   +E A   + +M+    +PD             N  + +A +LF + 
Sbjct: 557 TYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESW 616

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                ++D+  +N L+  +CK   + +A   F  +   G +P+  TY V++  L   G  
Sbjct: 617 VEKGKKVDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRT 676

Query: 458 EKAYDLLPDMEE 469
           E+A ++L  + E
Sbjct: 677 EEAQNMLHKLAE 688



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 169/379 (44%), Gaps = 57/379 (15%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL PD ++ N L++  CK   ++ A+  +  ++R+    D  TL  ++  LC + ++ EA
Sbjct: 410 GLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEA 469

Query: 177 SGLFTK--------------------FVAFDCRP-----------NVIPNVICYASIIDG 205
            GL                       F  ++  P            + P++  Y ++I G
Sbjct: 470 QGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKG 529

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
           L + G + +      ++  +G+ PD   YN +I  YC        +G+   A + H + V
Sbjct: 530 LSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYC-------KEGDLENAFQFHNKMV 582

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
             + +      PDV++  +++N LC +  +DKA +LF     +G   DV+ Y++LI   C
Sbjct: 583 ENSFK------PDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMC 636

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG------ 379
             G +D A   F  +E+ G  PD  +YN ++++ S+  + EEA ++  ++   G      
Sbjct: 637 KDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESGTLSQSF 696

Query: 380 ----VRPDNSCILEAAELFRTLHNT---KFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
               ++P +    E+ +  +T   T     +     +  LV+GLC S + + A  +  ++
Sbjct: 697 SSPLLKPSSVDEAESGKDAKTEEETVENPQDSASEAYTKLVNGLCTSGQFKEAKAILDEM 756

Query: 433 PRYGPEPNVVTYTVMICGL 451
            + G   +  TY  ++ GL
Sbjct: 757 MQKGMSVDSSTYITLMEGL 775



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 122/310 (39%), Gaps = 73/310 (23%)

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
           HP+  ++  ++++ C    +  A      M+  G+ PD V Y++L++ +C  G + +AR 
Sbjct: 201 HPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARA 260

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKI--------------------------------- 362
           L   ++ +G  P   +YNTL+++Y+++                                 
Sbjct: 261 LLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLC 320

Query: 363 --EKVEEALSLYGEMISMG-VRPD----NS---------CILEAAELFRTLHNTKFELDL 406
              KV+EA  L  EM  +G + PD    N+         C  +A  L   +     +  L
Sbjct: 321 QAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATL 380

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
              N ++ GLCK   L  A     K+   G  P+V+TY  +I   C  G I KAY L   
Sbjct: 381 VTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTL--- 437

Query: 467 MEEKIRECLK---------------------AIELLHKMAKRYVKPDEITVSILEELLNK 505
           M+E +R  LK                     A  LL    +R   PDE++   +     K
Sbjct: 438 MDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFK 497

Query: 506 DENCHECMNL 515
           + N    + L
Sbjct: 498 EYNSEPALRL 507



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/115 (22%), Positives = 51/115 (44%)

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           L++S  +  +V  +L     ++S   R  ++    + + FR++   +   +   FN LV 
Sbjct: 153 LLHSLRRRVRVRPSLQAANAVLSALARSPSTSPQASLDAFRSIVALRLHPNHYTFNLLVH 212

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
             C    L  A      +  +G  P+ VTY  ++   C +G + +A  LL  M++
Sbjct: 213 THCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKK 267


>gi|91806015|gb|ABE65736.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 360

 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 160/324 (49%), Gaps = 17/324 (5%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           +++L+DA+  F  M+  +P P +  F+ LL A+A    +   I L E++  +G+  +  +
Sbjct: 53  DLKLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYT 112

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            +I +N FC+   +S A   LG++++  + P +VTL  L+ G C   + +EA  L  + V
Sbjct: 113 YSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMV 172

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
               +P+ +     + +++ GL +    ++   L   M  +G  PD   Y ++I   C  
Sbjct: 173 EMGYQPDTVT----FTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLC-- 226

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                 +G    AL L  +   G  E       DV+ Y +II+ LCK   +D A +LF  
Sbjct: 227 -----KRGEPDLALNLLNKMEKGKIE------ADVVIYNTIIDGLCKYKHMDDAFDLFNK 275

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M+++GI PDV  Y+ LI   C  GR  DA +L   +  +   PD   +N LI+++ K  K
Sbjct: 276 METKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGK 335

Query: 365 VEEALSLYGEMISMGVRPDNSCIL 388
           + EA  LY EM+   + P   C +
Sbjct: 336 LVEAEKLYDEMVKRSIDPSFVCTI 359



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 138/318 (43%), Gaps = 45/318 (14%)

Query: 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
           LC +  F  AS       + DCR N+   V+    + D +           LF DM    
Sbjct: 28  LCWERSFAGAS-------SDDCRENLSRKVLQDLKLDDAIG----------LFGDMVKSR 70

Query: 227 IYPDAFVYNSLIRVYCCAVNWEDAKGNT-SAALELHEEFVNGNGELGVICHPDVLSYCSI 285
            +P    ++ L+           AK N     + L E+  N    LG I H ++ +Y   
Sbjct: 71  PFPSIVEFSKLLSAI--------AKMNKFDLVISLGEQMQN----LG-ISH-NLYTYSIF 116

Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
           IN  C+   +  A  +   M   G  P +V  +SL++G+C   RI +A  L   +   G 
Sbjct: 117 INYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGY 176

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCILE----------AAE 392
            PDT ++ TL++   +  K  EA++L   M+  G +PD      ++           A  
Sbjct: 177 QPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALN 236

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
           L   +   K E D+ ++N ++DGLCK   +  A++LF K+   G +P+V TY  +I  LC
Sbjct: 237 LLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLC 296

Query: 453 IEGGIEKAYDLLPDMEEK 470
             G    A  LL DM EK
Sbjct: 297 NYGRWSDASRLLSDMLEK 314



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 135/334 (40%), Gaps = 41/334 (12%)

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           + DA    G +++    P +V    L+  +    KF     L  +         +  N+ 
Sbjct: 56  LDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNL----GISHNLY 111

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN-TSA 256
            Y+  I+  C+   ++    +   M   G  P     NSL+  +C         GN  S 
Sbjct: 112 TYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFC--------HGNRISE 163

Query: 257 ALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV 316
           A+ L ++ V    E+G    PD +++ ++++ L +     +A  L   M  +G  PD+V 
Sbjct: 164 AVALVDQMV----EMGY--QPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVT 217

Query: 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
           Y ++I+G C  G  D A  L   +E      D   YNT+I+   K + +++A  L+ +M 
Sbjct: 218 YGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKME 277

Query: 377 SMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
           + G++PD                      +  +N L+  LC   R   A  L   +    
Sbjct: 278 TKGIKPD----------------------VFTYNPLISCLCNYGRWSDASRLLSDMLEKN 315

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
             P++V +  +I     EG + +A  L  +M ++
Sbjct: 316 INPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKR 349



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 2/136 (1%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K GE +L  AL   N M   +    +  +N+++  L   K+  +   L  ++ T G+ PD
Sbjct: 227 KRGEPDL--ALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPD 284

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             + N L++C C     SDA   L  +L K  +PD+V    LI     +GK  EA  L+ 
Sbjct: 285 VFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYD 344

Query: 182 KFVAFDCRPNVIPNVI 197
           + V     P+ +  ++
Sbjct: 345 EMVKRSIDPSFVCTIV 360


>gi|449515696|ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 657

 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 122/430 (28%), Positives = 193/430 (44%), Gaps = 59/430 (13%)

Query: 89  SFNSLLGALAGKKYYVNFIC-LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGR 147
           +FN+LL  L  K+  +N  C L + +   G+ P+ VS N ++   C+   ++ A      
Sbjct: 251 TFNTLLSWLC-KEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKE 309

Query: 148 ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207
           +L   F+P+ VT   L+ G   +G    A  +F +        N++P       II GLC
Sbjct: 310 MLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMK----DANILPTDTTLGIIIKGLC 365

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
           K G   + R LF     +G  P    YN++I  +         +GN + A  ++ E    
Sbjct: 366 KAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFI-------KEGNINLASNVYREMC-- 416

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
             E+G+   P  ++Y S+I+  CK   +D A +L  DMK +G+  D+  Y +LIDG+C  
Sbjct: 417 --EVGIT--PSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKR 472

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
             +  A +L   +   G  P+   YN++I  +  +  VEEA+ LY +M++ G+       
Sbjct: 473 RDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGI------- 525

Query: 388 LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
                            DL  +  L+DGL KS RL  A ++  ++   G  P+   +TV+
Sbjct: 526 ---------------PCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVL 570

Query: 448 ICGLCIEGGIEKAYDLLPDMEEK-------IRECL-----------KAIELLHKMAKRYV 489
           I GLC +G  E A  +L DM  K       I   L           +A  L  +M  R +
Sbjct: 571 INGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGL 630

Query: 490 KPDEITVSIL 499
            PD IT  IL
Sbjct: 631 VPDNITYDIL 640



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/401 (26%), Positives = 193/401 (48%), Gaps = 34/401 (8%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFIC--LSERLNTIGLLPDF 122
           E ++N+A   ++ +I    +P + S+N+++     +K  +N  C    E L+  G  P+ 
Sbjct: 262 EGKMNEACNLWDEVIAKGISPNVVSYNNIILGHC-RKDNINAACKVYKEMLDN-GFTPNA 319

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           V+  ILM+ + K   + +AF    R+      P   TLG +I+GLC  G+  E   LF K
Sbjct: 320 VTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNK 379

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
           FV+    P  +P    Y +IIDG  K+G +N    ++ +M   GI P    Y SLI  +C
Sbjct: 380 FVSQGFVPTCMP----YNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFC 435

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
                   KGN    ++L  + +N     G+    D+ +Y ++I+  CK   +  A EL 
Sbjct: 436 --------KGNN---IDLALKLLNDMKRKGL--KMDIKAYGTLIDGFCKRRDMKSAHELL 482

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
            +++  G+ P+  +Y+S+I G+  M  +++A  L+  + +EG   D  +Y +LI+   K 
Sbjct: 483 NELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKS 542

Query: 363 EKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDLTVF 409
            ++  A  ++ EM+S G+ PD+                  A ++   ++       + ++
Sbjct: 543 GRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIY 602

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
           N L+ G  K   L+ A+ L  ++   G  P+ +TY +++ G
Sbjct: 603 NTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVNG 643



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 157/321 (48%), Gaps = 31/321 (9%)

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           L++G CMQG    A  L  +         ++PN + Y+ +IDG CK+G + K    + +M
Sbjct: 151 LMKGYCMQGNLRSALVLVNEI----SESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEM 206

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
           K +GI    +  NS++  Y    +W++A    + ALE            G+    +V ++
Sbjct: 207 KTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALES-----------GL---ANVFTF 252

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
            ++++ LCK+  +++A  L+ ++ ++GI P+VV Y+++I G+C    I+ A K++  +  
Sbjct: 253 NTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLD 312

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI-------------LE 389
            G  P+  ++  L++ Y K   +E A S++  M    + P ++ +              E
Sbjct: 313 NGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFE 372

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
             +LF    +  F      +N ++DG  K   +  A  +++++   G  P+ VTYT +I 
Sbjct: 373 GRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLID 432

Query: 450 GLCIEGGIEKAYDLLPDMEEK 470
           G C    I+ A  LL DM+ K
Sbjct: 433 GFCKGNNIDLALKLLNDMKRK 453



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 148/345 (42%), Gaps = 43/345 (12%)

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
           K+G + +    FL  K RG+  D   Y+  + + C        K N+  AL L  E    
Sbjct: 52  KEGNILEAEQHFLQAKARGVELDQEAYSIFVHLLCL-------KPNSGYALSLLREMRAA 104

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
               G I  P   ++ S+I +  K+  V +A  L  DM + G   ++ V +SL+ GYC+ 
Sbjct: 105 ----GWI--PPEGTFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQ 158

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---- 383
           G +  A  L   I   G +P+  +Y+ LI+   K   +E+A   Y EM + G+R      
Sbjct: 159 GNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSL 218

Query: 384 NSCI-----LEAAELFRTLHNTKFELDLT---VFNCLVDGLCKSWRLRSAWELFKKLPRY 435
           NS +      ++ +   T+ N   E  L     FN L+  LCK  ++  A  L+ ++   
Sbjct: 219 NSILEGYLKCQSWQNAFTMFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAK 278

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKA------------------YDLLPDMEEKIRECLKA 477
           G  PNVV+Y  +I G C +  I  A                  + +L D   K  +   A
Sbjct: 279 GISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENA 338

Query: 478 IELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
             + H+M    + P + T+ I+ + L K     E  +L   F+S+
Sbjct: 339 FSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQ 383



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 96/220 (43%), Gaps = 28/220 (12%)

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
           K  T  A ELH      N  L V    D  +   ++ +  K+  + +A++ FL  K+RG+
Sbjct: 18  KNMTCEARELH------NKMLLVGVTGDCFTLHVMLRACLKEGNILEAEQHFLQAKARGV 71

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
             D   YS  +   CL      A  L   + + G IP   ++ ++I +  K   V EAL 
Sbjct: 72  ELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACVKEGNVAEALR 131

Query: 371 LYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
           L  +M++ G                        ++L V   L+ G C    LRSA  L  
Sbjct: 132 LKDDMVNCGK----------------------SMNLAVATSLMKGYCMQGNLRSALVLVN 169

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           ++   G  PN VTY+V+I G C  G IEKA++   +M+ K
Sbjct: 170 EISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTK 209


>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Cucumis sativus]
          Length = 728

 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 105/434 (24%), Positives = 187/434 (43%), Gaps = 46/434 (10%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           + ++  G+ PD  +   ++  +C+   V +A   +  ++ + F  D  TL  +I   C +
Sbjct: 233 DEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEK 292

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
                A   F K      +  + PN+I Y+S+I GLCK G V +   L  +M   G  P+
Sbjct: 293 SLVNRAVWFFHKVT----KMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPN 348

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
            + + SLI   C        KG T  A  L  + +  +        P+V +Y ++I+  C
Sbjct: 349 VYTHTSLIHGLC-------KKGWTERAFRLFLKLIRSDNY-----KPNVHTYTAMISGYC 396

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K+  + +A+ LF  MK +G++P+   Y++LIDG+C  G    A +L   + +EG  P+T 
Sbjct: 397 KEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTC 456

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL-------------EAAELFRTL 397
           +YN++++   K  + EEA  L        +  D                  +A      +
Sbjct: 457 TYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKM 516

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
               F+ D+ ++  L+   C+   ++ + +LF ++ + G  P   TYT MICG C E  +
Sbjct: 517 FKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKV 576

Query: 458 EKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLP 517
                              A++   KM+     PD I+   L   L K+    E   L  
Sbjct: 577 S-----------------LAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYD 619

Query: 518 SFLSRNQEESKLTR 531
           + + +     ++TR
Sbjct: 620 TMIDKGLSPCEVTR 633



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 171/388 (44%), Gaps = 33/388 (8%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +N A+ FF+ +  M  +P + +++S++  L  +        L E +   G  P+  +   
Sbjct: 295 VNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTS 354

Query: 128 LMNCFCKMIGVSDAFVALGRILRK-VFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           L++  CK      AF    +++R   + P+V T   +I G C + K + A  LF +    
Sbjct: 355 LIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMK-- 412

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                ++PN   Y ++IDG CK G  +K   L   M   G +P+   YNS++   C    
Sbjct: 413 --EQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGR 470

Query: 247 WEDA--------------KGNTSAAL--------ELHEEFVNGNGELGVICHPDVLSYCS 284
            E+A               G T   L        ++++  V  N    V   PD+  Y +
Sbjct: 471 AEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTT 530

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           +I + C+  ++  +++LF ++   G+ P    Y+S+I GYC   ++  A K F  +   G
Sbjct: 531 LIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHG 590

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL 404
           C PD+ SY  LI+   K  +++EA  LY  MI  G+ P      E   +  T    K E 
Sbjct: 591 CAPDSISYGALISGLCKESRLDEARQLYDTMIDKGLSP-----CEVTRVTLTYEYCKTE- 644

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKL 432
           D      +++ L K   +R+   L +KL
Sbjct: 645 DFASAMVILERLNKKLWIRTVHTLIRKL 672



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 86/171 (50%), Gaps = 22/171 (12%)

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353
           LV+ A  +F +M +RG+ PD   Y  +I GYC  G + +A +    +   G + D ++  
Sbjct: 224 LVEYAGNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLT 283

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLV 413
            +I ++ +   V  A+  + ++  MG+ P                      +L  ++ ++
Sbjct: 284 LIITAFCEKSLVNRAVWFFHKVTKMGLSP----------------------NLINYSSMI 321

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            GLCK   ++ A+EL +++ + G +PNV T+T +I GLC +G  E+A+ L 
Sbjct: 322 SGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLF 372



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 115/265 (43%), Gaps = 29/265 (10%)

Query: 218 LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI-CH 276
           + LDM+ +G+     V N +I V              +A + L E   N   E+     +
Sbjct: 196 MILDMRNQGLVLTTRVMNRIILV--------------AAEMRLVEYAGNVFDEMSARGVY 241

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PD  +Y  II   C++  V +A     +M  RG + D    + +I  +C    ++ A   
Sbjct: 242 PDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWF 301

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------- 383
           F  +   G  P+  +Y+++I+   K   V++A  L  EM+  G +P+             
Sbjct: 302 FHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCK 361

Query: 384 NSCILEAAELF-RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
                 A  LF + + +  ++ ++  +  ++ G CK  +L  A  LF+++   G  PN  
Sbjct: 362 KGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTN 421

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDM 467
           TYT +I G C  G   KAY+L+  M
Sbjct: 422 TYTTLIDGHCKAGNFSKAYELMELM 446



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 2/128 (1%)

Query: 57  LSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           +SE  K    ++N AL F N M  +   P +  + +L+ A   +    +   L + +  +
Sbjct: 497 ISEQCK--RADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKL 554

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL P   +   ++  +C+   VS A     ++     +PD ++ G LI GLC + +  EA
Sbjct: 555 GLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEA 614

Query: 177 SGLFTKFV 184
             L+   +
Sbjct: 615 RQLYDTMI 622


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 120/472 (25%), Positives = 210/472 (44%), Gaps = 63/472 (13%)

Query: 66  VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
           V  ++A    N + H + +  + S+N L   L+         CL + +   G+ P+ +S 
Sbjct: 134 VSSHEARFVLNLLTHHEFSLSVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISF 193

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           N ++N  CK+  V  A      +++  F  D  T   LI G C   +  +A  +F     
Sbjct: 194 NTMVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQ 253

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
             C    + N + Y ++I G C+ G +++   LF  MK  G +PD   Y  L+  +C   
Sbjct: 254 EGC----LRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFC--- 306

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
                 G  + AL+  EE V    E      P+V +Y  +I+  CK   +D+  E+   M
Sbjct: 307 ----EVGKETEALKFFEEMVENGIE------PNVYTYTVLIDYFCKVGKMDEGMEMLSTM 356

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
             +G++  VV +++LIDGYC  G ++DA  +  S++     P++ +YN LI  + + + +
Sbjct: 357 LEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSM 416

Query: 366 EEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
           + A++L  +M    + P                      +L  +N L+ GLCK+  + SA
Sbjct: 417 DRAMALLNKMYENKLSP----------------------NLVTYNTLIHGLCKARVVDSA 454

Query: 426 WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELL---- 481
           W L   + + G  P+  T+   I  LC  G +E+A+ +   ++EK  E   A E L    
Sbjct: 455 WRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAE---ANEFLYTAL 511

Query: 482 -------------HKMAKRYV----KPDEITVSILEELLNKDENCHECMNLL 516
                        H + KR +     P+ IT ++L + L K+    + M+L+
Sbjct: 512 IDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLV 563



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 110/408 (26%), Positives = 181/408 (44%), Gaps = 25/408 (6%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           + DA+C  + M   +  P   ++N L+     KK     + L  ++    L P+ V+ N 
Sbjct: 381 MEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNT 440

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++  CK   V  A+     +++  F PD  T    I  LC  GK  +A  +F       
Sbjct: 441 LIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLK--- 497

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
              +   N   Y ++IDG CK    +   +LF  M   G +P++  +N L+       + 
Sbjct: 498 -EKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLL-------DG 549

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
              +G    A+ L    V+  G+      P V +Y  +I  + ++   D+A      M S
Sbjct: 550 LRKEGKVEDAMSL----VDVMGKFDA--KPTVHTYTILIEEILRESDFDRANMFLDQMIS 603

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            G  P+VV Y++ I  YC  GR+ +A ++ V I+ EG + D+  Y+ L+N+Y  I +++ 
Sbjct: 604 SGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDS 663

Query: 368 ALSLYGEMISMGVRPDNSC--ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
           A  +   M   G  P      IL    +F   +     LDL   N  VD     W++ + 
Sbjct: 664 AFGVLIRMFDTGCEPSRQTYSILLKHLIFEKYNKEGMGLDLNSTNISVDN-ANIWKI-AD 721

Query: 426 WE----LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           +E    LF+K+   G  PNV TY+ +I GLC    +  A+ L   M+E
Sbjct: 722 FEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKE 769



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 177/404 (43%), Gaps = 39/404 (9%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++++AL  F  M      P +P++  L+ A          +   E +   G+ P+  +  
Sbjct: 275 KIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYT 334

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +L++ FCK+  + +    L  +L K     VV    LI G C +G   +A  +       
Sbjct: 335 VLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKL- 393

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                V PN   Y  +I G C+   +++   L   M    + P+   YN+LI   C A  
Sbjct: 394 ---NKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKA-- 448

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                    +A  LH   +      G +  PD  ++C+ I+ LCK   V++A ++F  +K
Sbjct: 449 -----RVVDSAWRLHHLMIKD----GFV--PDQRTFCAFIDCLCKMGKVEQAHQVFESLK 497

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            +    +  +Y++LIDGYC   +  DA  LF  +  EGC P++ ++N L++   K  KVE
Sbjct: 498 EKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVE 557

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           +A+SL   M     +P             T+H          +  L++ + +      A 
Sbjct: 558 DAMSLVDVMGKFDAKP-------------TVH---------TYTILIEEILRESDFDRAN 595

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
               ++   G +PNVVTYT  I   C +G + +A +++  ++E+
Sbjct: 596 MFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEE 639



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 158/366 (43%), Gaps = 44/366 (12%)

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           +V  Y  +   L + G ++++  LF DM   G+ P+   +N+++  +C         GN 
Sbjct: 154 SVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVNAHC-------KIGNV 206

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
             A    + +  G  + G  C  D  +Y S+I   CK   +  A ++F  M   G + + 
Sbjct: 207 VVA----KAYFCGLMKFGFCC--DSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNE 260

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           V Y++LI G+C +G+ID+A +LF  ++ +GC PD  +Y  L+ ++ ++ K  EAL  + E
Sbjct: 261 VSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEE 320

Query: 375 MISMGVRP---------DNSCIL----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
           M+  G+ P         D  C +    E  E+  T+        +  FN L+DG CK   
Sbjct: 321 MVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGM 380

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------ 469
           +  A  +   +      PN  TY  +ICG C +  +++A  LL  M E            
Sbjct: 381 MEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNT 440

Query: 470 ------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
                 K R    A  L H M K    PD+ T     + L K     +   +  S   ++
Sbjct: 441 LIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKH 500

Query: 524 QEESKL 529
            E ++ 
Sbjct: 501 AEANEF 506



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/396 (23%), Positives = 172/396 (43%), Gaps = 36/396 (9%)

Query: 80  HMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVS 139
           H +   F+  + +L+      + + +   L +R+   G  P+ ++ N+L++   K   V 
Sbjct: 500 HAEANEFL--YTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVE 557

Query: 140 DAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICY 199
           DA   +  + +    P V T   LI  +  +  F  A+    + ++  C+PNV+     Y
Sbjct: 558 DAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVT----Y 613

Query: 200 ASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG------- 252
            + I   C+ G + +   + + +K  GI  D+F+Y+ L+  Y C    + A G       
Sbjct: 614 TAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFD 673

Query: 253 -------NTSAALELHEEFVNGNGE-LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                   T + L  H  F   N E +G+  +   +S  +   ++ K    +    LF  
Sbjct: 674 TGCEPSRQTYSILLKHLIFEKYNKEGMGLDLNSTNISVDNA--NIWKIADFEIITMLFEK 731

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M  +G +P+V  YS LI G C +  +  A +LF  ++  G  P  + +N+L++S  K+  
Sbjct: 732 MVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCKLGM 791

Query: 365 VEEALSL------YGEMISMGVRPDNSCIL-------EAAELFRTLHNTKFELDLTVFNC 411
            EEAL L      Y  +  +       C L       +A E+FR+L +  +  D  V+  
Sbjct: 792 HEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDEVVWKV 851

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
           L+DGL +   +    +L   + + G   +  T+T++
Sbjct: 852 LLDGLVRKGYVDECSQLRDIMEKTGCRLHSDTHTML 887



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 129/317 (40%), Gaps = 43/317 (13%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E + + A  F + MI     P + ++ + + A   +   +    +  ++   G+L D   
Sbjct: 588 ESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFI 647

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL----- 179
            ++L+N +  +  +  AF  L R+      P   T   L++ L  +    E  GL     
Sbjct: 648 YDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILLKHLIFEKYNKEGMGLDLNST 707

Query: 180 ---------------------FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVL 218
                                F K V   C    +PNV  Y+ +I GLCK   ++    L
Sbjct: 708 NISVDNANIWKIADFEIITMLFEKMVEQGC----VPNVNTYSKLIKGLCKVEHLSLAFRL 763

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD 278
           F  MK  GI P   ++NSL+   CC +      G    AL L +  +  N     + H +
Sbjct: 764 FNHMKESGISPSENIHNSLLSS-CCKL------GMHEEALRLLDSMMEYNH----LAHLE 812

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
             SY  ++  L +    +KA+E+F  + S G   D VV+  L+DG    G +D+  +L  
Sbjct: 813 --SYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDEVVWKVLLDGLVRKGYVDECSQLRD 870

Query: 339 SIESEGCIPDTSSYNTL 355
            +E  GC   + ++  L
Sbjct: 871 IMEKTGCRLHSDTHTML 887


>gi|242061542|ref|XP_002452060.1| hypothetical protein SORBIDRAFT_04g017840 [Sorghum bicolor]
 gi|241931891|gb|EES05036.1| hypothetical protein SORBIDRAFT_04g017840 [Sorghum bicolor]
          Length = 674

 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 117/472 (24%), Positives = 199/472 (42%), Gaps = 114/472 (24%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P  ++ NIL+   C    ++DA   L   L+   + D V+   L+ G C  G   +A  +
Sbjct: 117 PAVITCNILIKKLCARRRLADAERVL-EALKTSGAADAVSHNTLVAGYCRDGSLWDAERV 175

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
                    R +   NV+ Y ++IDG C+ G +     L   M    + PD + YN++++
Sbjct: 176 LEA-----ARASGAANVVTYTALIDGYCRSGRLTDALRLIASMP---VAPDTYTYNTVLK 227

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C A  WE+A+       EL  E +  N      CHP+ +++ + I + C++ L+D+A 
Sbjct: 228 GLCFAKQWEEAE-------ELMREMIRNN------CHPNEVTFATQIRAFCQNGLLDRAV 274

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGY--------------------------------CLM 327
           EL   M   G +PDVV+YS+L++G+                                C+ 
Sbjct: 275 ELLEQMPKYGCMPDVVIYSTLVNGFSEHGRVDDALKLLSTMLCRPNTVCYNAALKGLCIA 334

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN--- 384
           GR D+  +L   +  + C P+ ++++TLINS  +    E A+ +  +M   G  PD    
Sbjct: 335 GRWDEVGELIAEMVRKDCPPNDATFSTLINSLCQNRLAEYAIEVLEQMQKYGYMPDVVSY 394

Query: 385 ----SCILE--------------------------------------AAELFRTLHNTKF 402
               SC  E                                      AAEL   +     
Sbjct: 395 NTIISCFSEQACADDALKLLNSMLCKPDTISFNAVLKCLCRAERWYDAAELMAKMLKEDC 454

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
             +   FN L+D LC++ +++ A E+F+ +P+Y   P++VTY+ +I G   +G  + A+D
Sbjct: 455 HTNEMTFNILIDSLCQNGQVKDAIEMFELMPKYRCTPDIVTYSSLINGFSEQGLDKVAFD 514

Query: 463 LLPDMEEKI-----RECLKAI----------ELLHKMAKRYVKPDEITVSIL 499
           L   M  +         LK +          EL+  M  +   P+E+T +IL
Sbjct: 515 LFRSMPCRADIFSYNATLKGLCMAARWDDAGELIADMVTKDCLPNEVTFNIL 566



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 108/461 (23%), Positives = 196/461 (42%), Gaps = 64/461 (13%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           MI     P   +F + + A          + L E++   G +PD V  + L+N F +   
Sbjct: 245 MIRNNCHPNEVTFATQIRAFCQNGLLDRAVELLEQMPKYGCMPDVVIYSTLVNGFSEHGR 304

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           V DA   L  +L +   P+ V     ++GLC+ G++ E   L  + V  DC PN      
Sbjct: 305 VDDALKLLSTMLCR---PNTVCYNAALKGLCIAGRWDEVGELIAEMVRKDCPPNDAT--- 358

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            ++++I+ LC++        +   M+  G  PD   YN++I  +         +     A
Sbjct: 359 -FSTLINSLCQNRLAEYAIEVLEQMQKYGYMPDVVSYNTIISCF-------SEQACADDA 410

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
           L+L            ++C PD +S+ +++  LC+      A EL   M       + + +
Sbjct: 411 LKLLN---------SMLCKPDTISFNAVLKCLCRAERWYDAAELMAKMLKEDCHTNEMTF 461

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM-- 375
           + LID  C  G++ DA ++F  +    C PD  +Y++LIN +S+    + A  L+  M  
Sbjct: 462 NILIDSLCQNGQVKDAIEMFELMPKYRCTPDIVTYSSLINGFSEQGLDKVAFDLFRSMPC 521

Query: 376 -------------ISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRL 422
                        + M  R D     +A EL   +       +   FN L++ LC+   +
Sbjct: 522 RADIFSYNATLKGLCMAARWD-----DAGELIADMVTKDCLPNEVTFNILINSLCQKGLV 576

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM--------------- 467
             A E+++++P+YG  P++ TY  +I G   +G ++ A   L  M               
Sbjct: 577 NRAIEVYEQMPKYGITPDIFTYNALINGYSEQGCLDDALKFLSTMPCEPDTISYNSILKG 636

Query: 468 ---EEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505
               E+ ++   A +L+ +M ++   P+E+T     +L  K
Sbjct: 637 LCRAERWKD---AEKLVTEMLRKNCTPNEVTFKYANQLFIK 674



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 171/396 (43%), Gaps = 56/396 (14%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
           P V+T   LI+ LC + +  +A  +         + +   + + + +++ G C+DG +  
Sbjct: 117 PAVITCNILIKKLCARRRLADAERVLEAL-----KTSGAADAVSHNTLVAGYCRDGSLWD 171

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
              +    +  G   +   Y +LI  YC         G  + AL L            + 
Sbjct: 172 AERVLEAARASGA-ANVVTYTALIDGYC-------RSGRLTDALRLIA---------SMP 214

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
             PD  +Y +++  LC     ++A+EL  +M      P+ V +++ I  +C  G +D A 
Sbjct: 215 VAPDTYTYNTVLKGLCFAKQWEEAEELMREMIRNNCHPNEVTFATQIRAFCQNGLLDRAV 274

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI------- 387
           +L   +   GC+PD   Y+TL+N +S+  +V++AL L   M+    RP+  C        
Sbjct: 275 ELLEQMPKYGCMPDVVIYSTLVNGFSEHGRVDDALKLLSTML---CRPNTVCYNAALKGL 331

Query: 388 ------LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
                  E  EL   +       +   F+ L++ LC++     A E+ +++ +YG  P+V
Sbjct: 332 CIAGRWDEVGELIAEMVRKDCPPNDATFSTLINSLCQNRLAEYAIEVLEQMQKYGYMPDV 391

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDMEEK--------IRECL-------KAIELLHKMAK 486
           V+Y  +I     +   + A  LL  M  K        + +CL        A EL+ KM K
Sbjct: 392 VSYNTIISCFSEQACADDALKLLNSMLCKPDTISFNAVLKCLCRAERWYDAAELMAKMLK 451

Query: 487 RYVKPDEITVSILEELLNKD---ENCHECMNLLPSF 519
                +E+T +IL + L ++   ++  E   L+P +
Sbjct: 452 EDCHTNEMTFNILIDSLCQNGQVKDAIEMFELMPKY 487



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 104/246 (42%), Gaps = 44/246 (17%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P V++   +I  LC    +  A+ +   +K+ G   D V +++L+ GYC  G + DA ++
Sbjct: 117 PAVITCNILIKKLCARRRLADAERVLEALKTSGA-ADAVSHNTLVAGYCRDGSLWDAERV 175

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
             +  + G   +  +Y  LI+ Y +  ++ +AL L   + SM V PD             
Sbjct: 176 LEAARASGA-ANVVTYTALIDGYCRSGRLTDALRL---IASMPVAPDT------------ 219

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
                       +N ++ GLC + +   A EL +++ R    PN VT+   I   C  G 
Sbjct: 220 ----------YTYNTVLKGLCFAKQWEEAEELMREMIRNNCHPNEVTFATQIRAFCQNGL 269

Query: 457 IEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           +++A                 +ELL +M K    PD +  S L    ++     + + LL
Sbjct: 270 LDRA-----------------VELLEQMPKYGCMPDVVIYSTLVNGFSEHGRVDDALKLL 312

Query: 517 PSFLSR 522
            + L R
Sbjct: 313 STMLCR 318


>gi|218193284|gb|EEC75711.1| hypothetical protein OsI_12542 [Oryza sativa Indica Group]
          Length = 1031

 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 187/413 (45%), Gaps = 63/413 (15%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           + N+LL  +         + L E++ T  +LPD  +  IL++ FCK   +  A + L  +
Sbjct: 601 TLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKIVPALILLQMM 660

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
           L K   PD +   CL+ GL  +G+   AS +F + +   C+  +  + I Y S+++G  K
Sbjct: 661 LEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEII---CKEGLYADCIAYNSMMNGYLK 717

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN-- 266
            G +N++  L  +M    +YP +  YN L+  Y         KG  S  L L+ + V   
Sbjct: 718 GGQINEIERLMRNMHENEVYPSSASYNILMHGYI-------KKGQLSRTLYLYRDMVKEG 770

Query: 267 -------------GNGELGVI----------------CHPDVLSYCSIINSLCKDVLVDK 297
                        G  E G+I                  P    Y ++IN+ C+   +D 
Sbjct: 771 IKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEESGLQPKHTHYIALINAKCRVGDIDG 830

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A EL  DMK+ G++P  V  SS++ G C  G++++A  +F SI   G +P  +++ TL++
Sbjct: 831 AFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMH 890

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
              K  K+++A  L   M S G++                      +D+  +N L+ GLC
Sbjct: 891 GLCKEFKIDDAFHLKQLMESCGLK----------------------VDVVTYNVLITGLC 928

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
               +  A +L++++   G  PN+ TY  +   +   G ++    LL D+E++
Sbjct: 929 NKKCICDALDLYEEMKSKGLLPNITTYITLTGAMYATGTMQDGEKLLKDIEDR 981



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 99/433 (22%), Positives = 193/433 (44%), Gaps = 72/433 (16%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P   ++N++L     K    + + + + +   G+  D  + NI+++  CK+   + A++ 
Sbjct: 262 PNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLL 321

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           L R+     +PD  +   LI G   +GK   A  +F + +    R ++ P+V  Y ++ID
Sbjct: 322 LKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQML----RQSLKPSVATYTALID 377

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           G C++G  ++ R +  +M+  G+ P        I + C   +  D               
Sbjct: 378 GYCRNGRTDEARRVLYEMQITGVRPREVSKAKQI-LKCMLADGID--------------- 421

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
                       PDV++Y ++IN +CK  ++ + KE+   M+  G++P+ V+Y++L+  +
Sbjct: 422 ------------PDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYF 469

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           C  G   +A K FV I   G + ++  +N L+ S+ +                       
Sbjct: 470 CKAGHAKEALKYFVDIYRSGLVANSVIHNALLCSFYR----------------------E 507

Query: 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
             I EA +  + +   K   D+  FNC++D  C+   +  A+ ++  + R+G  P++ TY
Sbjct: 508 GMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTY 567

Query: 445 TVMICGLCIEGGIEKAYDLLP-------DMEEKIRECL-----------KAIELLHKMAK 486
             ++ GLC  G + +A + +         ++EK    L           +A++L  KM  
Sbjct: 568 GSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMVT 627

Query: 487 RYVKPDEITVSIL 499
           R + PD  T +IL
Sbjct: 628 RNILPDTYTYTIL 640



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 113/448 (25%), Positives = 188/448 (41%), Gaps = 56/448 (12%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           + +A  F  YM  M+ +  + SFN ++ +   +   +    + + +   G  PD  +   
Sbjct: 510 IAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGS 569

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+   C+   +  A   +  +L K  + D  TL  L+ G+C  G   EA  L  K V   
Sbjct: 570 LLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMVT-- 627

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
              N++P+   Y  ++DG CK G +    +L   M  +G+ PD   Y        C +N 
Sbjct: 628 --RNILPDTYTYTILLDGFCKRGKIVPALILLQMMLEKGLVPDTIAYT-------CLLNG 678

Query: 248 EDAKGNTSAALELHEEFV----------------NG---NGELGVI-----------CHP 277
              +G   AA  + +E +                NG    G++  I            +P
Sbjct: 679 LVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYP 738

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
              SY  +++   K   + +   L+ DM   GI PD V Y  LI G C  G I+ A K  
Sbjct: 739 SSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFL 798

Query: 338 --VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC--------- 386
             + +E  G  P  + Y  LIN+  ++  ++ A  L  +M ++GV P             
Sbjct: 799 EKMVLEESGLQPKHTHYIALINAKCRVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLC 858

Query: 387 ----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
               + EA  +F ++        +  F  L+ GLCK +++  A+ L + +   G + +VV
Sbjct: 859 KCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVV 918

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           TY V+I GLC +  I  A DL  +M+ K
Sbjct: 919 TYNVLITGLCNKKCICDALDLYEEMKSK 946



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 157/370 (42%), Gaps = 31/370 (8%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           R+   G+LP+ V    L+  FCK     +A      I R     + V    L+     +G
Sbjct: 449 RMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALLCSFYREG 508

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
              EA     +F  +  R  +  +V  +  IID  C+ G V +   ++ +M   G  PD 
Sbjct: 509 MIAEAE----QFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDI 564

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
             Y SL+R  C   +   AK      LE               C  D  +  +++  +CK
Sbjct: 565 CTYGSLLRGLCQGGHLVQAKEFMVYLLE-------------KACAIDEKTLNTLLVGICK 611

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
              +D+A +L   M +R I+PD   Y+ L+DG+C  G+I  A  L   +  +G +PDT +
Sbjct: 612 HGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKIVPALILLQMMLEKGLVPDTIA 671

Query: 352 YNTLINSYSKIEKVEEALSLYGEMI-SMGVRPD-------------NSCILEAAELFRTL 397
           Y  L+N      +V+ A  ++ E+I   G+  D                I E   L R +
Sbjct: 672 YTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNM 731

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
           H  +       +N L+ G  K  +L     L++ + + G +P+ VTY ++I GLC  G I
Sbjct: 732 HENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLI 791

Query: 458 EKAYDLLPDM 467
           E A   L  M
Sbjct: 792 EIAVKFLEKM 801



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 113/255 (44%), Gaps = 30/255 (11%)

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           DV +   ++NSLC    + KA+ +   MK+   +P+ V Y+++++ Y   GR   A ++ 
Sbjct: 229 DVTTCNIVLNSLCTQGKLSKAESMLQKMKN-CRLPNAVTYNTILNWYVKKGRCKSALRIL 287

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397
             +E  G   D  +YN +I+   K+++   A  L   M  + + PD              
Sbjct: 288 DDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECS----------- 336

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                      +N L+ G     ++  A  +F ++ R   +P+V TYT +I G C  G  
Sbjct: 337 -----------YNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRT 385

Query: 458 EKAYDLLPDME---EKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMN 514
           ++A  +L +M+    + RE  KA ++L  M    + PD IT S L   + K    HE   
Sbjct: 386 DEARRVLYEMQITGVRPREVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHET-- 443

Query: 515 LLPSFLSRNQEESKL 529
                LSR Q+   L
Sbjct: 444 --KEILSRMQKSGVL 456


>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
 gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
          Length = 789

 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 116/411 (28%), Positives = 188/411 (45%), Gaps = 34/411 (8%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           KSG V+  DAL  F+ M      P   ++  ++  L   K   +   L +++   G+ PD
Sbjct: 208 KSGNVK--DALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPD 265

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
           FV+ N L+N FC +  V +AF  L    +  +  DV    CLIRGL    ++ +   L+ 
Sbjct: 266 FVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYR 325

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           K +      NV P+V  Y  ++ GL + G V     L  +M   G+ PD   YN LI+ +
Sbjct: 326 KMI----EDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGF 381

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C         G  S A  L  E    +      C P+V +Y  +I+ +C++ L   A+E+
Sbjct: 382 C-------DMGLLSEARSLQLEISRHD------CFPNVKTYSILISGMCRNGLTRDAQEI 428

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE---SEGCIPDTSSYNTLINS 358
           F +M+  G  P  V ++SLIDG C  G+++ A  LF  +E   +       S   + +  
Sbjct: 429 FNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKMEIGRNPSLFLRLSQGPSHVLD 488

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
            + ++K+ E L             D+  I +A  +   L ++     +  +N LV+G CK
Sbjct: 489 SASLQKMVEQLC------------DSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCK 536

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
                 A++LF+++   G  P+ VTY  +I GL      E AY +   ME+
Sbjct: 537 LGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEK 587



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 179/400 (44%), Gaps = 26/400 (6%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           AL  +  M+ +   P + +F+ L+  L       + + L + +   G+LPD  +  ++++
Sbjct: 180 ALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVIS 239

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
             C+   V DA+    ++      PD VT   L+ G CM  +  EA  L   F     + 
Sbjct: 240 GLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFE----KD 295

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
             + +V  Y+ +I GL +      V++L+  M    + PD ++Y  +++    A      
Sbjct: 296 GYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEA------ 349

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
            G    ALEL  E      E GV+  PD + Y  +I   C   L+ +A+ L L++     
Sbjct: 350 -GKVRDALELLNEMT----ESGVV--PDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDC 402

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
            P+V  YS LI G C  G   DA+++F  +E  GC P   ++N+LI+   K  ++E+A  
Sbjct: 403 FPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHL 462

Query: 371 LYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
           L+ +M  +G  P        +   R        LD      +V+ LC S  +  A+ +  
Sbjct: 463 LFYKM-EIGRNP--------SLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILM 513

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           +L   G  P + TY +++ G C  G    AY L  +M+ K
Sbjct: 514 QLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFK 553



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 160/355 (45%), Gaps = 30/355 (8%)

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +L+  + KM     A    G +     +PDV T   ++  L  +     A  ++T+ +  
Sbjct: 131 VLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQKNFLLLALTVYTRMMKL 190

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           +C    +PNV  ++ +IDGLCK G V     LF +M  RGI PDAF Y  +I   C +  
Sbjct: 191 NC----LPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKR 246

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            +DA               +   + GV   PD ++  +++N  C    VD+A  L    +
Sbjct: 247 VDDAY-----------RLFDKMKDSGV--GPDFVTCNALLNGFCMLDRVDEAFSLLRLFE 293

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
             G + DV  YS LI G     R +D + L+  +  +   PD   Y  ++   ++  KV 
Sbjct: 294 KDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVR 353

Query: 367 EALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDLTVFNCLV 413
           +AL L  EM   GV PD  C             + EA  L   +       ++  ++ L+
Sbjct: 354 DALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILI 413

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
            G+C++   R A E+F ++ + G  P+ VT+  +I GLC  G +EKA+ L   ME
Sbjct: 414 SGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKME 468



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 145/320 (45%), Gaps = 30/320 (9%)

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           LI+     G   +A   F     FDC     P+V  Y  I+D L +  F+     ++  M
Sbjct: 132 LIKVYLKMGLTDKAMETFGSMRDFDC----TPDVYTYNMILDVLIQKNFLLLALTVYTRM 187

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
                 P+   ++ LI   C         GN   AL L +E      + G++  PD  +Y
Sbjct: 188 MKLNCLPNVATFSILIDGLC-------KSGNVKDALHLFDEMT----QRGIL--PDAFTY 234

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
           C +I+ LC+   VD A  LF  MK  G+ PD V  ++L++G+C++ R+D+A  L    E 
Sbjct: 235 CVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEK 294

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILE 389
           +G + D   Y+ LI    + ++ E+   LY +MI   V+PD                + +
Sbjct: 295 DGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRD 354

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
           A EL   +  +    D   +N L+ G C    L  A  L  ++ R+   PNV TY+++I 
Sbjct: 355 ALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILIS 414

Query: 450 GLCIEGGIEKAYDLLPDMEE 469
           G+C  G    A ++  +ME+
Sbjct: 415 GMCRNGLTRDAQEIFNEMEK 434



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 141/318 (44%), Gaps = 29/318 (9%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
            ++ L+  L   K Y +   L  ++    + PD     I+M    +   V DA   L  +
Sbjct: 303 GYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEM 362

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
                 PD V    LI+G C  G  +EA  L  +    DC     PNV  Y+ +I G+C+
Sbjct: 363 TESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDC----FPNVKTYSILISGMCR 418

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK---------GNTSAALE 259
           +G     + +F +M+  G YP A  +NSLI   C     E A           N S  L 
Sbjct: 419 NGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKMEIGRNPSLFLR 478

Query: 260 LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSS 319
           L +      G   V+   D  S   ++  LC   L+ KA  + + +   G  P +  Y+ 
Sbjct: 479 LSQ------GPSHVL---DSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNI 529

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           L++G+C +G  + A KLF  ++ +G  PDT +Y TLIN   + ++ E+A  ++ +M   G
Sbjct: 530 LVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEKNG 589

Query: 380 VRPDNSCILEAAELFRTL 397
             PD       A ++RT+
Sbjct: 590 CTPD-------AAVYRTM 600



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 131/292 (44%), Gaps = 52/292 (17%)

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
           K G  +K    F  M+     PD + YN ++ V          K     AL ++   +  
Sbjct: 138 KMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLI-------QKNFLLLALTVYTRMMKL 190

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
           N      C P+V ++  +I+ LCK   V  A  LF +M  RGI+PD   Y  +I G C  
Sbjct: 191 N------CLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRS 244

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
            R+DDA +LF  ++  G  PD  + N L+N +  +++V+EA SL                
Sbjct: 245 KRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSL---------------- 288

Query: 388 LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
                  R      + LD+  ++CL+ GL ++ R      L++K+     +P+V  YT+M
Sbjct: 289 ------LRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIM 342

Query: 448 ICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           + GL   G              K+R+   A+ELL++M +  V PD +  ++L
Sbjct: 343 MKGLAEAG--------------KVRD---ALELLNEMTESGVVPDTVCYNVL 377



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 22/165 (13%)

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           +K+ GI      +  LI  Y  MG  D A + F S+    C PD  +YN +++   +   
Sbjct: 117 LKNGGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQKNF 176

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
           +  AL++Y  M+ +   P                      ++  F+ L+DGLCKS  ++ 
Sbjct: 177 LLLALTVYTRMMKLNCLP----------------------NVATFSILIDGLCKSGNVKD 214

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           A  LF ++ + G  P+  TY V+I GLC    ++ AY L   M++
Sbjct: 215 ALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKD 259



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/359 (20%), Positives = 133/359 (37%), Gaps = 49/359 (13%)

Query: 51  TKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLS 110
           T ++K L+E  K     + DAL   N M      P    +N L+              L 
Sbjct: 340 TIMMKGLAEAGK-----VRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQ 394

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
             ++     P+  + +IL++  C+     DA      + +    P  VT   LI GLC  
Sbjct: 395 LEISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKT 454

Query: 171 GKFTEASGLFTK---------FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD 221
           G+  +A  LF K         F+     P+ + +      +++ LC  G ++K   + + 
Sbjct: 455 GQLEKAHLLFYKMEIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQ 514

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDA---------KGNTSAALELHEEFVNG----- 267
           +   G  P  + YN L+  +C   N+  A         KG +   +  +   +NG     
Sbjct: 515 LADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVT-YGTLINGLLRFQ 573

Query: 268 --------------NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
                         NG     C PD   Y +++  +C+ + + +A  L+L    R I   
Sbjct: 574 REEDAYKVFDQMEKNG-----CTPDAAVYRTMMTWMCRRMELPRAFSLWLKY-LRNIRSQ 627

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
                  I+GY     ++ A +  + ++ +    D   Y   +    +  +V EAL ++
Sbjct: 628 EDEAIKAIEGYFEKQEVEKAVRGLLEMDFKLNDFDLGPYAIWLIGLCQTRRVGEALKIF 686


>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 754

 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 165/351 (47%), Gaps = 32/351 (9%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           + +   GL  D V+   L+N  C+   + +A   L  +  K    D VT   LI G C  
Sbjct: 379 DEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKV 438

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           GK TEA  +  K V    +  V PNV+ Y ++ DGLCK G V     L  +M  +G+  +
Sbjct: 439 GKMTEAFLVHNKMV----QKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELN 494

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
            F YNSLI   C A N E A       +++ E  +           PDV +Y +II +LC
Sbjct: 495 IFTYNSLINGLCKAGNLEQA---MRTMIDMDEAGLK----------PDVYTYTTIIGALC 541

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           +   +D+A  L  +M  +GI P +V Y+ L++G+C+ GR++  ++L   +  +   P+T+
Sbjct: 542 QSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTT 601

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTL 397
           +YN+L+  Y   + ++    +Y  M+S  V P+ +              + EA      +
Sbjct: 602 TYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEM 661

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL--PRYGPEPNVVTYTV 446
               F L  + +N L+  L K  +   A  LF+K+   R   EP+V  + +
Sbjct: 662 IEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYI 712



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 154/321 (47%), Gaps = 33/321 (10%)

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           L++ LC  G+  +A  LF +  +        P+V+ Y  ++ G C    +     L  +M
Sbjct: 259 LLKALCTAGRIKDAHQLFDEMAS-------PPDVVTYGIMVHGYCTLSELETAIKLLSEM 311

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
             RG+  +   Y S+I + C        +G  S A+ + E+ V      GV+   D   +
Sbjct: 312 AARGLELNPVAYTSVIALLC-------DEGQVSDAVRVVEDMVMH----GVVL--DAAVF 358

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
            ++++  C+   +  A+  F +M+ RG+  D V Y++LI+G C  G + +A ++   +E 
Sbjct: 359 TTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMED 418

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC----ILE 389
           +G   D  +Y  LI+ Y K+ K+ EA  ++ +M+   V P         D  C    +  
Sbjct: 419 KGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCA 478

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
           A EL   + +   EL++  +N L++GLCK+  L  A      +   G +P+V TYT +I 
Sbjct: 479 ANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIG 538

Query: 450 GLCIEGGIEKAYDLLPDMEEK 470
            LC    +++A+ LL +M +K
Sbjct: 539 ALCQSKELDRAHSLLQEMLDK 559



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 167/362 (46%), Gaps = 37/362 (10%)

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           S NIL+   C    + DA      +      PDVVT G ++ G C   +   A  L ++ 
Sbjct: 255 SYNILLKALCTAGRIKDAHQLFDEM---ASPPDVVTYGIMVHGYCTLSELETAIKLLSEM 311

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
            A      +  N + Y S+I  LC +G V+    +  DM   G+  DA V+ +++  +C 
Sbjct: 312 AAR----GLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFC- 366

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                  KG+ +AA    +E      + G+    D ++Y ++IN LC+   + +A+ +  
Sbjct: 367 ------RKGDLAAARNWFDEM----QKRGLAA--DGVTYTALINGLCRAGELKEAERVLQ 414

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
           +M+ +G+  D V Y+ LIDGYC +G++ +A  +   +  +   P+  +Y  L +   K  
Sbjct: 415 EMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQG 474

Query: 364 KVEEALSLYGEMISMGVRPD----NSCI--------LEAAELFRTL---HNTKFELDLTV 408
            V  A  L  EM S G+  +    NS I        LE A   RT+        + D+  
Sbjct: 475 DVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQA--MRTMIDMDEAGLKPDVYT 532

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +  ++  LC+S  L  A  L +++   G +P +VTY V++ G C+ G +E    LL  M 
Sbjct: 533 YTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWML 592

Query: 469 EK 470
           EK
Sbjct: 593 EK 594



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 175/386 (45%), Gaps = 39/386 (10%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V+  I+++ +C +  +  A   L  +  +    + V    +I  LC +G+ ++A  +
Sbjct: 283 PDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRV 342

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
               V       V+ +   + +++ G C+ G +   R  F +M+ RG+  D   Y +LI 
Sbjct: 343 VEDMVMH----GVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALIN 398

Query: 240 VYCCAVNWEDA---------KGNTSAAL-------------ELHEEFVNGNGELGVICHP 277
             C A   ++A         KG    A+             ++ E F+  N  +     P
Sbjct: 399 GLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTP 458

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           +V++Y ++ + LCK   V  A EL  +M S+G+  ++  Y+SLI+G C  G ++ A +  
Sbjct: 459 NVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTM 518

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSCIL 388
           + ++  G  PD  +Y T+I +  + ++++ A SL  EM+  G++P         +  C+ 
Sbjct: 519 IDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMS 578

Query: 389 EAAELFRTLHNTKFELDL----TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
              E  + L     E ++    T +N L+   C    ++S  E++K +      PN  TY
Sbjct: 579 GRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTY 638

Query: 445 TVMICGLCIEGGIEKAYDLLPDMEEK 470
            ++I G C    +++A     +M EK
Sbjct: 639 NILIKGHCKARNMKEALYFHSEMIEK 664



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 131/322 (40%), Gaps = 55/322 (17%)

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           N   Y  ++  LC  G +     LF +M      PD   Y  ++  YC     E      
Sbjct: 252 NTCSYNILLKALCTAGRIKDAHQLFDEMASP---PDVVTYGIMVHGYCTLSELE------ 302

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
             A++L  E      EL  +      +Y S+I  LC +  V  A  +  DM   G++ D 
Sbjct: 303 -TAIKLLSEMAARGLELNPV------AYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDA 355

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
            V+++++ G+C  G +  AR  F  ++  G   D  +Y  LIN   +  +++EA  +  E
Sbjct: 356 AVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQE 415

Query: 375 MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
           M   G+                      ++D   +  L+DG CK  ++  A+ +  K+ +
Sbjct: 416 MEDKGL----------------------DVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQ 453

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEI 494
               PNVVTYT +  GLC +G +                   A ELLH+M  + ++ +  
Sbjct: 454 KRVTPNVVTYTALSDGLCKQGDV-----------------CAANELLHEMCSKGLELNIF 496

Query: 495 TVSILEELLNKDENCHECMNLL 516
           T + L   L K  N  + M  +
Sbjct: 497 TYNSLINGLCKAGNLEQAMRTM 518



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 131/319 (41%), Gaps = 61/319 (19%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL  D V+  +L++ +CK+  +++AF+   ++++K  +P+VVT   L  GLC QG    A
Sbjct: 420 GLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAA 479

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
           + L  +     C   +  N+  Y S+I+GLCK G + +     +DM   G+ PD + Y +
Sbjct: 480 NELLHEM----CSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTT 535

Query: 237 LIRVYCCAVNWEDAKGNTSAALE--LHEEFVNGNGELGVIC------------------- 275
           +I   C +   + A       L+  +    V  N  +   C                   
Sbjct: 536 IIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKN 595

Query: 276 -HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM------- 327
            HP+  +Y S++   C +  +    E++  M S+ ++P+   Y+ LI G+C         
Sbjct: 596 IHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEAL 655

Query: 328 ----------------------------GRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
                                        +  +AR+LF  +  E    +   YN  I+  
Sbjct: 656 YFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYIDLS 715

Query: 360 SKIEKVEEALSLYGEMISM 378
              + +E  L+L  E++ +
Sbjct: 716 FNEDNLESTLALCDELVEV 734



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 94/234 (40%), Gaps = 17/234 (7%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++NSL+  L         +     ++  GL PD  +   ++   C+   +  A   L  +
Sbjct: 497 TYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEM 556

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
           L K   P +VT   L+ G CM G+      L    +      N+ PN   Y S++   C 
Sbjct: 557 LDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWML----EKNIHPNTTTYNSLMKQYCI 612

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           +  +     ++  M  + + P+   YN LI+ +C A N ++       AL  H E +   
Sbjct: 613 EKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKE-------ALYFHSEMIEKG 665

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
             L         SY ++I  L K     +A+ LF  M+   +  +  VY+  ID
Sbjct: 666 FRLTAS------SYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYID 713



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 7/166 (4%)

Query: 78  MIHMQPTPFMP---SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           MI M      P   ++ +++GAL   K       L + +   G+ P  V+ N+LMN FC 
Sbjct: 518 MIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCM 577

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
              V      L  +L K   P+  T   L++  C++      + ++   ++ +    V+P
Sbjct: 578 SGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQE----VVP 633

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
           N   Y  +I G CK   + +      +M  +G    A  YN+LIR+
Sbjct: 634 NENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRL 679


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 101/355 (28%), Positives = 168/355 (47%), Gaps = 51/355 (14%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFS-----PDVVTLGCLIRGLCMQGKFT 174
           PD VS   L+N  CK+  V  AF     + RK+ +     P+  T   L+ GLC Q +  
Sbjct: 94  PDVVSYTTLINGLCKLGRVDAAF----DLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLD 149

Query: 175 EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVY 234
            A  + T+    D      P+V+ Y +++  L + G V++    F  M   G  P    +
Sbjct: 150 AARAVITEARKRD----FAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSF 205

Query: 235 NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294
           N++I   C A    DA       LE+  E ++ +       HP++++Y  +I+ LCK   
Sbjct: 206 NAIITGLCRARRLADA-------LEVFNEMIDRD------FHPNLVTYSVVIDGLCKSDQ 252

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           +D+A++L   M S G  PD+V Y+ L+ G+   GR+D A  L   + S+GCIPD  +Y  
Sbjct: 253 LDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTV 312

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           +I+   K+ +V+                      +A E+FR L   K   ++  ++ L+ 
Sbjct: 313 VIDKLCKVGRVD----------------------DAHEIFRELVANKCSPNVVTYSALIG 350

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           G C++ R+    ++ +++      PNVVTY  MI GL +    E+AY +  +M E
Sbjct: 351 GYCRASRVDEGGKVMREM---ACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSE 402



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 152/338 (44%), Gaps = 50/338 (14%)

Query: 78  MIHMQPTPFMPSFNSLLGALAG-KKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMI 136
           + H QP   + S+ +L+  L    +    F    + +   G  P+  + N L++  CK  
Sbjct: 89  LAHAQPD--VVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQD 146

Query: 137 GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK---------FVAFD 187
            +  A   +    ++ F+PDVVT   L+  L   G+  EA   FT+          V+F+
Sbjct: 147 RLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFN 206

Query: 188 ------CRPNVI----------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225
                 CR   +                PN++ Y+ +IDGLCK   +++ + L   M   
Sbjct: 207 AIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSE 266

Query: 226 GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSI 285
           G  PD   Y  L+  +        A G   +AL L    V+        C PDV++Y  +
Sbjct: 267 GCRPDLVAYTPLVLGF-------SAAGRLDSALGLLRRMVSQG------CIPDVVTYTVV 313

Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
           I+ LCK   VD A E+F ++ +    P+VV YS+LI GYC   R+D+  K+   +    C
Sbjct: 314 IDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKV---MREMAC 370

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            P+  +YNT+I   S +++ EEA  ++ EM   G  PD
Sbjct: 371 RPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPD 408



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 130/287 (45%), Gaps = 20/287 (6%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
            P + ++N+L+ AL         +    ++   G +P  VS N ++   C+   ++DA  
Sbjct: 164 APDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALE 223

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
               ++ + F P++VT   +I GLC   +  EA  L  + V+  CRP+++     Y  ++
Sbjct: 224 VFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVA----YTPLV 279

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
            G    G ++    L   M  +G  PD   Y  +I   C     +DA        E+  E
Sbjct: 280 LGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAH-------EIFRE 332

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
            V         C P+V++Y ++I   C+   VD+  ++  +M  R   P+VV Y+++I G
Sbjct: 333 LVANK------CSPNVVTYSALIGGYCRASRVDEGGKVMREMACR---PNVVTYNTMIWG 383

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
             ++ R ++A  +F  +   G +PD  +Y  L  +   I++    L+
Sbjct: 384 LSMVDRNEEAYGMFREMSECGFVPDARTYRGLKRALRMIDQPPHVLT 430



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 111/262 (42%), Gaps = 42/262 (16%)

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF-V 338
           ++Y  +I   C    +D A  L  +M   G+  +    S ++ G C  GR+  A + F  
Sbjct: 26  VTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFDA 85

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG-VRPDNSCILEAAELFRTL 397
           S+E     PD  SY TLIN   K+ +V+ A  L+ +M++ G  RP+              
Sbjct: 86  SLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNA------------- 132

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                      +N LVDGLCK  RL +A  +  +  +    P+VVTY  ++  L   G +
Sbjct: 133 ---------FTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRV 183

Query: 458 EKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           ++A      M E                  + R    A+E+ ++M  R   P+ +T S++
Sbjct: 184 DEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVV 243

Query: 500 EELLNKDENCHECMNLLPSFLS 521
            + L K +   E   LL   +S
Sbjct: 244 IDGLCKSDQLDEAQQLLDRMVS 265



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 7/174 (4%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L++A    + M+     P + ++  L+   +      + + L  R+ + G +PD V+  
Sbjct: 252 QLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYT 311

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           ++++  CK+  V DA      ++    SP+VVT   LI G C   +  E   +  +    
Sbjct: 312 VVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMA-- 369

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            CRPNV+     Y ++I GL       +   +F +M   G  PDA  Y  L R 
Sbjct: 370 -CRPNVVT----YNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLKRA 418


>gi|356558657|ref|XP_003547620.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g55840-like [Glycine max]
          Length = 1078

 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 120/430 (27%), Positives = 198/430 (46%), Gaps = 55/430 (12%)

Query: 74  FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
           FF  M+     P + +FN LL AL  +  + N   L  ++   G+ P  V+ N L+N +C
Sbjct: 162 FFKGMLAKGICPDVATFNILLNALCERGKFKNAGFLLRKMEESGVYPTAVTYNTLLNWYC 221

Query: 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
           K      A   +  +  K    DV T    I  LC   +  +   L  +      R  V 
Sbjct: 222 KKGRYKAASQLIDCMASKGIGVDVCTYNVFIDNLCRDSRSAKGYLLLKRMR----RNMVY 277

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           PN I Y ++I G  ++G +     +F +M    + P++  YN+LI  +C         GN
Sbjct: 278 PNEITYNTLISGFVREGKIEVATKVFDEMSLFNLLPNSITYNTLIAGHC-------TTGN 330

Query: 254 TSAALELHEEFV---------------NG---NGELGVI-----------CHPDVLSYCS 284
              AL L +  V               NG   N E G++                +SY +
Sbjct: 331 IGEALRLMDVMVSHGLRPNEVTYGALLNGLYKNAEFGMVSSILERMRMGGVRVSHISYTA 390

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           +I+ LCK+ ++++A +L  DM    + PDVV +S LI+G+  +G+I++A+++   +   G
Sbjct: 391 MIDGLCKNGMLEEAVQLLDDMLKVSVNPDVVTFSVLINGFFRVGKINNAKEIMCKMYKTG 450

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN-SC-----------ILEAAE 392
            +P+   Y+TLI +Y K+  ++EAL+ Y  M   G   D+ +C            LE AE
Sbjct: 451 LVPNGILYSTLIYNYCKMGYLKEALNAYAVMNHSGHVADHFTCNVLVATFCRYGKLEEAE 510

Query: 393 LFRTLHNTKFELD--LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
            F   H ++  LD     F+C+++G   S     A+ +F K+  +G  P++ TY  ++ G
Sbjct: 511 YFMN-HMSRMGLDPNSVTFDCIINGYGNSGDALKAFSVFDKMNSFGHFPSLFTYGGLLKG 569

Query: 451 LCIEGGIEKA 460
           LCI G I +A
Sbjct: 570 LCIGGHINEA 579



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 176/388 (45%), Gaps = 35/388 (9%)

Query: 95  GALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFS 154
           G L   +Y++N       ++ +GL P+ V+ + ++N +        AF    ++      
Sbjct: 504 GKLEEAEYFMN------HMSRMGLDPNSVTFDCIINGYGNSGDALKAFSVFDKMNSFGHF 557

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
           P + T G L++GLC+ G   EA   F +     C PN + NVI + + +   C+ G ++ 
Sbjct: 558 PSLFTYGGLLKGLCIGGHINEALKFFHRL---RCIPNAVDNVI-FNTKLTSTCRSGNLSD 613

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
              L  +M      PD F Y +LI   C        KG   AAL L  + +    E G++
Sbjct: 614 AIALINEMVTNDFLPDNFTYTNLIAGLC-------KKGKIVAALLLSGKAI----EKGLL 662

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
             P+   Y S+++ L K      A  +F +M ++ + PD V ++ +ID Y   G+     
Sbjct: 663 S-PNPAVYTSLVDGLLKHGHARAALYIFEEMLNKDVEPDTVAFNVIIDQYSRKGKTSKVN 721

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCILE- 389
            +  +++S+    + ++YN L++ Y+K   +     LY +MI  G  PD    +S IL  
Sbjct: 722 DILSTMKSKNLCFNLATYNILLHGYAKRHAMARCFMLYKDMIRHGFLPDKFSWHSLILGY 781

Query: 390 --------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
                   A ++ R +      +D   FN L+   C+   ++ A+EL K++ ++   PNV
Sbjct: 782 CQSKSFDVAIKILRWITLEGHVIDRFTFNMLITKFCERNEMKKAFELVKQMNQFMVIPNV 841

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDMEE 469
            TY  +  GL       KA+ +L  + E
Sbjct: 842 DTYNALFNGLIRTSDFHKAHRVLQVLLE 869



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 114/444 (25%), Positives = 189/444 (42%), Gaps = 39/444 (8%)

Query: 42   NSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKK 101
            N+V  V   TKL    +   +SG   L+DA+   N M+     P   ++ +L+  L  K 
Sbjct: 591  NAVDNVIFNTKL----TSTCRSGN--LSDAIALINEMVTNDFLPDNFTYTNLIAGLCKKG 644

Query: 102  YYVNFICLSERLNTIGLL-PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTL 160
              V  + LS +    GLL P+      L++   K      A      +L K   PD V  
Sbjct: 645  KIVAALLLSGKAIEKGLLSPNPAVYTSLVDGLLKHGHARAALYIFEEMLNKDVEPDTVAF 704

Query: 161  GCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFL 220
              +I     +GK ++ + + +   +     N+  N+  Y  ++ G  K   + +  +L+ 
Sbjct: 705  NVIIDQYSRKGKTSKVNDILSTMKS----KNLCFNLATYNILLHGYAKRHAMARCFMLYK 760

Query: 221  DMKGRGIYPDAFVYNSLIRVYCCAVNWEDA-KGNTSAALELHEEFVNGNGELGVICHPDV 279
            DM   G  PD F ++SLI  YC + +++ A K      LE H           VI   D 
Sbjct: 761  DMIRHGFLPDKFSWHSLILGYCQSKSFDVAIKILRWITLEGH-----------VI---DR 806

Query: 280  LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
             ++  +I   C+   + KA EL   M    +IP+V  Y++L +G         A ++   
Sbjct: 807  FTFNMLITKFCERNEMKKAFELVKQMNQFMVIPNVDTYNALFNGLIRTSDFHKAHRVLQV 866

Query: 340  IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---SCILEAAELFRT 396
            +   G +P    Y TLIN   ++  ++ A+ L  EM ++G+   N   S I+      + 
Sbjct: 867  LLESGSVPTNKQYITLINGMCRVGNIKGAMKLQDEMKTLGISSHNVAMSAIVRGLANSKK 926

Query: 397  LHNTKFELDL----------TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTV 446
            + N  + LDL            F  L+   CK   +  A EL   +     + +VV Y V
Sbjct: 927  IENAIWVLDLMLEMQIIPTVATFTTLMHVYCKEANVAKALELRSIMEHCHVKLDVVAYNV 986

Query: 447  MICGLCIEGGIEKAYDLLPDMEEK 470
            +I GLC  G IE A+ L  +M+++
Sbjct: 987  LISGLCANGDIEAAFKLYEEMKQR 1010



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 106/477 (22%), Positives = 177/477 (37%), Gaps = 113/477 (23%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           + +AL   + M+     P   ++ +LL  L     +     + ER+   G+    +S   
Sbjct: 331 IGEALRLMDVMVSHGLRPNEVTYGALLNGLYKNAEFGMVSSILERMRMGGVRVSHISYTA 390

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           +++  CK   + +A   L  +L+   +PDVVT   LI G    GK   A  +  K     
Sbjct: 391 MIDGLCKNGMLEEAVQLLDDMLKVSVNPDVVTFSVLINGFFRVGKINNAKEIMCKMY--- 447

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            +  ++PN I Y+++I   CK G++ +    +  M   G   D F  N L+  +C     
Sbjct: 448 -KTGLVPNGILYSTLIYNYCKMGYLKEALNAYAVMNHSGHVADHFTCNVLVATFCRYGKL 506

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           E+A                                                 E F++  S
Sbjct: 507 EEA-------------------------------------------------EYFMNHMS 517

Query: 308 R-GIIPDVVVYSSLIDGY-----------------------------------CLMGRID 331
           R G+ P+ V +  +I+GY                                   C+ G I+
Sbjct: 518 RMGLDPNSVTFDCIINGYGNSGDALKAFSVFDKMNSFGHFPSLFTYGGLLKGLCIGGHIN 577

Query: 332 DARKLFVSIESEGCIP---DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI- 387
           +A K F  +    CIP   D   +NT + S  +   + +A++L  EM++    PDN    
Sbjct: 578 EALKFFHRLR---CIPNAVDNVIFNTKLTSTCRSGNLSDAIALINEMVTNDFLPDNFTYT 634

Query: 388 -----------LEAAELF--RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
                      + AA L   + +       +  V+  LVDGL K    R+A  +F+++  
Sbjct: 635 NLIAGLCKKGKIVAALLLSGKAIEKGLLSPNPAVYTSLVDGLLKHGHARAALYIFEEMLN 694

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIE---LLHKMAKRY 488
              EP+ V + V+I     +G   K  D+L  M+ K   C        LLH  AKR+
Sbjct: 695 KDVEPDTVAFNVIIDQYSRKGKTSKVNDILSTMKSK-NLCFNLATYNILLHGYAKRH 750



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 108/252 (42%), Gaps = 46/252 (18%)

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
           +P V +   ++ SL K+  VD     F  M ++GI PDV  ++ L++  C  G+  +A  
Sbjct: 137 NPSVYTCNMVLGSLVKEQKVDMFWSFFKGMLAKGICPDVATFNILLNALCERGKFKNAGF 196

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395
           L   +E  G  P   +YNTL+N Y K  + + A  L   M S G+               
Sbjct: 197 LLRKMEESGVYPTAVTYNTLLNWYCKKGRYKAASQLIDCMASKGI--------------- 241

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
                   +D+  +N  +D LC+  R    + L K++ R    PN +TY  +I G   EG
Sbjct: 242 -------GVDVCTYNVFIDNLCRDSRSAKGYLLLKRMRRNMVYPNEITYNTLISGFVREG 294

Query: 456 GIEKA---------YDLLPD------------MEEKIRECLKAIELLHKMAKRYVKPDEI 494
            IE A         ++LLP+                I E L+ +++   M    ++P+E+
Sbjct: 295 KIEVATKVFDEMSLFNLLPNSITYNTLIAGHCTTGNIGEALRLMDV---MVSHGLRPNEV 351

Query: 495 TVSILEELLNKD 506
           T   L   L K+
Sbjct: 352 TYGALLNGLYKN 363



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 129/291 (44%), Gaps = 19/291 (6%)

Query: 71   ALCFFNY--MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
            A CF  Y  MI     P   S++SL+      K +   I +   +   G + D  + N+L
Sbjct: 753  ARCFMLYKDMIRHGFLPDKFSWHSLILGYCQSKSFDVAIKILRWITLEGHVIDRFTFNML 812

Query: 129  MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
            +  FC+   +  AF  + ++ + +  P+V T   L  GL     F +A  +    +    
Sbjct: 813  ITKFCERNEMKKAFELVKQMNQFMVIPNVDTYNALFNGLIRTSDFHKAHRVLQVLL---- 868

Query: 189  RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
                +P    Y ++I+G+C+ G +     L  +MK  GI       ++++R    +   E
Sbjct: 869  ESGSVPTNKQYITLINGMCRVGNIKGAMKLQDEMKTLGISSHNVAMSAIVRGLANSKKIE 928

Query: 249  DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
            +A       LE+            +I  P V ++ ++++  CK+  V KA EL   M+  
Sbjct: 929  NAIWVLDLMLEMQ-----------II--PTVATFTTLMHVYCKEANVAKALELRSIMEHC 975

Query: 309  GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
             +  DVV Y+ LI G C  G I+ A KL+  ++     P+TS Y  LI+S+
Sbjct: 976  HVKLDVVAYNVLISGLCANGDIEAAFKLYEEMKQRDLWPNTSIYIVLIDSF 1026


>gi|357155349|ref|XP_003577091.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Brachypodium distachyon]
          Length = 877

 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 106/398 (26%), Positives = 175/398 (43%), Gaps = 66/398 (16%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + ++ +L+  L  K        L   +    L P+    N +++  CK    S A V 
Sbjct: 327 PTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLPPNVQIYNSVIDALCKCRSASQALVV 386

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNV------------ 192
           L ++      PD +T   LI GLC +G+  EA  L  +   ++  PN+            
Sbjct: 387 LKQMFAGGCDPDAITFSTLISGLCQEGRVQEAERLLRETTRWELNPNLSSYTSLIHGFCV 446

Query: 193 -------------------IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233
                               P+V+ + ++I GL   G V++  ++   M  R + PDA +
Sbjct: 447 RGEVIVASNLLVEMMERGHTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANI 506

Query: 234 YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDV 293
           YN LI   C        K    AA  L EE +  N       HPD   Y ++I+   ++ 
Sbjct: 507 YNVLISGLC-------KKKMLPAARNLIEEMLEQN------VHPDKYVYTTLIDGFIRNE 553

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353
            +D+A+++F  M+ +GI PDVV Y+++I GYC  G +++A +   ++   G IPD  +Y 
Sbjct: 554 SLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDEFTYT 613

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLV 413
           TLI  Y+K   +  ALSL  +M+    +P                      ++  ++ L+
Sbjct: 614 TLIGGYAKQGNISGALSLLCDMMKRRCQP----------------------NVVAYSSLI 651

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
           +G CK     +A  LF  +   G  PNV+TYT++I  L
Sbjct: 652 NGYCKLGDTDAAECLFGSMESQGLFPNVITYTILIGSL 689



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 165/367 (44%), Gaps = 30/367 (8%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G +P+ V  N+L++ +C+   V    + LG +  K   P VVT G L+  L  +G   + 
Sbjct: 289 GCVPNAVFYNVLIDGYCRRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKI 348

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
           + L ++         + PNV  Y S+ID LCK    ++  V+   M   G  PDA  +++
Sbjct: 349 ASLLSEMR----ERRLPPNVQIYNSVIDALCKCRSASQALVVLKQMFAGGCDPDAITFST 404

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI   C        +G    A  L  E            +P++ SY S+I+  C    V 
Sbjct: 405 LISGLC-------QEGRVQEAERLLRETTRWE------LNPNLSSYTSLIHGFCVRGEVI 451

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A  L ++M  RG  PDVV + +LI G  + G++ +A  +   + +   +PD + YN LI
Sbjct: 452 VASNLLVEMMERGHTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLI 511

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFE 403
           +   K + +  A +L  EM+   V PD             N  + EA ++F  +      
Sbjct: 512 SGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIH 571

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D+  +N ++ G C+   +  A E    + + G  P+  TYT +I G   +G I  A  L
Sbjct: 572 PDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGYAKQGNISGALSL 631

Query: 464 LPDMEEK 470
           L DM ++
Sbjct: 632 LCDMMKR 638



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 107/410 (26%), Positives = 180/410 (43%), Gaps = 45/410 (10%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + S+ SL+     +   +    L   +   G  PD V+   L++       VS+A + 
Sbjct: 432 PNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHTPDVVTFGALIHGLVVAGQVSEALLV 491

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
             ++  +   PD      LI GLC +     A  L  + +      NV P+   Y ++ID
Sbjct: 492 REKMAARQLLPDANIYNVLISGLCKKKMLPAARNLIEEML----EQNVHPDKYVYTTLID 547

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           G  ++  +++ R +F  M+ +GI+PD   YN++I+ YC         G  + A+E     
Sbjct: 548 GFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYC-------QFGMMNEAVECMSTM 600

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
                ++G I  PD  +Y ++I    K   +  A  L  DM  R   P+VV YSSLI+GY
Sbjct: 601 R----KVGRI--PDEFTYTTLIGGYAKQGNISGALSLLCDMMKRRCQPNVVAYSSLINGY 654

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           C +G  D A  LF S+ES+G  P+  +Y  LI S  K +KV  A   +  M+     P++
Sbjct: 655 CKLGDTDAAECLFGSMESQGLFPNVITYTILIGSLFKKDKVVRAAMYFEYMLLNQCSPND 714

Query: 385 --------------SCILEAA--------------ELFRTLHNTKFELDLTVFNCLVDGL 416
                         + I+ +               ++FR L N + +   + +N ++  L
Sbjct: 715 YTLHSLVTGLCNSMASIISSHCSSTVNLHGKGALLDIFRALVNDRCDPRNSAYNAIIFSL 774

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
           C    L  A +L  K+   G +P+  T+  ++ G C  G   +   +LP+
Sbjct: 775 CIHNMLGEALDLKNKMANKGYKPDSATFLSLLYGFCSVGKSREWRTILPN 824



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 112/479 (23%), Positives = 194/479 (40%), Gaps = 81/479 (16%)

Query: 94  LGAL------AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGR 147
           LGAL      AG +     +C   R +  G LP     N L+    +     DA      
Sbjct: 191 LGALVATYADAGMEAKAAEMCQRAREHH-GTLPGATHTNRLLRLLVERRRWDDARKLYDE 249

Query: 148 ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI-------------- 193
           +L +    D  +   ++RGLC++G   +   L        C PN +              
Sbjct: 250 MLAEESGADDYSTCVMVRGLCLEGLVEKGLKLIEARWGAGCVPNAVFYNVLIDGYCRRGD 309

Query: 194 -----------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
                            P V+ Y +++  L + G + K+  L  +M+ R + P+  +YNS
Sbjct: 310 VGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLPPNVQIYNS 369

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           +I   C        +  + A + L + F  G       C PD +++ ++I+ LC++  V 
Sbjct: 370 VIDALC------KCRSASQALVVLKQMFAGG-------CDPDAITFSTLISGLCQEGRVQ 416

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A+ L  +     + P++  Y+SLI G+C+ G +  A  L V +   G  PD  ++  LI
Sbjct: 417 EAERLLRETTRWELNPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHTPDVVTFGALI 476

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSC------------ILEAAE-LFRTLHNTKFE 403
           +      +V EAL +  +M +  + PD +             +L AA  L   +      
Sbjct: 477 HGLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPAARNLIEEMLEQNVH 536

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D  V+  L+DG  ++  L  A ++F+ + + G  P+VV Y  MI G C  G + +A   
Sbjct: 537 PDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAV-- 594

Query: 464 LPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
                    EC+  +  + ++      PDE T + L     K  N    ++LL   + R
Sbjct: 595 ---------ECMSTMRKVGRI------PDEFTYTTLIGGYAKQGNISGALSLLCDMMKR 638



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 98/398 (24%), Positives = 170/398 (42%), Gaps = 46/398 (11%)

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           L+R L   G+F +A     + ++       +P   C  +++      G   K   +    
Sbjct: 156 LLRLLARAGRF-DAVDATLRDMSLAGAAAAVPTRACLGALVATYADAGMEAKAAEMCQRA 214

Query: 223 K-GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
           +   G  P A   N L+R+      W+DA+       +L++E +    E G     D  S
Sbjct: 215 REHHGTLPGATHTNRLLRLLVERRRWDDAR-------KLYDEMLAE--ESGA----DDYS 261

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
            C ++  LC + LV+K  +L       G +P+ V Y+ LIDGYC  G +     L   +E
Sbjct: 262 TCVMVRGLCLEGLVEKGLKLIEARWGAGCVPNAVFYNVLIDGYCRRGDVGRGILLLGEME 321

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCI---------L 388
           ++G +P   +Y TL++   +   +E+  SL  EM    + P+    NS I          
Sbjct: 322 AKGLLPTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLPPNVQIYNSVIDALCKCRSAS 381

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
           +A  + + +     + D   F+ L+ GLC+  R++ A  L ++  R+   PN+ +YT +I
Sbjct: 382 QALVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQEAERLLRETTRWELNPNLSSYTSLI 441

Query: 449 CGLCIEGGIEKAYDLLPDMEEK------------------IRECLKAIELLHKMAKRYVK 490
            G C+ G +  A +LL +M E+                    +  +A+ +  KMA R + 
Sbjct: 442 HGFCVRGEVIVASNLLVEMMERGHTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQLL 501

Query: 491 PDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESK 528
           PD    ++L   L K +      NL+   L +N    K
Sbjct: 502 PDANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPDK 539



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 149/363 (41%), Gaps = 41/363 (11%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++++AL     M   Q  P    +N L+  L  KK       L E +    + PD     
Sbjct: 484 QVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYT 543

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ F +   + +A      + +K   PDVV    +I+G C  G   EA    +     
Sbjct: 544 TLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMR-- 601

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             +   IP+   Y ++I G  K G ++    L  DM  R   P+   Y+SLI  YC    
Sbjct: 602 --KVGRIPDEFTYTTLIGGYAKQGNISGALSLLCDMMKRRCQPNVVAYSSLINGYC---- 655

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G+T AA     E + G+ E   +  P+V++Y  +I SL K   V +A   F  M 
Sbjct: 656 ---KLGDTDAA-----ECLFGSMESQGL-FPNVITYTILIGSLFKKDKVVRAAMYFEYML 706

Query: 307 SRGIIPDVVVYSSLIDGYC-LMGRIDDAR--------------KLFVSIESEGCIPDTSS 351
                P+     SL+ G C  M  I  +                +F ++ ++ C P  S+
Sbjct: 707 LNQCSPNDYTLHSLVTGLCNSMASIISSHCSSTVNLHGKGALLDIFRALVNDRCDPRNSA 766

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS---------CILEAAELFRTLHNTKF 402
           YN +I S      + EAL L  +M + G +PD++         C +  +  +RT+   +F
Sbjct: 767 YNAIIFSLCIHNMLGEALDLKNKMANKGYKPDSATFLSLLYGFCSVGKSREWRTILPNEF 826

Query: 403 ELD 405
           + D
Sbjct: 827 QRD 829



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 121/292 (41%), Gaps = 53/292 (18%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFS-PDVVTLGCLIRGLCM 169
           E +   G+ PD V  N ++  +C+  G+ +  V     +RKV   PD  T   LI G   
Sbjct: 563 EFMEQKGIHPDVVGYNAMIKGYCQ-FGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGYAK 621

Query: 170 QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYP 229
           QG  + A  L    +   C+PNV+     Y+S+I+G CK G  +    LF  M+ +G++P
Sbjct: 622 QGNISGALSLLCDMMKRRCQPNVV----AYSSLINGYCKLGDTDAAECLFGSMESQGLFP 677

Query: 230 DAFVYNSLI-------RVYCCAVNWEDAKGNT---------------------------S 255
           +   Y  LI       +V   A+ +E    N                            S
Sbjct: 678 NVITYTILIGSLFKKDKVVRAAMYFEYMLLNQCSPNDYTLHSLVTGLCNSMASIISSHCS 737

Query: 256 AALELHEEFVNGNGELGVI--------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           + + LH     G G L  I        C P   +Y +II SLC   ++ +A +L   M +
Sbjct: 738 STVNLH-----GKGALLDIFRALVNDRCDPRNSAYNAIIFSLCIHNMLGEALDLKNKMAN 792

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           +G  PD   + SL+ G+C +G+  + R +  +      +   S Y  L + Y
Sbjct: 793 KGYKPDSATFLSLLYGFCSVGKSREWRTILPNEFQRDELEVASRYKILFDQY 844


>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
          Length = 1603

 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 125/462 (27%), Positives = 200/462 (43%), Gaps = 53/462 (11%)

Query: 72   LCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131
            L  F  M      P +   N +L  L     + +   + E +  +G+ P  V+ N L++ 
Sbjct: 1069 LSAFREMASHGVAPDVKDCNRVLRVLRDAARWDDICAVHEEMLELGIEPSIVTYNTLLDS 1128

Query: 132  FCKMIGVSDAFVALGRILRKVFS---PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
            F K  G  D    L + +    S   P+ VT   +I GL  +G   EA+ L         
Sbjct: 1129 FLKE-GRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGM----- 1182

Query: 189  RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
            R +   +   Y  +I GL   G V KV  L L+M+  GI P    YN++I          
Sbjct: 1183 RLSKKASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLL------ 1236

Query: 249  DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
                  S  +E  +        +G++  PDV++Y S++N  CK   + +A  LF D++  
Sbjct: 1237 -----QSGLVEAAQVKFAEMRAMGLL--PDVITYNSLLNGYCKAGNLKEALLLFGDLRRA 1289

Query: 309  GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
            G+ P V+ Y+ LIDGYC +G +++AR L   +  +GC+P+  +Y  L+     +  +  A
Sbjct: 1290 GLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMA 1349

Query: 369  LSLYGEMISMGVRPD------NSC-------ILEAAELFRTLHNTKFELDLTVFNCLVDG 415
               + EM+S G++PD        C       I  A EL   L       D   +N L+ G
Sbjct: 1350 REFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLEGISSDTVTYNILIHG 1409

Query: 416  LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------ 469
            LCK+  L+ A EL  K+   G +P+ +TYT +I   C  G + +A  +  +M        
Sbjct: 1410 LCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPS 1469

Query: 470  ------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                        +      A     KM +  V+P+EIT ++L
Sbjct: 1470 AVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVL 1511



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 173/409 (42%), Gaps = 65/409 (15%)

Query: 75   FNYMIHMQPTPFMPS---FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131
            ++  + M+    MP+   +N+++  L               +  +GLLPD ++ N L+N 
Sbjct: 1210 YDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNG 1269

Query: 132  FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
            +CK   + +A +  G + R   +P V+T   LI G C  G   EA  L  +     C   
Sbjct: 1270 YCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGC--- 1326

Query: 192  VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
             +PNV  Y  ++ G      +   R  F +M  +G+ PD F YN+ I    CA   E   
Sbjct: 1327 -LPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRI----CA---ELIL 1378

Query: 252  GNTSAALELHE---------EFVNGNGELGVIC--------------------HPDVLSY 282
            G+ + A EL E         + V  N  +  +C                     PD ++Y
Sbjct: 1379 GDIARAFELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITY 1438

Query: 283  CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
              +I++ C+  L+ +A+++F +M S G++P  V ++ +I  YC  G +  A   F  +  
Sbjct: 1439 TCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLE 1498

Query: 343  EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF 402
            EG  P+  +YN LI++  ++ + + A   + EM+  G+  +                   
Sbjct: 1499 EGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANK------------------ 1540

Query: 403  ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
                  +  L+DG CK      A   + ++ + G  P+ +T+  ++ G 
Sbjct: 1541 ----YTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALLKGF 1585


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 121/465 (26%), Positives = 210/465 (45%), Gaps = 48/465 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           + +AL  F  M      P +P++N L+  L  +      + + + +   GL P+ +++NI
Sbjct: 386 VEEALRIFEEM-KRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNI 444

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           +++  CK   + +A      +  KV +P+ VT   LI GL   G+  +A  L+ K +  D
Sbjct: 445 MIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKML--D 502

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C    +P  I Y S+I    K G       ++ +M   G  PD  + N+ +     A   
Sbjct: 503 C--GHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKA--- 557

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               G T     L  E +N +G +     PD  SY  +I+ L K  L ++  ELF  MK 
Sbjct: 558 ----GETEKGRALFRE-INAHGFI-----PDARSYSILIHGLVKAGLANETYELFYAMKE 607

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           +G + D   Y+++IDG+C  G+++ A +L   ++ +G  P   +Y ++I+  +KI++++E
Sbjct: 608 QGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDE 667

Query: 368 ALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDLTVFNCLVD 414
           A  L+ E  S G++ +                I EA  +   L       ++  +NCL+D
Sbjct: 668 AYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLD 727

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC 474
            L K+  +  A   F+ +      PN +TY+++I GLC                 ++R+ 
Sbjct: 728 ALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLC-----------------RVRKF 770

Query: 475 LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519
            KA     +M K  +KP+ IT + +   L K  N  E   L   F
Sbjct: 771 NKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRF 815



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/399 (27%), Positives = 182/399 (45%), Gaps = 41/399 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L +A   F  M     TP   +F+SL+  L       +   L E++   G +P  +   
Sbjct: 454 KLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYT 513

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+  F K     D       ++    SPD+  +   +  +   G+  +   LF +  A 
Sbjct: 514 SLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAH 573

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                 IP+   Y+ +I GL K G  N+   LF  MK +G   D   YN++I  +C    
Sbjct: 574 ----GFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFC---- 625

Query: 247 WEDAKGNTSAALELHEEF-VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
                G  + A +L EE  V G+        P V++Y S+I+ L K   +D+A  LF + 
Sbjct: 626 ---KSGKVNKAYQLLEEMKVKGH-------PPTVVTYGSVIDGLAKIDRLDEAYMLFEEA 675

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
           KS GI  +VVVYSSLIDG+  +GRID+A  +   +  +G  P+  ++N L+++  K E++
Sbjct: 676 KSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEI 735

Query: 366 EEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
            EAL  +  M  +   P+                         ++ L++GLC+  +   A
Sbjct: 736 NEALICFQSMKDLKCPPNQ----------------------ITYSILINGLCRVRKFNKA 773

Query: 426 WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           +  ++++ + G +PN +TYT MI GL   G I +A  L 
Sbjct: 774 FVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLF 812



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 109/373 (29%), Positives = 171/373 (45%), Gaps = 31/373 (8%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
             + + GL+PD V+   ++   CK   + +A     ++ +    P       +I G    
Sbjct: 289 HEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSA 348

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           GKF EA GL  +  A       IP+VI Y  I+  L K   V +   +F +MK R   P+
Sbjct: 349 GKFDEAYGLLERQKA----KGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMK-RDAVPN 403

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
              YN LI + C        +G  +AALE+ ++             P+VL+   +I+ LC
Sbjct: 404 VPTYNILIDMLC-------REGKLNAALEIRDDMERAG------LFPNVLTVNIMIDRLC 450

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K   +++A  +F  M  +   P+ V +SSLIDG    GR+DDA  L+  +   G +P   
Sbjct: 451 KAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAI 510

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS-------CILEAAE------LFRTL 397
            Y +LI S+ K  + E+   +Y EM+  G  PD +       C+ +A E      LFR +
Sbjct: 511 VYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREI 570

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
           +   F  D   ++ L+ GL K+      +ELF  +   G   +   Y  +I G C  G +
Sbjct: 571 NAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKV 630

Query: 458 EKAYDLLPDMEEK 470
            KAY LL +M+ K
Sbjct: 631 NKAYQLLEEMKVK 643



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 111/419 (26%), Positives = 194/419 (46%), Gaps = 33/419 (7%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
            K+G+V++  +  FF+ M      P   ++ S++G L         + L E+L     +P
Sbjct: 276 GKAGKVDM--SWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVP 333

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
              + N ++  +       +A+  L R   K   P V+   C++  L  + +  EA  +F
Sbjct: 334 CAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIF 393

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            +      + + +PNV  Y  +ID LC++G +N    +  DM+  G++P+    N +I  
Sbjct: 394 EEM-----KRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDR 448

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
            C A   E+A     +  E         G    +C P+ +++ S+I+ L K   VD A  
Sbjct: 449 LCKAQKLEEA----CSIFE---------GMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYS 495

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           L+  M   G +P  +VY+SLI  +   GR +D  K++  +   GC PD +  NT ++   
Sbjct: 496 LYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVF 555

Query: 361 KIEKVEEALSLYGEMISMGVRPD--NSCIL-----------EAAELFRTLHNTKFELDLT 407
           K  + E+  +L+ E+ + G  PD  +  IL           E  ELF  +      LD  
Sbjct: 556 KAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTH 615

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
            +N ++DG CKS ++  A++L +++   G  P VVTY  +I GL     +++AY L  +
Sbjct: 616 AYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEE 674



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 151/318 (47%), Gaps = 29/318 (9%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALA----GKKYYVNFICLSERLNTIG 117
           K+GE E   AL  F  +      P   S++ L+  L       + Y  F  + E+    G
Sbjct: 556 KAGETEKGRAL--FREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQ----G 609

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
            + D  + N +++ FCK   V+ A+  L  +  K   P VVT G +I GL    +  EA 
Sbjct: 610 CVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAY 669

Query: 178 GLFTKFVAFDCRPNVIP-NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
            LF      + + N I  NV+ Y+S+IDG  K G +++  ++  ++  +G+ P+ + +N 
Sbjct: 670 MLFE-----EAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNC 724

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           L+                  A E++E  +       + C P+ ++Y  +IN LC+    +
Sbjct: 725 LLDALV-------------KAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFN 771

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           KA   + +M+  G+ P+ + Y+++I G    G I +A  LF   ++ G IPD++SYN +I
Sbjct: 772 KAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMI 831

Query: 357 NSYSKIEKVEEALSLYGE 374
              S   K  +A +L+ E
Sbjct: 832 EGLSSANKAMDAYALFEE 849



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 115/464 (24%), Positives = 192/464 (41%), Gaps = 52/464 (11%)

Query: 34  NEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSL 93
           N PS +    V + +   K +   +E  + G   ++D  C       ++  P+ P+  + 
Sbjct: 32  NGPSEVDGKVVFSADGVDKKIPRNNEGIRKG---VDDVCCI------LESGPWGPTLENS 82

Query: 94  LGALAGKKYYVNFICLSERLNTIGLLPDF----------VSLNILMNCFCKMIGVSDAFV 143
           L AL  K      I + +RL       ++          V      N    ++  +  F 
Sbjct: 83  LSALGEKPLPELVIGVLKRLKDANTAVNYFQWAEKQTEKVHCPEAYNSLLMVMARNTEFD 142

Query: 144 ALGRILRKV----FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICY 199
            L RIL ++    F P       L+       K  EA  +      F  RP        Y
Sbjct: 143 HLERILEEMSLSGFGPSSNISIELVANCVKSRKLREAFDIIQTMRKFKFRPAFS----AY 198

Query: 200 ASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE 259
             +I  L +    + + +LF  M+  G   +  ++ +LIRV+         +G   AAL 
Sbjct: 199 TILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLIRVFA-------REGRVDAALS 251

Query: 260 LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSS 319
           L +E  + +         D++ Y   I+   K   VD + + F +MKS G++PD V Y+S
Sbjct: 252 LLDEMKSNS------LDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTS 305

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           +I   C   R+D+A +LF  +E    +P   +YNT+I  Y    K +EA  L     + G
Sbjct: 306 MIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKG 365

Query: 380 VRPD---NSCIL-------EAAELFRTLHNTKFEL--DLTVFNCLVDGLCKSWRLRSAWE 427
             P     +CIL          E  R     K +   ++  +N L+D LC+  +L +A E
Sbjct: 366 SIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCREGKLNAALE 425

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI 471
           +   + R G  PNV+T  +MI  LC    +E+A  +   M++K+
Sbjct: 426 IRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKV 469



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 103/418 (24%), Positives = 180/418 (43%), Gaps = 54/418 (12%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIGLLPDFVSL 125
           ++DA   +  M+     P    + SL+ +    G+K   + I   E ++T G  PD   +
Sbjct: 490 VDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKI-YKEMVHT-GCSPDLTLI 547

Query: 126 NILMNCFCKMIGVSDAFVALGR-ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
           N  M+C  K  G ++   AL R I    F PD  +   LI GL   G   E   LF    
Sbjct: 548 NTYMDCVFKA-GETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMK 606

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI------ 238
              C    + +   Y ++IDG CK G VNK   L  +MK +G  P    Y S+I      
Sbjct: 607 EQGC----VLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKI 662

Query: 239 -RVYCCAVNWEDAKGN-TSAALELHEEFVNGNGELGVI--------------CHPDVLSY 282
            R+    + +E+AK N     + ++   ++G G++G I                P+V ++
Sbjct: 663 DRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTW 722

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
             ++++L K   +++A   F  MK     P+ + YS LI+G C + + + A   +  ++ 
Sbjct: 723 NCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQK 782

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF 402
            G  P+T +Y T+I+  +K   + EA  L+    + G  PD++                 
Sbjct: 783 LGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSAS---------------- 826

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
                 +N +++GL  + +   A+ LF++    G   +  T  V++  L     +E+A
Sbjct: 827 ------YNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVLLDALHKAECLEQA 878



 Score = 40.0 bits (92), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 42/206 (20%), Positives = 86/206 (41%), Gaps = 32/206 (15%)

Query: 351 SYNTLI------NSYSKIEKVEEALSL--YGEMISMGVRPDNSCI-----LEAAELFRTL 397
           +YN+L+        +  +E++ E +SL  +G   ++ +    +C+      EA ++ +T+
Sbjct: 127 AYNSLLMVMARNTEFDHLERILEEMSLSGFGPSSNISIELVANCVKSRKLREAFDIIQTM 186

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
              KF    + +  L+  L +         LF ++   G E NV  +T +I     EG +
Sbjct: 187 RKFKFRPAFSAYTILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLIRVFAREGRV 246

Query: 458 EKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           + A  LL +M+                   K  +   + +  H+M    + PD++T + +
Sbjct: 247 DAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSM 306

Query: 500 EELLNKDENCHECMNLLPSFLSRNQE 525
             +L K     E + L    L +N++
Sbjct: 307 IGVLCKANRLDEAVELFEQ-LEQNRK 331


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 185/397 (46%), Gaps = 46/397 (11%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           ++  G  P+ V+ N L+N F K     D    L  +  +   P+VV+   L+ GLC   +
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLER 60

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
           + EA  L    ++   R    P+++ Y++++ G CK G V + R L  ++  RG+ PDA 
Sbjct: 61  WHEAEELVRDMISRGGRST--PDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDAL 118

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
           +Y  ++   C +    +A       +                C P ++++ ++I+  C++
Sbjct: 119 MYTKVMASLCKSARLGEALELLEEMIRAG-------------CCPTLITFNTLISGCCRE 165

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             ++ A  L   M + G+  DVV Y++L+DG C  GR+ +A +L   +++ GC PD  +Y
Sbjct: 166 KNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAY 225

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC----ILEAAELFRTLHN 399
           ++ +    K  KV  A  +  +M      P         D  C    I  A E+   + +
Sbjct: 226 SSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMAS 285

Query: 400 TKF-ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
           +    L++  ++ +VDGLCK  R + A  + + + R G  P+VVTY+ ++ GLC  G IE
Sbjct: 286 SDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIE 345

Query: 459 KAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEIT 495
                            +A+E + +MA    KP+ +T
Sbjct: 346 -----------------EAVEAVREMAMEGCKPNAVT 365



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 181/399 (45%), Gaps = 35/399 (8%)

Query: 57  LSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           LS   K+G+VE +  L        ++P   M  +  ++ +L         + L E +   
Sbjct: 89  LSGYCKAGKVEESRELLKEVISRGLRPDALM--YTKVMASLCKSARLGEALELLEEMIRA 146

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  P  ++ N L++  C+   +  A   L  +       DVVT   L+ GLC  G+  EA
Sbjct: 147 GCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEA 206

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L  +  A  C P+V+     Y+S + GLCK G V     +   M+     P+   YN+
Sbjct: 207 EQLLERMKASGCAPDVVA----YSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNT 262

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           ++   C         G    ALE+ E+  + +G     C  +V+ Y ++++ LCK     
Sbjct: 263 ILDGLC-------KSGKIDTALEMMEQMASSDG-----CGLNVVGYSTVVDGLCKLGRTQ 310

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A+ +   M   G  PDVV YSSL++G C  G+I++A +    +  EGC P+  +Y +L+
Sbjct: 311 EARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLV 370

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           +      ++ EA  +  EM S G   D+                     ++ +N L+ GL
Sbjct: 371 HGLCSCGRLAEAERMVEEMSSGGGGGDHC-----------------PPSVSTYNALIGGL 413

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
           CK+ R+  A + F+++   G +P+ V+Y+ ++ GL   G
Sbjct: 414 CKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSG 452



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 111/430 (25%), Positives = 185/430 (43%), Gaps = 62/430 (14%)

Query: 82  QPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDA 141
           + TP + ++++LL              L + + + GL PD +    +M   CK   + +A
Sbjct: 77  RSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASLCKSARLGEA 136

Query: 142 FVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYAS 201
              L  ++R    P ++T   LI G C +     A  L     A      V  +V+ Y +
Sbjct: 137 LELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAA----SGVKADVVTYNT 192

Query: 202 IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261
           ++DGLCK G + +   L   MK  G  PD   Y+S +   C         G    A ++ 
Sbjct: 193 LMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLC-------KSGKVLNAHQVL 245

Query: 262 EEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR-GIIPDVVVYSSL 320
           E+  + + +      P+V++Y +I++ LCK   +D A E+   M S  G   +VV YS++
Sbjct: 246 EQMRDSDHD------PNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTV 299

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           +DG C +GR  +AR +  ++   GC PD  +Y++L+N   K  K+EEA+    EM   G 
Sbjct: 300 VDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGC 359

Query: 381 RPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE-- 438
           +P+                         +  LV GLC   RL  A  + +++   G    
Sbjct: 360 KPN----------------------AVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGD 397

Query: 439 ---PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEIT 495
              P+V TY  +I GLC  G I+                  A++   +M  +   PD ++
Sbjct: 398 HCPPSVSTYNALIGGLCKAGRID-----------------DALKFFQRMRSQGCDPDGVS 440

Query: 496 VSILEELLNK 505
            S + E L +
Sbjct: 441 YSTIVEGLAR 450



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 143/328 (43%), Gaps = 50/328 (15%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           MI     P + +FN+L+     +K       L + +   G+  D V+ N LM+  CK   
Sbjct: 143 MIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGR 202

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP--- 194
           + +A   L R+     +PDVV     + GLC  GK   A  +  +    D  PNV+    
Sbjct: 203 LQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNT 262

Query: 195 -----------------------------NVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225
                                        NV+ Y++++DGLCK G   + R +   M   
Sbjct: 263 ILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARA 322

Query: 226 GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSI 285
           G  PD   Y+SL+   C A   E+A     A  E+  E           C P+ ++YCS+
Sbjct: 323 GCRPDVVTYSSLVNGLCKAGKIEEA---VEAVREMAMEG----------CKPNAVTYCSL 369

Query: 286 INSLCKDVLVDKAKELFLDMKSRGII-----PDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
           ++ LC    + +A+ +  +M S G       P V  Y++LI G C  GRIDDA K F  +
Sbjct: 370 VHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRM 429

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEA 368
            S+GC PD  SY+T++   ++  +  +A
Sbjct: 430 RSQGCDPDGVSYSTIVEGLARSGRALQA 457



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 160/343 (46%), Gaps = 43/343 (12%)

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
           R    PN + + ++++G  K G       L   M  RGI P+   YN L+   C    W 
Sbjct: 3   RTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWH 62

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
           +A+       EL  + ++  G       PD+++Y ++++  CK   V++++EL  ++ SR
Sbjct: 63  EAE-------ELVRDMISRGGR----STPDLVTYSTLLSGYCKAGKVEESRELLKEVISR 111

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G+ PD ++Y+ ++   C   R+ +A +L   +   GC P   ++NTLI+   + + +E A
Sbjct: 112 GLRPDALMYTKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMA 171

Query: 369 LSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDG 415
            SL   M + GV+ D                + EA +L   +  +    D+  ++  V G
Sbjct: 172 DSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYG 231

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------ 469
           LCKS ++ +A ++ +++     +PNVVTY  ++ GLC  G I+ A +++  M        
Sbjct: 232 LCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGL 291

Query: 470 -------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                        K+    +A  ++  MA+   +PD +T S L
Sbjct: 292 NVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSL 334



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 102/227 (44%), Gaps = 32/227 (14%)

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M   G  P+ V +++L++G+   GR  D  +L  ++ + G  P+  SYN L+    K+E+
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLER 60

Query: 365 VEEALSLYGEMISMGVR--PD---------NSC----ILEAAELFRTLHNTKFELDLTVF 409
             EA  L  +MIS G R  PD           C    + E+ EL + + +     D  ++
Sbjct: 61  WHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMY 120

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
             ++  LCKS RL  A EL +++ R G  P ++T+  +I G C E  +E A         
Sbjct: 121 TKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADS------- 173

Query: 470 KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                     LL  MA   VK D +T + L + L K     E   LL
Sbjct: 174 ----------LLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLL 210


>gi|414875530|tpg|DAA52661.1| TPA: hypothetical protein ZEAMMB73_467633 [Zea mays]
          Length = 987

 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 120/449 (26%), Positives = 184/449 (40%), Gaps = 85/449 (18%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GLLPD V+ N ++  +CK   ++ A      +       D  T   L+ G C      +A
Sbjct: 174 GLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKA 233

Query: 177 SGLFTKFVAFDCRPNVIP-------------------------------NVICYASIIDG 205
             L        CR N                                  N+  Y  +I G
Sbjct: 234 CWLLMMMPLMGCRRNEYSYTILIQGLYEARCVREALVLVFMMVQDGCSLNLHMYTLLIKG 293

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
           LCK+G ++  R L  +M  RG+ P  + YN++I  YC +   +DA G  +         +
Sbjct: 294 LCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKA--------LM 345

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
             NG     C+PD  +Y S+I  LC   L D+A+EL     +RG  P V+ +++LI+GYC
Sbjct: 346 EQNG-----CNPDDWTYNSLIYGLCGGKL-DEAEELLNGAIARGFTPTVITFTNLINGYC 399

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
              RIDDA ++  ++ S  C  D  +Y  LIN   K  +++EA     EM + G+ P   
Sbjct: 400 KAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAP--- 456

Query: 386 CILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
                              ++ ++  ++DG CK   + +A E+FK +   G  PN  TY 
Sbjct: 457 -------------------NVVIYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYG 497

Query: 446 VMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKR 487
            +I GL  +  + KA  L+  M+E                  K  E   A  L   M K 
Sbjct: 498 SLIYGLIQDKKLHKAMALITKMQEDGITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKN 557

Query: 488 YVKPDEITVSILEELLNKDENCHECMNLL 516
            + PDE   ++L + L K     E  + L
Sbjct: 558 GLTPDEQAYNVLTDALCKSGRAEEAYSFL 586



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 115/430 (26%), Positives = 189/430 (43%), Gaps = 64/430 (14%)

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           S  IL+    +   V +A V +  +++   S ++     LI+GLC +G+  +A GL  + 
Sbjct: 251 SYTILIQGLYEARCVREALVLVFMMVQDGCSLNLHMYTLLIKGLCKEGRIHDARGLLDEM 310

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
                   V+P+V  Y ++IDG CK G +     +   M+  G  PD + YNSLI   C 
Sbjct: 311 PL----RGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLCG 366

Query: 244 A--------VNWEDAKGNTSAALELHEEFVNGNGELGVI--------------CHPDVLS 281
                    +N   A+G T   +      +NG  +   I              C  D+ +
Sbjct: 367 GKLDEAEELLNGAIARGFTPTVITF-TNLINGYCKAERIDDALRVKSNMISSNCKLDLQA 425

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y  +IN L K   + +AKE   +M + G+ P+VV+Y+S+IDGYC +G +  A ++F  +E
Sbjct: 426 YGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVIYTSIIDGYCKVGMVGAALEVFKLME 485

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK 401
            EGC P+  +Y +LI    + +K+ +A++L  +M   G+ P                   
Sbjct: 486 HEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITP------------------- 526

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
               +  +  L+ G CK     +A+ LF+ + + G  P+   Y V+   LC  G  E+AY
Sbjct: 527 ---GVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKSGRAEEAY 583

Query: 462 DL---------------LPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
                            L D   K      A  L+ KM     K D  T S+L + L K 
Sbjct: 584 SFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQ 643

Query: 507 ENCHECMNLL 516
           +  +E +++L
Sbjct: 644 KKLNEALSIL 653



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 111/405 (27%), Positives = 168/405 (41%), Gaps = 64/405 (15%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL P+ V    +++ +CK+  V  A      +  +   P+  T G LI GL    K  +A
Sbjct: 453 GLAPNVVIYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKA 512

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L TK         + P VI Y ++I G CK    +    LF  M+  G+ PD   YN 
Sbjct: 513 MALITKMQ----EDGITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNV 568

Query: 237 LIRVYCCAVNWEDA-------------------------KGNTSAALELHEEFVNGNGEL 271
           L    C +   E+A                          GNT  A  L E+ VN     
Sbjct: 569 LTDALCKSGRAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEG--- 625

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
              C  D+ +Y  ++ +LCK   +++A  +   M   G+  ++V Y+ +I      G+ D
Sbjct: 626 ---CKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHD 682

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------- 383
            A+ LF  + S G  P  ++Y   I+SY KI ++EEA  L GEM   GV PD        
Sbjct: 683 HAKSLFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFI 742

Query: 384 NSC--ILEAAELFRTLHNT----------------KFELDLTVFNCL---VDGLCKSWRL 422
           N C  +      F TL                   K  L +++ N       G+     L
Sbjct: 743 NGCGHMGYMDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYIDTSGMWNWIEL 802

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            + W+L +++ ++G  P VVTY+ +I G C    +E+A  LL  M
Sbjct: 803 NTVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHM 847



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 109/475 (22%), Positives = 174/475 (36%), Gaps = 98/475 (20%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L+ A+     M     TP + ++ +L+     K  + N   L E +   GL PD  + N
Sbjct: 508 KLHKAMALITKMQEDGITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYN 567

Query: 127 ILMNCFCKMIGVSDAF---VALGRILRKV--------FS--------------------- 154
           +L +  CK     +A+   V  G +L KV        FS                     
Sbjct: 568 VLTDALCKSGRAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCK 627

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
            D+ T   L++ LC Q K  EA  +  +         V  N++ Y  II  + K+G  + 
Sbjct: 628 ADLYTYSVLLQALCKQKKLNEALSILDQMTV----SGVKCNIVAYTIIISEMIKEGKHDH 683

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK---------GNTSAALELHEEFV 265
            + LF +M   G  P A  Y   I  YC     E+A+         G T   +  H  F+
Sbjct: 684 AKSLFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYH-IFI 742

Query: 266 NGNGELGVI--------------CHPDVLSYCSIINSLCKDVLVDK-------------- 297
           NG G +G +              C P+  +Y  ++    K  L++               
Sbjct: 743 NGCGHMGYMDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYIDTSGMWNWIEL 802

Query: 298 --AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
               +L   M   G+ P VV YSS+I G+C   R+++A  L   +  +   P+   Y  L
Sbjct: 803 NTVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKAISPNEEIYTML 862

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDG 415
           I     I+   + +S   +MI  G +P                       L  ++ L+ G
Sbjct: 863 IKCCCDIKLFGKDVSFVTDMIEFGFQP----------------------QLESYHYLIVG 900

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           LC       A  LF  L       N V + ++  GL   G ++    LL  M+ +
Sbjct: 901 LCDEGDYDRAKSLFCDLLGMDYNHNEVAWKILNDGLLKAGHVDFCSQLLAAMDNR 955



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 13/197 (6%)

Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
           + SL +  + +   +L+  +   G++PD V Y+++I  YC  G +  A + F  +   G 
Sbjct: 151 LRSLLRFDMTEYMGKLYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGM 210

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN-------------SCILEAAE 392
             DT + N L+  Y +   + +A  L   M  MG R +               C+ EA  
Sbjct: 211 QMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLYEARCVREALV 270

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
           L   +      L+L ++  L+ GLCK  R+  A  L  ++P  G  P+V TY  MI G C
Sbjct: 271 LVFMMVQDGCSLNLHMYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYC 330

Query: 453 IEGGIEKAYDLLPDMEE 469
             G ++ A  +   ME+
Sbjct: 331 KSGRMKDALGIKALMEQ 347



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 130/315 (41%), Gaps = 29/315 (9%)

Query: 57  LSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           +SE  K G+ +   A   FN MI     P   ++   + +            L   +   
Sbjct: 672 ISEMIKEGKHD--HAKSLFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERD 729

Query: 117 GLLPDFVSLNILMNCFCKMIGVSD-AFVALGRILRKVFSPDVVTLGCLIRGLC----MQG 171
           G+ PD V+ +I +N  C  +G  D AF  L R++     P+  T   L++       +  
Sbjct: 730 GVTPDVVTYHIFING-CGHMGYMDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINA 788

Query: 172 KFTEASGLFT--------KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
            + + SG++         + +    +  + P V+ Y+SII G CK   + +  VL   M 
Sbjct: 789 HYIDTSGMWNWIELNTVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHML 848

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
           G+ I P+  +Y  LI+  CC +                  FV    E G    P + SY 
Sbjct: 849 GKAISPNEEIYTMLIKC-CCDIK----------LFGKDVSFVTDMIEFGF--QPQLESYH 895

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
            +I  LC +   D+AK LF D+       + V +  L DG    G +D   +L  ++++ 
Sbjct: 896 YLIVGLCDEGDYDRAKSLFCDLLGMDYNHNEVAWKILNDGLLKAGHVDFCSQLLAAMDNR 955

Query: 344 GCIPDTSSYNTLINS 358
            C  D+ SY+ L +S
Sbjct: 956 HCRIDSESYSMLTDS 970



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 96/399 (24%), Positives = 146/399 (36%), Gaps = 107/399 (26%)

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
           CY   +  L +      +  L+  +   G+ PD   YN++I  YC        KG+ + A
Sbjct: 146 CYNLALRSLLRFDMTEYMGKLYSHLVQEGLLPDTVTYNTMIMAYC-------KKGSLAIA 198

Query: 258 LELHEEFV----NGNGELGVICHPDVLSYCS----------------------------I 285
              H  F     +G       C+  +L YC                             +
Sbjct: 199 ---HRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTIL 255

Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
           I  L +   V +A  L   M   G   ++ +Y+ LI G C  GRI DAR L   +   G 
Sbjct: 256 IQGLYEARCVREALVLVFMMVQDGCSLNLHMYTLLIKGLCKEGRIHDARGLLDEMPLRGV 315

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCIL--------EAAEL 393
           +P   +YN +I+ Y K  ++++AL +   M   G  PD    NS I         EA EL
Sbjct: 316 VPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLCGGKLDEAEEL 375

Query: 394 ---------------FRTLHN--------------------TKFELDLTVFNCLVDGLCK 418
                          F  L N                    +  +LDL  +  L++ L K
Sbjct: 376 LNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIK 435

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE--------- 469
             RL+ A E   ++   G  PNVV YT +I G C  G +  A ++   ME          
Sbjct: 436 KCRLKEAKETLNEMFANGLAPNVVIYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWT 495

Query: 470 ---------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                    + ++  KA+ L+ KM +  + P  I  + L
Sbjct: 496 YGSLIYGLIQDKKLHKAMALITKMQEDGITPGVIAYTTL 534


>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
 gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
          Length = 658

 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 112/461 (24%), Positives = 215/461 (46%), Gaps = 64/461 (13%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A+  F  M   +  P   ++ +L+  L  ++     + L + + + G  P  V  N+
Sbjct: 203 VDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNV 262

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++  CK   +S     +  +  K   P+ VT   LI GLC++GK  +A  L  + V+  
Sbjct: 263 LIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSK 322

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C    IPN + Y ++I+GL K         L + M+ RG   +  +Y+ LI         
Sbjct: 323 C----IPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSVLISGLF----- 373

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
              +G    A+ L ++           C P+++ Y ++I+ LC++   ++AKE+   M S
Sbjct: 374 --KEGKAEEAMTLWKKMAEKG------CRPNIVVYSAVIDGLCREGKPNEAKEILNGMIS 425

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            G +P+V  YSSL+ G+   G  ++A +++  ++  GC  +   Y+ LI+    + +V+E
Sbjct: 426 SGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCGVGRVKE 485

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           A+ ++ +M+++G++PD                         ++ ++ GLC    + +A +
Sbjct: 486 AMMVWSKMLTIGIKPDT----------------------VAYSSMIKGLCGIGSMDAALK 523

Query: 428 LFKKL-----PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLH 482
           L+ ++     P+   +P+VVTY +++ GLC++  + +A D                 LL+
Sbjct: 524 LYHEMLCQEEPK--SQPDVVTYNILLDGLCMQKDVSRAVD-----------------LLN 564

Query: 483 KMAKRYVKPDEITV-SILEELLNKDENCHECMNLLPSFLSR 522
            M  R   PD IT  + L  L  K ++C E  + L   ++R
Sbjct: 565 CMLDRGCDPDVITCNTFLNTLSEKSDSCEEGRSFLEELVAR 605



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 146/308 (47%), Gaps = 29/308 (9%)

Query: 175 EASGLFTKFV-AFDCRPNVIP-NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
           +A  LF + V  F C+ +V   N +    I +GL   G      V+  +M    I P+  
Sbjct: 130 KAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMN-MNISPNGL 188

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            +N +I+  C         G    A+E+              C PD  +YC++++ LCK+
Sbjct: 189 SFNLVIKALC-------KLGFVDRAIEVFRGMPEKK------CLPDGYTYCTLMDGLCKE 235

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             +D+A  L  +M+S G  P  V+Y+ LIDG C  G +    KL  ++  +GC P+  +Y
Sbjct: 236 ERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTY 295

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHN 399
           NTLI+      K+++A+SL   M+S    P++                ++ A L  ++  
Sbjct: 296 NTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEE 355

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
             + L+  +++ L+ GL K  +   A  L+KK+   G  PN+V Y+ +I GLC EG   +
Sbjct: 356 RGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNE 415

Query: 460 AYDLLPDM 467
           A ++L  M
Sbjct: 416 AKEILNGM 423


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 117/429 (27%), Positives = 192/429 (44%), Gaps = 71/429 (16%)

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
            + NI++   C     + A      +LR++  P+ VT   +I G C +G+   A  +  +
Sbjct: 484 TTFNIMLRHLCSAGKPARAL----ELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMRE 539

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG-IYPDAFVYNSLIRVY 241
                 R  + PN   Y ++I G CK G V++   +F +M  +G + P+A +YN+LI  Y
Sbjct: 540 MRE---RGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGY 596

Query: 242 C------CAVNWEDAKGNTSAALEL-------HEEFVNGNG----EL-----GVICHPDV 279
           C       A+ + D       A+ +       H  F++G G    EL     G    PDV
Sbjct: 597 CDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDV 656

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
            +Y  +IN  CK+  V KA E+F +M  RG+   VV Y++LI      G++ +  KLF  
Sbjct: 657 FTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDE 716

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN 399
               G  PD   YN LINS+S    ++ A  + GEM    + PD+               
Sbjct: 717 AVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDD--------------- 761

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
                    +N L+ GLC   R+  A +L  ++   G +P++VTY  +I G  ++G ++ 
Sbjct: 762 -------VTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKD 814

Query: 460 AYDLLPDMEEK------------IRECLK------AIELLHKMAKRYVKPDEIT-VSILE 500
           A  +  +M  K            I+   K      A  ++ +M +  + PD+ T +S++E
Sbjct: 815 ALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIE 874

Query: 501 ELLNKDENC 509
            L  +DE  
Sbjct: 875 GLTTEDERA 883



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 159/343 (46%), Gaps = 41/343 (11%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ V  N L+  +C    +  A +   R++ +  +  V T   L+  L M G+ TEA  L
Sbjct: 584 PEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYEL 643

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             +         + P+V  Y  +I+G CK+G V K   +F +M  RG+      Y +LI 
Sbjct: 644 VEEMGG----KGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIY 699

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
                      KG      +L +E V           PD++ Y ++INS      +D+A 
Sbjct: 700 ALS-------KKGQVQETDKLFDEAVRRG------IRPDLVLYNALINSHSTSGNIDRAF 746

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           E+  +M+ + I PD V Y++L+ G CL+GR+D+ARKL   +   G  PD  +YNTLI+ Y
Sbjct: 747 EIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGY 806

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
           S    V++AL +  EM++ G  P                       L  +N L+ GLCK+
Sbjct: 807 SMKGDVKDALRIRNEMMNKGFNP----------------------TLLTYNALIQGLCKN 844

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
            +   A  + K++   G  P+  TY  +I GL  E   E+A D
Sbjct: 845 GQGDDAENMVKEMVENGITPDDSTYISLIEGLTTED--ERAID 885



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 157/332 (47%), Gaps = 22/332 (6%)

Query: 68  LNDALCFFNYMI---HMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           +++A+  F+ M+    ++P   M  +N+L+G    +      +   +R+   G+     +
Sbjct: 566 VDEAVKVFDEMLTKGEVKPEAVM--YNALIGGYCDQGKLDTALLYRDRMVERGVAMTVAT 623

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N+L++        ++A+  +  +  K  +PDV T   LI G C +G   +A  +F    
Sbjct: 624 YNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENM- 682

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
               R  V   V+ Y ++I  L K G V +   LF +   RGI PD  +YN+LI      
Sbjct: 683 ---SRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALI------ 733

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
            N     GN   A E+  E             PD ++Y +++  LC    VD+A++L  +
Sbjct: 734 -NSHSTSGNIDRAFEIMGEMEKKR------IAPDDVTYNTLMRGLCLLGRVDEARKLIDE 786

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M  RGI PD+V Y++LI GY + G + DA ++   + ++G  P   +YN LI    K  +
Sbjct: 787 MTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQ 846

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
            ++A ++  EM+  G+ PD+S  +   E   T
Sbjct: 847 GDDAENMVKEMVENGITPDDSTYISLIEGLTT 878



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 135/294 (45%), Gaps = 17/294 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L+ AL + + M+       + ++N L+ AL           L E +   GL PD  + N
Sbjct: 601 KLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYN 660

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           IL+N  CK   V  A      + R+     VVT   LI  L  +G+  E   LF + V  
Sbjct: 661 ILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAV-- 718

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             R  + P+++ Y ++I+     G +++   +  +M+ + I PD   YN+L+R  C    
Sbjct: 719 --RRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLL-- 774

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G    A +L +E      E G+   PD+++Y ++I+       V  A  +  +M 
Sbjct: 775 -----GRVDEARKLIDEMT----ERGI--QPDLVTYNTLISGYSMKGDVKDALRIRNEMM 823

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           ++G  P ++ Y++LI G C  G+ DDA  +   +   G  PD S+Y +LI   +
Sbjct: 824 NKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLT 877



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 96/233 (41%), Gaps = 17/233 (7%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N    E  +  AL  F  M        + ++ +L+ AL+ K        L +     G+ 
Sbjct: 664 NGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIR 723

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V  N L+N       +  AF  +G + +K  +PD VT   L+RGLC+ G+  EA  L
Sbjct: 724 PDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKL 783

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             +         + P+++ Y ++I G    G V     +  +M  +G  P    YN+LI+
Sbjct: 784 IDEMT----ERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQ 839

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
             C     +DA           E  V    E G+   PD  +Y S+I  L  +
Sbjct: 840 GLCKNGQGDDA-----------ENMVKEMVENGIT--PDDSTYISLIEGLTTE 879



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 15/128 (11%)

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE----------AAELFRTLHNTKF 402
           N L+ + + +     +L LY  M S+ + P ++  L           A  LF  +   + 
Sbjct: 421 NLLLTASAAVRPHATSLRLYSRMKSLSL-PISTASLHPLLSALPSAPAFALFADMFRLRL 479

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
            L  T FN ++  LC + +   A EL +++PR    PN VTY  +I G C  G ++ A D
Sbjct: 480 PLCTTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALD 535

Query: 463 LLPDMEEK 470
           ++ +M E+
Sbjct: 536 IMREMRER 543


>gi|32489931|emb|CAE05523.1| OSJNBa0038P21.16 [Oryza sativa Japonica Group]
 gi|38347491|emb|CAE05839.2| OSJNBa0091C07.1 [Oryza sativa Japonica Group]
          Length = 844

 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 126/487 (25%), Positives = 211/487 (43%), Gaps = 57/487 (11%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLN------TIGLLPDF 122
           N+A C F+ M+   P P + S++++L   A         CL++  N      T G+ P+ 
Sbjct: 367 NEAKCIFDSMVLKGPKPDIISYSTMLHGYA----TATDSCLADVHNIFNLMLTKGIAPNK 422

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
              NIL+N + +   +  A +    +  K   PD VT   +I  LC  G+  +A   F  
Sbjct: 423 HVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNH 482

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
            V       V P+   Y  +I G C  G + K + L  +M  + I P    Y S I    
Sbjct: 483 MVDI----GVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNL 538

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
           C       +G  +   ++ +  V   G+      P+V+++ S++   C    +++A  L 
Sbjct: 539 CK------EGRVAEGKDIMDMMVQ-TGQ-----RPNVVTFNSLMEGYCLVGNMEEAFALL 586

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
             M S GI P+  +Y +L+DGYC  GRIDDA  +F  +  +G  P +  Y+ +++   + 
Sbjct: 587 DAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQA 646

Query: 363 EKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVF 409
            +   A  ++ EMI  G                 N+C  EA  L   L     + D+  F
Sbjct: 647 RRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITF 706

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           N ++  + K  R + A ELF  +  YG  PN+ TY++MI  L  E   E+A +L   +E+
Sbjct: 707 NIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEK 766

Query: 470 K------------IR------ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHE 511
                        +R      E  KA   L  + +  +  +  T+S+L  L +++    E
Sbjct: 767 SGHASDSRLLNHIVRMLLNKAEVAKASNYLSIIGENNLTLEASTISLLASLFSREGKYRE 826

Query: 512 CMNLLPS 518
            + LLP+
Sbjct: 827 HIKLLPA 833



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/423 (25%), Positives = 189/423 (44%), Gaps = 31/423 (7%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K GEV+   A C F  M+     P +   NS++  L   K       + +++   G+ PD
Sbjct: 222 KDGEVD--KAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPD 279

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             + +++++  CK   +  A   L +++     P+ +T   LI G  + G + E+  +F 
Sbjct: 280 LFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFK 339

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           +  +  C   VIP V    S I  L K G  N+ + +F  M  +G  PD   Y++++  Y
Sbjct: 340 QMSS--C--GVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGY 395

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
             A +        S   ++H  F   N  L     P+   +  +IN+  +  ++DKA  +
Sbjct: 396 ATATD--------SCLADVHNIF---NLMLTKGIAPNKHVFNILINAYARCGMMDKAMLI 444

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F DM+++G+IPD V ++++I   C +GR+DDA   F  +   G  P  + Y  LI     
Sbjct: 445 FEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCN 504

Query: 362 IEKVEEALSLYGEMISMGVRP----------DNSC----ILEAAELFRTLHNTKFELDLT 407
             ++ +A  L  EM++  + P          +N C    + E  ++   +  T    ++ 
Sbjct: 505 HGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVV 564

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            FN L++G C    +  A+ L   +   G EPN   Y  ++ G C  G I+ A  +  DM
Sbjct: 565 TFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDM 624

Query: 468 EEK 470
             K
Sbjct: 625 LHK 627



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 186/394 (47%), Gaps = 43/394 (10%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           RL   GL PD  S +++   F K   V  A      ++ +   P ++    +I+ LC   
Sbjct: 201 RLLKNGLGPDDFSYSLIYG-FVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMK 259

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
           +  +A  +  K V       + P++  Y+ IIDGLCK   ++K   +   M   G  P++
Sbjct: 260 EMDKAESIVQKMV----DSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNS 315

Query: 232 FVYNSLIRVYCCAVNWEDA----KGNTSAALE---------LHEEFVNG-NGELGVIC-- 275
             YNSLI  Y  +  W ++    K  +S  +          +H  F +G   E   I   
Sbjct: 316 ITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDS 375

Query: 276 ------HPDVLSYCSIIN--SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
                  PD++SY ++++  +   D  +     +F  M ++GI P+  V++ LI+ Y   
Sbjct: 376 MVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARC 435

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS-- 385
           G +D A  +F  ++++G IPDT ++ T+I+S  +I ++++AL  +  M+ +GV P  +  
Sbjct: 436 GMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVY 495

Query: 386 -CILE----------AAELFRTLHNTKF-ELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
            C+++          A EL   + N       +  F+ +++ LCK  R+    ++   + 
Sbjct: 496 GCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMV 555

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           + G  PNVVT+  ++ G C+ G +E+A+ LL  M
Sbjct: 556 QTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAM 589



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 101/405 (24%), Positives = 171/405 (42%), Gaps = 86/405 (21%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P   + NIL++C+                 R+V  PD+        GL + G+  + +GL
Sbjct: 174 PTIHTYNILIDCY-----------------RRVHRPDL--------GLAIVGRLLK-NGL 207

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
                         P+   Y S+I G  KDG V+K   LFL+M  +G+ P   + NS+I+
Sbjct: 208 G-------------PDDFSY-SLIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIK 253

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C     + A           E  V    + G+   PD+ +Y  II+ LCK   +DKA+
Sbjct: 254 ELCKMKEMDKA-----------ESIVQKMVDSGIA--PDLFTYSLIIDGLCKSKAMDKAE 300

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            +   M   G  P+ + Y+SLI GY + G  +++ ++F  + S G IP   + N+ I++ 
Sbjct: 301 RVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHAL 360

Query: 360 SKIEKVEEALSLYGEMISMGVRPD---------------NSCILEAAELFRTLHNTKFEL 404
            K  +  EA  ++  M+  G +PD               +SC+ +   +F  +       
Sbjct: 361 FKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAP 420

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           +  VFN L++   +   +  A  +F+ +   G  P+ VT+  +I  LC  G ++ A    
Sbjct: 421 NKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKF 480

Query: 465 PDM-------EEKIRECL-----------KAIELLHKMAKRYVKP 491
             M        E +  CL           KA EL+ +M  + + P
Sbjct: 481 NHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPP 525


>gi|224109914|ref|XP_002333182.1| predicted protein [Populus trichocarpa]
 gi|222835036|gb|EEE73485.1| predicted protein [Populus trichocarpa]
          Length = 319

 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 100/313 (31%), Positives = 158/313 (50%), Gaps = 49/313 (15%)

Query: 227 IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII 286
           I PDA  +N L+   C        KG  S A  + +  +    E GV   P+ ++Y S++
Sbjct: 6   IMPDAVTFNILVDTLC-------KKGKISEAQGIVKTMI----EKGV--EPNTVTYSSLM 52

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           N       V +A+++F  M +RG IPDV+ Y+ LI+G C   RID+A+++F  +   G I
Sbjct: 53  NGYLLQNRVFEARKVFNAMITRGCIPDVLSYNILINGCCKAQRIDEAKQIFDEMSFRGLI 112

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAEL 393
           P+T++YNTL+  + K     + + L+ +M + G  PD                + +A EL
Sbjct: 113 PNTATYNTLLGGFWK-----QKIQLFKDMHAQGCSPDLVTYSIFLHGLSKQGYLDQALEL 167

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
           FR + N     DL ++N L+D +CKS +L  A ELF KL   G  P+V ++T +I GLC 
Sbjct: 168 FREMQNNYLNPDLVIYNILIDAMCKSGKLEDARELFLKLHVKGLLPDVRSWTSIISGLCR 227

Query: 454 EGGIEKAYDLLPDMEEK------------IRECL------KAIELLHKMAKRYVKPDEIT 495
           EG +++AY     ME              +R  L      +A +L  +M  R    D +T
Sbjct: 228 EGLLDEAYKAFRQMERDGCPPDCCSYNVIVRGFLQNNGASRAEQLFQEMFDRGFSADALT 287

Query: 496 VSILEELLNKDEN 508
            ++  +LL+KD+N
Sbjct: 288 RTLAADLLSKDDN 300



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 146/300 (48%), Gaps = 33/300 (11%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           ++PD V+ NIL++  CK   +S+A   +  ++ K   P+ VT   L+ G  +Q +  EA 
Sbjct: 6   IMPDAVTFNILVDTLCKKGKISEAQGIVKTMIEKGVEPNTVTYSSLMNGYLLQNRVFEAR 65

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            +F   +   C    IP+V+ Y  +I+G CK   +++ + +F +M  RG+ P+   YN+L
Sbjct: 66  KVFNAMITRGC----IPDVLSYNILINGCCKAQRIDEAKQIFDEMSFRGLIPNTATYNTL 121

Query: 238 IR-----------------------VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
           +                         Y   ++    +G    ALEL  E  N        
Sbjct: 122 LGGFWKQKIQLFKDMHAQGCSPDLVTYSIFLHGLSKQGYLDQALELFREMQNN------Y 175

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
            +PD++ Y  +I+++CK   ++ A+ELFL +  +G++PDV  ++S+I G C  G +D+A 
Sbjct: 176 LNPDLVIYNILIDAMCKSGKLEDARELFLKLHVKGLLPDVRSWTSIISGLCREGLLDEAY 235

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
           K F  +E +GC PD  SYN ++  + +      A  L+ EM   G   D      AA+L 
Sbjct: 236 KAFRQMERDGCPPDCCSYNVIVRGFLQNNGASRAEQLFQEMFDRGFSADALTRTLAADLL 295



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 138/297 (46%), Gaps = 34/297 (11%)

Query: 152 VFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF 211
           +  PD VT   L+  LC +GK +EA G+    +       V PN + Y+S+++G      
Sbjct: 5   IIMPDAVTFNILVDTLCKKGKISEAQGIVKTMI----EKGVEPNTVTYSSLMNGYLLQNR 60

Query: 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG------------NTSAALE 259
           V + R +F  M  RG  PD   YN LI   C A   ++AK             NT+    
Sbjct: 61  VFEARKVFNAMITRGCIPDVLSYNILINGCCKAQRIDEAKQIFDEMSFRGLIPNTATYNT 120

Query: 260 LHEEFVNGNGEL-----GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
           L   F     +L        C PD+++Y   ++ L K   +D+A ELF +M++  + PD+
Sbjct: 121 LLGGFWKQKIQLFKDMHAQGCSPDLVTYSIFLHGLSKQGYLDQALELFREMQNNYLNPDL 180

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           V+Y+ LID  C  G+++DAR+LF+ +  +G +PD  S+ ++I+   +   ++EA   + +
Sbjct: 181 VIYNILIDAMCKSGKLEDARELFLKLHVKGLLPDVRSWTSIISGLCREGLLDEAYKAFRQ 240

Query: 375 MISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
           M   G  PD             N+    A +LF+ + +  F  D        D L K
Sbjct: 241 MERDGCPPDCCSYNVIVRGFLQNNGASRAEQLFQEMFDRGFSADALTRTLAADLLSK 297



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 9/175 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            +++A   F+ M      P   ++N+LLG    +K     I L + ++  G  PD V+ +
Sbjct: 95  RIDEAKQIFDEMSFRGLIPNTATYNTLLGGFWKQK-----IQLFKDMHAQGCSPDLVTYS 149

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           I ++   K   +  A      +     +PD+V    LI  +C  GK  +A  LF K    
Sbjct: 150 IFLHGLSKQGYLDQALELFREMQNNYLNPDLVIYNILIDAMCKSGKLEDARELFLKLHV- 208

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
                ++P+V  + SII GLC++G +++    F  M+  G  PD   YN ++R +
Sbjct: 209 ---KGLLPDVRSWTSIISGLCREGLLDEAYKAFRQMERDGCPPDCCSYNVIVRGF 260



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 5/156 (3%)

Query: 79  IHMQP-TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           +H Q  +P + +++  L  L+ + Y    + L   +    L PD V  NIL++  CK   
Sbjct: 136 MHAQGCSPDLVTYSIFLHGLSKQGYLDQALELFREMQNNYLNPDLVIYNILIDAMCKSGK 195

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           + DA     ++  K   PDV +   +I GLC +G   EA   F +      R    P+  
Sbjct: 196 LEDARELFLKLHVKGLLPDVRSWTSIISGLCREGLLDEAYKAFRQME----RDGCPPDCC 251

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233
            Y  I+ G  ++   ++   LF +M  RG   DA  
Sbjct: 252 SYNVIVRGFLQNNGASRAEQLFQEMFDRGFSADALT 287


>gi|302766715|ref|XP_002966778.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
 gi|300166198|gb|EFJ32805.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
          Length = 480

 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 169/375 (45%), Gaps = 33/375 (8%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           E +   G  PD  S  +L+  F K          L R+L     P+ +    LI  LC  
Sbjct: 18  EEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNNLISCLCKA 77

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G   EA     +        +  PNV+ Y  IIDG CK   + K      +M+  G  P 
Sbjct: 78  GMLAEAESYLKRMPQ-----HCAPNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPPT 132

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
              Y+S+++ +C         GN S A+++  E           C PD++++  +++ L 
Sbjct: 133 PHAYSSIVQSFC-------KTGNVSKAMDVFAEMPAKG------CEPDIVNFNVLLSGLW 179

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           +   + +A+ELF  M SRG  PDVV Y+++I G C   ++D+A  L   ++ E   P   
Sbjct: 180 RARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFV 239

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMG---VRPDNSCIL------------EAAELFR 395
           +Y TLI+   K  ++++A  ++ +M         P  S ++            EA E+F+
Sbjct: 240 TYTTLIDHLCKFARLQQAYEVFEKMAEGPCPCTEPAYSVLILINGLCKARRPGEAKEMFQ 299

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            +        +  +N L++GL  + +L+ A EL   +    P PN+ TY ++I  LC   
Sbjct: 300 EMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPAPNMFTYEILISSLCKTD 359

Query: 456 GIEKAYDLLPDMEEK 470
            +E+A+ LL  M +K
Sbjct: 360 QVEEAFKLLSAMRDK 374



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 171/387 (44%), Gaps = 52/387 (13%)

Query: 153 FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFV 212
           FSPDV +   LIRG    G F        + +       + PN I Y ++I  LCK G +
Sbjct: 25  FSPDVQSHCLLIRGFFKSGSFQRGCSQLDRML----EAGLFPNAILYNNLISCLCKAGML 80

Query: 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
            +    +L    +   P+   YN +I  YC A N E A             F+    ELG
Sbjct: 81  AEAES-YLKRMPQHCAPNVVSYNIIIDGYCKARNIEKALA-----------FLREMEELG 128

Query: 273 VICHPDV-LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
              HP    +Y SI+ S CK   V KA ++F +M ++G  PD+V ++ L+ G     +I 
Sbjct: 129 ---HPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIH 185

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP--------- 382
           +AR+LF S+ S GC PD  +YNT+I    K +K++EA+ L   M    V P         
Sbjct: 186 EARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLI 245

Query: 383 DNSC----ILEAAELFRTLHNTKFELDLTVFNC--LVDGLCKSWRLRSAWELFKKLPRYG 436
           D+ C    + +A E+F  +           ++   L++GLCK+ R   A E+F+++   G
Sbjct: 246 DHLCKFARLQQAYEVFEKMAEGPCPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGRG 305

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITV 496
             P VVTY  ++ GL     ++                  A+EL + M  +   P+  T 
Sbjct: 306 ISPTVVTYNTLLEGLLSTAKLQ-----------------DAMELTYFMLDQVPAPNMFTY 348

Query: 497 SILEELLNKDENCHECMNLLPSFLSRN 523
            IL   L K +   E   LL +   + 
Sbjct: 349 EILISSLCKTDQVEEAFKLLSAMRDKG 375



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 175/403 (43%), Gaps = 31/403 (7%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
            P + S+N ++      +     +     +  +G  P   + + ++  FCK   VS A  
Sbjct: 95  APNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMD 154

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
               +  K   PD+V    L+ GL    K  EA  LF    +  C+P+V+     Y ++I
Sbjct: 155 VFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVV----TYNTMI 210

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
            GLCK   +++   L   MK   + P    Y +LI   C     + A        E+ E+
Sbjct: 211 AGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQA-------YEVFEK 263

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
              G       C     S   +IN LCK     +AKE+F +M+ RGI P VV Y++L++G
Sbjct: 264 MAEGP----CPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEG 319

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
                ++ DA +L   +  +   P+  +Y  LI+S  K ++VEEA  L   M   G  P 
Sbjct: 320 LLSTAKLQDAMELTYFMLDQVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPS 379

Query: 384 -------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
                           + +A EL++ +     +  +   N L+DG+ +   +  A +  K
Sbjct: 380 LKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLK 439

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
           ++   G  P+  TY  ++ GLC +G  ++A  L+   EE +R+
Sbjct: 440 QMTDTGIVPDKFTYDKLVVGLCWQGKADQARKLV---EELVRD 479



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 145/353 (41%), Gaps = 52/353 (14%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G V  + A+  F  M      P + +FN LL  L   +       L   +N+ G  PD
Sbjct: 145 KTGNV--SKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPD 202

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+ N ++   CK   + +A   L R+ ++  SP  VT   LI  LC   +  +A  +F 
Sbjct: 203 VVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFE 262

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           K     C P   P       +I+GLCK     + + +F +M+GRGI P    YN+L+   
Sbjct: 263 KMAEGPC-PCTEP-AYSVLILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGL 320

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
                 +DA   T   L+              +  P++ +Y  +I+SLCK   V++A +L
Sbjct: 321 LSTAKLQDAMELTYFMLD-------------QVPAPNMFTYEILISSLCKTDQVEEAFKL 367

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV----------------------- 338
              M+ +G +P + ++  L+      GR+DDA +L+                        
Sbjct: 368 LSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLDGILR 427

Query: 339 ------------SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
                        +   G +PD  +Y+ L+       K ++A  L  E++  G
Sbjct: 428 RGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQGKADQARKLVEELVRDG 480



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 102/233 (43%), Gaps = 49/233 (21%)

Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIPDV------------------------------- 314
           I  L +  LV +A+ +  +MK  G  PDV                               
Sbjct: 1   IRKLVEADLVAQAEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGL 60

Query: 315 ----VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
               ++Y++LI   C  G + +A   ++    + C P+  SYN +I+ Y K   +E+AL+
Sbjct: 61  FPNAILYNNLISCLCKAGMLAEAES-YLKRMPQHCAPNVVSYNIIIDGYCKARNIEKALA 119

Query: 371 LYGEMISMGVRP-------------DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
              EM  +G  P                 + +A ++F  +     E D+  FN L+ GL 
Sbjct: 120 FLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLW 179

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           ++ ++  A ELF+ +   G +P+VVTY  MI GLC    +++A  LL  M+++
Sbjct: 180 RARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQE 232



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 83/212 (39%), Gaps = 41/212 (19%)

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE 389
           +  A  +   ++  G  PD  S+  LI  + K    +   S    M+  G+ P+      
Sbjct: 10  VAQAEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNA----- 64

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
                             ++N L+  LCK+  L  A    K++P++   PNVV+Y ++I 
Sbjct: 65  -----------------ILYNNLISCLCKAGMLAEAESYLKRMPQHCA-PNVVSYNIIID 106

Query: 450 GLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKP 491
           G C    IEKA   L +MEE                  K     KA+++  +M  +  +P
Sbjct: 107 GYCKARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEP 166

Query: 492 DEITVSILEELLNKDENCHECMNLLPSFLSRN 523
           D +  ++L   L +    HE   L  S  SR 
Sbjct: 167 DIVNFNVLLSGLWRARKIHEARELFRSMNSRG 198


>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
          Length = 799

 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 165/351 (47%), Gaps = 32/351 (9%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           + +   GL  D V+   L+N  C+   + +A   L  +  K    D VT   LI G C  
Sbjct: 379 DEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKV 438

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           GK TEA  +  K V    +  V PNV+ Y ++ DGLCK G V     L  +M  +G+  +
Sbjct: 439 GKMTEAFLVHNKMV----QKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELN 494

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
            F YNSLI   C A N E A       +++ E  +           PDV +Y +II +LC
Sbjct: 495 IFTYNSLINGLCKAGNLEQA---MRTMIDMDEAGLK----------PDVYTYTTIIGALC 541

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           +   +D+A  L  +M  +GI P +V Y+ L++G+C+ GR++  ++L   +  +   P+T+
Sbjct: 542 QSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTT 601

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTL 397
           +YN+L+  Y   + ++    +Y  M+S  V P+ +              + EA      +
Sbjct: 602 TYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEM 661

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL--PRYGPEPNVVTYTV 446
               F L  + +N L+  L K  +   A  LF+K+   R   EP+V  + +
Sbjct: 662 IEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYI 712



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 154/321 (47%), Gaps = 33/321 (10%)

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           L++ LC  G+  +A  LF +  +        P+V+ Y  ++ G C    +     L  +M
Sbjct: 259 LLKALCTAGRIKDAHQLFDEMAS-------PPDVVTYGIMVHGYCTLSELETAIKLLSEM 311

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
             RG+  +   Y S+I + C        +G  S A+ + E+ V      GV+   D   +
Sbjct: 312 AARGLELNPVAYTSVIALLC-------DEGQVSDAVRVVEDMVMH----GVVL--DAAVF 358

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
            ++++  C+   +  A+  F +M+ RG+  D V Y++LI+G C  G + +A ++   +E 
Sbjct: 359 TTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMED 418

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC----ILE 389
           +G   D  +Y  LI+ Y K+ K+ EA  ++ +M+   V P         D  C    +  
Sbjct: 419 KGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCA 478

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
           A EL   + +   EL++  +N L++GLCK+  L  A      +   G +P+V TYT +I 
Sbjct: 479 ANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIG 538

Query: 450 GLCIEGGIEKAYDLLPDMEEK 470
            LC    +++A+ LL +M +K
Sbjct: 539 ALCQSKELDRAHSLLQEMLDK 559



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 167/362 (46%), Gaps = 37/362 (10%)

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           S NIL+   C    + DA      +      PDVVT G ++ G C   +   A  L ++ 
Sbjct: 255 SYNILLKALCTAGRIKDAHQLFDEM---ASPPDVVTYGIMVHGYCTLSELETAIKLLSEM 311

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
            A      +  N + Y S+I  LC +G V+    +  DM   G+  DA V+ +++  +C 
Sbjct: 312 AA----RGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFC- 366

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                  KG+ +AA    +E      + G+    D ++Y ++IN LC+   + +A+ +  
Sbjct: 367 ------RKGDLAAARNWFDEM----QKRGLAA--DGVTYTALINGLCRAGELKEAERVLQ 414

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
           +M+ +G+  D V Y+ LIDGYC +G++ +A  +   +  +   P+  +Y  L +   K  
Sbjct: 415 EMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQG 474

Query: 364 KVEEALSLYGEMISMGVRPD----NSCI--------LEAAELFRTL---HNTKFELDLTV 408
            V  A  L  EM S G+  +    NS I        LE A   RT+        + D+  
Sbjct: 475 DVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQA--MRTMIDMDEAGLKPDVYT 532

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +  ++  LC+S  L  A  L +++   G +P +VTY V++ G C+ G +E    LL  M 
Sbjct: 533 YTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWML 592

Query: 469 EK 470
           EK
Sbjct: 593 EK 594



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 175/386 (45%), Gaps = 39/386 (10%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V+  I+++ +C +  +  A   L  +  +    + V    +I  LC +G+ ++A  +
Sbjct: 283 PDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRV 342

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
               V       V+ +   + +++ G C+ G +   R  F +M+ RG+  D   Y +LI 
Sbjct: 343 VEDMVMH----GVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALIN 398

Query: 240 VYCCAVNWEDA---------KGNTSAAL-------------ELHEEFVNGNGELGVICHP 277
             C A   ++A         KG    A+             ++ E F+  N  +     P
Sbjct: 399 GLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTP 458

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           +V++Y ++ + LCK   V  A EL  +M S+G+  ++  Y+SLI+G C  G ++ A +  
Sbjct: 459 NVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTM 518

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSCIL 388
           + ++  G  PD  +Y T+I +  + ++++ A SL  EM+  G++P         +  C+ 
Sbjct: 519 IDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMS 578

Query: 389 EAAELFRTLHNTKFELDL----TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
              E  + L     E ++    T +N L+   C    ++S  E++K +      PN  TY
Sbjct: 579 GRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTY 638

Query: 445 TVMICGLCIEGGIEKAYDLLPDMEEK 470
            ++I G C    +++A     +M EK
Sbjct: 639 NILIKGHCKARNMKEALYFHSEMIEK 664



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 131/322 (40%), Gaps = 55/322 (17%)

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           N   Y  ++  LC  G +     LF +M      PD   Y  ++  YC     E      
Sbjct: 252 NTCSYNILLKALCTAGRIKDAHQLFDEMASP---PDVVTYGIMVHGYCTLSELE------ 302

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
             A++L  E      EL  +      +Y S+I  LC +  V  A  +  DM   G++ D 
Sbjct: 303 -TAIKLLSEMAARGLELNPV------AYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDA 355

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
            V+++++ G+C  G +  AR  F  ++  G   D  +Y  LIN   +  +++EA  +  E
Sbjct: 356 AVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQE 415

Query: 375 MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
           M   G+                      ++D   +  L+DG CK  ++  A+ +  K+ +
Sbjct: 416 MEDKGL----------------------DVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQ 453

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEI 494
               PNVVTYT +  GLC +G +                   A ELLH+M  + ++ +  
Sbjct: 454 KRVTPNVVTYTALSDGLCKQGDV-----------------CAANELLHEMCSKGLELNIF 496

Query: 495 TVSILEELLNKDENCHECMNLL 516
           T + L   L K  N  + M  +
Sbjct: 497 TYNSLINGLCKAGNLEQAMRTM 518



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 131/319 (41%), Gaps = 61/319 (19%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL  D V+  +L++ +CK+  +++AF+   ++++K  +P+VVT   L  GLC QG    A
Sbjct: 420 GLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAA 479

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
           + L  +     C   +  N+  Y S+I+GLCK G + +     +DM   G+ PD + Y +
Sbjct: 480 NELLHEM----CSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTT 535

Query: 237 LIRVYCCAVNWEDAKGNTSAALE--LHEEFVNGNGELGVIC------------------- 275
           +I   C +   + A       L+  +    V  N  +   C                   
Sbjct: 536 IIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKN 595

Query: 276 -HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM------- 327
            HP+  +Y S++   C +  +    E++  M S+ ++P+   Y+ LI G+C         
Sbjct: 596 IHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEAL 655

Query: 328 ----------------------------GRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
                                        +  +AR+LF  +  E    +   YN  I+  
Sbjct: 656 YFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYIDLS 715

Query: 360 SKIEKVEEALSLYGEMISM 378
              + +E  L+L  E++ +
Sbjct: 716 FNEDNLESTLALCDELVEV 734



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 95/234 (40%), Gaps = 17/234 (7%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++NSL+  L         +     ++  GL PD  +   ++   C+   +  A   L  +
Sbjct: 497 TYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEM 556

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
           L K   P +VT   L+ G CM G+         + + +    N+ PN   Y S++   C 
Sbjct: 557 LDKGIKPTIVTYNVLMNGFCMSGRVEGGK----RLLEWMLEKNIHPNTTTYNSLMKQYCI 612

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           +  +     ++  M  + + P+   YN LI+ +C A N ++       AL  H E +   
Sbjct: 613 EKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKE-------ALYFHSEMIEKG 665

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
             L         SY ++I  L K     +A+ LF  M+   +  +  VY+  ID
Sbjct: 666 FRLTAS------SYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYID 713



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 7/166 (4%)

Query: 78  MIHMQPTPFMP---SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           MI M      P   ++ +++GAL   K       L + +   G+ P  V+ N+LMN FC 
Sbjct: 518 MIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCM 577

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
              V      L  +L K   P+  T   L++  C++      + ++   ++ +    V+P
Sbjct: 578 SGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQE----VVP 633

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
           N   Y  +I G CK   + +      +M  +G    A  YN+LIR+
Sbjct: 634 NENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRL 679


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 109/424 (25%), Positives = 181/424 (42%), Gaps = 93/424 (21%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD  + N +++ FCK   +  A   L R+ RK FSPDVVT   +I   C +GK   A  +
Sbjct: 42  PDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKV 101

Query: 180 FTKFVA-FDCRPNVI-------------------------------PNVICYASIIDGLC 207
           F + +   +C+P +I                               P+   Y  I  GLC
Sbjct: 102 FEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLC 161

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
           K+G V++       +  RG  PD   YN L+R       W++ +   S      E F  G
Sbjct: 162 KEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMS------EIFSRG 215

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
                  C P+V++Y  +I+SLC+D  ++++  L   MK +G+ PD   Y  LI  +C  
Sbjct: 216 -------CEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCRE 268

Query: 328 GRID-----------------------------------DARKLFVSIESEGCIPDTSSY 352
           G++D                                    A ++F  ++  GC P+ SSY
Sbjct: 269 GKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSY 328

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHN 399
           NT++++         AL +  +M+S G+ PD             +  + EA  L   + +
Sbjct: 329 NTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLS 388

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
            +F+ ++  +  ++ GLCK+ R+  A E+   +   G +PN  TYT++I G+   G   +
Sbjct: 389 GRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIEGIGFSGSRTQ 448

Query: 460 AYDL 463
           A +L
Sbjct: 449 AMEL 452



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 110/420 (26%), Positives = 170/420 (40%), Gaps = 78/420 (18%)

Query: 148 ILRKVFSPDVVTLGCLIRGLCMQ---GKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           ++ K + PDV+    LI+G        K T   G+  K           P+V  Y ++I 
Sbjct: 1   MVAKDYQPDVILCTKLIKGFFNSRNIDKATRVMGILEKHGK--------PDVFAYNAVIS 52

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           G CK   +   + +   MK +G  PD   +N +I  +C        KG    AL++ EE 
Sbjct: 53  GFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFC-------GKGKIDLALKVFEEL 105

Query: 265 VNGNG-----------------ELGVI-------------CHPDVLSYCSIINSLCKDVL 294
           +  N                  E G+                PD  +Y  I   LCK+  
Sbjct: 106 LKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGK 165

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           VD+A E    + SRG  PDV+ Y+ L+      G+ D+  K    I S GC P+  +Y+ 
Sbjct: 166 VDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSI 225

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTK 401
           LI+S  +  K+EE+++L   M   G+ PD  C             +  A E    +    
Sbjct: 226 LISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDG 285

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
           F  D+  +N ++  LCK+     A E+F KL   G  PNV +Y  M+  L   G      
Sbjct: 286 FLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSG------ 339

Query: 462 DLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
                      +  +A+ ++ +M  + + PD IT + L   L +D    E + LL   LS
Sbjct: 340 -----------DRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLS 388



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 138/298 (46%), Gaps = 40/298 (13%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL PD  + N++    CK   V  AF  +  +  +   PDV+T   L+R L  QGK+ E 
Sbjct: 145 GLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEG 204

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
               ++  +  C PNV+     Y+ +I  LC+DG + +   L   MK +G+ PDA+ Y+ 
Sbjct: 205 EKWMSEIFSRGCEPNVVT----YSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDP 260

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFV--------------------NGNGELGV--- 273
           LI  +C        +G    A+E  +  +                    NGNG+  V   
Sbjct: 261 LIAAFC-------REGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIF 313

Query: 274 ------ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
                  C P+V SY +++++L       +A  +   M S+GI PDV+ Y+SLI   C  
Sbjct: 314 GKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRD 373

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
           G +D+A  L   + S    P+  SY T++    K  ++++A+ +   MI  G +P+ +
Sbjct: 374 GMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNET 431



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 106/260 (40%), Gaps = 25/260 (9%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL PD    + L+  FC+   +  A   L  ++   F PD+V    ++  LC  G    A
Sbjct: 250 GLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHA 309

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             +F K     C PNV      Y +++  L   G   +   +   M  +GI PD   YNS
Sbjct: 310 VEIFGKLDEVGCPPNVSS----YNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNS 365

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI   C         G    A+ L  + ++G         P+++SY +++  LCK   +D
Sbjct: 366 LISCLC-------RDGMVDEAIGLLADMLSGR------FQPNIVSYKTVLLGLCKAHRID 412

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A E+   M   G  P+   Y+ LI+G    G    A +L  S+     I +        
Sbjct: 413 DAIEVLAAMIENGCQPNETTYTLLIEGIGFSGSRTQAMELANSLYIMNAISE-------- 464

Query: 357 NSYSKIEKVEEALSLYGEMI 376
           +S+ ++ K    L +Y   I
Sbjct: 465 DSFKRLNKTFPLLDVYKGFI 484



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 16/126 (12%)

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           D+  +N ++ G CK+ R+ SA  +  ++ R G  P+VVT+ +MI   C +G I+ A    
Sbjct: 43  DVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLA---- 98

Query: 465 PDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQ 524
                     LK  E L K      KP  IT +IL E    +    E + LL   LSR  
Sbjct: 99  ----------LKVFEELLK--DNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGL 146

Query: 525 EESKLT 530
           E    T
Sbjct: 147 EPDTFT 152


>gi|302757477|ref|XP_002962162.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
 gi|300170821|gb|EFJ37422.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
          Length = 484

 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 171/364 (46%), Gaps = 34/364 (9%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P   S  I++ CFC +     A+  LG +      PDV     +++G C  G+   A   
Sbjct: 77  PSLYSFTIIIQCFCNVRNPGRAWRYLGYMRSLGIPPDVTAYNVVLKGYCDLGRVGRALIK 136

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F K +   C+PNV      Y ++I+GLCK G ++    LF  +    + PD F Y++L+ 
Sbjct: 137 FGK-MGKTCKPNVAT----YNTVINGLCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVH 191

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C A   E       AA+++++  +  N +       D  +Y ++ +  CK+  VD+A 
Sbjct: 192 GLCQAERLE-------AAIKVYDMMLEANYD------GDAGAYNAMADGFCKERRVDEAL 238

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYC-LMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
           E+   M  RG  P VV Y+ +I+G C    RI++A +LF  +    C P+  +Y T+I  
Sbjct: 239 EVLKTMIQRGCKPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILG 298

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELD 405
            SKI +V+  L L+  M   G+ PD                + EA  + +         D
Sbjct: 299 LSKIYEVQRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPD 358

Query: 406 LTVFNCLVDGLCKSW--RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
           + ++  L+ G C++   R+  A  LF+ +      PNV+TY +++ GLC  G  ++AY +
Sbjct: 359 VYMYTTLISGYCRARKPRVDEALLLFQNMKDRRVWPNVITYNIVLRGLCKTGRFDEAYQI 418

Query: 464 LPDM 467
             +M
Sbjct: 419 FQEM 422



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 112/449 (24%), Positives = 205/449 (45%), Gaps = 61/449 (13%)

Query: 51  TKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGAL-----AGKKY-YV 104
           T+LL +L    ++ E     A+ FF   +     P + SF  ++         G+ + Y+
Sbjct: 48  TRLLHHLVRARRTRE-----AVRFFKRELCAHCRPSLYSFTIIIQCFCNVRNPGRAWRYL 102

Query: 105 NFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLI 164
            +      + ++G+ PD  + N+++  +C +  V  A +  G+ + K   P+V T   +I
Sbjct: 103 GY------MRSLGIPPDVTAYNVVLKGYCDLGRVGRALIKFGK-MGKTCKPNVATYNTVI 155

Query: 165 RGLCMQGKFTEASGLFTKFVAFDCRPN--VIPNVICYASIIDGLCKDGFVN---KVRVLF 219
            GLC  GK   A  LFT+       P+  V P+   Y++++ GLC+   +    KV  + 
Sbjct: 156 NGLCKFGKIDWAVHLFTRL------PHDLVDPDGFTYSTLVHGLCQAERLEAAIKVYDMM 209

Query: 220 LDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDV 279
           L+    G   DA  YN++   +C        +     ALE+ +  +         C P V
Sbjct: 210 LEANYDG---DAGAYNAMADGFC-------KERRVDEALEVLKTMIQRG------CKPSV 253

Query: 280 LSYCSIINSLCK-DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
           ++Y  IIN +C+    +++A  LF  M      P+ V Y ++I G   +  +    +LF 
Sbjct: 254 VTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGLSKIYEVQRCLELFK 313

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALS---------------LYGEMISMGVRPD 383
            +   G  PD  +Y++LI ++ K+ K++EA S               +Y  +IS   R  
Sbjct: 314 GMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPDVYMYTTLISGYCRAR 373

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
              + EA  LF+ + + +   ++  +N ++ GLCK+ R   A+++F+++ +    PN +T
Sbjct: 374 KPRVDEALLLFQNMKDRRVWPNVITYNIVLRGLCKTGRFDEAYQIFQEMFKVKCSPNRMT 433

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEKIR 472
           + VM  G+   G  +K   +  DM  K R
Sbjct: 434 FKVMTMGMIHCGKTDKFERIFMDMVYKGR 462



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 137/303 (45%), Gaps = 30/303 (9%)

Query: 104 VNFICLSERLNTIGLLPDFV----------SLNILMNCFCKMIGVSDAFVALGRILRKVF 153
           V+ +C +ERL     + D +          + N + + FCK   V +A   L  ++++  
Sbjct: 190 VHGLCQAERLEAAIKVYDMMLEANYDGDAGAYNAMADGFCKERRVDEALEVLKTMIQRGC 249

Query: 154 SPDVVTLGCLIRGLCM-QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFV 212
            P VVT  C+I G+C  + +  EA  LF + V  DC PN +     Y ++I GL K   V
Sbjct: 250 KPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVT----YGTMILGLSKIYEV 305

Query: 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
            +   LF  M   G+ PD + Y+SLI  +      ++AK     A   H           
Sbjct: 306 QRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNH----------- 354

Query: 273 VICHPDVLSYCSIINSLCK--DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
               PDV  Y ++I+  C+     VD+A  LF +MK R + P+V+ Y+ ++ G C  GR 
Sbjct: 355 --VGPDVYMYTTLISGYCRARKPRVDEALLLFQNMKDRRVWPNVITYNIVLRGLCKTGRF 412

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEA 390
           D+A ++F  +    C P+  ++  +        K ++   ++ +M+  G       ILE 
Sbjct: 413 DEAYQIFQEMFKVKCSPNRMTFKVMTMGMIHCGKTDKFERIFMDMVYKGRWQGEGPILEQ 472

Query: 391 AEL 393
             L
Sbjct: 473 HGL 475



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 155/367 (42%), Gaps = 61/367 (16%)

Query: 153 FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFV 212
           +  DV     L+  L    +  EA   F + +   CRP++    I    II   C     
Sbjct: 40  YRHDVYCYTRLLHHLVRARRTREAVRFFKRELCAHCRPSLYSFTI----IIQCFCNVRNP 95

Query: 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
            +       M+  GI PD   YN +++ YC      D      A ++         G++G
Sbjct: 96  GRAWRYLGYMRSLGIPPDVTAYNVVLKGYC------DLGRVGRALIKF--------GKMG 141

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
             C P+V +Y ++IN LCK   +D A  LF  +    + PD   YS+L+ G C   R++ 
Sbjct: 142 KTCKPNVATYNTVINGLCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAERLEA 201

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392
           A K++  +       D  +YN + + + K  +V+EAL +   MI  G +P          
Sbjct: 202 AIKVYDMMLEANYDGDAGAYNAMADGFCKERRVDEALEVLKTMIQRGCKP---------- 251

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCK-SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
                        +  +NC+++G+C+   R+  A+ LF+++      PN VTY  MI GL
Sbjct: 252 ------------SVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGL 299

Query: 452 --------CIE--GGIEKAYDLLPDMEE---------KIRECLKAIELLHKMAKRYVKPD 492
                   C+E   G+ KA  L PD            K+R+  +A  +L   A+ +V PD
Sbjct: 300 SKIYEVQRCLELFKGMSKA-GLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPD 358

Query: 493 EITVSIL 499
               + L
Sbjct: 359 VYMYTTL 365



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 95/226 (42%), Gaps = 32/226 (14%)

Query: 302 FLDMKSR--GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           F D  S+  G   DV  Y+ L+       R  +A + F       C P   S+  +I  +
Sbjct: 30  FFDWSSKQEGYRHDVYCYTRLLHHLVRARRTREAVRFFKRELCAHCRPSLYSFTIIIQCF 89

Query: 360 SKIEKVEEALSLYGEMISMGVRPD----NSCILEAAELFRTLHN-TKF-------ELDLT 407
             +     A    G M S+G+ PD    N  +    +L R      KF       + ++ 
Sbjct: 90  CNVRNPGRAWRYLGYMRSLGIPPDVTAYNVVLKGYCDLGRVGRALIKFGKMGKTCKPNVA 149

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC----IEGGIE----- 458
            +N +++GLCK  ++  A  LF +LP    +P+  TY+ ++ GLC    +E  I+     
Sbjct: 150 TYNTVINGLCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAERLEAAIKVYDMM 209

Query: 459 ---------KAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEIT 495
                     AY+ + D   K R   +A+E+L  M +R  KP  +T
Sbjct: 210 LEANYDGDAGAYNAMADGFCKERRVDEALEVLKTMIQRGCKPSVVT 255


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 117/429 (27%), Positives = 192/429 (44%), Gaps = 71/429 (16%)

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
            + NI++   C     + A      +LR++  P+ VT   +I G C +G+   A  +  +
Sbjct: 489 TTFNIMLRHLCSAGKPARAL----ELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMRE 544

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG-IYPDAFVYNSLIRVY 241
                 R  + PN   Y ++I G CK G V++   +F +M  +G + P+A +YN+LI  Y
Sbjct: 545 MRE---RGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGY 601

Query: 242 C------CAVNWEDAKGNTSAALEL-------HEEFVNGNG----EL-----GVICHPDV 279
           C       A+ + D       A+ +       H  F++G G    EL     G    PDV
Sbjct: 602 CDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDV 661

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
            +Y  +IN  CK+  V KA E+F +M  RG+   VV Y++LI      G++ +  KLF  
Sbjct: 662 FTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDE 721

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN 399
               G  PD   YN LINS+S    ++ A  + GEM    + PD+               
Sbjct: 722 AVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDD--------------- 766

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
                    +N L+ GLC   R+  A +L  ++   G +P++VTY  +I G  ++G ++ 
Sbjct: 767 -------VTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKD 819

Query: 460 AYDLLPDMEEK------------IRECLK------AIELLHKMAKRYVKPDEIT-VSILE 500
           A  +  +M  K            I+   K      A  ++ +M +  + PD+ T +S++E
Sbjct: 820 ALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIE 879

Query: 501 ELLNKDENC 509
            L  +DE  
Sbjct: 880 GLTTEDERA 888



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 161/343 (46%), Gaps = 41/343 (11%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ V  N L+  +C    +  A +   R++ +  +  V T   L+  L M G+ TEA  L
Sbjct: 589 PEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYEL 648

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             +         + P+V  Y  +I+G CK+G V K   +F +M  RG+      Y +LI 
Sbjct: 649 VEEMGG----KGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALI- 703

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            Y  +      KG      +L +E V           PD++ Y ++INS      +D+A 
Sbjct: 704 -YALS-----KKGQVQETDKLFDEAVRRG------IRPDLVLYNALINSHSTSGNIDRAF 751

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           E+  +M+ + I PD V Y++L+ G CL+GR+D+ARKL   +   G  PD  +YNTLI+ Y
Sbjct: 752 EIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGY 811

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
           S    V++AL +  EM++ G  P                       L  +N L+ GLCK+
Sbjct: 812 SMKGDVKDALRIRNEMMNKGFNP----------------------TLLTYNALIQGLCKN 849

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
            +   A  + K++   G  P+  TY  +I GL  E   E+A D
Sbjct: 850 GQGDDAENMVKEMVENGITPDDSTYISLIEGLTTED--ERAID 890



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 157/332 (47%), Gaps = 22/332 (6%)

Query: 68  LNDALCFFNYMI---HMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           +++A+  F+ M+    ++P   M  +N+L+G    +      +   +R+   G+     +
Sbjct: 571 VDEAVKVFDEMLTKGEVKPEAVM--YNALIGGYCDQGKLDTALLYRDRMVERGVAMTVAT 628

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N+L++        ++A+  +  +  K  +PDV T   LI G C +G   +A  +F    
Sbjct: 629 YNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENM- 687

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
               R  V   V+ Y ++I  L K G V +   LF +   RGI PD  +YN+LI      
Sbjct: 688 ---SRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALI------ 738

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
            N     GN   A E+  E             PD ++Y +++  LC    VD+A++L  +
Sbjct: 739 -NSHSTSGNIDRAFEIMGEMEKKR------IAPDDVTYNTLMRGLCLLGRVDEARKLIDE 791

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M  RGI PD+V Y++LI GY + G + DA ++   + ++G  P   +YN LI    K  +
Sbjct: 792 MTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQ 851

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
            ++A ++  EM+  G+ PD+S  +   E   T
Sbjct: 852 GDDAENMVKEMVENGITPDDSTYISLIEGLTT 883



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 134/290 (46%), Gaps = 17/290 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L+ AL + + M+       + ++N L+ AL           L E +   GL PD  + N
Sbjct: 606 KLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYN 665

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           IL+N  CK   V  A      + R+     VVT   LI  L  +G+  E   LF + V  
Sbjct: 666 ILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAV-- 723

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             R  + P+++ Y ++I+     G +++   +  +M+ + I PD   YN+L+R  C    
Sbjct: 724 --RRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLL-- 779

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G    A +L +E      E G+   PD+++Y ++I+       V  A  +  +M 
Sbjct: 780 -----GRVDEARKLIDEMT----ERGI--QPDLVTYNTLISGYSMKGDVKDALRIRNEMM 828

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           ++G  P ++ Y++LI G C  G+ DDA  +   +   G  PD S+Y +LI
Sbjct: 829 NKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLI 878



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 96/233 (41%), Gaps = 17/233 (7%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N    E  +  AL  F  M        + ++ +L+ AL+ K        L +     G+ 
Sbjct: 669 NGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIR 728

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V  N L+N       +  AF  +G + +K  +PD VT   L+RGLC+ G+  EA  L
Sbjct: 729 PDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKL 788

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             +         + P+++ Y ++I G    G V     +  +M  +G  P    YN+LI+
Sbjct: 789 IDEMT----ERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQ 844

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
             C     +DA           E  V    E G+   PD  +Y S+I  L  +
Sbjct: 845 GLCKNGQGDDA-----------ENMVKEMVENGIT--PDDSTYISLIEGLTTE 884



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 15/128 (11%)

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE----------AAELFRTLHNTKF 402
           N L+ + + +     +L LY  M S+ + P ++  L           A  LF  +   + 
Sbjct: 426 NLLLTASAAVRPHATSLRLYSRMKSLSL-PISTASLHPLLSALPSAPAFALFADMFRLRL 484

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
            L  T FN ++  LC + +   A EL +++PR    PN VTY  +I G C  G ++ A D
Sbjct: 485 PLCTTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALD 540

Query: 463 LLPDMEEK 470
           ++ +M E+
Sbjct: 541 IMREMRER 548


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 165/351 (47%), Gaps = 32/351 (9%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           + +   GL  D V+   L+N  C+   + +A   L  +  K    D VT   LI G C  
Sbjct: 379 DEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKV 438

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           GK TEA  +  K V    +  V PNV+ Y ++ DGLCK G V     L  +M  +G+  +
Sbjct: 439 GKMTEAFLVHNKMV----QKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELN 494

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
            F YNSLI   C A N E A       +++ E  +           PDV +Y +II +LC
Sbjct: 495 IFTYNSLINGLCKAGNLEQA---MRTMIDMDEAGLK----------PDVYTYTTIIGALC 541

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           +   +D+A  L  +M  +GI P +V Y+ L++G+C+ GR++  ++L   +  +   P+T+
Sbjct: 542 QSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTT 601

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTL 397
           +YN+L+  Y   + ++    +Y  M+S  V P+ +              + EA      +
Sbjct: 602 TYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEM 661

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL--PRYGPEPNVVTYTV 446
               F L  + +N L+  L K  +   A  LF+K+   R   EP+V  + +
Sbjct: 662 IEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKDRLTAEPDVYNFYI 712



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 154/321 (47%), Gaps = 33/321 (10%)

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           L++ LC  G+  +A  LF +  +        P+V+ Y  ++ G C    +     L  +M
Sbjct: 259 LLKALCTAGRIKDAHQLFDEMAS-------PPDVVTYGIMVHGYCTLSELETAIKLLSEM 311

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
             RG+  +   Y S+I + C        +G  S A+ + E+ V      GV+   D   +
Sbjct: 312 AARGLELNPVAYTSVIALLC-------DEGQVSDAVRVVEDMVMH----GVVL--DAAVF 358

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
            ++++  C+   +  A+  F +M+ RG+  D V Y++LI+G C  G + +A ++   +E 
Sbjct: 359 TTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMED 418

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC----ILE 389
           +G   D  +Y  LI+ Y K+ K+ EA  ++ +M+   V P         D  C    +  
Sbjct: 419 KGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCA 478

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
           A EL   + +   EL++  +N L++GLCK+  L  A      +   G +P+V TYT +I 
Sbjct: 479 ANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIG 538

Query: 450 GLCIEGGIEKAYDLLPDMEEK 470
            LC    +++A+ LL +M +K
Sbjct: 539 ALCQSKELDRAHSLLQEMLDK 559



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 113/423 (26%), Positives = 190/423 (44%), Gaps = 55/423 (13%)

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           S NIL+   C    + DA      +      PDVVT G ++ G C   +   A  L ++ 
Sbjct: 255 SYNILLKALCTAGRIKDAHQLFDEM---ASPPDVVTYGIMVHGYCTLSELETAIKLLSEM 311

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
            A      +  N + Y S+I  LC +G V+    +  DM   G+  DA V+ +++  +C 
Sbjct: 312 AAR----GLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFC- 366

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                  KG+ +AA    +E      + G+    D ++Y ++IN LC+   + +A+ +  
Sbjct: 367 ------RKGDLAAARNWFDEM----QKRGLAA--DGVTYTALINGLCRAGELKEAERVLQ 414

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
           +M+ +G+  D V Y+ LIDGYC +G++ +A  +   +  +   P+  +Y  L +   K  
Sbjct: 415 EMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQG 474

Query: 364 KVEEALSLYGEMISMGVRPD----NSCI--------LEAAELFRTL---HNTKFELDLTV 408
            V  A  L  EM S G+  +    NS I        LE A   RT+        + D+  
Sbjct: 475 DVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQA--MRTMIDMDEAGLKPDVYT 532

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +  ++  LC+S  L  A  L +++   G +P +VTY V++ G C+ G +E    LL  M 
Sbjct: 533 YTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWML 592

Query: 469 EK-----------------IRECLKAIELLHK-MAKRYVKPDEITVSILEELLNKDENCH 510
           EK                 I + +K+   ++K M  + V P+E T +IL +   K  N  
Sbjct: 593 EKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMK 652

Query: 511 ECM 513
           E +
Sbjct: 653 EAL 655



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 175/386 (45%), Gaps = 39/386 (10%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V+  I+++ +C +  +  A   L  +  +    + V    +I  LC +G+ ++A  +
Sbjct: 283 PDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRV 342

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
               V       V+ +   + +++ G C+ G +   R  F +M+ RG+  D   Y +LI 
Sbjct: 343 VEDMVMH----GVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALIN 398

Query: 240 VYCCAVNWEDA---------KGNTSAAL-------------ELHEEFVNGNGELGVICHP 277
             C A   ++A         KG    A+             ++ E F+  N  +     P
Sbjct: 399 GLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTP 458

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           +V++Y ++ + LCK   V  A EL  +M S+G+  ++  Y+SLI+G C  G ++ A +  
Sbjct: 459 NVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTM 518

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSCIL 388
           + ++  G  PD  +Y T+I +  + ++++ A SL  EM+  G++P         +  C+ 
Sbjct: 519 IDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMS 578

Query: 389 EAAELFRTLHNTKFELDL----TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
              E  + L     E ++    T +N L+   C    ++S  E++K +      PN  TY
Sbjct: 579 GRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTY 638

Query: 445 TVMICGLCIEGGIEKAYDLLPDMEEK 470
            ++I G C    +++A     +M EK
Sbjct: 639 NILIKGHCKARNMKEALYFHSEMIEK 664



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 131/322 (40%), Gaps = 55/322 (17%)

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           N   Y  ++  LC  G +     LF +M      PD   Y  ++  YC     E      
Sbjct: 252 NTCSYNILLKALCTAGRIKDAHQLFDEMASP---PDVVTYGIMVHGYCTLSELE------ 302

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
             A++L  E      EL  +      +Y S+I  LC +  V  A  +  DM   G++ D 
Sbjct: 303 -TAIKLLSEMAARGLELNPV------AYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDA 355

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
            V+++++ G+C  G +  AR  F  ++  G   D  +Y  LIN   +  +++EA  +  E
Sbjct: 356 AVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQE 415

Query: 375 MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
           M   G+                      ++D   +  L+DG CK  ++  A+ +  K+ +
Sbjct: 416 MEDKGL----------------------DVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQ 453

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEI 494
               PNVVTYT +  GLC +G +                   A ELLH+M  + ++ +  
Sbjct: 454 KRVTPNVVTYTALSDGLCKQGDV-----------------CAANELLHEMCSKGLELNIF 496

Query: 495 TVSILEELLNKDENCHECMNLL 516
           T + L   L K  N  + M  +
Sbjct: 497 TYNSLINGLCKAGNLEQAMRTM 518



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 131/319 (41%), Gaps = 61/319 (19%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL  D V+  +L++ +CK+  +++AF+   ++++K  +P+VVT   L  GLC QG    A
Sbjct: 420 GLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAA 479

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
           + L  +     C   +  N+  Y S+I+GLCK G + +     +DM   G+ PD + Y +
Sbjct: 480 NELLHEM----CSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTT 535

Query: 237 LIRVYCCAVNWEDAKGNTSAALE--LHEEFVNGNGELGVIC------------------- 275
           +I   C +   + A       L+  +    V  N  +   C                   
Sbjct: 536 IIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKN 595

Query: 276 -HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM------- 327
            HP+  +Y S++   C +  +    E++  M S+ ++P+   Y+ LI G+C         
Sbjct: 596 IHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEAL 655

Query: 328 ----------------------------GRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
                                        +  +AR+LF  +  +    +   YN  I+  
Sbjct: 656 YFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKDRLTAEPDVYNFYIDLS 715

Query: 360 SKIEKVEEALSLYGEMISM 378
              + +E  L+L  E++ +
Sbjct: 716 FNEDNLESTLALCDELVEV 734



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 94/234 (40%), Gaps = 17/234 (7%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++NSL+  L         +     ++  GL PD  +   ++   C+   +  A   L  +
Sbjct: 497 TYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEM 556

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
           L K   P +VT   L+ G CM G+      L    +      N+ PN   Y S++   C 
Sbjct: 557 LDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWML----EKNIHPNTTTYNSLMKQYCI 612

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           +  +     ++  M  + + P+   YN LI+ +C A N ++       AL  H E +   
Sbjct: 613 EKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKE-------ALYFHSEMIEKG 665

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
             L         SY ++I  L K     +A+ LF  M+   +  +  VY+  ID
Sbjct: 666 FRLTAS------SYNALIRLLNKKKKFTEARRLFEKMRKDRLTAEPDVYNFYID 713



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 7/166 (4%)

Query: 78  MIHMQPTPFMP---SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           MI M      P   ++ +++GAL   K       L + +   G+ P  V+ N+LMN FC 
Sbjct: 518 MIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCM 577

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
              V      L  +L K   P+  T   L++  C++      + ++   ++ +    V+P
Sbjct: 578 SGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQE----VVP 633

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
           N   Y  +I G CK   + +      +M  +G    A  YN+LIR+
Sbjct: 634 NENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRL 679


>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Brachypodium distachyon]
          Length = 554

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 174/361 (48%), Gaps = 33/361 (9%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ P+    N+LM  F ++  +  A      + R V  P VVT   LI G+C        
Sbjct: 181 GMAPETRLFNVLMRDFVRLGELVSARKVFDEMRRSV-QPTVVTFNTLISGMCRARDLDAV 239

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
            GL+ +         V P+V  Y ++I G C+ G +     +F +M+  G+ P+A V+ +
Sbjct: 240 DGLYKEMSDV----GVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTT 295

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEF-VNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           LI  +C        +GN +A ++L+++  V G         PD+++Y +++N LC+   +
Sbjct: 296 LIDAHC-------KEGNVNAGMDLYQDMRVRG-------VMPDLVAYNALVNGLCRARNL 341

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
             A+ +  +MK+ G+ PD V Y++LIDG C  G++D A  +   +  +    D  +Y  L
Sbjct: 342 KAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTAL 401

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKF 402
           I+  SK  +  +A  +  EM+   + PDN+              +    +L + + N   
Sbjct: 402 ISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGK 461

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
           +  +  +N +++GLCK  ++++A  L   +   G  P+ +TY +++ G C  G +  + +
Sbjct: 462 KPGVVTYNVIMNGLCKLGQMKNADMLLHAMLNIGVSPDDITYNILLDGQCKHGKVANSEE 521

Query: 463 L 463
           L
Sbjct: 522 L 522



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 189/409 (46%), Gaps = 61/409 (14%)

Query: 117 GLLPDFVSLNILM-------------NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCL 163
           GLLPD  SL +L                  ++    +A+    ++L    +P+      L
Sbjct: 133 GLLPDACSLVLLALRRGISLPAPVCSGLMSRLPSTPEAYTFYLQLLDAGMAPETRLFNVL 192

Query: 164 IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
           +R     G+   A  +F +      R +V P V+ + ++I G+C+   ++ V  L+ +M 
Sbjct: 193 MRDFVRLGELVSARKVFDEM-----RRSVQPTVVTFNTLISGMCRARDLDAVDGLYKEMS 247

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
             G+ PD + Y +LI+ +C     E+A            +  N   + GV  +P+ + + 
Sbjct: 248 DVGVKPDVYTYGALIKGFCRTGRMENAV-----------KMFNEMRDTGV--NPNAVVFT 294

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
           ++I++ CK+  V+   +L+ DM+ RG++PD+V Y++L++G C    +  A  +   +++ 
Sbjct: 295 TLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNA 354

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI-------------LEA 390
           G  PD  +Y TLI+   K  K++ A+ +  +M    V  D                 ++A
Sbjct: 355 GLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDA 414

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
             + R +     E D T +  ++D  C+   +++ ++L K++   G +P VVTY V++ G
Sbjct: 415 ERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNG 474

Query: 451 LCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           LC  G ++ A     DM            LLH M    V PD+IT +IL
Sbjct: 475 LCKLGQMKNA-----DM------------LLHAMLNIGVSPDDITYNIL 506



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 135/289 (46%), Gaps = 53/289 (18%)

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
             +L +   G+ P+  ++N L+R +          G   +A ++ +E             
Sbjct: 172 TFYLQLLDAGMAPETRLFNVLMRDFV-------RLGELVSARKVFDEMRRS-------VQ 217

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P V+++ ++I+ +C+   +D    L+ +M   G+ PDV  Y +LI G+C  GR+++A K+
Sbjct: 218 PTVVTFNTLISGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKM 277

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
           F  +   G  P+   + TLI+++ K   V   + LY +M   GV PD             
Sbjct: 278 FNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPD------------- 324

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
                    L  +N LV+GLC++  L++A  + +++   G +P+ VTYT +I G C +G 
Sbjct: 325 ---------LVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGK 375

Query: 457 IEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505
           ++ A D+                   KMA++ V  DE+T + L   L+K
Sbjct: 376 LDMAMDIK-----------------QKMAEKEVSLDEVTYTALISGLSK 407



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 138/322 (42%), Gaps = 66/322 (20%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKV-FSPDVVTLGCLIRGLCMQGKFTEASG 178
           P  V+ N L++  C+   + DA   L + +  V   PDV T G LI+G C  G+   A  
Sbjct: 218 PTVVTFNTLISGMCRARDL-DAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVK 276

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           +F +         V PN + + ++ID  CK+G VN    L+ DM+ RG+ PD   YN+L+
Sbjct: 277 MFNEMRDT----GVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALV 332

Query: 239 RVYCCAVNWEDAK----------------------------GNTSAALELHEE------- 263
              C A N + A+                            G    A+++ ++       
Sbjct: 333 NGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVS 392

Query: 264 --------FVNGNGELG--------------VICHPDVLSYCSIINSLCKDVLVDKAKEL 301
                    ++G  + G                  PD  +Y  +I++ C+   V    +L
Sbjct: 393 LDEVTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKL 452

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
             +M+++G  P VV Y+ +++G C +G++ +A  L  ++ + G  PD  +YN L++   K
Sbjct: 453 LKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAMLNIGVSPDDITYNILLDGQCK 512

Query: 362 IEKVEEALSLYGEMISMGVRPD 383
             KV  +  L     S G+ PD
Sbjct: 513 HGKVANSEELES---SKGMVPD 531



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 132/300 (44%), Gaps = 22/300 (7%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           ++G +E  +A+  FN M      P    F +L+ A   +      + L + +   G++PD
Sbjct: 267 RTGRME--NAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPD 324

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+ N L+N  C+   +  A   +  +      PD VT   LI G C  GK   A  +  
Sbjct: 325 LVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQ 384

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           K         V  + + Y ++I GL K G       +  +M    + PD   Y  +I  +
Sbjct: 385 KM----AEKEVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAF 440

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C        KG+     +L +E  N   +      P V++Y  I+N LCK   +  A  L
Sbjct: 441 C-------RKGDVKTGFKLLKEMQNKGKK------PGVVTYNVIMNGLCKLGQMKNADML 487

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
              M + G+ PD + Y+ L+DG C  G++ ++ +L     S+G +PD + Y +LI+  +K
Sbjct: 488 LHAMLNIGVSPDDITYNILLDGQCKHGKVANSEELE---SSKGMVPDFAVYTSLISELAK 544



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 100/237 (42%), Gaps = 41/237 (17%)

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A   +L +   G+ P+  +++ L+  +  +G +  ARK+F  +      P   ++NTLI
Sbjct: 169 EAYTFYLQLLDAGMAPETRLFNVLMRDFVRLGELVSARKVFDEMR-RSVQPTVVTFNTLI 227

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           +   +   ++    LY EM  +GV+PD                      +  +  L+ G 
Sbjct: 228 SGMCRARDLDAVDGLYKEMSDVGVKPD----------------------VYTYGALIKGF 265

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK------ 470
           C++ R+ +A ++F ++   G  PN V +T +I   C EG +    DL  DM  +      
Sbjct: 266 CRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDL 325

Query: 471 ------------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
                        R    A  ++ +M    +KPD++T + L +   KD      M++
Sbjct: 326 VAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDI 382


>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 907

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 110/420 (26%), Positives = 192/420 (45%), Gaps = 32/420 (7%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G+VE  +AL     +     +P +  +N+L+ +L   + +     L +R+  IGL P+
Sbjct: 344 KRGKVE--EALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPN 401

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+ +IL++ FC+   +  A   LG ++     P V     LI G C  G  + A  L  
Sbjct: 402 DVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMA 461

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           + +       + P V+ Y S++ G C  G +NK   L+ +M G+GI P  + + +L+   
Sbjct: 462 EMI----NKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGL 517

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
             A       G    A++L  E    N        P+ ++Y  +I   C++  + KA E 
Sbjct: 518 FRA-------GLIRDAVKLFTEMAEWN------VKPNRVTYNVMIEGYCEEGNMSKAFEF 564

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
             +M  +GI+PD   Y  LI G CL G+  +A+     +    C  +   Y  L++ + +
Sbjct: 565 LNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCR 624

Query: 362 IEKVEEALSLYGEMISMGVRPDNSC---ILEAA----------ELFRTLHNTKFELDLTV 408
             K+EEALS+  +M   GV  D  C   +++ +           L + +H+   + D  +
Sbjct: 625 EGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLKEMHDRGLKPDDVI 684

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +  ++D   K+   + A+ ++  +   G  PN VTYT +I GLC  G + +A  L   M 
Sbjct: 685 YTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMR 744



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 139/501 (27%), Positives = 218/501 (43%), Gaps = 87/501 (17%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLL-GALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
           +L+ AL F   MI M   P +  +NSL+ G             ++E +N   L P  V+ 
Sbjct: 417 KLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINK-KLEPTVVTY 475

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
             LM  +C    ++ A      +  K   P + T   L+ GL   G   +A  LFT+   
Sbjct: 476 TSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAE 535

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
           +    NV PN + Y  +I+G C++G ++K      +M  +GI PD + Y  LI   C   
Sbjct: 536 W----NVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLT- 590

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHP-------------DVLSYCSI------- 285
                 G  S A    +    GN EL  IC+              + LS C         
Sbjct: 591 ------GQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQDMGLRGVD 644

Query: 286 INSLCKDVLVD-----KAKELFL----DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           ++ +C  VL+D     K +++FL    +M  RG+ PD V+Y+S+ID     G   +A  +
Sbjct: 645 LDLVCYGVLIDGSLKHKDRKVFLGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGI 704

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS--------CIL 388
           +  + +EGC+P+  +Y  +IN   K   V EA     E++   +RP NS        C L
Sbjct: 705 WDLMINEGCVPNEVTYTAVINGLCKAGFVNEA-----EILCSKMRPGNSVPNQVTYGCFL 759

Query: 389 E-----AAELFRT--LHNTKFE---LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
           +       ++ +   LHN   +    +   +N L+ G C+  R+  A EL  ++   G  
Sbjct: 760 DILTKGVGDMKKAVELHNAILKGLLANTATYNMLIRGFCRQGRMEEASELITRMIGDGVS 819

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-IR-----------------ECLKAIEL 480
           P+ +TYT MI  LC    ++KA +L   M EK IR                 E  KA EL
Sbjct: 820 PDCITYTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATEL 879

Query: 481 LHKMAKRYVKPD----EITVS 497
            ++M ++ +KP+    E T+S
Sbjct: 880 RNEMLRQGLKPNTETSETTIS 900



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 111/399 (27%), Positives = 171/399 (42%), Gaps = 51/399 (12%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +  + LLP+  +L+ L++   K      A      ++     PDV     +IR LC    
Sbjct: 183 MTKVSLLPEVRTLSALLHGLVKFRHFGLAMELFDDMINVGIRPDVYIYTGVIRSLCELKD 242

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
            + A  +  +  A  C  N++P    Y  +IDGLCK   V +   +  D+ G+ + PD  
Sbjct: 243 LSRAKEMIVQMEATGCDVNIVP----YNVLIDGLCKKQKVWEAVGIKKDLAGKELKPDVV 298

Query: 233 VYNSLIRVYCCAVNWE----------------------------DAKGNTSAALELHEEF 264
            Y +L+   C    +E                              +G    AL L    
Sbjct: 299 TYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNL---- 354

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           V    E GV   P++  Y ++I+SLCK    D+A+ LF  M   G+ P+ V YS LID +
Sbjct: 355 VKRVAEFGV--SPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMF 412

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP-- 382
           C  G++D A      +   G  P    YN+LIN + K   +  A SL  EMI+  + P  
Sbjct: 413 CRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTV 472

Query: 383 -----------DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
                          I +A  L+  +        +  F  L+ GL ++  +R A +LF +
Sbjct: 473 VTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTE 532

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           +  +  +PN VTY VMI G C EG + KA++ L +M EK
Sbjct: 533 MAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEK 571



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/436 (25%), Positives = 192/436 (44%), Gaps = 48/436 (11%)

Query: 90  FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149
           +N L+  L  K+     + + + L    L PD V+   L+   CK+         +  +L
Sbjct: 265 YNVLIDGLCKKQKVWEAVGIKKDLAGKELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEML 324

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD 209
           R  FSP    +  L+ GL  +GK  EA  L  +   F     V PN+  Y ++ID LCK 
Sbjct: 325 RLRFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEF----GVSPNIFVYNALIDSLCKG 380

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
              ++  +LF  M   G+ P+   Y+ LI ++C        +G    AL    E +    
Sbjct: 381 RNFDEAELLFDRMGKIGLCPNDVTYSILIDMFC-------RRGKLDTALSFLGEMI---- 429

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
           ++G+   P V  Y S+IN  CK   +  A+ L  +M ++ + P VV Y+SL+ GYC  G+
Sbjct: 430 DMGL--KPSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGK 487

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC--- 386
           I+ A +L+  +  +G +P   ++ TL++   +   + +A+ L+ EM    V+P+      
Sbjct: 488 INKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNV 547

Query: 387 ----------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
                     + +A E    +       D   +  L+ GLC + +   A      L +  
Sbjct: 548 MIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGN 607

Query: 437 PEPNVVTYTVMICGLCIEGGIEKA------------------YDLLPDMEEKIRECLKAI 478
            E N + YT ++ G C EG +E+A                  Y +L D   K ++    +
Sbjct: 608 CELNEICYTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVFL 667

Query: 479 ELLHKMAKRYVKPDEI 494
            LL +M  R +KPD++
Sbjct: 668 GLLKEMHDRGLKPDDV 683



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 126/267 (47%), Gaps = 20/267 (7%)

Query: 95  GALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFS 154
           G+L  K   V F+ L + ++  GL PD V    +++   K     +AF     ++ +   
Sbjct: 656 GSLKHKDRKV-FLGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCV 714

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP-NVIPNVICYASIIDGLCKDGFVN 213
           P+ VT   +I GLC  G   EA  L +K      RP N +PN + Y   +D L K     
Sbjct: 715 PNEVTYTAVINGLCKAGFVNEAEILCSKM-----RPGNSVPNQVTYGCFLDILTKGVGDM 769

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
           K  V   +   +G+  +   YN LIR +C        +G    A EL    + G+G    
Sbjct: 770 KKAVELHNAILKGLLANTATYNMLIRGFC-------RQGRMEEASELITRMI-GDG---- 817

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
              PD ++Y ++I+ LC+   V KA EL+  M  +GI PD V Y++LI G C+ G +  A
Sbjct: 818 -VSPDCITYTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKA 876

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYS 360
            +L   +  +G  P+T +  T I++ S
Sbjct: 877 TELRNEMLRQGLKPNTETSETTISNDS 903



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 111/240 (46%), Gaps = 30/240 (12%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+V +  ++++ L K      A ELF DM + GI PDV +Y+ +I   C +  +  A+++
Sbjct: 190 PEVRTLSALLHGLVKFRHFGLAMELFDDMINVGIRPDVYIYTGVIRSLCELKDLSRAKEM 249

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--NSCILEAA--- 391
            V +E+ GC  +   YN LI+   K +KV EA+ +  ++    ++PD    C L      
Sbjct: 250 IVQMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKELKPDVVTYCTLVCGLCK 309

Query: 392 --------ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                   E+   +   +F       + LV+GL K  ++  A  L K++  +G  PN+  
Sbjct: 310 VQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFV 369

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELL 503
           Y  +I  LC     ++A +LL D   KI  C                P+++T SIL ++ 
Sbjct: 370 YNALIDSLCKGRNFDEA-ELLFDRMGKIGLC----------------PNDVTYSILIDMF 412



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 11/206 (5%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           ++KS   +  +A   ++ MI+    P   ++ +++  L    +      L  ++     +
Sbjct: 690 DAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSV 749

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ V+    ++   K +G     V L   + K    +  T   LIRG C QG+  EAS L
Sbjct: 750 PNQVTYGCFLDILTKGVGDMKKAVELHNAILKGLLANTATYNMLIRGFCRQGRMEEASEL 809

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
            T+ +       V P+ I Y ++I  LC+   V K   L+  M  +GI PD   YN+LI 
Sbjct: 810 ITRMIG----DGVSPDCITYTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIH 865

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFV 265
             C A       G    A EL  E +
Sbjct: 866 GCCVA-------GEMGKATELRNEML 884


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/285 (31%), Positives = 143/285 (50%), Gaps = 17/285 (5%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G LPD V+ N L+N  CK   + DA   L  +  +   PD+ T   LI G C++GK  +A
Sbjct: 46  GCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKA 105

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             LF   +    RP+++     Y ++IDG+C+ G ++K   L+ DM  R I+P+   Y+ 
Sbjct: 106 LQLFDTMLNQRLRPDIV----TYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSI 161

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI  +C        KG    A    +E +N     G++  P++++Y SII   C+   V 
Sbjct: 162 LIDSHC-------EKGQVEDAFGFLDEMINK----GIL--PNIMTYNSIIKGYCRSGNVS 208

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           K ++    M    + PD++ Y++LI GY    ++ DA KL   +E E   PD  +YN LI
Sbjct: 209 KGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLI 268

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK 401
           N +S    V+EA  ++ +M + G+ PD    +       T  N+K
Sbjct: 269 NGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSK 313



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 164/329 (49%), Gaps = 30/329 (9%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
           PD V    +I G C  G  ++A  +  + V   C    +P+V+ Y ++++GLCK+  +  
Sbjct: 14  PDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGC----LPDVVTYNTLLNGLCKERRLLD 69

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
              L  +M+ RG+ PD   + +LI  YC        +G    AL+L +  +N        
Sbjct: 70  AEGLLNEMRERGVPPDLCTFTTLIHGYC-------IEGKLDKALQLFDTMLNQR------ 116

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
             PD+++Y ++I+ +C+   +DKA +L+ DM SR I P+ V YS LID +C  G+++DA 
Sbjct: 117 LRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAF 176

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCIL-- 388
                + ++G +P+  +YN++I  Y +   V +      +M+   V PD    N+ I   
Sbjct: 177 GFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGY 236

Query: 389 -------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
                  +A +L   +   K + D+  +N L++G      ++ A  +F+K+   G EP+ 
Sbjct: 237 IKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDR 296

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            TY  MI G    G  ++A+ L  +M ++
Sbjct: 297 YTYMSMINGHVTAGNSKEAFQLHDEMLQR 325



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 155/319 (48%), Gaps = 19/319 (5%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++DAL   + M+     P + ++N+LL  L  ++  ++   L   +   G+ PD  +   
Sbjct: 32  MSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTT 91

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++ +C    +  A      +L +   PD+VT   LI G+C QG   +A+ L+    + +
Sbjct: 92  LIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSRE 151

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               + PN + Y+ +ID  C+ G V        +M  +GI P+   YNS+I+ YC     
Sbjct: 152 ----IFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYC----- 202

Query: 248 EDAKGNTSAALE-LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
               GN S   + L +  VN          PD+++Y ++I+   K+  +  A +L   M+
Sbjct: 203 --RSGNVSKGQKFLQKMMVNK-------VSPDLITYNTLIHGYIKEDKMHDAFKLLNMME 253

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
              + PDVV Y+ LI+G+ + G + +A  +F  + ++G  PD  +Y ++IN +      +
Sbjct: 254 KEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSK 313

Query: 367 EALSLYGEMISMGVRPDNS 385
           EA  L+ EM+  G  PD+ 
Sbjct: 314 EAFQLHDEMLQRGFAPDDK 332



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 149/301 (49%), Gaps = 32/301 (10%)

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
           ++P+ + Y  +I G C+ G ++    +  +M G G  PD   YN+L+   C      DA+
Sbjct: 12  LVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAE 71

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
           G            +N   E GV   PD+ ++ ++I+  C +  +DKA +LF  M ++ + 
Sbjct: 72  G-----------LLNEMRERGV--PPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLR 118

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           PD+V Y++LIDG C  G +D A  L+  + S    P+  +Y+ LI+S+ +  +VE+A   
Sbjct: 119 PDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGF 178

Query: 372 YGEMISMGVRPD----NSCIL---------EAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
             EMI+ G+ P+    NS I          +  +  + +   K   DL  +N L+ G  K
Sbjct: 179 LDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIK 238

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAI 478
             ++  A++L   + +   +P+VVTY ++I G  + G +++A  +   M      C K I
Sbjct: 239 EDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKM------CAKGI 292

Query: 479 E 479
           E
Sbjct: 293 E 293



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 156/331 (47%), Gaps = 59/331 (17%)

Query: 221 DMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVL 280
           +M+  G+ PD  +Y  +I  +C A       G  S AL + +E V      G  C PDV+
Sbjct: 6   EMRCFGLVPDGVIYTMVIGGFCRA-------GLMSDALRVRDEMV------GCGCLPDVV 52

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
           +Y +++N LCK+  +  A+ L  +M+ RG+ PD+  +++LI GYC+ G++D A +LF ++
Sbjct: 53  TYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTM 112

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNT 400
            ++   PD  +YNTLI+   +   +++A  L+ +M S  + P++                
Sbjct: 113 LNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNH---------------- 156

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
                   ++ L+D  C+  ++  A+    ++   G  PN++TY  +I G C  G + K 
Sbjct: 157 ------VTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKG 210

Query: 461 YDLL---------PDM------------EEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
              L         PD+            E+K+ +   A +LL+ M K  V+PD +T ++L
Sbjct: 211 QKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHD---AFKLLNMMEKEKVQPDVVTYNML 267

Query: 500 EELLNKDENCHECMNLLPSFLSRNQEESKLT 530
               +   N  E   +     ++  E  + T
Sbjct: 268 INGFSVHGNVQEAGWIFEKMCAKGIEPDRYT 298


>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
 gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
          Length = 820

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 106/420 (25%), Positives = 192/420 (45%), Gaps = 52/420 (12%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P   + N L+   C+   +  A   L  ++R  + PD  T   LI G C   +   A  L
Sbjct: 127 PTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLDVAQDL 186

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F K            + + YA++I+G C+ G V++   LF +++     PD + + +L++
Sbjct: 187 FDKMPL----RGFSQDAVSYAALIEGFCETGRVDEALELFRELE----QPDMYTHAALVK 238

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C      DA+        L +       ELG    P   +Y ++++  C++   ++A+
Sbjct: 239 GLC------DARRGEEGLYMLQK-----MKELG--WRPATRAYAALVDLWCREQKAEEAE 285

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           ++  +M   G++P  V  +++++ YC  GR+  A ++F S++ +GC P+  +YN ++  +
Sbjct: 286 KMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGF 345

Query: 360 SKIEKVEEALSLYGEMISMGVRPD---------NSCI---LEAA-ELFRTLHNTKFELDL 406
             + KV +A++L  +M   GV PD           CI   +E+A  L R +       D 
Sbjct: 346 CNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQ 405

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA------ 460
             +N L+D LCK+ ++  A  LF  L   G  PN VT+  +I GLC  G  + A      
Sbjct: 406 YTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEK 465

Query: 461 ----------YDLLPDMEE--KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDEN 508
                     Y   P +E   K +   + +  + +M ++ VKP  +  +I+ + L K+ N
Sbjct: 466 MVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERN 525



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 142/325 (43%), Gaps = 17/325 (5%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N+   E  ++ A+  F  M      P + ++N+++            + L +++   G+ 
Sbjct: 308 NAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVE 367

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V+ N+L+   C    +  AF  L  +     + D  T   LI  LC  GK  EA  L
Sbjct: 368 PDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSL 427

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F        RPN +     + ++I+GLCK G  +        M   G  PD + Y+  I 
Sbjct: 428 FDGLEYRGIRPNSV----TFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIE 483

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C        KG +   L   +E +  +        P  ++Y  +I+ L K+     A 
Sbjct: 484 NLC------KTKG-SREGLSFIDEMLQKD------VKPSTVNYTIVIDRLFKERNYGLAT 530

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            ++  M S G  PDVV Y++ +  YC  GR+ +A  + + ++  G I D  +YNTLI+ +
Sbjct: 531 RIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLIDGH 590

Query: 360 SKIEKVEEALSLYGEMISMGVRPDN 384
           + I K + A+++   M  +   P++
Sbjct: 591 TSIGKTDHAVTILKHMTGVASMPNH 615



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 84/426 (19%), Positives = 169/426 (39%), Gaps = 70/426 (16%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGAL-AGKKYYVNFICLSERLNTIGLLP 120
           K+G+V  ++A   F+ + +    P   +FN+++  L  G K+ V    L E++ + G  P
Sbjct: 417 KTGKV--DEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFL-EKMVSAGCAP 473

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           D  + +  +   CK  G  +    +  +L+K   P  V    +I  L  +  +  A+ ++
Sbjct: 474 DTYTYSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIW 533

Query: 181 TKFVAFDCRPNV-------------------------------IPNVICYASIIDGLCKD 209
            + V+  C P+V                               I + + Y ++IDG    
Sbjct: 534 GQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLIDGHTSI 593

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSA---ALELHEEFVN 266
           G  +    +   M G    P+ F +  L+R        ED    T++    +EL + F  
Sbjct: 594 GKTDHAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAEDVPLKTTSVWKTIELADVF-- 651

Query: 267 GNGELGVICHPDVL-----SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
              EL  +   + +     +Y +I+    ++  +D+   L   MK   +  +  +Y+SL+
Sbjct: 652 ---ELFELMKKNSVPSSARAYLAILEGFSEERRLDEVTSLVSHMKEDDLPLNEDIYTSLV 708

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
           + +C +    DA  L  S+   G +P+  SY  L++ ++   + +               
Sbjct: 709 NCFCKLRMYPDAWALLCSMIGHGFLPNLISYQYLLSGFTAEGQAD--------------- 753

Query: 382 PDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
                   A E+FR L   ++  D  V+  ++DGL +        ++   L +   +P+ 
Sbjct: 754 -------RAKEIFRGLRWKEYNTDEIVWKIIIDGLIRQGHPDMCHDMISILEQMKCKPSD 806

Query: 442 VTYTVM 447
            TY ++
Sbjct: 807 ETYAML 812



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 14/176 (7%)

Query: 189 RPNVIPN-VICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           + N +P+    Y +I++G  ++  +++V  L   MK   +  +  +Y SL+  +C    +
Sbjct: 658 KKNSVPSSARAYLAILEGFSEERRLDEVTSLVSHMKEDDLPLNEDIYTSLVNCFCKLRMY 717

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
            DA     + +        G+G L     P+++SY  +++    +   D+AKE+F  ++ 
Sbjct: 718 PDAWALLCSMI--------GHGFL-----PNLISYQYLLSGFTAEGQADRAKEIFRGLRW 764

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
           +    D +V+  +IDG    G  D    +   +E   C P   +Y  L    S  E
Sbjct: 765 KEYNTDEIVWKIIIDGLIRQGHPDMCHDMISILEQMKCKPSDETYAMLTEELSTRE 820


>gi|297723047|ref|NP_001173887.1| Os04g0351333 [Oryza sativa Japonica Group]
 gi|255675359|dbj|BAH92615.1| Os04g0351333 [Oryza sativa Japonica Group]
          Length = 740

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 126/491 (25%), Positives = 215/491 (43%), Gaps = 59/491 (12%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLN------TIGLLPDF 122
           N+A C F+ M+   P P + S++++L   A         CL++  N      T G+ P+ 
Sbjct: 205 NEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDS----CLADVHNIFNLMLTKGIAPNK 260

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
              NIL+N + +   +  A +    +  K   PD VT   +I  LC  G+  +A   F  
Sbjct: 261 HVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNH 320

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVY-NSLIRVY 241
            V       V P+   Y  +I G C  G + K + L  +M  + I P    Y +S+I   
Sbjct: 321 MVDI----GVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNL 376

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C        +G  +   ++ +  V   G+      P+V+++ S++   C    +++A  L
Sbjct: 377 C-------KEGRVAEGKDIMDMMVQ-TGQ-----RPNVVTFNSLMEGYCLVGNMEEAFAL 423

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
              M S GI P+  +Y +L+DGYC  GRIDDA  +F  +  +G  P +  Y+ +++   +
Sbjct: 424 LDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQ 483

Query: 362 IEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTV 408
             +   A  ++ EMI  G                 N+C  EA  L   L     + D+  
Sbjct: 484 ARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIIT 543

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           FN ++  + K  R + A ELF  +  YG  PN+ TY++MI  L  E   E+A +L   +E
Sbjct: 544 FNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVE 603

Query: 469 EK------------IR------ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCH 510
           +             +R      E  KA   L  + +  +  +  T+S+L  L +++    
Sbjct: 604 KSGHASDSRLLNHIVRMLLNKAEVAKASNYLSIIGENNLTLEASTISLLASLFSREGKYR 663

Query: 511 ECMNLLPSFLS 521
           E + LLP+ ++
Sbjct: 664 EHIKLLPANMT 674



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/423 (25%), Positives = 189/423 (44%), Gaps = 31/423 (7%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K GEV+   A C F  M+     P +   NS++  L   K       + +++   G+ PD
Sbjct: 60  KDGEVD--KAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPD 117

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             + +++++  CK   +  A   L +++     P+ +T   LI G  + G + E+  +F 
Sbjct: 118 LFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFK 177

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           +  +  C   VIP V    S I  L K G  N+ + +F  M  +G  PD   Y++++  Y
Sbjct: 178 QMSS--C--GVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGY 233

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
             A +        S   ++H  F   N  L     P+   +  +IN+  +  ++DKA  +
Sbjct: 234 ATATD--------SCLADVHNIF---NLMLTKGIAPNKHVFNILINAYARCGMMDKAMLI 282

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F DM+++G+IPD V ++++I   C +GR+DDA   F  +   G  P  + Y  LI     
Sbjct: 283 FEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCN 342

Query: 362 IEKVEEALSLYGEMISMGVRP----------DNSC----ILEAAELFRTLHNTKFELDLT 407
             ++ +A  L  EM++  + P          +N C    + E  ++   +  T    ++ 
Sbjct: 343 HGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVV 402

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            FN L++G C    +  A+ L   +   G EPN   Y  ++ G C  G I+ A  +  DM
Sbjct: 403 TFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDM 462

Query: 468 EEK 470
             K
Sbjct: 463 LHK 465



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 186/394 (47%), Gaps = 43/394 (10%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           RL   GL PD  S +++   F K   V  A      ++ +   P ++    +I+ LC   
Sbjct: 39  RLLKNGLGPDDFSYSLIYG-FVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMK 97

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
           +  +A  +  K V       + P++  Y+ IIDGLCK   ++K   +   M   G  P++
Sbjct: 98  EMDKAESIVQKMV----DSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNS 153

Query: 232 FVYNSLIRVYCCAVNWEDA----KGNTSAALE---------LHEEFVNG-NGELGVIC-- 275
             YNSLI  Y  +  W ++    K  +S  +          +H  F +G   E   I   
Sbjct: 154 ITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDS 213

Query: 276 ------HPDVLSYCSIIN--SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
                  PD++SY ++++  +   D  +     +F  M ++GI P+  V++ LI+ Y   
Sbjct: 214 MVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARC 273

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS-- 385
           G +D A  +F  ++++G IPDT ++ T+I+S  +I ++++AL  +  M+ +GV P  +  
Sbjct: 274 GMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVY 333

Query: 386 -CILE----------AAELFRTLHNTKF-ELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
            C+++          A EL   + N       +  F+ +++ LCK  R+    ++   + 
Sbjct: 334 GCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMV 393

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           + G  PNVVT+  ++ G C+ G +E+A+ LL  M
Sbjct: 394 QTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAM 427



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 101/405 (24%), Positives = 171/405 (42%), Gaps = 86/405 (21%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P   + NIL++C+                 R+V  PD+        GL + G+  + +GL
Sbjct: 12  PTIHTYNILIDCY-----------------RRVHRPDL--------GLAIVGRLLK-NGL 45

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
                         P+   Y S+I G  KDG V+K   LFL+M  +G+ P   + NS+I+
Sbjct: 46  G-------------PDDFSY-SLIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIK 91

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C     + A           E  V    + G+   PD+ +Y  II+ LCK   +DKA+
Sbjct: 92  ELCKMKEMDKA-----------ESIVQKMVDSGIA--PDLFTYSLIIDGLCKSKAMDKAE 138

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            +   M   G  P+ + Y+SLI GY + G  +++ ++F  + S G IP   + N+ I++ 
Sbjct: 139 RVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHAL 198

Query: 360 SKIEKVEEALSLYGEMISMGVRPD---------------NSCILEAAELFRTLHNTKFEL 404
            K  +  EA  ++  M+  G +PD               +SC+ +   +F  +       
Sbjct: 199 FKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAP 258

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           +  VFN L++   +   +  A  +F+ +   G  P+ VT+  +I  LC  G ++ A    
Sbjct: 259 NKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKF 318

Query: 465 PDM-------EEKIRECL-----------KAIELLHKMAKRYVKP 491
             M        E +  CL           KA EL+ +M  + + P
Sbjct: 319 NHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPP 363


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 117/462 (25%), Positives = 195/462 (42%), Gaps = 86/462 (18%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAG-------KKYYVNFICLSERLNTIGLLP 120
             +AL  F+ M   +  P   S N LL   A        K+++ + I         G  P
Sbjct: 79  FEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRFFKDMI-------GAGSKP 131

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
              + NI+++C CK   +  A      +  +   PD VT   +I G    G+  +    F
Sbjct: 132 TVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFF 191

Query: 181 TKFVAFDCRPNVI-------------------------------PNVICYASIIDGLCKD 209
            +  +  C P+VI                               PNV+ Y++++D  CK+
Sbjct: 192 EEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKE 251

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
             + +    ++DM+  G+ P+   Y SL+  YC         GN S A  L +E      
Sbjct: 252 DMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYC-------KIGNLSDAFRLADEM----S 300

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
           ++GV    +V++Y ++I+ LC    + +A+ELF  M + G+IP++  Y++LI G+     
Sbjct: 301 QVGV--EWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKN 358

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE 389
           +D A +L   ++  G  PD   Y T I S   +EK+E A  +  EM   G++ +      
Sbjct: 359 MDRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTF---- 414

Query: 390 AAELFRTLHNTKFE--------------------LDLTVFNCLVDGLCKSWRLRSAWELF 429
              ++ TL +  F+                    +    F  L+DGLCK+  +  A + F
Sbjct: 415 ---IYTTLMDAYFKSENPSEGLHLLEEMLELDIEVTAVTFCVLIDGLCKNKLVSKAIDYF 471

Query: 430 KKLPR-YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            ++   +G + N   YT MI GLC E  +E A  L   M +K
Sbjct: 472 GRISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLFEQMAQK 513



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 115/465 (24%), Positives = 204/465 (43%), Gaps = 62/465 (13%)

Query: 74  FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
           FF  MI     P + ++N ++  +  +        L E +   GL+PD V+ N +++ + 
Sbjct: 120 FFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYG 179

Query: 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
           K+  + D       +      PDV+T   LI   C  GK  +    F +      +  + 
Sbjct: 180 KVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMK----QSGLK 235

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           PNV+ Y++++D  CK+  + +    ++DM+  G+ P+   Y SL+  YC         GN
Sbjct: 236 PNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYC-------KIGN 288

Query: 254 TSAALELHEEFVNGNGELGVICH-----------------------------PDVLSYCS 284
            S A  L +E      E  V+ +                             P++ SY +
Sbjct: 289 LSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTA 348

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           +I+   K   +D+A EL  +MK RGI PD+++Y + I   C + +I+ A+ +   ++ +G
Sbjct: 349 LIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKG 408

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEM---------ISMGVRPDNSC----ILEAA 391
              +T  Y TL+++Y K E   E L L  EM         ++  V  D  C    + +A 
Sbjct: 409 IKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIEVTAVTFCVLIDGLCKNKLVSKAI 468

Query: 392 ELFRTLHNT-KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
           + F  + N    + +  ++  ++DGLCK  ++ +A  LF+++ + G  P+   YT +I G
Sbjct: 469 DYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLFEQMAQKGLVPDRTAYTSLIDG 528

Query: 451 LCIEGGIEKAYDLLPDMEEKIRE--------CLKAIELLHKMAKR 487
              +G + +A  L   M E   E        C   I+L  +M  R
Sbjct: 529 KLKQGNVVQALALRDKMAEIGVESGARFGDLCQNTIKLSLRMGAR 573



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 129/253 (50%), Gaps = 31/253 (12%)

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
           +G    P V +Y  +I+ +CK+  ++ A  LF +MK RG+IPD V Y+S+IDGY  +GR+
Sbjct: 125 IGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRL 184

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP-------- 382
           DD    F  ++S  C PD  +YNTLIN + K  K+ + L  + EM   G++P        
Sbjct: 185 DDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTL 244

Query: 383 -DNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
            D  C    + +A + +  +       +   +  LVD  CK   L  A+ L  ++ + G 
Sbjct: 245 VDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGV 304

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDL---------LPDMEE---------KIRECLKAIE 479
           E NVVTYT +I GLC    I++A +L         +P++           K +   +A+E
Sbjct: 305 EWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALE 364

Query: 480 LLHKMAKRYVKPD 492
           LL +M  R +KPD
Sbjct: 365 LLDEMKGRGIKPD 377



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 158/340 (46%), Gaps = 33/340 (9%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L   L FF  M      P + S+++L+ A   +      +     +  +GL+P+  +  
Sbjct: 218 KLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYT 277

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ +CK+  +SDAF     + +     +VVT   LI GLC   +  EA  LF K V  
Sbjct: 278 SLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVT- 336

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                VIPN+  Y ++I G  K   +++   L  +MKGRGI PD  +Y + I   C    
Sbjct: 337 ---AGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEK 393

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVIC--------HPD-----------------VLS 281
            E AK       E+ E+ +  N  +            +P                   ++
Sbjct: 394 IEAAK---VVMNEMQEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIEVTAVT 450

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSR-GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
           +C +I+ LCK+ LV KA + F  + +  G+  +  +Y+++IDG C   +++ A  LF  +
Sbjct: 451 FCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLFEQM 510

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
             +G +PD ++Y +LI+   K   V +AL+L  +M  +GV
Sbjct: 511 AQKGLVPDRTAYTSLIDGKLKQGNVVQALALRDKMAEIGV 550


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 121/465 (26%), Positives = 210/465 (45%), Gaps = 48/465 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           + +AL  F  M      P +P++N L+  L  +      + + + +   GL P+ +++NI
Sbjct: 141 VEEALRIFEEM-KRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNI 199

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           +++  CK   + +A      +  KV +P+ VT   LI GL   G+  +A  L+ K +  D
Sbjct: 200 MIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKML--D 257

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C    +P  I Y S+I    K G       ++ +M   G  PD  + N+ +     A   
Sbjct: 258 C--GHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKA--- 312

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               G T     L  E +N +G +     PD  SY  +I+ L K  L ++  ELF  MK 
Sbjct: 313 ----GETEKGRALFRE-INAHGFI-----PDARSYSILIHGLVKAGLANETYELFYAMKE 362

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           +G + D   Y+++IDG+C  G+++ A +L   ++ +G  P   +Y ++I+  +KI++++E
Sbjct: 363 QGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDE 422

Query: 368 ALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDLTVFNCLVD 414
           A  L+ E  S G++ +                I EA  +   L       ++  +NCL+D
Sbjct: 423 AYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLD 482

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC 474
            L K+  +  A   F+ +      PN +TY+++I GLC                 ++R+ 
Sbjct: 483 ALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLC-----------------RVRKF 525

Query: 475 LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519
            KA     +M K  +KP+ IT + +   L K  N  E   L   F
Sbjct: 526 NKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRF 570



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/399 (27%), Positives = 182/399 (45%), Gaps = 41/399 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L +A   F  M     TP   +F+SL+  L       +   L E++   G +P  +   
Sbjct: 209 KLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYT 268

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+  F K     D       ++    SPD+  +   +  +   G+  +   LF +  A 
Sbjct: 269 SLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAH 328

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                 IP+   Y+ +I GL K G  N+   LF  MK +G   D   YN++I  +C    
Sbjct: 329 ----GFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFC---- 380

Query: 247 WEDAKGNTSAALELHEEF-VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
                G  + A +L EE  V G+        P V++Y S+I+ L K   +D+A  LF + 
Sbjct: 381 ---KSGKVNKAYQLLEEMKVKGH-------PPTVVTYGSVIDGLAKIDRLDEAYMLFEEA 430

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
           KS GI  +VVVYSSLIDG+  +GRID+A  +   +  +G  P+  ++N L+++  K E++
Sbjct: 431 KSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEI 490

Query: 366 EEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
            EAL  +  M  +   P+                         ++ L++GLC+  +   A
Sbjct: 491 NEALICFQSMKDLKCPPNQ----------------------ITYSILINGLCRVRKFNKA 528

Query: 426 WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           +  ++++ + G +PN +TYT MI GL   G I +A  L 
Sbjct: 529 FVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLF 567



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 155/334 (46%), Gaps = 33/334 (9%)

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD 209
           RKV  P       +I G    GKF EA GL  +  A       IP+VI Y  I+  L K 
Sbjct: 85  RKV--PCAYAYNTMIMGYGSAGKFDEAYGLLERQKA----KGSIPSVIAYNCILTCLGKK 138

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
             V +   +F +MK R   P+   YN LI + C        +G  +AALE+ ++      
Sbjct: 139 RRVEEALRIFEEMK-RDAVPNVPTYNILIDMLC-------REGKLNAALEIRDDMERAG- 189

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
                  P+VL+   +I+ LCK   +++A  +F  M  +   P+ V +SSLIDG    GR
Sbjct: 190 -----LFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGR 244

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS---- 385
           +DDA  L+  +   G +P    Y +LI S+ K  + E+   +Y EM+  G  PD +    
Sbjct: 245 VDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINT 304

Query: 386 ---CILEAAE------LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
              C+ +A E      LFR ++   F  D   ++ L+ GL K+      +ELF  +   G
Sbjct: 305 YMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQG 364

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
              +   Y  +I G C  G + KAY LL +M+ K
Sbjct: 365 CVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVK 398



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/418 (26%), Positives = 192/418 (45%), Gaps = 44/418 (10%)

Query: 75  FNYMIHMQPTPFMPSFNS---LLGALAGKKYYVNFICLSERLNTIGLL----------PD 121
           F+ +  M+   F P+F++   L+G +     +   +C + RL+    L          P 
Sbjct: 30  FDIIQTMRKFKFRPAFSAYTILIGKVGLMLLFPWVLCKANRLDEAVELFEQLEQNRKVPC 89

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             + N ++  +       +A+  L R   K   P V+   C++  L  + +  EA  +F 
Sbjct: 90  AYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFE 149

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           +      + + +PNV  Y  +ID LC++G +N    +  DM+  G++P+    N +I   
Sbjct: 150 EM-----KRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRL 204

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C A   E+A     +  E  ++ V         C P+ +++ S+I+ L K   VD A  L
Sbjct: 205 CKAQKLEEA----CSIFEGMDDKV---------CTPNAVTFSSLIDGLGKCGRVDDAYSL 251

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           +  M   G +P  +VY+SLI  +   GR +D  K++  +   GC PD +  NT ++   K
Sbjct: 252 YEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFK 311

Query: 362 IEKVEEALSLYGEMISMGVRPD--NSCIL-----------EAAELFRTLHNTKFELDLTV 408
             + E+  +L+ E+ + G  PD  +  IL           E  ELF  +      LD   
Sbjct: 312 AGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHA 371

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
           +N ++DG CKS ++  A++L +++   G  P VVTY  +I GL     +++AY L  +
Sbjct: 372 YNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEE 429



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 153/318 (48%), Gaps = 29/318 (9%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALA----GKKYYVNFICLSERLNTIG 117
           K+GE E   AL  F  +      P   S++ L+  L       + Y  F  + E+    G
Sbjct: 311 KAGETEKGRAL--FREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQ----G 364

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
            + D  + N +++ FCK   V+ A+  L  +  K   P VVT G +I GL    +  EA 
Sbjct: 365 CVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAY 424

Query: 178 GLFTKFVAFDCRPNVIP-NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
            LF      + + N I  NV+ Y+S+IDG  K G +++  ++  ++  +G+ P+ + +N 
Sbjct: 425 MLFE-----EAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNC 479

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           L+          DA      A E++E  +       + C P+ ++Y  +IN LC+    +
Sbjct: 480 LL----------DA---LVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFN 526

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           KA   + +M+  G+ P+ + Y+++I G    G I +A  LF   ++ G IPD++SYN +I
Sbjct: 527 KAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMI 586

Query: 357 NSYSKIEKVEEALSLYGE 374
              S   K  +A +L+ E
Sbjct: 587 EGLSSANKAMDAYALFEE 604



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 176/409 (43%), Gaps = 54/409 (13%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIGLLPDFVSL 125
           ++DA   +  M+     P    + SL+ +    G+K   + I   E ++T G  PD   +
Sbjct: 245 VDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKI-YKEMVHT-GCSPDLTLI 302

Query: 126 NILMNCFCKMIGVSDAFVALGR-ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
           N  M+C  K  G ++   AL R I    F PD  +   LI GL   G   E   LF    
Sbjct: 303 NTYMDCVFKA-GETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMK 361

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI------ 238
              C    + +   Y ++IDG CK G VNK   L  +MK +G  P    Y S+I      
Sbjct: 362 EQGC----VLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKI 417

Query: 239 -RVYCCAVNWEDAKGN-TSAALELHEEFVNGNGELGVI--------------CHPDVLSY 282
            R+    + +E+AK N     + ++   ++G G++G I                P+V ++
Sbjct: 418 DRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTW 477

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
             ++++L K   +++A   F  MK     P+ + YS LI+G C + + + A   +  ++ 
Sbjct: 478 NCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQK 537

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF 402
            G  P+T +Y T+I+  +K   + EA  L+    + G  PD++                 
Sbjct: 538 LGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSAS---------------- 581

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
                 +N +++GL  + +   A+ LF++    G   +  T  V++  L
Sbjct: 582 ------YNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVLLDAL 624



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 23/183 (12%)

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           LCK   +D+A ELF  ++    +P    Y+++I GY   G+ D+A  L    +++G IP 
Sbjct: 65  LCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPS 124

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTV 408
             +YN ++    K  +VEEAL ++ EM    V                        ++  
Sbjct: 125 VIAYNCILTCLGKKRRVEEALRIFEEMKRDAVP-----------------------NVPT 161

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +N L+D LC+  +L +A E+   + R G  PNV+T  +MI  LC    +E+A  +   M+
Sbjct: 162 YNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMD 221

Query: 469 EKI 471
           +K+
Sbjct: 222 DKV 224


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 110/382 (28%), Positives = 173/382 (45%), Gaps = 67/382 (17%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           SK GE++    L        ++ +P+  ++N L+     K   V  + L E + T G+ P
Sbjct: 283 SKKGELQQAKGLIQEMAKAGLRVSPY--TYNPLICGYCKKGLLVEALALWEEMVTRGVSP 340

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
              S N +M  FCK   +SDA   L  +L+K   PD+++   LI G C  G   EA    
Sbjct: 341 TVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEA---- 396

Query: 181 TKFVAFD--CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
             F+  D     N+  N++ Y ++IDGLC+ G +     L  DM  RGI+PD   Y  L+
Sbjct: 397 --FILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLV 454

Query: 239 RVYCCAVNWEDAK----------------------------GNTSAALELHEE------- 263
              C   N   AK                            G+T+ A +L EE       
Sbjct: 455 NGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFP 514

Query: 264 --------FVNGNGELGVICH--------------PDVLSYCSIINSLCKDVLVDKAKEL 301
                   FVNG  +LG +                PD ++Y S +++  ++  + + +E+
Sbjct: 515 PDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREI 574

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F DM SRG  P VV Y+ LI  + L GR+D A   F+ ++ +G +P+  +YN LIN + K
Sbjct: 575 FYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFCK 634

Query: 362 IEKVEEALSLYGEMISMGVRPD 383
           + K+++A   + EM   G+ P+
Sbjct: 635 VRKMDQACKFFIEMQEKGIFPN 656



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 171/384 (44%), Gaps = 78/384 (20%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLL-GALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           L +AL  +  M+    +P + S N+++ G     K       LS+ L    L+PD +S N
Sbjct: 323 LVEALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKK-NLMPDIISYN 381

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+  FC++  + +AF+ L  +  +  S ++VT   LI GLC  G    A  L    +  
Sbjct: 382 TLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMI-- 439

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                + P+V+ Y  +++G CK G +   +  F +M   G+ PD F Y + I        
Sbjct: 440 --NRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIV------- 490

Query: 247 WEDAKGNTSAALELHEE---------------FVNGNGELGVI----------------- 274
            E   G+T+ A +L EE               FVNG  +LG +                 
Sbjct: 491 GELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVP 550

Query: 275 ----------CH----------------------PDVLSYCSIINSLCKDVLVDKAKELF 302
                      H                      P V++Y  +I++   +  +D A   F
Sbjct: 551 DHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYF 610

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
           L+M+ +G++P+V+ Y+ LI+G+C + ++D A K F+ ++ +G  P+  +Y  LIN    +
Sbjct: 611 LEMQEKGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTILINENCNM 670

Query: 363 EKVEEALSLYGEMISMGVRPDNSC 386
            K +EAL LY +M+   +RPD SC
Sbjct: 671 GKWQEALRLYAQMLGKRIRPD-SC 693



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 114/447 (25%), Positives = 192/447 (42%), Gaps = 57/447 (12%)

Query: 103 YVNFICL--SERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKV----FSPD 156
           Y+N+ CL   E++     LPD  + N ++    K++   +  V    + R +      P 
Sbjct: 181 YLNYQCLLVFEKMMRNRFLPDVKNCNRIL----KILRDKNLLVKALEVYRMMGEYGIRPT 236

Query: 157 VVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVR 216
           V T   ++   C  G+   A  L  K     C     P+ + +  +I+GL K G + + +
Sbjct: 237 VTTYNTMLHSFCKGGEVQRALDLVPKMQERGC----YPSEVTFNVLINGLSKKGELQQAK 292

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            L  +M   G+    + YN LI  YC        KG    AL L EE V           
Sbjct: 293 GLIQEMAKAGLRVSPYTYNPLICGYC-------KKGLLVEALALWEEMVTRG------VS 339

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P V S+ +I+   CK+  +  A++   DM  + ++PD++ Y++LI G+C +G I +A  L
Sbjct: 340 PTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFIL 399

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---------NSC- 386
              +       +  +YNTLI+   ++  +E AL L  +MI+ G+ PD          +C 
Sbjct: 400 LDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACK 459

Query: 387 ---ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
              +L A E F  + +     D   +   + G  K      A++L +++   G  P+V+T
Sbjct: 460 LGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVIT 519

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELL 503
           Y V + GLC  G +E+A                  ELL KM +    PD +T +      
Sbjct: 520 YNVFVNGLCKLGNLEEAG-----------------ELLQKMIRDGHVPDHVTYTSFMHAH 562

Query: 504 NKDENCHECMNLLPSFLSRNQEESKLT 530
            ++ +  E   +    LSR Q  + +T
Sbjct: 563 MENGHLREGREIFYDMLSRGQTPTVVT 589



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 121/253 (47%), Gaps = 21/253 (8%)

Query: 116 IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
           +GL PD  +    +    K+   + AF     +L K F PDV+T    + GLC  G   E
Sbjct: 476 VGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEE 535

Query: 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
           A  L  K +    R   +P+ + Y S +    ++G + + R +F DM  RG  P    Y 
Sbjct: 536 AGELLQKMI----RDGHVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYT 591

Query: 236 SLIRVYCC--AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDV 293
            LI  +     ++W  A       LE+ E+        GV+  P+V++Y  +IN  CK  
Sbjct: 592 VLIHAHALNGRLDWAMA-----YFLEMQEK--------GVV--PNVITYNVLINGFCKVR 636

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353
            +D+A + F++M+ +GI P+   Y+ LI+  C MG+  +A +L+  +  +   PD+ ++ 
Sbjct: 637 KMDQACKFFIEMQEKGIFPNKYTYTILINENCNMGKWQEALRLYAQMLGKRIRPDSCTHG 696

Query: 354 TLINSYSKIEKVE 366
            L+    K  KV+
Sbjct: 697 ALLKKLDKDYKVQ 709


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 109/421 (25%), Positives = 187/421 (44%), Gaps = 45/421 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++DAL     M+H +       + ++L     K   V+     + +   GL  D V+   
Sbjct: 345 VSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTT 404

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N  C+   + +A   L  +L +    D VT   L+ G C +GK  EA  +    V   
Sbjct: 405 LINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMV--- 461

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            +  V PNV+ Y ++ DGLCK G V     L  +M  +G+  +A  YNSLI   C A  +
Sbjct: 462 -QRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKA-GY 519

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
            D    T A ++                 PDV +Y ++I++LCK   +D+A +L  +M  
Sbjct: 520 LDQAMRTMADMD------------AAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLD 567

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            GI P +V Y+ L++G+C+ GR++  +KL   +  +   P+ ++YN+L+  Y     ++ 
Sbjct: 568 NGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKS 627

Query: 368 ALSLYGEMISMGVRPDNS---------CILEAAELFRTLHN----TKFELDLTVFNCLVD 414
              +Y  M S  V P+ +         C   + +  +  HN      F L  + ++ L+ 
Sbjct: 628 TTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIR 687

Query: 415 GLCKSWRLRSAWELFKKLPRYG--PEPNVVTY-------------TVMICGLCIEGGIEK 459
            L K  +   A +LF  + + G   EP+V  +             T+ +C   +E  I K
Sbjct: 688 LLNKKKKFVEARKLFHDMRKEGFTAEPDVYNFYIDFNFNEDNLEATLALCDELVEASIVK 747

Query: 460 A 460
           +
Sbjct: 748 S 748



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 120/438 (27%), Positives = 186/438 (42%), Gaps = 81/438 (18%)

Query: 109 LSERLNTIGLLPD--FVSLNILMNCFCKMIGVSDAFVALGRILRKVFS-----PDVVTLG 161
           L E +     LPD    S NIL+   C    V DA        R++F      PDVVT G
Sbjct: 247 LDEAIELFQGLPDKNVCSYNILLKVLCGAGRVEDA--------RQLFDEMASPPDVVTYG 298

Query: 162 CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD 221
            LI G C  G+   A  L    VA      V PN   Y S++  LC  G V+    +  D
Sbjct: 299 ILIHGYCALGELENAVKLLDDMVA----RGVEPNATVYTSVVALLCDKGRVSDALTVVED 354

Query: 222 MKGRGIYPDAFVYNSLIRVYC------CAVNWEDAKGNTSAALE--LHEEFVNG---NGE 270
           M    +  D  VY +++  +C       A  W D       A +   +   +NG    GE
Sbjct: 355 MVHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGE 414

Query: 271 L-----------GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSS 319
           L                 D ++Y  +++  CK   + +A ++   M  RG+ P+VV Y++
Sbjct: 415 LKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTA 474

Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           L DG C  G +  A +L   + ++G   +  +YN+LIN   K   +++A+    +M + G
Sbjct: 475 LSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAG 534

Query: 380 VRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
           ++PD                      +  +  L+D LCKS  L  A +L +++   G +P
Sbjct: 535 LKPD----------------------VYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKP 572

Query: 440 NVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-----------------IRECLKAIELLH 482
            +VTY V++ G C+ G +E    LL  M EK                 I   +K+   ++
Sbjct: 573 TIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIY 632

Query: 483 K-MAKRYVKPDEITVSIL 499
           K M  R V+P+E T +IL
Sbjct: 633 KGMCSRNVEPNENTYNIL 650



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 105/404 (25%), Positives = 172/404 (42%), Gaps = 39/404 (9%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           EL +A+   + M+     P    + S++  L  K    + + + E +    ++ D     
Sbjct: 309 ELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYT 368

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            +++ FC    +  A      + RK  + D VT   LI GLC  G+  EA  +  + +A 
Sbjct: 369 TVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLAR 428

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             R +V  + + Y  ++DG CK G + +   +   M  RG+ P+   Y +L    C    
Sbjct: 429 --RLDV--DEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLC---- 480

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
               +G+  AA EL  E  N   EL      +  +Y S+IN LCK   +D+A     DM 
Sbjct: 481 ---KQGDVQAANELLHEMSNKGLEL------NACTYNSLINGLCKAGYLDQAMRTMADMD 531

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           + G+ PDV  Y++LID  C  G +D A  L   +   G  P   +YN L+N +    +VE
Sbjct: 532 AAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVE 591

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
               L   M+   + P                      + T +N L+   C    ++S  
Sbjct: 592 GGKKLLEWMLEKNIHP----------------------NATTYNSLMKQYCIGNNMKSTT 629

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           E++K +     EPN  TY ++I G C    +++A     +M EK
Sbjct: 630 EIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEK 673



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 147/344 (42%), Gaps = 56/344 (16%)

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           NV  Y  ++  LC  G V   R LF +M      PD   Y  LI  YC       A G  
Sbjct: 261 NVCSYNILLKVLCGAGRVEDARQLFDEMASP---PDVVTYGILIHGYC-------ALGEL 310

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
             A++L ++ V    E      P+   Y S++  LC    V  A  +  DM    +I D 
Sbjct: 311 ENAVKLLDDMVARGVE------PNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDE 364

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
            VY++++ G+C  G +  AR+ F  ++ +G   D  +Y TLIN   +  +++EA  +  E
Sbjct: 365 AVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQE 424

Query: 375 MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
           M++                       + ++D   +  LVDG CK  ++  A+++   + +
Sbjct: 425 MLA----------------------RRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQ 462

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK---IRECL---------------K 476
            G  PNVVTYT +  GLC +G ++ A +LL +M  K   +  C                +
Sbjct: 463 RGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQ 522

Query: 477 AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
           A+  +  M    +KPD  T + L + L K        +LL   L
Sbjct: 523 AMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEML 566


>gi|240254191|ref|NP_174467.4| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|357528959|sp|Q9C6S6.2|PPR67_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g31840
 gi|332193282|gb|AEE31403.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 840

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 121/463 (26%), Positives = 212/463 (45%), Gaps = 51/463 (11%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK--MIGVSD 140
           P P + +F +L+     +        L + +   G+ PD ++ + L++ + K  M+G+  
Sbjct: 282 PAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGH 341

Query: 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200
              +  + L K    DVV     I      G    AS ++ + +   C+  + PNV+ Y 
Sbjct: 342 KLFS--QALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRML---CQ-GISPNVVTYT 395

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL 260
            +I GLC+DG + +   ++  +  RG+ P    Y+SLI  +C         GN  +   L
Sbjct: 396 ILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKC-------GNLRSGFAL 448

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
           +E+ +    ++G    PDV+ Y  +++ L K  L+  A    + M  + I  +VVV++SL
Sbjct: 449 YEDMI----KMGY--PPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSL 502

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           IDG+C + R D+A K+F  +   G  PD +++ T++       ++EEAL L+  M  MG+
Sbjct: 503 IDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGL 562

Query: 381 RPD--NSCILEAA-----------ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
            PD    C L  A           +LF  +   K   D+ V N ++  L K  R+  A +
Sbjct: 563 EPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASK 622

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKR 487
            F  L     EP++VTY  MICG C    +++A        E+I E LK           
Sbjct: 623 FFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEA--------ERIFELLKVTPF------- 667

Query: 488 YVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
              P+ +T++IL  +L K+ +    + +      +  + + +T
Sbjct: 668 --GPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVT 708



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 110/451 (24%), Positives = 199/451 (44%), Gaps = 71/451 (15%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           +R+   G+ P+ V+  IL+   C+   + +AF   G+IL++   P +VT   LI G C  
Sbjct: 380 KRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKC 439

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G       L+   +    +    P+V+ Y  ++DGL K G +       + M G+ I  +
Sbjct: 440 GNLRSGFALYEDMI----KMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLN 495

Query: 231 AFVYNSLIRVYCCAVNWEDA----------------------------KGNTSAALELHE 262
             V+NSLI  +C    +++A                            +G    AL L  
Sbjct: 496 VVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFF 555

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
                  ++G+   PD L+YC++I++ CK +      +LF  M+   I  D+ V + +I 
Sbjct: 556 RMF----KMGL--EPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIH 609

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
                 RI+DA K F ++      PD  +YNT+I  Y  + +++EA  ++ E++ +    
Sbjct: 610 LLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIF-ELLKVTPFG 668

Query: 383 DNSCILE--------------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
            N+  L               A  +F  +     + +   + CL+D   KS  +  +++L
Sbjct: 669 PNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKL 728

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD---------LLPDMEE---------K 470
           F+++   G  P++V+Y+++I GLC  G +++A +         LLPD+           K
Sbjct: 729 FEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCK 788

Query: 471 IRECLKAIELLHKMAKRYVKPDEITVSILEE 501
           +   ++A  L   M +  VKPD++    L E
Sbjct: 789 VGRLVEAALLYEHMLRNGVKPDDLLQRALSE 819



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 141/318 (44%), Gaps = 17/318 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
             ++AL  F  M      P + +F +++     +      + L  R+  +GL PD ++  
Sbjct: 511 RFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYC 570

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ FCK +  +        + R   S D+     +I  L    +  +AS  F   +  
Sbjct: 571 TLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLI-- 628

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                + P+++ Y ++I G C    +++   +F  +K     P+      LI V C   +
Sbjct: 629 --EGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNND 686

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            + A    S   E   +             P+ ++Y  +++   K V ++ + +LF +M+
Sbjct: 687 MDGAIRMFSIMAEKGSK-------------PNAVTYGCLMDWFSKSVDIEGSFKLFEEMQ 733

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            +GI P +V YS +IDG C  GR+D+A  +F        +PD  +Y  LI  Y K+ ++ 
Sbjct: 734 EKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRLV 793

Query: 367 EALSLYGEMISMGVRPDN 384
           EA  LY  M+  GV+PD+
Sbjct: 794 EAALLYEHMLRNGVKPDD 811



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 94/218 (43%), Gaps = 31/218 (14%)

Query: 281 SYCSIINSLCKDVLVDKAKELFLDM--------------KSRGIIPDVVVYSSLIDGYCL 326
           S+ +I + L ++ + D A ++F +M              + R +  DV  +  L++  C 
Sbjct: 101 SFYTIAHVLIRNGMFDVADKVFDEMITNRGKDFNVLGSIRDRSLDADVCKF--LMECCCR 158

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC 386
            G +D A ++FV     G +    S   ++NS    ++V+     + ++   G+ P    
Sbjct: 159 YGMVDKALEIFVYSTQLGVVIPQDSVYRMLNSLIGSDRVDLIADHFDKLCRGGIEPSGVS 218

Query: 387 --------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
                         + +A +  R +    F + +   N ++ GL    ++  A  L   +
Sbjct: 219 AHGFVLDALFCKGEVTKALDFHRLVMERGFRVGIVSCNKVLKGLSVD-QIEVASRLLSLV 277

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
              GP PNVVT+  +I G C  G +++A+DL   ME++
Sbjct: 278 LDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQR 315


>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 772

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 179/383 (46%), Gaps = 39/383 (10%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + ++N+LL A  G+K       + + +    ++    + +IL+  +     + +A   
Sbjct: 250 PNVFTYNTLLNAYVGRKDRKGVDEILKLMEKEQVVFSVATYSILIQWYSSSGDIEEAEKI 309

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
              +  K    DV     +I      G    A  LF +    D    ++PN   Y ++I 
Sbjct: 310 FEEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQRD----IVPNAHTYGALIG 365

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           G+CK G +    +L L+M+ +G+  +  ++N+ +  YC        +G    AL L +  
Sbjct: 366 GVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYC-------RRGKMDEALRL-QAI 417

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           +   G      + DV +Y  + N LCK    D+AK +   M  +G+ P+VV ++  I+ Y
Sbjct: 418 MEKKG-----INADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIY 472

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           C  G + +A +LF  +E +G +P+  +YNTLI++Y K EKV++A  +  EMI+ G+ PD 
Sbjct: 473 CKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPD- 531

Query: 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
                                L  ++ L+ G C   R+  A +LF ++   G   NV TY
Sbjct: 532 ---------------------LYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVATY 570

Query: 445 TVMICGLCIEGGIEKAYDLLPDM 467
           T MI GL  EG  ++A+ L  +M
Sbjct: 571 TSMISGLSKEGRADEAFKLYDEM 593



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 175/361 (48%), Gaps = 31/361 (8%)

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRK-VFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           SL ++++  C+   V  A   +  ++ K +  P+V T   L+     +    +  G+  +
Sbjct: 218 SLTLVIDVLCRRGEVEKAKELMDEMVGKGIVKPNVFTYNTLLNAYVGR---KDRKGV-DE 273

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
            +    +  V+ +V  Y+ +I      G + +   +F +M+ + I  D +VY+S+I    
Sbjct: 274 ILKLMEKEQVVFSVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMI---- 329

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
              +W    GN   A  L +E    +        P+  +Y ++I  +CK   ++ A+ L 
Sbjct: 330 ---SWSRRLGNMKRAFALFDEMSQRD------IVPNAHTYGALIGGVCKAGQMEAAEILL 380

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
           L+M+S+G+  ++V++++ +DGYC  G++D+A +L   +E +G   D  +YN L N   K+
Sbjct: 381 LEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKL 440

Query: 363 EKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVF 409
            + +EA  +   M+  GV+P+                + EA  LFR +       ++  +
Sbjct: 441 HRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITY 500

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           N L+D  CK  +++ A ++  ++   G  P++ TY+ +I G CI G +++A  L  +M  
Sbjct: 501 NTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRL 560

Query: 470 K 470
           K
Sbjct: 561 K 561



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 154/298 (51%), Gaps = 23/298 (7%)

Query: 87  MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALG 146
           M S++  LG +  K+ +  F  +S+R     ++P+  +   L+   CK   +  A + L 
Sbjct: 328 MISWSRRLGNM--KRAFALFDEMSQR----DIVPNAHTYGALIGGVCKAGQMEAAEILLL 381

Query: 147 RILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGL 206
            +  K    ++V     + G C +GK  EA     +  A   +  +  +V  Y  + +GL
Sbjct: 382 EMQSKGVDLNLVIFNTTMDGYCRRGKMDEA----LRLQAIMEKKGINADVFTYNILANGL 437

Query: 207 CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266
           CK    ++ + +   M  +G+ P+   +   I +YC        +GN + A  L  + + 
Sbjct: 438 CKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYC-------KEGNLAEAERLFRD-ME 489

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
             GE+     P++++Y ++I++ CK   V +A ++  +M ++G++PD+  YSSLI G C+
Sbjct: 490 KKGEV-----PNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECI 544

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           +GR+D+A KLF  +  +G   + ++Y ++I+  SK  + +EA  LY EM+ +G+ PD+
Sbjct: 545 VGRVDEALKLFNEMRLKGITRNVATYTSMISGLSKEGRADEAFKLYDEMMKIGLIPDD 602



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 141/296 (47%), Gaps = 21/296 (7%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIGLLPDFVSL 125
           +  A   F+ M      P   ++ +L+G +  AG+      + L   + + G+  + V  
Sbjct: 338 MKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLE--MQSKGVDLNLVIF 395

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           N  M+ +C+   + +A      + +K  + DV T   L  GLC   ++ EA  +    V 
Sbjct: 396 NTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMV- 454

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
                 V PNV+ +   I+  CK+G + +   LF DM+ +G  P+   YN+LI  YC   
Sbjct: 455 ---EKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYC--- 508

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
                K     A ++  E +N     G++  PD+ +Y S+I+  C    VD+A +LF +M
Sbjct: 509 ----KKEKVKQAHKIKSEMINK----GLL--PDLYTYSSLIHGECIVGRVDEALKLFNEM 558

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           + +GI  +V  Y+S+I G    GR D+A KL+  +   G IPD   + +L+ S+ K
Sbjct: 559 RLKGITRNVATYTSMISGLSKEGRADEAFKLYDEMMKIGLIPDDRVFTSLVGSFHK 614



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 128/275 (46%), Gaps = 42/275 (15%)

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGII-PDVVVYSSLIDGYCLMGR-----IDD 332
           V S   +I+ LC+   V+KAKEL  +M  +GI+ P+V  Y++L++ Y  +GR     +D+
Sbjct: 216 VQSLTLVIDVLCRRGEVEKAKELMDEMVGKGIVKPNVFTYNTLLNAY--VGRKDRKGVDE 273

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM----ISMGVRPDNSCI- 387
             KL   +E E  +   ++Y+ LI  YS    +EEA  ++ EM    I M V   +S I 
Sbjct: 274 ILKL---MEKEQVVFSVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMIS 330

Query: 388 --------LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
                     A  LF  +       +   +  L+ G+CK+ ++ +A  L  ++   G + 
Sbjct: 331 WSRRLGNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDL 390

Query: 440 NVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELL 481
           N+V +   + G C  G +++A  L   ME+                  K+    +A  +L
Sbjct: 391 NLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCIL 450

Query: 482 HKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           + M ++ VKP+ +T ++  E+  K+ N  E   L 
Sbjct: 451 NSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLF 485


>gi|357437447|ref|XP_003588999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478047|gb|AES59250.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 458

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 155/305 (50%), Gaps = 42/305 (13%)

Query: 148 ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207
           ++ + F  D  + G LI GLC  G  T A+    +  AF+      P+V+ Y ++ID +C
Sbjct: 131 VVARGFDVDHYSYGTLINGLCKVGGDTRAALQLLR-QAFE------PDVVMYTTVIDNMC 183

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
           KD FVN    L+ +M   GI P+   Y +LI  +C     E+A G       L ++ ++ 
Sbjct: 184 KDTFVNDAFDLYYEMVASGISPNVVTYTALIDGFCVVGKLEEALG-------LFKKMISE 236

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
           N       +P+V ++  ++++ CK+  +++AK +   M  + +  DVV YSSL++GYCL+
Sbjct: 237 N------INPNVYTFNGLVDAFCKEGKIEEAKNVLNTMMEKDLKSDVVAYSSLMNGYCLV 290

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
             +  A+ +F ++       D  SYN +IN + K++ V+EA+ L+ EM    + PD    
Sbjct: 291 NEVFKAQSIFKTMAERELSYDVRSYNIMINEFCKMKMVDEAIKLFEEMPLKQIFPD---- 346

Query: 388 LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
                             +  ++ L+DGLCKS RL  A EL  ++   G  PN++TY  +
Sbjct: 347 ------------------VVTYHTLIDGLCKSGRLSYAMELVDEMDDRGEPPNIITYCPI 388

Query: 448 ICGLC 452
           +  LC
Sbjct: 389 VDVLC 393



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 161/308 (52%), Gaps = 36/308 (11%)

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK---GRGIYPDAFVYN 235
           L   FV   C+  +I   +   + I G+C+ G +   R L    K    RG   D + Y 
Sbjct: 89  LLHSFVKIICQYYIIAPPL--TTPIKGICQTGDIQ--RALNFHYKVVVARGFDVDHYSYG 144

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           +LI   C         G+T AAL+L  +             PDV+ Y ++I+++CKD  V
Sbjct: 145 TLINGLC------KVGGDTRAALQLLRQAF----------EPDVVMYTTVIDNMCKDTFV 188

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           + A +L+ +M + GI P+VV Y++LIDG+C++G++++A  LF  + SE   P+  ++N L
Sbjct: 189 NDAFDLYYEMVASGISPNVVTYTALIDGFCVVGKLEEALGLFKKMISENINPNVYTFNGL 248

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPD---------NSC----ILEAAELFRTLHNTKF 402
           ++++ K  K+EEA ++   M+   ++ D           C    + +A  +F+T+   + 
Sbjct: 249 VDAFCKEGKIEEAKNVLNTMMEKDLKSDVVAYSSLMNGYCLVNEVFKAQSIFKTMAEREL 308

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
             D+  +N +++  CK   +  A +LF+++P     P+VVTY  +I GLC  G +  A +
Sbjct: 309 SYDVRSYNIMINEFCKMKMVDEAIKLFEEMPLKQIFPDVVTYHTLIDGLCKSGRLSYAME 368

Query: 463 LLPDMEEK 470
           L+ +M+++
Sbjct: 369 LVDEMDDR 376



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 118/240 (49%), Gaps = 21/240 (8%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V    +++  CK   V+DAF     ++    SP+VVT   LI G C+ GK  EA GL
Sbjct: 170 PDVVMYTTVIDNMCKDTFVNDAFDLYYEMVASGISPNVVTYTALIDGFCVVGKLEEALGL 229

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F K ++     N+ PNV  +  ++D  CK+G + + + +   M  + +  D   Y+SL+ 
Sbjct: 230 FKKMIS----ENINPNVYTFNGLVDAFCKEGKIEEAKNVLNTMMEKDLKSDVVAYSSLMN 285

Query: 240 VYCCAVNWEDAKG--NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
            YC       A+    T A  EL                 DV SY  +IN  CK  +VD+
Sbjct: 286 GYCLVNEVFKAQSIFKTMAERELSY---------------DVRSYNIMINEFCKMKMVDE 330

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A +LF +M  + I PDVV Y +LIDG C  GR+  A +L   ++  G  P+  +Y  +++
Sbjct: 331 AIKLFEEMPLKQIFPDVVTYHTLIDGLCKSGRLSYAMELVDEMDDRGEPPNIITYCPIVD 390



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 127/267 (47%), Gaps = 20/267 (7%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G   D  S   L+N  CK+ G  D   AL ++LR+ F PDVV    +I  +C      +A
Sbjct: 135 GFDVDHYSYGTLINGLCKVGG--DTRAAL-QLLRQAFEPDVVMYTTVIDNMCKDTFVNDA 191

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L+ + VA      + PNV+ Y ++IDG C  G + +   LF  M    I P+ + +N 
Sbjct: 192 FDLYYEMVA----SGISPNVVTYTALIDGFCVVGKLEEALGLFKKMISENINPNVYTFNG 247

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           L+  +C     E+AK   +  +E                  DV++Y S++N  C    V 
Sbjct: 248 LVDAFCKEGKIEEAKNVLNTMMEKD-------------LKSDVVAYSSLMNGYCLVNEVF 294

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           KA+ +F  M  R +  DV  Y+ +I+ +C M  +D+A KLF  +  +   PD  +Y+TLI
Sbjct: 295 KAQSIFKTMAERELSYDVRSYNIMINEFCKMKMVDEAIKLFEEMPLKQIFPDVVTYHTLI 354

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD 383
           +   K  ++  A+ L  EM   G  P+
Sbjct: 355 DGLCKSGRLSYAMELVDEMDDRGEPPN 381



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 17/209 (8%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ P+ V+   L++ FC +  + +A     +++ +  +P+V T   L+   C +GK  EA
Sbjct: 202 GISPNVVTYTALIDGFCVVGKLEEALGLFKKMISENINPNVYTFNGLVDAFCKEGKIEEA 261

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             +    +  D +     +V+ Y+S+++G C    V K + +F  M  R +  D   YN 
Sbjct: 262 KNVLNTMMEKDLK----SDVVAYSSLMNGYCLVNEVFKAQSIFKTMAERELSYDVRSYNI 317

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           +I  +C              A++L EE       L  I  PDV++Y ++I+ LCK   + 
Sbjct: 318 MINEFC-------KMKMVDEAIKLFEEM-----PLKQI-FPDVVTYHTLIDGLCKSGRLS 364

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
            A EL  +M  RG  P+++ Y  ++D  C
Sbjct: 365 YAMELVDEMDDRGEPPNIITYCPIVDVLC 393



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 107/229 (46%), Gaps = 25/229 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +NDA   +  M+    +P + ++ +L+            + L +++ +  + P+  + N 
Sbjct: 188 VNDAFDLYYEMVASGISPNVVTYTALIDGFCVVGKLEEALGLFKKMISENINPNVYTFNG 247

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF---- 183
           L++ FCK   + +A   L  ++ K    DVV    L+ G C+  +  +A  +F       
Sbjct: 248 LVDAFCKEGKIEEAKNVLNTMMEKDLKSDVVAYSSLMNGYCLVNEVFKAQSIFKTMAERE 307

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
           +++D R         Y  +I+  CK   V++   LF +M  + I+PD   Y++LI   C 
Sbjct: 308 LSYDVR--------SYNIMINEFCKMKMVDEAIKLFEEMPLKQIFPDVVTYHTLIDGLC- 358

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
                   G  S A+EL +E ++  GE      P++++YC I++ LCK+
Sbjct: 359 ------KSGRLSYAMELVDE-MDDRGE-----PPNIITYCPIVDVLCKN 395


>gi|326514834|dbj|BAJ99778.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 609

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 177/367 (48%), Gaps = 30/367 (8%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           E +   G+ P+ V+    +   C+   V DAF     ++R    PDVVTL  L+ GLC  
Sbjct: 260 ETMKGDGVEPNVVTYTTFIAECCRTNAVDDAFSLYEEMVRMGVLPDVVTLSALVDGLCRA 319

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G+F+EA  LF +           PN + Y ++ID L K    ++   L  ++  RG+  D
Sbjct: 320 GRFSEAYALFREMEKI----GAAPNHVTYCTLIDSLWKARRGSESHGLLGEVVSRGVVMD 375

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
             +Y SL+       +W   +G      ++    ++ N        P+ ++Y  +I++LC
Sbjct: 376 LVMYTSLM-------DWLGKQGKIDEVKDMFHCALSDNHT------PNGVTYTVLIDALC 422

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           +   VD A+++ L+M+ + + P+VV +SS+I+G    G +  A      ++  G  P+  
Sbjct: 423 RAGNVDGAEQMLLEMEDKSVHPNVVTFSSIINGLTKQGLLGKAADYMRKMKERGIDPNVV 482

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTL 397
           +Y T+++ + K ++ E AL LY EM+  GV  +             N  + EA  LFR +
Sbjct: 483 TYGTVMDGFFKCQEQESALDLYHEMLCEGVEVNKFIVDLLVNGLRKNGKMEEAEALFRDM 542

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
           +     LD   +  L+DGL K   + +A+++ ++L      P+ V Y V +  LC+ G  
Sbjct: 543 NKRGMLLDHVNYTTLIDGLFKMGNMPAAFKVGQELTERNLSPDAVVYNVFVNCLCMLGKS 602

Query: 458 EKAYDLL 464
           ++A  +L
Sbjct: 603 KEAESIL 609



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 124/476 (26%), Positives = 211/476 (44%), Gaps = 62/476 (13%)

Query: 79  IHMQPTPFMP-SFNSLL---GALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC- 133
           +  +P P  P S NS+L    AL   +  +  +  SE  +T       VS N++++    
Sbjct: 88  VRFRPVPGDPLSLNSILLSHCALRSLRPALALLRASESADT-------VSYNVVISGLTE 140

Query: 134 --KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
             +  G++ A +A   + ++    D VT+   +  LC  G+   A+ L    V    R  
Sbjct: 141 QGRHGGLAPALLA--EMCKRGVPFDAVTVNTALVALCRDGQVEGAAALAEMMV--RGREI 196

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
              +V+ + +++DG CK G +         M+ +G+  D   YN+L+   C A   + A+
Sbjct: 197 HRLDVVGWNALLDGYCKSGDMEAALTAAQRMRTQGVGVDVVGYNTLVAGLCRAGEADAAR 256

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
           G          E + G+G       P+V++Y + I   C+   VD A  L+ +M   G++
Sbjct: 257 GML--------ETMKGDG-----VEPNVVTYTTFIAECCRTNAVDDAFSLYEEMVRMGVL 303

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           PDVV  S+L+DG C  GR  +A  LF  +E  G  P+  +Y TLI+S  K  +  E+  L
Sbjct: 304 PDVVTLSALVDGLCRAGRFSEAYALFREMEKIGAAPNHVTYCTLIDSLWKARRGSESHGL 363

Query: 372 YGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
            GE++S GV  D                I E  ++F    +     +   +  L+D LC+
Sbjct: 364 LGEVVSRGVVMDLVMYTSLMDWLGKQGKIDEVKDMFHCALSDNHTPNGVTYTVLIDALCR 423

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE--------- 469
           +  +  A ++  ++      PNVVT++ +I GL  +G + KA D +  M+E         
Sbjct: 424 AGNVDGAEQMLLEMEDKSVHPNVVTFSSIINGLTKQGLLGKAADYMRKMKERGIDPNVVT 483

Query: 470 ---------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                    K +E   A++L H+M    V+ ++  V +L   L K+    E   L 
Sbjct: 484 YGTVMDGFFKCQEQESALDLYHEMLCEGVEVNKFIVDLLVNGLRKNGKMEEAEALF 539


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/395 (25%), Positives = 189/395 (47%), Gaps = 33/395 (8%)

Query: 85  PFMPSFNSLLGALAGK-KYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           P +P +N+L+  +  + +  V    L E ++  G+ P+ VS + ++N  C    V  AF 
Sbjct: 242 PSVPVYNALIDGMCKEGRIEVAIKLLGEMMDN-GVDPNVVSYSCIINSLCVSGNVELAFA 300

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
              ++  +    ++ T   LI+G  M+GK  EA  L+   +   C PNV+     Y ++I
Sbjct: 301 LFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVA----YNTLI 356

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
            GLC +G + +   +   M+  G  P+   Y+ LI  +          G+   A E    
Sbjct: 357 HGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFA-------KSGDLVGASETWNR 409

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
            ++        C P+V++Y  +++ LCK+ + D+A  L   M   G  P+ + +++ I G
Sbjct: 410 MISHG------CRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKG 463

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            C  GR++ A KL   ++  GC+P+ ++YN L+++  ++ K EEA  L+ E+ +  ++P+
Sbjct: 464 LCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPN 523

Query: 384 ----NSCIL---------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
               N+ +          EA +LF          D   +N ++   CK  +++ A +L +
Sbjct: 524 LVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVE 583

Query: 431 KLPRYGP-EPNVVTYTVMICGLCIEGGIEKAYDLL 464
           ++       P+++TYT +I G C    IE+A   L
Sbjct: 584 RVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFL 618



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 114/465 (24%), Positives = 198/465 (42%), Gaps = 64/465 (13%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P +  +N LL AL  +  +     L   +   GL+P+  + NIL+   CK   V  A   
Sbjct: 142 PTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKL 201

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
              +  K   PD VT   ++  LC  GK  +A  L  +F          P+V  Y ++ID
Sbjct: 202 FVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFK---------PSVPVYNALID 252

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE- 263
           G+CK+G +     L  +M   G+ P+   Y+ +I   C +       GN   A  L  + 
Sbjct: 253 GMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVS-------GNVELAFALFAQM 305

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
           F+ G       C  ++ ++  +I        + +A +L+  M   G  P+VV Y++LI G
Sbjct: 306 FLRG-------CDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHG 358

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            C  G +++A ++   ++  GC+P+ ++Y+ LI+ ++K   +  A   +  MIS G RP 
Sbjct: 359 LCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRP- 417

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                                ++  + C+VD LCK+     A  L +K+   G  PN +T
Sbjct: 418 ---------------------NVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTIT 456

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMA 485
           +   I GLC  G +E A  LL  M+                   ++ +  +A  L  ++ 
Sbjct: 457 FNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIE 516

Query: 486 KRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
            R ++P+ +T + +    ++     E + L    L R      +T
Sbjct: 517 ARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSIT 561



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 164/358 (45%), Gaps = 52/358 (14%)

Query: 162 CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD 221
           C+I G    G   +A  +F +   F C+    P V  Y  ++D L  +     +  L+ +
Sbjct: 114 CIINGYKRVGSAEQALKMFYRIGEFGCK----PTVRIYNHLLDALLSENKFQMINPLYTN 169

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
           MK  G+ P+ F YN L++  C             AA +L  E  N        C PD ++
Sbjct: 170 MKKDGLIPNVFTYNILLKALC-------KNDRVDAAHKLFVEMSNKG------CPPDAVT 216

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y ++++SLCK   +D A+EL    K     P V VY++LIDG C  GRI+ A KL   + 
Sbjct: 217 YTTMVSSLCKAGKIDDARELAGRFK-----PSVPVYNALIDGMCKEGRIEVAIKLLGEMM 271

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------NSCIL----- 388
             G  P+  SY+ +INS      VE A +L+ +M   G   +          C +     
Sbjct: 272 DNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLY 331

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
           EA +L++ +     E ++  +N L+ GLC +  L  A ++  ++ R G  PNV TY+++I
Sbjct: 332 EALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILI 391

Query: 449 CGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
                  G  K+ DL           + A E  ++M     +P+ +T + + ++L K+
Sbjct: 392 ------DGFAKSGDL-----------VGASETWNRMISHGCRPNVVTYTCMVDVLCKN 432



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 129/269 (47%), Gaps = 40/269 (14%)

Query: 199 YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL 258
           Y  +I+ L ++  ++ V+ +   MK  GI       N    ++ C +N     G+   AL
Sbjct: 77  YRVMIERLGRECEMDMVQYILQQMKMDGI-------NCCEDLFICIINGYKRVGSAEQAL 129

Query: 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS 318
           ++        GE G  C P V  Y  ++++L  +        L+ +MK  G+IP+V  Y+
Sbjct: 130 KMFYRI----GEFG--CKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYN 183

Query: 319 SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
            L+   C   R+D A KLFV + ++GC PD  +Y T+++S  K  K+++A  L G     
Sbjct: 184 ILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAG----- 238

Query: 379 GVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
                                 +F+  + V+N L+DG+CK  R+  A +L  ++   G +
Sbjct: 239 ----------------------RFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVD 276

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           PNVV+Y+ +I  LC+ G +E A+ L   M
Sbjct: 277 PNVVSYSCIINSLCVSGNVELAFALFAQM 305



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 150/321 (46%), Gaps = 24/321 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L +AL  +  MI     P + ++N+L+  L         + + +++   G LP+  + +
Sbjct: 329 KLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYS 388

Query: 127 ILMNCFCK---MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           IL++ F K   ++G S+ +    R++     P+VVT  C++  LC    F +A+ L  K 
Sbjct: 389 ILIDGFAKSGDLVGASETW---NRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKM 445

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
               C PN I     + + I GLC +G V     L   M+G G  P+   YN L+     
Sbjct: 446 TLEGCTPNTIT----FNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFR 501

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
              +E+A G       L +E    N        P++++Y +++    +  ++ +A +LF 
Sbjct: 502 MNKYEEAFG-------LFQEIEARN------LQPNLVTYNTVLYGFSRAGMMGEALQLFG 548

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES-EGCIPDTSSYNTLINSYSKI 362
               RG  PD + Y+++I  YC  G++  A +L   + S +   PD  +Y +LI      
Sbjct: 549 KALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNW 608

Query: 363 EKVEEALSLYGEMISMGVRPD 383
             +EEA++   + I+ G+ P+
Sbjct: 609 MNIEEAMAFLDKAINQGICPN 629


>gi|414590917|tpg|DAA41488.1| TPA: hypothetical protein ZEAMMB73_494908 [Zea mays]
          Length = 601

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 125/471 (26%), Positives = 202/471 (42%), Gaps = 53/471 (11%)

Query: 67  ELNDALCFFNYM---IHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV 123
           +L  AL     M    H    P   S+  ++  L   +     + L   +   G+  D V
Sbjct: 92  DLRQALSLLADMSREAHPAARPNAVSYTMVMRGLCASRRTDEAVALLRSMQASGVRADVV 151

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           +   L+   C    +  A   LG +      P+V+   CL+RG C  G++ + S +F + 
Sbjct: 152 TYGTLIRGLCDAAELDGALELLGEMCGSGVHPNVIVYSCLLRGYCRSGRWQDVSKVFEEM 211

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
                R  V P+VI +   ID LCK G + K   +   M  RG+ P+   YN LI   C 
Sbjct: 212 ----SRLGVEPDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQRGLEPNVVTYNVLINCLC- 266

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                  +G+   AL L  E      + GV   PDV++Y ++I  L   + +D A  L  
Sbjct: 267 ------KEGSVREALALRNEM----DDKGV--APDVVTYNTLIAGLSGVLEMDGAMGLLE 314

Query: 304 DMKSRGII--PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           +M     +  PDVV ++S+I G C +GR+  A  +   +   GC+ +  +YN LI  + +
Sbjct: 315 EMIQGDTLVEPDVVTFNSVIHGLCKIGRMRQAISVREMMAERGCMCNLVTYNYLIGGFLR 374

Query: 362 IEKVEEALSLYGEMISMGVRPDNSCI------------LEAAELF-RTLHNTKFELDLTV 408
           + KV  A++L  E+IS G+ PD+               ++ AE+F RT+       +L  
Sbjct: 375 VHKVNMAMNLMSELISSGLEPDSFTYSILINGFSKLWEVDRAEMFLRTMTQRGIRAELFH 434

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +  L+  LC+   +  A  LF ++       + V Y+ M+ G C  G I+ A  LL DM 
Sbjct: 435 YIPLLAALCQLGMMEQAMVLFNEMD-MNCGLDAVAYSTMMYGACKSGDIKAAKQLLQDML 493

Query: 469 EKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519
           ++                  + PD +T SIL  +  K  +  E   +L   
Sbjct: 494 DE-----------------GLAPDAVTYSILINMFAKLGDLEEAERVLKQM 527



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/359 (27%), Positives = 154/359 (42%), Gaps = 45/359 (12%)

Query: 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV 215
           D V+   ++  LC +G     +      ++ +  P   PN + Y  ++ GLC     ++ 
Sbjct: 75  DAVSYNIVLAALCRRGGDLRQALSLLADMSREAHPAARPNAVSYTMVMRGLCASRRTDEA 134

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
             L   M+  G+  D   Y +LIR  C A   +        ALEL  E   G+G      
Sbjct: 135 VALLRSMQASGVRADVVTYGTLIRGLCDAAELD-------GALELLGEMC-GSG-----V 181

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
           HP+V+ Y  ++   C+        ++F +M   G+ PDV++++  ID  C  GRI  A K
Sbjct: 182 HPNVIVYSCLLRGYCRSGRWQDVSKVFEEMSRLGVEPDVIMFTGFIDDLCKKGRIGKAVK 241

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN----------S 385
           +   +   G  P+  +YN LIN   K   V EAL+L  EM   GV PD           S
Sbjct: 242 VKDIMVQRGLEPNVVTYNVLINCLCKEGSVREALALRNEMDDKGVAPDVVTYNTLIAGLS 301

Query: 386 CILEAAELFRTLH-----NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
            +LE       L      +T  E D+  FN ++ GLCK  R+R A  + + +   G   N
Sbjct: 302 GVLEMDGAMGLLEEMIQGDTLVEPDVVTFNSVIHGLCKIGRMRQAISVREMMAERGCMCN 361

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           +VTY  +I G                   ++ +   A+ L+ ++    ++PD  T SIL
Sbjct: 362 LVTYNYLIGGFL-----------------RVHKVNMAMNLMSELISSGLEPDSFTYSIL 403



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 104/400 (26%), Positives = 167/400 (41%), Gaps = 46/400 (11%)

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           F  M  +   P +  F   +  L  K      + + + +   GL P+ V+ N+L+NC CK
Sbjct: 208 FEEMSRLGVEPDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQRGLEPNVVTYNVLINCLCK 267

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
              V +A      +  K  +PDVVT   LI GL    +   A GL  + +  D    V P
Sbjct: 268 EGSVREALALRNEMDDKGVAPDVVTYNTLIAGLSGVLEMDGAMGLLEEMIQGDTL--VEP 325

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI----RVYCCAVNWEDA 250
           +V+ + S+I GLCK G + +   +   M  RG   +   YN LI    RV+         
Sbjct: 326 DVVTFNSVIHGLCKIGRMRQAISVREMMAERGCMCNLVTYNYLIGGFLRVH--------- 376

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
               + A+ L  E ++   E      PD  +Y  +IN   K   VD+A+     M  RGI
Sbjct: 377 --KVNMAMNLMSELISSGLE------PDSFTYSILINGFSKLWEVDRAEMFLRTMTQRGI 428

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
             ++  Y  L+   C +G ++ A  LF  ++   C  D  +Y+T++    K   ++ A  
Sbjct: 429 RAELFHYIPLLAALCQLGMMEQAMVLFNEMDMN-CGLDAVAYSTMMYGACKSGDIKAAKQ 487

Query: 371 LYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
           L  +M+  G+ PD                         ++ L++   K   L  A  + K
Sbjct: 488 LLQDMLDEGLAPDA----------------------VTYSILINMFAKLGDLEEAERVLK 525

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           ++   G  P+V  +  +I G   EG I K  DL+ +M  K
Sbjct: 526 QMAASGFVPDVAVFDSLIKGYSAEGQINKILDLIHEMRAK 565


>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 804

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 116/423 (27%), Positives = 190/423 (44%), Gaps = 62/423 (14%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKK----YYVNFICLSERLNTIG 117
           KSG+ +  +AL  F+ M   +  P   ++  ++  L   +     Y  FI + +     G
Sbjct: 208 KSGKTQ--NALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVAYRLFIAMKDH----G 261

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
            +PD V+ N L++ FCK+  V +A   L    +  +  D     CLI GL    +F +A 
Sbjct: 262 CIPDSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLIDGLFRARRFEDAQ 321

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
             + K        N+ P+VI Y  ++ GL K G       L  +M  RG+ PD   YN+L
Sbjct: 322 VWYRKMT----EHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNAL 377

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           I+ YC     ++AK        LH E    +      C     +Y  +I  +C+  LV  
Sbjct: 378 IKGYCDLGLLDEAKS-------LHLEISKND------CFSSACTYTILICGMCRSGLVGD 424

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE-----------SEGC- 345
           A+++F +M+  G  P VV +++LIDG+C  G I+ A+ LF  +E           S+G  
Sbjct: 425 AQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKMEIGRNPSLFLRLSQGAN 484

Query: 346 -IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL 404
            + DT+S  T++                          D+  IL+A  +   L ++ F  
Sbjct: 485 RVLDTASLQTMVEQLC----------------------DSGLILKAYNILMQLTDSGFAP 522

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           ++  +N L+ G CK+  +  A++LFK+L   G  P+ VTY  +I GL      E A+ +L
Sbjct: 523 NIITYNILIHGFCKAGNINGAFKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVL 582

Query: 465 PDM 467
             +
Sbjct: 583 DQI 585



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 155/349 (44%), Gaps = 39/349 (11%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD  + N +++   +   V  A     R+L+    P++ T   LI G+C  GK   A  +
Sbjct: 159 PDVFTYNTVLHVMVRKEVVLLALGIYNRMLKLNCLPNIATFSILIDGMCKSGKTQNALQM 218

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F +      +  ++PN I Y  II GLC+    +    LF+ MK  G  PD+  YN+L+ 
Sbjct: 219 FDEMT----QRRILPNKITYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDSVTYNALLH 274

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            +C         G    AL L + F      L      D   Y  +I+ L +    + A+
Sbjct: 275 GFC-------KLGRVDEALGLLKYFEKDRYVL------DKQGYSCLIDGLFRARRFEDAQ 321

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
             +  M    I PDV++Y+ ++ G    G+  DA +L   +   G +PDT  YN LI  Y
Sbjct: 322 VWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNALIKGY 381

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
             +  ++EA SL+ E+        N C   A                  +  L+ G+C+S
Sbjct: 382 CDLGLLDEAKSLHLEI------SKNDCFSSAC----------------TYTILICGMCRS 419

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
             +  A ++F ++ ++G  P+VVT+  +I G C  G IEKA  L   ME
Sbjct: 420 GLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKME 468



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/431 (23%), Positives = 179/431 (41%), Gaps = 61/431 (14%)

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           F  M      P + ++N++L  +  K+  +  + +  R+  +  LP+  + +IL++  CK
Sbjct: 149 FEMMKDFDCKPDVFTYNTVLHVMVRKEVVLLALGIYNRMLKLNCLPNIATFSILIDGMCK 208

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
                +A      + ++   P+ +T   +I GLC   K   A  LF       C    IP
Sbjct: 209 SGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVAYRLFIAMKDHGC----IP 264

Query: 195 NVICYASIIDGLCKDGFVNK-----------------------------------VRVLF 219
           + + Y +++ G CK G V++                                    +V +
Sbjct: 265 DSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLIDGLFRARRFEDAQVWY 324

Query: 220 LDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDV 279
             M    I PD  +Y  +++    A  ++DA              +N   E G++  PD 
Sbjct: 325 RKMTEHNIKPDVILYTIMMKGLSKAGKFKDAL-----------RLLNEMTERGLV--PDT 371

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
             Y ++I   C   L+D+AK L L++           Y+ LI G C  G + DA+++F  
Sbjct: 372 HCYNALIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTILICGMCRSGLVGDAQQIFNE 431

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN 399
           +E  GC P   ++N LI+ + K   +E+A  L+ +M  +G  P        +   R    
Sbjct: 432 MEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKM-EIGRNP--------SLFLRLSQG 482

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
               LD      +V+ LC S  +  A+ +  +L   G  PN++TY ++I G C  G I  
Sbjct: 483 ANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFCKAGNING 542

Query: 460 AYDLLPDMEEK 470
           A+ L  +++ K
Sbjct: 543 AFKLFKELQLK 553



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 130/273 (47%), Gaps = 35/273 (12%)

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            +  +I    K   + K    F  MK     PD F YN+++ V          K     A
Sbjct: 128 AFTVLIQAYAKMDMIEKAVESFEMMKDFDCKPDVFTYNTVLHVMV-------RKEVVLLA 180

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
           L ++   +  N      C P++ ++  +I+ +CK      A ++F +M  R I+P+ + Y
Sbjct: 181 LGIYNRMLKLN------CLPNIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNKITY 234

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           + +I G C   + D A +LF++++  GCIPD+ +YN L++ + K+ +V+EAL        
Sbjct: 235 TIIISGLCQAQKADVAYRLFIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALG------- 287

Query: 378 MGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
                          L +     ++ LD   ++CL+DGL ++ R   A   ++K+  +  
Sbjct: 288 ---------------LLKYFEKDRYVLDKQGYSCLIDGLFRARRFEDAQVWYRKMTEHNI 332

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           +P+V+ YT+M+ GL   G  + A  LL +M E+
Sbjct: 333 KPDVILYTIMMKGLSKAGKFKDALRLLNEMTER 365



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 160/375 (42%), Gaps = 42/375 (11%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD +   I+M    K     DA   L  +  +   PD      LI+G C  G   EA  L
Sbjct: 334 PDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNALIKGYCDLGLLDEAKSL 393

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             +    DC      +   Y  +I G+C+ G V   + +F +M+  G YP    +N+LI 
Sbjct: 394 HLEISKNDC----FSSACTYTILICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTFNALID 449

Query: 240 VYCCAVNWEDAK---------GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
            +C A N E A+          N S  L L +     N  L      D  S  +++  LC
Sbjct: 450 GFCKAGNIEKAQLLFYKMEIGRNPSLFLRLSQ---GANRVL------DTASLQTMVEQLC 500

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
              L+ KA  + + +   G  P+++ Y+ LI G+C  G I+ A KLF  ++ +G  PD+ 
Sbjct: 501 DSGLILKAYNILMQLTDSGFAPNIITYNILIHGFCKAGNINGAFKLFKELQLKGLSPDSV 560

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL--HNTKFELDLTV 408
           +Y TLIN      + E+A ++  +++  G  P    I E  + F T      K  L  ++
Sbjct: 561 TYGTLINGLLSANREEDAFTVLDQILKNGCTP----ITEVYKSFMTWSCRRNKITLAFSL 616

Query: 409 FNCLVDGLC--KSWRLRSAWELFKK------------LPRYGPEPNVVTYTVMICGLCIE 454
           +   +  +    S  L+S  E F+K            +     +  +  YT+ + GLC  
Sbjct: 617 WLKYLRSIPGRDSEVLKSVEENFEKGEVEEAVRGLLEMDFKLNDFQLAPYTIWLIGLCQA 676

Query: 455 GGIEKAYDLLPDMEE 469
           G +E+A  +   +EE
Sbjct: 677 GRLEEALKIFFTLEE 691



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 98/209 (46%), Gaps = 24/209 (11%)

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           +S+  II+ L KD   +   ++  ++K  G       ++ LI  Y  M  I+ A + F  
Sbjct: 92  VSHNMIIDMLIKDNGFELYWQVLKEIKRCGFSISADAFTVLIQAYAKMDMIEKAVESFEM 151

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN 399
           ++   C PD  +YNT+++   + E V  AL +Y  M+ +   P                 
Sbjct: 152 MKDFDCKPDVFTYNTVLHVMVRKEVVLLALGIYNRMLKLNCLP----------------- 194

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
                ++  F+ L+DG+CKS + ++A ++F ++ +    PN +TYT++I GLC     + 
Sbjct: 195 -----NIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKADV 249

Query: 460 AYDLLPDMEEK--IRECLKAIELLHKMAK 486
           AY L   M++   I + +    LLH   K
Sbjct: 250 AYRLFIAMKDHGCIPDSVTYNALLHGFCK 278



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 134/341 (39%), Gaps = 42/341 (12%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFM------------PSFNSLLGALAGKKYYVNFICL 109
           K+G +E    L F+   I   P+ F+             S  +++  L      +    +
Sbjct: 453 KAGNIE-KAQLLFYKMEIGRNPSLFLRLSQGANRVLDTASLQTMVEQLCDSGLILKAYNI 511

Query: 110 SERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCM 169
             +L   G  P+ ++ NIL++ FCK   ++ AF     +  K  SPD VT G LI GL  
Sbjct: 512 LMQLTDSGFAPNIITYNILIHGFCKAGNINGAFKLFKELQLKGLSPDSVTYGTLINGLLS 571

Query: 170 QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYP 229
             +  +A  +  + +   C P  I  V  Y S +   C+    NK+ + F          
Sbjct: 572 ANREEDAFTVLDQILKNGCTP--ITEV--YKSFMTWSCRR---NKITLAF---------- 614

Query: 230 DAFVYNSLIRVYCCAVNWEDAKGNTSAALELH----EEFVNGNGELGVICHPDVLS-YCS 284
                 SL   Y  ++   D++   S          EE V G  E+    +   L+ Y  
Sbjct: 615 ------SLWLKYLRSIPGRDSEVLKSVEENFEKGEVEEAVRGLLEMDFKLNDFQLAPYTI 668

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
            +  LC+   +++A ++F  ++   ++        LI     +G +D A ++F+    +G
Sbjct: 669 WLIGLCQAGRLEEALKIFFTLEEHNVLVTPPSCVKLIYRLLKVGNLDLAAEIFLYTIDKG 728

Query: 345 CIPDTSSYNTLINSYSKIE-KVEEALSLYGEMISMGVRPDN 384
            +      N L+ S  + E K   A  L   M S+G   D+
Sbjct: 729 YMLMPRICNRLLKSLLRSEDKRNRAFDLLSRMKSLGYDLDS 769


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 122/458 (26%), Positives = 200/458 (43%), Gaps = 66/458 (14%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L+ AL  FN M      P   ++++L+  L           L   +   G+LP   +  
Sbjct: 435 DLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCT 494

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
             +   C M    DA+     +  K   P+V T   LI GLC+ G    A GLF +    
Sbjct: 495 GPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRM--- 551

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR-GIYPDAFVYNSLIRVYCCAV 245
             R  V PN + Y ++I+ L ++  + K   + L++ GR G++ +   YN +I+ YC   
Sbjct: 552 -SRDGVFPNTVTYNALINILVENRRI-KYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILG 609

Query: 246 NWEDA----------------------------KGNTSAALELHEEFVNGNGELGVICHP 277
           + + A                             GNT++AL + +   +G       C P
Sbjct: 610 DPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGG------CKP 663

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           D  SY  +I   CK   ++ A  LF +M   G+ P+ V Y++LIDGYC   ++D A  L 
Sbjct: 664 DEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLL 723

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397
             ++  GC P+  +YN LI+  +K      A  L   MI  G+ P+              
Sbjct: 724 EHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPN-------------- 769

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                   +  +  ++DGLCK+     A E+F K+   G  PN++TY+ +I  L  EG +
Sbjct: 770 --------VVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKV 821

Query: 458 EKAYDLLPDMEEKIRECLKAIELLH-KMAKRYVKPDEI 494
           E+A +L  ++E   R  L   E+ + KM + Y+   ++
Sbjct: 822 EEAENLFAELE---RHGLIPDEITYVKMIEAYIMSGKV 856



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 125/480 (26%), Positives = 196/480 (40%), Gaps = 99/480 (20%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
            R+ + G+ P+ +  N ++N  CK   V+DA   + ++     SPD  T   +I G C +
Sbjct: 374 HRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRK 433

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV--------------- 215
                A  +F +     C PN +     Y+++I+GLC  G VN+                
Sbjct: 434 HDLDSALQVFNQMAKEGCEPNTVT----YSTLINGLCDSGRVNEAFDLIREMILHGILPT 489

Query: 216 --------------------RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG--- 252
                                 LF+DMK +G  P+ + Y +LI   C +   + A G   
Sbjct: 490 AHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFH 549

Query: 253 ---------NT---SAALELHEE---------FVNGNGELGVICHPDVLSYCSIINSLCK 291
                    NT   +A + +  E          +N  G  G+    ++++Y  +I   C 
Sbjct: 550 RMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLF--TNIVTYNEMIKGYC- 606

Query: 292 DVLVDKAKELFL--DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
            +L D  K + +  +M  RG   ++V Y+++I GYC  G    A ++   +   GC PD 
Sbjct: 607 -ILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDE 665

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSCILE----AAELFRT 396
            SY  LI  + KI K+E A  L+ EM+  G+ P         D  C  E    A  L   
Sbjct: 666 WSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEH 725

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           +  +    ++  +N L+ GL K      A EL K +   G  PNVVTYT MI GLC  G 
Sbjct: 726 MKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGS 785

Query: 457 IEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
              A                 +E+ +KM ++   P+ +T S L   L ++    E  NL 
Sbjct: 786 TSLA-----------------LEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLF 828



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 98/385 (25%), Positives = 176/385 (45%), Gaps = 41/385 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALA-GKKYYVNFICLSERLNTIGLLPDFVSLN 126
           L  A+  F+ M      P   ++N+L+  L   ++    F+ L+  +   GL  + V+ N
Sbjct: 541 LKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLN-LMGRNGLFTNIVTYN 599

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            ++  +C +     A + +  +L++  S ++VT   +I+G C  G  T A  +       
Sbjct: 600 EMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDG 659

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C+P+       Y  +I G CK   +     LF +M   G+ P+   Y +LI  YC    
Sbjct: 660 GCKPDEWS----YTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYC---- 711

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            +D K +T+ +L  H +           C P+V +Y  +I+ L K      A+EL   M 
Sbjct: 712 -KDEKLDTATSLLEHMKRSG--------CRPNVQTYNVLIHGLTKQNNFSGAEELCKVMI 762

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
             GI P+VV Y+++IDG C  G    A ++F  +  +GC+P+  +Y++LI +  +  KVE
Sbjct: 763 EEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVE 822

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           EA +L+ E+   G+ PD    ++                      +++    S ++  A+
Sbjct: 823 EAENLFAELERHGLIPDEITYVK----------------------MIEAYIMSGKVEHAF 860

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGL 451
               ++ + G +P + TY V+I GL
Sbjct: 861 NFLGRMIKAGCQPTLWTYGVLIKGL 885



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 122/244 (50%), Gaps = 27/244 (11%)

Query: 219 FLDMKGR-GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277
           FLDM  + G+    F Y++L+ ++   +      G T+A ++ +   ++     GV   P
Sbjct: 337 FLDMLSQSGLRMGLFAYSALL-IHLSRL------GMTAAVMDRYHRMLSE----GV--QP 383

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           ++L Y ++IN+LCKD  V  A+ +   +    + PD   Y+S+I G+C    +D A ++F
Sbjct: 384 NLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVF 443

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP-------------DN 384
             +  EGC P+T +Y+TLIN      +V EA  L  EMI  G+ P             D 
Sbjct: 444 NQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDM 503

Query: 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
            C  +A  LF  + N   E ++  +  L+ GLC S  L+ A  LF ++ R G  PN VTY
Sbjct: 504 GCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTY 563

Query: 445 TVMI 448
             +I
Sbjct: 564 NALI 567



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 176/422 (41%), Gaps = 51/422 (12%)

Query: 67   ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            ++  A   FN M+     P   ++ +L+      +       L E +   G  P+  + N
Sbjct: 680  KMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYN 739

Query: 127  ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            +L++   K    S A      ++ +   P+VVT   +I GLC  G  + A  +F K +  
Sbjct: 740  VLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQ 799

Query: 187  DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             C    +PN++ Y+S+I  L ++G V +   LF +++  G+ PD   Y  +I  Y  +  
Sbjct: 800  GC----LPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGK 855

Query: 247  WEDA--------KGNTSAAL--------ELHEEFVNGNGELGVICHPDVLSYCSI-INSL 289
             E A        K      L         L  E++  +  L  +  PDV+  CS    + 
Sbjct: 856  VEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAAL--PDVVPNCSFGYQTT 913

Query: 290  CKD-VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
             +D V V  AK   LD    G+   V V ++L+      GR  +A +L  S+ S+G  PD
Sbjct: 914  DQDAVSVMSAKLAELD---PGL--SVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPD 968

Query: 349  TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTV 408
              +YN+L+ S  ++  V+ A+ ++  M + G                       E+ L  
Sbjct: 969  QEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGC----------------------EVHLNG 1006

Query: 409  FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
            +  L+  LC+  R + A   F+ +      P+ V   V+I GL  +G  +   + L  ME
Sbjct: 1007 YKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIME 1066

Query: 469  EK 470
             +
Sbjct: 1067 TR 1068



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 131/304 (43%), Gaps = 56/304 (18%)

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA---- 250
            +  Y++++  L + G    V   +  M   G+ P+  +YN++I   C   N  DA    
Sbjct: 349 GLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIM 408

Query: 251 ------------------------KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII 286
                                   K +  +AL++  +           C P+ ++Y ++I
Sbjct: 409 KKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEG------CEPNTVTYSTLI 462

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           N LC    V++A +L  +M   GI+P     +  I   C MG  +DA +LFV ++++GC 
Sbjct: 463 NGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCE 522

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406
           P+  +Y  LI+       ++ A+ L+  M   GV P+                       
Sbjct: 523 PNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNT---------------------- 560

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             +N L++ L ++ R++ A+ +   + R G   N+VTY  MI G CI G  +KA  ++ +
Sbjct: 561 VTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNN 620

Query: 467 MEEK 470
           M ++
Sbjct: 621 MLQR 624


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/366 (28%), Positives = 165/366 (45%), Gaps = 39/366 (10%)

Query: 90  FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149
           FN L+          N   + + +   GL P  VS N L++  CK   V + F   G + 
Sbjct: 251 FNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEGFRLKGVME 310

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD 209
            +   PDV T   LI GLC +G+  E S LF +     C   ++PN + + ++IDG CK 
Sbjct: 311 SEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEM----CGRGLVPNGVTFTTLIDGQCKG 366

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
           G V+     F  M  +G+ PD   YN+LI   C   + ++A+             VN   
Sbjct: 367 GKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEAR-----------RLVNEMT 415

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
             G+   PD +++ ++I+  CKD  ++ A E+   M   GI  D V +++LI G C  GR
Sbjct: 416 ASGL--KPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGR 473

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE 389
           + DA ++   + S G  PD  +Y  +I+ + K   V+    L  EM S G  P       
Sbjct: 474 VHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVP------- 526

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
                           +  +N L++GLCK  ++++A  L   +   G  PN +TY +++ 
Sbjct: 527 ---------------GVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNILLD 571

Query: 450 GLCIEG 455
           G    G
Sbjct: 572 GHSKHG 577



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 162/337 (48%), Gaps = 44/337 (13%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P +  +  ++ G CK G V   R++F ++  RG+ P    +N+LI   CC        G+
Sbjct: 246 PKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLIS-GCCK------SGD 298

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
                 L      G  E   +C PDV ++ ++IN LCK+  +D+   LF +M  RG++P+
Sbjct: 299 VEEGFRL-----KGVMESEGVC-PDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPN 352

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
            V +++LIDG C  G++D A K F  + ++G  PD  +YN LIN   K+  ++EA  L  
Sbjct: 353 GVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVN 412

Query: 374 EMISMGVRPD--------NSC-----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           EM + G++PD        + C     +  A E+ R +     ELD   F  L+ GLC+  
Sbjct: 413 EMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREG 472

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE----------- 469
           R+  A  +   +   G +P+  TYT++I   C +G ++  + LL +M+            
Sbjct: 473 RVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYN 532

Query: 470 -------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                  K  +   A  LL  M    V P++IT +IL
Sbjct: 533 ALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNIL 569



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 168/351 (47%), Gaps = 39/351 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  P     N+LM+ FCK   V +A +    I ++   P VV+   LI G C  G   E 
Sbjct: 243 GYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEE- 301

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
            G   K V       V P+V  ++++I+GLCK+G +++  +LF +M GRG+ P+   + +
Sbjct: 302 -GFRLKGVMES--EGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTT 358

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI   C         G    AL+      N    L     PD+++Y ++IN LCK   + 
Sbjct: 359 LIDGQC-------KGGKVDLALK------NFQMMLAQGVRPDLVTYNALINGLCKVGDLK 405

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A+ L  +M + G+ PD + +++LIDG C  G ++ A ++   +  EG   D  ++  LI
Sbjct: 406 EARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALI 465

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           +   +  +V +A  +  +M+S G +PD+                        +  ++D  
Sbjct: 466 SGLCREGRVHDAGRMLTDMLSAGFKPDDP----------------------TYTMVIDCF 503

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           CK   ++  ++L K++   G  P VVTY  ++ GLC +G ++ A  LL  M
Sbjct: 504 CKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAM 554



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 134/301 (44%), Gaps = 22/301 (7%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLL-GALAGKKYYVNFICLSERLNTIGLLPDFV 123
           E  L++    F+ M      P   +F +L+ G   G K  +        L   G+ PD V
Sbjct: 331 EGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQ-GVRPDLV 389

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           + N L+N  CK+  + +A   +  +      PD +T   LI G C  G    A  +  + 
Sbjct: 390 TYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRM 449

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
           V       +  + + + ++I GLC++G V+    +  DM   G  PD   Y  +I  +C 
Sbjct: 450 V----EEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFC- 504

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                  KG+     +L +E +  +G +     P V++Y +++N LCK   +  AK L  
Sbjct: 505 ------KKGDVKMGFKLLKE-MQSDGHV-----PGVVTYNALMNGLCKQGQMKNAKMLLD 552

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            M + G+ P+ + Y+ L+DG+   G   D   +F S   +G + D +SY  L+N  SK  
Sbjct: 553 AMLNVGVAPNDITYNILLDGHSKHGSSVDV-DIFNS--EKGLVTDYASYTALVNESSKTS 609

Query: 364 K 364
           K
Sbjct: 610 K 610



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 118/262 (45%), Gaps = 31/262 (11%)

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           + V ++++  L+L++   G  P +  ++ L+ G+C  G + +AR +F  I   G  P   
Sbjct: 225 RPVEIERSWALYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVV 284

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTL 397
           S+NTLI+   K   VEE   L G M S GV PD                + E + LF  +
Sbjct: 285 SFNTLISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEM 344

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                  +   F  L+DG CK  ++  A + F+ +   G  P++VTY  +I GLC  G +
Sbjct: 345 CGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDL 404

Query: 458 EKAYDLLPDMEEK------------IRECLK------AIELLHKMAKRYVKPDEITVSIL 499
           ++A  L+ +M               I  C K      A+E+  +M +  ++ D++  + L
Sbjct: 405 KEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTAL 464

Query: 500 EELLNKDENCHECMNLLPSFLS 521
              L ++   H+   +L   LS
Sbjct: 465 ISGLCREGRVHDAGRMLTDMLS 486



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 68/325 (20%), Positives = 121/325 (37%), Gaps = 90/325 (27%)

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRG--------------IIPDV--------VVYS 318
           SYC++++ LC   ++ +A  L   + SR                +P          +V+ 
Sbjct: 121 SYCTMLHFLCLHRMLPQAHSLVSFLVSRKGTNSASTLFSSILRTMPRHHHHHHSVGLVFD 180

Query: 319 SLIDGYCLMGRIDDARK-------------------------------------LFVSIE 341
           +LI  Y   G   DA +                                     L++ + 
Sbjct: 181 ALISAYVDSGFTPDAVQCFRLVTKNKFPVPIRGCENLLRRVVRLRPVEIERSWALYLEVL 240

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------NSC-----IL 388
             G  P    +N L++ + K   V  A  ++ E+   G+RP         + C     + 
Sbjct: 241 DSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVE 300

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
           E   L   + +     D+  F+ L++GLCK  RL     LF ++   G  PN VT+T +I
Sbjct: 301 EGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLI 360

Query: 449 CGLCIEGGIEKA------------------YDLLPDMEEKIRECLKAIELLHKMAKRYVK 490
            G C  G ++ A                  Y+ L +   K+ +  +A  L+++M    +K
Sbjct: 361 DGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLK 420

Query: 491 PDEITVSILEELLNKDENCHECMNL 515
           PD+IT + L +   KD +    + +
Sbjct: 421 PDKITFTTLIDGCCKDGDMESALEI 445


>gi|242069901|ref|XP_002450227.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
 gi|241936070|gb|EES09215.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
          Length = 894

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 166/386 (43%), Gaps = 39/386 (10%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + ++ +++  L  K        L   +   GL P+    N ++   CK    S A   
Sbjct: 344 PTVVTYGAIIHWLGRKSDLTKIESLLWEMKERGLSPNVQIYNTVIYALCKCRSASQALAV 403

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           L +++   F PDVVT   LI   C +G   EA  L  + +    R  + PN + Y  +I 
Sbjct: 404 LNQMVASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAI----RRELEPNQLSYTPLIH 459

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           G C  G V     L ++M GRG  PD     +LI     +       G    AL + E+ 
Sbjct: 460 GFCVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVVS-------GQVDEALMVREKM 512

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
                E  V+  PD   Y  +I+ LCK  ++  AK L ++M  + + PD  VY++LIDG+
Sbjct: 513 A----ERQVM--PDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGF 566

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
               ++ DARK+F  +E +G   D  +YN +I  Y K   + EA+     M  +G  PD 
Sbjct: 567 IRSDKLSDARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDE 626

Query: 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
                                   +  L+DG  K   +++A      + +   +PN+VTY
Sbjct: 627 ----------------------FTYTTLIDGYAKKGDIKAALRFLCDMMKRRCKPNIVTY 664

Query: 445 TVMICGLCIEGGIEKAYDLLPDMEEK 470
             +ICG C  G  + A  L   M+ +
Sbjct: 665 ASLICGYCNIGNTDSAEVLFASMQSE 690



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 114/428 (26%), Positives = 187/428 (43%), Gaps = 41/428 (9%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           + AL   N M+  +  P + +FN+L+ A   +      + L        L P+ +S   L
Sbjct: 398 SQALAVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYTPL 457

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           ++ FC    V  A   L  ++ +  +PDVVTLG LI GL + G+  EA  +  K      
Sbjct: 458 IHGFCVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMA---- 513

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
              V+P+   Y  +I GLCK   ++  + L ++M  + + PD FVY +LI  +  +    
Sbjct: 514 ERQVMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLS 573

Query: 249 DAKGNTSAALELHEE------------FVNGNGELGVI--------------CHPDVLSY 282
           DA+       E  EE             + G  + G++              C PD  +Y
Sbjct: 574 DAR----KIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTY 629

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
            ++I+   K   +  A     DM  R   P++V Y+SLI GYC +G  D A  LF S++S
Sbjct: 630 TTLIDGYAKKGDIKAALRFLCDMMKRRCKPNIVTYASLICGYCNIGNTDSAEVLFASMQS 689

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF 402
           EG  P+   Y  LI S  K +K  +A + +  M+     P+++ +     L   L N ++
Sbjct: 690 EGLFPNVVHYTVLIGSLFKKDKAIQAAAYFEHMLLNHCSPNDATM---HYLVNGLTNCRY 746

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
            +     N       ++ +  +  ++FK L   G +P +  Y  +I  LC    + KA +
Sbjct: 747 GM----INSNCSDTDQAHKKSALLDVFKGLISDGLDPRISAYNAIIFSLCRHNMLGKAME 802

Query: 463 LLPDMEEK 470
           L   M  K
Sbjct: 803 LKEKMSNK 810



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 162/367 (44%), Gaps = 30/367 (8%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G +P  V  N+L++ +C+   V    + LG +  K   P VVT G +I  L  +   T+ 
Sbjct: 306 GCVPGAVFYNVLIDGYCRRGDVGRGLLLLGEMEMKGIMPTVVTYGAIIHWLGRKSDLTKI 365

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L  +         + PNV  Y ++I  LCK    ++   +   M      PD   +N+
Sbjct: 366 ESLLWEMK----ERGLSPNVQIYNTVIYALCKCRSASQALAVLNQMVASRFDPDVVTFNT 421

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI  +C        +G+   AL+L  E +    E      P+ LSY  +I+  C    V 
Sbjct: 422 LIAAFC-------REGDVEEALKLLREAIRRELE------PNQLSYTPLIHGFCVRGEVM 468

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A +L ++M  RG  PDVV   +LI G  + G++D+A  +   +     +PD + YN LI
Sbjct: 469 VASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPDANIYNVLI 528

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFE 403
           +   K   +  A +L  EM+   V+PD             +  + +A ++F  +      
Sbjct: 529 SGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKGGY 588

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D+  +N ++ G CKS  +  A      + + G  P+  TYT +I G   +G I+ A   
Sbjct: 589 RDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLIDGYAKKGDIKAALRF 648

Query: 464 LPDMEEK 470
           L DM ++
Sbjct: 649 LCDMMKR 655



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 142/336 (42%), Gaps = 42/336 (12%)

Query: 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCS 284
            G  PDA   N L+R+      WE A+        L+ E +  + E G     D  S C 
Sbjct: 233 HGALPDAPHCNRLLRLLVDRRRWECAR-------RLYGEMLARDREGGA----DDYSTCV 281

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           ++  LC +  V++ + L       G +P  V Y+ LIDGYC  G +     L   +E +G
Sbjct: 282 MVRGLCLEGRVEEGRRLIEARWGEGCVPGAVFYNVLIDGYCRRGDVGRGLLLLGEMEMKG 341

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCIL---------EAA 391
            +P   +Y  +I+   +   + +  SL  EM   G+ P+    N+ I          +A 
Sbjct: 342 IMPTVVTYGAIIHWLGRKSDLTKIESLLWEMKERGLSPNVQIYNTVIYALCKCRSASQAL 401

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
            +   +  ++F+ D+  FN L+   C+   +  A +L ++  R   EPN ++YT +I G 
Sbjct: 402 AVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYTPLIHGF 461

Query: 452 CIEGGIEKAYDLLPDMEEKIR------------------ECLKAIELLHKMAKRYVKPDE 493
           C+ G +  A DLL +M  +                    +  +A+ +  KMA+R V PD 
Sbjct: 462 CVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPDA 521

Query: 494 ITVSILEELLNKDENCHECMNLLPSFLSRNQEESKL 529
              ++L   L K        NLL   L +  +  K 
Sbjct: 522 NIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKF 557



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 127/305 (41%), Gaps = 44/305 (14%)

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           D V+ N ++  +CK   +++A + +  + +    PD  T   LI G   +G    A    
Sbjct: 590 DIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLIDGYAKKGDIKAALRFL 649

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI-- 238
              +   C+PN++     YAS+I G C  G  +   VLF  M+  G++P+   Y  LI  
Sbjct: 650 CDMMKRRCKPNIV----TYASLICGYCNIGNTDSAEVLFASMQSEGLFPNVVHYTVLIGS 705

Query: 239 -----RVYCCAVNWEDAKGNTSAALELHEEF-VNG--NGELGVI---------CH----- 276
                +    A  +E    N  +  +    + VNG  N   G+I          H     
Sbjct: 706 LFKKDKAIQAAAYFEHMLLNHCSPNDATMHYLVNGLTNCRYGMINSNCSDTDQAHKKSAL 765

Query: 277 -------------PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
                        P + +Y +II SLC+  ++ KA EL   M ++G +PD V + SL+ G
Sbjct: 766 LDVFKGLISDGLDPRISAYNAIIFSLCRHNMLGKAMELKEKMSNKGCLPDPVTFLSLLYG 825

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY--SKI-EKVEEALSLYGEMISMGV 380
           +  +G+    R    +   +        Y TL+N +  S + ++V   L LY E      
Sbjct: 826 FSSVGKSGKWRSALPNEFQQDEFEIICKYMTLLNQHVMSPVRDEVSRVLQLYAEEFQFLQ 885

Query: 381 RPDNS 385
           +P+ S
Sbjct: 886 QPEQS 890


>gi|357140400|ref|XP_003571756.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Brachypodium distachyon]
          Length = 673

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 121/489 (24%), Positives = 204/489 (41%), Gaps = 66/489 (13%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERL-NTIGLLPDFVSLNILMNCFCKMIGVSDAF 142
           +P   S+N++L A A    + + + L  R+ +   + P   + +I     C++    +A 
Sbjct: 133 SPSFRSYNTVLAAFARADCHTDVLSLYRRMVHRDRVPPTTFTFSIAARALCRLGRADEAL 192

Query: 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202
             L  + R    PD V    +I  LC QG   EA+ L  +     C  +V      +  I
Sbjct: 193 TMLRSMARHGCVPDTVLYQTVIHALCAQGGVNEAATLLDEMFLMGCSADVN----TFNDI 248

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK----------- 251
           + GLC  G + +   L   M  RG  P+A  Y  L++  C A   E+A+           
Sbjct: 249 VHGLCTLGRLREAARLVDRMMIRGCVPNAITYGFLLKGLCLASQVEEARTMLGRVPELNV 308

Query: 252 -------------GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
                        G    A EL+E      G  G  C PD  +Y  +I+ LCK   +  A
Sbjct: 309 VLFNTVIGRCLLDGKLKEAAELYETM----GSKG--CPPDAHTYSILIHGLCKLGRLGSA 362

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
            +L  +M+ +G  P +V Y+ L+  +C  G  D+ R +   +  +G   +   YN +I +
Sbjct: 363 MKLLREMEDKGFAPSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICA 422

Query: 359 YSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELD 405
             K  ++++A+    EM S G +PD             N+ + EA  LF  L +     +
Sbjct: 423 VCKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVAN 482

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
              +N L+  L ++   + A  L   +  +G   ++V+Y  +I  LC +G ++++  LL 
Sbjct: 483 AITYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLS 542

Query: 466 DMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDE 507
           +M E                  K R    A+EL  +M  + + PD +T + L   L K  
Sbjct: 543 EMAEKGIKPNNVSYNLLISELCKTRRVRDALELSKEMLNQELTPDIVTYNTLINGLCKMG 602

Query: 508 NCHECMNLL 516
             H  +NLL
Sbjct: 603 WMHAALNLL 611



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 107/419 (25%), Positives = 188/419 (44%), Gaps = 40/419 (9%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +N+A    + M  M  +  + +FN ++  L           L +R+   G +P+ ++   
Sbjct: 223 VNEAATLLDEMFLMGCSADVNTFNDIVHGLCTLGRLREAARLVDRMMIRGCVPNAITYGF 282

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+   C    V +A   LGR    V   +VV    +I    + GK  EA+ L+    +  
Sbjct: 283 LLKGLCLASQVEEARTMLGR----VPELNVVLFNTVIGRCLLDGKLKEAAELYETMGSKG 338

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C P+       Y+ +I GLCK G +     L  +M+ +G  P    Y  L+  +C    W
Sbjct: 339 CPPDAH----TYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTYTILLHSFCRNGMW 394

Query: 248 EDAKGNTSAALELHEE---FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
           +    N  A LE+  +    +N  G  G+IC            ++CKD  +D A     +
Sbjct: 395 D----NIRAMLEVMSDKGLSMNLEGYNGMIC------------AVCKDRRMDDAMRFMQE 438

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           MKS+G  PD+  Y+++I   C   ++++A  LF ++  EG + +  +YNTLI++  +   
Sbjct: 439 MKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTLIHALLRNGS 498

Query: 365 VEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNC 411
            ++A+SL  +M+  G   D             +  +  +  L   +     + +   +N 
Sbjct: 499 WQDAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNL 558

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           L+  LCK+ R+R A EL K++      P++VTY  +I GLC  G +  A +LL  +  +
Sbjct: 559 LISELCKTRRVRDALELSKEMLNQELTPDIVTYNTLINGLCKMGWMHAALNLLEKLHNE 617



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 155/362 (42%), Gaps = 48/362 (13%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L E + + G  PD  + +IL++  CK+  +  A   L  +  K F+P +VT   L+   C
Sbjct: 330 LYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTYTILLHSFC 389

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
             G +     +    V  D    +  N+  Y  +I  +CKD  ++       +MK +G  
Sbjct: 390 RNGMWDNIRAMLE--VMSD--KGLSMNLEGYNGMICAVCKDRRMDDAMRFMQEMKSQGYK 445

Query: 229 PDAFVYNSLIRVYCCAVNWEDAK---------GNTSAALE----LHEEFVNGNGELGVI- 274
           PD   YN++I   C     E+A+         G  + A+     +H    NG+ +  +  
Sbjct: 446 PDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTLIHALLRNGSWQDAISL 505

Query: 275 --------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
                   C  D++SY  +I +LC+D  VD++  L  +M  +GI P+ V Y+ LI   C 
Sbjct: 506 ANDMVLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNLLISELCK 565

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC 386
             R+ DA +L   + ++   PD  +YNTLIN   K+  +  AL+                
Sbjct: 566 TRRVRDALELSKEMLNQELTPDIVTYNTLINGLCKMGWMHAALN---------------- 609

Query: 387 ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTV 446
                 L   LHN     D+  +N L+   CK+  L  A  L  +    G  PN  T+ +
Sbjct: 610 ------LLEKLHNEDVHADIITYNILISWHCKARLLHDASMLLNRAVTSGITPNERTWGI 663

Query: 447 MI 448
           M+
Sbjct: 664 MV 665



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 122/275 (44%), Gaps = 17/275 (6%)

Query: 87  MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALG 146
           +  +N ++ A+   +   + +   + + + G  PD  + N ++   C    + +A     
Sbjct: 413 LEGYNGMICAVCKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFE 472

Query: 147 RILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGL 206
            +L +    + +T   LI  L   G + +A  L    V   C  +++     Y  +I  L
Sbjct: 473 NLLHEGVVANAITYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIV----SYNGLIKAL 528

Query: 207 CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266
           C+DG V++  +L  +M  +GI P+   YN LI   C      DA       LEL +E +N
Sbjct: 529 CRDGNVDRSIMLLSEMAEKGIKPNNVSYNLLISELCKTRRVRDA-------LELSKEMLN 581

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
              EL     PD+++Y ++IN LCK   +  A  L   + +  +  D++ Y+ LI  +C 
Sbjct: 582 Q--ELT----PDIVTYNTLINGLCKMGWMHAALNLLEKLHNEDVHADIITYNILISWHCK 635

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
              + DA  L     + G  P+  ++  ++ ++ +
Sbjct: 636 ARLLHDASMLLNRAVTSGITPNERTWGIMVQNFVR 670



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 4/184 (2%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++ +A   F  ++H        ++N+L+ AL     + + I L+  +   G   D VS N
Sbjct: 463 QMEEAEYLFENLLHEGVVANAITYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYN 522

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+   C+   V  + + L  +  K   P+ V+   LI  LC   +  +A  L  + +  
Sbjct: 523 GLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNLLISELCKTRRVRDALELSKEML-- 580

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                + P+++ Y ++I+GLCK G+++    L   +    ++ D   YN LI  +C A  
Sbjct: 581 --NQELTPDIVTYNTLINGLCKMGWMHAALNLLEKLHNEDVHADIITYNILISWHCKARL 638

Query: 247 WEDA 250
             DA
Sbjct: 639 LHDA 642



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 83/203 (40%), Gaps = 9/203 (4%)

Query: 39  LHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALA 98
           LH   V+       L+  L  N         DA+   N M+    +  + S+N L+ AL 
Sbjct: 475 LHEGVVANAITYNTLIHALLRNGS-----WQDAISLANDMVLHGCSLDIVSYNGLIKALC 529

Query: 99  GKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVV 158
                   I L   +   G+ P+ VS N+L++  CK   V DA      +L +  +PD+V
Sbjct: 530 RDGNVDRSIMLLSEMAEKGIKPNNVSYNLLISELCKTRRVRDALELSKEMLNQELTPDIV 589

Query: 159 TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVL 218
           T   LI GLC  G    A  L  K    D    V  ++I Y  +I   CK   ++   +L
Sbjct: 590 TYNTLINGLCKMGWMHAALNLLEKLHNED----VHADIITYNILISWHCKARLLHDASML 645

Query: 219 FLDMKGRGIYPDAFVYNSLIRVY 241
                  GI P+   +  +++ +
Sbjct: 646 LNRAVTSGITPNERTWGIMVQNF 668


>gi|326510071|dbj|BAJ87252.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 825

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 128/530 (24%), Positives = 221/530 (41%), Gaps = 62/530 (11%)

Query: 35  EPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLL 94
           +PS + S++ +       L+ Y S  S++    L   L  F  M+     P   ++N+L+
Sbjct: 47  DPSDVRSHNAA-------LIAYSSRGSRA--PRLAHLLASFGAMLKSGAPPNRCTYNTLI 97

Query: 95  GALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK---MIGVSDAFVALGRILRK 151
            A        +      R+   GL PD  + N LM   C+   +      FV + R    
Sbjct: 98  NAHCKLALLADARAALVRMREAGLAPDTFTYNCLMLGLCRAGLLAAACGLFVQMPRRWGA 157

Query: 152 VFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF 211
            +  D  +   LI+GLC  G+  +A  +F K     CRP V      Y  ++DGLCK   
Sbjct: 158 CY--DRYSYTILIKGLCAAGRIDDACRVFAKMSRGWCRPGVHT----YTVLLDGLCKVRR 211

Query: 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGEL 271
           V +   L  +M  +G+ P+   YN+LI   C    ++D        +E+           
Sbjct: 212 VGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVT-KLLEKMEIQRH-------- 262

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
                PD  +Y  +++ LCK   V    ++  +   +G+  +V+ Y++LI+GYC  G + 
Sbjct: 263 ----SPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYCKGGDMK 318

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCI 387
            A  +   ++     P   ++N +I+ +    KV +A++   +M   G+ P+    NS I
Sbjct: 319 AALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLI 378

Query: 388 LE---------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
                      A  L   +       D   +   +D LC   +L  A  LF  LP  G +
Sbjct: 379 SGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGIK 438

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDL---------LPDMEE---------KIRECLKAIEL 480
            + V YT ++ G C  G I+ A+ L         +PD+           K++   +AI+L
Sbjct: 439 AHNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAIDL 498

Query: 481 LHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           L KM K+ ++P   T +IL + +  D+   +   +    +S   +  K T
Sbjct: 499 LDKMKKQGIEPTTCTFNILIKQMLWDKKHADAAKMYEQMISSGCKPDKQT 548



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 128/485 (26%), Positives = 208/485 (42%), Gaps = 69/485 (14%)

Query: 47  VEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNF 106
           V   T LL  L +  + GE E          M++    P + ++N+L+G L  +  + + 
Sbjct: 196 VHTYTVLLDGLCKVRRVGEAE-----ALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDV 250

Query: 107 ICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166
             L E++      PD  +   +++  CK   V      L   + K  + +V+T   LI G
Sbjct: 251 TKLLEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALING 310

Query: 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
            C  G    A  +         R  V P V  +  +I G C  G V+K       M G G
Sbjct: 311 YCKGGDMKAALDVLQLMK----RNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAG 366

Query: 227 IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII 286
           + P+   +NSLI   C       + G    AL L    ++   E GV+  PD  +Y   I
Sbjct: 367 LSPNTVTFNSLISGQC-------SVGERKIALRL----LDLMEEYGVL--PDRQTYAIFI 413

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           ++LC +  +++A  LF  +  +GI    V+Y+SL+ GYC +G ID A  L   + SE C+
Sbjct: 414 DALCDEGQLEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCM 473

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406
           PD  +YNTLI+   K+++++ A+ L  +M   G+ P  +C                    
Sbjct: 474 PDVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQGIEP-TTC-------------------- 512

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI-EKAYDL-- 463
             FN L+  +    +   A ++++++   G +P+  TYT+ I     EG   E+  D+  
Sbjct: 513 -TFNILIKQMLWDKKHADAAKMYEQMISSGCKPDKQTYTLKISTDWFEGATKEENIDMAV 571

Query: 464 --------LPDME-----------EKIRECLKAIELLHKMAKRYVKPDEITVSI-LEELL 503
                    PD+E             ++E  KA     KM    + PD  T SI L  + 
Sbjct: 572 VEMHEAGVFPDVETYNAIIKAYVDAGLKE--KAFFAHVKMLSVPIDPDCTTYSILLNYMC 629

Query: 504 NKDEN 508
           NKD++
Sbjct: 630 NKDDS 634



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/377 (20%), Positives = 151/377 (40%), Gaps = 53/377 (14%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L E++ +   +PD  + N L++  CK+  +  A   L ++ ++   P   T   LI+ + 
Sbjct: 463 LMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQGIEPTTCTFNILIKQML 522

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYAS-IIDGLCKDGFVNKVRVLFLDMKGRGI 227
              K  +A+ ++ + ++  C+P+     +  ++   +G  K+     + +  ++M   G+
Sbjct: 523 WDKKHADAAKMYEQMISSGCKPDKQTYTLKISTDWFEGATKE---ENIDMAVVEMHEAGV 579

Query: 228 YPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIIN 287
           +PD   YN++I+ Y  A       G    A   H +       L V   PD  +Y  ++N
Sbjct: 580 FPDVETYNAIIKAYVDA-------GLKEKAFFAHVKM------LSVPIDPDCTTYSILLN 626

Query: 288 SLC--------------KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
            +C              K V V   +ELF  M      P +  Y +L+ G C   R+++ 
Sbjct: 627 YMCNKDDSDAFDNEKIWKMVDVRNLQELFEQMCESDAAPGISTYKALLRGLCNQCRLEEV 686

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAEL 393
             L + ++    + D    + L+  Y  +E                         EA E 
Sbjct: 687 EWLLLKMQGNSILLDEDMSDYLLGCYCNLEMYR----------------------EACEQ 724

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
           FR++ +  F+  L     L+ GLC S     A  +F  +   G   + V + ++I  L  
Sbjct: 725 FRSMAHQSFQPGLKSCCLLLSGLCDSGDHGMAVSIFSDMLGLGYNYDEVVWKLLIDCLHE 784

Query: 454 EGGIEKAYDLLPDMEEK 470
           +G      ++L  M+ K
Sbjct: 785 KGHAGACLEMLSVMDAK 801



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 100/255 (39%), Gaps = 25/255 (9%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG- 171
           ++  G+ PD  + N ++  +        AF A  ++L     PD  T   L+  +C +  
Sbjct: 574 MHEAGVFPDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVPIDPDCTTYSILLNYMCNKDD 633

Query: 172 ----------KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD 221
                     K  +   L   F    C  +  P +  Y +++ GLC    + +V  L L 
Sbjct: 634 SDAFDNEKIWKMVDVRNLQELFEQM-CESDAAPGISTYKALLRGLCNQCRLEEVEWLLLK 692

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
           M+G  I  D  + + L+  YC    + +A     +    H+ F            P + S
Sbjct: 693 MQGNSILLDEDMSDYLLGCYCNLEMYREACEQFRSMA--HQSF-----------QPGLKS 739

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
            C +++ LC       A  +F DM   G   D VV+  LID     G      ++   ++
Sbjct: 740 CCLLLSGLCDSGDHGMAVSIFSDMLGLGYNYDEVVWKLLIDCLHEKGHAGACLEMLSVMD 799

Query: 342 SEGCIPDTSSYNTLI 356
           ++ C+  T +Y +L+
Sbjct: 800 AKKCVASTRTYASLV 814


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 117/429 (27%), Positives = 192/429 (44%), Gaps = 71/429 (16%)

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
            + NI++   C     + A      +LR++  P+ VT   +I G C +G+   A  +  +
Sbjct: 155 TTFNIMLRHLCSAGKPARAL----ELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMRE 210

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG-IYPDAFVYNSLIRVY 241
                 R  + PN   Y ++I G CK G V++   +F +M  +G + P+A +YN+LI  Y
Sbjct: 211 MRE---RGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGY 267

Query: 242 C------CAVNWEDAKGNTSAALEL-------HEEFVNGNG----EL-----GVICHPDV 279
           C       A+ + D       A+ +       H  F++G G    EL     G     DV
Sbjct: 268 CDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDV 327

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
            +Y  +IN  CK+  V KA E+F +M  RG+   VV Y+SLI      G++ +  KLF  
Sbjct: 328 FTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDE 387

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN 399
               G  PD   YN LINS+S    ++ A  + GEM    + PD+               
Sbjct: 388 AVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDD--------------- 432

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
                    +N L+ GLC   R+  A +L  ++ + G +P++VTY  +I G  ++G ++ 
Sbjct: 433 -------VTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKD 485

Query: 460 AYDLLPDMEEK------------IRECLK------AIELLHKMAKRYVKPDEIT-VSILE 500
           A  +  +M  K            I+   K      A  ++ +M +  + PD+ T +S++E
Sbjct: 486 ALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIE 545

Query: 501 ELLNKDENC 509
            L  +DE  
Sbjct: 546 GLTTEDERA 554



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 106/347 (30%), Positives = 161/347 (46%), Gaps = 49/347 (14%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ V  N L+  +C    +  A +   R++ +  +  V T   L+  L M G+ TEA  L
Sbjct: 255 PEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYEL 314

Query: 180 FT----KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
                 K +A D        V  Y  +I+G CK+G V K   +F +M  RG+      Y 
Sbjct: 315 VEEMGGKGLALD--------VFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYT 366

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           SLI  Y  +      KG      +L +E V           PD++ Y ++INS      +
Sbjct: 367 SLI--YALS-----KKGQVQETDKLFDEAVRRG------IRPDLVLYNALINSHSTSGNI 413

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           D+A E+  +M+ + I PD V Y++L+ G CL+GR+D+ARKL   +   G  PD  +YNTL
Sbjct: 414 DRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTL 473

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDG 415
           I+ YS    V++AL +  EM++ G  P                       L  +N L+ G
Sbjct: 474 ISGYSMKGDVKDALRIRNEMMNKGFNP----------------------TLLTYNALIQG 511

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
           LCK+ +   A  + K++   G  P+  TY  +I GL  E   E+A D
Sbjct: 512 LCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTED--ERAID 556



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 156/333 (46%), Gaps = 22/333 (6%)

Query: 67  ELNDALCFFNYMI---HMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV 123
            +++A+  F+ M+    ++P   M  +N+L+G    +      +   +R+   G+     
Sbjct: 236 RVDEAVKVFDEMLTKGEVKPEAVM--YNALIGGYCDQGKLDTALLYRDRMVERGVAMTVA 293

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           + N+L++        ++A+  +  +  K  + DV T   LI G C +G   +A  +F   
Sbjct: 294 TYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENM 353

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
                R  V   V+ Y S+I  L K G V +   LF +   RGI PD  +YN+LI     
Sbjct: 354 ----SRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALI----- 404

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
             N     GN   A E+  E             PD ++Y +++  LC    VD+A++L  
Sbjct: 405 --NSHSTSGNIDRAFEIMGEMEKKR------IAPDDVTYNTLMRGLCLLGRVDEARKLID 456

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
           +M  RGI PD+V Y++LI GY + G + DA ++   + ++G  P   +YN LI    K  
Sbjct: 457 EMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNG 516

Query: 364 KVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
           + ++A ++  EM+  G+ PD+S  +   E   T
Sbjct: 517 QGDDAENMVKEMVENGITPDDSTYISLIEGLTT 549



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 97/233 (41%), Gaps = 17/233 (7%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N    E  +  AL  F  M        + ++ SL+ AL+ K        L +     G+ 
Sbjct: 335 NGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIR 394

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V  N L+N       +  AF  +G + +K  +PD VT   L+RGLC+ G+  EA  L
Sbjct: 395 PDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKL 454

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             +      +  + P+++ Y ++I G    G V     +  +M  +G  P    YN+LI+
Sbjct: 455 IDEM----TKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQ 510

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
             C     +DA           E  V    E G+   PD  +Y S+I  L  +
Sbjct: 511 GLCKNGQGDDA-----------ENMVKEMVENGIT--PDDSTYISLIEGLTTE 550



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 15/128 (11%)

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE----------AAELFRTLHNTKF 402
           N L+ + + +     +L LY  M S+ + P ++  L           A  LF  +   + 
Sbjct: 92  NLLLTASAAVRPHATSLRLYSRMKSLSL-PISTASLHPLLSALPSAPAFALFADMFRLRL 150

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
            L  T FN ++  LC + +   A EL +++PR    PN VTY  +I G C  G ++ A D
Sbjct: 151 PLCTTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALD 206

Query: 463 LLPDMEEK 470
           ++ +M E+
Sbjct: 207 IMREMRER 214


>gi|302767258|ref|XP_002967049.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
 gi|300165040|gb|EFJ31648.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
          Length = 454

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 120/435 (27%), Positives = 191/435 (43%), Gaps = 50/435 (11%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ +S   L+   C+   +  A   +  + R+   PDV T   +I  LC   + + A   
Sbjct: 8   PNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAIEF 67

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F      +  P   P+V+ Y +++ GLCK+G V +   LF  M+G GI P    Y +LI 
Sbjct: 68  F------ETMPE--PDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLID 119

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
           V+C    +E A G     L+L              C P V SYCSIIN LCK+  VD+A 
Sbjct: 120 VFCKMCQFETAYG----LLQLMASRK---------CSPTVYSYCSIINGLCKNRKVDQAY 166

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           +LF +MK  G  PD V Y++LI G C+  R+ +A+ L   +      PD  ++  LI   
Sbjct: 167 QLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENSFQPDKITFTALIEGL 226

Query: 360 SKIEKVEEALSLYGEMISMGVRPD---NSCILEAAELFRTLHNTKFELD--------LTV 408
              ++++EA  L+  M   G  PD   ++ ++    + R L      +         + +
Sbjct: 227 CTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCIRRKLRPALSVVRNYPACPEAVIL 286

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL---------------CI 453
           +  +   L +      A  L +K+ R G  PNVVTYT    GL                +
Sbjct: 287 YTPIFRELGRRRGFDRAARLLQKMARRGVAPNVVTYTAFFKGLGDWKEGMRAYREFRRML 346

Query: 454 EGGIEK---AYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCH 510
           E GIE    AY++L D   K      A +++  M +  + P+ +T + L     +     
Sbjct: 347 EQGIEPDMVAYNVLVDGFCKANRLDMAEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGKVE 406

Query: 511 ECMNLLPSFLSRNQE 525
               LL + +SR ++
Sbjct: 407 AIGELLHTMVSRGRQ 421



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 113/429 (26%), Positives = 170/429 (39%), Gaps = 86/429 (20%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           L+PD  + N++++  CK   +S A          +  PDVVT   L+ GLC  G+  +A 
Sbjct: 41  LVPDVFTYNVVIDTLCKARRISRAI----EFFETMPEPDVVTYNTLLGGLCKNGRVAQAC 96

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            LF           + P+ + Y ++ID  CK         L   M  R   P  + Y S+
Sbjct: 97  SLFGSMEG----AGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSI 152

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           I   C              A +L EE           C PD ++Y ++I+ LC    + +
Sbjct: 153 INGLC-------KNRKVDQAYQLFEEMKLAG------CKPDRVTYNTLIHGLCVKQRLHE 199

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           AK+L   M      PD + +++LI+G C   RI +A  LF  +  +GC PD  ++  L++
Sbjct: 200 AKDLLTVMVENSFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVS 259

Query: 358 SYSKIEKVEEALS---------------------------------LYGEMISMGVRP-- 382
                 K+  ALS                                 L  +M   GV P  
Sbjct: 260 KLCIRRKLRPALSVVRNYPACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGVAPNV 319

Query: 383 -----------DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
                      D    + A   FR +     E D+  +N LVDG CK+ RL  A ++ + 
Sbjct: 320 VTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKANRLDMAEKMVRY 379

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAI-ELLHKMAKRYVK 490
           + + G  PN+VTY  ++   C +G +E                  AI ELLH M  R  +
Sbjct: 380 MDQSGLPPNIVTYNTLVGHHCRKGKVE------------------AIGELLHTMVSRGRQ 421

Query: 491 PDEITVSIL 499
           PD  T S L
Sbjct: 422 PDVATWSTL 430



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 126/259 (48%), Gaps = 41/259 (15%)

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
           C P+ LSYC ++ +LC+   +DKA     +M    ++PDV  Y+ +ID  C   RI  A 
Sbjct: 6   CKPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAI 65

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---------- 384
           + F ++      PD  +YNTL+    K  +V +A SL+G M   G+ P +          
Sbjct: 66  EFFETMPE----PDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVF 121

Query: 385 --SCILEAA-ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
              C  E A  L + + + K    +  +  +++GLCK+ ++  A++LF+++   G +P+ 
Sbjct: 122 CKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDR 181

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDMEE---------------------KIRECLKAIEL 480
           VTY  +I GLC++  + +A DLL  M E                     +I+E   A  L
Sbjct: 182 VTYNTLIHGLCVKQRLHEAKDLLTVMVENSFQPDKITFTALIEGLCTTDRIKE---AFVL 238

Query: 481 LHKMAKRYVKPDEITVSIL 499
              MAK+   PD +T ++L
Sbjct: 239 FQGMAKQGCAPDLVTHTVL 257



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 147/375 (39%), Gaps = 69/375 (18%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            ++ A+ FF  M    P P + ++N+LLG L           L   +   G+ P  V+  
Sbjct: 60  RISRAIEFFETM----PEPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYT 115

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ FCKM     A+  L  +  +  SP V +   +I GLC   K  +A  LF +    
Sbjct: 116 TLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLA 175

Query: 187 DCRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKV 215
            C+P+ +                               P+ I + ++I+GLC    + + 
Sbjct: 176 GCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENSFQPDKITFTALIEGLCTTDRIKEA 235

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA------------------------- 250
            VLF  M  +G  PD   +  L+   C       A                         
Sbjct: 236 FVLFQGMAKQGCAPDLVTHTVLVSKLCIRRKLRPALSVVRNYPACPEAVILYTPIFRELG 295

Query: 251 --KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
             +G   AA  L +    G         P+V++Y +    L       +A   F  M  +
Sbjct: 296 RRRGFDRAARLLQKMARRGVA-------PNVVTYTAFFKGLGDWKEGMRAYREFRRMLEQ 348

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           GI PD+V Y+ L+DG+C   R+D A K+   ++  G  P+  +YNTL+  + +  KVE  
Sbjct: 349 GIEPDMVAYNVLVDGFCKANRLDMAEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAI 408

Query: 369 LSLYGEMISMGVRPD 383
             L   M+S G +PD
Sbjct: 409 GELLHTMVSRGRQPD 423



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 96/237 (40%), Gaps = 44/237 (18%)

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           P+ + Y  L+   C  G+ID A      +  E  +PD  +YN +I++  K  ++  A+  
Sbjct: 8   PNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAI-- 65

Query: 372 YGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
                               E F T+     E D+  +N L+ GLCK+ R+  A  LF  
Sbjct: 66  --------------------EFFETMP----EPDVVTYNTLLGGLCKNGRVAQACSLFGS 101

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRE 473
           +   G  P+ VTYT +I   C     E AY LL  M                    K R+
Sbjct: 102 MEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRK 161

Query: 474 CLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
             +A +L  +M     KPD +T + L   L   +  HE  +LL   +  + +  K+T
Sbjct: 162 VDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENSFQPDKIT 218


>gi|147797511|emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
          Length = 814

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 150/323 (46%), Gaps = 39/323 (12%)

Query: 148 ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207
           +++++  P   +   +I GLC  GK   A  LF   V   C+ NV+     Y ++ID L 
Sbjct: 408 MVKEMVRPXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVL----LYNNLIDKLS 463

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
               + +  +L  +MKG G  P  F +NS   ++ C    ED  G      E+    V+G
Sbjct: 464 NSNRLEECYLLLKEMKGSGFRPTQFTHNS---IFGCLCRREDVTGALDMVREMR---VHG 517

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
           +        P +  Y  ++  LCK     +A     +M   G +PD+V YS+ IDG+  +
Sbjct: 518 H-------EPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKI 570

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
             +D A ++F  I + G  PD  +YNTLIN + K+++V EA  +  EM++ G+ P     
Sbjct: 571 KAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVP----- 625

Query: 388 LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
                             +  +N L+DG CK+  +  A+    ++     EPNV+TYT +
Sbjct: 626 -----------------SVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTL 668

Query: 448 ICGLCIEGGIEKAYDLLPDMEEK 470
           I GLC  G  + A  L  +M  K
Sbjct: 669 IDGLCNAGRPDDAIHLWNEMRGK 691



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 144/313 (46%), Gaps = 19/313 (6%)

Query: 63  SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF 122
           +G+++L  AL  F  M+ +     +  +N+L+  L+          L + +   G  P  
Sbjct: 430 TGKLDL--ALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKGSGFRPTQ 487

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
            + N +  C C+   V+ A   +  +      P +     L++ LC + +  EA     +
Sbjct: 488 FTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAE 547

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
            V    R   +P+++ Y++ IDG  K   V++   +F D+  RG  PD   YN+LI  +C
Sbjct: 548 MV----REGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFC 603

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
                       S A ++ +E V      G++  P V++Y  +I+  CK+  +D+A    
Sbjct: 604 -------KVKRVSEAHDILDEMVAK----GLV--PSVVTYNLLIDGWCKNGDIDQAFHCL 650

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
             M  +   P+V+ Y++LIDG C  GR DDA  L+  +  +GC P+  S+  LI+   K 
Sbjct: 651 SRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKC 710

Query: 363 EKVEEALSLYGEM 375
              + AL  + EM
Sbjct: 711 GWPDAALLYFREM 723



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 97/417 (23%), Positives = 166/417 (39%), Gaps = 59/417 (14%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L ER+  +G+  +  +  +L++ F +   V  A     ++ +  F+PDV     LI GLC
Sbjct: 250 LIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLC 309

Query: 169 MQGKFTEASGLFTKFVAFDCRPNV------IPN-----------------------VICY 199
            + +  +A  L ++       P++      IP                        ++ Y
Sbjct: 310 AKKEIEKALHLLSEMKELGIDPDIQILSKLIPYCSEEVDIYRLIEERLEDLDTEAMLLLY 369

Query: 200 ASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV----------YCCAVNWED 249
            S+++GL     V+K   L   M G   Y D F  N    V          +   ++   
Sbjct: 370 NSVLNGLVNGKSVDKAYYLLXAMTGDN-YTDNFEVNKFFMVKEMVRPXTTSFSIVIDGLC 428

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
             G    AL L  + V       V C  +VL Y ++I+ L     +++   L  +MK  G
Sbjct: 429 NTGKLDLALSLFRDMVR------VGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKGSG 482

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
             P    ++S+    C    +  A  +   +   G  P    Y  L+    K ++  EA 
Sbjct: 483 FRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAEAC 542

Query: 370 SLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           +   EM+  G  PD                + +A E+FR +    +  D+  +N L++G 
Sbjct: 543 NFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGF 602

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
           CK  R+  A ++  ++   G  P+VVTY ++I G C  G I++A+  L  M  K RE
Sbjct: 603 CKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKERE 659



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 117/490 (23%), Positives = 189/490 (38%), Gaps = 50/490 (10%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           SKSG ++L +       M      P   +  S+L A    + +   + +   +   G + 
Sbjct: 170 SKSGSIDLVEMR--LKEMCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGWVD 227

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
             V L+IL+  F K   V  AF  + R+       +  T   LI G   Q +  +A  LF
Sbjct: 228 GHV-LSILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLF 286

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            K      +    P+V  Y ++I GLC    + K   L  +MK  GI PD  + + LI  
Sbjct: 287 KKMQ----KSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIP- 341

Query: 241 YCCA-------VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDV 293
           YC         +       +T A L L+   +NG     ++    V     ++ ++  D 
Sbjct: 342 YCSEEVDIYRLIEERLEDLDTEAMLLLYNSVLNG-----LVNGKSVDKAYYLLXAMTGDN 396

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353
             D  +     M    + P    +S +IDG C  G++D A  LF  +   GC  +   YN
Sbjct: 397 YTDNFEVNKFFMVKEMVRPXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYN 456

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRP----DNSC---------ILEAAELFRTLHNT 400
            LI+  S   ++EE   L  EM   G RP     NS          +  A ++ R +   
Sbjct: 457 NLIDKLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVH 516

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
             E  +  +  LV  LCK  R   A     ++ R G  P++V Y+  I G          
Sbjct: 517 GHEPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFV-------- 568

Query: 461 YDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
                    KI+   +A+E+   +  R   PD +  + L     K +   E  ++L   +
Sbjct: 569 ---------KIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMV 619

Query: 521 SRNQEESKLT 530
           ++    S +T
Sbjct: 620 AKGLVPSVVT 629



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 128/292 (43%), Gaps = 41/292 (14%)

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
           +  + K G ++ V +   +M   G  PD +   S+++ YC +  ++        AL +  
Sbjct: 166 LGAISKSGSIDLVEMRLKEMCDSGWEPDKYTLTSVLQAYCNSRKFD-------KALSVFN 218

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
           E + G G +       VLS   +  S C +V  DKA EL   M+  GI  +   +  LI 
Sbjct: 219 E-IYGRGWV----DGHVLSILVLTFSKCGEV--DKAFELIERMEDLGIRLNEKTFCVLIH 271

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
           G+    R+D A +LF  ++  G  PD S Y+ LI      +++E+AL L  EM  +G+ P
Sbjct: 272 GFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDP 331

Query: 383 DNSCI-------LEAAELFRTLHNTKFELD----LTVFNCLVDGLCKSWRLRSAWELFKK 431
           D   +        E  +++R +     +LD    L ++N +++GL     +  A+ L   
Sbjct: 332 DIQILSKLIPYCSEEVDIYRLIEERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLXA 391

Query: 432 LP----------------RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +                 +    P   +++++I GLC  G ++ A  L  DM
Sbjct: 392 MTGDNYTDNFEVNKFFMVKEMVRPXTTSFSIVIDGLCNTGKLDLALSLFRDM 443


>gi|413916119|gb|AFW56051.1| hypothetical protein ZEAMMB73_517553 [Zea mays]
          Length = 663

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 129/464 (27%), Positives = 207/464 (44%), Gaps = 57/464 (12%)

Query: 72  LCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131
           L  F  M      P +   N +L  L     + +   +   +  +G+ P  V+ N L++ 
Sbjct: 181 LSAFREMASHGVAPDVKDCNKVLRVLRDAARWDDMSAVHAEMLQLGIEPSIVTYNTLLDS 240

Query: 132 FCKMIGVSDAFVALGRILRKVFS---PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           F K  G  D    L + +    S   P+ VT   +I GL  +G   EA+ L  +      
Sbjct: 241 FSKE-GRKDKIDMLLKEMEARGSSCLPNDVTYNVVIAGLARKGYLEEAAELVEEM----- 294

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
           R +   +   Y  +I GL   GFV KV  L L+M+  GI P    YN++I     +   E
Sbjct: 295 RLSKKASSFTYNPLITGLLARGFVKKVDDLQLEMENEGIMPTVVTYNAMIHGLLQSGQIE 354

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
            A+           +FV     +G++  PDV++Y S++N  CK     +A  LF D++  
Sbjct: 355 AAQA----------KFVEMRA-MGLL--PDVITYNSLLNGYCKAGNQKEALLLFGDLRRA 401

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G+ P V+ Y+ LIDGYC +G +++AR+L   +  +GC+PD  +Y  L+     +  +   
Sbjct: 402 GLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMT 461

Query: 369 LSLYGEMISMGVRPD----NSCILEAAELFRTLHNTKFEL-----------DLTVFNCLV 413
              + EM+S G+RPD    N+ I   AE+     +  F+L           D   +N L+
Sbjct: 462 REFFDEMLSKGLRPDCFAYNTRI--CAEITLGDISKSFQLREVIMLEGISSDTVTYNILI 519

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE---- 469
           DGLCK+  L+ A EL  ++   G +P+ +TYT +I   C  G + +A     DM      
Sbjct: 520 DGLCKTGNLKDAEELMMQMISNGLQPDCITYTCLIHAHCERGFLREARKFFNDMISDGLP 579

Query: 470 --------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                         +      A     KM +  V+P+EIT ++L
Sbjct: 580 PSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVL 623



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 155/338 (45%), Gaps = 39/338 (11%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +  +GLLPD ++ N L+N +CK     +A +  G + R   +P V+T   LI G C  G 
Sbjct: 363 MRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGD 422

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
             EA  L  + V   C    +P+V  Y  ++ G      +   R  F +M  +G+ PD F
Sbjct: 423 LEEARRLKEEMVEQGC----LPDVYTYTILMKGSHNVCSLAMTREFFDEMLSKGLRPDCF 478

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            YN+ I    CA   E   G+ S + +L E  +            D ++Y  +I+ LCK 
Sbjct: 479 AYNTRI----CA---EITLGDISKSFQLREVIMLEG------ISSDTVTYNILIDGLCKT 525

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             +  A+EL + M S G+ PD + Y+ LI  +C  G + +ARK F  + S+G  P   +Y
Sbjct: 526 GNLKDAEELMMQMISNGLQPDCITYTCLIHAHCERGFLREARKFFNDMISDGLPPSAVTY 585

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCL 412
             +I++Y +   +  A   + +M+  GV P+                         +N L
Sbjct: 586 TVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNE----------------------ITYNVL 623

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
           +  LC+  R + A+  F ++   G  PN  TYT++I G
Sbjct: 624 IHALCRMGRTQLAYRHFYEMLERGLVPNKYTYTLLIDG 661



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 153/329 (46%), Gaps = 30/329 (9%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
           P VVT   +I GL   G+   A   F +  A      ++P+VI Y S+++G CK G   +
Sbjct: 335 PTVVTYNAMIHGLLQSGQIEAAQAKFVEMRAM----GLLPDVITYNSLLNGYCKAGNQKE 390

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
             +LF D++  G+ P    YN LI  YC   + E+A+        L EE V         
Sbjct: 391 ALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEAR-------RLKEEMVEQG------ 437

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
           C PDV +Y  ++        +   +E F +M S+G+ PD   Y++ I     +G I  + 
Sbjct: 438 CLPDVYTYTILMKGSHNVCSLAMTREFFDEMLSKGLRPDCFAYNTRICAEITLGDISKSF 497

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCIL--- 388
           +L   I  EG   DT +YN LI+   K   +++A  L  +MIS G++PD    +C++   
Sbjct: 498 QLREVIMLEGISSDTVTYNILIDGLCKTGNLKDAEELMMQMISNGLQPDCITYTCLIHAH 557

Query: 389 -------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
                  EA + F  + +         +  ++   C+   L SA+  F+K+   G EPN 
Sbjct: 558 CERGFLREARKFFNDMISDGLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNE 617

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           +TY V+I  LC  G  + AY    +M E+
Sbjct: 618 ITYNVLIHALCRMGRTQLAYRHFYEMLER 646


>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
          Length = 1351

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 124/496 (25%), Positives = 223/496 (44%), Gaps = 84/496 (16%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           +AL  +  M+     P + +++ L+ A   ++     + L   +   G+ P+  S  I +
Sbjct: 257 EALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICI 316

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
               +     +A+  L  +  +   PDV+T   LI+ LC  G+ ++A  +F K    D +
Sbjct: 317 RVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQK 376

Query: 190 PNVIP-------------------------------NVICYASIIDGLCKDGFVNKVRVL 218
           P+ +                                NV+ Y ++ID LC+ G V +   +
Sbjct: 377 PDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEM 436

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD 278
           F +MK +GI P+ + YNSLI  +  A  + D       ALEL  ++++ +G       P+
Sbjct: 437 FDEMKQKGIVPEQYSYNSLISGFLKADRFGD-------ALELF-KYMDIHGP-----KPN 483

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
             ++   IN   K     KA + +  MKS+GI+PDVV  ++++ G    GR+  A+++F 
Sbjct: 484 GYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFH 543

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398
            +++ G  PDT +Y  +I   SK  K +EA+ ++ +MI      +N+C+           
Sbjct: 544 ELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMI------ENNCV----------- 586

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
                 D+ V N L+D L K+ R   AW++F +L     EP   TY  ++ GL  EG ++
Sbjct: 587 -----PDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGKVK 641

Query: 459 KAYDLLPDMEEK-----------IRECL-------KAIELLHKMAKRYVKPDEITVSILE 500
           +   LL +M              I +CL        A+++L+ M  +   PD  + + + 
Sbjct: 642 EVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVI 701

Query: 501 ELLNKDENCHECMNLL 516
             L K+E  +E  ++ 
Sbjct: 702 YGLVKEERYNEAFSIF 717



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 124/458 (27%), Positives = 200/458 (43%), Gaps = 69/458 (15%)

Query: 62   KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
            K+G V  NDAL     M      P + S+N+++  L  ++ Y     +  ++  + L+PD
Sbjct: 671  KNGAV--NDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKV-LIPD 727

Query: 122  FVSLNILMNCFCKMIGVSDA-------FVALGR-------------ILRKV-------FS 154
            + +L  ++  F K+  + +A       F+  G              IL+K        F+
Sbjct: 728  YATLCTILPSFVKIGLMKEALHIIKEYFLQPGSKTDRSSCHSLMEGILKKAGTEKSIEFA 787

Query: 155  PDVVTLGC---------LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDG 205
              + + G          LI+ LC Q K  EA  L  KF +F     V      Y S+I G
Sbjct: 788  EIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSF----GVSLKTGSYNSLICG 843

Query: 206  LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
            L  +  ++    LF +MK  G  PD F YN L+     ++  E+        L++ EE  
Sbjct: 844  LVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEM-------LKVQEEMH 896

Query: 266  NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
                E         ++Y +II+ L K   +++A +L+ ++ S+G  P    Y  L+DG  
Sbjct: 897  RKGYE------STYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLL 950

Query: 326  LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN- 384
              GRI+DA  LF  +   GC  + + YN L+N +      E+   L+ +M+  G+ PD  
Sbjct: 951  KAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIK 1010

Query: 385  ------SCILEAAEL------FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
                    + +A +L      FR L     E DL  +N L+DGL KS RL  A  LF ++
Sbjct: 1011 SYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEM 1070

Query: 433  PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
             + G  PN+ TY  +I  L   G   +A  +  ++  K
Sbjct: 1071 QKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTK 1108



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 160/354 (45%), Gaps = 24/354 (6%)

Query: 74   FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
             F  M  +   P   ++N LL A+         + + E ++  G    +V+ N +++   
Sbjct: 856  LFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLV 915

Query: 134  KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
            K   +  A      ++ + FSP   T G L+ GL   G+  +A  LF + + + C+ N  
Sbjct: 916  KSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCT 975

Query: 194  PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
                 Y  +++G    G   KV  LF DM  +GI PD   Y  +I   C A    D    
Sbjct: 976  ----IYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTY 1031

Query: 254  TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
                LE+  E             PD+++Y  +I+ L K   +++A  LF +M+ +GI+P+
Sbjct: 1032 FRQLLEMGLE-------------PDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPN 1078

Query: 314  VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
            +  Y+SLI      G+  +A K++  + ++G  P+  +YN LI  YS     + A + YG
Sbjct: 1079 LYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYG 1138

Query: 374  EMISMGVRPDNSC--ILEAAELFRTLHNTKFELDLTVFNCLVDGL---CKSWRL 422
             MI  G  P++S   I E  + F    +  +E+ +T  N   +G+    ++W+ 
Sbjct: 1139 RMIVGGCLPNSSTCHIHELMKTFLKGDSDSYEIIVTFIN--AEGMLAYSRAWKF 1190



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 120/483 (24%), Positives = 201/483 (41%), Gaps = 56/483 (11%)

Query: 69   NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
            ++A   F  +  M   P   ++N+LL  L  +      + L E +      P+ ++ N +
Sbjct: 606  DEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTI 665

Query: 129  MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
            ++C CK   V+DA   L  +  K   PD+ +   +I GL  + ++ EA  +F +      
Sbjct: 666  LDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQM----- 720

Query: 189  RPNVIPNVICYASIIDGLCKDGFVNK----VRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
            +  +IP+     +I+    K G + +    ++  FL     G   D    +SL+      
Sbjct: 721  KKVLIPDYATLCTILPSFVKIGLMKEALHIIKEYFLQ---PGSKTDRSSCHSLMEGIL-- 775

Query: 245  VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                  K  T  ++E  E   +    L      D    C +I  LCK     +A EL   
Sbjct: 776  -----KKAGTEKSIEFAEIIASSGITL------DDFFLCPLIKHLCKQKKALEAHELVKK 824

Query: 305  MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
             KS G+      Y+SLI G      ID A  LF  ++  GC PD  +YN L+++  K  +
Sbjct: 825  FKSFGVSLKTGSYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMR 884

Query: 365  VEEALSLYGEMISMGVRPD----NSCIL---------EAAELFRTLHNTKFELDLTVFNC 411
            +EE L +  EM   G        N+ I          +A +L+  L +  F      +  
Sbjct: 885  IEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGP 944

Query: 412  LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK- 470
            L+DGL K+ R+  A  LF ++  YG + N   Y +++ G  I G  EK   L  DM ++ 
Sbjct: 945  LLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQG 1004

Query: 471  -----------IRECLKAIEL------LHKMAKRYVKPDEITVSILEELLNKDENCHECM 513
                       I    KA +L        ++ +  ++PD IT ++L + L K +   E +
Sbjct: 1005 INPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAV 1064

Query: 514  NLL 516
            +L 
Sbjct: 1065 SLF 1067



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 155/359 (43%), Gaps = 47/359 (13%)

Query: 89   SFNSLLGALAGKKYYVNFICLSERL----NTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
            S+NSL+  L  +    N I ++E L      +G  PD  + N+L++   K + + +    
Sbjct: 836  SYNSLICGLVDE----NLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKV 891

Query: 145  LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
               + RK +    VT   +I GL    +  +A  L+   ++        P    Y  ++D
Sbjct: 892  QEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMS----QGFSPTPCTYGPLLD 947

Query: 205  GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
            GL K G +     LF +M   G   +  +YN L+       N     GNT     L ++ 
Sbjct: 948  GLLKAGRIEDAENLFNEMLEYGCKANCTIYNILL-------NGHRIAGNTEKVCHLFQDM 1000

Query: 265  VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
            V+         +PD+ SY  II++LCK   ++     F  +   G+ PD++ Y+ LIDG 
Sbjct: 1001 VDQG------INPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGL 1054

Query: 325  CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
                R+++A  LF  ++ +G +P+  +YN+LI    K  K  EA  +Y E+++ G +P  
Sbjct: 1055 GKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKP-- 1112

Query: 385  SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                                ++  +N L+ G   S    SA+  + ++   G  PN  T
Sbjct: 1113 --------------------NVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSST 1151



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 118/509 (23%), Positives = 196/509 (38%), Gaps = 82/509 (16%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           +AL  F+ M      P   S+NSL+        + + + L + ++  G  P+  +  + +
Sbjct: 432 EALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGPKPNGYTHVLFI 491

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           N + K      A      +  K   PDVV    ++ GL   G+   A  +F +  A    
Sbjct: 492 NYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAM--- 548

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
             V P+ I Y  +I    K    ++   +F DM      PD  V NSLI     A     
Sbjct: 549 -GVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKA----- 602

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
             G    A ++  +    N E      P   +Y +++  L ++  V +   L  +M    
Sbjct: 603 --GRGDEAWQIFYQLKEMNLE------PTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSN 654

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
             P+++ Y++++D  C  G ++DA  +  S+ ++GCIPD SSYNT+I    K E+  EA 
Sbjct: 655 YPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAF 714

Query: 370 SLYGEM-----------------------------------ISMGVRPDNSC-------I 387
           S++ +M                                   +  G + D S        I
Sbjct: 715 SIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKEYFLQPGSKTDRSSCHSLMEGI 774

Query: 388 LEAA------ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
           L+ A      E    + ++   LD      L+  LCK  +   A EL KK   +G     
Sbjct: 775 LKKAGTEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKT 834

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEE 501
            +Y  +ICGL  E  I+ A  L  +M+E    C                PDE T ++L +
Sbjct: 835 GSYNSLICGLVDENLIDIAEGLFAEMKE--LGC---------------GPDEFTYNLLLD 877

Query: 502 LLNKDENCHECMNLLPSFLSRNQEESKLT 530
            + K     E + +      +  E + +T
Sbjct: 878 AMGKSMRIEEMLKVQEEMHRKGYESTYVT 906



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 94/214 (43%), Gaps = 15/214 (7%)

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
           E G++   +  +Y  ++  L K     +A E++  M   G++P V  YS L+  +     
Sbjct: 232 EAGIVL--NAYTYNGLVYFLVKSGFDREALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRD 289

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP------- 382
           ++    L   +E+ G  P+  SY   I    +  + +EA  +  EM + G +P       
Sbjct: 290 VETVLWLLREMEAHGVKPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTV 349

Query: 383 ------DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
                 D   I +A ++F  +  +  + D   +  L+D    +   +S  E++  +   G
Sbjct: 350 LIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADG 409

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
              NVV YT +I  LC  G + +A ++  +M++K
Sbjct: 410 YNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQK 443



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 56/125 (44%)

Query: 67   ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            +LND L +F  ++ M   P + ++N L+  L   K     + L   +   G++P+  + N
Sbjct: 1024 QLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYN 1083

Query: 127  ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
             L+    K    ++A      +L K + P+V T   LIRG  + G    A   + + +  
Sbjct: 1084 SLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVG 1143

Query: 187  DCRPN 191
             C PN
Sbjct: 1144 GCLPN 1148



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 96/228 (42%), Gaps = 31/228 (13%)

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           V    E+F  M+ + +  +V  ++++  G  + G +  A      ++  G + +  +YN 
Sbjct: 185 VGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNG 244

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPD--NSCILEAA-----------ELFRTLHNTK 401
           L+    K     EAL +Y  M+  GV P      +L  A            L R +    
Sbjct: 245 LVYFLVKSGFDREALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHG 304

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
            + ++  +   +  L ++ R   A+ +  ++   G +P+V+T+TV+I  LC  G I  A 
Sbjct: 305 VKPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAK 364

Query: 462 DLLPDMEEKIRECLKAIELLHKMAKRYVKPDEIT-VSILEELLNKDEN 508
           D                 +  KM K   KPD +T +++L++  +  E+
Sbjct: 365 D-----------------VFWKMKKSDQKPDRVTYITLLDKFADNGES 395


>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 167/337 (49%), Gaps = 44/337 (13%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           PNV  +  +++ LCK+G V   +++F +++  G+ P A  +N+LI  YC + N E+    
Sbjct: 230 PNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEG--- 286

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
                 + EEF            PDV +Y ++I+ LCK+  ++ A  LF +M  RG++P+
Sbjct: 287 -FRLKMVMEEFR---------VFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPN 336

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
            V +++LI+G C  GR+D A +++  + ++G   D   YNTLI+   K     EA    G
Sbjct: 337 DVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVG 396

Query: 374 EMISMGVRPDN---SCILE----------AAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           EM   G+ PD    + +L+          A E+ + +     +LD   F  ++ GLC+  
Sbjct: 397 EMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDG 456

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE----------- 469
           ++  A    +++ R G +P+  TYT+++ G C +G ++  + LL +M+            
Sbjct: 457 KIVDAERTLREMLRAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYN 516

Query: 470 -------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                  K  +   A  LL+ M    V PD+IT +IL
Sbjct: 517 VLMNGLCKQGQVKNADMLLNAMLNLGVVPDDITYNIL 553



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 178/384 (46%), Gaps = 33/384 (8%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  P+  + N+LMN  CK   V DA +    I +    P  V+   LI G C  G   E 
Sbjct: 227 GYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEE- 285

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
            G   K V  + R  V P+V  Y+++IDGLCK+  +     LF +M  RG+ P+   + +
Sbjct: 286 -GFRLKMVMEEFR--VFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTT 342

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEE-FVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           LI   C         G    ALE++++ F  G          D++ Y ++I+ LCK    
Sbjct: 343 LINGQC-------KNGRVDLALEIYQQMFTKG-------LKADLVLYNTLIDGLCKGGYF 388

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
            +A++   +M  RG+IPD   Y++L+DG C  G ++ A ++   +  EG   D  ++  +
Sbjct: 389 REARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAI 448

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL--------- 406
           I+   +  K+ +A     EM+  G++PD+       + F    + K    L         
Sbjct: 449 ISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGH 508

Query: 407 ----TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
                 +N L++GLCK  ++++A  L   +   G  P+ +TY +++ G C  G +    +
Sbjct: 509 IPGVITYNVLMNGLCKQGQVKNADMLLNAMLNLGVVPDDITYNILLQGHCKHGKLGDFQN 568

Query: 463 LLPDMEEKIRECLKAIELLHKMAK 486
           +  +M   + +      LLH+++K
Sbjct: 569 VKTEM-GLVSDYASYRSLLHELSK 591



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 174/389 (44%), Gaps = 78/389 (20%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           AL F+  ++     P + +FN L+  L  +    +   + + +   GL P  VS N L+N
Sbjct: 216 ALEFYLEILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLIN 275

Query: 131 CFCKMIGVSDAFVALGRILR--KVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
            +CK   + + F  L  ++   +VF PDV T   LI GLC + +  +A+ LF +     C
Sbjct: 276 GYCKSGNLEEGF-RLKMVMEEFRVF-PDVFTYSALIDGLCKECQLEDANHLFKEM----C 329

Query: 189 RPNVIPN-----------------------------------VICYASIIDGLCKDGFVN 213
              ++PN                                   ++ Y ++IDGLCK G+  
Sbjct: 330 DRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFR 389

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
           + R    +M  RG+ PD F Y +L+   C        +G+   ALE+ +E V    +L  
Sbjct: 390 EARKFVGEMTKRGLIPDKFTYTTLLDGSC-------KEGDLELALEMRKEMVKEGIQL-- 440

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
               D +++ +II+ LC+D  +  A+    +M   G+ PD   Y+ ++DG+C  G +   
Sbjct: 441 ----DNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCKKGDVKMG 496

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAEL 393
            KL   ++S+G IP   +YN L+N   K  +V+ A  L   M+++GV PD          
Sbjct: 497 FKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKNADMLLNAMLNLGVVPD---------- 546

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRL 422
                      D+T +N L+ G CK  +L
Sbjct: 547 -----------DIT-YNILLQGHCKHGKL 563


>gi|242095336|ref|XP_002438158.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
 gi|241916381|gb|EER89525.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
          Length = 607

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 131/522 (25%), Positives = 222/522 (42%), Gaps = 89/522 (17%)

Query: 70  DALCFF-NYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           DA  F  + +    P P + +FNSLL AL           L   +    + PD V+  IL
Sbjct: 113 DAASFLRDSLAAGAPAPDVSTFNSLLSALGRAGNLRGMTELFTSMREASVKPDIVTYGIL 172

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSP------DVVTLGCLIRGLCMQGKFTEASGLFTK 182
           +N  CK   V DA     ++L ++ SP      D+V L  ++ GLC  G+  +A      
Sbjct: 173 LNRLCKAGLVGDAL----KVLDRMSSPGSDVCADIVILNTVVDGLCKIGRLQDA------ 222

Query: 183 FVAFDCRPNVI----PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
            V  D R   +    PN + Y  + D  C+ G ++    +   M+  G+ P+    N+++
Sbjct: 223 IVFVDERMRQVHGCAPNTVTYNCLADACCRVGDIDMACQIVERMEKEGVTPNVITMNTIV 282

Query: 239 RVYCCAVNWEDAKGNTSAALELHEE----FVNGNGELGVICHPDVLSYCSIINSL--CKD 292
              C         G   AAL+   E    ++   G        + ++Y +++++   C +
Sbjct: 283 GGLC-------RVGRVGAALDFFREKRTTWLEARG--------NAVTYSTLVSAFLHCNN 327

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
           V +  A ELF +M  +G  PD V+Y ++I G    GR+ DA  +  S++  G   D  +Y
Sbjct: 328 VAL--AMELFHEMADQGYPPDAVMYFTMISGLTQAGRLVDACNIAASMKKAGFKLDRKAY 385

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDN-------SCILEAA------ELFRTLHN 399
           N LI  + + +++ EA  L+ EM   G++PD        SC+ +A       EL   + +
Sbjct: 386 NILIGGFCRKKRLHEAHQLFEEMKGAGLQPDVYTYNTLLSCLCKAGDFSAVDELLGNMID 445

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
              +  +  F  LV G CK+ +   A ++F+ +     +PN V Y  +I  LC    ++ 
Sbjct: 446 DGCQPSVVTFGTLVHGYCKAGKTDEALKIFRSMGEARIQPNTVIYNTLIDFLCKSREVDV 505

Query: 460 AYDLLPDMEEK-----------IRECL-------KAIELLHKMAKRYVKPDEITVSILEE 501
           A  L  +M E            + + L       KA EL+ +M +    PD +T+ +L E
Sbjct: 506 AIKLFDEMRENNVPANVTTYNALLKGLQDKNMPEKAFELMDQMKEERCTPDYVTMDVLME 565

Query: 502 LL--------------NKDENCHECMNLLPSFLSRNQEESKL 529
            L               +DE     + + P F+    E  +L
Sbjct: 566 WLPEIGETERLKCFMEQRDEKGGAKLTMKPPFVGTRSEYRQL 607


>gi|356554513|ref|XP_003545590.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g25630-like [Glycine max]
          Length = 632

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 119/496 (23%), Positives = 216/496 (43%), Gaps = 37/496 (7%)

Query: 29  SLNSENEPSS---LHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTP 85
           + NS ++PS    +  N    V  +TK++  L ++ K  E     A+  F  +I     P
Sbjct: 51  ATNSGSQPSCTFCMGKNDCQIVRSRTKVMNILIKSGKPQE-----AIVIFQNLIEGGHQP 105

Query: 86  FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVAL 145
            + ++ +LL AL  +KY+     +   +    + PD +  N L+N F +   + DA   +
Sbjct: 106 SLATYTTLLNALTTQKYFKPIHSIVSLVEEKQMKPDSIFFNALINAFAESGNMEDAKKVV 165

Query: 146 GRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDG 205
            ++      P   T   LI+G  + GK  E+  L           NV PN+  Y  +I  
Sbjct: 166 QKMKESGLKPSACTYNTLIKGYGIAGKPDESMKLLD---LMSTEGNVKPNLKTYNMLIRA 222

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
           LCK   +++   +   M   G+ PD   +N++   Y  A N + A+   +  LE+    +
Sbjct: 223 LCKMENISEAWNVVYKMTASGMQPDVVTFNTIATAY--AQNGKTAQAE-AMILEMQRNSL 279

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
             N     I          II+  C++  V +A      MK  G+ P+++V +SL++G+ 
Sbjct: 280 KPNERTCTI----------IISGYCREGKVQEALRFVYRMKDLGMQPNLIVLNSLVNGFV 329

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
            M   D   ++   +E     PD  +Y+T++N++S+   +E+   +Y  M+  GV+PD  
Sbjct: 330 DMMDRDGVDEVLKLMEEFQIRPDVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDAH 389

Query: 386 C-------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
                         + +A E+   +  +    ++ +F  ++ G C   R+ +A  +F K+
Sbjct: 390 AYSILAKGYVRAQEMEKAEEMLTVMTKSGVHPNVVIFTTVISGWCSVGRMDNAMRVFDKM 449

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPD 492
             +G  PN+ T+  +I G        KA  +L  MEE   +  K+  LL   A R+    
Sbjct: 450 GEFGVSPNLKTFETLIWGYAEAKQPWKAEGMLQIMEEFHVQPKKSTILLVAEAWRFAGFK 509

Query: 493 EITVSILEELLNKDEN 508
           E   ++L  +  K  N
Sbjct: 510 ERAKTLLRTVKAKMAN 525


>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Glycine max]
          Length = 1024

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/396 (26%), Positives = 183/396 (46%), Gaps = 61/396 (15%)

Query: 75  FNYMIHMQPTPFMP---SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131
           F  +  M    F+P   +++ ++G L           L E +   G++P   +  IL++ 
Sbjct: 438 FEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDS 497

Query: 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
           FCK   +  A      +LR   +P+VVT   LI       K  +A+ LF   +    +PN
Sbjct: 498 FCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPN 557

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
           V+     Y ++IDG CK G ++K   ++  M+G     D  +Y  L          +D  
Sbjct: 558 VVT----YTALIDGHCKAGQIDKACQIYARMQGDIESSDIDMYFKL----------DDND 603

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
             T                      P++++Y ++++ LCK   V++A EL   M   G  
Sbjct: 604 CET----------------------PNIITYGALVDGLCKANRVEEAHELLDTMSVNGCE 641

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           P+ +VY +LIDG+C  G++++A+++FV +   G  P+  +Y++LINS  K ++++  L +
Sbjct: 642 PNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKV 701

Query: 372 YGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
             +M+      +NSC                  ++ ++  ++DGLCK  +   A+ L  K
Sbjct: 702 LSKML------ENSCTP----------------NVVIYTDMIDGLCKVGKTEEAYRLMLK 739

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +   G  PNV+TYT MI G    G IE+  +L  DM
Sbjct: 740 MEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDM 775



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 125/476 (26%), Positives = 189/476 (39%), Gaps = 103/476 (21%)

Query: 89  SFNSLLGA-LAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGR 147
           ++N+L+   L   K    F+   E  N+ G   D  +L       CK     DA   L  
Sbjct: 207 TYNALIQVFLRADKLDTAFLVHREMSNS-GFRMDGCTLGCFAYSLCKAGRCGDA---LSL 262

Query: 148 ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI-------------- 193
           + ++ F PD V    ++ GLC    F EA  +  +  +  C PNV+              
Sbjct: 263 LEKEEFVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQ 322

Query: 194 -----------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
                            PN   + S++   CK    +    LF  M   G  P   +YN 
Sbjct: 323 LGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNI 382

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH-------------------- 276
            I   C   + E+  G  S  LEL E+  +   +LGV+ +                    
Sbjct: 383 FIGSIC---SNEELPG--SDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKA 437

Query: 277 -------------PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
                        PD  +Y  +I  LC    V+KA  LF +MK  GI+P V  Y+ LID 
Sbjct: 438 FEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDS 497

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP- 382
           +C  G I  AR  F  +  + C P+  +Y +LI++Y K  KV +A  L+  M+  G +P 
Sbjct: 498 FCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPN 557

Query: 383 --------DNSC----ILEAAELFRTLH--------NTKFELD--------LTVFNCLVD 414
                   D  C    I +A +++  +         +  F+LD        +  +  LVD
Sbjct: 558 VVTYTALIDGHCKAGQIDKACQIYARMQGDIESSDIDMYFKLDDNDCETPNIITYGALVD 617

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           GLCK+ R+  A EL   +   G EPN + Y  +I G C  G +E A ++   M E+
Sbjct: 618 GLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSER 673



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 113/461 (24%), Positives = 197/461 (42%), Gaps = 72/461 (15%)

Query: 113 LNTIGLLPDF------VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166
           L  +G L DF       + N L+  F +   +  AF+    +    F  D  TLGC    
Sbjct: 190 LEELGRLKDFGYKASPTTYNALIQVFLRADKLDTAFLVHREMSNSGFRMDGCTLGCFAYS 249

Query: 167 LCMQGKFTEASGL------------FTKFVAFDCRPNV----------------IPNVIC 198
           LC  G+  +A  L            + + V+  C  ++                IPNV+ 
Sbjct: 250 LCKAGRCGDALSLLEKEEFVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVT 309

Query: 199 YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL 258
           Y  ++ G    G + + + +   M   G YP+  ++NSL+  YC + ++       S A 
Sbjct: 310 YRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDY-------SYAY 362

Query: 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDV------LVDKAKELFLDMKSRGIIP 312
           +L ++ +         C P  L Y   I S+C +       L++ A++ + +M   G++ 
Sbjct: 363 KLFKKMIKCG------CQPGYLLYNIFIGSICSNEELPGSDLLELAEKAYSEMLDLGVVL 416

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
           + V  S+     C  G+ D A ++   + S+G +PD S+Y+ +I       KVE+A  L+
Sbjct: 417 NKVNVSNFARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLF 476

Query: 373 GEMISMGVRP---------DNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            EM   G+ P         D+ C    I +A   F  +       ++  +  L+    K+
Sbjct: 477 EEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKA 536

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIE 479
            ++  A +LF+ +   G +PNVVTYT +I G C  G I+KA  +   M+  I      I+
Sbjct: 537 RKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQIYARMQGDIES--SDID 594

Query: 480 LLHKMAKRYVK-PDEITVSILEELL---NKDENCHECMNLL 516
           +  K+     + P+ IT   L + L   N+ E  HE ++ +
Sbjct: 595 MYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELLDTM 635



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/408 (23%), Positives = 173/408 (42%), Gaps = 53/408 (12%)

Query: 63  SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF 122
            G++E +D   +F    +   TP + ++ +L+  L           L + ++  G  P+ 
Sbjct: 585 QGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQ 644

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           +  + L++ FCK   + +A     ++  + + P++ T   LI  L  + +      + +K
Sbjct: 645 IVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSK 704

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
            +   C     PNV+ Y  +IDGLCK G   +   L L M+  G YP+   Y ++I  + 
Sbjct: 705 MLENSC----TPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGF- 759

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
                    G     LEL+ +  +        C P+ ++Y  +IN  C   L+D+A  L 
Sbjct: 760 ------GKIGKIEQCLELYRDMCSKG------CAPNFITYRVLINHCCSTGLLDEAHRLL 807

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI-------ESEGCIPDTSSYNTL 355
            +MK       +  Y  +I+G+         R+   SI       E+E  +P  S Y  L
Sbjct: 808 DEMKQTYWPRHISSYRKIIEGF--------NREFITSIGLLDELSENES-VPVESLYRIL 858

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDG 415
           I+++ K  ++E AL+L  E+ S       S  L  A  +             ++  L++ 
Sbjct: 859 IDNFIKAGRLEGALNLLEEISS-------SPSLAVANKY-------------LYTSLIES 898

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
           L  + ++  A+EL+  +      P + T+  +I GL   G  ++A  L
Sbjct: 899 LSHASKVDKAFELYASMINKNVVPELSTFVHLIKGLTRVGKWQEALQL 946



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 137/350 (39%), Gaps = 95/350 (27%)

Query: 202 IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA----------- 250
           +I   C++G  N        +K  G       YN+LI+V+  A   + A           
Sbjct: 176 LIQKCCRNGMWNVALEELGRLKDFGYKASPTTYNALIQVFLRADKLDTAFLVHREMSNSG 235

Query: 251 -----------------KGNTSAALEL--HEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
                             G    AL L   EEFV           PD + Y  +++ LC+
Sbjct: 236 FRMDGCTLGCFAYSLCKAGRCGDALSLLEKEEFV-----------PDTVFYNRMVSGLCE 284

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
             L  +A ++   M+S   IP+VV Y  L+ G    G++   +++   + +EGC P+   
Sbjct: 285 ASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREM 344

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------------NSCILEAAE- 392
           +N+L+++Y K      A  L+ +MI  G +P                    S +LE AE 
Sbjct: 345 FNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFIGSICSNEELPGSDLLELAEK 404

Query: 393 -------------------LFRTL-----HNTKFEL-----------DLTVFNCLVDGLC 417
                                R L      +  FE+           D + ++ ++  LC
Sbjct: 405 AYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLC 464

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            + ++  A+ LF+++ + G  P+V TYT++I   C  G I++A +   +M
Sbjct: 465 DASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEM 514



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 111/292 (38%), Gaps = 65/292 (22%)

Query: 106 FICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165
           F+ +SER    G  P+  + + L+N   K   +      L ++L    +P+VV    +I 
Sbjct: 667 FVKMSER----GYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMID 722

Query: 166 GLCMQGKFTEASGLFTKFVAFDCRPNVI-------------------------------P 194
           GLC  GK  EA  L  K     C PNVI                               P
Sbjct: 723 GLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAP 782

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKG----RGIYPDAFVYNSLIRVYCCAVNWED- 249
           N I Y  +I+  C  G +++   L  +MK     R I     +     R +  ++   D 
Sbjct: 783 NFITYRVLINHCCSTGLLDEAHRLLDEMKQTYWPRHISSYRKIIEGFNREFITSIGLLDE 842

Query: 250 ---------------------AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
                                  G    AL L EE ++ +  L V    +   Y S+I S
Sbjct: 843 LSENESVPVESLYRILIDNFIKAGRLEGALNLLEE-ISSSPSLAV---ANKYLYTSLIES 898

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
           L     VDKA EL+  M ++ ++P++  +  LI G   +G+  +A +L  SI
Sbjct: 899 LSHASKVDKAFELYASMINKNVVPELSTFVHLIKGLTRVGKWQEALQLSDSI 950



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 126/326 (38%), Gaps = 64/326 (19%)

Query: 233 VYNSLIRVYCC-AVNWEDAKGNTSAAL-----ELHEEFVN-------GNG-------ELG 272
           VYN+LI + CC AVN +         +     EL  + +N        NG       ELG
Sbjct: 135 VYNALIELLCCNAVNNDRVSHKFLMQIRDDDRELLRKLLNFLIQKCCRNGMWNVALEELG 194

Query: 273 VICHPDVLSYCSIINSLCKDVL-VDKAKELFL---DMKSRGIIPDVVVYSSLIDGYCLMG 328
            +      +  +  N+L +  L  DK    FL   +M + G   D           C  G
Sbjct: 195 RLKDFGYKASPTTYNALIQVFLRADKLDTAFLVHREMSNSGFRMDGCTLGCFAYSLCKAG 254

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---- 384
           R  DA  L   +E E  +PDT  YN +++   +    +EA+ +   M S+   P+     
Sbjct: 255 RCGDALSL---LEKEEFVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVTYR 311

Query: 385 ---SCILEAAELFRTLHNTKFEL------DLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
              S  L   +L R        +      +  +FN LV   CKS     A++LFKK+ + 
Sbjct: 312 ILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKC 371

Query: 436 GPEPNVVTYTVMICGLCIEGGI---------EKAYDLLPDME--------EKIRECL--- 475
           G +P  + Y + I  +C    +         EKAY  + D+              CL   
Sbjct: 372 GCQPGYLLYNIFIGSICSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGA 431

Query: 476 ----KAIELLHKMAKRYVKPDEITVS 497
               KA E++ +M  +   PD+ T S
Sbjct: 432 GKFDKAFEIICEMMSKGFVPDDSTYS 457


>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
          Length = 621

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 124/467 (26%), Positives = 202/467 (43%), Gaps = 90/467 (19%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142
           P P +   N+LL ALA  + + +   L+ R+    L     +   L+N +C    +  A 
Sbjct: 37  PLPPLRCLNTLLMALARHRMFPDMESLASRMPARNLR----TYTTLINAYCLAGDIPAAK 92

Query: 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF---------------------- 180
             L  +L    +PD       + G C  G  T A  +F                      
Sbjct: 93  QHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGL 152

Query: 181 ----------TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
                     T FV      +  P+   YA+++ GLC+ G   +  VL  +    G  P+
Sbjct: 153 LGAGMVREAMTVFVGMRA-DSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPN 211

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
             VYN+LI  YC A       G    AL++ E      G  G  C P+V +Y  +I+ LC
Sbjct: 212 IVVYNALIDGYCNA-------GEMEHALKVFE------GMDGNRCSPNVRTYTELIHGLC 258

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K   V++A  LF  M   G+ P+VV Y++LI G C  G +  A +L   +E+ G +P+  
Sbjct: 259 KSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDW 318

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFN 410
           +++ LI++  K EKVEEA    G ++  GV+                      ++  V+ 
Sbjct: 319 TFSVLIDALCKREKVEEAQLFLGSLVKKGVK----------------------VNEVVYT 356

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            L+DGLCK+ ++ +A EL +K+   G  P+  +Y+ +I GLC +  + +A  +L DM EK
Sbjct: 357 SLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEK 416

Query: 471 ------------IRECLKAI------ELLHKMAKRYVKPDEITVSIL 499
                       I E ++ +      ++  KM    + PD +T ++ 
Sbjct: 417 GIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVF 463



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 111/407 (27%), Positives = 172/407 (42%), Gaps = 42/407 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E+  AL  F  M   + +P + ++  L+  L         + L  R+   GL P+ V+  
Sbjct: 227 EMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYT 286

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+   C    +  AF  L  +      P+  T   LI  LC + K  EA       V  
Sbjct: 287 ALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLV-- 344

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             +  V  N + Y S+IDGLCK G ++    L   M   G  PDA  Y+SLI   C    
Sbjct: 345 --KKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLC---- 398

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
               K  + A L L +       E G+   P  ++Y  II+ L ++V  +  K++F  M 
Sbjct: 399 --RQKKLSQATLMLEDMM-----EKGIQASP--VTYTIIIDELVREVGSEGPKKIFDKMI 449

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           + GI PD+V Y+  +  YC  GR++DA  + V +   G  P+  +YNTLI  Y+ +  V 
Sbjct: 450 ATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVS 509

Query: 367 EALSLYGEMISMGVRP------------------DNSC-ILEAAE------LFRTLHNTK 401
           +A S +  M+  G +P                  DNS  I + A+      L   +   +
Sbjct: 510 QAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLEDITERQ 569

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
             L   +++C +  LC+  RL  A   F  +      P+   YT +I
Sbjct: 570 LPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSII 616



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 151/322 (46%), Gaps = 30/322 (9%)

Query: 153 FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFV 212
           F P++V    LI G C  G+   A  +F       C PNV      Y  +I GLCK G V
Sbjct: 208 FEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVR----TYTELIHGLCKSGKV 263

Query: 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
            +  VLF  M   G+ P+   Y +LI+  C        +G+   A  L    +  NG + 
Sbjct: 264 ERAMVLFSRMVEAGLEPNVVTYTALIQGQC-------NEGHLQCAFRLLH-LMETNGLV- 314

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
               P+  ++  +I++LCK   V++A+     +  +G+  + VVY+SLIDG C  G+ID 
Sbjct: 315 ----PNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDA 370

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------N 384
           A +L   + SEG +PD  SY++LI+   + +K+ +A  +  +M+  G++          +
Sbjct: 371 ADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIID 430

Query: 385 SCILEAA-----ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
             + E       ++F  +  T    D+  +   V   C+  R+  A  +  ++   G  P
Sbjct: 431 ELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFP 490

Query: 440 NVVTYTVMICGLCIEGGIEKAY 461
           N+VTY  +I G    G + +A+
Sbjct: 491 NLVTYNTLIRGYANLGLVSQAF 512



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 116/439 (26%), Positives = 186/439 (42%), Gaps = 58/439 (13%)

Query: 109 LSER-LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGL 167
           LS R L+    LP    LN L+    +       F  +  +  ++ + ++ T   LI   
Sbjct: 27  LSHRVLSPSAPLPPLRCLNTLLMALAR----HRMFPDMESLASRMPARNLRTYTTLINAY 82

Query: 168 CMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI 227
           C+ G    A    T  +       + P+   Y S + G C+ G +     +F+ M  RG 
Sbjct: 83  CLAGDIPAAKQHLTSLL----HAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGC 138

Query: 228 YPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIIN 287
              AF Y +L+     A       G    A+ +   FV    +    C PD   Y ++++
Sbjct: 139 LRTAFTYTALLHGLLGA-------GMVREAMTV---FVGMRAD---SCAPDTHVYATMVH 185

Query: 288 SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
            LC+    ++A+ L  +  S G  P++VVY++LIDGYC  G ++ A K+F  ++   C P
Sbjct: 186 GLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSP 245

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------NSCILEAAELFR 395
           +  +Y  LI+   K  KVE A+ L+  M+  G+ P+            N   L+ A  FR
Sbjct: 246 NVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCA--FR 303

Query: 396 TLH----NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
            LH    N     D T F+ L+D LCK  ++  A      L + G + N V YT +I GL
Sbjct: 304 LLHLMETNGLVPNDWT-FSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGL 362

Query: 452 CIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHE 511
           C  G I+ A                  EL+ KM      PD  + S L + L + +   +
Sbjct: 363 CKTGKIDAAD-----------------ELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQ 405

Query: 512 CMNLLPSFLSRNQEESKLT 530
              +L   + +  + S +T
Sbjct: 406 ATLMLEDMMEKGIQASPVT 424


>gi|222615488|gb|EEE51620.1| hypothetical protein OsJ_32898 [Oryza sativa Japonica Group]
          Length = 822

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/387 (27%), Positives = 167/387 (43%), Gaps = 33/387 (8%)

Query: 81  MQPTPFMPS---FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           M+   F+P+   + SL+  L  K        L   +   GL P+    N +++  CK   
Sbjct: 265 MEAKGFLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWS 324

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
            + A V L ++      PD++T   LI GLC +G   +A     + +    R  + PN +
Sbjct: 325 ATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAI----RRELNPNQL 380

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            Y  +I G C  G +     L ++M GRG  PD   + +LI     A       G  S A
Sbjct: 381 SYTPLIHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVA-------GKVSEA 433

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
           L + E+             PDV  Y  +I+ LCK  ++  AK +  +M  + + PD  VY
Sbjct: 434 LIVREKMTERQ------VFPDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVY 487

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           ++LIDG+     + DARK+F  +E +G  PD  S N +I  Y +   + EA+     M  
Sbjct: 488 ATLIDGFIRSENLGDARKIFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAILCMSNMRK 547

Query: 378 MGVRPDNSCILEAAELFRTLHNTKFEL-------------DLTVFNCLVDGLCKSWRLRS 424
           +G  PD          +    N    L             ++  ++ L++G CK+    S
Sbjct: 548 VGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDS 607

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGL 451
           A  LF  +      PNVVTYT++I  L
Sbjct: 608 AEGLFANMQAEALSPNVVTYTILIGSL 634



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 109/438 (24%), Positives = 181/438 (41%), Gaps = 62/438 (14%)

Query: 90  FNSLLGALAGKKYY-----VNFICLSERLNT----------IGLLPDFVSLNILMNCFCK 134
           ++ +LG  +G   Y     V  +CL  R+             G +P  V  N+L++ +C+
Sbjct: 192 YDEMLGEDSGADNYSTCVLVRGLCLEGRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCR 251

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
              +    + LG +  K F P +VT G LI  L  +G   +   LF +      +  + P
Sbjct: 252 RGDMGRGLLLLGEMEAKGFLPTLVTYGSLINCLGKKGDLEKIGSLFLEMR----KRGLSP 307

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           NV  Y S+ID LCK     +  V+   M   G  PD   +N+LI   C        +G+ 
Sbjct: 308 NVQIYNSVIDALCKCWSATQAMVILKQMFASGCDPDIITFNTLITGLC-------HEGHV 360

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
             A     E +          +P+ LSY  +I+  C    +  A +L ++M  RG  PDV
Sbjct: 361 RKAEHFLREAIRRE------LNPNQLSYTPLIHGFCMRGELMAASDLLMEMMGRGHTPDV 414

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           V + +LI G  + G++ +A  +   +      PD + YN LI+   K   +  A ++  E
Sbjct: 415 VTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKHMLPAAKNILEE 474

Query: 375 MISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
           M+   V+PD             +  + +A ++F  + +     D+   N ++ G C+   
Sbjct: 475 MLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVRPDIVSCNAMIKGYCQFGM 534

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELL 481
           +  A      + + G  P+  TYT +I G   +G +  A   L D               
Sbjct: 535 MSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCD--------------- 579

Query: 482 HKMAKRYVKPDEITVSIL 499
             M KR  KP+ +T S L
Sbjct: 580 --MIKRKCKPNVVTYSSL 595



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 111/432 (25%), Positives = 178/432 (41%), Gaps = 49/432 (11%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
             A+     M      P + +FN+L+  L  + +               L P+ +S   L
Sbjct: 326 TQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPL 385

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           ++ FC    +  A   L  ++ +  +PDVVT G LI GL + GK +EA  +  K      
Sbjct: 386 IHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMT---- 441

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
              V P+V  Y  +I GLCK   +   + +  +M  + + PD FVY +LI  +  + N  
Sbjct: 442 ERQVFPDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLG 501

Query: 249 DAKGNTSAALELHEE------------FVNGNGELGVI--------------CHPDVLSY 282
           DA+       E  E              + G  + G++              C PD  +Y
Sbjct: 502 DAR----KIFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTY 557

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
            ++I+   K   ++ A     DM  R   P+VV YSSLI+GYC  G  D A  LF ++++
Sbjct: 558 TTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFANMQA 617

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF 402
           E   P+  +Y  LI S  K +KV  A   +  M+     P++           TLH    
Sbjct: 618 EALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDV----------TLHYLVN 667

Query: 403 ELDLTVFNCLVDGLC----KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
            L  +   C+++ +C    +     +   +FKKL     +P    Y  +I  LC    + 
Sbjct: 668 GLT-SCTPCVINSICCNTSEVHGKDALLVVFKKLVFDIGDPRNSAYNAIIFSLCRHNMLR 726

Query: 459 KAYDLLPDMEEK 470
           +A D    M +K
Sbjct: 727 EALDFKNRMAKK 738



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 155/367 (42%), Gaps = 51/367 (13%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGR-GIYPDAFVYNSLIRVYCCAVNWEDAKG 252
           P   C  +++      G + K   +   ++ + G  P+    N L+++      W+DA+ 
Sbjct: 131 PTRACLGALVAAYADAGMLGKATDMCERLREQYGSLPEVTHCNRLLKLLVEQRRWDDAR- 189

Query: 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
                 +L++E       LG     D  S C ++  LC +  V++  +L       G IP
Sbjct: 190 ------KLYDEM------LGEDSGADNYSTCVLVRGLCLEGRVEEGLKLIEARWGAGCIP 237

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
            VV Y+ LIDGYC  G +     L   +E++G +P   +Y +LIN   K   +E+  SL+
Sbjct: 238 HVVFYNVLIDGYCRRGDMGRGLLLLGEMEAKGFLPTLVTYGSLINCLGKKGDLEKIGSLF 297

Query: 373 GEMISMGVRPD----NSCI---------LEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            EM   G+ P+    NS I          +A  + + +  +  + D+  FN L+ GLC  
Sbjct: 298 LEMRKRGLSPNVQIYNSVIDALCKCWSATQAMVILKQMFASGCDPDIITFNTLITGLCHE 357

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM------------ 467
             +R A    ++  R    PN ++YT +I G C+ G +  A DLL +M            
Sbjct: 358 GHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMAASDLLMEMMGRGHTPDVVTF 417

Query: 468 ---------EEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPS 518
                      K+ E L   E   KM +R V PD    ++L   L K        N+L  
Sbjct: 418 GALIHGLVVAGKVSEALIVRE---KMTERQVFPDVNIYNVLISGLCKKHMLPAAKNILEE 474

Query: 519 FLSRNQE 525
            L +N +
Sbjct: 475 MLEKNVQ 481



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 130/332 (39%), Gaps = 32/332 (9%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++++AL     M   Q  P +  +N L+  L  K        + E +    + PD     
Sbjct: 429 KVSEALIVREKMTERQVFPDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYA 488

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ F +   + DA      +  K   PD+V+   +I+G C  G  +EA    +     
Sbjct: 489 TLIDGFIRSENLGDARKIFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKV 548

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C    IP+   Y ++I G  K G +N       DM  R   P+   Y+SLI  YC    
Sbjct: 549 GC----IPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYC---- 600

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G+T +A  L   F N   E      P+V++Y  +I SL K   V +A   F  M 
Sbjct: 601 ---KTGDTDSAEGL---FANMQAE---ALSPNVVTYTILIGSLFKKDKVLRAGLYFETML 651

Query: 307 SRGIIPDVVVYSSLIDGY-----CLMGRI----------DDARKLFVSIESEGCIPDTSS 351
                P+ V    L++G      C++  I          D    +F  +  +   P  S+
Sbjct: 652 LNHCSPNDVTLHYLVNGLTSCTPCVINSICCNTSEVHGKDALLVVFKKLVFDIGDPRNSA 711

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           YN +I S  +   + EAL     M   G  P+
Sbjct: 712 YNAIIFSLCRHNMLREALDFKNRMAKKGYVPN 743



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 124/285 (43%), Gaps = 32/285 (11%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSE------RLNTIGLLPD 121
           L DA   F +M H    P + S N+++      K Y  F  +SE       +  +G +PD
Sbjct: 500 LGDARKIFEFMEHKGVRPDIVSCNAMI------KGYCQFGMMSEAILCMSNMRKVGCIPD 553

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             +   +++ + K   ++ A   L  ++++   P+VVT   LI G C  G    A GLF 
Sbjct: 554 EFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFA 613

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD----AFVYNSL 237
              A      + PNV+ Y  +I  L K   V +  + F  M      P+     ++ N L
Sbjct: 614 NMQA----EALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGL 669

Query: 238 IRVYCCAVN-----WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
                C +N       +  G   A L + ++ V   G+      P   +Y +II SLC+ 
Sbjct: 670 TSCTPCVINSICCNTSEVHGK-DALLVVFKKLVFDIGD------PRNSAYNAIIFSLCRH 722

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
            ++ +A +    M  +G +P+ + + SL+ G+C +G+  + R + 
Sbjct: 723 NMLREALDFKNRMAKKGYVPNPITFLSLLYGFCSVGKSMNWRTIL 767


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 187/413 (45%), Gaps = 30/413 (7%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +++ +  F  M      P + ++  ++ AL      +  I L   +   G  P+  +  +
Sbjct: 55  VDEGINIFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTV 114

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++N  CK   + +    L  ++ K   P V T   LI G C +G    A  +     +  
Sbjct: 115 MINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNS 174

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C PN       Y  +I G C+   V++   L   M    + P    YNSLI   C     
Sbjct: 175 CNPNERT----YNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQC----- 225

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               G   +A  L    +N   E GV+  PD  +Y   I++LCK   +++A  LF  +K 
Sbjct: 226 --KIGYLDSAYRL----LNLMNENGVV--PDQWTYSVFIDTLCKKGRIEEANVLFNSLKE 277

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           +GI  + V+Y++LIDGYC  G++DDA  L   + +E C+P++S+YN LI+   K  KV+E
Sbjct: 278 KGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQE 337

Query: 368 ALSLYGEMISMGVR---PDNSCIL----------EAAELFRTLHNTKFELDLTVFNCLVD 414
           AL L   MI  G++   P  + ++           A  +   + ++ ++ D+ ++   + 
Sbjct: 338 ALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIH 397

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
             C    ++ A ++   +   G  P+ +TYT++I      G +  A+D+L  M
Sbjct: 398 AFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRM 450



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 115/446 (25%), Positives = 190/446 (42%), Gaps = 45/446 (10%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N+   E +L +     + M+     P +P++N+L+     +        + + +++    
Sbjct: 117 NAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCN 176

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+  + N L+  FC+   V  A   L ++L    +P VVT   LI G C  G    A  L
Sbjct: 177 PNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRL 236

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
                       V+P+   Y+  ID LCK G + +  VLF  +K +GI  +  +Y +LI 
Sbjct: 237 LNLMN----ENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALID 292

Query: 240 VYCCAVNWEDAKG------------NTSA----------------ALELHEEFVNGNGEL 271
            YC A   +DA              N+S                 AL L E  +    + 
Sbjct: 293 GYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMI----QK 348

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
           G+ C   V +Y  +I ++ K+   D A  +   M S G  PDV +Y++ I  +C  G I 
Sbjct: 349 GLKC--TVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIK 406

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---SCIL 388
           +A  +   +   G +PD  +Y  +I++Y  +  +  A  +   M   G  P +   SC++
Sbjct: 407 EAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLI 466

Query: 389 E---AAELFRTLHNTKFELDL-TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
           +     EL +   N      +  VF   V  + K  +  +A ELF+K+  +G  PN+ TY
Sbjct: 467 KHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFETALELFEKMLEHGCSPNINTY 526

Query: 445 TVMICGLCIEGGIEKAYDLLPDMEEK 470
             +I GLC  G +  A  L   M E+
Sbjct: 527 AKLIIGLCKVGRLGVAQKLFDHMNER 552



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 101/435 (23%), Positives = 182/435 (41%), Gaps = 59/435 (13%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A+   + M+  + TP + ++NSL+       Y  +   L   +N  G++PD  + ++
Sbjct: 195 VHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSV 254

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
            ++  CK   + +A V    +  K    + V    LI G C  GK  +A+ L  + +  D
Sbjct: 255 FIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTED 314

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C    +PN   Y ++IDGLCK+  V +  +L   M  +G+      Y  LI         
Sbjct: 315 C----LPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAML----- 365

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
              +G+   A  + ++ V+   +      PDV  Y + I++ C    + +A+++   M  
Sbjct: 366 --KEGDFDYAHRILDQMVSSGYQ------PDVYIYTAFIHAFCTRGNIKEAEDMMSMMFE 417

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE---- 363
           RG++PD + Y+ +ID Y  +G ++ A  +   +   GC P   +Y+ LI    K E    
Sbjct: 418 RGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKK 477

Query: 364 -------------------------KVEEALSLYGEMISMGVRPDNSCILE--------- 389
                                    K E AL L+ +M+  G  P+ +   +         
Sbjct: 478 YKNVALCDSIPNVFFADVADVWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVG 537

Query: 390 ----AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
               A +LF  ++         ++N L++  C+      A  L   +  +G  P + +  
Sbjct: 538 RLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELGIYGDAVRLVGAMMEHGHLPLLESLN 597

Query: 446 VMICGLCIEGGIEKA 460
           V+ CGL  EG  EKA
Sbjct: 598 VLFCGLYEEGSKEKA 612



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 107/263 (40%), Gaps = 40/263 (15%)

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
           C  + +SY ++I+ LC+   VD+   +F  M+     P V  Y+ ++      GR  +A 
Sbjct: 35  CRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIVHALFESGRRMEAI 94

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
            LF  +   GC P+  +Y  +IN+  K  K+EE   +  EM+  G+ P            
Sbjct: 95  NLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVP------------ 142

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
                      +  +N L+DG CK   + +A E+   +      PN  TY  +ICG C +
Sbjct: 143 ----------SVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRK 192

Query: 455 GGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITV 496
             + +A  LL  M E                  KI     A  LL+ M +  V PD+ T 
Sbjct: 193 KNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTY 252

Query: 497 SILEELLNKDENCHECMNLLPSF 519
           S+  + L K     E   L  S 
Sbjct: 253 SVFIDTLCKKGRIEEANVLFNSL 275



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 94/409 (22%), Positives = 158/409 (38%), Gaps = 58/409 (14%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +++DA    + M+     P   ++N+L+  L  ++     + L E +   GL     +  
Sbjct: 299 KMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYT 358

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           IL+    K      A   L +++   + PDV      I   C +G   EA  + +     
Sbjct: 359 ILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMF-- 416

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR------- 239
                V+P+ + Y  +ID     G +N    +   M   G  P    Y+ LI+       
Sbjct: 417 --ERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEEL 474

Query: 240 ------VYCC-----------AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
                 V  C           A  W+  K  T  ALEL E+ +    E G  C P++ +Y
Sbjct: 475 TKKYKNVALCDSIPNVFFADVADVWKMMKFET--ALELFEKML----EHG--CSPNINTY 526

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
             +I  LCK   +  A++LF  M  RG+ P   +Y+SL++  C +G   DA +L  ++  
Sbjct: 527 AKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELGIYGDAVRLVGAMME 586

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF 402
            G +P   S N L     +    E+A  ++  ++  G   D                   
Sbjct: 587 HGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCGYNDDE------------------ 628

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
                 +  L+DGL K+       EL   +   G + +  TY ++I GL
Sbjct: 629 ----VAWKILIDGLLKNGLSDGCSELLGVMEARGCQIHPQTYRMLIEGL 673


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/395 (25%), Positives = 189/395 (47%), Gaps = 33/395 (8%)

Query: 85  PFMPSFNSLLGALAGK-KYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           P +P +N+L+  +  + +  V    L E ++  G+ P+ VS + ++N  C    V  AF 
Sbjct: 242 PSVPVYNALIDGMCKEGRIEVAIKLLGEMMDN-GVDPNVVSYSCIINSLCVSGNVELAFA 300

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
              ++  +    ++ T   LI+G  M+GK  EA  L+   +   C PNV+     Y ++I
Sbjct: 301 LFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVA----YNTLI 356

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
            GLC +G + +   +   M+  G  P+   Y+ LI  +          G+   A E    
Sbjct: 357 HGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFA-------KSGDLVGASETWNR 409

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
            ++        C P+V++Y  +++ LCK+ + D+A  L   M   G  P+ + +++ I G
Sbjct: 410 MISHG------CRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKG 463

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            C  GR++ A KL   ++  GC+P+ ++YN L+++  ++ K EEA  L+ E+ +  ++P+
Sbjct: 464 LCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPN 523

Query: 384 ----NSCIL---------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
               N+ +          EA +LF          D   +N ++   CK  +++ A +L +
Sbjct: 524 LVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVE 583

Query: 431 KLPRYGP-EPNVVTYTVMICGLCIEGGIEKAYDLL 464
           ++       P+++TYT +I G C    IE+A   L
Sbjct: 584 RVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFL 618



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/465 (24%), Positives = 198/465 (42%), Gaps = 64/465 (13%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P +  +N LL AL  +  +     L   +   GL+P+  + NIL+   CK   V  A   
Sbjct: 142 PTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKL 201

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
              +  K   PD VT   ++  LC  GK  +A  L  +F          P+V  Y ++ID
Sbjct: 202 FVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFK---------PSVPVYNALID 252

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE- 263
           G+CK+G +     L  +M   G+ P+   Y+ +I   C +       GN   A  L  + 
Sbjct: 253 GMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVS-------GNVELAFALFAQM 305

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
           F+ G       C  ++ ++  +I        + +A +L+  M   G  P+VV Y++LI G
Sbjct: 306 FLRG-------CDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHG 358

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            C  G +++A ++   ++  GC+P+ ++Y+ LI+ ++K   +  A   +  MIS G RP 
Sbjct: 359 LCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRP- 417

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                                ++  + C+VD LCK+     A  L +K+   G  PN +T
Sbjct: 418 ---------------------NVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMT 456

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMA 485
           +   I GLC  G +E A  LL  M+                   ++ +  +A  L  ++ 
Sbjct: 457 FNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIE 516

Query: 486 KRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
            R ++P+ +T + +    ++     E + L    L R      +T
Sbjct: 517 ARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSIT 561



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 164/358 (45%), Gaps = 52/358 (14%)

Query: 162 CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD 221
           C+I G    G   +A  +F +   F C+    P V  Y  ++D L  +     +  L+ +
Sbjct: 114 CIINGYKRVGSAEQALKMFYRIGEFGCK----PTVRIYNHLLDALLSENKFQMINPLYTN 169

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
           MK  G+ P+ F YN L++  C             AA +L  E  N        C PD ++
Sbjct: 170 MKKDGLIPNVFTYNILLKALC-------KNDRVDAAHKLFVEMSNKG------CPPDAVT 216

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y ++++SLCK   +D A+EL    K     P V VY++LIDG C  GRI+ A KL   + 
Sbjct: 217 YTTMVSSLCKAGKIDDARELAGRFK-----PSVPVYNALIDGMCKEGRIEVAIKLLGEMM 271

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------NSCIL----- 388
             G  P+  SY+ +INS      VE A +L+ +M   G   +          C +     
Sbjct: 272 DNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLY 331

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
           EA +L++ +     E ++  +N L+ GLC +  L  A ++  ++ R G  PNV TY+++I
Sbjct: 332 EALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILI 391

Query: 449 CGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
                  G  K+ DL           + A E  ++M     +P+ +T + + ++L K+
Sbjct: 392 ------DGFAKSGDL-----------VGASETWNRMISHGCRPNVVTYTCMVDVLCKN 432



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 129/269 (47%), Gaps = 40/269 (14%)

Query: 199 YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL 258
           Y  +I+ L ++  ++ V+ +   MK  GI       N    ++ C +N     G+   AL
Sbjct: 77  YRVMIERLGRECEMDMVQYILQQMKMDGI-------NCCEDLFICIINGYKRVGSAEQAL 129

Query: 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS 318
           ++        GE G  C P V  Y  ++++L  +        L+ +MK  G+IP+V  Y+
Sbjct: 130 KMFYRI----GEFG--CKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYN 183

Query: 319 SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
            L+   C   R+D A KLFV + ++GC PD  +Y T+++S  K  K+++A  L G     
Sbjct: 184 ILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAG----- 238

Query: 379 GVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
                                 +F+  + V+N L+DG+CK  R+  A +L  ++   G +
Sbjct: 239 ----------------------RFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVD 276

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           PNVV+Y+ +I  LC+ G +E A+ L   M
Sbjct: 277 PNVVSYSCIINSLCVSGNVELAFALFAQM 305



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 150/321 (46%), Gaps = 24/321 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L +AL  +  MI     P + ++N+L+  L         + + +++   G LP+  + +
Sbjct: 329 KLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYS 388

Query: 127 ILMNCFCK---MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           IL++ F K   ++G S+ +    R++     P+VVT  C++  LC    F +A+ L  K 
Sbjct: 389 ILIDGFAKSGDLVGASETW---NRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKM 445

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
               C PN +     + + I GLC +G V     L   M+G G  P+   YN L+     
Sbjct: 446 TLEGCTPNTMT----FNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFR 501

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
              +E+A G       L +E    N        P++++Y +++    +  ++ +A +LF 
Sbjct: 502 MNKYEEAFG-------LFQEIEARN------LQPNLVTYNTVLYGFSRAGMMGEALQLFG 548

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES-EGCIPDTSSYNTLINSYSKI 362
               RG  PD + Y+++I  YC  G++  A +L   + S +   PD  +Y +LI      
Sbjct: 549 KALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNW 608

Query: 363 EKVEEALSLYGEMISMGVRPD 383
             +EEA++   + I+ G+ P+
Sbjct: 609 MNIEEAMAFLDKAINQGICPN 629


>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
          Length = 621

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 126/470 (26%), Positives = 205/470 (43%), Gaps = 96/470 (20%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142
           P P +   N+LL ALA  + + +   L+ R+    L     +   L+N +C    +  A 
Sbjct: 37  PLPPLRCLNTLLMALARHRMFPDMESLASRMPARNLR----TYTTLINAYCLAGDIPAAK 92

Query: 143 VALGRILRKVFSPD---------------VVTLGC--------------------LIRGL 167
             L  +L    +PD               ++T  C                    L+ GL
Sbjct: 93  QHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGL 152

Query: 168 CMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI 227
              G   EA  +F    A  C     P+   YA+++ GLC+ G   +  VL  +    G 
Sbjct: 153 LGAGMVREAMAVFVGMRADSC----APDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGF 208

Query: 228 YPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIIN 287
            P+  VYN+LI  YC A       G    AL++ E      G  G  C P+V +Y  +I+
Sbjct: 209 EPNIVVYNALIDGYCNA-------GEMEHALKVFE------GMDGNRCSPNVRTYTELIH 255

Query: 288 SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
            LCK   V++A  LF  M   G+ P+VV Y++LI G C  G +  A +L   +E+ G +P
Sbjct: 256 GLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVP 315

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLT 407
           +  +++ LI++  K EKVEEA    G ++  GV+                      ++  
Sbjct: 316 NDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVK----------------------VNEV 353

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           V+  L+DGLCK+ ++ +A EL +K+   G  P+  +Y+ +I GLC +  + +A  +L DM
Sbjct: 354 VYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDM 413

Query: 468 EEK------------IRECLKAI------ELLHKMAKRYVKPDEITVSIL 499
            EK            I E ++ +      ++  KM    + PD +T ++ 
Sbjct: 414 MEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVF 463



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 153/331 (46%), Gaps = 30/331 (9%)

Query: 153 FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFV 212
           F P++V    LI G C  G+   A  +F       C PNV      Y  +I GLCK G V
Sbjct: 208 FEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVR----TYTELIHGLCKSGKV 263

Query: 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
            +  VLF  M   G+ P+   Y +LI+  C        +G+   A  L    +  NG + 
Sbjct: 264 ERAMVLFSRMVEAGLEPNVVTYTALIQGQC-------NEGHLQCAFRLLH-LMETNGLV- 314

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
               P+  ++  +I++LCK   V++A+     +  +G+  + VVY+SLIDG C  G+ID 
Sbjct: 315 ----PNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDA 370

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------N 384
           A +L   + SEG +PD  SY++LI+   + +K+ +A  +  +M+  G++          +
Sbjct: 371 ADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIID 430

Query: 385 SCILEAA-----ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
             + E       ++F  +  T    D+  +   V   C+  R+  A  +  ++   G  P
Sbjct: 431 ELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFP 490

Query: 440 NVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           N+VTY  +I G    G + +A+     M  K
Sbjct: 491 NLVTYNTLIRGYANLGLVSQAFSTFEVMVGK 521



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 109/402 (27%), Positives = 170/402 (42%), Gaps = 38/402 (9%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E+  AL  F  M   + +P + ++  L+  L         + L  R+   GL P+ V+  
Sbjct: 227 EMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYT 286

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+   C    +  AF  L  +      P+  T   LI  LC + K  EA       V  
Sbjct: 287 ALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLV-- 344

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             +  V  N + Y S+IDGLCK G ++    L   M   G  PDA  Y+SLI   C    
Sbjct: 345 --KKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLC---- 398

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
               K  + A L L +       E G+   P  ++Y  II+ L ++V  +  K++F  M 
Sbjct: 399 --RQKKLSQATLMLEDMM-----EKGIQASP--VTYTIIIDELVREVGSEGPKKIFDKMI 449

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           + GI PD+V Y+  +  YC  GR++DA  + V +   G  P+  +YNTLI  Y+ +  V 
Sbjct: 450 ATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVS 509

Query: 367 EALSLYGEMISMGVRP------------------DNSCILEAAELFRTLHNTKFELDLTV 408
           +A S +  M+  G +P                  DNS  +      + L  + +  D  V
Sbjct: 510 QAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQESNY--DEIV 567

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
           +  L+ GL +   +     L   +  +G +P+  T   MI G
Sbjct: 568 WKILIYGLLQKGSVAEFSSLLSVMKEHGYQPS-NTINAMITG 608



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 112/428 (26%), Positives = 181/428 (42%), Gaps = 57/428 (13%)

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
           LP    LN L+    +       F  +  +  ++ + ++ T   LI   C+ G    A  
Sbjct: 38  LPPLRCLNTLLMALAR----HRMFPDMESLASRMPARNLRTYTTLINAYCLAGDIPAAKQ 93

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
             T  +       + P+   Y S + G C+ G +     +F+ M  RG    AF Y +L+
Sbjct: 94  HLTSLL----HAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALL 149

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
                A       G    A+ +   FV    +    C PD   Y ++++ LC+    ++A
Sbjct: 150 HGLLGA-------GMVREAMAV---FVGMRAD---SCAPDTHVYATMVHGLCEAGRTEEA 196

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
           + L  +  S G  P++VVY++LIDGYC  G ++ A K+F  ++   C P+  +Y  LI+ 
Sbjct: 197 EVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHG 256

Query: 359 YSKIEKVEEALSLYGEMISMGVRPD------------NSCILEAAELFRTLH----NTKF 402
             K  KVE A+ L+  M+  G+ P+            N   L+ A  FR LH    N   
Sbjct: 257 LCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCA--FRLLHLMETNGLV 314

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
             D T F+ L+D LCK  ++  A      L + G + N V YT +I GLC  G I+ A  
Sbjct: 315 PNDWT-FSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAAD- 372

Query: 463 LLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
                           EL+ KM      PD  + S L + L + +   +   +L   + +
Sbjct: 373 ----------------ELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEK 416

Query: 523 NQEESKLT 530
             + S +T
Sbjct: 417 GIQASPVT 424


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 113/436 (25%), Positives = 190/436 (43%), Gaps = 42/436 (9%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L+ A   FN M      P   ++++L+  L         +     +   G+LP   +  
Sbjct: 278 DLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFT 337

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
             +   C M  + DA+     + +K   P+V T   LI G   Q     A GLF +    
Sbjct: 338 APIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISG---QRVSRMAIGLFHRM--- 391

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             R  V+PN + Y ++++ L ++  ++   ++F  M   G  P+   YN LIR YC   +
Sbjct: 392 -SRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGD 450

Query: 247 WEDA--------KGNTSAALELHEEFVNG---NGELGVI-----------CHPDVLSYCS 284
            E A        KG  +  L  +   + G   +G+  V            C PD  SY  
Sbjct: 451 TEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTE 510

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           +I+  CK   ++ A  +F +M  RG+ P+ V Y++LI GYC   ++D A ++   ++  G
Sbjct: 511 LISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSG 570

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAA 391
           C P+  +YN LI+  +K      A  L   M+   + PD             N  I  A 
Sbjct: 571 CRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLAL 630

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
           E+F  +       +L  ++ L+  L +  R+  A E+F +L + G  P+ VTY  MI   
Sbjct: 631 EMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVC 690

Query: 452 CIEGGIEKAYDLLPDM 467
            + G +++A+D L +M
Sbjct: 691 VMSGKVDRAFDFLGEM 706



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 120/462 (25%), Positives = 194/462 (41%), Gaps = 67/462 (14%)

Query: 90  FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149
           +NS++ AL       +   +  ++   G+ PD  +   ++  +C+   +  AF    R+ 
Sbjct: 231 YNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMD 290

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD 209
            +   P+  T   LI GLC  G+  EA      F++   R  V+P V  + + I  LC  
Sbjct: 291 EEGCEPNAATYSTLINGLCNSGRVNEA----LDFISEMTRHGVLPTVHTFTAPIVALCDM 346

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLI---RVYCCAVNW------EDAKGNTSA---- 256
           G +     +F+DMK +G  P+ + Y SLI   RV   A+        +    NT      
Sbjct: 347 GRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQRVSRMAIGLFHRMSRDGVVPNTVTYNAL 406

Query: 257 ------ALELHEEFV--NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
                  +E+    +  N  G+ G  C P+  SY  +I   C     +KA  +  +M   
Sbjct: 407 MNVLMENMEIDSALIVFNMMGKHG--CLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKG 464

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
              P +V Y+ +I GYC  G  D A ++   +++ GC PD  SY  LI+ + KI K+E A
Sbjct: 465 RPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELA 524

Query: 369 LSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
             ++ EM+  G+ P+                         +  L+ G CK  +L  A  +
Sbjct: 525 SGMFNEMMDRGLCPNE----------------------VTYTALISGYCKDEKLDCAARM 562

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM-EEKIRECLK----------- 476
            +++ R G  PNV TY V+I GL  +     A +L   M EEKI   +            
Sbjct: 563 LERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCN 622

Query: 477 ------AIELLHKMAKRYVKPDEITVSILEELLNKDENCHEC 512
                 A+E+ +KM K    P+  T S L + L ++    E 
Sbjct: 623 NGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEA 664



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 125/519 (24%), Positives = 207/519 (39%), Gaps = 91/519 (17%)

Query: 63  SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF 122
           S + E+  AL + +      P   + ++ +LL  L         +    ++   GL P+ 
Sbjct: 169 SNKAEMTQALNYLDMFSQRGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNL 228

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           +  N ++N  CK   V DA   + ++ +    PD  T   +I G C       A  +F +
Sbjct: 229 LIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNR 288

Query: 183 FVAFDCRPN-------------------------------VIPNVICYASIIDGLCKDGF 211
                C PN                               V+P V  + + I  LC  G 
Sbjct: 289 MDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGR 348

Query: 212 VNKVRVLFLDMKGRGIYPDAFVYNSLI---RVYCCAV------NWEDAKGNTSA------ 256
           +     +F+DMK +G  P+ + Y SLI   RV   A+      + +    NT        
Sbjct: 349 IEDAWKIFIDMKKKGCKPNVYTYTSLISGQRVSRMAIGLFHRMSRDGVVPNTVTYNALMN 408

Query: 257 ----ALELHEEFV--NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
                +E+    +  N  G+ G  C P+  SY  +I   C     +KA  +  +M     
Sbjct: 409 VLMENMEIDSALIVFNMMGKHG--CLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRP 466

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
            P +V Y+ +I GYC  G  D A ++   +++ GC PD  SY  LI+ + KI K+E A  
Sbjct: 467 TPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASG 526

Query: 371 LYGEMISMGVRPDNSCILE-------------AAELFRTLHNTKFELDLTVFNCLVDGLC 417
           ++ EM+  G+ P+                   AA +   +  +    ++  +N L+ GL 
Sbjct: 527 MFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLT 586

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL---------LPDM- 467
           K      A EL K +      P+VVTY+ +I GLC  G I  A ++         LP++ 
Sbjct: 587 KQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLH 646

Query: 468 -----------EEKIRECLKAIELLHKMAKRYVKPDEIT 495
                      E ++ E   A E+  ++ K+ + PDE+T
Sbjct: 647 TYSSLIQALGQEGRVEE---AEEMFSELKKQGLIPDEVT 682



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 121/512 (23%), Positives = 205/512 (40%), Gaps = 79/512 (15%)

Query: 63  SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF 122
           SG+     A+  F+ M      P   ++N+L+  L       + + +   +   G LP+ 
Sbjct: 376 SGQRVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNT 435

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
            S N L+  +C +     A   L  +L+   +P +VT   +I+G C  G    A  +   
Sbjct: 436 SSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLEL 495

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
             A  C+P+       Y  +I G CK   +     +F +M  RG+ P+   Y +LI  YC
Sbjct: 496 MKANGCQPDEW----SYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYC 551

Query: 243 ------CAVNWED--AKGNTSAALELHEEFVNG----NGELGV--ICH--------PDVL 280
                 CA    +   +      ++ +   ++G    N   G   +C         PDV+
Sbjct: 552 KDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVV 611

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
           +Y ++IN LC +  +  A E+F  M   G +P++  YSSLI      GR+++A ++F  +
Sbjct: 612 TYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSEL 671

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP------------------ 382
           + +G IPD  +Y  +I       KV+ A    GEMI+ G +P                  
Sbjct: 672 KKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQNEMVY 731

Query: 383 ---------------DNSCILE--AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
                          D+  I +   + L   L    FEL   +++ L+  L +S R   A
Sbjct: 732 HKLVALPNAASTSTFDDQIINKDVISVLSSKLAELDFELSRQLYDALLSRLSRSGRWFEA 791

Query: 426 WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK--------IRECLKA 477
             L++ +      PN  TY   +  L     ++ A D+   M ++         +E +  
Sbjct: 792 NNLYRSMVSQSQCPNQDTYKHFLISLLRALKVDLAMDVFKHMSDQRCELHLTGYKELICT 851

Query: 478 IELLH----------KMAKRYVKPDEITVSIL 499
           +  LH          KM  R +  DEI  +IL
Sbjct: 852 LCQLHRRKEARFVFEKMLSRALNADEIVWTIL 883



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 107/228 (46%), Gaps = 42/228 (18%)

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
            P++L Y S+IN+LCKD  V  A+ +   +   G+ PD   Y+S+I GYC    +D A +
Sbjct: 225 QPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFE 284

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395
           +F  ++ EGC P+ ++Y+TLIN      +V EAL    EM   GV P             
Sbjct: 285 IFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLP------------- 331

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
           T+H          F   +  LC   R+  AW++F  + + G +PNV TYT +I G     
Sbjct: 332 TVH---------TFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQ---- 378

Query: 456 GIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELL 503
                           R    AI L H+M++  V P+ +T + L  +L
Sbjct: 379 ----------------RVSRMAIGLFHRMSRDGVVPNTVTYNALMNVL 410



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 106/472 (22%), Positives = 187/472 (39%), Gaps = 87/472 (18%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           A+     M+  +PTP + ++N ++            I + E +   G  PD  S   L++
Sbjct: 454 AMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELIS 513

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
            FCK+  +  A      ++ +   P+ VT   LI G C   K   A+ +  +     CRP
Sbjct: 514 GFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRP 573

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
           NV      Y  +I GL K    +    L   M    I PD   Y+++I   C        
Sbjct: 574 NVQ----TYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLC-------N 622

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
            G    ALE+  + V         C P++ +Y S+I +L ++  V++A+E+F ++K +G+
Sbjct: 623 NGAIPLALEMFNKMVKHG------CLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGL 676

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC------------------------- 345
           IPD V Y  +I+   + G++D A      + + GC                         
Sbjct: 677 IPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQNEMVYHKLVA 736

Query: 346 IPDTSS--------------------------------YNTLINSYSKIEKVEEALSLYG 373
           +P+ +S                                Y+ L++  S+  +  EA +LY 
Sbjct: 737 LPNAASTSTFDDQIINKDVISVLSSKLAELDFELSRQLYDALLSRLSRSGRWFEANNLYR 796

Query: 374 EMISMGVRPDNSCILE-------------AAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
            M+S    P+                   A ++F+ + + + EL LT +  L+  LC+  
Sbjct: 797 SMVSQSQCPNQDTYKHFLISLLRALKVDLAMDVFKHMSDQRCELHLTGYKELICTLCQLH 856

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIR 472
           R + A  +F+K+       + + +T++I GL   G  +   + L  ME   R
Sbjct: 857 RRKEARFVFEKMLSRALNADEIVWTILINGLLGAGYKDLCMEFLHIMETNRR 908


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 175/366 (47%), Gaps = 36/366 (9%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ V+ +IL++  C+   + +AF     ++ K   P   T   LI+  C  G   +A  +
Sbjct: 263 PNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKM 322

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             +     C    +PNV  Y  +ID LC++G + +   +F  M   G+ P    +N+LI 
Sbjct: 323 LDEMATKAC----VPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALIN 378

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            YC        +G   +A +L      GN      C P++ +Y  ++  LC+   V K+ 
Sbjct: 379 GYC-------KEGWVVSAFQLLSVMEKGN------CKPNIRTYNELMEGLCR---VSKSY 422

Query: 300 ELFLDMK---SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           + FL ++     G++PD V Y+ L+DG+C  G+++ A  +F S+ S G  PD  ++  LI
Sbjct: 423 KAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALI 482

Query: 357 NSYSKIEKVEEALSLYGEMISMGVR---------PDNSCILEAAE----LFRTLHNTKFE 403
           +   K+ ++E+A  + G M+  G+           D  C +  A+    LF  +   +  
Sbjct: 483 DGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCL 542

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
                FNC +D L K ++L  A  +  K+ +YG  P+VVT+T++I G C  G    +  +
Sbjct: 543 TTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKM 602

Query: 464 LPDMEE 469
           L  M++
Sbjct: 603 LERMKQ 608



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/414 (26%), Positives = 187/414 (45%), Gaps = 45/414 (10%)

Query: 59  ENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFIC--LSERLNTI 116
           E+S++G V+L  AL   + M  +      P +++LL  LA  K  + F+   +  R+   
Sbjct: 134 EDSENGVVKLMGAL---DGMTELGFRLSYPCYSTLLMCLA--KLNMGFVAFLVYRRMVNE 188

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G +   +    ++N  CK   V  A +   ++LR  F  D      L+   C +    EA
Sbjct: 189 GFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEA 248

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             +F K        N  PN + Y+ +I GLC+ G + +   L  +M  +G  P    Y  
Sbjct: 249 FRVFEKMSK---EENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTV 305

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI+  C         G T  A+++ +E           C P+V +Y  +I+ LC++  ++
Sbjct: 306 LIKAKC-------DIGMTDKAMKMLDEMATK------ACVPNVHTYTILIDRLCREGKIE 352

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A  +F  M   G+ P ++ +++LI+GYC  G +  A +L   +E   C P+  +YN L+
Sbjct: 353 EANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELM 412

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
               ++ K  +A  L   ++  G+ PD                         +N LVDG 
Sbjct: 413 EGLCRVSKSYKAFLLLRRVVDNGLLPDR----------------------VTYNILVDGF 450

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           CK  +L  A+ +F  +   G EP+  T+T +I GLC  G +E+A  +L  M +K
Sbjct: 451 CKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKK 504



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/370 (21%), Positives = 170/370 (45%), Gaps = 30/370 (8%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           + + T   +P+  +  IL++  C+   + +A     ++L+    P ++T   LI G C +
Sbjct: 324 DEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKE 383

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G    A  L +     +C+PN+      Y  +++GLC+     K  +L   +   G+ PD
Sbjct: 384 GWVVSAFQLLSVMEKGNCKPNIRT----YNELMEGLCRVSKSYKAFLLLRRVVDNGLLPD 439

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
              YN L+  +C        +G  + A  +     +   E      PD  ++ ++I+ LC
Sbjct: 440 RVTYNILVDGFC-------KEGQLNMAFNIFNSMNSAGLE------PDGFTFTALIDGLC 486

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K   +++A  +   M  +GI  D V +++LIDG+C +G+  D   LF ++    C+    
Sbjct: 487 KLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAH 546

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCILEAA----------ELFRTL 397
           ++N  +++  K  K+ EA ++ G+M+  G+ P    ++ ++E            ++   +
Sbjct: 547 TFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERM 606

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                  ++  +  +++GLC + R+  A  +   +  +G  PN  TY V++      G +
Sbjct: 607 KQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRL 666

Query: 458 EKAYDLLPDM 467
           ++A+ ++  M
Sbjct: 667 DRAFQIVSTM 676



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 113/473 (23%), Positives = 194/473 (41%), Gaps = 94/473 (19%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL P  ++ N L+N +CK   V  AF  L  + +    P++ T   L+ GLC   K  +A
Sbjct: 365 GLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKA 424

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L  + V       ++P+ + Y  ++DG CK+G +N    +F  M   G+ PD F + +
Sbjct: 425 FLLLRRVV----DNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTA 480

Query: 237 LIRVYCCAVNWEDAKG----NTSAALELHE----EFVNGNGELGVI-------------- 274
           LI   C     E A G         + L E      ++G+ ++G                
Sbjct: 481 LIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENR 540

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
           C     ++   +++L KD  +++A  +   M   G++P VV ++ LI+G+C  G    + 
Sbjct: 541 CLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSL 600

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
           K+   ++  GC P+  +Y  +IN      +VEEA ++   M S GV P+           
Sbjct: 601 KMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPN----------- 649

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
              H T        +  LV    K+ RL  A+++   + + G +PN   Y+ ++ G  + 
Sbjct: 650 ---HFT--------YAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLS 698

Query: 455 GGI--EKAYDLLPDMEEK---------------IREC---------------------LK 476
                 +A     D++ +               I++C                     ++
Sbjct: 699 NTAIGARALSSTGDLDARSLSSEENDNNCLSNEIKKCGVPTEDLYNFLVVGLCKEGRIIE 758

Query: 477 AIELLHKMAKRYVKPDEITVSILEELLN--KDENCHECMNL------LPSFLS 521
           A +L   M K  + PD+   SI+E      K +NC E M L      +PSF S
Sbjct: 759 ADQLTQDMVKHGLFPDKAISSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFAS 811



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 159/340 (46%), Gaps = 29/340 (8%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +N+ GL PD  +   L++  CK+  +  A   LG +++K  S D VT   LI G C  GK
Sbjct: 466 MNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGK 525

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
             +   LF   V   C    +     +   +D L KD  +N+   +   M   G+ P   
Sbjct: 526 AKDVCFLFENMVENRC----LTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVV 581

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            +  LI  +C A       G T+ +L++ E            C P+V +Y  IIN LC +
Sbjct: 582 THTILIEGHCRA-------GETALSLKMLERMKQAG------CSPNVYTYTIIINGLCNN 628

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             V++A+ +   M S G+ P+   Y+ L+  +   GR+D A ++  ++   GC P++  Y
Sbjct: 629 GRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIY 688

Query: 353 NTLINSY--SKIEKVEEALSLYGEMISMGVRP---DNSCILEAAELFRTLHNTKFELDLT 407
           + L++ +  S       ALS  G++ +  +     DN+C+  + E+ +    T+      
Sbjct: 689 SALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCL--SNEIKKCGVPTE-----D 741

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
           ++N LV GLCK  R+  A +L + + ++G  P+    +++
Sbjct: 742 LYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAISSII 781



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 141/314 (44%), Gaps = 15/314 (4%)

Query: 72  LCF-FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFI-CLSERLNTIGLLPDFVSLNILM 129
           +CF F  M+  +      +FN  L AL GK Y +N    +  ++   GL+P  V+  IL+
Sbjct: 529 VCFLFENMVENRCLTTAHTFNCFLDAL-GKDYKLNEANAMLGKMMKYGLVPSVVTHTILI 587

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
              C+    + +   L R+ +   SP+V T   +I GLC  G+  EA  +     +F   
Sbjct: 588 EGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSF--- 644

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
             V PN   YA ++    K G +++   +   M   G  P++ +Y++L+  +  +     
Sbjct: 645 -GVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIG 703

Query: 250 AKGNTSA----ALELHEEFVNGN---GELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
           A+  +S     A  L  E  + N    E+     P    Y  ++  LCK+  + +A +L 
Sbjct: 704 ARALSSTGDLDARSLSSEENDNNCLSNEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLT 763

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
            DM   G+ PD  + SS+I+ YC   + D+  +    +     +P  +SY  +I+     
Sbjct: 764 QDMVKHGLFPDKAI-SSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNE 822

Query: 363 EKVEEALSLYGEMI 376
            +V+EA  L  +++
Sbjct: 823 GRVQEAQKLVSDLV 836


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 124/459 (27%), Positives = 203/459 (44%), Gaps = 70/459 (15%)

Query: 62   KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNF-ICLSERLNTIGLLP 120
            K+GEV+L  AL     M  M   P + ++N+++  L  K+  VN+   L  ++  + + P
Sbjct: 624  KNGEVDL--ALKMLFRMTEMNCFPDVLTYNTVIYGLI-KENRVNYAFWLFHQMKKV-IYP 679

Query: 121  DFVSLNILMNCFCKMIGVSDAFVALGRILRKV-------FSPDVV--------------- 158
            D+V+L  L+    K   + DAF      +  V       F  D++               
Sbjct: 680  DYVTLCTLLPGVIKDGRIEDAFRVAKEFVHHVGDHADGSFWEDLMGGILIEAEIGQSILF 739

Query: 159  --TLGC------------LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
              +L C            L++ LC  GK  +A  +F K     C   + P++  Y S+ID
Sbjct: 740  AESLVCNTICEDDSVLIPLVKFLCKHGKAVDAYNVFLKLTKSFC---ITPSLEAYNSLID 796

Query: 205  GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
            GL K         LF  MK  G  PD F YN  +             G      +L+EE 
Sbjct: 797  GLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDAL-------GKSGKIKELFDLYEEM 849

Query: 265  VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
            +         C P+ +++  +I  L K   +DKA +L+ D+ S    P    Y  LIDG 
Sbjct: 850  LFRG------CKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGL 903

Query: 325  CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
              +GR+++A++ F  +   GC+P+   YN L+N + K   VE A  L+  M+  G+RPD 
Sbjct: 904  LKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDL 963

Query: 385  S---------CIL----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
                      C++    +A   F  L  +  + DL  +N +++GL +S R+  A  LF +
Sbjct: 964  KSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDE 1023

Query: 432  LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            +   G  P++ TY  +I  L I G +E+A  +  +++ K
Sbjct: 1024 MRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLK 1062



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 121/525 (23%), Positives = 219/525 (41%), Gaps = 96/525 (18%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           +AL  +  M+     P + ++++L+ AL  ++     + L + + ++GL P+  +  I +
Sbjct: 210 EALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICI 269

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
               +   + +A+  L R+      PDVVT   LI  LC  GK   A  LF K  A   +
Sbjct: 270 RILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHK 329

Query: 190 PN-------------------------------VIPNVICYASIIDGLCKDGFVNKVRVL 218
           P+                                +P+V+ +  +ID LCK G V++    
Sbjct: 330 PDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGT 389

Query: 219 FLDMKGRGIYPDAFVYNSLI----------------------------RVYCCAVNWEDA 250
              MK +G+ P+   YN+LI                              Y   +++   
Sbjct: 390 LDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGK 449

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
            G +  A++  E+        G++  P++++  + + SL +   +++AKE F  +K  G+
Sbjct: 450 SGESGKAIKTFEKMKTN----GIV--PNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGL 503

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
            PD + Y+ L+  Y   GR+DDA KL   +E  GC P+    N+LI++  K ++V+EA  
Sbjct: 504 APDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWK 563

Query: 371 LYGEMISMGVRP-------------DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
           ++  M  M + P                 + EA  LF+ +       +   FN L+D LC
Sbjct: 564 MFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLC 623

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKA 477
           K+  +  A ++  ++      P+V+TY  +I GL  E  +  A+                
Sbjct: 624 KNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVNYAF---------------- 667

Query: 478 IELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
             L H+M K+ + PD +T+  L   + KD    +   +   F+  
Sbjct: 668 -WLFHQM-KKVIYPDYVTLCTLLPGVIKDGRIEDAFRVAKEFVHH 710



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 141/533 (26%), Positives = 224/533 (42%), Gaps = 80/533 (15%)

Query: 67   ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
             L +A  FFN +      P   ++N L+          + I L   +   G  P+ V +N
Sbjct: 487  RLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIIN 546

Query: 127  ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
             L++   K   V +A+    R+     +P VVT   L+ GL  +G+  EA+ LF   +A 
Sbjct: 547  SLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIAD 606

Query: 187  DCRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKV 215
            DC PN I                               P+V+ Y ++I GL K+  VN  
Sbjct: 607  DCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVNYA 666

Query: 216  RVLFLDMKGRGIYPDAFVYNSLI-------------RV----------YCCAVNWEDAKG 252
              LF  MK + IYPD     +L+             RV          +     WED  G
Sbjct: 667  FWLFHQMK-KVIYPDYVTLCTLLPGVIKDGRIEDAFRVAKEFVHHVGDHADGSFWEDLMG 725

Query: 253  NTSAALELHEEFVNGNGEL-GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM-KSRGI 310
                  E+ +  +     +   IC  D +    ++  LCK      A  +FL + KS  I
Sbjct: 726  GILIEAEIGQSILFAESLVCNTICEDDSV-LIPLVKFLCKHGKAVDAYNVFLKLTKSFCI 784

Query: 311  IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
             P +  Y+SLIDG       + A  LF  +++ GC PD  +YN  +++  K  K++E   
Sbjct: 785  TPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFD 844

Query: 371  LYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
            LY EM+  G +P+             ++ + +A +L+  L +  F      +  L+DGL 
Sbjct: 845  LYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLL 904

Query: 418  KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM-EEKIRECLK 476
            K  RL  A + F+++  YG  PN   Y +++ G   +G +E A +L   M +E IR  LK
Sbjct: 905  KLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLK 964

Query: 477  AIELLHKMAKRYVKPDEITVSILEEL----LNKDENCHECMNLLPSFLSRNQE 525
            +  ++        K D+  +   EEL    L+ D  C+   NL+ + L R+Q 
Sbjct: 965  SYSIMVDCLCMVGKVDD-ALHYFEELKLSGLDPDLVCY---NLMINGLGRSQR 1013



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 143/314 (45%), Gaps = 39/314 (12%)

Query: 154  SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN 213
            +PDV T    +  L   GK  E   L+ + +   C+PN I + I    +I GL K   ++
Sbjct: 820  TPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNI----VIFGLVKSNSLD 875

Query: 214  KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
            K   L+ D+      P  + Y  LI         E+AK       +  EE ++       
Sbjct: 876  KAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAK-------QFFEEMLDYG----- 923

Query: 274  ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
             C P+   Y  ++N   K   V+ A ELF  M   GI PD+  YS ++D  C++G++DDA
Sbjct: 924  -CMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDA 982

Query: 334  RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAEL 393
               F  ++  G  PD   YN +IN   + ++VEEALSL+ EM + G+ P           
Sbjct: 983  LHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITP----------- 1031

Query: 394  FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
                       DL  +N L+  L  +  +  A +++++L   G EPNV TY  +I G  +
Sbjct: 1032 -----------DLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSM 1080

Query: 454  EGGIEKAYDLLPDM 467
             G  ++AY +   M
Sbjct: 1081 SGNPDRAYAVYKKM 1094



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 119/545 (21%), Positives = 224/545 (41%), Gaps = 56/545 (10%)

Query: 14  KVKPSSSLRNSKKPISLNSENEPSSLHS--NSVS---TVEEKTKLLKYLSENSKSGEVEL 68
           K KP S++ + +    L S ++P+   S  NSV+    V   T+   Y+ E  ++    +
Sbjct: 80  KRKPESTMSSEEVYRVLKSISDPNQAFSFFNSVAEMPRVIHTTETCNYVLEMLRAHR-RV 138

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
            D +  FN M        + ++ ++   L  +          E++  +G + +  S   L
Sbjct: 139 EDMVVVFNLMQKQIIKRSINTYLTIFKVLYIRGGLREAPVALEKMRKVGFVLNGYSYIGL 198

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           ++   K     +A     R++ +   P + T   L+  L  +       GL  +  +   
Sbjct: 199 IHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGL 258

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
           RPN+    IC    I  L + G +++   +   M   G  PD   Y  LI   C A    
Sbjct: 259 RPNIYTFTIC----IRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLN 314

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICH-PDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           +AK          E F+    ++    H PD ++Y ++++       +D  KE + +M++
Sbjct: 315 NAK----------ELFL----KMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEA 360

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            G +PDVV ++ LID  C +G++D+A      ++ +G  P+  +YNTLI    ++ +++E
Sbjct: 361 DGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDE 420

Query: 368 ALSLYGEMISMGVRPDNSCIL-------------EAAELFRTLHNTKFELDLTVFNCLVD 414
           AL L+  M S+G+       +             +A + F  +       ++   N  + 
Sbjct: 421 ALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLY 480

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE----- 469
            L +  RL  A E F  L + G  P+ +TY +++      G ++ A  LL +MEE     
Sbjct: 481 SLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDP 540

Query: 470 -------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                        K     +A ++  +M +  + P  +T + L   L K+    E   L 
Sbjct: 541 EVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALF 600

Query: 517 PSFLS 521
              ++
Sbjct: 601 KGMIA 605



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 121/525 (23%), Positives = 225/525 (42%), Gaps = 80/525 (15%)

Query: 47   VEEKTKLLKYLSENSKSGEV--------------ELNDALCFFNYMIHMQPTPFMPSFNS 92
            V++  KLL  + EN    EV               +++A   F  M  M+  P + ++N+
Sbjct: 523  VDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNT 582

Query: 93   LLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKV 152
            LL  L  +        L + +      P+ +S N L++C CK   V  A   L R+    
Sbjct: 583  LLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMN 642

Query: 153  FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDG-- 210
              PDV+T   +I GL  + +   A  LF +      +  + P+ +   +++ G+ KDG  
Sbjct: 643  CFPDVLTYNTVIYGLIKENRVNYAFWLFHQM-----KKVIYPDYVTLCTLLPGVIKDGRI 697

Query: 211  ---------FVNKVR-----VLFLDMKGRGIYPDAFVYNSLI---RVYCCAVNWEDAK-- 251
                     FV+ V        + D+ G GI  +A +  S++    + C  +  +D+   
Sbjct: 698  EDAFRVAKEFVHHVGDHADGSFWEDLMG-GILIEAEIGQSILFAESLVCNTICEDDSVLI 756

Query: 252  ------GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
                       A++ +  F+       +   P + +Y S+I+ L K  L + A  LF  M
Sbjct: 757  PLVKFLCKHGKAVDAYNVFLKLTKSFCIT--PSLEAYNSLIDGLLKARLTEMAWGLFYKM 814

Query: 306  KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
            K+ G  PDV  Y+  +D     G+I +   L+  +   GC P+T ++N +I    K   +
Sbjct: 815  KNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSL 874

Query: 366  EEALSLYGEMISMGVRP---------DNSCIL----EAAELFRTLHNTKFELDLTVFNCL 412
            ++A+ LY +++S    P         D    L    EA + F  + +     +  ++N L
Sbjct: 875  DKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNIL 934

Query: 413  VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA------------ 460
            ++G  K   + +A ELF+++ + G  P++ +Y++M+  LC+ G ++ A            
Sbjct: 935  MNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGL 994

Query: 461  ------YDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                  Y+L+ +   + +   +A+ L  +M  R + PD  T + L
Sbjct: 995  DPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNAL 1039



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 145/320 (45%), Gaps = 19/320 (5%)

Query: 71   ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
            A   F  M +   TP + ++N  L AL           L E +   G  P+ ++ NI++ 
Sbjct: 807  AWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIF 866

Query: 131  CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
               K   +  A      ++   FSP   T G LI GL   G+  EA   F + + + C  
Sbjct: 867  GLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGC-- 924

Query: 191  NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
              +PN   Y  +++G  K G V     LF  M   GI PD   Y+ ++   C        
Sbjct: 925  --MPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMV------ 976

Query: 251  KGNTSAALELHEEF-VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
             G    AL   EE  ++G         PD++ Y  +IN L +   V++A  LF +M++RG
Sbjct: 977  -GKVDDALHYFEELKLSG-------LDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRG 1028

Query: 310  IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
            I PD+  Y++LI    + G +++A K++  ++ +G  P+  +YN LI  +S     + A 
Sbjct: 1029 ITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDRAY 1088

Query: 370  SLYGEMISMGVRPDNSCILE 389
            ++Y +M+  G RP+     +
Sbjct: 1089 AVYKKMMVGGCRPNTGTFAQ 1108



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 107/420 (25%), Positives = 168/420 (40%), Gaps = 57/420 (13%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           L   GL PD ++ NILM C+ K   V DA   L  +      P+VV +  LI  L    +
Sbjct: 498 LKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADR 557

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
             EA  +F +         + P V+ Y +++ GL K+G V +   LF  M      P+  
Sbjct: 558 VDEAWKMFQRMKEM----KLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTI 613

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            +N+L+   C         G    AL++       N      C PDVL+Y ++I  L K+
Sbjct: 614 SFNTLLDCLC-------KNGEVDLALKMLFRMTEMN------CFPDVLTYNTVIYGLIKE 660

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS-IESEGCIPDTSS 351
             V+ A  LF  MK + I PD V   +L+ G    GRI+DA ++    +   G   D S 
Sbjct: 661 NRVNYAFWLFHQMK-KVIYPDYVTLCTLLPGVIKDGRIEDAFRVAKEFVHHVGDHADGSF 719

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNC 411
           +  L+       ++ +++     ++   +  D+S ++                       
Sbjct: 720 WEDLMGGILIEAEIGQSILFAESLVCNTICEDDSVLIP---------------------- 757

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI 471
           LV  LCK  +   A+ +F KL +                 CI   +E AY+ L D   K 
Sbjct: 758 LVKFLCKHGKAVDAYNVFLKLTK---------------SFCITPSLE-AYNSLIDGLLKA 801

Query: 472 RECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLTR 531
           R    A  L +KM      PD  T ++  + L K     E  +L    L R  + + +T 
Sbjct: 802 RLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITH 861


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 169/366 (46%), Gaps = 41/366 (11%)

Query: 82  QPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDA 141
           +  P   ++NSL+  L   +       L E +   G +PD  +   L+  FCK     DA
Sbjct: 49  EEVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDA 108

Query: 142 FVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYAS 201
                +++ + F PDVVT  CLI GLC +G+  EA  LF + +      + +PN + Y S
Sbjct: 109 LRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSG---SCMPNTVTYNS 165

Query: 202 IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261
           +I G C+ G +++   L   M   G  PD   Y +L+  +C     +DA           
Sbjct: 166 LISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAY---------- 215

Query: 262 EEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
            + +N     G+   P+V+++ S+++ LC++  +  A  +  +M+ +   P V  Y++++
Sbjct: 216 -DLLNQMTRKGLT--PNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTIL 272

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
           DGYC + ++++ARK    +E   C P+  S+N +I    K+ +  EA+ L  E       
Sbjct: 273 DGYCRVNQLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCN 330

Query: 382 PDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK-LPRYGPEPN 440
           P                      D+ ++  ++D LC+  ++  A  +++K L   G  PN
Sbjct: 331 P----------------------DVVMYTTVIDVLCREKKVDEACRVYRKMLEEPGCLPN 368

Query: 441 VVTYTV 446
            +TY+ 
Sbjct: 369 SITYST 374



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 150/327 (45%), Gaps = 27/327 (8%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
           P  VT   LI GLC   + +EA  L  + V   C    IP++  Y ++I G CK    + 
Sbjct: 52  PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGC----IPDIFTYTTLITGFCKSKKSDD 107

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
              +F  +  RG  PD   Y+ LI   C        +G    A++L    +         
Sbjct: 108 ALRVFEQLVARGFRPDVVTYSCLIDGLC-------KEGRLKEAIDLFGRMIKSGS----- 155

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
           C P+ ++Y S+I+  C+   +D+A  L   M   G  PDVV Y++L++G+C + R+DDA 
Sbjct: 156 CMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAY 215

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNS 385
            L   +  +G  P+  ++ +L++   +  ++ +A+ + GEM      P         D  
Sbjct: 216 DLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGY 275

Query: 386 CILEAAELFRT--LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
           C +   E  R   L       ++  FN ++ GLCK  R   A EL ++  R    P+VV 
Sbjct: 276 CRVNQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVM 335

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEK 470
           YT +I  LC E  +++A  +   M E+
Sbjct: 336 YTTVIDVLCREKKVDEACRVYRKMLEE 362



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 145/320 (45%), Gaps = 48/320 (15%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           ++A      M++    P + ++ +L+      K   + + + E+L   G  PD V+ + L
Sbjct: 71  SEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCL 130

Query: 129 MNCFCKMIGVSDAFVALGRILRK-VFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++  CK   + +A    GR+++     P+ VT   LI G C  GK  EA  L  +     
Sbjct: 131 IDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETG 190

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
             P+V+                               PNV+ + S++DGLC++  ++   
Sbjct: 191 SSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAV 250

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            +  +M+ +   P  + YN+++  YC     E+A+        L E          + C 
Sbjct: 251 HILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEAR-----KFMLEE----------MDCP 295

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+V+S+  +I  LCK     +A EL  + + R   PDVV+Y+++ID  C   ++D+A ++
Sbjct: 296 PNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDVLCREKKVDEACRV 355

Query: 337 FVS-IESEGCIPDTSSYNTL 355
           +   +E  GC+P++ +Y+T 
Sbjct: 356 YRKMLEEPGCLPNSITYSTF 375



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 124/258 (48%), Gaps = 21/258 (8%)

Query: 65  EVELNDALCFFNYMIHMQP-TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV 123
           E  L +A+  F  MI      P   ++NSL+            + L ER+   G  PD V
Sbjct: 137 EGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVV 196

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           +   LMN FCK+  + DA+  L ++ RK  +P+VVT   L+ GLC + + ++A  +  + 
Sbjct: 197 TYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEM 256

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
               C P V      Y +I+DG C+   + + R   L+       P+   +N +IR   C
Sbjct: 257 RRKSCSPTVYT----YNTILDGYCRVNQLEEARKFMLEEM--DCPPNVVSFNIMIRGL-C 309

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
            VN       +S A+EL EE           C+PDV+ Y ++I+ LC++  VD+A  ++ 
Sbjct: 310 KVN------RSSEAMELVEEARRRR------CNPDVVMYTTVIDVLCREKKVDEACRVYR 357

Query: 304 DM-KSRGIIPDVVVYSSL 320
            M +  G +P+ + YS+ 
Sbjct: 358 KMLEEPGCLPNSITYSTF 375



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 111/225 (49%), Gaps = 41/225 (18%)

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
           +P  V Y+SLI G C   R  +A  L   +   GCIPD  +Y TLI  + K +K ++AL 
Sbjct: 51  VPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALR 110

Query: 371 LYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
           ++ ++++ G RP                      D+  ++CL+DGLCK  RL+ A +LF 
Sbjct: 111 VFEQLVARGFRP----------------------DVVTYSCLIDGLCKEGRLKEAIDLFG 148

Query: 431 KLPRYGP-EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KI 471
           ++ + G   PN VTY  +I G C  G +++A +LL  M E                  K+
Sbjct: 149 RMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKL 208

Query: 472 RECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                A +LL++M ++ + P+ +T + L + L ++    + +++L
Sbjct: 209 ARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHIL 253


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 175/366 (47%), Gaps = 36/366 (9%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ V+ +IL++  C+   + +AF     ++ K   P   T   LI+  C  G   +A  +
Sbjct: 240 PNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKM 299

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             +     C    +PNV  Y  +ID LC++G + +   +F  M   G+ P    +N+LI 
Sbjct: 300 LDEMATKAC----VPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALIN 355

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            YC        +G   +A +L      GN      C P++ +Y  ++  LC+   V K+ 
Sbjct: 356 GYC-------KEGWVVSAFQLLSVMEKGN------CKPNIRTYNELMEGLCR---VSKSY 399

Query: 300 ELFLDMK---SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           + FL ++     G++PD V Y+ L+DG+C  G+++ A  +F S+ S G  PD  ++  LI
Sbjct: 400 KAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALI 459

Query: 357 NSYSKIEKVEEALSLYGEMISMGVR---------PDNSCILEAAE----LFRTLHNTKFE 403
           +   K+ ++E+A  + G M+  G+           D  C +  A+    LF  +   +  
Sbjct: 460 DGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCL 519

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
                FNC +D L K ++L  A  +  K+ +YG  P+VVT+T++I G C  G    +  +
Sbjct: 520 TTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKM 579

Query: 464 LPDMEE 469
           L  M++
Sbjct: 580 LERMKQ 585



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/414 (26%), Positives = 187/414 (45%), Gaps = 45/414 (10%)

Query: 59  ENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFIC--LSERLNTI 116
           E+S++G V+L  AL   + M  +      P +++LL  LA  K  + F+   +  R+   
Sbjct: 111 EDSENGVVKLMGAL---DGMTELGFRLSYPCYSTLLMCLA--KLNMGFVAFLVYRRMVNE 165

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G +   +    ++N  CK   V  A +   ++LR  F  D      L+   C +    EA
Sbjct: 166 GFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEA 225

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             +F K        N  PN + Y+ +I GLC+ G + +   L  +M  +G  P    Y  
Sbjct: 226 FRVFEKMSK---EENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTV 282

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI+  C         G T  A+++ +E           C P+V +Y  +I+ LC++  ++
Sbjct: 283 LIKAKC-------DIGMTDKAMKMLDEMATK------ACVPNVHTYTILIDRLCREGKIE 329

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A  +F  M   G+ P ++ +++LI+GYC  G +  A +L   +E   C P+  +YN L+
Sbjct: 330 EANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELM 389

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
               ++ K  +A  L   ++  G+ PD                         +N LVDG 
Sbjct: 390 EGLCRVSKSYKAFLLLRRVVDNGLLPDR----------------------VTYNILVDGF 427

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           CK  +L  A+ +F  +   G EP+  T+T +I GLC  G +E+A  +L  M +K
Sbjct: 428 CKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKK 481



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/370 (21%), Positives = 170/370 (45%), Gaps = 30/370 (8%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           + + T   +P+  +  IL++  C+   + +A     ++L+    P ++T   LI G C +
Sbjct: 301 DEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKE 360

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G    A  L +     +C+PN+      Y  +++GLC+     K  +L   +   G+ PD
Sbjct: 361 GWVVSAFQLLSVMEKGNCKPNIRT----YNELMEGLCRVSKSYKAFLLLRRVVDNGLLPD 416

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
              YN L+  +C        +G  + A  +     +   E      PD  ++ ++I+ LC
Sbjct: 417 RVTYNILVDGFC-------KEGQLNMAFNIFNSMNSAGLE------PDGFTFTALIDGLC 463

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K   +++A  +   M  +GI  D V +++LIDG+C +G+  D   LF ++    C+    
Sbjct: 464 KLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAH 523

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCILEAA----------ELFRTL 397
           ++N  +++  K  K+ EA ++ G+M+  G+ P    ++ ++E            ++   +
Sbjct: 524 TFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERM 583

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                  ++  +  +++GLC + R+  A  +   +  +G  PN  TY V++      G +
Sbjct: 584 KQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRL 643

Query: 458 EKAYDLLPDM 467
           ++A+ ++  M
Sbjct: 644 DRAFQIVSTM 653



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 163/351 (46%), Gaps = 35/351 (9%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +N+ GL PD  +   L++  CK+  +  A   LG +++K  S D VT   LI G C  GK
Sbjct: 443 MNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGK 502

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
             +   LF   V   C    +     +   +D L KD  +N+   +   M   G+ P   
Sbjct: 503 AKDVCFLFENMVENRC----LTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVV 558

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            +  LI  +C A       G T+ +L++ E            C P+V +Y  IIN LC +
Sbjct: 559 THTILIEGHCRA-------GETALSLKMLERMKQAG------CSPNVYTYTIIINGLCNN 605

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             V++A+ +   M S G+ P+   Y+ L+  +   GR+D A ++  ++   GC P++  Y
Sbjct: 606 GRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIY 665

Query: 353 NTLINSY--SKIEKVEEALSLYGEMISMGVRP---DNSCILEAAELFRTL---HNTKFEL 404
           + L++ +  S       ALS  G++ +  +     DN+C+  ++ +FR +   H  K   
Sbjct: 666 SALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCL--SSHVFRLMDVDHALKIRD 723

Query: 405 DLT--------VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
           ++         ++N LV GLCK  R+  A +L + + ++G  P+    +++
Sbjct: 724 EIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAISSII 774



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 166/389 (42%), Gaps = 39/389 (10%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E ++ +A   F  M+     P + +FN+L+     + + V+   L   +      P+  +
Sbjct: 325 EGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRT 384

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N LM   C++     AF+ L R++     PD VT   L+ G C +G+   A  +F    
Sbjct: 385 YNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMN 444

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
           +      + P+   + ++IDGLCK G + +   +   M  +GI  D   + +LI  +C  
Sbjct: 445 S----AGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHC-- 498

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                  G       L E  V         C     ++   +++L KD  +++A  +   
Sbjct: 499 -----KIGKAKDVCFLFENMVENR------CLTTAHTFNCFLDALGKDYKLNEANAMLGK 547

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M   G++P VV ++ LI+G+C  G    + K+   ++  GC P+  +Y  +IN      +
Sbjct: 548 MMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGR 607

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
           VEEA ++   M S GV P+              H T        +  LV    K+ RL  
Sbjct: 608 VEEAETILFSMSSFGVSPN--------------HFT--------YAVLVKAHVKAGRLDR 645

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCI 453
           A+++   + + G +PN   Y+ ++ G  +
Sbjct: 646 AFQIVSTMVKNGCQPNSHIYSALLSGFVL 674



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 141/330 (42%), Gaps = 31/330 (9%)

Query: 72  LCF-FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFI-CLSERLNTIGLLPDFVSLNILM 129
           +CF F  M+  +      +FN  L AL GK Y +N    +  ++   GL+P  V+  IL+
Sbjct: 506 VCFLFENMVENRCLTTAHTFNCFLDAL-GKDYKLNEANAMLGKMMKYGLVPSVVTHTILI 564

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
              C+    + +   L R+ +   SP+V T   +I GLC  G+  EA  +     +F   
Sbjct: 565 EGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSF--- 621

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
             V PN   YA ++    K G +++   +   M   G  P++ +Y++L+  +  +     
Sbjct: 622 -GVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIG 680

Query: 250 AKGNTSA----ALELHEEFVNGN-------------------GELGVICHPDVLSYCSII 286
           A+  +S     A  L  E  + N                    E+     P    Y  ++
Sbjct: 681 ARALSSTGDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVPTEDLYNFLV 740

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
             LCK+  + +A +L  DM   G+ PD  + SS+I+ YC   + D+  +    +     +
Sbjct: 741 VGLCKEGRIIEADQLTQDMVKHGLFPDKAI-SSIIEHYCKTCKYDNCLEFMKLVLDNKFV 799

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
           P  +SY  +I+      +V+EA  L  +++
Sbjct: 800 PSFASYCWVIHGLRNEGRVQEAQKLVSDLV 829


>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
          Length = 484

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 179/391 (45%), Gaps = 35/391 (8%)

Query: 87  MPSFNSLLGALAG-KKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVAL 145
           MP+++ L+  L    + Y  ++ L +     G+ P+    N+LM    +   ++ A    
Sbjct: 82  MPAWSDLMNRLPSVPEAYAFYLHLLD----AGVPPEARQFNMLMRDMIRSGKLASARNVF 137

Query: 146 GRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDG 205
             +LR+   P VVT   L+ G+C       A+ L         +  + P+V  Y + I G
Sbjct: 138 DEMLRRGVQPTVVTFNTLMSGMCKASDLNNANALR----GLMAKAGIAPDVYTYGAFIQG 193

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
           LCK G +     +F +M  RG+ P+  V  +LI  +C        +G+ +A LEL  E  
Sbjct: 194 LCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHC-------KEGDVTAGLELRWEMA 246

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
                 GV    D+++Y +++N  C+   +  A ++  +M+  G+ PD V Y++LIDG C
Sbjct: 247 T----RGV--KADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCC 300

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
             G +D A ++   +  EG   D  +Y  LI+  SK  +  +A  +  EM+  G++PDN+
Sbjct: 301 KEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNT 360

Query: 386 CILEAAELF-------------RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
                 + F             + + N      +  +N +++G C   ++++A  L   +
Sbjct: 361 TYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAM 420

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
              G  PN +TY +++ G C  G +    +L
Sbjct: 421 LNIGVCPNDITYNILLDGHCKHGKVRDTEEL 451



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 149/343 (43%), Gaps = 52/343 (15%)

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
           V P    +  ++  + + G +   R +F +M  RG+ P    +N+L+   C A       
Sbjct: 110 VPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKA------- 162

Query: 252 GNTSAALELHEEFVNGNGELGVICH----PDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
                      +  N N   G++      PDV +Y + I  LCK   +  A E+F +M  
Sbjct: 163 ----------SDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCE 212

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           RG+ P+ VV ++LID +C  G +    +L   + + G   D  +YN L+N + ++  ++ 
Sbjct: 213 RGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKA 272

Query: 368 ALSLYGEMISMGVRPD--------NSCILE-----AAELFRTLHNTKFELDLTVFNCLVD 414
           A  +  EM   G++PD        + C  E     A E+ + + +    LD   +  L+ 
Sbjct: 273 ANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALIS 332

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK---- 470
           GL K+ R   A  +  ++   G +P+  TYT++I   C  G ++  +  L +M+ K    
Sbjct: 333 GLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNP 392

Query: 471 --------------IRECLKAIELLHKMAKRYVKPDEITVSIL 499
                         + +   A  LL+ M    V P++IT +IL
Sbjct: 393 GIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNIL 435



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/371 (22%), Positives = 159/371 (42%), Gaps = 64/371 (17%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           +A  F+ +++     P    FN L+  +       +   + + +   G+ P  V+ N LM
Sbjct: 97  EAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLM 156

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           +  CK   +++A    G + +   +PDV T G  I+GLC  G+  +A  +F +     C 
Sbjct: 157 SGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEM----CE 212

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
             + PN +   ++ID  CK+G V     L  +M  RG+  D   YN+L+  +C   + + 
Sbjct: 213 RGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKA 272

Query: 250 A----------------------------KGNTSAALELHEE---------------FVN 266
           A                            +G    A+E+ +E                ++
Sbjct: 273 ANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALIS 332

Query: 267 GNGELG-------VIC-------HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
           G  + G       ++C        PD  +Y  +I++ CK+  V    +   +M+++G  P
Sbjct: 333 GLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNP 392

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS---YSKIEKVEEAL 369
            +V Y+ +++G+C +G++ +A  L  ++ + G  P+  +YN L++    + K+   EE  
Sbjct: 393 GIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDGHCKHGKVRDTEELK 452

Query: 370 SLYGEMISMGV 380
           S  G +   GV
Sbjct: 453 SAKGMVSDFGV 463



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 95/223 (42%), Gaps = 40/223 (17%)

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           V +A   +L +   G+ P+   ++ L+      G++  AR +F  +   G  P   ++NT
Sbjct: 95  VPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNT 154

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           L++   K   +  A +L G M   G+ P                      D+  +   + 
Sbjct: 155 LMSGMCKASDLNNANALRGLMAKAGIAP----------------------DVYTYGAFIQ 192

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE----- 469
           GLCK+ R++ A E+F+++   G  PN V  T +I   C EG +    +L  +M       
Sbjct: 193 GLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKA 252

Query: 470 -------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                        ++R+   A +++ +M K  +KPD++T + L
Sbjct: 253 DLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTL 295


>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
          Length = 735

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 122/466 (26%), Positives = 198/466 (42%), Gaps = 88/466 (18%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142
           P P +   N+LL ALA  + + +   L+ R+    L     +   L+N +C    +  A 
Sbjct: 37  PLPPLRCLNTLLMALARHRMFPDMESLASRMPARNLR----TYTTLINAYCLAGDIPAAK 92

Query: 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI--------- 193
             L  +L    +PD       + G C  G  T A  +F       C              
Sbjct: 93  QHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGL 152

Query: 194 ----------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
                                 P+   YA+++ GLC+ G   +  VL  +    G  P+ 
Sbjct: 153 LGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNI 212

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
            VYN+LI  YC A       G    AL++ E      G  G  C P+V +Y  +I+ LCK
Sbjct: 213 VVYNALIDGYCNA-------GEMEHALKVFE------GMDGNRCSPNVRTYTELIHGLCK 259

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
              V++A  LF  M   G+ P+VV Y++LI G C  G +  A +L   +E+ G +P+  +
Sbjct: 260 SGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWT 319

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNC 411
           ++ LI++  K EKVEEA    G ++  GV+ +                        V+  
Sbjct: 320 FSVLIDALCKREKVEEAQLFLGSLVKKGVKVNE----------------------VVYTS 357

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK- 470
           L+DGLCK+ ++ +A EL +K+   G  P+  +Y+ +I GLC +  + +A  +L DM EK 
Sbjct: 358 LIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKG 417

Query: 471 -----------IRECLKAI------ELLHKMAKRYVKPDEITVSIL 499
                      I E ++ +      ++  KM    + PD +T ++ 
Sbjct: 418 IQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVF 463



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 116/426 (27%), Positives = 178/426 (41%), Gaps = 42/426 (9%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E+  AL  F  M   + +P + ++  L+  L         + L  R+   GL P+ V+  
Sbjct: 227 EMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYT 286

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+   C    +  AF  L  +      P+  T   LI  LC + K  EA       V  
Sbjct: 287 ALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLV-- 344

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             +  V  N + Y S+IDGLCK G ++    L   M   G  PDA  Y+SLI   C    
Sbjct: 345 --KKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLC---- 398

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
               K  + A L L +       E G+   P  ++Y  II+ L ++V  +  K++F  M 
Sbjct: 399 --RQKKLSQATLMLEDMM-----EKGIQASP--VTYTIIIDELVREVGSEGPKKIFDKMI 449

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           + GI PD+V Y+  +  YC  GR++DA  + V +   G  P+  +YNTLI  Y+ +  V 
Sbjct: 450 ATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVS 509

Query: 367 EALSLYGEMISMGVRP------------------DNSC-ILEAAE------LFRTLHNTK 401
           +A S +  M+  G +P                  DNS  I + A+      L   +   +
Sbjct: 510 QAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLEDITERQ 569

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
             L   +++C +  LC+  RL  A   F  +      P+   YT +I   C    +  A 
Sbjct: 570 LPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSIIDCCCRLKILTDAL 629

Query: 462 DLLPDM 467
            LL  M
Sbjct: 630 TLLDSM 635



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/431 (22%), Positives = 191/431 (44%), Gaps = 44/431 (10%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           KSG+VE   A+  F+ M+     P + ++ +L+     + +      L   + T GL+P+
Sbjct: 259 KSGKVE--RAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPN 316

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             + ++L++  CK   V +A + LG +++K    + V    LI GLC  GK   A  L  
Sbjct: 317 DWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQ 376

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           K ++       +P+   Y+S+IDGLC+   +++  ++  DM  +GI      Y  +I   
Sbjct: 377 KMIS----EGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDEL 432

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
              V  E  K       ++ ++ +          +PD+++Y   + S C++  ++ A+ +
Sbjct: 433 VREVGSEGPK-------KIFDKMIATG------INPDIVTYTVFVRSYCEEGRMEDAESM 479

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
            + M  RG+ P++V Y++LI GY  +G +  A   F  +  +G  P+  SY  L+    K
Sbjct: 480 IVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVK 539

Query: 362 IEKVEEALSLY--GEMISMGVRPDN-------------SCIL----------EAAELFRT 396
               + ++ ++   +M  + V  ++             SC +          EA   F  
Sbjct: 540 KSSSDNSVDIWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMG 599

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           + N        V+  ++D  C+   L  A  L   + + G  P++ +Y ++I  LC  G 
Sbjct: 600 MQNANLTPSEDVYTSIIDCCCRLKILTDALTLLDSMTKSGYLPHLESYRIIISSLCEGGN 659

Query: 457 IEKAYDLLPDM 467
              A ++  D+
Sbjct: 660 FRTAKEVFGDL 670



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 112/428 (26%), Positives = 181/428 (42%), Gaps = 57/428 (13%)

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
           LP    LN L+    +       F  +  +  ++ + ++ T   LI   C+ G    A  
Sbjct: 38  LPPLRCLNTLLMALAR----HRMFPDMESLASRMPARNLRTYTTLINAYCLAGDIPAAKQ 93

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
             T  +       + P+   Y S + G C+ G +     +F+ M  RG    AF Y +L+
Sbjct: 94  HLTSLL----HAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALL 149

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
                A       G    A+ +   FV    +    C PD   Y ++++ LC+    ++A
Sbjct: 150 HGLLGA-------GMVREAMAV---FVGMRAD---SCAPDTHVYATMVHGLCEAGRTEEA 196

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
           + L  +  S G  P++VVY++LIDGYC  G ++ A K+F  ++   C P+  +Y  LI+ 
Sbjct: 197 EVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHG 256

Query: 359 YSKIEKVEEALSLYGEMISMGVRPD------------NSCILEAAELFRTLH----NTKF 402
             K  KVE A+ L+  M+  G+ P+            N   L+ A  FR LH    N   
Sbjct: 257 LCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCA--FRLLHLMETNGLV 314

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
             D T F+ L+D LCK  ++  A      L + G + N V YT +I GLC  G I+ A  
Sbjct: 315 PNDWT-FSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAAD- 372

Query: 463 LLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
                           EL+ KM      PD  + S L + L + +   +   +L   + +
Sbjct: 373 ----------------ELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEK 416

Query: 523 NQEESKLT 530
             + S +T
Sbjct: 417 GIQASPVT 424



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 142/316 (44%), Gaps = 9/316 (2%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G+++  D L     MI     P   S++SL+  L  +K       + E +   G+   
Sbjct: 364 KTGKIDAADEL--MQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQAS 421

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+  I+++   + +G         +++    +PD+VT    +R  C +G+  +A  +  
Sbjct: 422 PVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIV 481

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           + V       V PN++ Y ++I G    G V++    F  M G+G  P+   Y  L+R+ 
Sbjct: 482 QMV----DRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLV 537

Query: 242 CCAVNWEDAKGNTSAA-LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
               + +++      A ++  +  +    E  +    D+  Y   I  LC+   +++AK 
Sbjct: 538 VKKSSSDNSVDIWKIADMKDLQVLLEDITERQLPLAADI--YSCFIRCLCRVDRLEEAKH 595

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
            F+ M++  + P   VY+S+ID  C +  + DA  L  S+   G +P   SY  +I+S  
Sbjct: 596 FFMGMQNANLTPSEDVYTSIIDCCCRLKILTDALTLLDSMTKSGYLPHLESYRIIISSLC 655

Query: 361 KIEKVEEALSLYGEMI 376
           +      A  ++G+++
Sbjct: 656 EGGNFRTAKEVFGDLL 671


>gi|356527777|ref|XP_003532484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Glycine max]
          Length = 583

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 116/479 (24%), Positives = 206/479 (43%), Gaps = 61/479 (12%)

Query: 41  SNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGK 100
           +NS  TV  +TKL+     N+  G+ + ++A   FN +      P + ++ +L+ AL  +
Sbjct: 16  NNSCQTVHARTKLM-----NTLIGKGKPHEAQAVFNNLTEEGHKPTLITYTTLVAALTRQ 70

Query: 101 KYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTL 160
           K + +   L  ++   G+ PD + LN ++N F +   V +A     ++      P   T 
Sbjct: 71  KRFKSIPALLSKVADNGMKPDSILLNAMINAFSESGKVDEAMKIFQKMKEYGCKPTTSTY 130

Query: 161 GCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFL 220
             LI+G  + G+  E+  L  + +  D   NV PN   Y  +I   C    + +   +  
Sbjct: 131 NTLIKGFGIAGRPYESMKLL-EMMGQD--ENVKPNDRTYNILIQAWCTKKKLEEAWNVLH 187

Query: 221 DMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVL 280
            M   GI PD   YN++ R Y          G T  A  L  +          I  P+  
Sbjct: 188 KMVASGIQPDVVTYNTMARAYA-------QNGETERAERLILKMPYN------IVKPNER 234

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
           +   II+  CK+  + +A      MK  G+ P+ VV++SLI GY      +   +    +
Sbjct: 235 TCGIIISGYCKEGNMPEALRFLYRMKELGVDPNPVVFNSLIKGYLDTTDTNGVDEALTLM 294

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNT 400
           E  G  PD  +++T++N++S    +E    ++ +M+  G+ P                  
Sbjct: 295 EEFGIKPDVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGIEP------------------ 336

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
               D+  ++ L  G  ++ + R A  L   + +YG +PNVV +T +I G C  G +++A
Sbjct: 337 ----DIHAYSILAKGYVRAGQPRKAEALLTSMSKYGVQPNVVIFTTIISGWCAAGKMDRA 392

Query: 461 YDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEE 501
           + L   M E                  + ++  KA ELL  M +R V P+  T+ ++ +
Sbjct: 393 FRLCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEELLTTMEERGVVPEMSTMQLVAD 451



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 165/374 (44%), Gaps = 57/374 (15%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGA--LAGKKYYVNFICLSERLNTIGL 118
           S+SG+V+  +A+  F  M      P   ++N+L+    +AG+ Y  +   L        +
Sbjct: 103 SESGKVD--EAMKIFQKMKEYGCKPTTSTYNTLIKGFGIAGRPYE-SMKLLEMMGQDENV 159

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
            P+  + NIL+  +C    + +A+  L +++     PDVVT   + R     G+   A  
Sbjct: 160 KPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETERAER 219

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           L  K      +PN      C   II G CK+G + +       MK  G+ P+  V+NSLI
Sbjct: 220 LILKMPYNIVKPN---ERTC-GIIISGYCKEGNMPEALRFLYRMKELGVDPNPVVFNSLI 275

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
           + Y   ++  D  G    AL L EEF       G+   PDV+++ +I+N+     L++  
Sbjct: 276 KGY---LDTTDTNG-VDEALTLMEEF-------GI--KPDVVTFSTIMNAWSSAGLMENC 322

Query: 299 KELFLDMKSRGIIPD-----------------------------------VVVYSSLIDG 323
           +E+F DM   GI PD                                   VV+++++I G
Sbjct: 323 EEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAEALLTSMSKYGVQPNVVIFTTIISG 382

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           +C  G++D A +L   +   G  P+  +Y TLI  Y + ++  +A  L   M   GV P+
Sbjct: 383 WCAAGKMDRAFRLCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEELLTTMEERGVVPE 442

Query: 384 NSCILEAAELFRTL 397
            S +   A+ +R +
Sbjct: 443 MSTMQLVADAWRAI 456



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 106/242 (43%), Gaps = 42/242 (17%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P +++Y +++ +L +         L   +   G+ PD ++ +++I+ +   G++D+A K+
Sbjct: 55  PTLITYTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMINAFSESGKVDEAMKI 114

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM--GVRPDNSCILEAAELF 394
           F  ++  GC P TS+YNTLI  +    +  E++ L  EM+     V+P++          
Sbjct: 115 FQKMKEYGCKPTTSTYNTLIKGFGIAGRPYESMKLL-EMMGQDENVKPND---------- 163

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
           RT            +N L+   C   +L  AW +  K+   G +P+VVTY  M       
Sbjct: 164 RT------------YNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQN 211

Query: 455 GGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMN 514
           G  E+A                   L+ KM    VKP+E T  I+     K+ N  E + 
Sbjct: 212 GETERAE-----------------RLILKMPYNIVKPNERTCGIIISGYCKEGNMPEALR 254

Query: 515 LL 516
            L
Sbjct: 255 FL 256



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 95/232 (40%), Gaps = 17/232 (7%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           R+  +G+ P+ V  N L+  +      +    AL  +      PDVVT   ++      G
Sbjct: 258 RMKELGVDPNPVVFNSLIKGYLDTTDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWSSAG 317

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
                  +F   V    +  + P++  Y+ +  G  + G   K   L   M   G+ P+ 
Sbjct: 318 LMENCEEIFNDMV----KAGIEPDIHAYSILAKGYVRAGQPRKAEALLTSMSKYGVQPNV 373

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
            ++ ++I  +C A       G    A  L E+      E+G    P++ +Y ++I    +
Sbjct: 374 VIFTTIISGWCAA-------GKMDRAFRLCEKM----HEMGT--SPNLKTYETLIWGYGE 420

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
                KA+EL   M+ RG++P++     + D +  +G   +A ++    E E
Sbjct: 421 AKQPWKAEELLTTMEERGVVPEMSTMQLVADAWRAIGLFKEANRILNGSEEE 472


>gi|302763357|ref|XP_002965100.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
 gi|300167333|gb|EFJ33938.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
          Length = 603

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 122/485 (25%), Positives = 204/485 (42%), Gaps = 83/485 (17%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            L+DAL FF   I     P + SFN LL   A +  +     L   + + G+  +  +  
Sbjct: 111 HLSDALGFFQSSI---SEPNVSSFNILLRGFAARDDFEVVNALLREMKSRGITSNGATHG 167

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           ++++  C    +  A      +      P + T   L+ GLC   K   A  +F + +  
Sbjct: 168 VILSALCARRDLDKAVSYFNSVSPNKCEPTLFTYTVLVDGLCKAHKVERACDVFEEMI-- 225

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC-CAV 245
             R    P++I Y+S+IDGL K G V++ R L   M  RG  P A  Y S++   C C  
Sbjct: 226 --RKGYKPDIIAYSSLIDGLSKAGRVDEARKLVDLMVARGPPPTAVAYTSIVAGLCKCGR 283

Query: 246 NWEDAK---------------------------GNTSAALELHEEFVNGNGELGVICHPD 278
             E  K                           G    A  + EE  + +      C PD
Sbjct: 284 IQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAVMEEMADRD------CAPD 337

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
            +SY   I +L      ++A+++F  M  +G  PD+  Y  +ID +C  G +  A  +  
Sbjct: 338 TISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLR 397

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398
            ++     P+   Y  +++ + K  ++EEAL LY  ++  G+ P                
Sbjct: 398 LMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPST-------------- 443

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP--EPNVVTYTVMICGLCIEGG 456
                     +N +++ LCK  ++  A EL +++ R     EP++VTY+++I GL   G 
Sbjct: 444 --------VTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGM 495

Query: 457 IEKAYDLLPDMEEK--IRECL----------------KAIELLHKMAKRYVKPDEITVSI 498
            E+A+DLL +M +   I +C                 +A+ELL +M K  + PD+ T   
Sbjct: 496 EERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGT 555

Query: 499 LEELL 503
           L ++L
Sbjct: 556 LVQIL 560



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 175/396 (44%), Gaps = 44/396 (11%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           SK+G V  ++A    + M+   P P   ++ S++  L         +   + +    L P
Sbjct: 244 SKAGRV--DEARKLVDLMVARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRP 301

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
              + + ++  +  M  V  AF  +  +  +  +PD ++    I  L   G+  EA  +F
Sbjct: 302 RVDTYSFIVTGYIGMGKVEKAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVF 361

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
              V   C+P++      Y  IID  CK+G +     +   M    + P+ ++Y  ++  
Sbjct: 362 ETMVEKGCKPDMH----TYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDG 417

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
           +  +   E+A       LEL++  +      G++  P  ++Y ++IN+LCK   +D+A E
Sbjct: 418 FVKSSRLEEA-------LELYQRILKD----GIL--PSTVTYNTVINALCKLKKMDEALE 464

Query: 301 LFLDMKSRG--IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
           L  +M+ R   + P +V YS +I G   +G  + A  L   +   G IPD  +Y +LI +
Sbjct: 465 LLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQT 524

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
            +   KV  A+ L  EM+  G+ PD+                        +  LV  LC+
Sbjct: 525 LAGAGKVSRAMELLEEMLKAGIFPDDH----------------------TYGTLVQILCR 562

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
           S  + +AW+L +++ R G  PN  T+  +  G  ++
Sbjct: 563 S-DVDAAWDLLQEMMRNGHTPNEFTFKAVEKGFRLQ 597



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 94/413 (22%), Positives = 169/413 (40%), Gaps = 63/413 (15%)

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD 209
           R  FS  + T   L+  L   G  ++A G F   ++        PNV  +  ++ G    
Sbjct: 89  RPGFSHTLFTRNSLLLALVRGGHLSDALGFFQSSISE-------PNVSSFNILLRGFAAR 141

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
                V  L  +MK RGI  +   +  ++   C   + + A    ++        V+ N 
Sbjct: 142 DDFEVVNALLREMKSRGITSNGATHGVILSALCARRDLDKAVSYFNS--------VSPNK 193

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
                C P + +Y  +++ LCK   V++A ++F +M  +G  PD++ YSSLIDG    GR
Sbjct: 194 -----CEPTLFTYTVLVDGLCKAHKVERACDVFEEMIRKGYKPDIIAYSSLIDGLSKAGR 248

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM-------------- 375
           +D+ARKL   + + G  P   +Y +++    K  +++EA+    EM              
Sbjct: 249 VDEARKLVDLMVARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSF 308

Query: 376 -----ISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
                I MG       ++E       + +     D   +   ++ L    R   A ++F+
Sbjct: 309 IVTGYIGMGKVEKAFAVME------EMADRDCAPDTISYTMFIEALYSIGRREEAEKVFE 362

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIR 472
            +   G +P++ TY ++I   C EG +  A  +L  M++                  K  
Sbjct: 363 TMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSS 422

Query: 473 ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQE 525
              +A+EL  ++ K  + P  +T + +   L K +   E + LL     R +E
Sbjct: 423 RLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEE 475


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 119/471 (25%), Positives = 205/471 (43%), Gaps = 65/471 (13%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + +FNSLL  L   +       + E +   G +PD  +   L +   K   V  +   
Sbjct: 285 PTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITL 344

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
               +RK       T   L+  LC +G   +A  +  KF+       + P  + + +I++
Sbjct: 345 SEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFL----ENGLAPVGVFFNTIVN 400

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG--------NTSA 256
           G C+ G +NK       M+  G+ P+   YNSL++ +C   N E+A+             
Sbjct: 401 GYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLP 460

Query: 257 ALELHEEFVNGNGELGVI--------------CHPDVLSYCSIINSLCKDVLVDKAKELF 302
            +E +   ++G G   +                 P+V+SY  +IN LCKD  + +A+ + 
Sbjct: 461 NVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVIL 520

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
            DM  RG++P+  +Y+ LIDG C+ G++ DA + F  + +   +P   +YN LIN   K 
Sbjct: 521 GDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKK 580

Query: 363 EKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRL 422
            KV EA +L  E+   G+                        D+  +N L+ G   +  +
Sbjct: 581 GKVMEAENLASEITRKGL----------------------SFDVITYNSLISGYSSAGNV 618

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG--GIEKAY------DLLPD--MEEKIR 472
           + A EL++ + + G +P + TY  +I G   EG   +EK Y      +L+PD  +   + 
Sbjct: 619 QKALELYETMKKSGIKPTLNTYHRLIAGCGKEGLVLVEKIYQEMLQMNLVPDRVIYNALI 678

Query: 473 ECL-------KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
            C        KA  L   M  + ++PD++T + L     K+   H+  NL+
Sbjct: 679 HCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGHFKEGRMHKVKNLV 729



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 168/372 (45%), Gaps = 31/372 (8%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           E++  +GL P+ V+ N L+  FC+M  + +A   + +++ K   P+V T   LI G    
Sbjct: 416 EKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRS 475

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
             F     +  +      +  + PNVI Y  +I+ LCKD  + +  V+  DM  RG+ P+
Sbjct: 476 CLFDRCFQILEEME----KKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPN 531

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
           A +YN LI   C A   +DA           +E V           P +++Y  +IN LC
Sbjct: 532 AQIYNMLIDGSCIAGKLKDA-------FRFFDEMVARE------IVPTLVTYNILINGLC 578

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K   V +A+ L  ++  +G+  DV+ Y+SLI GY   G +  A +L+ +++  G  P  +
Sbjct: 579 KKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLN 638

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN-------SCILE------AAELFRTL 397
           +Y+ LI    K E +     +Y EM+ M + PD         C +E      A  L   +
Sbjct: 639 TYHRLIAGCGK-EGLVLVEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAM 697

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                + D   +NCL+ G  K  R+     L   +   G  P   TY ++I G C     
Sbjct: 698 EAQGIQPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIRGLIPKTETYDILIVGHCKLKDF 757

Query: 458 EKAYDLLPDMEE 469
           + AY    +M E
Sbjct: 758 DGAYVWYREMFE 769



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 189/426 (44%), Gaps = 55/426 (12%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + S N  L +L   K Y + + L   +   GL PD       +    K+  +  A   
Sbjct: 145 PSVASLNLFLESLVSTKRYEDTLQLFSEIVESGLRPDQFMYGKAIQAAVKLGDLKRAIEL 204

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           +  + R   SP V     +I GLC + +  +A  LF + +  D R  V PN I Y ++ID
Sbjct: 205 MTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEML--DRR--VAPNRITYNTLID 260

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK------------- 251
           G CK G + +   +   MK   + P    +NSL+   C A   E+A+             
Sbjct: 261 GYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVP 320

Query: 252 ---------------GNTSAALELHEEFVNGNGELGVICHPDVLSY-CSI-INSLCKDVL 294
                          GN  A++ L EE V      GV     +L Y CSI +N+LCK+  
Sbjct: 321 DRFTYTTLFDGHLKCGNVDASITLSEEAVRK----GV----QILDYTCSILLNALCKEGN 372

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           ++KA+E+       G+ P  V ++++++GYC +G I+ A      +E+ G  P+  +YN+
Sbjct: 373 MEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNS 432

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPD------------NSCILEAA-ELFRTLHNTK 401
           L+  + +++ +EEA     +M+  GV P+             SC+ +   ++   +    
Sbjct: 433 LVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKG 492

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
            + ++  + CL++ LCK   +  A  +   +   G  PN   Y ++I G CI G ++ A+
Sbjct: 493 LKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAF 552

Query: 462 DLLPDM 467
               +M
Sbjct: 553 RFFDEM 558



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/440 (23%), Positives = 200/440 (45%), Gaps = 50/440 (11%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           +P +  +N ++G L  +K   +   L + +    + P+ ++ N L++ +CK+  + +AF 
Sbjct: 214 SPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFN 273

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
              R+  +   P ++T   L+ GLC      EA  +  +   +      +P+   Y ++ 
Sbjct: 274 IRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVY----GFVPDRFTYTTLF 329

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
           DG  K G V+    L  +   +G+    +  + L+   C        +GN   A E+ ++
Sbjct: 330 DGHLKCGNVDASITLSEEAVRKGVQILDYTCSILLNALC-------KEGNMEKAEEVLKK 382

Query: 264 FV-NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
           F+ NG   +GV        + +I+N  C+   ++KA      M++ G+ P+ V Y+SL+ 
Sbjct: 383 FLENGLAPVGVF-------FNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVK 435

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
            +C M  +++A K    +  +G +P+  +YNTLI+ Y +    +    +  EM   G++P
Sbjct: 436 KFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKP 495

Query: 383 D-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
           +             ++ ILEA  +   + +     +  ++N L+DG C + +L+ A+  F
Sbjct: 496 NVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFF 555

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK------------------I 471
            ++      P +VTY ++I GLC +G + +A +L  ++  K                   
Sbjct: 556 DEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSA 615

Query: 472 RECLKAIELLHKMAKRYVKP 491
               KA+EL   M K  +KP
Sbjct: 616 GNVQKALELYETMKKSGIKP 635



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 150/329 (45%), Gaps = 25/329 (7%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           M+     P + ++N+L+        +     + E +   GL P+ +S   L+NC CK   
Sbjct: 453 MVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDAN 512

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           + +A V LG ++ +   P+      LI G C+ GK  +A   F + VA +    ++P ++
Sbjct: 513 ILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVARE----IVPTLV 568

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA------- 250
            Y  +I+GLCK G V +   L  ++  +G+  D   YNSLI  Y  A N + A       
Sbjct: 569 TYNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETM 628

Query: 251 -KGNTSAALELHEEFVNGNGELGVICH-------------PDVLSYCSIINSLCKDVLVD 296
            K      L  +   + G G+ G++               PD + Y ++I+   +   V 
Sbjct: 629 KKSGIKPTLNTYHRLIAGCGKEGLVLVEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQ 688

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           KA  L   M+++GI PD + Y+ LI G+   GR+   + L   ++  G IP T +Y+ LI
Sbjct: 689 KACSLHSAMEAQGIQPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIRGLIPKTETYDILI 748

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNS 385
             + K++  + A   Y EM   G  P  S
Sbjct: 749 VGHCKLKDFDGAYVWYREMFENGFTPSVS 777



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 140/319 (43%), Gaps = 29/319 (9%)

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           ++  +C + K    S      +  D    V+P+V      ++ L           LF ++
Sbjct: 117 MLLSICSESKMVSESAELYMLMKKD---GVLPSVASLNLFLESLVSTKRYEDTLQLFSEI 173

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
              G+ PD F+Y   I+    AV   D K     A+EL      G    GV   P V  Y
Sbjct: 174 VESGLRPDQFMYGKAIQA---AVKLGDLK----RAIELMTCMKRG----GV--SPGVFVY 220

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
             +I  LCK+  +  A++LF +M  R + P+ + Y++LIDGYC +G++++A  +   ++ 
Sbjct: 221 NVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKV 280

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN-----------SCILEAA 391
           E   P   ++N+L+N   + + +EEA  +  EM   G  PD             C    A
Sbjct: 281 ENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDA 340

Query: 392 ELFRTLHNTKFELDLTVFNC--LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
            +  +    +  + +  + C  L++ LCK   +  A E+ KK    G  P  V +  ++ 
Sbjct: 341 SITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVN 400

Query: 450 GLCIEGGIEKAYDLLPDME 468
           G C  G I KAY  +  ME
Sbjct: 401 GYCQVGDINKAYTTIEKME 419


>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
          Length = 745

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 119/427 (27%), Positives = 193/427 (45%), Gaps = 63/427 (14%)

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVF-----SPDVVTLGCLIRGLCMQGKFTEASG 178
           S NIL+   C    V DA        R++F     +PDVVT G LI G C  G+   A  
Sbjct: 261 SYNILLKALCDAGRVKDA--------RQLFDEMASAPDVVTYGILIHGHCALGELENAVK 312

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           L  + VA      V PN   Y S++  LC  G+++    +  DM  R +  D  +Y +++
Sbjct: 313 LLDEMVA----GGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVL 368

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
             +C        KG+  +A    +E              D ++Y ++IN LC+ V +++A
Sbjct: 369 SGFC-------NKGDLVSARRWFDEMQRKG------LATDGVTYTTMINGLCRAVELEEA 415

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
           ++L  +M +R +  D V Y+ LIDGYC  G++ +A ++  ++   G  P+  +Y  L + 
Sbjct: 416 EKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDG 475

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEA-----------AELFRTLHNTK---FEL 404
             K   V+ A  L  EM + G+   N+C   +            +  RT+ +      + 
Sbjct: 476 LCKQGDVQAANELLHEMSNKGLEL-NACTYNSLINGLCKAGYLEQAMRTMADMDTACLKP 534

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           D+  +  L+D LCKS  L  A  L +++   G +P +VTY V++ G C+ G +E    LL
Sbjct: 535 DVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLL 594

Query: 465 PDMEEK-----------------IRECLKAIELLHK-MAKRYVKPDEITVSILEELLNKD 506
             M EK                 I   +K+   ++K M  R V P+E T +IL +   K 
Sbjct: 595 DWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPNENTYNILIKGHCKA 654

Query: 507 ENCHECM 513
            N  E +
Sbjct: 655 RNMKEAL 661



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 179/404 (44%), Gaps = 41/404 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++DAL     M+  +       + ++L     K   V+     + +   GL  D V+   
Sbjct: 342 ISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTT 401

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++N  C+ + + +A   L  +  +    D VT   LI G C +GK  EA  +    V   
Sbjct: 402 MINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMV--- 458

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            +  V PNV+ Y ++ DGLCK G V     L  +M  +G+  +A  YNSLI   C A   
Sbjct: 459 -QRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYL 517

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVIC-HPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
           E A              +    ++   C  PDV +Y ++I++LCK   +D+A  L  +M 
Sbjct: 518 EQA--------------MRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEML 563

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            +GI P +V Y+ L++G+C+ GR++  +KL   +  +   P+ ++YN+L+  Y     ++
Sbjct: 564 DKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMK 623

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
               +Y  M S  V P+ +                       +N L+ G CK+  ++ A 
Sbjct: 624 STTEIYKGMRSRDVGPNEN----------------------TYNILIKGHCKARNMKEAL 661

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
               ++ + G      +Y+ +I  L  +    +A +L  DM ++
Sbjct: 662 YFHDEMIQKGFRLTATSYSALIRLLNKKKKFVEARELFHDMRKE 705



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 155/328 (47%), Gaps = 33/328 (10%)

Query: 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV 215
           +V +   L++ LC  G+  +A  LF +  +        P+V+ Y  +I G C  G +   
Sbjct: 258 NVCSYNILLKALCDAGRVKDARQLFDEMAS-------APDVVTYGILIHGHCALGELENA 310

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
             L  +M   G+ P+A VY S++ + C        KG  S AL + E+ V    +  VI 
Sbjct: 311 VKLLDEMVAGGVEPNATVYTSVVALLC-------DKGWISDALRVVEDMV----QRKVIL 359

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
             D   Y ++++  C    +  A+  F +M+ +G+  D V Y+++I+G C    +++A K
Sbjct: 360 --DEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEK 417

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC 386
           L   + +     D  +Y  LI+ Y K  K+ EA  ++  M+  GV P         D  C
Sbjct: 418 LLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLC 477

Query: 387 ----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
               +  A EL   + N   EL+   +N L++GLCK+  L  A      +     +P+V 
Sbjct: 478 KQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVY 537

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           TYT +I  LC  G +++A+ LL +M +K
Sbjct: 538 TYTTLIDALCKSGDLDRAHSLLQEMLDK 565



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 150/346 (43%), Gaps = 56/346 (16%)

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           NV  Y  ++  LC  G V   R LF +M      PD   Y  LI  +C       A G  
Sbjct: 258 NVCSYNILLKALCDAGRVKDARQLFDEMAS---APDVVTYGILIHGHC-------ALGEL 307

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
             A++L +E V G  E      P+   Y S++  LC    +  A  +  DM  R +I D 
Sbjct: 308 ENAVKLLDEMVAGGVE------PNATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDE 361

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
            +Y++++ G+C  G +  AR+ F  ++ +G   D  +Y T+IN   +  ++EEA  L  E
Sbjct: 362 ALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQE 421

Query: 375 MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
           M +                       + ++D   +  L+DG CK  ++  A+++   + +
Sbjct: 422 MWA----------------------RRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQ 459

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK---IRECL---------------K 476
            G  PNVVTYT +  GLC +G ++ A +LL +M  K   +  C                +
Sbjct: 460 RGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQ 519

Query: 477 AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
           A+  +  M    +KPD  T + L + L K  +     +LL   L +
Sbjct: 520 AMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDK 565



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 125/291 (42%), Gaps = 44/291 (15%)

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL- 179
           D V+  +L++ +CK   +++AF     ++++  +P+VVT   L  GLC QG    A+ L 
Sbjct: 430 DEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELL 489

Query: 180 --------------FTKFVAFDCRPNVI----------------PNVICYASIIDGLCKD 209
                         +   +   C+   +                P+V  Y ++ID LCK 
Sbjct: 490 HEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKS 549

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
           G +++   L  +M  +GI P    YN L+  +C +   E  K      LE +        
Sbjct: 550 GDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKN-------- 601

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
                 HP+  +Y S++   C +  +    E++  M+SR + P+   Y+ LI G+C    
Sbjct: 602 -----IHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPNENTYNILIKGHCKARN 656

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           + +A      +  +G     +SY+ LI   +K +K  EA  L+ +M   G+
Sbjct: 657 MKEALYFHDEMIQKGFRLTATSYSALIRLLNKKKKFVEARELFHDMRKEGL 707



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 101/234 (43%), Gaps = 17/234 (7%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++NSL+  L    Y    +     ++T  L PD  +   L++  CK   +  A   L  +
Sbjct: 503 TYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEM 562

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
           L K   P +VT   L+ G CM G+         K + +    N+ PN   Y S++   C 
Sbjct: 563 LDKGIKPTIVTYNVLMNGFCMSGRVEGGK----KLLDWMLEKNIHPNAATYNSLMKQYCI 618

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           +  +     ++  M+ R + P+   YN LI+ +C A N ++A       L  H+E +   
Sbjct: 619 ENNMKSTTEIYKGMRSRDVGPNENTYNILIKGHCKARNMKEA-------LYFHDEMIQKG 671

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
             L         SY ++I  L K     +A+ELF DM+  G+  +  VY   ID
Sbjct: 672 FRLTAT------SYSALIRLLNKKKKFVEARELFHDMRKEGLTAESDVYDFYID 719


>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
          Length = 612

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 179/391 (45%), Gaps = 35/391 (8%)

Query: 87  MPSFNSLLGALAG-KKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVAL 145
           MP+++ L+  L    + Y  ++ L +     G+ P+    N+LM    +   ++ A    
Sbjct: 210 MPAWSDLMNRLPSVPEAYAFYLHLLD----AGVPPEARQFNMLMRDMIRSGKLASARNVF 265

Query: 146 GRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDG 205
             +LR+   P VVT   L+ G+C       A+ L         +  + P+V  Y + I G
Sbjct: 266 DEMLRRGVQPTVVTFNTLMSGMCKASDLNNANALR----GLMAKAGIAPDVYTYGAFIQG 321

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
           LCK G +     +F +M  RG+ P+  V  +LI  +C        +G+ +A LEL  E  
Sbjct: 322 LCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHC-------KEGDVTAGLELRWEMA 374

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
                 GV    D+++Y +++N  C+   +  A ++  +M+  G+ PD V Y++LIDG C
Sbjct: 375 T----RGV--KADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCC 428

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
             G +D A ++   +  EG   D  +Y  LI+  SK  +  +A  +  EM+  G++PDN+
Sbjct: 429 KEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNT 488

Query: 386 CILEAAELF-------------RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
                 + F             + + N      +  +N +++G C   ++++A  L   +
Sbjct: 489 TYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAM 548

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
              G  PN +TY +++ G C  G +    +L
Sbjct: 549 LNIGVCPNDITYNILLDGHCKHGKVRDTEEL 579



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 133/297 (44%), Gaps = 34/297 (11%)

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
            V P    +  ++  + + G +   R +F +M  RG+ P    +N+L+   C A      
Sbjct: 237 GVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKA------ 290

Query: 251 KGNTSAALELHEEFVNGNGELGVICH----PDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                       +  N N   G++      PDV +Y + I  LCK   +  A E+F +M 
Sbjct: 291 -----------SDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMC 339

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            RG+ P+ VV ++LID +C  G +    +L   + + G   D  +YN L+N + ++  ++
Sbjct: 340 ERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMK 399

Query: 367 EALSLYGEMISMGVRPD--------NSCILE-----AAELFRTLHNTKFELDLTVFNCLV 413
            A  +  EM   G++PD        + C  E     A E+ + + +    LD   +  L+
Sbjct: 400 AANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALI 459

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            GL K+ R   A  +  ++   G +P+  TYT++I   C  G ++  +  L +M+ K
Sbjct: 460 SGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNK 516



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/371 (22%), Positives = 159/371 (42%), Gaps = 64/371 (17%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           +A  F+ +++     P    FN L+  +       +   + + +   G+ P  V+ N LM
Sbjct: 225 EAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLM 284

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           +  CK   +++A    G + +   +PDV T G  I+GLC  G+  +A  +F +     C 
Sbjct: 285 SGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEM----CE 340

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
             + PN +   ++ID  CK+G V     L  +M  RG+  D   YN+L+  +C   + + 
Sbjct: 341 RGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKA 400

Query: 250 A----------------------------KGNTSAALELHEE---------------FVN 266
           A                            +G    A+E+ +E                ++
Sbjct: 401 ANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALIS 460

Query: 267 GNGELG-------VIC-------HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
           G  + G       ++C        PD  +Y  +I++ CK+  V    +   +M+++G  P
Sbjct: 461 GLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNP 520

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS---YSKIEKVEEAL 369
            +V Y+ +++G+C +G++ +A  L  ++ + G  P+  +YN L++    + K+   EE  
Sbjct: 521 GIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDGHCKHGKVRDTEELK 580

Query: 370 SLYGEMISMGV 380
           S  G +   GV
Sbjct: 581 SAKGMVSDFGV 591



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 95/223 (42%), Gaps = 40/223 (17%)

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           V +A   +L +   G+ P+   ++ L+      G++  AR +F  +   G  P   ++NT
Sbjct: 223 VPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNT 282

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           L++   K   +  A +L G M   G+ P                      D+  +   + 
Sbjct: 283 LMSGMCKASDLNNANALRGLMAKAGIAP----------------------DVYTYGAFIQ 320

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE----- 469
           GLCK+ R++ A E+F+++   G  PN V  T +I   C EG +    +L  +M       
Sbjct: 321 GLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKA 380

Query: 470 -------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                        ++R+   A +++ +M K  +KPD++T + L
Sbjct: 381 DLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTL 423


>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
 gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
          Length = 439

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 175/368 (47%), Gaps = 39/368 (10%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+  + ++L+   CK   + +A     ++L +   P++  +  L+  LC  GK  +A  +
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQAMAI 60

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM-KGRGIYPDAFVYNSLI 238
           F       C P+VI   I    +I+G C+   ++K   LF +M K   + P+A  Y ++I
Sbjct: 61  FR---GIQCSPSVITLNI----LINGFCELQLLDKALELFHEMEKNFALVPEATTYTAII 113

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
           + YC     + A+       +L EE           C  DV++  S+    CK   VD+A
Sbjct: 114 KCYCKMDRLDQAR-------QLLEE--------SSCCSSDVIAITSVARGFCKAQRVDEA 158

Query: 299 KELFLDM-KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
            +L LDM + +   PD+V ++ +I G+C  GR+ +A ++  ++ S GC+P+  +Y TLI+
Sbjct: 159 YQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLID 218

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCI--------------LEAA-ELFRTLHNTKF 402
            + K   + EAL L+  + S     + + +              LE A EL + +     
Sbjct: 219 GFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDL 278

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
             D   +  L+DGLCK  R      +F+++ R G  P+VVTYT ++   C  G ++ A  
Sbjct: 279 RADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQ 338

Query: 463 LLPDMEEK 470
           ++  M  K
Sbjct: 339 VIRSMVAK 346



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 178/389 (45%), Gaps = 55/389 (14%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
            L+P+  +   ++ C+CKM  +  A   L        S DV+ +  + RG C   +  EA
Sbjct: 101 ALVPEATTYTAIIKCYCKMDRLDQARQLLEE--SSCCSSDVIAITSVARGFCKAQRVDEA 158

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L    V    + +  P+++ +  II G CK G V +   +   +   G  P+A  Y +
Sbjct: 159 YQLLLDMVE---KKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTT 215

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI  +C         GN S AL+L +   + +        P+V+++ ++I+ LCK   ++
Sbjct: 216 LIDGFC-------KSGNLSEALQLFKVLSSRDHH----AEPNVVTFNALISGLCKADRLE 264

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A EL   MK+R +  D   Y++L+DG C  GR  +  ++F  +  EGC P   +Y TL+
Sbjct: 265 HAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLV 324

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           +++ K   +++A  +   M++ G+ P                      D+T +  L++GL
Sbjct: 325 HAHCKAGSLQDAQQVIRSMVAKGIPP----------------------DVTTYTVLLEGL 362

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLK 476
            ++ ++R+A E F+K+ R    P  V Y+ ++ G C    ++                 +
Sbjct: 363 FENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAALVD-----------------E 405

Query: 477 AIELLHKMAKRYVKPDEITVSILEELLNK 505
           A++   +M  R + PD  T  +L E+L K
Sbjct: 406 AVKYYVEMLDRRLAPDPATCKLLVEMLCK 434



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 110/250 (44%), Gaps = 38/250 (15%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFS-------PDVVTLGCL 163
           E L ++G +P+ V+   L++ FCK   +S+A       L KV S       P+VVT   L
Sbjct: 199 ETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQ-----LFKVLSSRDHHAEPNVVTFNAL 253

Query: 164 IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
           I GLC   +   A  L  +  A D R +       Y +++DGLCK G  ++V  +F +M 
Sbjct: 254 ISGLCKADRLEHAFELVKQMKARDLRADTFT----YTTLMDGLCKQGRTSEVSRVFEEML 309

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAK-------------GNTSAALELHEEFVNGNGE 270
             G  P    Y +L+  +C A + +DA+               T+  + L   F NG   
Sbjct: 310 REGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVR 369

Query: 271 LGV---------ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
                        C P  + Y +++   CK  LVD+A + +++M  R + PD      L+
Sbjct: 370 TATEFFEKILRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLV 429

Query: 322 DGYCLMGRID 331
           +  C  GR D
Sbjct: 430 EMLCKRGRTD 439



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 104/247 (42%), Gaps = 38/247 (15%)

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           P+   +S LI G C  GR+ +A + +  +    C+P+    N L+ S  +  K+++A+++
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQAMAI 60

Query: 372 YG------EMISMGVRPDNSCILE----AAELFRTLH-NTKFELDLTVFNCLVDGLCKSW 420
           +        +I++ +  +  C L+    A ELF  +  N     + T +  ++   CK  
Sbjct: 61  FRGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMD 120

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK---------- 470
           RL  A +L ++        +V+  T +  G C    +++AY LL DM EK          
Sbjct: 121 RLDQARQLLEE--SSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAW 178

Query: 471 ------------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPS 518
                       +RE   A E+L  +      P+ +T + L +   K  N  E + L   
Sbjct: 179 NVIIHGFCKAGRVRE---AYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKV 235

Query: 519 FLSRNQE 525
             SR+  
Sbjct: 236 LSSRDHH 242


>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1274

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 112/456 (24%), Positives = 207/456 (45%), Gaps = 51/456 (11%)

Query: 78  MIHMQPTPFMPS---FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           M  M+ + + P+   +N++L     K  +   I L + + + G+  D  + N+L++  C+
Sbjct: 216 MQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCR 275

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
              ++  ++ L  + +++  P+ VT   LI G   +GK   AS L  + ++F     + P
Sbjct: 276 SNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSF----GLSP 331

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           N + + ++IDG   +G   +   +F  M+ +G+ P    Y  L+   C    ++ A+G  
Sbjct: 332 NHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFY 391

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
                     +  NG    +C   + +Y  +I+ LCK+  +D+A  L  +M   GI PD+
Sbjct: 392 MR--------MKRNG----VCVGRI-TYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDI 438

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           V YS+LI+G+C +GR   A+++   I   G  P+   Y+TLI +  ++  ++EA+ +Y  
Sbjct: 439 VTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEA 498

Query: 375 MISMGVRPDN-------------SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
           MI  G   D+               + EA E  R + +     +   F+CL++G   S  
Sbjct: 499 MILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGE 558

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------ 469
              A+ +F ++ + G  P   TY  ++ GLC  G + +A   L  +              
Sbjct: 559 GLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNT 618

Query: 470 ------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                 K     KA+ L  +M +R + PD  T + L
Sbjct: 619 LLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSL 654



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 158/364 (43%), Gaps = 30/364 (8%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  P   + N ++    K       +  L  +L++   PDV T   LI  LC +G F ++
Sbjct: 153 GFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKS 212

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
           S L  K      +    P ++ Y +++   CK G       L   MK +G+  D   YN 
Sbjct: 213 SYLMQKME----KSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNM 268

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI   C +     AKG      ++ +  +          HP+ ++Y ++IN    +  V 
Sbjct: 269 LIHDLCRSNRI--AKGYL-LLRDMRKRMI----------HPNEVTYNTLINGFSNEGKVL 315

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A +L  +M S G+ P+ V +++LIDG+   G   +A K+F  +E++G  P   SY  L+
Sbjct: 316 IASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLL 375

Query: 357 NSYSKIEKVEEALSLYGEMISMGV-------------RPDNSCILEAAELFRTLHNTKFE 403
           +   K  + + A   Y  M   GV                N  + EA  L   +     +
Sbjct: 376 DGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGID 435

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D+  ++ L++G CK  R ++A E+  ++ R G  PN + Y+ +I   C  G +++A  +
Sbjct: 436 PDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRI 495

Query: 464 LPDM 467
              M
Sbjct: 496 YEAM 499



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 105/401 (26%), Positives = 169/401 (42%), Gaps = 40/401 (9%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L +A+  +  MI    T    +FN L+ +L               + + G+LP+ VS + 
Sbjct: 489 LKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDC 548

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N +        AF     + +    P   T G L++GLC  G   EA        A  
Sbjct: 549 LINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAV- 607

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
             P  +  V+ Y +++  +CK G + K   LF +M  R I PD++ Y SLI   C     
Sbjct: 608 --PAAVDTVM-YNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLC----- 659

Query: 248 EDAKGNTSAALELHEEF-VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
              KG T  A+   +E    GN        P+ + Y   ++ + K             M 
Sbjct: 660 --RKGKTVIAILFAKEAEARGN------VLPNKVMYTCFVDGMFKAGQWKAGIYFREQMD 711

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           + G  PD+V  +++IDGY  MG+I+    L   + ++   P+ ++YN L++ YSK + V 
Sbjct: 712 NLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVS 771

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
            +  LY  +I  G+ PD            T H+            LV G+C+S  L    
Sbjct: 772 TSFLLYRSIILNGILPDK----------LTCHS------------LVLGICESNMLEIGL 809

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           ++ K     G E +  T+ ++I   C  G I  A+DL+  M
Sbjct: 810 KILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVM 850



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 100/436 (22%), Positives = 191/436 (43%), Gaps = 44/436 (10%)

Query: 107  ICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166
            I   E+++ +G  PD V+ N +++ + +M  +      L  +  +   P++ T   L+ G
Sbjct: 704  IYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHG 763

Query: 167  LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
               +   + +  L+   +       ++P+ +   S++ G+C+   +     +      RG
Sbjct: 764  YSKRKDVSTSFLLYRSIIL----NGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRG 819

Query: 227  IYPDAFVYNSLIRVYCCA---VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
            +  D + +N LI   CCA   +NW         A +L    V     LG+    D     
Sbjct: 820  VEVDRYTFNMLIS-KCCANGEINW---------AFDL----VKVMTSLGISLDKDTCD-- 863

Query: 284  SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
            ++++ L ++    +++ +  +M  +GI P+   Y  LI+G C +G I  A  +   + + 
Sbjct: 864  AMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAH 923

Query: 344  GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP-------------DNSCILEA 390
               P   + + ++ + +K  K +EA  L   M+ M + P              N  ++EA
Sbjct: 924  KICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEA 983

Query: 391  AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
             EL   + N   +LDL  +N L+ GLC    +  A+EL++++   G   N  TY  +I G
Sbjct: 984  LELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRG 1043

Query: 451  LCI-EGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENC 509
            L   E     A  +L D+    R  + ++ L    + R +K   + +  L+ L N    C
Sbjct: 1044 LLARETAFSGADIILKDLLA--RGFITSMSLSQD-SHRNLK---MAMEKLKALQNDIAVC 1097

Query: 510  H-ECMNLLPSFLSRNQ 524
            H E ++L  + LS+NQ
Sbjct: 1098 HREELDLQSNVLSKNQ 1113



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 119/295 (40%), Gaps = 59/295 (20%)

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
           VY+ LIRVY         +G    +LE+        G  G   +P V +  +I+ S+ K 
Sbjct: 125 VYDILIRVYL-------REGMIQDSLEIFRLM----GLYGF--NPSVYTCNAILGSVVKS 171

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
                      +M  R I PDV  ++ LI+  C  G  + +  L   +E  G  P   +Y
Sbjct: 172 GEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTY 231

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCL 412
           NT+++ Y K  + + A+ L   M S GV                      + D+  +N L
Sbjct: 232 NTVLHWYCKKGRFKAAIELLDHMKSKGV----------------------DADVCTYNML 269

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM----- 467
           +  LC+S R+   + L + + +    PN VTY  +I G   EG +  A  LL +M     
Sbjct: 270 IHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGL 329

Query: 468 ----------------EEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
                           E   +E LK   + + M  + + P E++  +L + L K+
Sbjct: 330 SPNHVTFNALIDGHISEGNFKEALK---MFYMMEAKGLTPSEVSYGVLLDGLCKN 381


>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 175/366 (47%), Gaps = 36/366 (9%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ V+ +IL++  C+   + +AF     ++ K   P   T   LI+  C  G   +A  +
Sbjct: 197 PNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKM 256

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             +     C    +PNV  Y  +ID LC++G + +   +F  M   G+ P    +N+LI 
Sbjct: 257 LDEMATKAC----VPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALIN 312

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            YC        +G   +A +L      GN      C P++ +Y  ++  LC+   V K+ 
Sbjct: 313 GYC-------KEGWVVSAFQLLSVMEKGN------CKPNIRTYNELMEGLCR---VSKSY 356

Query: 300 ELFLDMK---SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           + FL ++     G++PD V Y+ L+DG+C  G+++ A  +F S+ S G  PD  ++  LI
Sbjct: 357 KAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALI 416

Query: 357 NSYSKIEKVEEALSLYGEMISMGVR---------PDNSCILEAAE----LFRTLHNTKFE 403
           +   K+ ++E+A  + G M+  G+           D  C +  A+    LF  +   +  
Sbjct: 417 DGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCL 476

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
                FNC +D L K ++L  A  +  K+ +YG  P+VVT+T++I G C  G    +  +
Sbjct: 477 TTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKM 536

Query: 464 LPDMEE 469
           L  M++
Sbjct: 537 LERMKQ 542



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 111/415 (26%), Positives = 189/415 (45%), Gaps = 47/415 (11%)

Query: 59  ENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFIC--LSERLNTI 116
           E+S++G V+L  AL   + M  +      P +++LL  LA  K  + F+   +  R+   
Sbjct: 68  EDSENGVVKLMGAL---DGMTELGFRLSYPCYSTLLMCLA--KLNMGFVAFLVYRRMVNE 122

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G +   +    ++N  CK   V  A +   ++LR  F  D      L+   C +    EA
Sbjct: 123 GFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEA 182

Query: 177 SGLFTKFVAFD-CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
             +F K    + CRPN +     Y+ +I GLC+ G + +   L  +M  +G  P    Y 
Sbjct: 183 FRVFEKMSKEESCRPNSVT----YSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYT 238

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
            LI+  C         G T  A+++ +E           C P+V +Y  +I+ LC++  +
Sbjct: 239 VLIKAKC-------DIGMTDKAMKMLDEMATK------ACVPNVHTYTILIDRLCREGKI 285

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           ++A  +F  M   G+ P ++ +++LI+GYC  G +  A +L   +E   C P+  +YN L
Sbjct: 286 EEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNEL 345

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDG 415
           +    ++ K  +A  L   ++  G+ PD                         +N LVDG
Sbjct: 346 MEGLCRVSKSYKAFLLLRRVVDNGLLPDR----------------------VTYNILVDG 383

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            CK  +L  A+ +F  +   G EP+  T+T +I GLC  G +E+A  +L  M +K
Sbjct: 384 FCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKK 438



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 81/370 (21%), Positives = 170/370 (45%), Gaps = 30/370 (8%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           + + T   +P+  +  IL++  C+   + +A     ++L+    P ++T   LI G C +
Sbjct: 258 DEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKE 317

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G    A  L +     +C+PN+      Y  +++GLC+     K  +L   +   G+ PD
Sbjct: 318 GWVVSAFQLLSVMEKGNCKPNIRT----YNELMEGLCRVSKSYKAFLLLRRVVDNGLLPD 373

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
              YN L+  +C        +G  + A  +     +   E      PD  ++ ++I+ LC
Sbjct: 374 RVTYNILVDGFC-------KEGQLNMAFNIFNSMNSAGLE------PDGFTFTALIDGLC 420

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K   +++A  +   M  +GI  D V +++LIDG+C +G+  D   LF ++    C+    
Sbjct: 421 KLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAH 480

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCILEAA----------ELFRTL 397
           ++N  +++  K  K+ EA ++ G+M+  G+ P    ++ ++E            ++   +
Sbjct: 481 TFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERM 540

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                  ++  +  +++GLC + R+  A  +   +  +G  PN  TY V++      G +
Sbjct: 541 KQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRL 600

Query: 458 EKAYDLLPDM 467
           ++A+ ++  M
Sbjct: 601 DRAFQIVSTM 610



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 166/389 (42%), Gaps = 39/389 (10%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E ++ +A   F  M+     P + +FN+L+     + + V+   L   +      P+  +
Sbjct: 282 EGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRT 341

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N LM   C++     AF+ L R++     PD VT   L+ G C +G+   A  +F    
Sbjct: 342 YNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMN 401

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
           +      + P+   + ++IDGLCK G + +   +   M  +GI  D   + +LI  +C  
Sbjct: 402 S----AGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHC-- 455

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                  G       L E  V         C     ++   +++L KD  +++A  +   
Sbjct: 456 -----KIGKAKDVCFLFENMVENR------CLTTAHTFNCFLDALGKDYKLNEANAMLGK 504

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M   G++P VV ++ LI+G+C  G    + K+   ++  GC P+  +Y  +IN      +
Sbjct: 505 MMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGR 564

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
           VEEA ++   M S GV P+              H T        +  LV    K+ RL  
Sbjct: 565 VEEAETILFSMSSFGVSPN--------------HFT--------YAVLVKAHVKAGRLDR 602

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCI 453
           A+++   + + G +PN   Y+ ++ G  +
Sbjct: 603 AFQIVSTMVKNGCQPNSHIYSALLSGFVL 631



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 163/351 (46%), Gaps = 35/351 (9%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +N+ GL PD  +   L++  CK+  +  A   LG +++K  S D VT   LI G C  GK
Sbjct: 400 MNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGK 459

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
             +   LF   V   C    +     +   +D L KD  +N+   +   M   G+ P   
Sbjct: 460 AKDVCFLFENMVENRC----LTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVV 515

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            +  LI  +C A       G T+ +L++ E            C P+V +Y  IIN LC +
Sbjct: 516 THTILIEGHCRA-------GETALSLKMLERMKQAG------CSPNVYTYTIIINGLCNN 562

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             V++A+ +   M S G+ P+   Y+ L+  +   GR+D A ++  ++   GC P++  Y
Sbjct: 563 GRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIY 622

Query: 353 NTLINSY--SKIEKVEEALSLYGEMISMGVRP---DNSCILEAAELFRTL---HNTKFEL 404
           + L++ +  S       ALS  G++ +  +     DN+C+  ++ +FR +   H  K   
Sbjct: 623 SALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCL--SSHVFRLMDVDHALKIRD 680

Query: 405 DLT--------VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
           ++         ++N LV GLCK  R+  A +L + + ++G  P+    +++
Sbjct: 681 EIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAISSII 731



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 141/330 (42%), Gaps = 31/330 (9%)

Query: 72  LCF-FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFI-CLSERLNTIGLLPDFVSLNILM 129
           +CF F  M+  +      +FN  L AL GK Y +N    +  ++   GL+P  V+  IL+
Sbjct: 463 VCFLFENMVENRCLTTAHTFNCFLDAL-GKDYKLNEANAMLGKMMKYGLVPSVVTHTILI 521

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
              C+    + +   L R+ +   SP+V T   +I GLC  G+  EA  +     +F   
Sbjct: 522 EGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSF--- 578

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
             V PN   YA ++    K G +++   +   M   G  P++ +Y++L+  +  +     
Sbjct: 579 -GVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIG 637

Query: 250 AKGNTSA----ALELHEEFVNGN-------------------GELGVICHPDVLSYCSII 286
           A+  +S     A  L  E  + N                    E+     P    Y  ++
Sbjct: 638 ARALSSTGDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVPTEDLYNFLV 697

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
             LCK+  + +A +L  DM   G+ PD  + SS+I+ YC   + D+  +    +     +
Sbjct: 698 VGLCKEGRIIEADQLTQDMVKHGLFPDKAI-SSIIEHYCKTCKYDNCLEFMKLVLDNKFV 756

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
           P  +SY  +I+      +V+EA  L  +++
Sbjct: 757 PSFASYCWVIHGLRNEGRVQEAQKLVSDLV 786


>gi|357442909|ref|XP_003591732.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480780|gb|AES61983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 344

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/343 (31%), Positives = 164/343 (47%), Gaps = 61/343 (17%)

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           +V+ Y +IIDGLCKD  VN    L+ +M    I PD   +NSLI  +C     +DA G  
Sbjct: 16  DVVMYNTIIDGLCKDKLVNDAYELYSEMIAEKISPDVATFNSLIYGFCIIGQLKDAFG-- 73

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
                L  + V  N       +P V ++  +++ LCK+  + +AK +   M   G++P+V
Sbjct: 74  -----LFSQMVLKN------INPSVYTFTILVDGLCKEGKMKEAKSVIAMMMKDGVLPNV 122

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           V Y+S+++GYCL+  ++  + +F +I   G  P+T SYN +IN + KI+ V EAL L+ E
Sbjct: 123 VTYTSIMEGYCLVNEVNKTKHVFRTISRMGVAPNTQSYNIMINGFCKIKIVNEALILFKE 182

Query: 375 MISMGVRP---------DNSC--ILEAAELFR-TLHNTKFELDLTVFNCLVDGLCKS--- 419
           M   G+ P         D  C   +  + L R  L        LTV    +D LCKS   
Sbjct: 183 MCCRGIVPITVTYSSLIDGLCKSTMLGSLLMRCMLMVNHLIYPLTVL--YIDALCKSNHL 240

Query: 420 -------------WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
                         RL++A ++F+ L   G   N+ TY +MI GLC EG  ++A  LL  
Sbjct: 241 DKAIALVKKIKDQGRLKNAQDVFQDLLIKGYSLNIQTYNIMINGLCKEGLFDEAEALLSK 300

Query: 467 MEEKIRECLKAIELLHKMAKRYVKPDEITVSI-LEELLNKDEN 508
           M++                   + PD +T    +  L +KDEN
Sbjct: 301 MDD-----------------YGIIPDAVTYETNIRALFHKDEN 326



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 101/347 (29%), Positives = 166/347 (47%), Gaps = 26/347 (7%)

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           D V  N +++  CK   V+DA+     ++ +  SPDV T   LI G C+ G+  +A GLF
Sbjct: 16  DVVMYNTIIDGLCKDKLVNDAYELYSEMIAEKISPDVATFNSLIYGFCIIGQLKDAFGLF 75

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
           ++ V      N+ P+V  +  ++DGLCK+G + + + +   M   G+ P+   Y S++  
Sbjct: 76  SQMVL----KNINPSVYTFTILVDGLCKEGKMKEAKSVIAMMMKDGVLPNVVTYTSIMEG 131

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
           YC  VN  +   +    +            +GV   P+  SY  +IN  CK  +V++A  
Sbjct: 132 YCL-VNEVNKTKHVFRTI----------SRMGV--APNTQSYNIMINGFCKIKIVNEALI 178

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           LF +M  RGI+P  V YSSLIDG C    +       + + +    P T  Y   I++  
Sbjct: 179 LFKEMCCRGIVPITVTYSSLIDGLCKSTMLGSLLMRCMLMVNHLIYPLTVLY---IDALC 235

Query: 361 KIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           K   +++A++L  ++       D   +  A ++F+ L    + L++  +N +++GLCK  
Sbjct: 236 KSNHLDKAIALVKKI------KDQGRLKNAQDVFQDLLIKGYSLNIQTYNIMINGLCKEG 289

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
               A  L  K+  YG  P+ VTY   I  L  +   EKA  L   M
Sbjct: 290 LFDEAEALLSKMDDYGIIPDAVTYETNIRALFHKDENEKAEKLFRKM 336



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 104/194 (53%), Gaps = 13/194 (6%)

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
           G + + DV+ Y +II+ LCKD LV+ A EL+ +M +  I PDV  ++SLI G+C++G++ 
Sbjct: 10  GKLVNSDVVMYNTIIDGLCKDKLVNDAYELYSEMIAEKISPDVATFNSLIYGFCIIGQLK 69

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCIL 388
           DA  LF  +  +   P   ++  L++   K  K++EA S+   M+  GV P+    + I+
Sbjct: 70  DAFGLFSQMVLKNINPSVYTFTILVDGLCKEGKMKEAKSVIAMMMKDGVLPNVVTYTSIM 129

Query: 389 EA----------AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
           E             +FRT+       +   +N +++G CK   +  A  LFK++   G  
Sbjct: 130 EGYCLVNEVNKTKHVFRTISRMGVAPNTQSYNIMINGFCKIKIVNEALILFKEMCCRGIV 189

Query: 439 PNVVTYTVMICGLC 452
           P  VTY+ +I GLC
Sbjct: 190 PITVTYSSLIDGLC 203



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 138/300 (46%), Gaps = 47/300 (15%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD  + N L+  FC +  + DAF    +++ K  +P V T   L+ GLC +GK  EA  +
Sbjct: 50  PDVATFNSLIYGFCIIGQLKDAFGLFSQMVLKNINPSVYTFTILVDGLCKEGKMKEAKSV 109

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
               +A   +  V+PNV+ Y SI++G C    VNK + +F  +   G+ P+   YN +I 
Sbjct: 110 ----IAMMMKDGVLPNVVTYTSIMEGYCLVNEVNKTKHVFRTISRMGVAPNTQSYNIMIN 165

Query: 240 VYCCAVNWEDA---------KGNTSAALELHEEFVNG------NGELGVIC--------H 276
            +C      +A         +G     +  +   ++G       G L + C        +
Sbjct: 166 GFCKIKIVNEALILFKEMCCRGIVPITVT-YSSLIDGLCKSTMLGSLLMRCMLMVNHLIY 224

Query: 277 PDVLSYCSIINSLCKDVLVDK----------------AKELFLDMKSRGIIPDVVVYSSL 320
           P  + Y   I++LCK   +DK                A+++F D+  +G   ++  Y+ +
Sbjct: 225 PLTVLY---IDALCKSNHLDKAIALVKKIKDQGRLKNAQDVFQDLLIKGYSLNIQTYNIM 281

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           I+G C  G  D+A  L   ++  G IPD  +Y T I +    ++ E+A  L+ +MI+ G+
Sbjct: 282 INGLCKEGLFDEAEALLSKMDDYGIIPDAVTYETNIRALFHKDENEKAEKLFRKMIARGL 341



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 132/322 (40%), Gaps = 51/322 (15%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +NDA   ++ MI  + +P + +FNSL+          +   L  ++    + P   +  I
Sbjct: 33  VNDAYELYSEMIAEKISPDVATFNSLIYGFCIIGQLKDAFGLFSQMVLKNINPSVYTFTI 92

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++  CK   + +A   +  +++    P+VVT   ++ G C+  +  +   +F       
Sbjct: 93  LVDGLCKEGKMKEAKSVIAMMMKDGVLPNVVTYTSIMEGYCLVNEVNKTKHVFRTI---- 148

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR-------- 239
            R  V PN   Y  +I+G CK   VN+  +LF +M  RGI P    Y+SLI         
Sbjct: 149 SRMGVAPNTQSYNIMINGFCKIKIVNEALILFKEMCCRGIVPITVTYSSLIDGLCKSTML 208

Query: 240 --------------VYCCAVNWEDA-------------------KGNTSAALELHEEFVN 266
                         +Y   V + DA                   +G    A ++ ++ + 
Sbjct: 209 GSLLMRCMLMVNHLIYPLTVLYIDALCKSNHLDKAIALVKKIKDQGRLKNAQDVFQDLLI 268

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
               L      ++ +Y  +IN LCK+ L D+A+ L   M   GIIPD V Y + I     
Sbjct: 269 KGYSL------NIQTYNIMINGLCKEGLFDEAEALLSKMDDYGIIPDAVTYETNIRALFH 322

Query: 327 MGRIDDARKLFVSIESEGCIPD 348
               + A KLF  + + G + +
Sbjct: 323 KDENEKAEKLFRKMIARGLLKE 344



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 13/135 (9%)

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NS-----CIL- 388
            IE +    D   YNT+I+   K + V +A  LY EMI+  + PD    NS     CI+ 
Sbjct: 7   QIEGKLVNSDVVMYNTIIDGLCKDKLVNDAYELYSEMIAEKISPDVATFNSLIYGFCIIG 66

Query: 389 ---EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
              +A  LF  +        +  F  LVDGLCK  +++ A  +   + + G  PNVVTYT
Sbjct: 67  QLKDAFGLFSQMVLKNINPSVYTFTILVDGLCKEGKMKEAKSVIAMMMKDGVLPNVVTYT 126

Query: 446 VMICGLCIEGGIEKA 460
            ++ G C+   + K 
Sbjct: 127 SIMEGYCLVNEVNKT 141


>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
          Length = 987

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 119/449 (26%), Positives = 183/449 (40%), Gaps = 85/449 (18%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GLLPD V+ N ++  +CK   ++ A      +       D  T   L+ G C      +A
Sbjct: 174 GLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKA 233

Query: 177 SGLFTKFVAFDCRPNVIP-------------------------------NVICYASIIDG 205
             L        CR N                                  N+  Y  +I G
Sbjct: 234 CWLLMMMPLMGCRRNEYSYTILIQGLCEARCVREALVLVFMMVHDGCSLNLHTYTLLIKG 293

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
           LCK+G ++  R L  +M  RG+ P  + YN++I  YC +   +DA G  +         +
Sbjct: 294 LCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKA--------LM 345

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
             NG     C+PD  +Y S+I  LC   L D+A+EL     +RG  P V+ +++LI+GYC
Sbjct: 346 EQNG-----CNPDDWTYNSLIYGLCGGKL-DEAEELLNGAIARGFTPTVITFTNLINGYC 399

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
              RIDDA ++  ++ S  C  D  +Y  LIN   K  +++EA     EM + G+ P   
Sbjct: 400 KAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAP--- 456

Query: 386 CILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
                              ++  +  ++DG CK   + +A E+FK +   G  PN  TY 
Sbjct: 457 -------------------NVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYG 497

Query: 446 VMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKR 487
            +I GL  +  + KA  L+  M+E                  K  E   A  L   M + 
Sbjct: 498 SLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQN 557

Query: 488 YVKPDEITVSILEELLNKDENCHECMNLL 516
            + PDE   ++L + L K     E  + L
Sbjct: 558 GLTPDEQAYNVLTDALCKSGRAEEAYSFL 586



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 117/430 (27%), Positives = 189/430 (43%), Gaps = 64/430 (14%)

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           S  IL+   C+   V +A V +  ++    S ++ T   LI+GLC +G+  +A GL  + 
Sbjct: 251 SYTILIQGLCEARCVREALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRIHDARGLLDEM 310

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
                   V+P+V  Y ++IDG CK G +     +   M+  G  PD + YNSLI   C 
Sbjct: 311 PL----RGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLCG 366

Query: 244 A--------VNWEDAKGNTSAALELHEEFVNGNGELGVI--------------CHPDVLS 281
                    +N   A+G T   +      +NG  +   I              C  D+ +
Sbjct: 367 GKLDEAEELLNGAIARGFTPTVITF-TNLINGYCKAERIDDALRVKSNMISSNCKLDLQA 425

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y  +IN L K   + +AKE   +M + G+ P+VV Y+S+IDGYC +G +  A ++F  +E
Sbjct: 426 YGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLME 485

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK 401
            EGC P+  +Y +LI    + +K+ +A++L  +M   G+ P                   
Sbjct: 486 HEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITP------------------- 526

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
               +  +  L+ G CK     +A+ LF+ + + G  P+   Y V+   LC  G  E+AY
Sbjct: 527 ---GVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAY 583

Query: 462 DL---------------LPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
                            L D   K      A  L+ KM     K D  T S+L + L K 
Sbjct: 584 SFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQ 643

Query: 507 ENCHECMNLL 516
           +  +E +++L
Sbjct: 644 KKLNEALSIL 653



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 172/400 (43%), Gaps = 32/400 (8%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           AL  F  M H    P   ++ SL+  L   K     + L  ++   G+ P  ++   L+ 
Sbjct: 477 ALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQ 536

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
             CK     +AF     + +   +PD      L   LC  G+  EA        +F  R 
Sbjct: 537 GQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEA-------YSFLVRK 589

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
            V+   + Y S++DG  K G  +   VL   M   G   D + Y+ L++  C        
Sbjct: 590 GVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALC-------K 642

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
           +   + AL + ++        GV C  ++++Y  II+ + K+   D AK LF +M S G 
Sbjct: 643 QKKLNEALSILDQMTVS----GVKC--NIVAYTIIISEMIKEGKHDHAKSLFNEMISSGH 696

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
            P    Y+  I  YC +GRI++A  L   +E +G  PD  +YN  IN    +  ++ A S
Sbjct: 697 KPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMGYIDRAFS 756

Query: 371 LYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNC-LVD--GLCKSWRLRSAWE 427
               M+      D SC       +  L   K  L +++ N   VD  G+     L   W+
Sbjct: 757 TLKRMV------DASCEPNCWTYWLLL---KHFLKMSLINAHYVDTSGMWNWIELNMVWQ 807

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           L +++ ++G  P VVTY+ +I G C    +E+A  LL  M
Sbjct: 808 LLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHM 847



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 123/497 (24%), Positives = 203/497 (40%), Gaps = 85/497 (17%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           + +AL     M+H   +  + ++  L+  L  +    +   L + +   G++P   + N 
Sbjct: 265 VREALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNA 324

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           +++ +CK   + DA      + +   +PD  T   LI GLC  GK  EA  L    +A  
Sbjct: 325 MIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLC-GGKLDEAEELLNGAIA-- 381

Query: 188 CRPNVIPNVICYASIIDGLCK------------------------------DGFVNKVRV 217
                 P VI + ++I+G CK                              +  + K R+
Sbjct: 382 --RGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRL 439

Query: 218 -----LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
                   +M   G+ P+   Y S+I  YC         G   AALE+  + +   G   
Sbjct: 440 KEAKETLNEMFANGLAPNVVTYTSIIDGYC-------KVGMVGAALEVF-KLMEHEG--- 488

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
             CHP+  +Y S+I  L +D  + KA  L   M+  GI P V+ Y++LI G C     D+
Sbjct: 489 --CHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDN 546

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL------------YGEMISMGV 380
           A +LF  +E  G  PD  +YN L ++  K  + EEA S             Y  ++    
Sbjct: 547 AFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVRKGVVLTKVTYTSLVDGFS 606

Query: 381 RPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
           +  N+    AA L   + N   + DL  ++ L+  LCK  +L  A  +  ++   G + N
Sbjct: 607 KAGNTDF--AAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCN 664

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLH 482
           +V YT++I  +  EG  + A  L  +M                    KI    +A  L+ 
Sbjct: 665 IVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIG 724

Query: 483 KMAKRYVKPDEITVSIL 499
           +M +  V PD +T +I 
Sbjct: 725 EMERDGVTPDVVTYNIF 741



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 180/414 (43%), Gaps = 33/414 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L++A    N  I    TP + +F +L+      +   + + +   + +     D  +  
Sbjct: 368 KLDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYG 427

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +L+N   K   + +A   L  +     +P+VVT   +I G C  G    A  +F      
Sbjct: 428 VLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHE 487

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C PN       Y S+I GL +D  ++K   L   M+  GI P    Y +LI+  C    
Sbjct: 488 GCHPNAWT----YGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQC---- 539

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
               K     A  L  E +  NG       PD  +Y  + ++LCK     +A+E +  + 
Sbjct: 540 ---KKHEFDNAFRLF-EMMEQNG-----LTPDEQAYNVLTDALCKS---GRAEEAYSFLV 587

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            +G++   V Y+SL+DG+   G  D A  L   + +EGC  D  +Y+ L+ +  K +K+ 
Sbjct: 588 RKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLN 647

Query: 367 EALSLYGEMISMGVRPD--------NSCILE-----AAELFRTLHNTKFELDLTVFNCLV 413
           EALS+  +M   GV+ +        +  I E     A  LF  + ++  +   T +   +
Sbjct: 648 EALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFI 707

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
              CK  R+  A  L  ++ R G  P+VVTY + I G    G I++A+  L  M
Sbjct: 708 SSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMGYIDRAFSTLKRM 761



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 108/474 (22%), Positives = 174/474 (36%), Gaps = 96/474 (20%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L+ A+     M     TP + ++ +L+     K  + N   L E +   GL PD  + N
Sbjct: 508 KLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYN 567

Query: 127 ILMNCFCKMIGVSDAF---VALGRILRKV--------FS--------------------- 154
           +L +  CK     +A+   V  G +L KV        FS                     
Sbjct: 568 VLTDALCKSGRAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCK 627

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
            D+ T   L++ LC Q K  EA  +  +         V  N++ Y  II  + K+G  + 
Sbjct: 628 ADLYTYSVLLQALCKQKKLNEALSILDQMTV----SGVKCNIVAYTIIISEMIKEGKHDH 683

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA--------KGNTSAALELHEEFVN 266
            + LF +M   G  P A  Y   I  YC     E+A        +   +  +  +  F+N
Sbjct: 684 AKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFIN 743

Query: 267 GNGELGVI--------------CHPDVLSYCSIINSLCKDVLVDK--------------- 297
           G G +G I              C P+  +Y  ++    K  L++                
Sbjct: 744 GCGHMGYIDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYVDTSGMWNWIELN 803

Query: 298 -AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
              +L   M   G+ P VV YSS+I G+C   R+++A  L   +  +   P+   Y  LI
Sbjct: 804 MVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLI 863

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
                I+   +A+S   +MI  G +P                       L  ++ L+ GL
Sbjct: 864 KCCCDIKLFGKAVSFVTDMIEFGFQP----------------------QLESYHYLIVGL 901

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           C       A  LF  L       N V + ++  GL   G ++    LL  M+ +
Sbjct: 902 CDEGDYDRAKSLFCDLLGMDYNHNEVAWKILNDGLLKAGHVDFCSQLLAAMDNR 955



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 13/197 (6%)

Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
           + SL +  + +   +L+  +   G++PD V Y+++I  YC  G +  A + F  +   G 
Sbjct: 151 LRSLLRFDMTEYMGKLYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGM 210

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN-------------SCILEAAE 392
             DT + N L+  Y +   + +A  L   M  MG R +               C+ EA  
Sbjct: 211 QMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCEARCVREALV 270

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
           L   + +    L+L  +  L+ GLCK  R+  A  L  ++P  G  P+V TY  MI G C
Sbjct: 271 LVFMMVHDGCSLNLHTYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYC 330

Query: 453 IEGGIEKAYDLLPDMEE 469
             G ++ A  +   ME+
Sbjct: 331 KSGRMKDALGIKALMEQ 347



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 131/314 (41%), Gaps = 27/314 (8%)

Query: 57  LSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           +SE  K G+ +   +L  FN MI     P   ++   + +            L   +   
Sbjct: 672 ISEMIKEGKHDHAKSL--FNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERD 729

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC----MQGK 172
           G+ PD V+ NI +N    M  +  AF  L R++     P+  T   L++       +   
Sbjct: 730 GVTPDVVTYNIFINGCGHMGYIDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAH 789

Query: 173 FTEASGLFT--------KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224
           + + SG++         + +    +  + P V+ Y+SII G CK   + +  VL   M G
Sbjct: 790 YVDTSGMWNWIELNMVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLG 849

Query: 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCS 284
           + I P+  +Y  LI+  CC     D K    A       FV    E G    P + SY  
Sbjct: 850 KDISPNEEIYTMLIK--CCC----DIKLFGKAV-----SFVTDMIEFGF--QPQLESYHY 896

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           +I  LC +   D+AK LF D+       + V +  L DG    G +D   +L  ++++  
Sbjct: 897 LIVGLCDEGDYDRAKSLFCDLLGMDYNHNEVAWKILNDGLLKAGHVDFCSQLLAAMDNRH 956

Query: 345 CIPDTSSYNTLINS 358
           C  D+ SY+ L +S
Sbjct: 957 CRIDSESYSMLTDS 970


>gi|414875533|tpg|DAA52664.1| TPA: hypothetical protein ZEAMMB73_493958 [Zea mays]
          Length = 688

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 129/482 (26%), Positives = 208/482 (43%), Gaps = 56/482 (11%)

Query: 55  KYLSE-NSKSGEVELNDALCF--FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSE 111
           KY  E  ++   ++    LC   F  M      P +   N +L AL     + +   + E
Sbjct: 134 KYSKECKARDATLDTCSTLCLSAFREMASHGVAPDVKDCNHVLRALRDAARWDDICAVHE 193

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFS---PDVVTLGCLIRGLC 168
            +  +G+ P  V+ N L++ F K  G  D    L + +    S   P+ VT   +I GL 
Sbjct: 194 EMLQLGIEPSIVTYNTLLDSFLKE-GRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLT 252

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
            +G   EA+ L         R +   +   Y  +I GL   G V KV  L L+M+  GI 
Sbjct: 253 RKGDLEEAAELVEGM-----RLSKKASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIM 307

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           P    YN++I                S  +E  +        +G++  PDV++Y S++N 
Sbjct: 308 PTVVTYNAMIHGLL-----------QSGLVEAAQVKFAEMRAMGLL--PDVITYNSLLNG 354

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
            CK   + +A  LF D++  G+ P V+ Y+  IDGYC +G +++AR L   +  +GC+P+
Sbjct: 355 YCKAGNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPN 414

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------NSC-------ILEAAELFR 395
             +Y  L+     +  +  A   + EM+S G++PD        C       I  A EL  
Sbjct: 415 VCTYTILMKGSLNVCSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARALELRE 474

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            L       D   +N L+ GLCK+  L+ A EL  K+   G +P+ +TYT +I   C  G
Sbjct: 475 VLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERG 534

Query: 456 GIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVS 497
            + +A  +  +M                    +      A     KM +  V+P+EIT +
Sbjct: 535 LLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYN 594

Query: 498 IL 499
           +L
Sbjct: 595 VL 596



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 173/409 (42%), Gaps = 65/409 (15%)

Query: 75  FNYMIHMQPTPFMPS---FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131
           ++  + M+    MP+   +N+++  L               +  +GLLPD ++ N L+N 
Sbjct: 295 YDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNG 354

Query: 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
           +CK   + +A +  G + R   +P V+T    I G C  G   EA  L  +     C   
Sbjct: 355 YCKAGNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGC--- 411

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
            +PNV  Y  ++ G      +   R  F +M  +G+ PD F YN+ I    CA   E   
Sbjct: 412 -LPNVCTYTILMKGSLNVCSLAMAREFFDEMLSKGLQPDCFAYNTRI----CA---ELIL 463

Query: 252 GNTSAALELHE---------EFVNGNGELGVIC--------------------HPDVLSY 282
           G+ + ALEL E         + V  N  +  +C                     PD ++Y
Sbjct: 464 GDIARALELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITY 523

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
             +I++ C+  L+ +A+++F +M S G++P  V ++ +I  YC  G +  A   F  +  
Sbjct: 524 TCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLE 583

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF 402
           EG  P+  +YN LI++  ++ + + A   + EM+  G+  +                   
Sbjct: 584 EGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANK------------------ 625

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
                 +  L+DG CK      A   + ++ + G  P+ +T+  ++ G 
Sbjct: 626 ----YTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALVKGF 670



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 168/388 (43%), Gaps = 60/388 (15%)

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN 213
           +PDV     ++R L    ++ +   +  + +       + P+++ Y +++D   K+G  +
Sbjct: 166 APDVKDCNHVLRALRDAARWDDICAVHEEMLQL----GIEPSIVTYNTLLDSFLKEGRKD 221

Query: 214 KVRVLFLDM--KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGEL 271
           KV +L  +M  +G G  P+   YN +I            KG+   A EL E        +
Sbjct: 222 KVAMLLKEMETRGSGCLPNDVTYNVVI-------TGLTRKGDLEEAAELVEG-------M 267

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
            +       +Y  +I  L     V K  +L L+M++ GI+P VV Y+++I G    G ++
Sbjct: 268 RLSKKASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVE 327

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAA 391
            A+  F  + + G +PD  +YN+L+N Y K   ++EAL L+G++   G+ P         
Sbjct: 328 AAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPT-------- 379

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG- 450
                         +  +N  +DG C+   L  A  L +++   G  PNV TYT+++ G 
Sbjct: 380 --------------VLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGS 425

Query: 451 --LCIEGGIEKAYD------LLPD---------MEEKIRECLKAIELLHKMAKRYVKPDE 493
             +C      + +D      L PD          E  + +  +A+EL   +    +  D 
Sbjct: 426 LNVCSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARALELREVLMLEGISSDT 485

Query: 494 ITVSILEELLNKDENCHECMNLLPSFLS 521
           +T +IL   L K  N  +   L    +S
Sbjct: 486 VTYNILIHGLCKTGNLKDAKELQMKMVS 513


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 174/382 (45%), Gaps = 39/382 (10%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           S+ +++  LA  K       L E L T G  P+ V+   +++   K   + D       +
Sbjct: 110 SYTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEM 169

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
                 P   T   +I GLC      +A  +F + V   C    +P+ I Y ++IDG  K
Sbjct: 170 SGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGC----VPDTITYTTLIDGFSK 225

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
              +++ R L   M  +G  P A  Y S++  +C      +AK           E +   
Sbjct: 226 ASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAK-----------EVIAQM 274

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
            E G  C P +  + S+++        ++A ++  +M +RG  PDV++Y+SLID     G
Sbjct: 275 RERG--CEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTG 332

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL 388
           R+ +AR +F S+  +GC PD  +Y T+I ++SKI  VE A  +   M   GV PD  C  
Sbjct: 333 RVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPD--CF- 389

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
                               +N L+DG  K  R+  A+ ++ ++   G +PN VT+ V++
Sbjct: 390 -------------------AYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLM 430

Query: 449 CGLCIEGGIEKAYDLLPDMEEK 470
            GL  +G  ++A+ L  +M EK
Sbjct: 431 HGLFKDGKTDRAFSLFKEMLEK 452



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 167/394 (42%), Gaps = 61/394 (15%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
           P +V+   +I GL    K  EA   F   +   C P+VI     + ++I G CK G   +
Sbjct: 5   PTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVI----AFTTLIHGFCKAG-QPQ 59

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
           V    L+   +   PD F+Y S+I  YC A + +            +   V     L   
Sbjct: 60  VGHKLLNQALKRFRPDVFLYTSVIHGYCKAGDLDTG----------YFRAVTPKASL--- 106

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
              DV+SY ++I  L     +D+A ELF ++K+ G  P+VV Y+++IDG    GRI+D  
Sbjct: 107 ---DVISYTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGL 163

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
           K F  +    C+P  ++Y  +I+   K + + +A  ++ +M+  G  PD           
Sbjct: 164 KNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDT---------- 213

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
                         +  L+DG  K+ ++  A +L   +   GPEP  VTY  ++ G C  
Sbjct: 214 ------------ITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKL 261

Query: 455 GGIEKAYDLLPDMEEKIRE------------------CLKAIELLHKMAKRYVKPDEITV 496
             I +A +++  M E+  E                    +A ++L +M  R   PD I  
Sbjct: 262 DMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILY 321

Query: 497 SILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           + L +LL       E  ++  S + +      LT
Sbjct: 322 TSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALT 355



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 113/456 (24%), Positives = 191/456 (41%), Gaps = 58/456 (12%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G +E  D L  F  M      P   ++  ++  L   +   +   + E++   G +PD
Sbjct: 155 KAGRIE--DGLKNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPD 212

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            ++   L++ F K   + +A   L  +L K   P  VT G ++ G C      EA  +  
Sbjct: 213 TITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIA 272

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           +     C     P +  + S++      G   +   +  +M  RG  PD  +Y SLI + 
Sbjct: 273 QMRERGCE----PGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLL 328

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
                   + G    A  + +  +         C PD L+Y +II +  K   V+ A E+
Sbjct: 329 F-------STGRVPEARHVFDSMIEKG------CAPDALTYGTIIQNFSKIGNVEAAGEI 375

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
              M   G+ PD   Y+SL+DGY  + R+D A  ++  + + G  P+  ++N L++   K
Sbjct: 376 LELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFK 435

Query: 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
             K + A SL+ EM            LE  E+  TL +         +  L+DGL K+ R
Sbjct: 436 DGKTDRAFSLFKEM------------LEKEEVPPTLVS---------YTILIDGLGKAGR 474

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM-------EEKIREC 474
           +  A+  F+++   G  P   TYT +I  L   G I +A  L+ DM       + +    
Sbjct: 475 VSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSA 534

Query: 475 L-----------KAIELLHKMAKRYVKPDEITVSIL 499
           L            A ++  +M KR   P+E+T  +L
Sbjct: 535 LITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVL 570



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 103/467 (22%), Positives = 187/467 (40%), Gaps = 71/467 (15%)

Query: 116 IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG---- 171
           +G  P  VS N +++    +  + +A+     ++     PDV+    LI G C  G    
Sbjct: 1   MGCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQV 60

Query: 172 ----------KFTEASGLFTKFVAFDCR-------------PNVIPNVICYASIIDGLCK 208
                     +F     L+T  +   C+             P    +VI Y ++I GL  
Sbjct: 61  GHKLLNQALKRFRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLDVISYTTVIKGLAD 120

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
              +++   LF ++K  G  P+   Y ++I     A   ED   N        EE     
Sbjct: 121 SKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKN-------FEEMS--- 170

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
              G  C P   +Y  +I+ LCK  ++  A ++F  M  +G +PD + Y++LIDG+    
Sbjct: 171 ---GSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKAS 227

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP------ 382
           ++D+ARKL   + ++G  P   +Y ++++ + K++ + EA  +  +M   G  P      
Sbjct: 228 KMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFT 287

Query: 383 -------DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
                        EA ++   +       D+ ++  L+D L  + R+  A  +F  +   
Sbjct: 288 SLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEK 347

Query: 436 GPEPNVVTYTVMICGLCIEGGIEK------------------AYDLLPDMEEKIRECLKA 477
           G  P+ +TY  +I      G +E                   AY+ L D   K+    +A
Sbjct: 348 GCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQA 407

Query: 478 IELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQ 524
             +  +M    +KP+ +T ++L   L KD       +L    L + +
Sbjct: 408 FGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEE 454



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 108/222 (48%), Gaps = 16/222 (7%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           E +   G+ PD  + N LM+ + K+  V  AF    R++     P+ VT   L+ GL   
Sbjct: 377 ELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKD 436

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           GK   A  LF + +    +  V P ++ Y  +IDGL K G V++  + F +M  RGI P+
Sbjct: 437 GKTDRAFSLFKEMLE---KEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPE 493

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
              Y SLI     A    +AK       +L E+ V    +LGV  +PDV +Y ++I  L 
Sbjct: 494 CHTYTSLIYSLAKAGRIPEAK-------KLVEDMV----KLGV--NPDVQAYSALITGLI 540

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
              +VD A ++F +M  RG  P+ V Y  L  G+   GR  D
Sbjct: 541 DSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRALD 582



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 121/266 (45%), Gaps = 28/266 (10%)

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
           C P ++SY ++I+ L     +D+A + F  M   G  PDV+ +++LI G+C  G+     
Sbjct: 3   CEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGH 62

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVE----------EALSLYGEMISMGVRPDN 384
           KL ++   +   PD   Y ++I+ Y K   ++           +L +      +    D+
Sbjct: 63  KL-LNQALKRFRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLDVISYTTVIKGLADS 121

Query: 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
             I EA ELF  L       ++  +  ++DGL K+ R+    + F+++      P   TY
Sbjct: 122 KRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTY 181

Query: 445 TVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLN 504
           TV+I GLC      KA  +LPD          A ++  +M ++   PD IT + L +  +
Sbjct: 182 TVVIDGLC------KA-QMLPD----------ACKVFEQMVQKGCVPDTITYTTLIDGFS 224

Query: 505 KDENCHECMNLLPSFLSRNQEESKLT 530
           K     E   LL   L++  E + +T
Sbjct: 225 KASKMDEARKLLDVMLTKGPEPTAVT 250


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 169/355 (47%), Gaps = 51/355 (14%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFS-----PDVVTLGCLIRGLCMQGKFT 174
           PD VS   L+N  CK+  V  AF     + RK+ +     P+  T   L+ GLC Q +  
Sbjct: 44  PDVVSYTTLINGLCKLGRVDAAF----DLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLD 99

Query: 175 EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVY 234
            A  +    +A   + +  P+V+ Y +++  L + G V++    F  M   G  P    +
Sbjct: 100 AARAV----IAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSF 155

Query: 235 NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294
           N++I   C A    DA       LE+  E ++ +       HP++++Y  +I+ LCK   
Sbjct: 156 NAIITGLCRARRLADA-------LEVFNEMIDRD------FHPNLVTYSVVIDGLCKSDQ 202

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           +D+A++L   M S G  PD+V Y+ L+ G+   GR+D A  L   + S+GCIPD  +Y  
Sbjct: 203 LDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTV 262

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           +I+   K+ +V+                      +A E+FR L   K   ++  ++ L+ 
Sbjct: 263 VIDKLCKVGRVD----------------------DAHEIFRELVANKCSPNVVTYSALIG 300

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           G C++ R+    ++ +++      PNVVTY  MI GL +    E+AY +  +M E
Sbjct: 301 GYCRASRVDEGGKVMREM---ACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSE 352



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 152/338 (44%), Gaps = 50/338 (14%)

Query: 78  MIHMQPTPFMPSFNSLLGALAG-KKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMI 136
           + H QP   + S+ +L+  L    +    F    + +   G  P+  + N L++  CK  
Sbjct: 39  LAHAQPD--VVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQD 96

Query: 137 GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK---------FVAFD 187
            +  A   +    ++ F+PDVVT   L+  L   G+  EA   FT+          V+F+
Sbjct: 97  RLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFN 156

Query: 188 ------CRPNVI----------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225
                 CR   +                PN++ Y+ +IDGLCK   +++ + L   M   
Sbjct: 157 AIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSE 216

Query: 226 GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSI 285
           G  PD   Y  L+  +        A G   +AL L    V+        C PDV++Y  +
Sbjct: 217 GCRPDLVAYTPLVLGF-------SAAGRLDSALGLLRRMVSQG------CIPDVVTYTVV 263

Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
           I+ LCK   VD A E+F ++ +    P+VV YS+LI GYC   R+D+  K+   +    C
Sbjct: 264 IDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKV---MREMAC 320

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            P+  +YNT+I   S +++ EEA  ++ EM   G  PD
Sbjct: 321 RPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPD 358



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 129/287 (44%), Gaps = 20/287 (6%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
            P + ++N+L+ AL         +    ++   G +P  VS N ++   C+   ++DA  
Sbjct: 114 APDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALE 173

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
               ++ + F P++VT   +I GLC   +  EA  L  + V+  CRP+++     Y  ++
Sbjct: 174 VFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVA----YTPLV 229

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
            G    G ++    L   M  +G  PD   Y  +I   C     +DA        E+  E
Sbjct: 230 LGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAH-------EIFRE 282

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
            V         C P+V++Y ++I   C+   VD+  ++  +M  R   P+VV Y+++I G
Sbjct: 283 LVANK------CSPNVVTYSALIGGYCRASRVDEGGKVMREMACR---PNVVTYNTMIWG 333

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
             ++ R ++A  +F  +   G +PD  +Y  L  +   I+     L+
Sbjct: 334 LSMVDRNEEAYGMFREMSECGFVPDARTYRGLKRALRMIDHPPHVLT 380



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 96/224 (42%), Gaps = 42/224 (18%)

Query: 318 SSLIDGYCLMGRIDDARKLF-VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
           S ++ G C  GR+  A + F  S+E     PD  SY TLIN   K+ +V+ A  L+ +M+
Sbjct: 14  SIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMV 73

Query: 377 SMG-VRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
           + G  RP+                         +N LVDGLCK  RL +A  +  +  + 
Sbjct: 74  AAGGCRPNA----------------------FTYNALVDGLCKQDRLDAARAVIAEARKR 111

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKA 477
              P+VVTY  ++  L   G +++A      M E                  + R    A
Sbjct: 112 DFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADA 171

Query: 478 IELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
           +E+ ++M  R   P+ +T S++ + L K +   E   LL   +S
Sbjct: 172 LEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVS 215



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 7/173 (4%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L++A    + M+     P + ++  L+   +      + + L  R+ + G +PD V+  
Sbjct: 202 QLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYT 261

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           ++++  CK+  V DA      ++    SP+VVT   LI G C   +  E   +  +    
Sbjct: 262 VVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMA-- 319

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
            CRPNV+     Y ++I GL       +   +F +M   G  PDA  Y  L R
Sbjct: 320 -CRPNVVT----YNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLKR 367


>gi|358346655|ref|XP_003637381.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503316|gb|AES84519.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1023

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 132/531 (24%), Positives = 228/531 (42%), Gaps = 86/531 (16%)

Query: 8   TSRTAFKVKPSSSLRNSKKPISLNSENEPSSLHSNSVSTVEEKTKLLK---------YLS 58
           T+   F   P + LR    P  + +    S +H +S+     KT L           YL+
Sbjct: 13  TNTLIFFFSPPTRLRRFFYPTPI-TRTFSSQIHKDSIFIPPTKTHLYVSFFCTLIRLYLT 71

Query: 59  ENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGL 118
            +        + A   F++M  +   P +P +N+LL              +   +   G+
Sbjct: 72  HD------RFSTASATFSHMRALGLVPTLPFWNTLLYQFNASGLVSQVKLMYSDMLFCGV 125

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRK-VFSPDVVTLGCLIRGLCMQGKFTEAS 177
           +PD  S+N+L++  CK   V D  +ALG +    V   D VT   +I G C +G   +  
Sbjct: 126 VPDVFSVNVLVHSLCK---VGDLDLALGYLRNNDVVDIDNVTYNTVIWGFCQKGLVDQGF 182

Query: 178 GLFTKFVA----FD-----------CR----------------PNVIPNVICYASIIDGL 206
           GL ++ V     FD           CR                  V  +VI   ++IDG 
Sbjct: 183 GLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLVDGGVTKDVIGLNTLIDGY 242

Query: 207 CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN--------------WEDAKG 252
           C+ G +++   L  +     +  D   YN+L++ +C   +              W+D   
Sbjct: 243 CEAGLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGDLTRAESLFNEILGFWKDEDR 302

Query: 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
             +  +    E  N          P +++Y ++I + CK V V+++  L+  M   GI+P
Sbjct: 303 LKNNDVVTQNEIKN--------LQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMP 354

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
           DVV  SS++ G+C  G++ +A  LF  +   G  P+  SY T+INS  K  +V EA +L 
Sbjct: 355 DVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQ 414

Query: 373 GEMISMGVRPD-NSCIL------------EAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            +M+  G+  D  +C              EA E+F T+       +   ++ L+DG CK 
Sbjct: 415 SQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKL 474

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            ++  A  + +K+ +    PNV+T++ +I G   +G + KA D+L +M ++
Sbjct: 475 GKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQR 525



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 112/419 (26%), Positives = 183/419 (43%), Gaps = 73/419 (17%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           L P  V+   L+  +CK +GV ++     +++     PDVVT   ++ G C  GK TEA+
Sbjct: 317 LQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAA 376

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            LF +         + PN + YA+II+ L K G V +   L   M  RGI  D     ++
Sbjct: 377 VLFREMYEM----GLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTV 432

Query: 238 IRVYCCAVNWEDAKGNTSAALEL--------HEEFVNGNGELGVI--------------C 275
           +         ++A+      L+L        +   ++G  +LG +               
Sbjct: 433 MDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHV 492

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC---------- 325
            P+V+++ SIIN   K  ++ KA ++  +M  R ++P+ +VY+ LIDGY           
Sbjct: 493 PPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADD 552

Query: 326 -------------------------LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
                                     +GR+D+AR L + + S+G  PD  +Y +LI+ Y 
Sbjct: 553 FCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYF 612

Query: 361 KIEKVEEALSLYGEMISMGVRPD----NSCILEAAELF----RTLHNTKFELDLT----V 408
           K      ALS+  EM    +R D    N+ I     L     R + +   EL L      
Sbjct: 613 KEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPRYVCSRMIELGLAPDCIT 672

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +N +++  C   +   A ++  ++  YG  PN VTY ++I GLC  G +EKA   L +M
Sbjct: 673 YNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGAVEKAESALDEM 731



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 102/420 (24%), Positives = 179/420 (42%), Gaps = 96/420 (22%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           E +  + L P+ V+ + L++ +CK+  +  A + L ++ ++   P+V+T   +I G   +
Sbjct: 450 ETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKK 509

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDG------------LCKD--------- 209
           G  ++A  +  + V    + NV+PN I YA +IDG             CK+         
Sbjct: 510 GMLSKAVDVLREMV----QRNVMPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEES 565

Query: 210 --------------GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTS 255
                         G +++ R L +DM  +GI PD   Y SLI  Y         +GN  
Sbjct: 566 NVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYF-------KEGNQL 618

Query: 256 AALELHEEFVNGNGELGVICH----------------------------PDVLSYCSIIN 287
           AAL + +E    N    V+ +                            PD ++Y +IIN
Sbjct: 619 AALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPRYVCSRMIELGLAPDCITYNTIIN 678

Query: 288 SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
           + C     + A ++  +MKS GI+P+ V Y+ LI G C  G ++ A      +     +P
Sbjct: 679 TYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGAVEKAESALDEMLVMEFVP 738

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLT 407
              ++  L+ +YS+ EK ++ L ++ ++++ G+                      EL LT
Sbjct: 739 TPITHKFLVKAYSRSEKADKILQIHEKLVASGL----------------------ELSLT 776

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           V+N L+   C+    R A  +  ++ + G   ++VTY  +I G C    +EKA      M
Sbjct: 777 VYNTLITVFCRLGMTRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQM 836



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 108/444 (24%), Positives = 188/444 (42%), Gaps = 84/444 (18%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+  D + LN L++ +C+   +S A   +    R     D+VT   L++  C  G  T A
Sbjct: 227 GVTKDVIGLNTLIDGYCEAGLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGDLTRA 286

Query: 177 SGLFTKFVAF---------------DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD 221
             LF + + F               +   N+ P ++ Y ++I   CK   V +   L+  
Sbjct: 287 ESLFNEILGFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEESHSLYKK 346

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
           M   GI PD    +S++  +C         G  + A  L  E      E+G+   P+ +S
Sbjct: 347 MIMNGIMPDVVTCSSILYGFC-------RHGKLTEAAVLFREMY----EMGL--DPNHVS 393

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGI------------------------------- 310
           Y +IINSL K   V +A  L   M  RGI                               
Sbjct: 394 YATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETIL 453

Query: 311 ----IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
                P+ V YS+L+DGYC +G+++ A  +   +E E   P+  +++++IN Y+K   + 
Sbjct: 454 KLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLS 513

Query: 367 EALSLYGEMISMGVRPDN---SCILE----------AAELFRTLHNTKFELDLTVFNCLV 413
           +A+ +  EM+   V P+    + +++          A +  + + + + E    +F+ L+
Sbjct: 514 KAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILL 573

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-IR 472
           + L +  R+  A  L   +   G +P++V Y  +I G   EG    A  ++ +M+EK IR
Sbjct: 574 NNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNIR 633

Query: 473 -------ECLKAIELLHKMAKRYV 489
                    +K +  L K   RYV
Sbjct: 634 FDVVAYNALIKGLLRLGKYDPRYV 657



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 151/347 (43%), Gaps = 35/347 (10%)

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           D V+ N L+    ++ G  D      R++    +PD +T   +I   C++GK  +A  + 
Sbjct: 635 DVVAYNALIKGLLRL-GKYDPRYVCSRMIELGLAPDCITYNTIINTYCIKGKTEDALDIL 693

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            +  ++     ++PN + Y  +I GLCK G V K      +M      P    +  L++ 
Sbjct: 694 NEMKSY----GIMPNAVTYNILIGGLCKTGAVEKAESALDEMLVMEFVPTPITHKFLVKA 749

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
           Y  +   E A       L++HE+ V    EL +        Y ++I   C+  +  KAK 
Sbjct: 750 YSRS---EKA----DKILQIHEKLVASGLELSLTV------YNTLITVFCRLGMTRKAKV 796

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           +  +M  RGI  D+V Y++LI GYC    ++ A K +  +  +G  P+ ++YNTL+   S
Sbjct: 797 VLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQMFVDGIAPNITTYNTLLGGLS 856

Query: 361 K----IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK-------------FE 403
                 E +EE   L  EM   G+ P+ +        +  + N K             F 
Sbjct: 857 NAGLMEEMMEETEKLVSEMNERGLVPNAATYDILVSGYGRVGNRKKTIILHIEMITKGFV 916

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
             L  +N L+    KS ++  A EL   L   G  PN  TY ++ CG
Sbjct: 917 PTLKTYNVLISDYAKSGKMIEARELLNDLLTKGRIPNSFTYDILTCG 963



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 150/314 (47%), Gaps = 27/314 (8%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           MI +   P   ++N+++     K    + + +   + + G++P+ V+ NIL+   CK   
Sbjct: 661 MIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGA 720

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           V  A  AL  +L   F P  +T   L++      K  +   +  K VA      +  ++ 
Sbjct: 721 VEKAESALDEMLVMEFVPTPITHKFLVKAYSRSEKADKILQIHEKLVA----SGLELSLT 776

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            Y ++I   C+ G   K +V+  +M  RGI  D   YN+LIR YC   + E A    S  
Sbjct: 777 VYNTLITVFCRLGMTRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYS-- 834

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL----VDKAKELFLDMKSRGIIPD 313
               + FV+G         P++ +Y +++  L    L    +++ ++L  +M  RG++P+
Sbjct: 835 ----QMFVDG-------IAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPN 883

Query: 314 VVVYSSLIDGYCLMGRIDDARK---LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
              Y  L+ GY   GR+ + +K   L + + ++G +P   +YN LI+ Y+K  K+ EA  
Sbjct: 884 AATYDILVSGY---GRVGNRKKTIILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARE 940

Query: 371 LYGEMISMGVRPDN 384
           L  ++++ G  P++
Sbjct: 941 LLNDLLTKGRIPNS 954



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 117/267 (43%), Gaps = 23/267 (8%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G VE  ++      ++   PTP    F  L+ A +  +     + + E+L   GL   
Sbjct: 717 KTGAVEKAESALDEMLVMEFVPTPITHKF--LVKAYSRSEKADKILQIHEKLVASGLELS 774

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
               N L+  FC++     A V L  ++++  S D+VT   LIRG C      +A   ++
Sbjct: 775 LTVYNTLITVFCRLGMTRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYS 834

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRV----LFLDMKGRGIYPDAFVYNSL 237
           +         + PN+  Y +++ GL   G + ++      L  +M  RG+ P+A  Y+ L
Sbjct: 835 QMFV----DGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDIL 890

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           +  Y          GN    + LH E +      G +  P + +Y  +I+   K   + +
Sbjct: 891 VSGY-------GRVGNRKKTIILHIEMITK----GFV--PTLKTYNVLISDYAKSGKMIE 937

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGY 324
           A+EL  D+ ++G IP+   Y  L  G+
Sbjct: 938 ARELLNDLLTKGRIPNSFTYDILTCGW 964


>gi|357447159|ref|XP_003593855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355482903|gb|AES64106.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 790

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 116/433 (26%), Positives = 193/433 (44%), Gaps = 50/433 (11%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +   G+ PD    N  +    K   +  A   L R+      PD+V+  CLI+G C   +
Sbjct: 258 MQKAGVEPDLSICNTAIYVLVKGNKLEKALRFLERMKVAGIEPDIVSYNCLIKGYCDVHR 317

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM-KGRGIYPDA 231
             +A  L  +     C P+ +     Y +++  LCKD  V +V+ L  +M +   + PD 
Sbjct: 318 IDDALELIAEMPFKGCPPDKVS----YYTVMAFLCKDRKVEEVKRLMENMVQNSNLIPDQ 373

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
             YN+LI             G+   AL     F+    E G   H D + Y ++++S CK
Sbjct: 374 VTYNTLIYAL-------SKHGHADDALV----FLREAEEKGF--HIDKVGYSAVVDSFCK 420

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
           +  +DKAK L +DM S+G  PDVV Y+++IDG+C +G+ID+A+K+   +   GC P+T +
Sbjct: 421 NKNIDKAKSLVIDMYSKGCNPDVVTYTAIIDGFCRVGKIDEAKKMLQQMYKHGCKPNTVT 480

Query: 352 YNTLINSYSKIEKVEEALSLYG--------------EMISMGVRPDNSCILEAAELFRTL 397
           Y  L+N      K  EA  +                  +  G+R +   + EA +L R +
Sbjct: 481 YTVLLNGLCHNGKSLEAREMINVSEEHWWTPNAITYSAVMHGLRREGK-LSEACDLTREM 539

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
               F  +    N L+  LC++  +  A +  ++    G   NVV +T +I G C  G +
Sbjct: 540 IEKGFLPNPVDINLLIQSLCRNQNVVGAKKYLEECLHKGCAVNVVNFTSVIYGFCQIGDL 599

Query: 458 EKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLP 517
           + A  +L DM                ++ ++  PD IT + L + L K     E   L+ 
Sbjct: 600 DAALSMLEDM---------------YLSNKH--PDAITYTTLFDALGKKSRLDEASELIV 642

Query: 518 SFLSRNQEESKLT 530
             L +  + + +T
Sbjct: 643 KMLGKGIDPTPVT 655



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 147/358 (41%), Gaps = 67/358 (18%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P   ++N+L+ AL+   +  + +         G   D V  + +++ FCK   +  A   
Sbjct: 371 PDQVTYNTLIYALSKHGHADDALVFLREAEEKGFHIDKVGYSAVVDSFCKNKNIDKAKSL 430

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI----------- 193
           +  +  K  +PDVVT   +I G C  GK  EA  +  +     C+PN +           
Sbjct: 431 VIDMYSKGCNPDVVTYTAIIDGFCRVGKIDEAKKMLQQMYKHGCKPNTVTYTVLLNGLCH 490

Query: 194 --------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233
                               PN I Y++++ GL ++G +++   L  +M  +G  P+   
Sbjct: 491 NGKSLEAREMINVSEEHWWTPNAITYSAVMHGLRREGKLSEACDLTREMIEKGFLPNPVD 550

Query: 234 YNSLIRVYC-------------------CAVNWEDAK---------GNTSAALELHEEFV 265
            N LI+  C                   CAVN  +           G+  AAL + E+  
Sbjct: 551 INLLIQSLCRNQNVVGAKKYLEECLHKGCAVNVVNFTSVIYGFCQIGDLDAALSMLEDMY 610

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
             N       HPD ++Y ++ ++L K   +D+A EL + M  +GI P  V Y ++I  +C
Sbjct: 611 LSNK------HPDAITYTTLFDALGKKSRLDEASELIVKMLGKGIDPTPVTYRAVIHRFC 664

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
             GR+DD  KL   + +    P  + YN +I         EEA  L G+++    + D
Sbjct: 665 QWGRVDDMMKLLEKMIARQ--PFKTVYNQVIEKLCYFGNREEAEKLLGKVLRTASKLD 720



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 22/190 (11%)

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           D + Y ++++ L K  L   A+ +   M  RGI      +S ++  Y   G + +A ++ 
Sbjct: 196 DAIVYYTMLDILSKTRLCQGARRILRLMTRRGIERSPEAFSYVMVSYSRAGMLRNALRIL 255

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397
             ++  G  PD S  NT I    K  K+E+AL     M   G+ P               
Sbjct: 256 TLMQKAGVEPDLSICNTAIYVLVKGNKLEKALRFLERMKVAGIEP--------------- 300

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                  D+  +NCL+ G C   R+  A EL  ++P  G  P+ V+Y  ++  LC +  +
Sbjct: 301 -------DIVSYNCLIKGYCDVHRIDDALELIAEMPFKGCPPDKVSYYTVMAFLCKDRKV 353

Query: 458 EKAYDLLPDM 467
           E+   L+ +M
Sbjct: 354 EEVKRLMENM 363



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 113/298 (37%), Gaps = 24/298 (8%)

Query: 51  TKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLS 110
           T LL  L  N KS E     A    N       TP   ++++++  L  +        L+
Sbjct: 482 TVLLNGLCHNGKSLE-----AREMINVSEEHWWTPNAITYSAVMHGLRREGKLSEACDLT 536

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
             +   G LP+ V +N+L+   C+   V  A   L   L K  + +VV    +I G C  
Sbjct: 537 REMIEKGFLPNPVDINLLIQSLCRNQNVVGAKKYLEECLHKGCAVNVVNFTSVIYGFCQI 596

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G    A  +           N  P+ I Y ++ D L K   +++   L + M G+GI P 
Sbjct: 597 GDLDAALSMLEDMYL----SNKHPDAITYTTLFDALGKKSRLDEASELIVKMLGKGIDPT 652

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
              Y ++I  +C    W    G     ++L E+ +           P    Y  +I  LC
Sbjct: 653 PVTYRAVIHRFC---QW----GRVDDMMKLLEKMIAR--------QPFKTVYNQVIEKLC 697

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
                ++A++L   +       D      LI+ Y + G    A K+   +     IPD
Sbjct: 698 YFGNREEAEKLLGKVLRTASKLDAKTCHILIESYLIDGNALSAYKVACQMFRRNLIPD 755


>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
          Length = 793

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 174/385 (45%), Gaps = 40/385 (10%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL-PDFVSLNILMNCFCKMIGVSDAFV 143
           P + ++N L   L           L + +  +G++ PD V+ N L++   K    SDA  
Sbjct: 312 PDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALN 371

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
            L  +  K     +VT   +++GLC +G+  EA G             + P+VI Y ++I
Sbjct: 372 LLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMT----EEGLTPDVITYNTLI 427

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
           D  CK G V K  VL  +M   G+  D F  N+L+   C    +E+A           EE
Sbjct: 428 DASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEA-----------EE 476

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
            +    + G +  PD +SY +++ +  K+   + A  L+ +M  R + P +  Y++LI G
Sbjct: 477 LLRAPPQRGFV--PDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKG 534

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
              MG++ +A      +   G +PD ++YN +I++Y K   +E+A   + +M+    +PD
Sbjct: 535 LSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPD 594

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                                 +   N L++GLC   RL  A +LF+     G + +V+T
Sbjct: 595 ----------------------VVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVIT 632

Query: 444 YTVMICGLCIEGGIEKAYDLLPDME 468
           Y  +I  LC +  ++ A     DME
Sbjct: 633 YNTLIQALCKDNDVDTALRFFADME 657



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 114/479 (23%), Positives = 205/479 (42%), Gaps = 49/479 (10%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLS--ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142
           P + + N++L ALA          L     L  + L P+  + N+L++  C    ++DA 
Sbjct: 170 PSLQAANAVLSALARSPSTSPQASLDAFHSLIALRLHPNHYTFNLLVHTHCSKGTLADAL 229

Query: 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202
             L ++     SPD VT   L+   C +G   EA  L  +      +  ++P    Y ++
Sbjct: 230 STLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARMK----KEGIVPTRATYNTL 285

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
           +    + G++ +   +   M   G  PD + YN L    C A       G    A +L +
Sbjct: 286 VSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQA-------GKVDEAFKLKD 338

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
           E      +LG++  PDV++Y +++++  K      A  L  +M+ +G+   +V ++ ++ 
Sbjct: 339 EM----EQLGIVS-PDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVK 393

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
           G C  G++++A      +  EG  PD  +YNTLI++  K   V +A  L  EM+  G++ 
Sbjct: 394 GLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKM 453

Query: 383 D---------NSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
           D         N C      EA EL R      F  D   +  ++    K ++   A  L+
Sbjct: 454 DTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLW 513

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KI 471
            ++ +    P++ TY  +I GL   G + +A D L ++ E                  K 
Sbjct: 514 DEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKE 573

Query: 472 RECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
            +  KA +  +KM +   KPD +T + L   L       + M L  S++ + ++   +T
Sbjct: 574 GDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVIT 632



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 145/299 (48%), Gaps = 22/299 (7%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           ALC ++ MI  + TP + ++N+L+  L+        I     L  +GL+PD  + NI+++
Sbjct: 509 ALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIH 568

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
            +CK   +  AF    +++   F PDVVT   L+ GLC+ G+  +A  LF  +V    + 
Sbjct: 569 AYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKK- 627

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
               +VI Y ++I  LCKD  V+     F DM+ RG+ PD F YN L+          +A
Sbjct: 628 ---VDVITYNTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLLSA------LSEA 678

Query: 251 KGNTSAALELHEEFVNGNGEL-GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
             +  A   LH+  +N +G+L G   +P        I S  + V   K  E+  D++S G
Sbjct: 679 GRSVEAQKMLHK--LNESGKLYGRFFYPS-------IKSSVEAVETGKDPEVKSDIESVG 729

Query: 310 IIP--DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
                D   Y+  I   C+ G++ +A+ +   +  +G   D S+Y TL+    K +K +
Sbjct: 730 NTQGDDQESYNKYIKELCIGGQLKEAKAVLDEMMQKGMSVDNSTYITLMEGLIKRQKRQ 788



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 148/326 (45%), Gaps = 39/326 (11%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           E +   GL PD ++ N L++  CK   V+ AFV +  ++R     D  TL  L+  LC +
Sbjct: 409 EMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKE 468

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
            ++ EA  L         +   +P+ + Y +++    K+        L+ +M  R + P 
Sbjct: 469 KRYEEAEELLRA----PPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPS 524

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
              YN+LI+            G  + A++   E +    E+G++  PD  +Y  II++ C
Sbjct: 525 ISTYNTLIKGLSTM-------GKLTEAIDKLNELM----EMGLV--PDDTTYNIIIHAYC 571

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K+  ++KA +    M      PDVV  ++L++G CL GR++ A KLF S   +G   D  
Sbjct: 572 KEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVI 631

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFN 410
           +YNTLI +  K   V+ AL  + +M   G++P                      D+  +N
Sbjct: 632 TYNTLIQALCKDNDVDTALRFFADMEVRGLQP----------------------DVFTYN 669

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYG 436
            L+  L ++ R   A ++  KL   G
Sbjct: 670 VLLSALSEAGRSVEAQKMLHKLNESG 695



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 52/116 (44%)

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           L++S+ +   V  +L     ++S   R  ++    + + F +L   +   +   FN LV 
Sbjct: 158 LLHSFRRRGCVRPSLQAANAVLSALARSPSTSPQASLDAFHSLIALRLHPNHYTFNLLVH 217

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
             C    L  A     K+  +G  P+ VTY  ++   C +G + +A  LL  M+++
Sbjct: 218 THCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARMKKE 273


>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 122/490 (24%), Positives = 212/490 (43%), Gaps = 70/490 (14%)

Query: 51  TKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLS 110
           T  +K L+ + KS + +  ++L F  +M++    P +     L+      K     I + 
Sbjct: 78  TNFMKTLNRSCKSAKYD--ESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVM 135

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           E L   G  PD  + N +++ FCK   V  A   L R+ ++ F PDVVT   LI   C +
Sbjct: 136 EILEKHGK-PDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGR 194

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G+   A  +  + +  +C+    P VI Y  +I+     G +++   L  +M  RG+ PD
Sbjct: 195 GRLDLALRVMDQLLKDNCK----PTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPD 250

Query: 231 AFVYNSLIRVYCCAVNWEDA-------------KGNTSAALELHEEFVNGNGELGVI--- 274
            + YN ++   C     + A              G ++  + L +    G  E G     
Sbjct: 251 RYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMS 310

Query: 275 ------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                 C P+ ++Y ++I +LC+D  +D+AK +   MK + + PD   Y  LI   C  G
Sbjct: 311 DMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREG 370

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL 388
           ++D A +    + S G +PD  SYN+++ S  K    +EAL+++ ++  +G  P+     
Sbjct: 371 KVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGS-- 428

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
                               +N L   L  S     A  +  ++   G +P+ +TY  +I
Sbjct: 429 --------------------YNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLI 468

Query: 449 CGLCIEGGIEKAYDLLPDMEE-------------------KIRECLKAIELLHKMAKRYV 489
             LC +G +++A +LL DM E                   K++  + AIE+L  M     
Sbjct: 469 SCLCRDGLVDQAIELLVDMFESEKCQPTVISYNTVLLGLCKVQRIIDAIEVLAAMVNEGC 528

Query: 490 KPDEITVSIL 499
            P+E T ++L
Sbjct: 529 LPNETTYTLL 538



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/429 (23%), Positives = 179/429 (41%), Gaps = 51/429 (11%)

Query: 121 DFVSLNIL--MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
           DF   N +  +N  CK     ++   L  ++ + + PDV+    LI+G     K  +A  
Sbjct: 74  DFRDTNFMKTLNRSCKSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQ 133

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           +           +  P+V  Y ++I G CK   V+    +   MK RG  PD   YN LI
Sbjct: 134 VMEIL-----EKHGKPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILI 188

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
             +C        +G    AL + ++ +  N      C P V++Y  +I +      +D+A
Sbjct: 189 GNFC-------GRGRLDLALRVMDQLLKDN------CKPTVITYTILIEATITQGGIDEA 235

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
            +L  +M SRG+ PD   Y+ +++G C  G +D A +    I   GC+   S+YN L+  
Sbjct: 236 MKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRD 295

Query: 359 YSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELD 405
                K E    L  +M+  G  P+             +  I EA  + + +       D
Sbjct: 296 LLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPD 355

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
              ++ L+  LC+  ++  A E    +   G  P++++Y  ++  LC  G  ++A ++  
Sbjct: 356 GYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIFE 415

Query: 466 DMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDE 507
            + E                     + ++A+ ++ +M    + PDEIT + L   L +D 
Sbjct: 416 KLGEVGCPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLISCLCRDG 475

Query: 508 NCHECMNLL 516
              + + LL
Sbjct: 476 LVDQAIELL 484



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 170/380 (44%), Gaps = 62/380 (16%)

Query: 64  GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV 123
           G   L+ AL   + ++     P + ++  L+ A   +      + L + + + GL PD  
Sbjct: 193 GRGRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRY 252

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           + N+++N  CK   +  AF  L RI +      V T   L+R L  +GK+     L +  
Sbjct: 253 TYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDM 312

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC- 242
           +   C PN I     Y+++I  LC+DG +++ + +   MK + + PD + Y+ LI   C 
Sbjct: 313 LVKGCEPNPI----TYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCR 368

Query: 243 -----CAVNWED----------------------AKGNTSAALELHEEF----------- 264
                 A+ + D                        GN   AL + E+            
Sbjct: 369 EGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGS 428

Query: 265 -------VNGNGE----LGVICH-------PDVLSYCSIINSLCKDVLVDKAKELFLDM- 305
                  +  +G+    LG+I         PD ++Y S+I+ LC+D LVD+A EL +DM 
Sbjct: 429 YNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLISCLCRDGLVDQAIELLVDMF 488

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
           +S    P V+ Y++++ G C + RI DA ++  ++ +EGC+P+ ++Y  LI         
Sbjct: 489 ESEKCQPTVISYNTVLLGLCKVQRIIDAIEVLAAMVNEGCLPNETTYTLLIQGIGFAGWR 548

Query: 366 EEALSLYGEMISMGVRPDNS 385
            +A+ L   +++M    ++S
Sbjct: 549 YDAMELANLLVNMDAISEDS 568



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 36/198 (18%)

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK------ 401
           DT+   TL N   K  K +E+L     M++ G +PD   ++   +L +   N K      
Sbjct: 77  DTNFMKTL-NRSCKSAKYDESLYFLQHMVNRGYKPD---VILCTKLIKGFFNMKKIEKAI 132

Query: 402 --FEL-------DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
              E+       D+  +N ++ G CK+ R+  A ++  ++ + G EP+VVTY ++I   C
Sbjct: 133 QVMEILEKHGKPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFC 192

Query: 453 IEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHEC 512
             G ++ A                 + ++ ++ K   KP  IT +IL E         E 
Sbjct: 193 GRGRLDLA-----------------LRVMDQLLKDNCKPTVITYTILIEATITQGGIDEA 235

Query: 513 MNLLPSFLSRNQEESKLT 530
           M LL   LSR     + T
Sbjct: 236 MKLLDEMLSRGLRPDRYT 253


>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
          Length = 1263

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 123/497 (24%), Positives = 220/497 (44%), Gaps = 86/497 (17%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           +AL  +  M+     P + +++ L+ A   ++     + L   +   G+ P+  S  I +
Sbjct: 303 EALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICI 362

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
               +     +A+  L ++  +   PDV+T   LI+ LC  G+ ++A  +F K    D +
Sbjct: 363 RVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQK 422

Query: 190 PNVIP-------------------------------NVICYASIIDGLCKDGFVNKVRVL 218
           P+ +                                NV+ Y ++ID LC+ G V +   +
Sbjct: 423 PDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEM 482

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF-VNGNGELGVICHP 277
           F +MK +GI P+ + YNSLI  +  A  + D       ALEL +   ++G         P
Sbjct: 483 FDEMKQKGIVPEQYSYNSLISGFLKADRFGD-------ALELFKHMDIHGP-------KP 528

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           +  ++   IN   K     KA + +  MKS+GI+PDVV  ++++ G    GR+  A+++F
Sbjct: 529 NGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVF 588

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397
             +++ G  PDT +Y  +I   SK  K +EA+ ++ +MI      +N+C+          
Sbjct: 589 HELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMI------ENNCV---------- 632

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                  D+   N L+D L K+ R   AW +F +L     EP   TY  ++ GL  EG +
Sbjct: 633 ------PDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKV 686

Query: 458 EKAYDLLPDMEEK-----------IRECL-------KAIELLHKMAKRYVKPDEITVSIL 499
           ++   LL +M              I +CL        A+++L+ M  +   PD  + + +
Sbjct: 687 KEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTV 746

Query: 500 EELLNKDENCHECMNLL 516
              L K+E  +E  ++ 
Sbjct: 747 IYGLVKEERYNEAFSIF 763



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 126/459 (27%), Positives = 200/459 (43%), Gaps = 71/459 (15%)

Query: 62   KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
            K+G V  NDAL     M      P + S+N+++  L  ++ Y     +  ++  + L+PD
Sbjct: 717  KNGAV--NDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKV-LIPD 773

Query: 122  FVSLNILMNCFCKMIG--------VSDAFVALGR-------------ILRKV-------F 153
            + +L  ++  F K IG        + D F+  G              IL+K        F
Sbjct: 774  YATLCTILPSFVK-IGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEF 832

Query: 154  SPDVVTLGC---------LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
            +  + + G          LI+ LC Q K  EA  L  KF +F     V      Y S+I 
Sbjct: 833  AEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSF----GVSLKTGLYNSLIC 888

Query: 205  GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
            GL  +  ++    LF +MK  G  PD F YN L+     ++  E+        L++ EE 
Sbjct: 889  GLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEM-------LKVQEEM 941

Query: 265  VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
                 E         ++Y +II+ L K   +++A +L+ ++ S+G  P    Y  L+DG 
Sbjct: 942  HRKGYE------STYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGL 995

Query: 325  CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
               GRI+DA  LF  +   GC  + + YN L+N +      E+   L+ +M+  G+ PD 
Sbjct: 996  LKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDI 1055

Query: 385  S-------CILEAAEL------FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
                     + +A +L      FR L     E DL  +N L+DGL KS RL  A  LF +
Sbjct: 1056 KSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNE 1115

Query: 432  LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            + + G  PN+ TY  +I  L   G   +A  +  ++  K
Sbjct: 1116 MQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTK 1154



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 119/480 (24%), Positives = 199/480 (41%), Gaps = 50/480 (10%)

Query: 69   NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
            ++A   F  +  M   P   ++N+LL  L  +      + L E +      P+ ++ N +
Sbjct: 652  DEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTI 711

Query: 129  MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
            ++C CK   V+DA   L  +  K   PD+ +   +I GL  + ++ EA  +F +      
Sbjct: 712  LDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQM----- 766

Query: 189  RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD-MKGRGIYPDAFVYNSLIRVYCCAVNW 247
            +  +IP+     +I+    K G + +   +  D     G   D    +SL+         
Sbjct: 767  KKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGIL----- 821

Query: 248  EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
                    A +E   EF       G+    D    C +I  LCK     +A EL    KS
Sbjct: 822  ------KKAGIEKSIEFAEIIASSGITL--DDFFLCPLIKHLCKQKKALEAHELVKKFKS 873

Query: 308  RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
             G+     +Y+SLI G      ID A  LF  ++  GC PD  +YN L+++  K  ++EE
Sbjct: 874  FGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEE 933

Query: 368  ALSLYGEMISMGVRPD----NSCIL---------EAAELFRTLHNTKFELDLTVFNCLVD 414
             L +  EM   G        N+ I          +A +L+  L +  F      +  L+D
Sbjct: 934  MLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLD 993

Query: 415  GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK---- 470
            GL K+ R+  A  LF ++  YG + N   Y +++ G  I G  EK   L  DM ++    
Sbjct: 994  GLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINP 1053

Query: 471  --------IRECLKAIEL------LHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                    I    KA +L        ++ +  ++PD IT ++L + L K +   E ++L 
Sbjct: 1054 DIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLF 1113



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 141/313 (45%), Gaps = 17/313 (5%)

Query: 71   ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
            A   F  M  +   P   ++N LL A+         + + E ++  G    +V+ N +++
Sbjct: 899  AEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIIS 958

Query: 131  CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
               K   +  A      ++ + FSP   T G L+ GL   G+  +A  LF + + + C+ 
Sbjct: 959  GLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKA 1018

Query: 191  NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
            N       Y  +++G    G   KV  LF DM  +GI PD   Y  +I   C A    D 
Sbjct: 1019 NCT----IYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDG 1074

Query: 251  KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
                   LE+  E             PD+++Y  +I+ L K   +++A  LF +M+ +GI
Sbjct: 1075 LTYFRQLLEMGLE-------------PDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGI 1121

Query: 311  IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
            +P++  Y+SLI      G+  +A K++  + ++G  P+  +YN LI  YS     + A +
Sbjct: 1122 VPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYA 1181

Query: 371  LYGEMISMGVRPD 383
             YG MI  G  P+
Sbjct: 1182 AYGRMIVGGCLPN 1194



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 137/298 (45%), Gaps = 25/298 (8%)

Query: 90   FNSLLGALAGKKYYVNFICLSERL----NTIGLLPDFVSLNILMNCFCKMIGVSDAFVAL 145
            +NSL+  L  +    N I ++E L      +G  PD  + N+L++   K + + +     
Sbjct: 883  YNSLICGLVDE----NLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQ 938

Query: 146  GRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDG 205
              + RK +    VT   +I GL    +  +A  L+   ++        P    Y  ++DG
Sbjct: 939  EEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMS----QGFSPTPCTYGPLLDG 994

Query: 206  LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
            L K G +     LF +M   G   +  +YN L+       N     GNT     L ++ V
Sbjct: 995  LLKAGRIEDAENLFNEMLEYGCKANCTIYNILL-------NGHRIAGNTEKVCHLFQDMV 1047

Query: 266  NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
            +         +PD+ SY  II++LCK   ++     F  +   G+ PD++ Y+ LIDG  
Sbjct: 1048 DQG------INPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLG 1101

Query: 326  LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
               R+++A  LF  ++ +G +P+  +YN+LI    K  K  EA  +Y E+++ G +P+
Sbjct: 1102 KSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPN 1159



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 116/509 (22%), Positives = 195/509 (38%), Gaps = 82/509 (16%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           +AL  F+ M      P   S+NSL+        + + + L + ++  G  P+  +  + +
Sbjct: 478 EALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFI 537

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           N + K      A      +  K   PDVV    ++ GL   G+   A  +F +  A    
Sbjct: 538 NYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAM--- 594

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
             V P+ I Y  +I    K    ++   +F DM      PD    NSLI     A   ++
Sbjct: 595 -GVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDE 653

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
           A        E++ E  +G             +Y +++  L ++  V +   L  +M    
Sbjct: 654 AWRIFYQLKEMNLEPTDG-------------TYNTLLAGLGREGKVKEVMHLLEEMYHSN 700

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
             P+++ Y++++D  C  G ++DA  +  S+ ++GCIPD SSYNT+I    K E+  EA 
Sbjct: 701 YPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAF 760

Query: 370 SLYGEM-----------------------------------ISMGVRPDNSC-------I 387
           S++ +M                                   +  G + D S        I
Sbjct: 761 SIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGI 820

Query: 388 LEAA------ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
           L+ A      E    + ++   LD      L+  LCK  +   A EL KK   +G     
Sbjct: 821 LKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKT 880

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEE 501
             Y  +ICGL  E  I+ A  L  +M+E    C                PDE T ++L +
Sbjct: 881 GLYNSLICGLVDENLIDIAEGLFAEMKE--LGC---------------GPDEFTYNLLLD 923

Query: 502 LLNKDENCHECMNLLPSFLSRNQEESKLT 530
            + K     E + +      +  E + +T
Sbjct: 924 AMGKSMRIEEMLKVQEEMHRKGYESTYVT 952



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 95/214 (44%), Gaps = 15/214 (7%)

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
           E G++   +  +Y  ++  L K     +A E++  M   G++P V  YS L+  +     
Sbjct: 278 EAGIVL--NAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRD 335

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP------- 382
           ++    L   +E+ G  P+  SY   I    + ++ +EA  +  +M + G +P       
Sbjct: 336 VETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTV 395

Query: 383 ------DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
                 D   I +A ++F  +  +  + D   +  L+D    +   +S  E++  +   G
Sbjct: 396 LIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADG 455

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
              NVV YT +I  LC  G + +A ++  +M++K
Sbjct: 456 YNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQK 489



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 56/125 (44%)

Query: 67   ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            +LND L +F  ++ M   P + ++N L+  L   K     + L   +   G++P+  + N
Sbjct: 1070 QLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYN 1129

Query: 127  ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
             L+    K    ++A      +L K + P+V T   LIRG  + G    A   + + +  
Sbjct: 1130 SLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVG 1189

Query: 187  DCRPN 191
             C PN
Sbjct: 1190 GCLPN 1194



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 93/234 (39%), Gaps = 30/234 (12%)

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           V    E+F  M+ + +  +V  ++++  G  + G +  A      ++  G + +  +YN 
Sbjct: 231 VGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNG 290

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPD--NSCILEAA-----------ELFRTLHNTK 401
           L+    K     EAL +Y  M+  GV P      +L  A            L R +    
Sbjct: 291 LVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHG 350

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
            + ++  +   +  L ++ R   A+ +  K+   G +P+V+T+TV+I  LC  G I  A 
Sbjct: 351 VKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAK 410

Query: 462 DLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
           D                 +  KM K   KPD +T   L +    + +    M +
Sbjct: 411 D-----------------VFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEI 447


>gi|297832060|ref|XP_002883912.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329752|gb|EFH60171.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 179/396 (45%), Gaps = 50/396 (12%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  P   + N +++   ++  + +A+V    + R     +V T   +I  LC +GK  +A
Sbjct: 186 GFDPKTETCNHILSLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMINVLCKEGKLKKA 245

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
            G      +F  +    P ++ Y +++ G    G +   R++  +MK +G  PD   YN 
Sbjct: 246 KGFLGIMESFGIK----PTIVTYNTLVQGYSLRGRIEGARMIISEMKSKGFQPDLQTYNP 301

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           ++   C          N   A E+  E        G+   PD +SY  +I     +  ++
Sbjct: 302 ILSWMC----------NEGRASEVLREMK------GIGLVPDSVSYNILIRGCSNNGDLE 345

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A     +M  +G++P    Y++LI G  +  +I+ A  L   I  +G + D+ +YN +I
Sbjct: 346 TAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNIVI 405

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFE 403
           N Y +    ++A +L+ EM++ G++P               +   EA ELF  +     +
Sbjct: 406 NGYCQHGDAKKAFALHDEMMTDGIKPTQFTYTSLIYVLCRRNKTREADELFEKVVGKGMK 465

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            DL + N L+DG C +  +  A+ L K++ R   +P+ VTY  ++ GLC EG  E+A   
Sbjct: 466 PDLVMMNTLMDGHCATGNMDRAFSLLKEMDRMNIDPDDVTYNCLMRGLCGEGKFEEAR-- 523

Query: 464 LPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                          EL+ +M +R +KPD I+ + L
Sbjct: 524 ---------------ELMGEMKRRGIKPDHISYNTL 544



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 170/406 (41%), Gaps = 42/406 (10%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E +L  A  F   M      P + ++N+L+   + +        +   + + G  PD  +
Sbjct: 239 EGKLKKAKGFLGIMESFGIKPTIVTYNTLVQGYSLRGRIEGARMIISEMKSKGFQPDLQT 298

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N +++  C     S+    +  I      PD V+   LIRG    G    A     + V
Sbjct: 299 YNPILSWMCNEGRASEVLREMKGI---GLVPDSVSYNILIRGCSNNGDLETAFAYRDEMV 355

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
               +  ++P    Y ++I GL  +  +    +L  +++ +GI  D+  YN +I  YC  
Sbjct: 356 ----KQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNIVINGYC-- 409

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                  G+   A  LH+E +           P   +Y S+I  LC+     +A ELF  
Sbjct: 410 -----QHGDAKKAFALHDEMMTDG------IKPTQFTYTSLIYVLCRRNKTREADELFEK 458

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           +  +G+ PD+V+ ++L+DG+C  G +D A  L   ++     PD  +YN L+       K
Sbjct: 459 VVGKGMKPDLVMMNTLMDGHCATGNMDRAFSLLKEMDRMNIDPDDVTYNCLMRGLCGEGK 518

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
            EEA  L GEM   G++PD+                        +N L+ G  K    + 
Sbjct: 519 FEEARELMGEMKRRGIKPDH----------------------ISYNTLISGYSKKGDTKH 556

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           A+ +  ++   G  P ++TY  ++ GL      E A +LL +M+ +
Sbjct: 557 AFIVRDEMLSLGFNPTLLTYNALLKGLSKNQDGELAEELLREMKSE 602



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 130/301 (43%), Gaps = 38/301 (12%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +  IGL+PD VS NIL+        +  AF     ++++   P   T   LI GL M+ K
Sbjct: 319 MKGIGLVPDSVSYNILIRGCSNNGDLETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENK 378

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
             EA+ +  + +       ++ + + Y  +I+G C+ G   K   L  +M   GI P  F
Sbjct: 379 I-EAAEILIREIR---EKGIVLDSVTYNIVINGYCQHGDAKKAFALHDEMMTDGIKPTQF 434

Query: 233 VYNSLIRVYC----------------------------CAVNWEDAKGNTSAALELHEEF 264
            Y SLI V C                              ++   A GN   A  L +E 
Sbjct: 435 TYTSLIYVLCRRNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCATGNMDRAFSLLKEM 494

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
              N        PD ++Y  ++  LC +   ++A+EL  +MK RGI PD + Y++LI GY
Sbjct: 495 DRMN------IDPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGY 548

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
              G    A  +   + S G  P   +YN L+   SK +  E A  L  EM S G+ P++
Sbjct: 549 SKKGDTKHAFIVRDEMLSLGFNPTLLTYNALLKGLSKNQDGELAEELLREMKSEGIVPND 608

Query: 385 S 385
           S
Sbjct: 609 S 609



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 132/295 (44%), Gaps = 17/295 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L  A  + + M+     P   ++N+L+  L  +        L   +   G++ D V+ N
Sbjct: 343 DLETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYN 402

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           I++N +C+      AF     ++     P   T   LI  LC + K  EA  LF K V  
Sbjct: 403 IVINGYCQHGDAKKAFALHDEMMTDGIKPTQFTYTSLIYVLCRRNKTREADELFEKVVG- 461

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                + P+++   +++DG C  G +++   L  +M    I PD   YN L+R  C    
Sbjct: 462 ---KGMKPDLVMMNTLMDGHCATGNMDRAFSLLKEMDRMNIDPDDVTYNCLMRGLCGEGK 518

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
           +E+A+           E +      G+   PD +SY ++I+   K      A  +  +M 
Sbjct: 519 FEEAR-----------ELMGEMKRRGI--KPDHISYNTLISGYSKKGDTKHAFIVRDEML 565

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           S G  P ++ Y++L+ G       + A +L   ++SEG +P+ SS+ ++I + SK
Sbjct: 566 SLGFNPTLLTYNALLKGLSKNQDGELAEELLREMKSEGIVPNDSSFCSVIEAMSK 620



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 75/157 (47%), Gaps = 22/157 (14%)

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
            +++  ++  YC +  +D+A + F  ++ +G  P T + N +++  S++ ++E A   Y 
Sbjct: 156 TILFDFMVRFYCQLRMVDEAIECFYLMKEKGFDPKTETCNHILSLLSRLNRIENAWVFYA 215

Query: 374 EMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
           +M  M ++                       ++  FN +++ LCK  +L+ A      + 
Sbjct: 216 DMYRMEIKS----------------------NVYTFNIMINVLCKEGKLKKAKGFLGIME 253

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            +G +P +VTY  ++ G  + G IE A  ++ +M+ K
Sbjct: 254 SFGIKPTIVTYNTLVQGYSLRGRIEGARMIISEMKSK 290



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 89/191 (46%), Gaps = 16/191 (8%)

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
           C+  +VD+A E F  MK +G  P     + ++     + RI++A   +  +       + 
Sbjct: 167 CQLRMVDEAIECFYLMKEKGFDPKTETCNHILSLLSRLNRIENAWVFYADMYRMEIKSNV 226

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCI--------LEAAELFRTL 397
            ++N +IN   K  K+++A    G M S G++P     N+ +        +E A +  + 
Sbjct: 227 YTFNIMINVLCKEGKLKKAKGFLGIMESFGIKPTIVTYNTLVQGYSLRGRIEGARMIISE 286

Query: 398 HNTK-FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
             +K F+ DL  +N ++  +C   R   A E+ +++   G  P+ V+Y ++I G    G 
Sbjct: 287 MKSKGFQPDLQTYNPILSWMCNEGR---ASEVLREMKGIGLVPDSVSYNILIRGCSNNGD 343

Query: 457 IEKAYDLLPDM 467
           +E A+    +M
Sbjct: 344 LETAFAYRDEM 354


>gi|242049502|ref|XP_002462495.1| hypothetical protein SORBIDRAFT_02g026770 [Sorghum bicolor]
 gi|241925872|gb|EER99016.1| hypothetical protein SORBIDRAFT_02g026770 [Sorghum bicolor]
          Length = 294

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 147/290 (50%), Gaps = 34/290 (11%)

Query: 152 VFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF 211
           V SP+VV    +I G   +G   +A  LF + V    +  + PN++ Y S++  LCK   
Sbjct: 7   VCSPNVVAYSTVIDGFFKEGNVNKACDLFNEMV----QRGISPNLVTYNSVVHALCKARA 62

Query: 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGEL 271
           V++   +   M G+G+ PD   YN+LI V      W++A                     
Sbjct: 63  VDRAEAILRPMVGKGVRPDRMTYNNLIYVDSSMGQWKEA--------------------- 101

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
                   +  CSIIN+LCK   V +A+++F    S G+ P+V+VY++L+DGYCL+ ++ 
Sbjct: 102 --------VRSCSIINNLCKVGRVVEAQDIFDLTVSIGVHPNVMVYNTLMDGYCLVHKMK 153

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN-SCILEA 390
            A K+F ++ S G  P+  +Y+TL+N Y KI ++ E LSL+ EM+  G+ P   S + EA
Sbjct: 154 KALKVFDAMVSVGIEPNVVTYSTLVNGYCKIGRINEGLSLFTEMLHKGIEPSAISRVKEA 213

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
             LF ++  +     +  +N ++  L K   +  A  +F  +   G +PN
Sbjct: 214 KGLFASISGSGLVPSVVTYNVMMTNLIKEGLVEEADRMFSFMENSGCDPN 263



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 110/205 (53%), Gaps = 9/205 (4%)

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
            E G +C P+V++Y ++I+   K+  V+KA +LF +M  RGI P++V Y+S++   C   
Sbjct: 2   AETGAVCSPNVVAYSTVIDGFFKEGNVNKACDLFNEMVQRGISPNLVTYNSVVHALCKAR 61

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL---SLYGEMISMGVRPDNS 385
            +D A  +   +  +G  PD  +YN LI   S + + +EA+   S+   +  +G      
Sbjct: 62  AVDRAEAILRPMVGKGVRPDRMTYNNLIYVDSSMGQWKEAVRSCSIINNLCKVGR----- 116

Query: 386 CILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
            ++EA ++F    +     ++ V+N L+DG C   +++ A ++F  +   G EPNVVTY+
Sbjct: 117 -VVEAQDIFDLTVSIGVHPNVMVYNTLMDGYCLVHKMKKALKVFDAMVSVGIEPNVVTYS 175

Query: 446 VMICGLCIEGGIEKAYDLLPDMEEK 470
            ++ G C  G I +   L  +M  K
Sbjct: 176 TLVNGYCKIGRINEGLSLFTEMLHK 200



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 120/268 (44%), Gaps = 45/268 (16%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ P+ V+ N +++  CK   V  A   L  ++ K   PD +T   LI      G++ EA
Sbjct: 42  GISPNLVTYNSVVHALCKARAVDRAEAILRPMVGKGVRPDRMTYNNLIYVDSSMGQWKEA 101

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
                               +   SII+ LCK G V + + +F      G++P+  VYN+
Sbjct: 102 --------------------VRSCSIINNLCKVGRVVEAQDIFDLTVSIGVHPNVMVYNT 141

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           L+  YC     +        AL++ +  V+      V   P+V++Y +++N  CK   ++
Sbjct: 142 LMDGYCLVHKMKK-------ALKVFDAMVS------VGIEPNVVTYSTLVNGYCKIGRIN 188

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +   LF +M  +GI P  +             R+ +A+ LF SI   G +P   +YN ++
Sbjct: 189 EGLSLFTEMLHKGIEPSAI------------SRVKEAKGLFASISGSGLVPSVVTYNVMM 236

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDN 384
            +  K   VEEA  ++  M + G  P++
Sbjct: 237 TNLIKEGLVEEADRMFSFMENSGCDPNS 264



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 104/228 (45%), Gaps = 36/228 (15%)

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           P+VV YS++IDG+   G ++ A  LF  +   G  P+  +YN+++++  K   V+ A ++
Sbjct: 10  PNVVAYSTVIDGFFKEGNVNKACDLFNEMVQRGISPNLVTYNSVVHALCKARAVDRAEAI 69

Query: 372 YGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLT-------VFNC-LVDGLCKSWRLR 423
              M+  GVRPD           R  +N    +D +       V +C +++ LCK  R+ 
Sbjct: 70  LRPMVGKGVRPD-----------RMTYNNLIYVDSSMGQWKEAVRSCSIINNLCKVGRVV 118

Query: 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHK 483
            A ++F      G  PNV+ Y  ++ G C+                 + +  KA+++   
Sbjct: 119 EAQDIFDLTVSIGVHPNVMVYNTLMDGYCL-----------------VHKMKKALKVFDA 161

Query: 484 MAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLTR 531
           M    ++P+ +T S L     K    +E ++L    L +  E S ++R
Sbjct: 162 MVSVGIEPNVVTYSTLVNGYCKIGRINEGLSLFTEMLHKGIEPSAISR 209



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 125/298 (41%), Gaps = 45/298 (15%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  +N A   FN M+    +P + ++NS++ AL   +       +   +   G+ PD ++
Sbjct: 25  EGNVNKACDLFNEMVQRGISPNLVTYNSVVHALCKARAVDRAEAILRPMVGKGVRPDRMT 84

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N L+     M          G+    V S  +      I  LC  G+  EA  +F   V
Sbjct: 85  YNNLIYVDSSM----------GQWKEAVRSCSI------INNLCKVGRVVEAQDIFDLTV 128

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
           +      V PNV+ Y +++DG C    + K   +F  M   GI P+   Y++L+  YC  
Sbjct: 129 SI----GVHPNVMVYNTLMDGYCLVHKMKKALKVFDAMVSVGIEPNVVTYSTLVNGYC-- 182

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                  G  +  L L  E ++   E      P  +S             V +AK LF  
Sbjct: 183 -----KIGRINEGLSLFTEMLHKGIE------PSAISR------------VKEAKGLFAS 219

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
           +   G++P VV Y+ ++      G +++A ++F  +E+ GC P++   N ++    KI
Sbjct: 220 ISGSGLVPSVVTYNVMMTNLIKEGLVEEADRMFSFMENSGCDPNSRLLNHVVKDLMKI 277


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 113/449 (25%), Positives = 190/449 (42%), Gaps = 47/449 (10%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P +  +N+L+ +L           L   ++ + L P+ ++ +IL++ FC+   +  A   
Sbjct: 363 PNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISY 422

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
             R+++      V     LI G C  G  + A  LF +         V P    + S+I 
Sbjct: 423 FDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMT----NKGVEPTATTFTSLIS 478

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           G CKD  V K   L+  M   GI P+ + + +LI   C       +    + A EL +E 
Sbjct: 479 GYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLC-------STNKMAEASELFDEL 531

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           V           P  ++Y  +I   C+D  +DKA EL  DM  +G++PD   Y  LI G 
Sbjct: 532 VERK------IKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGL 585

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
           C  GR+  A+     +  +    +   Y+ L++ Y +  ++ EALS   EMI  G+  D 
Sbjct: 586 CSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDL 645

Query: 385 SC---ILEAA----------ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
            C   +++ A          +L + +H+     D  ++  ++D   K    + A+E +  
Sbjct: 646 VCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDL 705

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKP 491
           +      PNVVTYT ++ GLC  G +++A                   L  +M    V P
Sbjct: 706 MVTEECFPNVVTYTALMNGLCKAGEMDRAG-----------------LLFKRMQAANVPP 748

Query: 492 DEITVSILEELLNKDENCHECMNLLPSFL 520
           + IT     + L K+ N  E + L  + L
Sbjct: 749 NSITYGCFLDNLTKEGNMKEAIGLHHAML 777



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 106/392 (27%), Positives = 173/392 (44%), Gaps = 47/392 (11%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           LLP+  +L+ L+N   K+      +      +     PD  T   ++R +C    F  A 
Sbjct: 186 LLPEVRTLSALLNGLLKVRKFITVWELFDESVNAGVRPDPYTCSAVVRSMCELKDFLRAK 245

Query: 178 GLFTKFVA--FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
                  A  FD       +++ Y  +I GLCK   V++   +   + G+G+  D   Y 
Sbjct: 246 EKIRWMEANGFDL------SIVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYC 299

Query: 236 SLIRVYCCAVNWEDAKGNTSAALEL------------------------HEEFVNGNGEL 271
           +L+  +C    +E         +EL                          E V   G  
Sbjct: 300 TLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRF 359

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
           G +  P++  Y ++INSLCK   +DKA+ L+ +M    + P+ + YS LID +C  GR+D
Sbjct: 360 GFV--PNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLD 417

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC----- 386
            A   F  +  +G      +YN+LIN   K   +  A SL+ EM + GV P  +      
Sbjct: 418 VAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLI 477

Query: 387 --------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
                   + +A +L+  + +     ++  F  L+ GLC + ++  A ELF +L     +
Sbjct: 478 SGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIK 537

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           P  VTY V+I G C +G I+KA++LL DM +K
Sbjct: 538 PTEVTYNVLIEGYCRDGKIDKAFELLEDMHQK 569



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 104/438 (23%), Positives = 193/438 (44%), Gaps = 75/438 (17%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           ++++  A   +N MI    TP + +F +L+  L           L + L    + P  V+
Sbjct: 483 DLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVT 542

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N+L+  +C+   +  AF  L  + +K   PD  T   LI GLC  G+ ++A      F+
Sbjct: 543 YNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAK----DFI 598

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKV----------------------------- 215
               + NV  N +CY++++ G C++G + +                              
Sbjct: 599 DDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQ 658

Query: 216 --RVLFL----DMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
             R  F     DM  +G+ PD  +Y S+I  Y         +G+   A E  +  V    
Sbjct: 659 PDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTY-------SKEGSFKKAFECWDLMVTEE- 710

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
                C P+V++Y +++N LCK   +D+A  LF  M++  + P+ + Y   +D     G 
Sbjct: 711 -----CFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGN 765

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE 389
           + +A  L  ++  +G + +T ++N +I  + K+ +  EA  +  EM   G+ PD  C+  
Sbjct: 766 MKEAIGLHHAM-LKGLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPD--CV-- 820

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
                              ++ L+   C+S  + ++ +L+  +   G EP++V Y ++I 
Sbjct: 821 ------------------TYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPDLVAYNLLIY 862

Query: 450 GLCIEGGIEKAYDLLPDM 467
           G C+ G ++KA++L  DM
Sbjct: 863 GCCVNGELDKAFELRDDM 880



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 114/445 (25%), Positives = 184/445 (41%), Gaps = 47/445 (10%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           +R+   G+     + N L+N  CK   +S A      +  K   P   T   LI G C  
Sbjct: 424 DRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKD 483

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
            +  +A  L+ K +       + PNV  + ++I GLC    + +   LF ++  R I P 
Sbjct: 484 LQVQKAFKLYNKMI----DNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPT 539

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
              YN LI  YC         G    A EL E+      + G++  PD  +Y  +I+ LC
Sbjct: 540 EVTYNVLIEGYC-------RDGKIDKAFELLEDM----HQKGLV--PDTYTYRPLISGLC 586

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
               V KAK+   D+  + +  + + YS+L+ GYC  GR+ +A      +   G   D  
Sbjct: 587 STGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLV 646

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK--FE-LDLT 407
            +  LI+   K    +    L  +M   G+RPDN       + +    + K  FE  DL 
Sbjct: 647 CHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLM 706

Query: 408 V----------FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
           V          +  L++GLCK+  +  A  LFK++      PN +TY   +  L  EG +
Sbjct: 707 VTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNM 766

Query: 458 EKAYDLLPDMEE-----------------KIRECLKAIELLHKMAKRYVKPDEITVSILE 500
           ++A  L   M +                 K+    +A ++L +M +  + PD +T S L 
Sbjct: 767 KEAIGLHHAMLKGLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLI 826

Query: 501 ELLNKDENCHECMNLLPSFLSRNQE 525
               +  N    + L  + L+R  E
Sbjct: 827 YEYCRSGNVGASVKLWDTMLNRGLE 851



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 128/282 (45%), Gaps = 18/282 (6%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+  D V   +L++   K       F  L  +  +   PD V    +I     +G F +A
Sbjct: 640 GINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKA 699

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
              +   V  +C     PNV+ Y ++++GLCK G +++  +LF  M+   + P++  Y  
Sbjct: 700 FECWDLMVTEEC----FPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYG- 754

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
                 C ++    +GN   A+ LH   + G          + +++  II   CK     
Sbjct: 755 ------CFLDNLTKEGNMKEAIGLHHAMLKG-------LLANTVTHNIIIRGFCKLGRFH 801

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A ++  +M   GI PD V YS+LI  YC  G +  + KL+ ++ + G  PD  +YN LI
Sbjct: 802 EATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPDLVAYNLLI 861

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398
                  ++++A  L  +M+  G+ PDN  + +   +F   H
Sbjct: 862 YGCCVNGELDKAFELRDDMLRRGIIPDNKYLQKKGTIFEATH 903



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 94/217 (43%), Gaps = 30/217 (13%)

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           FLD   R      + ++ L+  Y L  RI DA  +   + +   +P+  + + L+N   K
Sbjct: 143 FLDSYKRCKFSSTLGFNLLVQNYVLSSRIFDAVVIVKLMFANNLLPEVRTLSALLNGLLK 202

Query: 362 IEKVEEALSLYGEMISMGVRPD-NSC------------ILEAAELFRTLHNTKFELDLTV 408
           + K      L+ E ++ GVRPD  +C             L A E  R +    F+L +  
Sbjct: 203 VRKFITVWELFDESVNAGVRPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLSIVT 262

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +N L+ GLCK  R+  A E+ + L   G   +VVTY  ++ G C                
Sbjct: 263 YNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFC---------------- 306

Query: 469 EKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505
            ++++    I+L+ +M +    P E  VS L + L K
Sbjct: 307 -RLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRK 342


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 115/450 (25%), Positives = 195/450 (43%), Gaps = 57/450 (12%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E +L ++   F  M  M  +P + ++NSL+              L   +  +G +PD ++
Sbjct: 243 EGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIIT 302

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA-------- 176
            N L+NC+CK   +  AF     +      P+VVT   LI   C +G    A        
Sbjct: 303 YNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMR 362

Query: 177 -SGL------FTKFVAFDCRPN----------------VIPNVICYASIIDGLCKDGFVN 213
            +GL      +T  +  +C+                  V  N++ Y +++DGLCK G + 
Sbjct: 363 RTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMI 422

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
           +   +F  M   GI P+  VY +L+  Y  A   EDA       +++ ++    N     
Sbjct: 423 EAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDA-------MKILKQMTECN----- 470

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
              PD++ Y SII   C    +++ K +  +MKSRGI  + V+ +++ID Y   G+  DA
Sbjct: 471 -IKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDA 529

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---------- 383
              F  ++  G      +Y  LI+   +   VE A+  +  M+S+G++P+          
Sbjct: 530 LNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDG 589

Query: 384 ---NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
              N+CI  A +LF  +       D+T F  L+DG  K   L+ A  L  ++     E +
Sbjct: 590 LCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFD 649

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           +  YT ++ G    G + +A     +M EK
Sbjct: 650 LHVYTSLVSGFSQCGELHQARKFFNEMIEK 679



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 115/452 (25%), Positives = 186/452 (41%), Gaps = 117/452 (25%)

Query: 108 CLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVF--------SPDVVT 159
           C S R+     LP   S N L++   K           G+++RK F        +P V T
Sbjct: 182 CFS-RMRNFRTLPKARSCNFLLHRLSK--------SGNGQLVRKFFNDMIGAGIAPSVFT 232

Query: 160 LGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLF 219
              +I  LC +G    +  LF +         + P+V+ Y S+IDG  K G + +V  LF
Sbjct: 233 YNVMIDYLCKEGDLENSRRLFVQMREM----GLSPDVVTYNSLIDGYGKVGSLEEVASLF 288

Query: 220 LDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDV 279
            +MK  G  PD   YN LI  YC    +E        A E   E  N NG       P+V
Sbjct: 289 NEMKDVGCVPDIITYNGLINCYC---KFE----KMPRAFEYFSEMKN-NG-----LKPNV 335

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP--------------------------- 312
           ++Y ++I++ CK+ ++  A +L  DM+  G++P                           
Sbjct: 336 VTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLND 395

Query: 313 --------DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
                   ++V Y++L+DG C  GR+ +A ++F S+  +G  P+   Y  L++ Y K E+
Sbjct: 396 MLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAER 455

Query: 365 VEEALSLYGEMISMGVRPD-------------------NSCILE---------------- 389
           +E+A+ +  +M    ++PD                      ILE                
Sbjct: 456 MEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTT 515

Query: 390 -------------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
                        A   F+ + +   E  +  +  L+DGLC++  +  A + F ++   G
Sbjct: 516 IIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLG 575

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
            +PNV  YT +I GLC    IE A  L  +M+
Sbjct: 576 LQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQ 607



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 108/430 (25%), Positives = 188/430 (43%), Gaps = 66/430 (15%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           A  +F+ M +    P + ++++L+ A   +      I L   +   GLLP+  +   L++
Sbjct: 319 AFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLID 378

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
             CK   +++A+  L  +L+     ++VT   L+ GLC  G+  EA  +F   +     P
Sbjct: 379 ANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISP 438

Query: 191 N-------------------------------VIPNVICYASIIDGLCKDGFVNKVRVLF 219
           N                               + P++I Y SII G C    + + +++ 
Sbjct: 439 NQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLIL 498

Query: 220 LDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDV 279
            +MK RGI  +  +  ++I  Y  A       G +S AL   +E      ++GV     +
Sbjct: 499 EEMKSRGISANPVISTTIIDAYFKA-------GKSSDALNFFQEM----QDVGV--EATI 545

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           ++YC +I+ LC+  +V+ A + F  M S G+ P+V VY+SLIDG C    I+ A+KLF  
Sbjct: 546 VTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDE 605

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN 399
           ++  G  PD +++  LI+   K   ++EAL L   M  + +                   
Sbjct: 606 MQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAI------------------- 646

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
              E DL V+  LV G  +   L  A + F ++   G  P  V    ++      G +++
Sbjct: 647 ---EFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDE 703

Query: 460 AYDLLPDMEE 469
           A +L  +ME 
Sbjct: 704 AIELKNEMER 713



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 134/281 (47%), Gaps = 39/281 (13%)

Query: 260 LHEEFVNGNGEL---------GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
           LH    +GNG+L         G    P V +Y  +I+ LCK+  ++ ++ LF+ M+  G+
Sbjct: 202 LHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGL 261

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
            PDVV Y+SLIDGY  +G +++   LF  ++  GC+PD  +YN LIN Y K EK+  A  
Sbjct: 262 SPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFE 321

Query: 371 LYGEMISMGVRP---------DNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
            + EM + G++P         D  C    +  A +L   +  T    +   +  L+D  C
Sbjct: 322 YFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANC 381

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKA 477
           K+  L  AW+L   + + G + N+VTYT ++ GLC  G +                 ++A
Sbjct: 382 KAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRM-----------------IEA 424

Query: 478 IELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPS 518
            E+   M K  + P++   + L     K E   + M +L  
Sbjct: 425 EEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQ 465



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 13/189 (6%)

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353
           L+++A E F  M++   +P     + L+      G     RK F  +   G  P   +YN
Sbjct: 175 LLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYN 234

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCI---------LEAAELFRTLHNT 400
            +I+   K   +E +  L+ +M  MG+ PD    NS I          E A LF  + + 
Sbjct: 235 VMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDV 294

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
               D+  +N L++  CK  ++  A+E F ++   G +PNVVTY+ +I   C EG ++ A
Sbjct: 295 GCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGA 354

Query: 461 YDLLPDMEE 469
             LL DM  
Sbjct: 355 IKLLXDMRR 363


>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
          Length = 1096

 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 112/456 (24%), Positives = 207/456 (45%), Gaps = 51/456 (11%)

Query: 78  MIHMQPTPFMPS---FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           M  M+ + + P+   +N++L     K  +   I L + + + G+  D  + N+L++  C+
Sbjct: 216 MQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCR 275

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
              ++  ++ L  + +++  P+ VT   LI G   +GK   AS L  + ++F     + P
Sbjct: 276 SNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSF----GLSP 331

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           N + + ++IDG   +G   +   +F  M+ +G+ P    Y  L+   C    ++ A+G  
Sbjct: 332 NHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFY 391

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
                     +  NG    +C   + +Y  +I+ LCK+  +D+A  L  +M   GI PD+
Sbjct: 392 MR--------MKRNG----VCVGRI-TYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDI 438

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           V YS+LI+G+C +GR   A+++   I   G  P+   Y+TLI +  ++  ++EA+ +Y  
Sbjct: 439 VTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEA 498

Query: 375 MISMGVRPDN-------------SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
           MI  G   D+               + EA E  R + +     +   F+CL++G   S  
Sbjct: 499 MILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGE 558

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------ 469
              A+ +F ++ + G  P   TY  ++ GLC  G + +A   L  +              
Sbjct: 559 GLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNT 618

Query: 470 ------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                 K     KA+ L  +M +R + PD  T + L
Sbjct: 619 LLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSL 654



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 158/364 (43%), Gaps = 30/364 (8%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  P   + N ++    K       +  L  +L++   PDV T   LI  LC +G F ++
Sbjct: 153 GFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKS 212

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
           S L  K      +    P ++ Y +++   CK G       L   MK +G+  D   YN 
Sbjct: 213 SYLMQKME----KSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNM 268

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI   C +     AKG      ++ +  +          HP+ ++Y ++IN    +  V 
Sbjct: 269 LIHDLCRSNRI--AKGYL-LLRDMRKRMI----------HPNEVTYNTLINGFSNEGKVL 315

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A +L  +M S G+ P+ V +++LIDG+   G   +A K+F  +E++G  P   SY  L+
Sbjct: 316 IASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLL 375

Query: 357 NSYSKIEKVEEALSLYGEMISMGV-------------RPDNSCILEAAELFRTLHNTKFE 403
           +   K  + + A   Y  M   GV                N  + EA  L   +     +
Sbjct: 376 DGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGID 435

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D+  ++ L++G CK  R ++A E+  ++ R G  PN + Y+ +I   C  G +++A  +
Sbjct: 436 PDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRI 495

Query: 464 LPDM 467
              M
Sbjct: 496 YEAM 499



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 105/401 (26%), Positives = 169/401 (42%), Gaps = 40/401 (9%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L +A+  +  MI    T    +FN L+ +L               + + G+LP+ VS + 
Sbjct: 489 LKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDC 548

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N +        AF     + +    P   T G L++GLC  G   EA        A  
Sbjct: 549 LINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAV- 607

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
             P  +  V+ Y +++  +CK G + K   LF +M  R I PD++ Y SLI   C     
Sbjct: 608 --PAAVDTVM-YNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLC----- 659

Query: 248 EDAKGNTSAALELHEEF-VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
              KG T  A+   +E    GN        P+ + Y   ++ + K             M 
Sbjct: 660 --RKGKTVIAILFAKEAEARGN------VLPNKVMYTCFVDGMFKAGQWKAGIYFREQMD 711

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           + G  PD+V  +++IDGY  MG+I+    L   + ++   P+ ++YN L++ YSK + V 
Sbjct: 712 NLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVS 771

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
            +  LY  +I  G+ PD            T H+            LV G+C+S  L    
Sbjct: 772 TSFLLYRSIILNGILPDK----------LTCHS------------LVLGICESNMLEIGL 809

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           ++ K     G E +  T+ ++I   C  G I  A+DL+  M
Sbjct: 810 KILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVM 850



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 106/475 (22%), Positives = 179/475 (37%), Gaps = 87/475 (18%)

Query: 71   ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
            A   F+ M  +   P   ++ SLL  L    +        + L+ +    D V  N L+ 
Sbjct: 562  AFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLT 621

Query: 131  CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
              CK   ++ A    G ++++   PD  T   LI GLC +GK T  + LF K    + R 
Sbjct: 622  AMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGK-TVIAILFAK--EAEARG 678

Query: 191  NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
            NV+PN + Y   +DG+ K G           M   G  PD    N++I  Y         
Sbjct: 679  NVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGY-------SR 731

Query: 251  KGNTSAALELHEEFVNGNG-----ELGVICH------------------------PDVLS 281
             G      +L  E  N NG        ++ H                        PD L+
Sbjct: 732  MGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLT 791

Query: 282  YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG------------- 328
              S++  +C+  +++   ++      RG+  D   ++ LI   C  G             
Sbjct: 792  CHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMT 851

Query: 329  ----------------------RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
                                  R  ++R +   +  +G  P++  Y  LIN   ++  ++
Sbjct: 852  SLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIK 911

Query: 367  EALSLYGEMISMGVRPDN---SCIL----------EAAELFRTLHNTKFELDLTVFNCLV 413
             A  +  EMI+  + P N   S ++          EA  L R +   K    +  F  L+
Sbjct: 912  TAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLM 971

Query: 414  DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
               CK+  +  A EL   +   G + ++V+Y V+I GLC +G +  A++L  +M+
Sbjct: 972  HLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMK 1026



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 81/361 (22%), Positives = 158/361 (43%), Gaps = 36/361 (9%)

Query: 107  ICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166
            I   E+++ +G  PD V+ N +++ + +M  +      L  +  +   P++ T   L+ G
Sbjct: 704  IYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHG 763

Query: 167  LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
               +   + +  L+   +       ++P+ +   S++ G+C+   +     +      RG
Sbjct: 764  YSKRKDVSTSFLLYRSIIL----NGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRG 819

Query: 227  IYPDAFVYNSLIRVYCCA---VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
            +  D + +N LI   CCA   +NW         A +L    V     LG+    D     
Sbjct: 820  VEVDRYTFNMLIS-KCCANGEINW---------AFDL----VKVMTSLGISLDKDTCD-- 863

Query: 284  SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
            ++++ L ++    +++ +  +M  +GI P+   Y  LI+G C +G I  A  +   + + 
Sbjct: 864  AMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAH 923

Query: 344  GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP-------------DNSCILEA 390
               P   + + ++ + +K  K +EA  L   M+ M + P              N  ++EA
Sbjct: 924  KICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEA 983

Query: 391  AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
             EL   + N   +LDL  +N L+ GLC    +  A+EL++++   G   N  TY  +I G
Sbjct: 984  LELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRG 1043

Query: 451  L 451
            L
Sbjct: 1044 L 1044



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 119/295 (40%), Gaps = 59/295 (20%)

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
           VY+ LIRVY         +G    +LE+        G  G   +P V +  +I+ S+ K 
Sbjct: 125 VYDILIRVYL-------REGMIQDSLEIFRLM----GLYGF--NPSVYTCNAILGSVVKS 171

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
                      +M  R I PDV  ++ LI+  C  G  + +  L   +E  G  P   +Y
Sbjct: 172 GEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTY 231

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCL 412
           NT+++ Y K  + + A+ L   M S GV                      + D+  +N L
Sbjct: 232 NTVLHWYCKKGRFKAAIELLDHMKSKGV----------------------DADVCTYNML 269

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM----- 467
           +  LC+S R+   + L + + +    PN VTY  +I G   EG +  A  LL +M     
Sbjct: 270 IHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGL 329

Query: 468 ----------------EEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
                           E   +E LK   + + M  + + P E++  +L + L K+
Sbjct: 330 SPNHVTFNALIDGHISEGNFKEALK---MFYMMEAKGLTPSEVSYGVLLDGLCKN 381


>gi|125537408|gb|EAY83896.1| hypothetical protein OsI_39118 [Oryza sativa Indica Group]
          Length = 693

 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 111/415 (26%), Positives = 175/415 (42%), Gaps = 31/415 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++  A  FF +          P F  L+ + +      + + +   +   G  PD    N
Sbjct: 109 DVRRAFEFFRWADRQWRYRHAPEFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICN 168

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           + +N       V  A     R+ R    PDV T  CLI+GLC   +  +A  +    +  
Sbjct: 169 MAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQN 228

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG-RGIYPDAFVYNSLIRVYCCAV 245
            C     P+ I Y +++  LCK+  V +VR L   M+   G++PD   YN LI       
Sbjct: 229 GC----PPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLA--- 281

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
                 G+   ALE   E        G     D + Y +I++S C +  + +AKE+  +M
Sbjct: 282 ----KHGHADEALEFLRE------SEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEM 331

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
            S+G  PDVV YS+++DG+C +G +D ARK+   +    C P+T ++  L+N   K+ K 
Sbjct: 332 ISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKT 391

Query: 366 EEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTV-------------FNCL 412
            EA  L  +       P +         FR     K   D+ V              N L
Sbjct: 392 SEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLL 451

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +  LCK  +   A +  ++    G   NVV +T +I G   +G +E A  L+ DM
Sbjct: 452 IHALCKDGKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDDM 506



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 90/397 (22%), Positives = 165/397 (41%), Gaps = 48/397 (12%)

Query: 64  GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERL-NTIGLLPDF 122
           G   + DA+     M+     P   S+ +++  L  +K       L +R+ N  GL PD 
Sbjct: 211 GARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQ 270

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           V+ N+L++   K     +A   L     K F  D V    ++   C+ G+  EA  +  +
Sbjct: 271 VTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGE 330

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
            ++  C+P+V+     Y++++DG C+ G +++ R +   M      P+   + +L+   C
Sbjct: 331 MISKGCQPDVVT----YSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLC 386

Query: 243 CAVNWEDAKGNTSAALEL----HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
                    G TS A EL     EE+            P  ++Y  +++   ++  + ++
Sbjct: 387 KV-------GKTSEAWELLNKSEEEWWT----------PSDITYSVVMHGFRREGKLKES 429

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
            ++ + M  +G  P  V  + LI   C  G+  +A+      +S+GC  +  ++ T+I+ 
Sbjct: 430 CDVVVQMLQKGFFPTTVEINLLIHALCKDGKPAEAKDFMEQCQSKGCTINVVNFTTVIHG 489

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
           +S+   +E ALSL  +M      PD        +                       L K
Sbjct: 490 FSRQGDLESALSLMDDMYLSNRHPDVVTYTVVVD----------------------ALGK 527

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
             RL+ A  L +K+   G  P  VTY  +I   C +G
Sbjct: 528 KGRLKEATGLVEKMLNRGLLPTPVTYRTVIHRYCEKG 564



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 110/286 (38%), Gaps = 67/286 (23%)

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M+  G  PD+ + +  ++   + GR+D A +    +   G  PD  +YN LI       +
Sbjct: 155 MQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARR 214

Query: 365 VEEALSLYGEMISMGVRPD----------------------------NSCIL-------- 388
           V +A+ + G M+  G  PD                            N   L        
Sbjct: 215 VVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYN 274

Query: 389 -------------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
                        EA E  R     +F +D   ++ +V   C + R+  A E+  ++   
Sbjct: 275 VLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISK 334

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKA 477
           G +P+VVTY+ ++ G C  G +++A  ++  M +                  K+ +  +A
Sbjct: 335 GCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEA 394

Query: 478 IELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
            ELL+K  + +  P +IT S++     ++    E  +++   L + 
Sbjct: 395 WELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKG 440



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 83/200 (41%), Gaps = 38/200 (19%)

Query: 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
           ++ L+  Y   G++  A ++   ++ +GC PD S  N  +N      +V++AL     M 
Sbjct: 132 FAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMR 191

Query: 377 SMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
            +GV P                      D+  +NCL+ GLC + R+  A E+   + + G
Sbjct: 192 RVGVEP----------------------DVYTYNCLIKGLCGARRVVDAMEMIGVMLQNG 229

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITV 496
             P+ ++Y  ++  LC E  +E+   LL  M                     + PD++T 
Sbjct: 230 CPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDA----------------GLFPDQVTY 273

Query: 497 SILEELLNKDENCHECMNLL 516
           ++L   L K  +  E +  L
Sbjct: 274 NVLIHGLAKHGHADEALEFL 293


>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
          Length = 578

 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 114/432 (26%), Positives = 185/432 (42%), Gaps = 83/432 (19%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P   S+N L+        V  A  A    LR+  SPD+ T   +I GLC  G+  +A  +
Sbjct: 154 PSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDV 213

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN---KVRVLFLDMKGRGIYPDAFVYNS 236
                A+     + P+V  Y S+IDG CK G       V +L  +M   GI P A  +  
Sbjct: 214 AKDIKAW----GLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGV 269

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEF---------VNGNGELGVICH----------- 276
           LI  YC          NT+AA+ + EE          V  N  +  +C            
Sbjct: 270 LINGYC-------KNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLM 322

Query: 277 ---------PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
                    P+ +++  ++   CK  ++  A +    M  R + PDVV+Y+ LIDGY  +
Sbjct: 323 EEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRL 382

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
           G+++DA  +  ++  +G  P+ ++YN LI  +S+      A  L  EM   G+       
Sbjct: 383 GKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGI------- 435

Query: 388 LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
                          E D+  +N L+  LC    +R A +L  ++   G EPN +TY  +
Sbjct: 436 ---------------EADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTI 480

Query: 448 ICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYV 489
           I G C +G I+ AY++   ME+                  +I +  +A +LL++M  + +
Sbjct: 481 IQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCL 540

Query: 490 KPDEITVSILEE 501
            P+ IT   ++E
Sbjct: 541 VPNGITYETIKE 552



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 155/396 (39%), Gaps = 57/396 (14%)

Query: 84  TPFMPSFNSLLGAL-----AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGV 138
            P + ++NSL+        AG  Y+V+   L + +   G+ P  V+  +L+N +CK    
Sbjct: 223 APSVATYNSLIDGYCKKGGAGNMYHVDM--LLKEMVEAGISPTAVTFGVLINGYCKNSNT 280

Query: 139 SDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVIC 198
           + A      + ++  +  VVT   LI GLC +GK  E   L  +         + PN I 
Sbjct: 281 AAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDL----GLSPNEIT 336

Query: 199 YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL 258
           +  ++ G CK G +         M  R + PD  +Y  LI  Y      ED       A+
Sbjct: 337 FGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMED-------AM 389

Query: 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS 318
            + E              P+V +Y  +I    +      A  L  +MK +GI  DVV Y+
Sbjct: 390 AVKEAMAKKG------ISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYN 443

Query: 319 SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
            LI   C  G +  A KL   +   G  P+  +YNT+I  +                   
Sbjct: 444 VLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFC------------------ 485

Query: 379 GVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
               D   I  A E+   +   +   ++  +N  +   C+  ++  A +L  ++      
Sbjct: 486 ----DKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLV 541

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC 474
           PN +TY  +      EG +EK Y   PD    IR C
Sbjct: 542 PNGITYETI-----KEGMMEKGYT--PD----IRGC 566



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 101/226 (44%), Gaps = 21/226 (9%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD V   IL++ + ++  + DA      + +K  SP+V T  CLI G    G +  ASGL
Sbjct: 367 PDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGL 426

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             +         +  +V+ Y  +I  LC  G V K   L  +M   G+ P+   YN++I+
Sbjct: 427 LDEMK----EKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQ 482

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH--PDVLSYCSIINSLCKDVLVDK 297
            +C        KGN  +A E+              C    +V++Y   I   C+   +D+
Sbjct: 483 GFC-------DKGNIKSAYEIRTRMEK--------CRKRANVVTYNVFIKYFCQIGKMDE 527

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
           A +L  +M  + ++P+ + Y ++ +G    G   D R   VS  SE
Sbjct: 528 ANDLLNEMLDKCLVPNGITYETIKEGMMEKGYTPDIRGCTVSQASE 573



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 72/171 (42%), Gaps = 4/171 (2%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++ DA+     M     +P + ++N L+   +    + +   L + +   G+  D V+ N
Sbjct: 384 KMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYN 443

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +L+   C    V  A   L  +      P+ +T   +I+G C +G    A  + T+    
Sbjct: 444 VLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRME-- 501

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            CR     NV+ Y   I   C+ G +++   L  +M  + + P+   Y ++
Sbjct: 502 KCRKRA--NVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETI 550


>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 153/331 (46%), Gaps = 44/331 (13%)

Query: 81  MQPTPFMPS---FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           M+  P  PS   +NSL+  L   +  V    L   +   GL P+ V+   L++ +CK   
Sbjct: 568 MEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGM 627

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF----------- 186
           +  AF +   +     S +++    ++ GL   G+  EA+ L  K V             
Sbjct: 628 LDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLK 687

Query: 187 -----------------DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYP 229
                             C+  ++PN I Y   I GLCK G V+  R  F  +  +G  P
Sbjct: 688 SDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVP 747

Query: 230 DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSL 289
           D F Y +LI  Y  A       GN   A  L +E +      G++  P++++Y ++IN L
Sbjct: 748 DNFTYCTLIHGYSAA-------GNVDEAFRLRDEML----RRGLV--PNIVTYNALINGL 794

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
           CK   VD+A+ LF  +  +G+ P+VV Y++LIDGYC +G +D A KL   +  EG  P  
Sbjct: 795 CKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSV 854

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
            +Y+ LIN   K   +E ++ L  +MI  GV
Sbjct: 855 VTYSALINGLCKHGDIERSMKLLNQMIKAGV 885



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 118/428 (27%), Positives = 202/428 (47%), Gaps = 45/428 (10%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSL------LGALAGKKYYVNFICLSERLNT 115
           K G+V+  +A  F   M ++   P + +++SL      LG +   K  + F  +SE+   
Sbjct: 238 KDGKVD--EAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKF--MSEK--- 290

Query: 116 IGLLPDFVSLNILMNCFCKMIGVSDAFVAL-GRILRKVFSPDVVTLGCLIRGLCMQGKFT 174
            G+  + V+  +L+  +CK   + +A   L G        PD    G LI G C  GK  
Sbjct: 291 -GVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKID 349

Query: 175 EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVY 234
           +A  L  + +    + N+    IC  S+I+G CK G +++   +   M    + PD++ Y
Sbjct: 350 DAVRLLDEMLRLGLKTNLF---IC-NSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSY 405

Query: 235 NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294
           N+L+  YC        +G+TS A  L ++ +    E      P VL+Y +++  LC+   
Sbjct: 406 NTLLDGYC-------REGHTSEAFNLCDKMLQEGIE------PTVLTYNTLLKGLCRVGA 452

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
            D A +++  M  RG+ PD V YS+L+DG   M   + A  L+  I + G      ++NT
Sbjct: 453 FDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNT 512

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTK 401
           +I+   K+ K+ EA  ++ +M  +G  PD              S + +A ++   +    
Sbjct: 513 MISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREP 572

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
               + ++N L+ GL KS RL    +L  ++   G  PN+VTY  +I G C EG ++KA+
Sbjct: 573 ISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAF 632

Query: 462 DLLPDMEE 469
               +M E
Sbjct: 633 SSYFEMTE 640



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 119/485 (24%), Positives = 207/485 (42%), Gaps = 95/485 (19%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALA--GKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +AL  F+ M      P + S NSLL  L   G+ +  +++   +++  +G++PD   ++I
Sbjct: 174 NALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYV--YQQMIRVGIVPDVFMVSI 231

Query: 128 LMNCFCKMIGVSDA-------------------------FVALGRI----------LRKV 152
           ++N FCK   V +A                         +V+LG +            K 
Sbjct: 232 MVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKG 291

Query: 153 FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFV 212
            S +VVT   LI+G C Q K  EA  +            ++P+   Y  +IDG C+ G +
Sbjct: 292 VSRNVVTYTLLIKGYCKQCKMDEAEKVLR---GMQEEAALVPDERAYGVLIDGYCRTGKI 348

Query: 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
           +    L  +M   G+  + F+ NSLI  YC      +A+G  +  ++ +           
Sbjct: 349 DDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWN----------- 397

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
               PD  SY ++++  C++    +A  L   M   GI P V+ Y++L+ G C +G  DD
Sbjct: 398 --LKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDD 455

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392
           A +++  +   G  PD   Y+TL++   K+E  E A +L+ ++++ G             
Sbjct: 456 ALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARG------------- 502

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
                    F      FN ++ GLCK  ++  A E+F K+   G  P+ +TY  +I G C
Sbjct: 503 ---------FTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYC 553

Query: 453 IEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEI 494
               + +A+ +   ME                   K R  ++  +LL +M  R + P+ +
Sbjct: 554 KASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIV 613

Query: 495 TVSIL 499
           T   L
Sbjct: 614 TYGAL 618



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 104/451 (23%), Positives = 187/451 (41%), Gaps = 80/451 (17%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           R+    L PD  S N L++ +C+    S+AF    ++L++   P V+T   L++GLC  G
Sbjct: 392 RMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVG 451

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
            F +A  ++   +    +  V P+ + Y++++DGL K         L+ D+  RG     
Sbjct: 452 AFDDALQIWHLMM----KRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSR 507

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
             +N++I   C      +A           EE  +   +LG  C PD ++Y ++I+  CK
Sbjct: 508 ITFNTMISGLCKMGKMVEA-----------EEIFDKMKDLG--CSPDGITYRTLIDGYCK 554

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
              V +A ++   M+   I P + +Y+SLI G     R+ +   L   +   G  P+  +
Sbjct: 555 ASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVT 614

Query: 352 YNTLINSYSK-----------------------------------IEKVEEALSLYGEMI 376
           Y  LI+ + K                                   + +++EA  L  +M+
Sbjct: 615 YGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMV 674

Query: 377 SMGVRPDNSCILEAAELFRTLHNTKFELDLT----------VFNCLVDGLCKSWRLRSAW 426
             G  PD+ C L++   +  +      LD +          V+N  + GLCK+ ++  A 
Sbjct: 675 DHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDAR 734

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE----------------- 469
             F  L   G  P+  TY  +I G    G +++A+ L  +M                   
Sbjct: 735 RFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGL 794

Query: 470 -KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
            K     +A  L HK+ ++ + P+ +T + L
Sbjct: 795 CKSENVDRAQRLFHKLHQKGLFPNVVTYNTL 825



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 148/328 (45%), Gaps = 72/328 (21%)

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
           G T  A  ++++ +     +G++  PDV     ++N+ CKD  VD+A      M++ G+ 
Sbjct: 205 GETHTAHYVYQQMI----RVGIV--PDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVE 258

Query: 312 PDVVVYSSLIDGYCLMG-----------------------------------RIDDARKL 336
           P++V Y SLI+GY  +G                                   ++D+A K+
Sbjct: 259 PNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKV 318

Query: 337 FVSIESEGC-IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSC----- 386
              ++ E   +PD  +Y  LI+ Y +  K+++A+ L  EM+ +G++ +    NS      
Sbjct: 319 LRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYC 378

Query: 387 ----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
               I EA  +   + +   + D   +N L+DG C+      A+ L  K+ + G EP V+
Sbjct: 379 KRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVL 438

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEEL 502
           TY  ++ GLC  G    A+D              A+++ H M KR V PDE+  S L + 
Sbjct: 439 TYNTLLKGLCRVG----AFD-------------DALQIWHLMMKRGVAPDEVGYSTLLDG 481

Query: 503 LNKDENCHECMNLLPSFLSRNQEESKLT 530
           L K EN      L    L+R   +S++T
Sbjct: 482 LFKMENFEGASTLWKDILARGFTKSRIT 509



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 6/159 (3%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           S +G V+  +A    + M+     P + ++N+L+  L   +       L  +L+  GL P
Sbjct: 760 SAAGNVD--EAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFP 817

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           + V+ N L++ +CK+  +  AF    +++ +  SP VVT   LI GLC  G    +  L 
Sbjct: 818 NVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLL 877

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLF 219
            + +    +  V   +I Y +++ G  + G + K+  L+
Sbjct: 878 NQMI----KAGVDSKLIEYCTLVQGYIRSGEMQKIHKLY 912


>gi|296081889|emb|CBI20894.3| unnamed protein product [Vitis vinifera]
          Length = 608

 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 110/478 (23%), Positives = 214/478 (44%), Gaps = 51/478 (10%)

Query: 37  SSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGA 96
           S L   S  TV  +TKL+  + E  +  EV+        + +I     P + ++ +LL A
Sbjct: 62  SCLSKTSCRTVRSRTKLMNIMIEKGRPQEVQ-----SILDSIIEGGHKPSLVTYTTLLAA 116

Query: 97  LAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPD 156
           L  +K++ +   +  ++   G+ PD +  N ++N F +   + +A     ++      P 
Sbjct: 117 LTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPT 176

Query: 157 VVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVR 216
             T   LI+G  + G+  E+  L  + ++ D   NV PN+  Y  ++   C    + K  
Sbjct: 177 TSTFNTLIKGYGIAGEPEESQKLL-ELMSQD--ENVRPNLRTYNVLVRAWCNKKNIMKAW 233

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            +   M   G+ PDA  YN++   Y          G  S A  +  E  N N        
Sbjct: 234 NVVYKMVASGLQPDAVTYNTIATAYA-------QNGEASQAEGIILEMQNSN------VQ 280

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+  + C II   CK+  + +A +    MK  G+ P++VV++SLI G+      D   ++
Sbjct: 281 PNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEV 340

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS--CIL------ 388
              +E  G  PD  +++T++N++S    +++   ++ +M+   ++PD     IL      
Sbjct: 341 LTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVR 400

Query: 389 -----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                +A E+   +  + F  ++ +F  +++G C + R+  A ++F+K+   G  PN+ T
Sbjct: 401 AGEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKT 460

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEE 501
           +  +I G                   + R+  K+ E+L  M +  V+P++ T+ ++ E
Sbjct: 461 FETLIWGYG-----------------EARQPWKSEEVLQIMEEFNVQPEKTTLLLVAE 501


>gi|115482764|ref|NP_001064975.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|22165074|gb|AAM93691.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31432889|gb|AAP54465.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639584|dbj|BAF26889.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|125575293|gb|EAZ16577.1| hypothetical protein OsJ_32049 [Oryza sativa Japonica Group]
 gi|215694503|dbj|BAG89496.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215697419|dbj|BAG91413.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|295901486|dbj|BAJ07249.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
 gi|295901490|dbj|BAJ07251.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
          Length = 506

 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 122/485 (25%), Positives = 205/485 (42%), Gaps = 92/485 (18%)

Query: 57  LSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           + + ++ G     DAL  F+ ++       + S N  L  +A +      +    R+   
Sbjct: 23  IQDRARVGSGGAEDALDVFDELLRRGIGAPIRSLNGALADVA-RDNPAAAVSRFNRMARA 81

Query: 117 G---LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF 173
           G   + P   +  IL+ C C    +   F ALG +++K F  + +    L++GLC   + 
Sbjct: 82  GASMVTPTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRT 141

Query: 174 TEASGLFTK-FVAFDCRPNV---------------------------------IPNVICY 199
            +A  +  +      C PNV                                 +PNV+ Y
Sbjct: 142 DDAMDIVLRGMTELSCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSY 201

Query: 200 ASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT-SAAL 258
           +++IDGL K G  +K    + +M  R I P+  +Y+S+I   C        KG     A+
Sbjct: 202 STVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALC--------KGQAMDKAM 253

Query: 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS 318
           E+H+  V  NG       P+  +Y S+++  C    + +A +    M S G+ P+VV YS
Sbjct: 254 EVHDRMVK-NG-----VTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYS 307

Query: 319 SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
           S +D  C  GR  +ARK+F S+   G  PD ++Y++L++ Y+    +E AL         
Sbjct: 308 SFMDYLCKNGRCTEARKIFDSMVKRGLKPDITTYSSLLHGYA----IEGAL--------- 354

Query: 379 GVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
                    +E   LF  +  +  + D  VFN L+    K  ++  A  +F K+ + G +
Sbjct: 355 ---------VEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRQQGLK 405

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSI 498
           PN VTY+ +I G C                 KI     A+ L  +M    V P+ IT +I
Sbjct: 406 PNCVTYSTLINGYC-----------------KITRMENALALFQEMVSNGVSPNFITYNI 448

Query: 499 LEELL 503
           + + L
Sbjct: 449 MLQGL 453



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 130/264 (49%), Gaps = 21/264 (7%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           +LP+ V  + ++   CK   +  A     R+++   +P+  T   L+ G C  G+ TEA 
Sbjct: 229 ILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEA- 287

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
               KF+   C   V PNV+ Y+S +D LCK+G   + R +F  M  RG+ PD   Y+SL
Sbjct: 288 ---IKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKPDITTYSSL 344

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC--HPDVLSYCSIINSLCKDVLV 295
           +  Y              A +E+H  F     +L V     PD   + ++I +  K   V
Sbjct: 345 LHGYAI----------EGALVEMHGLF-----DLMVQSDMQPDHYVFNTLIYASAKQGKV 389

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           D+A  +F  M+ +G+ P+ V YS+LI+GYC + R+++A  LF  + S G  P+  +YN +
Sbjct: 390 DEAMLVFSKMRQQGLKPNCVTYSTLINGYCKITRMENALALFQEMVSNGVSPNFITYNIM 449

Query: 356 INSYSKIEKVEEALSLYGEMISMG 379
           +    +  +   A   Y ++I  G
Sbjct: 450 LQGLFRTGRTATAKEFYVQIIKSG 473



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 108/246 (43%), Gaps = 46/246 (18%)

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGI-----IPDVVVYSSLIDGYCLMGRIDDARKLF-- 337
           I N L K +  DK  +  +D+  RG+     +P+V  ++ ++ G C   R  +A +L   
Sbjct: 127 IFNPLLKGLCADKRTDDAMDIVLRGMTELSCVPNVFSHTIILKGLCHENRSQEALELLHM 186

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397
           ++ +  GC+P+  SY+T+I+   K    ++A + Y EM+   + P+              
Sbjct: 187 MADDGGGCLPNVVSYSTVIDGLLKGGDPDKAYATYREMLDRRILPN-------------- 232

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                   + +++ ++  LCK   +  A E+  ++ + G  PN  TYT ++ G C  G  
Sbjct: 233 --------VVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSG-- 282

Query: 458 EKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLP 517
                          +  +AI+ L KM    V+P+ +T S   + L K+  C E   +  
Sbjct: 283 ---------------QLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFD 327

Query: 518 SFLSRN 523
           S + R 
Sbjct: 328 SMVKRG 333



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 111/243 (45%), Gaps = 19/243 (7%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A+   + M+    TP   ++ SL+            I   E++ + G+ P+ V+ + 
Sbjct: 249 MDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSS 308

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
            M+  CK    ++A      ++++   PD+ T   L+ G  ++G   E  GLF   V  D
Sbjct: 309 FMDYLCKNGRCTEARKIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSD 368

Query: 188 CRPN-VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            +P+  + N + YAS      K G V++  ++F  M+ +G+ P+   Y++LI  YC    
Sbjct: 369 MQPDHYVFNTLIYAS-----AKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCKITR 423

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            E+       AL L +E V+ NG       P+ ++Y  ++  L +      AKE ++ + 
Sbjct: 424 MEN-------ALALFQEMVS-NG-----VSPNFITYNIMLQGLFRTGRTATAKEFYVQII 470

Query: 307 SRG 309
             G
Sbjct: 471 KSG 473


>gi|115482066|ref|NP_001064626.1| Os10g0421800 [Oryza sativa Japonica Group]
 gi|113639235|dbj|BAF26540.1| Os10g0421800, partial [Oryza sativa Japonica Group]
          Length = 973

 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 123/497 (24%), Positives = 220/497 (44%), Gaps = 86/497 (17%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           +AL  +  M+     P + +++ L+ A   ++     + L   +   G+ P+  S  I +
Sbjct: 213 EALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICI 272

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
               +     +A+  L ++  +   PDV+T   LI+ LC  G+ ++A  +F K    D +
Sbjct: 273 RVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQK 332

Query: 190 PNVIP-------------------------------NVICYASIIDGLCKDGFVNKVRVL 218
           P+ +                                NV+ Y ++ID LC+ G V +   +
Sbjct: 333 PDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEM 392

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF-VNGNGELGVICHP 277
           F +MK +GI P+ + YNSLI  +  A  + D       ALEL +   ++G         P
Sbjct: 393 FDEMKQKGIVPEQYSYNSLISGFLKADRFGD-------ALELFKHMDIHGP-------KP 438

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           +  ++   IN   K     KA + +  MKS+GI+PDVV  ++++ G    GR+  A+++F
Sbjct: 439 NGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVF 498

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397
             +++ G  PDT +Y  +I   SK  K +EA+ ++ +MI      +N+C+          
Sbjct: 499 HELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMI------ENNCV---------- 542

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                  D+   N L+D L K+ R   AW +F +L     EP   TY  ++ GL  EG +
Sbjct: 543 ------PDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKV 596

Query: 458 EKAYDLLPDMEEK-----------IRECL-------KAIELLHKMAKRYVKPDEITVSIL 499
           ++   LL +M              I +CL        A+++L+ M  +   PD  + + +
Sbjct: 597 KEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTV 656

Query: 500 EELLNKDENCHECMNLL 516
              L K+E  +E  ++ 
Sbjct: 657 IYGLVKEERYNEAFSIF 673



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 106/416 (25%), Positives = 174/416 (41%), Gaps = 32/416 (7%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           ++A   F  +  M   P   ++N+LL  L  +      + L E +      P+ ++ N +
Sbjct: 562 DEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTI 621

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           ++C CK   V+DA   L  +  K   PD+ +   +I GL  + ++ EA  +F +      
Sbjct: 622 LDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQM----- 676

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD-MKGRGIYPDAFVYNSLIRVYCCAVNW 247
           +  +IP+     +I+    K G + +   +  D     G   D    +SL+         
Sbjct: 677 KKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGIL----- 731

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
                   A +E   EF       G+    D    C +I  LCK     +A EL    KS
Sbjct: 732 ------KKAGIEKSIEFAEIIASSGITL--DDFFLCPLIKHLCKQKKALEAHELVKKFKS 783

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            G+     +Y+SLI G      ID A  LF  ++  GC PD  +YN L+++  K  ++EE
Sbjct: 784 FGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEE 843

Query: 368 ALSLYGEMISMGVRPD----NSCIL---------EAAELFRTLHNTKFELDLTVFNCLVD 414
            L +  EM   G        N+ I          +A +L+  L +  F      +  L+D
Sbjct: 844 MLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLD 903

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           GL K+ R+  A  LF ++  YG + N   Y +++ G  I G  EK   L  DM ++
Sbjct: 904 GLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQ 959



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 116/509 (22%), Positives = 195/509 (38%), Gaps = 82/509 (16%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           +AL  F+ M      P   S+NSL+        + + + L + ++  G  P+  +  + +
Sbjct: 388 EALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFI 447

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           N + K      A      +  K   PDVV    ++ GL   G+   A  +F +  A    
Sbjct: 448 NYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAM--- 504

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
             V P+ I Y  +I    K    ++   +F DM      PD    NSLI     A   ++
Sbjct: 505 -GVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDE 563

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
           A        E++ E  +G             +Y +++  L ++  V +   L  +M    
Sbjct: 564 AWRIFYQLKEMNLEPTDG-------------TYNTLLAGLGREGKVKEVMHLLEEMYHSN 610

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
             P+++ Y++++D  C  G ++DA  +  S+ ++GCIPD SSYNT+I    K E+  EA 
Sbjct: 611 YPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAF 670

Query: 370 SLYGEM-----------------------------------ISMGVRPDNSC-------I 387
           S++ +M                                   +  G + D S        I
Sbjct: 671 SIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGI 730

Query: 388 LEAA------ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
           L+ A      E    + ++   LD      L+  LCK  +   A EL KK   +G     
Sbjct: 731 LKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKT 790

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEE 501
             Y  +ICGL  E  I+ A  L  +M+E    C                PDE T ++L +
Sbjct: 791 GLYNSLICGLVDENLIDIAEGLFAEMKE--LGC---------------GPDEFTYNLLLD 833

Query: 502 LLNKDENCHECMNLLPSFLSRNQEESKLT 530
            + K     E + +      +  E + +T
Sbjct: 834 AMGKSMRIEEMLKVQEEMHRKGYESTYVT 862



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 156/359 (43%), Gaps = 58/359 (16%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G V  NDAL     M      P + S+N+++  L  ++ Y     +  ++  + L+PD
Sbjct: 627 KNGAV--NDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKV-LIPD 683

Query: 122 FVSLNILMNCFCKMIG--------VSDAFVALGR-------------ILRKV-------F 153
           + +L  ++  F K IG        + D F+  G              IL+K        F
Sbjct: 684 YATLCTILPSFVK-IGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEF 742

Query: 154 SPDVVTLGC---------LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           +  + + G          LI+ LC Q K  EA  L  KF +F     V      Y S+I 
Sbjct: 743 AEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSF----GVSLKTGLYNSLIC 798

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           GL  +  ++    LF +MK  G  PD F YN L+     ++  E+        L++ EE 
Sbjct: 799 GLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEM-------LKVQEEM 851

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
                E         ++Y +II+ L K   +++A +L+ ++ S+G  P    Y  L+DG 
Sbjct: 852 HRKGYE------STYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGL 905

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
              GRI+DA  LF  +   GC  + + YN L+N +      E+   L+ +M+  G+ PD
Sbjct: 906 LKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPD 964



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 95/214 (44%), Gaps = 15/214 (7%)

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
           E G++   +  +Y  ++  L K     +A E++  M   G++P V  YS L+  +     
Sbjct: 188 EAGIVL--NAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRD 245

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP------- 382
           ++    L   +E+ G  P+  SY   I    + ++ +EA  +  +M + G +P       
Sbjct: 246 VETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTV 305

Query: 383 ------DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
                 D   I +A ++F  +  +  + D   +  L+D    +   +S  E++  +   G
Sbjct: 306 LIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADG 365

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
              NVV YT +I  LC  G + +A ++  +M++K
Sbjct: 366 YNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQK 399



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 93/234 (39%), Gaps = 30/234 (12%)

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           V    E+F  M+ + +  +V  ++++  G  + G +  A      ++  G + +  +YN 
Sbjct: 141 VGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNG 200

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPD--NSCILEAA-----------ELFRTLHNTK 401
           L+    K     EAL +Y  M+  GV P      +L  A            L R +    
Sbjct: 201 LVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHG 260

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
            + ++  +   +  L ++ R   A+ +  K+   G +P+V+T+TV+I  LC  G I  A 
Sbjct: 261 VKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAK 320

Query: 462 DLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
           D                 +  KM K   KPD +T   L +    + +    M +
Sbjct: 321 D-----------------VFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEI 357


>gi|15234349|ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g28010
 gi|4455360|emb|CAB36770.1| putative protein [Arabidopsis thaliana]
 gi|7269655|emb|CAB79603.1| putative protein [Arabidopsis thaliana]
 gi|332660020|gb|AEE85420.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 130/465 (27%), Positives = 197/465 (42%), Gaps = 72/465 (15%)

Query: 53  LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSER 112
           LLK L  N + G+     A+     M      P + S+N+++      K     + L+  
Sbjct: 148 LLKGLCRNLECGK-----AVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANE 202

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +   G     V+  IL++ FCK   + +A   L  +       D+V    LIRG C  G+
Sbjct: 203 MKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGE 262

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
                 LF + +         P  I Y ++I G CK G + +   +F  M  RG+ P+ +
Sbjct: 263 LDRGKALFDEVL----ERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVY 318

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            Y  LI   C         G T  AL+L    +  + E      P+ ++Y  IIN LCKD
Sbjct: 319 TYTGLIDGLC-------GVGKTKEALQLLNLMIEKDEE------PNAVTYNIIINKLCKD 365

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI--ESEGCIPDTS 350
            LV  A E+   MK R   PD + Y+ L+ G C  G +D+A KL   +  +S    PD  
Sbjct: 366 GLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVI 425

Query: 351 SYNTLINSYSKIEKVEEALSLYG---EMISMGVRPDNSCIL----------EAAELFRTL 397
           SYN LI+   K  ++ +AL +Y    E +  G R   + +L          +A EL++ +
Sbjct: 426 SYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQI 485

Query: 398 HNTKF---------------------------------ELDLTVF--NCLVDGLCKSWRL 422
            ++K                                  EL  +VF  NCL+  LCK   L
Sbjct: 486 SDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSL 545

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
             AW LF+++ R    P+VV++ +MI G    G I+ A  LL  M
Sbjct: 546 DQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGM 590



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 121/461 (26%), Positives = 201/461 (43%), Gaps = 95/461 (20%)

Query: 39  LHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALA 98
           ++S  V+   E    L+ L E+S     +L +A+  F   +    +      N +   + 
Sbjct: 28  VYSKLVNAFSETETKLRSLCEDSNP---QLKNAVSVFQQAVDSGSSLAFAGNNLMAKLVR 84

Query: 99  GKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVV 158
            + + + F    + L T   + +FVSL+ L+ C+ +M     AF  L  +L++ F+ +V 
Sbjct: 85  SRNHELAFSFYRKMLETDTFI-NFVSLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVY 143

Query: 159 TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVL 218
               L++GL                    CR     N+ C               K   L
Sbjct: 144 NHNILLKGL--------------------CR-----NLEC--------------GKAVSL 164

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD 278
             +M+   + PD F YN++IR +C     E        ALEL  E + G+G     C   
Sbjct: 165 LREMRRNSLMPDVFSYNTVIRGFCEGKELE-------KALELANE-MKGSG-----CSWS 211

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
           ++++  +I++ CK   +D+A     +MK  G+  D+VVY+SLI G+C  G +D  + LF 
Sbjct: 212 LVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFD 271

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398
            +   G  P   +YNTLI  + K+ +++EA  ++  MI  GVRP                
Sbjct: 272 EVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRP---------------- 315

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
                 ++  +  L+DGLC   + + A +L   +     EPN VTY ++I  LC +G   
Sbjct: 316 ------NVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDG--- 366

Query: 459 KAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
               L+ D          A+E++  M KR  +PD IT +IL
Sbjct: 367 ----LVAD----------AVEIVELMKKRRTRPDNITYNIL 393



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 184/413 (44%), Gaps = 60/413 (14%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L +A   F +MI     P + ++  L+  L G       + L   +      P+ V+ N
Sbjct: 297 QLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYN 356

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           I++N  CK   V+DA   +  + ++   PD +T   L+ GLC +G   EAS L   ++  
Sbjct: 357 IIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLL--YLML 414

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNK---VRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
                  P+VI Y ++I GLCK+  +++   +  L ++  G G   D    N L+     
Sbjct: 415 KDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAG---DRVTTNILL----- 466

Query: 244 AVNWEDAKGNTSAALELHEE---------------FVNG-------NGELGVIC------ 275
             N     G+ + A+EL ++                ++G       N   G++C      
Sbjct: 467 --NSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSE 524

Query: 276 -HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
             P V  Y  +++SLCK+  +D+A  LF +M+     PDVV ++ +IDG    G I  A 
Sbjct: 525 LQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAE 584

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS--------C 386
            L V +   G  PD  +Y+ LIN + K+  ++EA+S + +M+  G  PD          C
Sbjct: 585 SLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYC 644

Query: 387 ILEA-----AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
           I +       EL + L +    LD  +   ++D +C S    +  +L K+L R
Sbjct: 645 ISQGETDKLTELVKKLVDKDIVLDKELTCTVMDYMCNS---SANMDLAKRLLR 694


>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1136

 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 112/456 (24%), Positives = 207/456 (45%), Gaps = 51/456 (11%)

Query: 78  MIHMQPTPFMPS---FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           M  M+ + + P+   +N++L     K  +   I L + + + G+  D  + N+L++  C+
Sbjct: 256 MQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCR 315

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
              ++  ++ L  + +++  P+ VT   LI G   +GK   AS L  + ++F     + P
Sbjct: 316 SNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSF----GLSP 371

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           N + + ++IDG   +G   +   +F  M+ +G+ P    Y  L+   C    ++ A+G  
Sbjct: 372 NHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFY 431

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
                     +  NG    +C   + +Y  +I+ LCK+  +D+A  L  +M   GI PD+
Sbjct: 432 MR--------MKRNG----VCVGRI-TYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDI 478

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           V YS+LI+G+C +GR   A+++   I   G  P+   Y+TLI +  ++  ++EA+ +Y  
Sbjct: 479 VTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEA 538

Query: 375 MISMGVRPDN-------------SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
           MI  G   D+               + EA E  R + +     +   F+CL++G   S  
Sbjct: 539 MILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGE 598

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------ 469
              A+ +F ++ + G  P   TY  ++ GLC  G + +A   L  +              
Sbjct: 599 GLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNT 658

Query: 470 ------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                 K     KA+ L  +M +R + PD  T + L
Sbjct: 659 LLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSL 694



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 158/364 (43%), Gaps = 30/364 (8%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  P   + N ++    K       +  L  +L++   PDV T   LI  LC +G F ++
Sbjct: 193 GFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKS 252

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
           S L  K      +    P ++ Y +++   CK G       L   MK +G+  D   YN 
Sbjct: 253 SYLMQKME----KSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNM 308

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI   C +     AKG      ++ +  +          HP+ ++Y ++IN    +  V 
Sbjct: 309 LIHDLCRSNRI--AKGYL-LLRDMRKRMI----------HPNEVTYNTLINGFSNEGKVL 355

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A +L  +M S G+ P+ V +++LIDG+   G   +A K+F  +E++G  P   SY  L+
Sbjct: 356 IASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLL 415

Query: 357 NSYSKIEKVEEALSLYGEMISMGV-------------RPDNSCILEAAELFRTLHNTKFE 403
           +   K  + + A   Y  M   GV                N  + EA  L   +     +
Sbjct: 416 DGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGID 475

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D+  ++ L++G CK  R ++A E+  ++ R G  PN + Y+ +I   C  G +++A  +
Sbjct: 476 PDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRI 535

Query: 464 LPDM 467
              M
Sbjct: 536 YEAM 539



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 109/407 (26%), Positives = 175/407 (42%), Gaps = 52/407 (12%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSER----LNTIGLLPD 121
           L +A+  +  MI    T    +FN L+ +L  AGK      +  +E     + + G+LP+
Sbjct: 529 LKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGK------VAEAEEFMRCMTSDGILPN 582

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            VS + L+N +        AF     + +    P   T G L++GLC  G   EA     
Sbjct: 583 TVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLK 642

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
              A    P  +  V+ Y +++  +CK G + K   LF +M  R I PD++ Y SLI   
Sbjct: 643 SLHAV---PAAVDTVM-YNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGL 698

Query: 242 CCAVNWEDAKGNTSAALELHEEF-VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
           C        KG T  A+   +E    GN        P+ + Y   ++ + K         
Sbjct: 699 C-------RKGKTVIAILFAKEAEARGN------VLPNKVMYTCFVDGMFKAGQWKAGIY 745

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
               M + G  PD+V  +++IDGY  MG+I+    L   + ++   P+ ++YN L++ YS
Sbjct: 746 FREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYS 805

Query: 361 KIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           K + V  +  LY  +I  G+ PD            T H+            LV G+C+S 
Sbjct: 806 KRKDVSTSFLLYRSIILNGILPDK----------LTCHS------------LVLGICESN 843

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            L    ++ K     G E +  T+ ++I   C  G I  A+DL+  M
Sbjct: 844 MLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVM 890



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 106/475 (22%), Positives = 179/475 (37%), Gaps = 87/475 (18%)

Query: 71   ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
            A   F+ M  +   P   ++ SLL  L    +        + L+ +    D V  N L+ 
Sbjct: 602  AFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLT 661

Query: 131  CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
              CK   ++ A    G ++++   PD  T   LI GLC +GK T  + LF K    + R 
Sbjct: 662  AMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGK-TVIAILFAK--EAEARG 718

Query: 191  NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
            NV+PN + Y   +DG+ K G           M   G  PD    N++I  Y         
Sbjct: 719  NVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGY-------SR 771

Query: 251  KGNTSAALELHEEFVNGNG-----ELGVICH------------------------PDVLS 281
             G      +L  E  N NG        ++ H                        PD L+
Sbjct: 772  MGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLT 831

Query: 282  YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG------------- 328
              S++  +C+  +++   ++      RG+  D   ++ LI   C  G             
Sbjct: 832  CHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMT 891

Query: 329  ----------------------RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
                                  R  ++R +   +  +G  P++  Y  LIN   ++  ++
Sbjct: 892  SLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIK 951

Query: 367  EALSLYGEMISMGVRPDN---SCIL----------EAAELFRTLHNTKFELDLTVFNCLV 413
             A  +  EMI+  + P N   S ++          EA  L R +   K    +  F  L+
Sbjct: 952  TAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLM 1011

Query: 414  DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
               CK+  +  A EL   +   G + ++V+Y V+I GLC +G +  A++L  +M+
Sbjct: 1012 HLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMK 1066



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 161/365 (44%), Gaps = 44/365 (12%)

Query: 107  ICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166
            I   E+++ +G  PD V+ N +++ + +M  +      L  +  +   P++ T   L+ G
Sbjct: 744  IYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHG 803

Query: 167  LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
               +   + +  L+   +       ++P+ +   S++ G+C+   +     +      RG
Sbjct: 804  YSKRKDVSTSFLLYRSIIL----NGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRG 859

Query: 227  IYPDAFVYNSLIRVYCCA---VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
            +  D + +N LI   CCA   +NW         A +L    V     LG+    D     
Sbjct: 860  VEVDRYTFNMLIS-KCCANGEINW---------AFDL----VKVMTSLGISLDKDTCD-- 903

Query: 284  SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV----S 339
            ++++ L ++    +++ +  +M  +GI P+   Y  LI+G C   R+ D +  FV     
Sbjct: 904  AMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLC---RVGDIKTAFVVKEEM 960

Query: 340  IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP-------------DNSC 386
            I  + C P+ +  + ++ + +K  K +EA  L   M+ M + P              N  
Sbjct: 961  IAHKICPPNVAE-SAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGN 1019

Query: 387  ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTV 446
            ++EA EL   + N   +LDL  +N L+ GLC    +  A+EL++++   G   N  TY  
Sbjct: 1020 VIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKA 1079

Query: 447  MICGL 451
            +I GL
Sbjct: 1080 LIRGL 1084



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 119/295 (40%), Gaps = 59/295 (20%)

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
           VY+ LIRVY         +G    +LE+        G  G   +P V +  +I+ S+ K 
Sbjct: 165 VYDILIRVYL-------REGMIQDSLEIFRLM----GLYGF--NPSVYTCNAILGSVVKS 211

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
                      +M  R I PDV  ++ LI+  C  G  + +  L   +E  G  P   +Y
Sbjct: 212 GEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTY 271

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCL 412
           NT+++ Y K  + + A+ L   M S GV                      + D+  +N L
Sbjct: 272 NTVLHWYCKKGRFKAAIELLDHMKSKGV----------------------DADVCTYNML 309

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM----- 467
           +  LC+S R+   + L + + +    PN VTY  +I G   EG +  A  LL +M     
Sbjct: 310 IHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGL 369

Query: 468 ----------------EEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
                           E   +E LK   + + M  + + P E++  +L + L K+
Sbjct: 370 SPNHVTFNALIDGHISEGNFKEALK---MFYMMEAKGLTPSEVSYGVLLDGLCKN 421


>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1080

 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 123/497 (24%), Positives = 220/497 (44%), Gaps = 86/497 (17%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           +AL  +  M+     P + +++ L+ A   ++     + L   +   G+ P+  S  I +
Sbjct: 178 EALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICI 237

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
               +     +A+  L ++  +   PDV+T   LI+ LC  G+ ++A  +F K    D +
Sbjct: 238 RVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQK 297

Query: 190 PNVIP-------------------------------NVICYASIIDGLCKDGFVNKVRVL 218
           P+ +                                NV+ Y ++ID LC+ G V +   +
Sbjct: 298 PDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEM 357

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF-VNGNGELGVICHP 277
           F +MK +GI P+ + YNSLI  +  A  + D       ALEL +   ++G         P
Sbjct: 358 FDEMKQKGIVPEQYSYNSLISGFLKADRFGD-------ALELFKHMDIHGP-------KP 403

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           +  ++   IN   K     KA + +  MKS+GI+PDVV  ++++ G    GR+  A+++F
Sbjct: 404 NGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVF 463

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397
             +++ G  PDT +Y  +I   SK  K +EA+ ++ +MI      +N+C+          
Sbjct: 464 HELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMI------ENNCV---------- 507

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                  D+   N L+D L K+ R   AW +F +L     EP   TY  ++ GL  EG +
Sbjct: 508 ------PDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKV 561

Query: 458 EKAYDLLPDMEEK-----------IRECL-------KAIELLHKMAKRYVKPDEITVSIL 499
           ++   LL +M              I +CL        A+++L+ M  +   PD  + + +
Sbjct: 562 KEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTV 621

Query: 500 EELLNKDENCHECMNLL 516
              L K+E  +E  ++ 
Sbjct: 622 IYGLVKEERYNEAFSIF 638



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 125/449 (27%), Positives = 196/449 (43%), Gaps = 71/449 (15%)

Query: 62   KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
            K+G V  NDAL     M      P + S+N+++  L  ++ Y     +  ++  + L+PD
Sbjct: 592  KNGAV--NDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKV-LIPD 648

Query: 122  FVSLNILMNCFCKMIG--------VSDAFVALGR-------------ILRKV-------F 153
            + +L  ++  F K IG        + D F+  G              IL+K        F
Sbjct: 649  YATLCTILPSFVK-IGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEF 707

Query: 154  SPDVVTLGC---------LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
            +  + + G          LI+ LC Q K  EA  L  KF +F     V      Y S+I 
Sbjct: 708  AEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSF----GVSLKTGLYNSLIC 763

Query: 205  GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
            GL  +  ++    LF +MK  G  PD F YN L+     ++  E+        L++ EE 
Sbjct: 764  GLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEM-------LKVQEEM 816

Query: 265  VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
                 E         ++Y +II+ L K   +++A +L+ ++ S+G  P    Y  L+DG 
Sbjct: 817  HRKGYE------STYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGL 870

Query: 325  CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
               GRI+DA  LF  +   GC  + + YN L+N +      E+   L+ +M+  G+ PD 
Sbjct: 871  LKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDI 930

Query: 385  S-------CILEAAEL------FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
                     + +A +L      FR L     E DL  +N L+DGL KS RL  A  LF +
Sbjct: 931  KSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNE 990

Query: 432  LPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
            + + G  PN+ TY  +I  L   G   +A
Sbjct: 991  MQKKGIVPNLYTYNSLILHLGKAGKAAEA 1019



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 140/301 (46%), Gaps = 17/301 (5%)

Query: 89   SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
            ++N LL A+         + + E ++  G    +V+ N +++   K   +  A      +
Sbjct: 792  TYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNL 851

Query: 149  LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
            + + FSP   T G L+ GL   G+  +A  LF + + + C+ N       Y  +++G   
Sbjct: 852  MSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCT----IYNILLNGHRI 907

Query: 209  DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
             G   KV  LF DM  +GI PD   Y  +I   C A    D        LE+  E     
Sbjct: 908  AGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLE----- 962

Query: 269  GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                    PD+++Y  +I+ L K   +++A  LF +M+ +GI+P++  Y+SLI      G
Sbjct: 963  --------PDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAG 1014

Query: 329  RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL 388
            +  +A K++  + ++G  P+  +YN LI  YS     + A + YG MI  G  P++S  +
Sbjct: 1015 KAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSSTYM 1074

Query: 389  E 389
            +
Sbjct: 1075 Q 1075



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 119/480 (24%), Positives = 199/480 (41%), Gaps = 50/480 (10%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           ++A   F  +  M   P   ++N+LL  L  +      + L E +      P+ ++ N +
Sbjct: 527 DEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTI 586

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           ++C CK   V+DA   L  +  K   PD+ +   +I GL  + ++ EA  +F +      
Sbjct: 587 LDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQM----- 641

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD-MKGRGIYPDAFVYNSLIRVYCCAVNW 247
           +  +IP+     +I+    K G + +   +  D     G   D    +SL+         
Sbjct: 642 KKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGIL----- 696

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
                   A +E   EF       G+    D    C +I  LCK     +A EL    KS
Sbjct: 697 ------KKAGIEKSIEFAEIIASSGITL--DDFFLCPLIKHLCKQKKALEAHELVKKFKS 748

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            G+     +Y+SLI G      ID A  LF  ++  GC PD  +YN L+++  K  ++EE
Sbjct: 749 FGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEE 808

Query: 368 ALSLYGEMISMGVRPD----NSCIL---------EAAELFRTLHNTKFELDLTVFNCLVD 414
            L +  EM   G        N+ I          +A +L+  L +  F      +  L+D
Sbjct: 809 MLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLD 868

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK---- 470
           GL K+ R+  A  LF ++  YG + N   Y +++ G  I G  EK   L  DM ++    
Sbjct: 869 GLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINP 928

Query: 471 --------IRECLKAIEL------LHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                   I    KA +L        ++ +  ++PD IT ++L + L K +   E ++L 
Sbjct: 929 DIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLF 988



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 155/359 (43%), Gaps = 47/359 (13%)

Query: 90   FNSLLGALAGKKYYVNFICLSERL----NTIGLLPDFVSLNILMNCFCKMIGVSDAFVAL 145
            +NSL+  L  +    N I ++E L      +G  PD  + N+L++   K + + +     
Sbjct: 758  YNSLICGLVDE----NLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQ 813

Query: 146  GRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDG 205
              + RK +    VT   +I GL    +  +A  L+   ++        P    Y  ++DG
Sbjct: 814  EEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMS----QGFSPTPCTYGPLLDG 869

Query: 206  LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
            L K G +     LF +M   G   +  +YN L+       N     GNT     L ++ V
Sbjct: 870  LLKAGRIEDAENLFNEMLEYGCKANCTIYNILL-------NGHRIAGNTEKVCHLFQDMV 922

Query: 266  NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
            +         +PD+ SY  II++LCK   ++     F  +   G+ PD++ Y+ LIDG  
Sbjct: 923  DQG------INPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLG 976

Query: 326  LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
               R+++A  LF  ++ +G +P+  +YN+LI    K  K  EA  +Y E+++ G +P   
Sbjct: 977  KSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKP--- 1033

Query: 386  CILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
                               ++  +N L+ G   S    SA+  + ++   G  PN  TY
Sbjct: 1034 -------------------NVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSSTY 1073



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 116/509 (22%), Positives = 195/509 (38%), Gaps = 82/509 (16%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           +AL  F+ M      P   S+NSL+        + + + L + ++  G  P+  +  + +
Sbjct: 353 EALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFI 412

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           N + K      A      +  K   PDVV    ++ GL   G+   A  +F +  A    
Sbjct: 413 NYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAM--- 469

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
             V P+ I Y  +I    K    ++   +F DM      PD    NSLI     A   ++
Sbjct: 470 -GVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDE 528

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
           A        E++ E  +G             +Y +++  L ++  V +   L  +M    
Sbjct: 529 AWRIFYQLKEMNLEPTDG-------------TYNTLLAGLGREGKVKEVMHLLEEMYHSN 575

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
             P+++ Y++++D  C  G ++DA  +  S+ ++GCIPD SSYNT+I    K E+  EA 
Sbjct: 576 YPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAF 635

Query: 370 SLYGEM-----------------------------------ISMGVRPDNSC-------I 387
           S++ +M                                   +  G + D S        I
Sbjct: 636 SIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGI 695

Query: 388 LEAA------ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
           L+ A      E    + ++   LD      L+  LCK  +   A EL KK   +G     
Sbjct: 696 LKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKT 755

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEE 501
             Y  +ICGL  E  I+ A  L  +M+E    C                PDE T ++L +
Sbjct: 756 GLYNSLICGLVDENLIDIAEGLFAEMKE--LGC---------------GPDEFTYNLLLD 798

Query: 502 LLNKDENCHECMNLLPSFLSRNQEESKLT 530
            + K     E + +      +  E + +T
Sbjct: 799 AMGKSMRIEEMLKVQEEMHRKGYESTYVT 827



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 95/214 (44%), Gaps = 15/214 (7%)

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
           E G++   +  +Y  ++  L K     +A E++  M   G++P V  YS L+  +     
Sbjct: 153 EAGIVL--NAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRD 210

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP------- 382
           ++    L   +E+ G  P+  SY   I    + ++ +EA  +  +M + G +P       
Sbjct: 211 VETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTV 270

Query: 383 ------DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
                 D   I +A ++F  +  +  + D   +  L+D    +   +S  E++  +   G
Sbjct: 271 LIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADG 330

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
              NVV YT +I  LC  G + +A ++  +M++K
Sbjct: 331 YNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQK 364



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 56/125 (44%)

Query: 67   ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            +LND L +F  ++ M   P + ++N L+  L   K     + L   +   G++P+  + N
Sbjct: 945  QLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYN 1004

Query: 127  ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
             L+    K    ++A      +L K + P+V T   LIRG  + G    A   + + +  
Sbjct: 1005 SLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVG 1064

Query: 187  DCRPN 191
             C PN
Sbjct: 1065 GCLPN 1069



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 93/234 (39%), Gaps = 30/234 (12%)

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           V    E+F  M+ + +  +V  ++++  G  + G +  A      ++  G + +  +YN 
Sbjct: 106 VGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNG 165

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPD--NSCILEAA-----------ELFRTLHNTK 401
           L+    K     EAL +Y  M+  GV P      +L  A            L R +    
Sbjct: 166 LVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHG 225

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
            + ++  +   +  L ++ R   A+ +  K+   G +P+V+T+TV+I  LC  G I  A 
Sbjct: 226 VKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAK 285

Query: 462 DLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
           D                 +  KM K   KPD +T   L +    + +    M +
Sbjct: 286 D-----------------VFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEI 322



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 67/164 (40%), Gaps = 4/164 (2%)

Query: 74   FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
             F  M+     P + S+  ++  L       + +    +L  +GL PD ++ N+L++   
Sbjct: 917  LFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLG 976

Query: 134  KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
            K   + +A      + +K   P++ T   LI  L   GK  EA  ++ + +    +    
Sbjct: 977  KSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWK---- 1032

Query: 194  PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            PNV  Y ++I G    G  +     +  M   G  P++  Y  L
Sbjct: 1033 PNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSSTYMQL 1076


>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
 gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
          Length = 347

 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 154/327 (47%), Gaps = 30/327 (9%)

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN 213
           +PD++T   ++ G+C +G+  +A        ++   PN +     Y  ++ GL       
Sbjct: 13  APDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVS----YNIVLKGLFTAERWE 68

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
               L  +M  +G  P+   +N LI   C        +G    A+E+ E+          
Sbjct: 69  DAEKLMEEMAHKGCPPNVVTFNMLISFLC-------RRGLVEPAMEVLEQIPKYG----- 116

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
            C P+ LSY  ++++ CK   +DKA      M SRG  PD+V Y++L+   C  G +D A
Sbjct: 117 -CTPNSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVA 175

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---------- 383
             L   ++ +GC P   SYNT+I+  +K  K +EAL L  EMIS G++PD          
Sbjct: 176 IDLLHQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASG 235

Query: 384 ---NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
                 I EA   F  + +      + ++N ++ GLCK     +A +LF  +   G  PN
Sbjct: 236 LCREDKIEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPN 295

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDM 467
             TYT+++ GL  EG +++A DLL  +
Sbjct: 296 ESTYTILVEGLAYEGLVKEARDLLGQL 322



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 154/321 (47%), Gaps = 17/321 (5%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N    E  ++DA+ F   +      P   S+N +L  L   + + +   L E +   G  
Sbjct: 24  NGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCP 83

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ V+ N+L++  C+   V  A   L +I +   +P+ ++   L+   C Q K  +A   
Sbjct: 84  PNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAF 143

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
               V+  C     P+++ Y +++  LC++G V+    L   +KG+G  P    YN++I 
Sbjct: 144 VELMVSRGC----YPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSPVLISYNTVI- 198

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
                 +     G T  ALEL +E ++          PD+++Y +I + LC++  +++A 
Sbjct: 199 ------DGLTKAGKTKEALELLDEMISKG------LQPDIITYTTIASGLCREDKIEEAI 246

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
             F  ++  GI P VV+Y++++ G C      +A  LF  + S GC+P+ S+Y  L+   
Sbjct: 247 RTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPNESTYTILVEGL 306

Query: 360 SKIEKVEEALSLYGEMISMGV 380
           +    V+EA  L G++ S GV
Sbjct: 307 AYEGLVKEARDLLGQLCSRGV 327



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 135/302 (44%), Gaps = 17/302 (5%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
            P + ++N +L  +  +    + +   E L + G  P+ VS NI++          DA  
Sbjct: 13  APDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGLFTAERWEDAEK 72

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
            +  +  K   P+VVT   LI  LC +G    A  +  +   + C     PN + Y  ++
Sbjct: 73  LMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGC----TPNSLSYNPLL 128

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
              CK   ++K       M  RG YPD   YN+L+   C         G    A++L  +
Sbjct: 129 HAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALC-------RNGEVDVAIDLLHQ 181

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
              G G     C P ++SY ++I+ L K     +A EL  +M S+G+ PD++ Y+++  G
Sbjct: 182 L-KGKG-----CSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASG 235

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            C   +I++A + F  ++  G  P    YN ++    K  +   A+ L+  MIS G  P+
Sbjct: 236 LCREDKIEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPN 295

Query: 384 NS 385
            S
Sbjct: 296 ES 297



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 137/323 (42%), Gaps = 66/323 (20%)

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKE---------------------------------- 300
           C PD+++Y  ++N +C++  VD A E                                  
Sbjct: 12  CAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGLFTAERWEDAE 71

Query: 301 -LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            L  +M  +G  P+VV ++ LI   C  G ++ A ++   I   GC P++ SYN L++++
Sbjct: 72  KLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYNPLLHAF 131

Query: 360 SKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDL 406
            K +K+++A++    M+S G  PD             N  +  A +L   L        L
Sbjct: 132 CKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSPVL 191

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             +N ++DGL K+ + + A EL  ++   G +P+++TYT +  GLC E  IE+A      
Sbjct: 192 ISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCREDKIEEAIRTFCK 251

Query: 467 MEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDEN 508
           +++                  K RE   AI+L   M      P+E T +IL E L  +  
Sbjct: 252 VQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPNESTYTILVEGLAYEGL 311

Query: 509 CHECMNLLPSFLSRNQEESKLTR 531
             E  +LL    SR     K  +
Sbjct: 312 VKEARDLLGQLCSRGVVNKKFMK 334



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 113/249 (45%), Gaps = 40/249 (16%)

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           +L  +M+ +G  PD++ Y+ +++G C  GR+DDA +   ++ S G  P+T SYN ++   
Sbjct: 2   KLLDEMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGL 61

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
              E+ E+A  L  EM   G  P                      ++  FN L+  LC+ 
Sbjct: 62  FTAERWEDAEKLMEEMAHKGCPP----------------------NVVTFNMLISFLCRR 99

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL---------PDMEE- 469
             +  A E+ +++P+YG  PN ++Y  ++   C +  ++KA   +         PD+   
Sbjct: 100 GLVEPAMEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSY 159

Query: 470 --------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
                   +  E   AI+LLH++  +   P  I+ + + + L K     E + LL   +S
Sbjct: 160 NTLLTALCRNGEVDVAIDLLHQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMIS 219

Query: 522 RNQEESKLT 530
           +  +   +T
Sbjct: 220 KGLQPDIIT 228



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 79/205 (38%), Gaps = 31/205 (15%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +++ A+ F   M+     P + S+N+LL AL         I L  +L   G  P  +S N
Sbjct: 136 KMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSPVLISYN 195

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            +++   K     +A   L  ++ K   PD++T   +  GLC + K  EA   F K    
Sbjct: 196 TVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCREDKIEEAIRTFCKVQDM 255

Query: 187 DCRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKV 215
             RP V+                               PN   Y  +++GL  +G V + 
Sbjct: 256 GIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPNESTYTILVEGLAYEGLVKEA 315

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRV 240
           R L   +  RG+    F+    +++
Sbjct: 316 RDLLGQLCSRGVVNKKFMKKGAVKM 340


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 110/409 (26%), Positives = 173/409 (42%), Gaps = 72/409 (17%)

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
           C C M     AF  +  ++RK F PD  T   +I  LC   K  +A  LF +  +     
Sbjct: 429 CLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSV---- 484

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
            VIP+V  Y  +ID  CK G + + R  F +M+  G  P    Y +L+  Y         
Sbjct: 485 GVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYL-------K 537

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM----- 305
                 A ++    V+        C P+ ++Y ++++ LCK     KA E++  M     
Sbjct: 538 TKQVPQASDIFHRMVDAG------CAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSD 591

Query: 306 -----------KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
                       +  I P+VV Y +LIDG C   ++ DA++L   + S GC P+   Y+ 
Sbjct: 592 NVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDA 651

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           LI+ + K+ K++ A  ++  M   G  P             T+H          +  L+D
Sbjct: 652 LIDGFCKVGKLDNAQEVFFRMSKCGYLP-------------TVHT---------YTSLID 689

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC 474
            + K  RL  A ++  ++      PNVVTYT MI GLC                 +I EC
Sbjct: 690 AMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLC-----------------RIGEC 732

Query: 475 LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
            KA++LL  M KR   P+ +T + L + L K       + L    +++ 
Sbjct: 733 QKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQG 781



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 119/434 (27%), Positives = 196/434 (45%), Gaps = 49/434 (11%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +  A  +F+ M  +  +P + ++ +LL A    K       +  R+   G  P+ ++ + 
Sbjct: 506 IEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSA 565

Query: 128 LMNCFCK-------------MIGVSD----AFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           L++  CK             MIG SD     F   G     + +P+VVT G LI GLC  
Sbjct: 566 LVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSI-APNVVTYGALIDGLCKA 624

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
            K  +A  L     +  C PN I     Y ++IDG CK G ++  + +F  M   G  P 
Sbjct: 625 HKVVDAQELLDVMSSNGCEPNHI----IYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPT 680

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
              Y SLI        ++D +     A+++  + +  +      C P+V++Y ++I+ LC
Sbjct: 681 VHTYTSLIDAM-----FKDRR--LDLAIKVLSQMLESS------CTPNVVTYTAMIDGLC 727

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           +     KA +L   M+ RG  P+VV Y+SLIDG    G++D + +LF  + ++GC P+  
Sbjct: 728 RIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYV 787

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMG-----------VRPDNSCILEAAELFRTLHN 399
           +Y  LIN       ++EA SL  EM               V+  +   + +  L   L +
Sbjct: 788 TYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGFSKKFIASLGLLEELES 847

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV---TYTVMICGLCIEGG 456
                   V+  L+D   K+ RL  A EL K++       N+    TYT +I  LC+   
Sbjct: 848 HGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNITSKDTYTSLIQALCLASQ 907

Query: 457 IEKAYDLLPDMEEK 470
           +EKA++L  ++  K
Sbjct: 908 LEKAFELYSEITRK 921



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 132/548 (24%), Positives = 205/548 (37%), Gaps = 115/548 (20%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P   ++N+L+  LA          + + ++ +G   D  ++       CK    SDA V 
Sbjct: 205 PSGATYNALVQVLATAGQMDMGFRVQKEMSELGFCTDKFTVGCFAQALCKEGRWSDALVM 264

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI----------- 193
              I R+ F  D V    +I GL     F EA     +     C PNV+           
Sbjct: 265 ---IEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLAGFLK 321

Query: 194 --------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233
                               PN   + S++   C          L   M G G  P   V
Sbjct: 322 KKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVV 381

Query: 234 YNSLIRVYCCAVNWEDAKGNTSAAL--ELHEEF---------VNGNGELGVICH------ 276
           YN  I   C     E+       AL  +++EE          VN       +C       
Sbjct: 382 YNIFIGSICSG---EELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDK 438

Query: 277 --------------PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
                         PD  +Y  +I  LC+ + V+KA  LF +MKS G+IPDV  Y+ LID
Sbjct: 439 AFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILID 498

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
            +C +G I+ AR  F  +ES GC P   +Y  L+++Y K ++V +A  ++  M+  G  P
Sbjct: 499 SFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAP 558

Query: 383 DN------------------SCILEAAEL-----------FRTLHNTKFELDLTVFNCLV 413
           +                   +C + A  +           F   H      ++  +  L+
Sbjct: 559 NTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALI 618

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA------------- 460
           DGLCK+ ++  A EL   +   G EPN + Y  +I G C  G ++ A             
Sbjct: 619 DGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYL 678

Query: 461 -----YDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
                Y  L D   K R    AI++L +M +    P+ +T + + + L +   C + + L
Sbjct: 679 PTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKL 738

Query: 516 LPSFLSRN 523
           L     R 
Sbjct: 739 LSMMEKRG 746



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 165/368 (44%), Gaps = 38/368 (10%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
            P + ++ +L+  L      V+   L + +++ G  P+ +  + L++ FCK+  + +A  
Sbjct: 608 APNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQE 667

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
              R+ +  + P V T   LI  +    +   A  + ++ +   C PNV+     Y ++I
Sbjct: 668 VFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVT----YTAMI 723

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
           DGLC+ G   K   L   M+ RG  P+   Y SLI       +     G    +L+L  +
Sbjct: 724 DGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLI-------DGLGKSGKVDMSLQLFTQ 776

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
            +         C P+ ++Y  +IN  C   L+D+A  L  +MK       V  Y S++ G
Sbjct: 777 MITQG------CAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQG 830

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           +    +   +  L   +ES G +     Y  LI+S+SK  ++E+AL L+ EM+       
Sbjct: 831 FS--KKFIASLGLLEELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMM------- 881

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                   E+  +L+ T  +     +  L+  LC + +L  A+EL+ ++ R G  P +  
Sbjct: 882 --------EVSSSLNITSKD----TYTSLIQALCLASQLEKAFELYSEITRKGVVPELSA 929

Query: 444 YTVMICGL 451
           +  +I GL
Sbjct: 930 FICLIKGL 937


>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Vitis
           vinifera]
          Length = 829

 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 113/440 (25%), Positives = 188/440 (42%), Gaps = 79/440 (17%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P  VS N LM+ FCKM  V  A      +++    PDV +   L+ GLC+ G   EA   
Sbjct: 268 PSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEA--- 324

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             +F        V P+++ Y  + +G    G ++    +   M   G+ PD   Y  LI 
Sbjct: 325 -LEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILIC 383

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH----------------------- 276
            +C         GN   + +L E+ ++   +L ++ +                       
Sbjct: 384 GHC-------QMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEM 436

Query: 277 ------PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
                 PD+L+Y  +I+ LCK   V++A EL+ +M S+ I P+  V S++I G    G I
Sbjct: 437 EVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAI 496

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEA 390
            +A+  F S+       +   YN +I+ Y+K+  + EA+  Y ++I  G+ P        
Sbjct: 497 SEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISP-------- 548

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
                          +  FN L+ G CK  +L  A +L   +  +G  P  VTYT ++ G
Sbjct: 549 --------------TIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNG 594

Query: 451 LCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCH 510
            C EG +   +D+L +ME K                  +KP +IT +++ + L K+   H
Sbjct: 595 YCEEGDMHSMFDMLHEMEAKA-----------------IKPTQITYTVVVKGLCKEGRLH 637

Query: 511 ECMNLLPSFLSRNQEESKLT 530
           E + LL    +R     ++T
Sbjct: 638 ESVQLLKYMYARGLFPDQIT 657



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 166/383 (43%), Gaps = 41/383 (10%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++  LL +L         + L   +  IGL PD ++ ++L++  CK   V +A      +
Sbjct: 412 TYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEM 471

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
             K   P+      +I GL  +G  +EA   F        + +V   +I Y  +IDG  K
Sbjct: 472 CSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVT----KSDVAEEIILYNIMIDGYAK 527

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF-VNG 267
            G + +    +  +  +GI P    +NSLI  +C        KG  + A++L +   V+G
Sbjct: 528 LGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFC-------KKGKLAEAVKLLDTIKVHG 580

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
                    P  ++Y +++N  C++  +    ++  +M+++ I P  + Y+ ++ G C  
Sbjct: 581 -------LVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKE 633

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
           GR+ ++ +L   + + G  PD  +YNT+I S+ K   +++A  L+ +M+   ++P     
Sbjct: 634 GRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSP--- 690

Query: 388 LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
                                +N L++GLC    L+ A  L   L         V YT +
Sbjct: 691 -------------------VTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTI 731

Query: 448 ICGLCIEGGIEKAYDLLPDMEEK 470
           I   C +G ++ A      M E+
Sbjct: 732 IKAHCAKGDVQNALVFFHQMVER 754



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/373 (21%), Positives = 166/373 (44%), Gaps = 45/373 (12%)

Query: 95  GALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFS 154
           GA++  + Y + +  S+      +  + +  NI+++ + K+  + +A  +  +I+ K  S
Sbjct: 494 GAISEAQMYFDSVTKSD------VAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGIS 547

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
           P +VT   LI G C +GK  EA  L            ++P  + Y ++++G C++G ++ 
Sbjct: 548 PTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVH----GLVPTSVTYTTLMNGYCEEGDMHS 603

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
           +  +  +M+ + I P    Y  +++  C        +G    +++L  +++   G     
Sbjct: 604 MFDMLHEMEAKAIKPTQITYTVVVKGLC-------KEGRLHESVQL-LKYMYARG----- 650

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
             PD ++Y ++I S CK   + KA +L   M    + P  V Y+ LI+G C+ G + DA 
Sbjct: 651 LFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDAD 710

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
           +L V+++ +       +Y T+I ++     V+ AL  + +M+  G               
Sbjct: 711 RLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERG--------------- 755

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
                  FE+ +  ++ +++ LCK   +  A   F  +  +G  P+     VM+      
Sbjct: 756 -------FEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRS 808

Query: 455 GGIEKAYDLLPDM 467
           G     +++   M
Sbjct: 809 GDPNSVFEIFAMM 821



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 114/259 (44%), Gaps = 46/259 (17%)

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           +I+ LC+   +  A     +       P VV +++L+ G+C MG +D A+  F  +   G
Sbjct: 241 LIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYG 300

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL 404
            +PD  SYN L++       +EEAL    +M + GV P                      
Sbjct: 301 LLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEP---------------------- 338

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           D+  +N L +G      +  AW++ +++   G  P++VTYT++ICG C  G IE+++ L 
Sbjct: 339 DIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKL- 397

Query: 465 PDMEEKIRECLK---------------------AIELLHKMAKRYVKPDEITVSILEELL 503
              E+ + + LK                     A+ LLH+M    +KPD +T S+L   L
Sbjct: 398 --KEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGL 455

Query: 504 NKDENCHECMNLLPSFLSR 522
            K     E + L     S+
Sbjct: 456 CKRGAVEEAIELYEEMCSK 474



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 129/315 (40%), Gaps = 17/315 (5%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           + +A+  +  +I    +P + +FNSL+     K      + L + +   GL+P  V+   
Sbjct: 531 IGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTT 590

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           LMN +C+   +   F  L  +  K   P  +T   +++GLC +G+  E+  L     A  
Sbjct: 591 LMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYA-- 648

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               + P+ I Y ++I   CK   + K   L   M    + P    YN LI   C   N 
Sbjct: 649 --RGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNL 706

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           +DA       + L ++ +              ++Y +II + C    V  A   F  M  
Sbjct: 707 KDAD---RLLVTLQDQSIRLTK----------VAYTTIIKAHCAKGDVQNALVFFHQMVE 753

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           RG    +  YS++I+  C    I DA+  F  + + G  PD      ++N++ +      
Sbjct: 754 RGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRSGDPNS 813

Query: 368 ALSLYGEMISMGVRP 382
              ++  MI  G+ P
Sbjct: 814 VFEIFAMMIKCGLLP 828


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 118/456 (25%), Positives = 202/456 (44%), Gaps = 55/456 (12%)

Query: 57  LSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           LS   K+ EV+++  +  F+ M H   TP +  F++++ A        + I L  ++  +
Sbjct: 169 LSSLVKANEVKMSYQV--FDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDAIELFRKMEKV 226

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ P+ V+ N +++  CK   + +AF    ++ ++   P +VT G LI GL    +F EA
Sbjct: 227 GVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEA 286

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
           + +  +           PN + Y ++IDG C+ G ++    +  DM   GI P++   NS
Sbjct: 287 NCILKEM----SDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNS 342

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV-----ICH--------------- 276
           LI+ YC +   E A+        L EE + G G +       + H               
Sbjct: 343 LIQGYCKSNQMEHAE-------HLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFI 395

Query: 277 ---------PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
                    P+      +++ LC++    +A EL+  +  +G   + V  ++LI G C  
Sbjct: 396 MEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEA 455

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC- 386
           G  ++A KL   +   G + D+ SYNTLI +  K  KVEE   L  EM+  G++PD    
Sbjct: 456 GSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTY 515

Query: 387 ------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
                       I EA  L+          D   +  ++DG CK+ R+    +LF+++  
Sbjct: 516 NMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVT 575

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
              E N V Y  +I   C  G + +A+ L  DM  +
Sbjct: 576 MKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSR 611



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 123/510 (24%), Positives = 219/510 (42%), Gaps = 75/510 (14%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L++A  F   M   +  P + ++  L+  L   + +    C+ + ++  G  P+ V  N 
Sbjct: 248 LDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNT 307

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA----------- 176
           L++ +C++  +S A      ++    SP+ VT   LI+G C   +   A           
Sbjct: 308 LIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGG 367

Query: 177 ----SGLFTKFVA---FDCR-------------PNVIPNVICYASIIDGLCKDGFVNKVR 216
                G FT  +      CR              N  PN      ++ GLC++G  ++  
Sbjct: 368 GVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAI 427

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            L+  +  +G   +    N+LI   C A       G+   A +L +E +    E G++  
Sbjct: 428 ELWYRLLEKGFAANTVTSNALIHGLCEA-------GSKEEAAKLLKEML----ERGLVL- 475

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
            D +SY ++I + CK+  V++  +L  +M  RGI PD+  Y+ L+ G C MG+I++A  L
Sbjct: 476 -DSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGL 534

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP-------------D 383
           +   +  G  PD  +Y  +I+ Y K  +VEE   L+ EM++M +               +
Sbjct: 535 WHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCE 594

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
           N  + EA  L   + +         ++ L+ GL     + SA +L  ++ + G  PNVV 
Sbjct: 595 NGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVC 654

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMA 485
           YT +I G C  G + K   +L +M                    K+     A +LL++MA
Sbjct: 655 YTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMA 714

Query: 486 KRYVKPDEITVSILEELLNKDENCHECMNL 515
           ++ + PD +T + L     K+    E + +
Sbjct: 715 QKGIVPDAVTYNALTNGFCKEGKMEEALKV 744



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 152/336 (45%), Gaps = 43/336 (12%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL+ D +S N L+   CK   V + F     ++R+   PD+ T   L+ GLC  GK  EA
Sbjct: 472 GLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEA 531

Query: 177 SGLFTKFVAFDCRPNV-IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
            GL+      +C+ N   P+   Y  +IDG CK   V +   LF +M    I  +A VY 
Sbjct: 532 GGLW-----HECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYG 586

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDV-LSYCSIINSLCKDVL 294
           +LIR YC         GN   A  L ++  +     G+   P    +Y S+I+ L    L
Sbjct: 587 TLIRAYC-------ENGNMREAFRLRDDMRS----RGI---PQTSATYSSLIHGLSNIGL 632

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           VD A +L  +M+  G+ P+VV Y++LI GYC +G++     +   +      P+  +Y  
Sbjct: 633 VDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTI 692

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           +IN + K+  ++ A  L  EM   G+ PD                         +N L +
Sbjct: 693 MINGHCKLGNMKAAAKLLNEMAQKGIVPD----------------------AVTYNALTN 730

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
           G CK  ++  A ++   +   G   + +TYT +I G
Sbjct: 731 GFCKEGKMEEALKVCDLMSTGGISLDDITYTTLIDG 766



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 136/331 (41%), Gaps = 37/331 (11%)

Query: 48  EEKTKLLKYLSENS----------------KSGEVELNDALCFFNYMIHMQPTPFMPSFN 91
           EE  KLLK + E                  K G+VE  +       M+     P M ++N
Sbjct: 459 EEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVE--EGFKLKEEMVRRGIQPDMYTYN 516

Query: 92  SLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRK 151
            LL  L           L       G  PD  +  I+++ +CK   V +       ++  
Sbjct: 517 MLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTM 576

Query: 152 VFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNV-ICYASIIDGLCKDG 210
               + V  G LIR  C  G   EA  L       D R   IP     Y+S+I GL   G
Sbjct: 577 KIEQNAVVYGTLIRAYCENGNMREAFRLRD-----DMRSRGIPQTSATYSSLIHGLSNIG 631

Query: 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGE 270
            V+    L  +M+  G+ P+   Y +LI  YC         G       + +E    N  
Sbjct: 632 LVDSANQLLDEMRKEGLSPNVVCYTALIGGYC-------KLGQMHKVDSILQEMSINN-- 682

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
                HP+ ++Y  +IN  CK   +  A +L  +M  +GI+PD V Y++L +G+C  G++
Sbjct: 683 ----VHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKM 738

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           ++A K+   + + G   D  +Y TLI+ + K
Sbjct: 739 EEALKVCDLMSTGGISLDDITYTTLIDGWHK 769



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 82/181 (45%), Gaps = 13/181 (7%)

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           ELF  + ++G+ P +   + L+        +  + ++F  +   G  PD   ++T++N++
Sbjct: 148 ELFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAF 207

Query: 360 SKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDL 406
               +V++A+ L+ +M  +GV P+             N  + EA +    +   + +  L
Sbjct: 208 CTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSL 267

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             +  L++GL K  R   A  + K++   G  PN V Y  +I G C  G I  A  +  D
Sbjct: 268 VTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDD 327

Query: 467 M 467
           M
Sbjct: 328 M 328


>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
 gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
          Length = 641

 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 106/406 (26%), Positives = 194/406 (47%), Gaps = 43/406 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++DA+  F  M   +  P + ++ +L+  L         + L + +   G  P  V+ N+
Sbjct: 185 VDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNV 244

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N  CK   ++     +  +  K  +P+ VT   LI GLC++GK  +A  L  + V+  
Sbjct: 245 LINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSK 304

Query: 188 CRPNVIPNVICYASIIDGLCKDG-FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           C    +PNV+ Y +II+GL K G  ++  RVL L M+ RG + + +VY++LI        
Sbjct: 305 C----VPNVVTYGTIINGLVKQGRALDGARVLAL-MEERGYHVNEYVYSALISGLF---- 355

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
               +G +  A++L +E      EL  I       Y ++I+ LC+D   D+A E+  +M 
Sbjct: 356 ---KEGKSQEAMQLFKEMTVKECELNTIV------YSAVIDGLCRDGKPDEALEVLSEMT 406

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           +    P+   YSSL+ G+   G    A +++  +       +   Y+ LI+   K  KV+
Sbjct: 407 NNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVLIHGLCKDGKVK 466

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           EA+ ++ +M+  G +P                      D+  +  +++GL  +  +  A 
Sbjct: 467 EAMMVWAQMLGKGCKP----------------------DVVAYGSMINGLSNAGLVEDAL 504

Query: 427 ELFKKLPRYGP--EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           +L+ ++    P  +P+VVTY +++  LC +  I +A DLL  M ++
Sbjct: 505 QLYNEMLCQEPDSQPDVVTYNILLNALCKQSSISRAIDLLNSMLDR 550



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 171/383 (44%), Gaps = 52/383 (13%)

Query: 175 EASGLFTKFV-AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLF---LDMKGRGIYPD 230
           +A GLF +    F+C+  V      + S+++ + ++G   +    +   +  KG  I P+
Sbjct: 113 KAVGLFDRMAYEFECKRTVKS----FNSVLNVIIQEGLFYRALEFYNHVIGAKGVNISPN 168

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
              +N +I+  C         G    A+++  +           C PDV +YC++++ LC
Sbjct: 169 VLTFNLVIKTMC-------KVGLVDDAVQMFRDMPVSK------CQPDVYTYCTLMDGLC 215

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K   +D+A  L  +M+  G  P  V ++ LI+G C  G +    KL  ++  +GC P+  
Sbjct: 216 KADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEV 275

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTL 397
           +YNTLI+      K+E+A+SL   M+S    P+                 L+ A +   +
Sbjct: 276 TYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALM 335

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
               + ++  V++ L+ GL K  + + A +LFK++     E N + Y+ +I GLC +G  
Sbjct: 336 EERGYHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKP 395

Query: 458 EKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           ++A ++L +M                    +     KAIE+   MAK     +E+  S+L
Sbjct: 396 DEALEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVL 455

Query: 500 EELLNKDENCHECMNLLPSFLSR 522
              L KD    E M +    L +
Sbjct: 456 IHGLCKDGKVKEAMMVWAQMLGK 478



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 17/170 (10%)

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
            + SLID Y  +G      K+   +  E  +     +  +  +Y K    E+A+ L+  M
Sbjct: 62  TFYSLIDNYANLGDFKSLEKVLDRMRCEKRVVVEKCFVVIFKAYGKAHLPEKAVGLFDRM 121

Query: 376 I-----SMGVRPDNS---CILEAAELFRTLH---------NTKFELDLTVFNCLVDGLCK 418
                    V+  NS    I++    +R L                ++  FN ++  +CK
Sbjct: 122 AYEFECKRTVKSFNSVLNVIIQEGLFYRALEFYNHVIGAKGVNISPNVLTFNLVIKTMCK 181

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
              +  A ++F+ +P    +P+V TY  ++ GLC    I++A  LL +M+
Sbjct: 182 VGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEMQ 231


>gi|12321310|gb|AAG50731.1|AC079041_24 PPR-repeat protein, putative [Arabidopsis thaliana]
          Length = 690

 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 120/438 (27%), Positives = 203/438 (46%), Gaps = 51/438 (11%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK--MIGVSD 140
           P P + +F +L+     +        L + +   G+ PD ++ + L++ + K  M+G+  
Sbjct: 282 PAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGH 341

Query: 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200
              +  + L K    DVV     I      G    AS ++ + +   C+  + PNV+ Y 
Sbjct: 342 KLFS--QALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRML---CQ-GISPNVVTYT 395

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL 260
            +I GLC+DG + +   ++  +  RG+ P    Y+SLI  +C         GN  +   L
Sbjct: 396 ILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKC-------GNLRSGFAL 448

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
           +E+ +    ++G    PDV+ Y  +++ L K  L+  A    + M  + I  +VVV++SL
Sbjct: 449 YEDMI----KMGY--PPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSL 502

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           IDG+C + R D+A K+F  +   G  PD +++ T++       ++EEAL L+  M  MG+
Sbjct: 503 IDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGL 562

Query: 381 RPD--NSCILEAA-----------ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
            PD    C L  A           +LF  +   K   D+ V N ++  L K  R+  A +
Sbjct: 563 EPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASK 622

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKR 487
            F  L     EP++VTY  MICG C    +++A        E+I E LK           
Sbjct: 623 FFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEA--------ERIFELLKVTPF------- 667

Query: 488 YVKPDEITVSILEELLNK 505
              P+ +T++IL  +L K
Sbjct: 668 --GPNTVTLTILIHVLCK 683



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 133/315 (42%), Gaps = 73/315 (23%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           +R+   G+ P+ V+  IL+   C+   + +AF   G+IL++   P +VT   LI G C  
Sbjct: 380 KRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKC 439

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G       L+   +    +    P+V+ Y  ++DGL K G +       + M G+ I  +
Sbjct: 440 GNLRSGFALYEDMI----KMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLN 495

Query: 231 AFVYNSLIRVYCCAVNWEDA----------------------------KGNTSAALELHE 262
             V+NSLI  +C    +++A                            +G    AL L  
Sbjct: 496 VVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFF 555

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCK-----------DVL----------------- 294
                  ++G+   PD L+YC++I++ CK           D++                 
Sbjct: 556 RMF----KMGL--EPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIH 609

Query: 295 -------VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
                  ++ A + F ++    + PD+V Y+++I GYC + R+D+A ++F  ++     P
Sbjct: 610 LLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGP 669

Query: 348 DTSSYNTLINSYSKI 362
           +T +   LI+   KI
Sbjct: 670 NTVTLTILIHVLCKI 684



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 94/218 (43%), Gaps = 31/218 (14%)

Query: 281 SYCSIINSLCKDVLVDKAKELFLDM--------------KSRGIIPDVVVYSSLIDGYCL 326
           S+ +I + L ++ + D A ++F +M              + R +  DV  +  L++  C 
Sbjct: 101 SFYTIAHVLIRNGMFDVADKVFDEMITNRGKDFNVLGSIRDRSLDADVCKF--LMECCCR 158

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC 386
            G +D A ++FV     G +    S   ++NS    ++V+     + ++   G+ P    
Sbjct: 159 YGMVDKALEIFVYSTQLGVVIPQDSVYRMLNSLIGSDRVDLIADHFDKLCRGGIEPSGVS 218

Query: 387 --------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
                         + +A +  R +    F + +   N ++ GL    ++  A  L   +
Sbjct: 219 AHGFVLDALFCKGEVTKALDFHRLVMERGFRVGIVSCNKVLKGLSVD-QIEVASRLLSLV 277

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
              GP PNVVT+  +I G C  G +++A+DL   ME++
Sbjct: 278 LDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQR 315


>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
 gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
          Length = 670

 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 113/441 (25%), Positives = 203/441 (46%), Gaps = 46/441 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++DA+  F  M   +  P + ++ +L+  L         + L + +   G  P  V+ N+
Sbjct: 215 VDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNV 274

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N  CK   +S A   +  +  K   P+ VT   LI GLC++GK  +A  L  + V+  
Sbjct: 275 LINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSK 334

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C    +PNV+ Y +II+GL K G       +   M+ RG   + +VY++LI         
Sbjct: 335 C----VPNVVTYGTIINGLVKQGRALDGACVLALMEERGYCVNEYVYSTLISGLF----- 385

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
              +G +  A+ L +E      EL  I       Y ++I+ LC+D   D A E+  +M +
Sbjct: 386 --KEGKSQEAMHLFKEMTVKGYELNTIV------YSAVIDGLCRDGKPDDAVEVLSEMTN 437

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           +G  P+    SSL+ G+   G    A +++  +       +   Y+ LI+   K  KV+E
Sbjct: 438 KGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKE 497

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           A+ ++ +M+  G +P                      D+  ++ +++GL  +  +  A +
Sbjct: 498 AMMVWTQMLGKGCKP----------------------DVVAYSSMINGLSIAGLVEDAMQ 535

Query: 428 LFKKLPRYGP--EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC---LKAIELLH 482
           L+ ++   GP  +P+VVTY +++  LC +  I +A DLL  M +  R C   L    +  
Sbjct: 536 LYNEMLCQGPDSQPDVVTYNILLNTLCKQSSISRAIDLLNSMLD--RGCDPDLVTCTIFL 593

Query: 483 KMAKRYVKPDEITVSILEELL 503
           +M +  + P +     L+EL+
Sbjct: 594 RMLREKLDPPQDGREFLDELV 614



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 121/477 (25%), Positives = 213/477 (44%), Gaps = 57/477 (11%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERL---NTIGLLPDFVSLNILMNCFCKMIGVSDAFVAL 145
           SFNS+L  +  +  +   +     +     + + P+ ++ N+++   CK+  V DA    
Sbjct: 163 SFNSVLNVIIQEGLFHRALEFYNHVIGAKGVSISPNVLTFNLVIKAMCKVGLVDDAIQVF 222

Query: 146 GRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDG 205
             +  +   PDV T   L+ GLC   +  EA  L  +     C     P+ + +  +I+G
Sbjct: 223 RDMTIRKCEPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGC----FPSPVTFNVLING 278

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
           LCK G +++   L  +M  +G  P+   YN+LI   C        KG    A+ L +  V
Sbjct: 279 LCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLC-------LKGKLEKAISLLDRMV 331

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
           +        C P+V++Y +IIN L K         +   M+ RG   +  VYS+LI G  
Sbjct: 332 SSK------CVPNVVTYGTIINGLVKQGRALDGACVLALMEERGYCVNEYVYSTLISGLF 385

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN- 384
             G+  +A  LF  +  +G   +T  Y+ +I+   +  K ++A+ +  EM + G  P+  
Sbjct: 386 KEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAY 445

Query: 385 --SCILE----------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
             S +++          A E+++ +    F  +   ++ L+ GLCK  +++ A  ++ ++
Sbjct: 446 TCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWTQM 505

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL-------PDMEE-------------KIR 472
              G +P+VV Y+ MI GL I G +E A  L        PD +              K  
Sbjct: 506 LGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQGPDSQPDVVTYNILLNTLCKQS 565

Query: 473 ECLKAIELLHKMAKRYVKPDEITVSI----LEELLNKDENCHECMNLLPSFLSRNQE 525
              +AI+LL+ M  R   PD +T +I    L E L+  ++  E ++ L   L + Q 
Sbjct: 566 SISRAIDLLNSMLDRGCDPDLVTCTIFLRMLREKLDPPQDGREFLDELVVRLLKRQR 622


>gi|302763305|ref|XP_002965074.1| hypothetical protein SELMODRAFT_83127 [Selaginella moellendorffii]
 gi|300167307|gb|EFJ33912.1| hypothetical protein SELMODRAFT_83127 [Selaginella moellendorffii]
          Length = 484

 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 170/364 (46%), Gaps = 34/364 (9%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P   S  I++ CFC +     A+  LG +      PDV     +++G C  G+   A   
Sbjct: 77  PSLYSFTIIIQCFCNVRNPGRAWRYLGYMRSLGIPPDVTAYNVVLKGYCDLGRVGRALIK 136

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F K +   C+PNV      Y ++I+GLCK G ++    LF  +    + PD F Y++L+ 
Sbjct: 137 FGK-MGKTCKPNVAT----YNTVINGLCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVH 191

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C A   E       AA+++++  +  N +       D  +Y ++ +  CK+  VD+A 
Sbjct: 192 GLCQAERLE-------AAIKVYDMMLEANYD------GDAGAYNAMADGFCKERRVDEAL 238

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYC-LMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
           E+   M  R   P VV Y+ +I+G C    RI++A +LF  +    C P+  +Y T+I  
Sbjct: 239 EVLKTMIQRRCKPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILG 298

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELD 405
            SKI +V+  L L+  M   G+ PD                + EA  + +         D
Sbjct: 299 LSKIYEVQRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPD 358

Query: 406 LTVFNCLVDGLCKSW--RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
           + ++  L+ G C++   R+  A  LF+ +      PNV+TY +++ GLC  G  ++AY +
Sbjct: 359 VYMYTTLISGYCRARKPRVDEALLLFQNMKDRRVWPNVITYNIVLRGLCKTGRFDEAYQI 418

Query: 464 LPDM 467
             +M
Sbjct: 419 FQEM 422



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 111/449 (24%), Positives = 204/449 (45%), Gaps = 61/449 (13%)

Query: 51  TKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGAL-----AGKKY-YV 104
           T+LL +L    ++ E     A+ FF   +     P + SF  ++         G+ + Y+
Sbjct: 48  TRLLHHLVRARRTRE-----AVRFFKRELCAHCRPSLYSFTIIIQCFCNVRNPGRAWRYL 102

Query: 105 NFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLI 164
            +      + ++G+ PD  + N+++  +C +  V  A +  G+ + K   P+V T   +I
Sbjct: 103 GY------MRSLGIPPDVTAYNVVLKGYCDLGRVGRALIKFGK-MGKTCKPNVATYNTVI 155

Query: 165 RGLCMQGKFTEASGLFTKFVAFDCRPN--VIPNVICYASIIDGLCKDGFVN---KVRVLF 219
            GLC  GK   A  LFT+       P+  V P+   Y++++ GLC+   +    KV  + 
Sbjct: 156 NGLCKFGKIDWAVHLFTRL------PHDLVDPDGFTYSTLVHGLCQAERLEAAIKVYDMM 209

Query: 220 LDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDV 279
           L+    G   DA  YN++   +C        +     ALE+ +  +         C P V
Sbjct: 210 LEANYDG---DAGAYNAMADGFC-------KERRVDEALEVLKTMIQRR------CKPSV 253

Query: 280 LSYCSIINSLCK-DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
           ++Y  IIN +C+    +++A  LF  M      P+ V Y ++I G   +  +    +LF 
Sbjct: 254 VTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGLSKIYEVQRCLELFK 313

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALS---------------LYGEMISMGVRPD 383
            +   G  PD  +Y++LI ++ K+ K++EA S               +Y  +IS   R  
Sbjct: 314 GMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPDVYMYTTLISGYCRAR 373

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
              + EA  LF+ + + +   ++  +N ++ GLCK+ R   A+++F+++ +    PN +T
Sbjct: 374 KPRVDEALLLFQNMKDRRVWPNVITYNIVLRGLCKTGRFDEAYQIFQEMFKVKCSPNRMT 433

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEKIR 472
           + VM  G+      +K   +  DM  K R
Sbjct: 434 FKVMTMGMIHCRKTDKFERIFMDMVYKGR 462



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 137/303 (45%), Gaps = 30/303 (9%)

Query: 104 VNFICLSERLNTIGLLPDFV----------SLNILMNCFCKMIGVSDAFVALGRILRKVF 153
           V+ +C +ERL     + D +          + N + + FCK   V +A   L  ++++  
Sbjct: 190 VHGLCQAERLEAAIKVYDMMLEANYDGDAGAYNAMADGFCKERRVDEALEVLKTMIQRRC 249

Query: 154 SPDVVTLGCLIRGLCM-QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFV 212
            P VVT  C+I G+C  + +  EA  LF + V  DC     PN + Y ++I GL K   V
Sbjct: 250 KPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDC----PPNAVTYGTMILGLSKIYEV 305

Query: 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
            +   LF  M   G+ PD + Y+SLI  +      ++AK     A   H           
Sbjct: 306 QRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNH----------- 354

Query: 273 VICHPDVLSYCSIINSLCK--DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
               PDV  Y ++I+  C+     VD+A  LF +MK R + P+V+ Y+ ++ G C  GR 
Sbjct: 355 --VGPDVYMYTTLISGYCRARKPRVDEALLLFQNMKDRRVWPNVITYNIVLRGLCKTGRF 412

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEA 390
           D+A ++F  +    C P+  ++  +        K ++   ++ +M+  G       ILE 
Sbjct: 413 DEAYQIFQEMFKVKCSPNRMTFKVMTMGMIHCRKTDKFERIFMDMVYKGRWQGEGPILEQ 472

Query: 391 AEL 393
             L
Sbjct: 473 HGL 475



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 154/367 (41%), Gaps = 61/367 (16%)

Query: 153 FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFV 212
           +  DV     L+  L    +  EA   F + +   CRP++    I    II   C     
Sbjct: 40  YRHDVYCYTRLLHHLVRARRTREAVRFFKRELCAHCRPSLYSFTI----IIQCFCNVRNP 95

Query: 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
            +       M+  GI PD   YN +++ YC      D      A ++         G++G
Sbjct: 96  GRAWRYLGYMRSLGIPPDVTAYNVVLKGYC------DLGRVGRALIKF--------GKMG 141

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
             C P+V +Y ++IN LCK   +D A  LF  +    + PD   YS+L+ G C   R++ 
Sbjct: 142 KTCKPNVATYNTVINGLCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAERLEA 201

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392
           A K++  +       D  +YN + + + K  +V+EAL +   MI    +P          
Sbjct: 202 AIKVYDMMLEANYDGDAGAYNAMADGFCKERRVDEALEVLKTMIQRRCKP---------- 251

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCK-SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
                        +  +NC+++G+C+   R+  A+ LF+++      PN VTY  MI GL
Sbjct: 252 ------------SVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGL 299

Query: 452 --------CIE--GGIEKAYDLLPDMEE---------KIRECLKAIELLHKMAKRYVKPD 492
                   C+E   G+ KA  L PD            K+R+  +A  +L   A+ +V PD
Sbjct: 300 SKIYEVQRCLELFKGMSKA-GLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPD 358

Query: 493 EITVSIL 499
               + L
Sbjct: 359 VYMYTTL 365



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 95/226 (42%), Gaps = 32/226 (14%)

Query: 302 FLDMKSR--GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           F D  S+  G   DV  Y+ L+       R  +A + F       C P   S+  +I  +
Sbjct: 30  FFDWSSKQEGYRHDVYCYTRLLHHLVRARRTREAVRFFKRELCAHCRPSLYSFTIIIQCF 89

Query: 360 SKIEKVEEALSLYGEMISMGVRPD----NSCILEAAELFRTLHN-TKF-------ELDLT 407
             +     A    G M S+G+ PD    N  +    +L R      KF       + ++ 
Sbjct: 90  CNVRNPGRAWRYLGYMRSLGIPPDVTAYNVVLKGYCDLGRVGRALIKFGKMGKTCKPNVA 149

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC----IEGGIE----- 458
            +N +++GLCK  ++  A  LF +LP    +P+  TY+ ++ GLC    +E  I+     
Sbjct: 150 TYNTVINGLCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAERLEAAIKVYDMM 209

Query: 459 ---------KAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEIT 495
                     AY+ + D   K R   +A+E+L  M +R  KP  +T
Sbjct: 210 LEANYDGDAGAYNAMADGFCKERRVDEALEVLKTMIQRRCKPSVVT 255


>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
 gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g31400, chloroplastic; Flags: Precursor
 gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
 gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
          Length = 918

 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 101/342 (29%), Positives = 161/342 (47%), Gaps = 35/342 (10%)

Query: 147 RILRKVFSPD----VVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202
           RI    F+      V     LI      G   EA  +F     +  RPN++     Y ++
Sbjct: 254 RIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLV----TYNAV 309

Query: 203 IDGLCKDGF-VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261
           ID   K G    +V   F +M+  G+ PD   +NSL+ V      WE       AA  L 
Sbjct: 310 IDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWE-------AARNLF 362

Query: 262 EEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
           +E  N   E       DV SY ++++++CK   +D A E+   M  + I+P+VV YS++I
Sbjct: 363 DEMTNRRIE------QDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVI 416

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
           DG+   GR D+A  LF  +   G   D  SYNTL++ Y+K+ + EEAL +  EM S+G++
Sbjct: 417 DGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIK 476

Query: 382 PD----NSCIL---------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
            D    N+ +          E  ++F  +       +L  ++ L+DG  K    + A E+
Sbjct: 477 KDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEI 536

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           F++    G   +VV Y+ +I  LC  G +  A  L+ +M ++
Sbjct: 537 FREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKE 578



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 109/449 (24%), Positives = 198/449 (44%), Gaps = 48/449 (10%)

Query: 57  LSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALA-GKKYYVNFICLSERLNT 115
           +S   +SG  E  +A+  FN M      P + ++N+++ A   G   +       + +  
Sbjct: 275 ISAYGRSGLHE--EAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQR 332

Query: 116 IGLLPDFVSLNILMNCFCKMIGVSDAFVAL-GRILRKVFSPDVVTLGCLIRGLCMQGKFT 174
            G+ PD ++ N L+   C   G+ +A   L   +  +    DV +   L+  +C  G+  
Sbjct: 333 NGVQPDRITFNSLL-AVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMD 391

Query: 175 EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVY 234
            A  +  +         ++PNV+ Y+++IDG  K G  ++   LF +M+  GI  D   Y
Sbjct: 392 LAFEILAQMPV----KRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSY 447

Query: 235 NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294
           N+L+ +Y          G +  AL++  E  +      V    DV++Y +++    K   
Sbjct: 448 NTLLSIYTKV-------GRSEEALDILREMAS------VGIKKDVVTYNALLGGYGKQGK 494

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
            D+ K++F +MK   ++P+++ YS+LIDGY   G   +A ++F   +S G   D   Y+ 
Sbjct: 495 YDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSA 554

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           LI++  K   V  A+SL  EM   G+ P                      ++  +N ++D
Sbjct: 555 LIDALCKNGLVGSAVSLIDEMTKEGISP----------------------NVVTYNSIID 592

Query: 415 GLCKSWRL-RSA-WELFKKLPRYGPEPNVVTYTV--MICGLCIEGGIEKAYDLLPDMEEK 470
              +S  + RSA +     LP      + +T T    +  L  +   E       D EE 
Sbjct: 593 AFGRSATMDRSADYSNGGSLPFSSSALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEG 652

Query: 471 IRECLKAIELLHKMAKRYVKPDEITVSIL 499
           ++E    +E+  KM +  +KP+ +T S +
Sbjct: 653 MQELSCILEVFRKMHQLEIKPNVVTFSAI 681



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/249 (21%), Positives = 105/249 (42%), Gaps = 67/249 (26%)

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           S++I      G++  A+++F +  + G      +++ LI++Y +    EEA+S++  M  
Sbjct: 237 SAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKE 296

Query: 378 MGVRPD--------NSC----------------------------------------ILE 389
            G+RP+        ++C                                        + E
Sbjct: 297 YGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWE 356

Query: 390 AAE-LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
           AA  LF  + N + E D+  +N L+D +CK  ++  A+E+  ++P     PNVV+Y+ +I
Sbjct: 357 AARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVI 416

Query: 449 CGLCIEGGIEKAYDLLPDME------------------EKIRECLKAIELLHKMAKRYVK 490
            G    G  ++A +L  +M                    K+    +A+++L +MA   +K
Sbjct: 417 DGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIK 476

Query: 491 PDEITVSIL 499
            D +T + L
Sbjct: 477 KDVVTYNAL 485


>gi|302758668|ref|XP_002962757.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
 gi|300169618|gb|EFJ36220.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
          Length = 439

 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 178/389 (45%), Gaps = 55/389 (14%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
            L+P+  +   ++ C+CKM  +  A   L        S DV+ +  + RG C   +  EA
Sbjct: 101 ALVPEATTYTAIIKCYCKMDRLDQARQLLEE--SSCCSSDVIAITSVARGFCKAQRVDEA 158

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L    V    + +  P+++ +  II G CK G V +   +   +   G  P+A  Y +
Sbjct: 159 YQLLLDMVE---KKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTT 215

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI  +C         GN S AL+L +   + +        P+V+++ ++I+ LCK   ++
Sbjct: 216 LIDGFC-------KSGNLSEALQLFKVLSSRDHH----AEPNVVTFNALISGLCKADRLE 264

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A EL   MK+R +  D   Y++L+DG C  GR  +  ++F  +  EGC P   +Y TL+
Sbjct: 265 HAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLV 324

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           +++ K   +++A  +   M++ G+ P                      D+T +  L++GL
Sbjct: 325 HAHCKAGSLQDAQQVIRSMVAKGIPP----------------------DVTTYTVLLEGL 362

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLK 476
            ++ ++R+A E F+K+ R    P  V Y+ ++ G C    ++                 +
Sbjct: 363 FENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAALVD-----------------E 405

Query: 477 AIELLHKMAKRYVKPDEITVSILEELLNK 505
           A++   +M  R + PD  T  +L E+L K
Sbjct: 406 AVKYYVEMLDRRLAPDPATCKLLVEMLCK 434



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 174/368 (47%), Gaps = 39/368 (10%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+  + ++L+   CK   + +A     ++L +   P++  +  L+  LC  G   +A  +
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTMDQAMAI 60

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM-KGRGIYPDAFVYNSLI 238
           F       C P+VI   I    +I+G C+   ++K   LF +M K   + P+A  Y ++I
Sbjct: 61  FR---GIQCSPSVITLNI----LINGFCELQLLDKALELFHEMEKNFALVPEATTYTAII 113

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
           + YC     + A+       +L EE           C  DV++  S+    CK   VD+A
Sbjct: 114 KCYCKMDRLDQAR-------QLLEE--------SSCCSSDVIAITSVARGFCKAQRVDEA 158

Query: 299 KELFLDM-KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
            +L LDM + +   PD+V ++ +I G+C  GR+ +A ++  ++ S GC+P+  +Y TLI+
Sbjct: 159 YQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLID 218

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCI--------------LEAA-ELFRTLHNTKF 402
            + K   + EAL L+  + S     + + +              LE A EL + +     
Sbjct: 219 GFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDL 278

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
             D   +  L+DGLCK  R      +F+++ R G  P+VVTYT ++   C  G ++ A  
Sbjct: 279 RADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQ 338

Query: 463 LLPDMEEK 470
           ++  M  K
Sbjct: 339 VIRSMVAK 346



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 110/250 (44%), Gaps = 38/250 (15%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFS-------PDVVTLGCL 163
           E L ++G +P+ V+   L++ FCK   +S+A       L KV S       P+VVT   L
Sbjct: 199 ETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQ-----LFKVLSSRDHHAEPNVVTFNAL 253

Query: 164 IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
           I GLC   +   A  L  +  A D R +       Y +++DGLCK G  ++V  +F +M 
Sbjct: 254 ISGLCKADRLEHAFELVKQMKARDLRADTFT----YTTLMDGLCKQGRTSEVSRVFEEML 309

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAK-------------GNTSAALELHEEFVNGNGE 270
             G  P    Y +L+  +C A + +DA+               T+  + L   F NG   
Sbjct: 310 REGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVR 369

Query: 271 LGV---------ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
                        C P  + Y +++   CK  LVD+A + +++M  R + PD      L+
Sbjct: 370 TATEFFEKILRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLV 429

Query: 322 DGYCLMGRID 331
           +  C  GR D
Sbjct: 430 EMLCKRGRTD 439



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 103/247 (41%), Gaps = 38/247 (15%)

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           P+   +S LI G C  GR+ +A + +  +    C+P+    N L+ S  +   +++A+++
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTMDQAMAI 60

Query: 372 YG------EMISMGVRPDNSCILE----AAELFRTLH-NTKFELDLTVFNCLVDGLCKSW 420
           +        +I++ +  +  C L+    A ELF  +  N     + T +  ++   CK  
Sbjct: 61  FRGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMD 120

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK---------- 470
           RL  A +L ++        +V+  T +  G C    +++AY LL DM EK          
Sbjct: 121 RLDQARQLLEE--SSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAW 178

Query: 471 ------------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPS 518
                       +RE   A E+L  +      P+ +T + L +   K  N  E + L   
Sbjct: 179 NVIIHGFCKAGRVRE---AYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKV 235

Query: 519 FLSRNQE 525
             SR+  
Sbjct: 236 LSSRDHH 242


>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
 gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
          Length = 631

 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 178/398 (44%), Gaps = 31/398 (7%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P   SF++L+  L       + + + + +   GL  D    N L++C C++  +  A   
Sbjct: 159 PNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRL 218

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           L  +     + D  T G L+   C  G+  E +     F+          + + Y  II 
Sbjct: 219 LHHMTAHACARDAFTYGILVNAHCRAGQMHEVA----SFMELARHDGCALSAVNYNFIIQ 274

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           G  + G + +   LF     +   PD F YN LI + C +   E+       AL L +E 
Sbjct: 275 GFIRCGRLAEATQLFESTMTKESVPDVFTYNLLIAL-CKSKQLEE-------ALTLFQEA 326

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
             G    GV+   DV +Y  ++++  K     KA E+F +M+  G +PD VVY+ LI   
Sbjct: 327 EQG----GVVL--DVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCL 380

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD- 383
              G++D+A +L   +  +G +PD  +YN +I+  S   + E+A S +G M      PD 
Sbjct: 381 GKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDV 440

Query: 384 ---NSCI---------LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
              N+ +          EA +LF  +   K   DLT F  L+D L K+ R+  A E   +
Sbjct: 441 VTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSAR 500

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           L + G  PN   Y  +I G C  G ++K Y+L  DM E
Sbjct: 501 LVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIE 538



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 165/351 (47%), Gaps = 43/351 (12%)

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           V+ N ++  F +   +++A       + K   PDV T   LI  LC   +  EA  LF +
Sbjct: 267 VNYNFIIQGFIRCGRLAEATQLFESTMTKESVPDVFTYNLLI-ALCKSKQLEEALTLFQE 325

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
                 +  V+ +V  Y+ ++D   K G   K   +F +M+  G  PD  VYN LI    
Sbjct: 326 AE----QGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCL- 380

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
                   +G    ALEL E+ +N  G +     PD  +Y  +I+ L      +KA   F
Sbjct: 381 ------GKQGKVDEALELLED-MNRKGIM-----PDCRTYNIVIDVLSSCGRYEKAYSFF 428

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
             MK R   PDVV Y++L++G   + R D+A  LF  +++  C+PD +++ TLI++ +K 
Sbjct: 429 GMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKA 488

Query: 363 EKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRL 422
            ++E+AL     ++ MG  P++                       ++N L+ G C+S ++
Sbjct: 489 GRMEDALEQSARLVKMGHAPNSY----------------------IYNALISGFCRSGQV 526

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
              +ELF+ +      P+ +TYT+++ G    G    A +LL +M   +RE
Sbjct: 527 DKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEM---VRE 574



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 124/271 (45%), Gaps = 17/271 (6%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +   G +PD V  N+L++C  K   V +A   L  + RK   PD  T   +I  L   G+
Sbjct: 361 MQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGR 420

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
           + +A   F        R    P+V+ Y ++++GL K    ++   LF +M+     PD  
Sbjct: 421 YEKAYSFFGMMK----RRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLT 476

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            + +LI     A   EDA   ++  +++                P+   Y ++I+  C+ 
Sbjct: 477 TFGTLIDTLAKAGRMEDALEQSARLVKMGHA-------------PNSYIYNALISGFCRS 523

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             VDK  ELF DM      PD + Y+ L+ G+   G    A +L   +  EG  P  ++Y
Sbjct: 524 GQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATY 583

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           N LI S S   +VE+A +L+ EMI+ G  PD
Sbjct: 584 NVLIRSLSMAGQVEDAYTLFKEMIAKGFNPD 614



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 157/381 (41%), Gaps = 40/381 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            L +A   F   +  +  P + ++N LL AL   K     + L +     G++ D  + +
Sbjct: 281 RLAEATQLFESTMTKESVPDVFTYN-LLIALCKSKQLEEALTLFQEAEQGGVVLDVFTYS 339

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            LM+ F K    + A      + +    PD V    LI  L  QGK  EA  L       
Sbjct: 340 YLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMN-- 397

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             R  ++P+   Y  +ID L   G   K    F  MK R   PD   YN+L+       N
Sbjct: 398 --RKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLL-------N 448

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                  T  A +L +E           C PD+ ++ ++I++L K   ++ A E    + 
Sbjct: 449 GLKKLRRTDEACDLFDEMQANK------CMPDLTTFGTLIDTLAKAGRMEDALEQSARLV 502

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
             G  P+  +Y++LI G+C  G++D   +LF  +    C PD+ +Y  L+  +S+     
Sbjct: 503 KMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTS 562

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
            A+ L  EM+  G  P                       L  +N L+  L  + ++  A+
Sbjct: 563 MAMELLQEMVREGHTPA----------------------LATYNVLIRSLSMAGQVEDAY 600

Query: 427 ELFKKLPRYGPEPNVVTYTVM 447
            LFK++   G  P++ TY+ +
Sbjct: 601 TLFKEMIAKGFNPDMQTYSAL 621



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 140/342 (40%), Gaps = 54/342 (15%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGR-GIYPDAFVYNSLIRVYCCAVNWEDAKG 252
           P+ + + + +  LC+   V +   LF DM+      PD   YN+LI  YC A       G
Sbjct: 87  PDTVAFTAAMHWLCEVRRVEQAMTLFDDMRETCDCAPDVVAYNTLIAGYCKA-------G 139

Query: 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
           +   AL++              C P+ +S+ +++  LCK      A  +F +M   G+  
Sbjct: 140 DGDRALDMFRRLKQEGS-----CKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGLKA 194

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
           DV V ++LI   C +G +  AR+L   + +  C  D  +Y  L+N++ +  ++ E  S  
Sbjct: 195 DVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILVNAHCRAGQMHEVASF- 253

Query: 373 GEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
                M +   + C L A                  +N ++ G  +  RL  A +LF+  
Sbjct: 254 -----MELARHDGCALSAVN----------------YNFIIQGFIRCGRLAEATQLFEST 292

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIREC 474
                 P+V TY ++I  LC    +E+A  L  + E+                  K    
Sbjct: 293 MTKESVPDVFTYNLLI-ALCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRA 351

Query: 475 LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
            KA+E+ + M K    PD +  ++L   L K     E + LL
Sbjct: 352 AKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELL 393



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 128/287 (44%), Gaps = 24/287 (8%)

Query: 74  FFNYMIHMQPTPFMPS---FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           F+N    MQ    MP    +N L+  L  +      + L E +N  G++PD  + NI+++
Sbjct: 358 FYN----MQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVID 413

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
                     A+   G + R+  SPDVVT   L+ GL    +  EA  LF +  A  C  
Sbjct: 414 VLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKC-- 471

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
             +P++  + ++ID L K G +         +   G  P++++YN+LI  +C        
Sbjct: 472 --MPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFC-------R 522

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
            G      EL ++ +  +      C PD ++Y  ++    +      A EL  +M   G 
Sbjct: 523 SGQVDKGYELFQDMIECS------CFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGH 576

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
            P +  Y+ LI    + G+++DA  LF  + ++G  PD  +Y+ L N
Sbjct: 577 TPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFNPDMQTYSALPN 623



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 54/262 (20%), Positives = 103/262 (39%), Gaps = 47/262 (17%)

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           D  +  +++  +CK    +   EL  +++ +G+    V  +  I  +   G +D A  + 
Sbjct: 17  DAHTATAMVKEVCKLGRTELLAELLAELRQKGVGLSEVTCTECIQAFGRAGDLDAAMGML 76

Query: 338 VSIESEG-CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
             +     C PDT ++   ++   ++ +VE+A++L+ +M     R    C          
Sbjct: 77  DDMRRGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDM-----RETCDC---------- 121

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP-EPNVVTYTVMICGLCIEG 455
                   D+  +N L+ G CK+     A ++F++L + G  +PN V++  ++  LC   
Sbjct: 122 ------APDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLC--- 172

Query: 456 GIEKAYDLLPDMEEKIRECLK---------------------AIELLHKMAKRYVKPDEI 494
            + +A D L   +E +   LK                     A  LLH M       D  
Sbjct: 173 KMSRATDALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAF 232

Query: 495 TVSILEELLNKDENCHECMNLL 516
           T  IL     +    HE  + +
Sbjct: 233 TYGILVNAHCRAGQMHEVASFM 254


>gi|225430029|ref|XP_002281569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g25630-like [Vitis vinifera]
          Length = 635

 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 110/478 (23%), Positives = 214/478 (44%), Gaps = 51/478 (10%)

Query: 37  SSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGA 96
           S L   S  TV  +TKL+  + E  +  EV+        + +I     P + ++ +LL A
Sbjct: 62  SCLSKTSCRTVRSRTKLMNIMIEKGRPQEVQ-----SILDSIIEGGHKPSLVTYTTLLAA 116

Query: 97  LAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPD 156
           L  +K++ +   +  ++   G+ PD +  N ++N F +   + +A     ++      P 
Sbjct: 117 LTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPT 176

Query: 157 VVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVR 216
             T   LI+G  + G+  E+  L  + ++ D   NV PN+  Y  ++   C    + K  
Sbjct: 177 TSTFNTLIKGYGIAGEPEESQKLL-ELMSQD--ENVRPNLRTYNVLVRAWCNKKNIMKAW 233

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            +   M   G+ PDA  YN++   Y          G  S A  +  E  N N        
Sbjct: 234 NVVYKMVASGLQPDAVTYNTIATAYA-------QNGEASQAEGIILEMQNSN------VQ 280

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+  + C II   CK+  + +A +    MK  G+ P++VV++SLI G+      D   ++
Sbjct: 281 PNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEV 340

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS--CIL------ 388
              +E  G  PD  +++T++N++S    +++   ++ +M+   ++PD     IL      
Sbjct: 341 LTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVR 400

Query: 389 -----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                +A E+   +  + F  ++ +F  +++G C + R+  A ++F+K+   G  PN+ T
Sbjct: 401 AGEPEKAEEILNAMIKSGFHPNVVIFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKT 460

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEE 501
           +  +I G                   + R+  K+ E+L  M +  V+P++ T+ ++ E
Sbjct: 461 FETLIWGYG-----------------EARQPWKSEEVLQIMEEFNVQPEKTTLLLVAE 501



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 109/471 (23%), Positives = 205/471 (43%), Gaps = 60/471 (12%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGA--LAGKKYYVNFIC--LSERLNTI 116
           S+SG ++  +A+ +F  M      P   +FN+L+    +AG+      +   +S+  N  
Sbjct: 153 SESGNMQ--EAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLELMSQDEN-- 208

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
            + P+  + N+L+  +C    +  A+  + +++     PD VT   +       G+ ++A
Sbjct: 209 -VRPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGEASQA 267

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
            G+  +        NV PN      II G CK+G + +       MK  G+ P+  V+NS
Sbjct: 268 EGIILEMQ----NSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNS 323

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI+ +  AV+    +   +  L L EEF       GV   PDV+++ +I+N+      +D
Sbjct: 324 LIKGFIDAVD----RDGVNEVLTLMEEF-------GV--KPDVITFSTIMNAWSAAGFMD 370

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           K +E+F DM    I PD  VYS L  GY   G  + A ++  ++   G  P+   + T+I
Sbjct: 371 KCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVVIFTTII 430

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           N +    ++E A+ ++ +M   G+ P                      +L  F  L+ G 
Sbjct: 431 NGWCSAGRMEYAIKIFEKMCECGIAP----------------------NLKTFETLIWGY 468

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLK 476
            ++ +   + E+ + +  +  +P   T  +++       G++K  +       +I   +K
Sbjct: 469 GEARQPWKSEEVLQIMEEFNVQPEKTTL-LLVAEAWRATGLKKEAN-------RILSAVK 520

Query: 477 AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEES 527
             E+ H+  +     D+I V  LE+   K          LP+ +  +Q+ S
Sbjct: 521 NEEMTHETDRE----DKIPVGSLEKHYQKPSASFPNQLQLPNLVISDQKGS 567


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 102/414 (24%), Positives = 184/414 (44%), Gaps = 32/414 (7%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLL-GALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           DA+  F+ M      P   ++N+++ G + G      F  L +++   GL P+ ++ N+L
Sbjct: 33  DAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGF-RLRDQMVCHGLKPNAITYNVL 91

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           ++  C+   + +    L  +  +   PD  T   L  GL   G       LF K++    
Sbjct: 92  LSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGV 151

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
               I +  C + +++GLCKDG V+    +   +   G+ P   +YN+LI  YC     E
Sbjct: 152 ---TIGDYTC-SILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELE 207

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
            A          H               PD ++Y ++IN LCK   +  A++L ++M+  
Sbjct: 208 GAFSTFGQMKSRH-------------IKPDHITYNALINGLCKAERITNAQDLLMEMQDN 254

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G+ P V  +++LID Y   G+++    +   ++  G  P+  SY +++N++ K  K+ EA
Sbjct: 255 GVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEA 314

Query: 369 LSLYGEMISMGVRPD----NSCILEAAE---------LFRTLHNTKFELDLTVFNCLVDG 415
           +++  +M    V P+    N+ I    E         L   + +      +  +N L+ G
Sbjct: 315 VAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKG 374

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           LC   ++  A E+   L  +   P+ V+Y  +I   C  G I+KA DL   M +
Sbjct: 375 LCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHK 428



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 169/386 (43%), Gaps = 45/386 (11%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+  S N+++    +     DA      +  +   P+ +T   +I G    G       L
Sbjct: 13  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 72

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             + V    +PN I     Y  ++ GLC+ G + +   L  +M  + + PD F Y+ L  
Sbjct: 73  RDQMVCHGLKPNAI----TYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILF- 127

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII-NSLCKDVLVDKA 298
                 +     G++ A L L  +++     +G          CSI+ N LCKD  V  A
Sbjct: 128 ------DGLSRNGDSKAMLSLFGKYLKNGVTIGDYT-------CSILLNGLCKDGKVSIA 174

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
           +E+   + + G++P  V+Y++LI+GYC  G ++ A   F  ++S    PD  +YN LIN 
Sbjct: 175 EEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALING 234

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
             K E++  A  L  EM   GV P                       +  FN L+D   +
Sbjct: 235 LCKAERITNAQDLLMEMQDNGVNP----------------------TVETFNTLIDAYGR 272

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAI 478
           + +L   + +  ++   G +PNVV+Y  ++   C  G I +A  +L DM  K  + L   
Sbjct: 273 TGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHK--DVLPNA 330

Query: 479 ELLHKMAKRYVK--PDEITVSILEEL 502
           ++ + +   YV+  P++    ++E++
Sbjct: 331 QVYNAIIDAYVEHGPNDQAFILVEKM 356



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 158/364 (43%), Gaps = 47/364 (12%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           + L   GL+P  V  N L+N +C+   +  AF   G++  +   PD +T   LI GLC  
Sbjct: 179 QSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKA 238

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
            + T A  L  +         V P V  + ++ID   + G + K  ++  +M+  G+ P+
Sbjct: 239 ERITNAQDLLMEMQ----DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPN 294

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS----YCSII 286
              Y S++  +C         G    A+ + ++            H DVL     Y +II
Sbjct: 295 VVSYGSIVNAFC-------KNGKIPEAVAILDDMF----------HKDVLPNAQVYNAII 337

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           ++  +    D+A  L   MKS GI P +V Y+ LI G C   +I +A ++  S+ +   I
Sbjct: 338 DAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLI 397

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406
           PD  SYNTLI++      +++AL L   M   G++             RT H        
Sbjct: 398 PDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIK----------STVRTYHQ------- 440

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
                L+ GL  + RL     L++K+ +    P+   + +M+      G   KA DL  +
Sbjct: 441 -----LISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKE 495

Query: 467 MEEK 470
           M +K
Sbjct: 496 MLQK 499



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 131/311 (42%), Gaps = 17/311 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           EL  A   F  M      P   ++N+L+  L   +   N   L   +   G+ P   + N
Sbjct: 205 ELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFN 264

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ + +   +   F+ L  +      P+VV+ G ++   C  GK  EA  +       
Sbjct: 265 TLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHK 324

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           D    V+PN   Y +IID   + G  ++  +L   MK  GI P    YN LI+  C    
Sbjct: 325 D----VLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQ 380

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
             +A           EE +N      +I  PD +SY ++I++ C    +DKA +L   M 
Sbjct: 381 ISEA-----------EEIINSLSNHRLI--PDAVSYNTLISACCYRGNIDKALDLQQRMH 427

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
             GI   V  Y  LI G    GR+++   L+  +     +P  + +N ++ +YSK     
Sbjct: 428 KYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEI 487

Query: 367 EALSLYGEMIS 377
           +A  L  EM+ 
Sbjct: 488 KAEDLRKEMLQ 498



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 74/174 (42%), Gaps = 39/174 (22%)

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406
           P+  SYN +I    +  +  +A+ ++ EM    V P++                      
Sbjct: 13  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNH---------------------- 50

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             +N ++DG  K   L + + L  ++  +G +PN +TY V++ GLC  G + +       
Sbjct: 51  ITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETS----- 105

Query: 467 MEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
                        LL +MA + + PD  T SIL + L+++ +    ++L   +L
Sbjct: 106 ------------ALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYL 147


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 106/423 (25%), Positives = 200/423 (47%), Gaps = 33/423 (7%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLL-GALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +DAL  F+ M+     P   ++N+++ G + G      F  L +++   G  P+ V+ N+
Sbjct: 212 SDALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFR-LRDQMLQDGRKPNVVTYNV 270

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++  C+   + +    +  +      PD  T   L  GL   G       LF + +   
Sbjct: 271 LLSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESL--- 327

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            +  VI      + +++GLCKDG V K   +   +   G+ P   +YN+LI  YC     
Sbjct: 328 -KKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYC---QV 383

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
            D +G  S   ++    +           PD ++Y ++IN LCK  ++ +A++L ++M+ 
Sbjct: 384 RDLQGAFSIFEQMKSRHI----------RPDHITYNALINGLCKMEMITEAEDLVMEMEK 433

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            G+ P V  +++LID Y   G+++    +   ++ +G   +  S+ +++ ++ K  K+ E
Sbjct: 434 SGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPE 493

Query: 368 ALSLYGEMISMGVRPD----NSCI---------LEAAELFRTLHNTKFELDLTVFNCLVD 414
           A+++  +MI   V P+    NS I          +A  L   + ++     +  +N L+ 
Sbjct: 494 AVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLK 553

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE-KIRE 473
           GLCK+ ++  A EL   L   G  P+VV+Y  +I   C +G  ++A +LL +M +  IR 
Sbjct: 554 GLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIRP 613

Query: 474 CLK 476
            L+
Sbjct: 614 TLR 616



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 108/423 (25%), Positives = 176/423 (41%), Gaps = 72/423 (17%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142
           P P + S N LL +L     + +       L   G  PD  + N  +        + +A 
Sbjct: 119 PLPSLSSCNLLLESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDLDEAL 178

Query: 143 VALGRILRKVFSP--DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI------- 193
             L R+ R   +P  D  +   +I GL   GK ++A  +F + V     PN I       
Sbjct: 179 AMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMID 238

Query: 194 ------------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYP 229
                                   PNV+ Y  ++ GLC+ G +++ R L  +M    + P
Sbjct: 239 GHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLP 298

Query: 230 DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY-CSII-N 287
           D F Y+ L        +     G++   L L  E +    + GVI    + +Y CSI+ N
Sbjct: 299 DGFTYSILF-------DGLTRTGDSRTMLSLFGESL----KKGVI----IGAYTCSILLN 343

Query: 288 SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
            LCKD  V KA+++   +   G++P   +Y++LI+GYC +  +  A  +F  ++S    P
Sbjct: 344 GLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRP 403

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLT 407
           D  +YN LIN   K+E + EA  L  EM   GV P                       + 
Sbjct: 404 DHITYNALINGLCKMEMITEAEDLVMEMEKSGVDP----------------------SVE 441

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            FN L+D   ++ +L   + +   +   G + NV+++  ++   C  G I +A  +L DM
Sbjct: 442 TFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDM 501

Query: 468 EEK 470
             K
Sbjct: 502 IHK 504



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/426 (22%), Positives = 181/426 (42%), Gaps = 78/426 (18%)

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
           LP   S N+L+     +   +D   A G ++     PD       ++     G   EA  
Sbjct: 120 LPSLSSCNLLLESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDLDEALA 179

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           +  +    +  P   P+   Y  +I GL + G  +    +F +M  RG+ P+   YN++I
Sbjct: 180 MLRRMGRSEGAPP--PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMI 237

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
             +          G+  A   L ++ +    +      P+V++Y  +++ LC+   +D+ 
Sbjct: 238 DGHV-------KGGDLEAGFRLRDQMLQDGRK------PNVVTYNVLLSGLCRAGRMDET 284

Query: 299 KELFLDMKSRGIIPDVVVYSSLID-----------------------------------G 323
           + L  +M S  ++PD   YS L D                                   G
Sbjct: 285 RALMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNG 344

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            C  G++  A ++   +   G +P T+ YNTLIN Y ++  ++ A S++ +M S  +RPD
Sbjct: 345 LCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPD 404

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
           +                        +N L++GLCK   +  A +L  ++ + G +P+V T
Sbjct: 405 H----------------------ITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVET 442

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEK-IRECLKAIELLHKMAKRYVKPDEI--TVSILE 500
           +  +I      G +EK + +L DM++K I+  + +      + K + K  +I   V+IL+
Sbjct: 443 FNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVIS---FGSVVKAFCKNGKIPEAVAILD 499

Query: 501 ELLNKD 506
           ++++KD
Sbjct: 500 DMIHKD 505



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 139/312 (44%), Gaps = 25/312 (8%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           ++H    P    +N+L+      +       + E++ +  + PD ++ N L+N  CKM  
Sbjct: 361 LVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEM 420

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK----FTEASGLFTKFVAFDCRPNVI 193
           +++A   +  + +    P V T   LI      G+    FT  S +  K         + 
Sbjct: 421 ITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDK--------GIK 472

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
            NVI + S++   CK+G + +   +  DM  + + P+A VYNS+I  Y          G 
Sbjct: 473 SNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYI-------ESGG 525

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
           T  A  L E+  +            + +Y  ++  LCK+  +D+A+EL  ++ ++G+ PD
Sbjct: 526 TEQAFLLVEKMKSSG------VSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPD 579

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           VV Y+++I   C  G  D A +L   +      P   +Y+ L+++     +V +   LY 
Sbjct: 580 VVSYNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHPLLSALGSAGRVHDMECLYQ 639

Query: 374 EMISMGVRPDNS 385
            M+   V P +S
Sbjct: 640 HMVHKNVEPSSS 651



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 128/307 (41%), Gaps = 17/307 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L  A   F  M      P   ++N+L+  L   +       L   +   G+ P   + N
Sbjct: 385 DLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFN 444

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ + +   +   F  L  +  K    +V++ G +++  C  GK  EA  +    +  
Sbjct: 445 TLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHK 504

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           D    V+PN   Y SIID   + G   +  +L   MK  G+    F YN L++  C    
Sbjct: 505 D----VVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQ 560

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            ++A           EE +      G+   PDV+SY +II++ C     D+A EL  +M 
Sbjct: 561 IDEA-----------EELIYNLTNQGL--RPDVVSYNTIISACCNKGDTDRALELLQEMH 607

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
              I P +  Y  L+      GR+ D   L+  +  +   P +S Y T   + SK+  ++
Sbjct: 608 KYDIRPTLRTYHPLLSALGSAGRVHDMECLYQHMVHKNVEPSSSIYGTRCENESKVASLK 667

Query: 367 EALSLYG 373
           + +S  G
Sbjct: 668 KEMSEKG 674



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 82/175 (46%), Gaps = 15/175 (8%)

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           R  +P +   + L++    +GR  D R  F  + + G  PDT ++N  + +      ++E
Sbjct: 117 RSPLPSLSSCNLLLESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDLDE 176

Query: 368 ALSLYGEM-ISMGVRPDNSCIL--------------EAAELFRTLHNTKFELDLTVFNCL 412
           AL++   M  S G  P ++                 +A ++F  + +     +   +N +
Sbjct: 177 ALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTM 236

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +DG  K   L + + L  ++ + G +PNVVTY V++ GLC  G +++   L+ +M
Sbjct: 237 IDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEM 291


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 115/472 (24%), Positives = 208/472 (44%), Gaps = 48/472 (10%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142
           P P   S+N ++  L       + + L + +    ++P+ ++ N +++   K   +   F
Sbjct: 184 PAPNAFSYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGF 243

Query: 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202
               ++LR    P+V+T   L+ GLC  G+  E + +  +  +      ++P+   Y+ +
Sbjct: 244 RLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMAS----RKMVPDGFTYSIL 299

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
            DG  + G    +  LF +   +G+   A+  + L+   C         G  S A E+ +
Sbjct: 300 FDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLC-------KDGKISKAEEVLQ 352

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
             VN       +    V+ Y ++IN  C+   ++ A  +F  MKSR I PD + Y++LI+
Sbjct: 353 TLVNSG-----LLQTTVI-YNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALIN 406

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
           G   + RI +A  L + +E  G  P   ++NTLI++Y +  ++E+   +  +M   G++P
Sbjct: 407 GLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKP 466

Query: 383 D-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
           +             N  ILEA  +   +          V+N ++D   +      A+ L 
Sbjct: 467 NVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLA 526

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKA---------YDLLPDM---EEKIRECL-- 475
           +K+   G  P++VTY ++I GLC +  I +A         Y L PD+      I  C   
Sbjct: 527 EKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYR 586

Query: 476 ----KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
               +A+EL  +M K  +KP   T  +L   L      HE  NL    L ++
Sbjct: 587 SNTDRALELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKD 638



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 100/427 (23%), Positives = 174/427 (40%), Gaps = 50/427 (11%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L      ++ M+     P + ++N LL  L           + + + +  ++PD  + +
Sbjct: 238 DLESGFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYS 297

Query: 127 ILMNCFCKMIGVSDAFVAL-GRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           IL +   +  G S   ++L    ++K       T   L+ GLC  GK ++A  +    V 
Sbjct: 298 ILFDGHSR-TGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLV- 355

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
                 ++   + Y ++I+G C+ G +     +F  MK R I PD   YN+LI       
Sbjct: 356 ---NSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVE 412

Query: 246 NWEDA--------KGNTSAALELHEEFVNGNGELGVI--------------CHPDVLSYC 283
              +A        K   + ++E     ++  G  G +                P+V+SY 
Sbjct: 413 RITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYG 472

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
           SI+N+ CK+  + +A  +  DM  + ++P   VY+++ID Y   G  D A  L   ++S 
Sbjct: 473 SIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSS 532

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFE 403
           G  P   +YN LI    K                       S I EA EL  +L N    
Sbjct: 533 GVPPSIVTYNLLIKGLCK----------------------QSQISEAEELLDSLRNYGLA 570

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D+  +N L+   C       A EL K++ + G +P+  TY ++   L   G + +  +L
Sbjct: 571 PDVISYNTLISACCYRSNTDRALELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVHEMENL 630

Query: 464 LPDMEEK 470
              M +K
Sbjct: 631 YQQMLDK 637



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 128/298 (42%), Gaps = 46/298 (15%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GLL   V  N L+N +C++  +  AF    ++  ++  PD +T   LI GL    + TEA
Sbjct: 358 GLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEA 417

Query: 177 SGLFTKFVAFDCRPNV-------------------------------IPNVICYASIIDG 205
             L  +       P+V                                PNV+ Y SI++ 
Sbjct: 418 HDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNA 477

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC-CAVNWEDAKGNTSAALELHEEF 264
            CK+G + +   +  DM  + + P A VYN++I  Y  C        G+T  A  L E+ 
Sbjct: 478 FCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIEC--------GSTDQAFMLAEKM 529

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
            +          P +++Y  +I  LCK   + +A+EL   +++ G+ PDV+ Y++LI   
Sbjct: 530 KSSG------VPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISAC 583

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
           C     D A +L   +   G  P   +Y  L +S     +V E  +LY +M+   V P
Sbjct: 584 CYRSNTDRALELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKDVVP 641



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 131/314 (41%), Gaps = 17/314 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L  A   F  M      P   ++N+L+  L   +       L   +   G+ P   + N
Sbjct: 378 DLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFN 437

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ + +   +   F+ L  +  K   P+VV+ G ++   C  GK  EA  +       
Sbjct: 438 TLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIK 497

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           D    V+P    Y +IID   + G  ++  +L   MK  G+ P    YN LI+  C    
Sbjct: 498 D----VLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLC---- 549

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
               +   S A EL +   N          PDV+SY ++I++ C     D+A EL  +M 
Sbjct: 550 ---KQSQISEAEELLDSLRNYG------LAPDVISYNTLISACCYRSNTDRALELEKEMW 600

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
             GI P    Y  L       GR+ +   L+  +  +  +P +  YN ++++Y+K  +  
Sbjct: 601 KCGIKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKDVVPCSGIYNIMVDAYAKCGEES 660

Query: 367 EALSLYGEMISMGV 380
           +  +L  EM   G+
Sbjct: 661 KVEALRKEMSDKGI 674



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 31/186 (16%)

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS-- 385
           GR  D R  F  + +    PDT ++N  + +      ++EA+ +   M   G    N+  
Sbjct: 131 GRHADVRGAFELLVAARARPDTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNAFS 190

Query: 386 ------------CILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
                          +A +LF  +       +   +N ++DG  K   L S + L+ ++ 
Sbjct: 191 YNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQML 250

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDE 493
           R+G +PNV+TY V++ GLC  G +                  +   +L +MA R + PD 
Sbjct: 251 RHGLKPNVITYNVLLSGLCRAGRMG-----------------ETAAVLDEMASRKMVPDG 293

Query: 494 ITVSIL 499
            T SIL
Sbjct: 294 FTYSIL 299


>gi|2462828|gb|AAB72163.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1152

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 116/451 (25%), Positives = 200/451 (44%), Gaps = 67/451 (14%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           TP+  SFN L+     +  + +   +++ +   G+ P   + NI +   C    + DA  
Sbjct: 344 TPY--SFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDA-- 399

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
               +L  + +PDVV+   L+ G    GKF EAS LF    A D    + P+++ Y ++I
Sbjct: 400 --RELLSSMAAPDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGD----IHPSIVTYNTLI 453

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
           DGLC+ G +   + L  +M  + I+PD   Y +L++ +          GN S A E+++E
Sbjct: 454 DGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFV-------KNGNLSMATEVYDE 506

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM-KSRGIIPDVVVYSSLID 322
            +           PD  +Y +      +    DKA  L  +M  +    PD+ +Y+  ID
Sbjct: 507 MLRKG------IKPDGYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRID 560

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
           G C +G +  A +    I   G +PD  +Y T+I  Y +  + + A +LY EM+   + P
Sbjct: 561 GLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYP 620

Query: 383 DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
                                  +  +  L+ G  K+ RL  A++   ++ + G  PNV+
Sbjct: 621 S----------------------VITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVM 658

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEEK------------------IRECLKAIELLHKM 484
           T+  ++ G+C  G I++AY  L  MEE+                    +  + ++L  +M
Sbjct: 659 THNALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLISKNCDFEKWEEVVKLYKEM 718

Query: 485 AKRYVKPDEITVSILEELLNKDENCHECMNL 515
             + ++PD  T   L + L KD   HE M L
Sbjct: 719 LDKEIEPDGYTHRALFKHLEKD---HESMAL 746



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 123/480 (25%), Positives = 196/480 (40%), Gaps = 59/480 (12%)

Query: 72  LCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131
           L  F  MI     P + + N +L  L   +       + E +   G++P  ++ N +++ 
Sbjct: 225 LLSFEKMIRKGFLPSVRNCNIVLKVLRDSRMMNKASAVYETMIEHGIMPTVITFNTMLDS 284

Query: 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
             K   +         + R+      VT   LI G    GK  EA     +F     R  
Sbjct: 285 CFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEAR----RFHGDMRRSG 340

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
                  +  +I+G CK G  +    +  +M   GIYP    YN    +Y CA+      
Sbjct: 341 FAVTPYSFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYN----IYICALC---DF 393

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
           G    A EL          L  +  PDV+SY ++++   K     +A  LF D+++  I 
Sbjct: 394 GRIDDAREL----------LSSMAAPDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIH 443

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           P +V Y++LIDG C  G ++ A++L   + ++   PD  +Y TL+  + K   +  A  +
Sbjct: 444 PSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEV 503

Query: 372 YGEMISMGVRPDNSCILEAA-----------------ELFRTLHNTKFELDLTVFNCLVD 414
           Y EM+  G++PD       A                 E+  T H+     DLT++N  +D
Sbjct: 504 YDEMLRKGIKPDGYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHAP---DLTIYNVRID 560

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM------- 467
           GLCK   L  A E  +K+ R G  P+ VTYT +I G    G  + A +L  +M       
Sbjct: 561 GLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYP 620

Query: 468 -----------EEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                        K     +A +   +M KR V+P+ +T + L   + K  N  E    L
Sbjct: 621 SVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRYL 680


>gi|147812173|emb|CAN61517.1| hypothetical protein VITISV_033966 [Vitis vinifera]
          Length = 635

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 117/488 (23%), Positives = 217/488 (44%), Gaps = 35/488 (7%)

Query: 37  SSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGA 96
           S L   S  TV  +TKL+  + E  +  EV+        + +I     P + ++ +LL A
Sbjct: 62  SCLSKTSCRTVRSRTKLMNIMIEKGRPQEVQ-----SILDSIIEGGHKPSLVTYTTLLAA 116

Query: 97  LAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPD 156
           L  +K++ +   +  ++   G+ PD +  N ++N F +   + +A     ++      P 
Sbjct: 117 LTIQKHFDSIHSIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPT 176

Query: 157 VVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVR 216
             T   LI+G  + G+  E+  L  + ++ D   NV PN+  Y  ++   C    + K  
Sbjct: 177 TSTFNTLIKGYGIAGEPEESQKLL-ZLMSQD--ENVRPNLRTYNVLVRAWCNKXNIMKAW 233

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            +   M   G+ PDA  YN++   Y          G  S A  +  E  N N        
Sbjct: 234 NVVYKMVASGLQPDAVTYNTIATAYA-------QNGEASQAEGIILEMQNSN------VQ 280

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+  + C II   CK+  + +A +    MK  G+ P++VV++SLI G+      D   ++
Sbjct: 281 PNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEV 340

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS--CIL------ 388
              +E  G  PD  +++T++N++S    +++   ++ +M+   ++PD     IL      
Sbjct: 341 LTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVR 400

Query: 389 -----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                +A E+   +  + F  ++ +F  +++G C + R+  A ++F+K+   G  PN+ T
Sbjct: 401 AGEPEKAEEILNAMIKSGFHPNVVMFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKT 460

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELL 503
           +  +I G        K+ ++L  MEE   +  K   LL   A R     +    IL  + 
Sbjct: 461 FETLIWGYGEARQPWKSEEVLQIMEEFNVQPEKTTLLLVAEAWRATGLKKEANRILSAVK 520

Query: 504 NKDENCHE 511
           N +E  HE
Sbjct: 521 N-EETTHE 527


>gi|357499665|ref|XP_003620121.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495136|gb|AES76339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 408

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 159/338 (47%), Gaps = 68/338 (20%)

Query: 225 RGIYPDAFVYNSLI-------------RV-YCCAVNWEDAKGNTSAALELHEEFVNGNGE 270
           +GI PD F YN LI             RV Y   +N     G T AAL L +E VN    
Sbjct: 92  KGIKPDLFTYNVLINCFSQLGHTHFLDRVSYETLINGLCKVGETRAALRLLKE-VNEK-- 148

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
              I   DV+ Y +IIN LCKD LVD A +L+ +M ++ + PDV  Y+++I G+C++GR+
Sbjct: 149 ---IVQYDVVMYTAIINGLCKDKLVDDAFDLYTEMVAKRVSPDVFTYNAMIYGFCVVGRL 205

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NS- 385
            DA  LF  ++ E    D  ++NTL++++ K   V E  ++   M+  GV+PD    NS 
Sbjct: 206 KDAIGLFNDMKLENVEADEYTFNTLVSAFCKEGNVREGKAVVAVMMKEGVKPDIITYNSL 265

Query: 386 ----CILEAAE----------------------LFRTLHNTKFELDLTVFNCLVDGLCKS 419
               C+++  +                      LF+ +H  +   D   ++ L+DG CKS
Sbjct: 266 MDGYCLVKEVDKAKNIFNTMVQRGVTANVRTMNLFQEMHCKEIIPDTIAYSSLIDGFCKS 325

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIE 479
            R+  A EL  ++   G  PN++TY  ++  LC                 KI    K I 
Sbjct: 326 GRIPQALELVDEMHDRGQPPNIITYNSILYALC-----------------KIHHVEKTIA 368

Query: 480 LLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLP 517
           LL K+  + ++PD  T +IL   L KD    E   + P
Sbjct: 369 LLRKIKVKGIQPDAYTYTILTNGLFKDGRLEEAREIFP 406



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 121/260 (46%), Gaps = 9/260 (3%)

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           D V    ++N  CK   V DAF     ++ K  SPDV T   +I G C+ G+  +A GLF
Sbjct: 153 DVVMYTAIINGLCKDKLVDDAFDLYTEMVAKRVSPDVFTYNAMIYGFCVVGRLKDAIGLF 212

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
                     NV  +   + +++   CK+G V + + +   M   G+ PD   YNSL+  
Sbjct: 213 NDMKL----ENVEADEYTFNTLVSAFCKEGNVREGKAVVAVMMKEGVKPDIITYNSLMDG 268

Query: 241 YCCAVNWEDAKG--NTSAALELHEEFVNGNGELGVICH---PDVLSYCSIINSLCKDVLV 295
           YC     + AK   NT     +       N    + C    PD ++Y S+I+  CK   +
Sbjct: 269 YCLVKEVDKAKNIFNTMVQRGVTANVRTMNLFQEMHCKEIIPDTIAYSSLIDGFCKSGRI 328

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
            +A EL  +M  RG  P+++ Y+S++   C +  ++    L   I+ +G  PD  +Y  L
Sbjct: 329 PQALELVDEMHDRGQPPNIITYNSILYALCKIHHVEKTIALLRKIKVKGIQPDAYTYTIL 388

Query: 356 INSYSKIEKVEEALSLYGEM 375
            N   K  ++EEA  ++ ++
Sbjct: 389 TNGLFKDGRLEEAREIFPDL 408


>gi|255547341|ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546332|gb|EEF47834.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 172/383 (44%), Gaps = 49/383 (12%)

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLN-TIGLLPDFVSLNILMNCFC 133
           FN +  ++ + F PS   + G L      V  +  + R+   +G  P   + N L+N   
Sbjct: 106 FNALSQLRGSKFNPS---VFGVLIIAFSEVGLVDEALRVYLKVGAFPAVQACNALLNGLL 162

Query: 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
           K       +     ++ +   P VVT   L+   C QG    A  L ++ V    +  + 
Sbjct: 163 KKSSFDIMWELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRAKSLISEMV----KKGIE 218

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P V+ Y ++I GLC +  + +   +F  MK  G++P+ + YN L+  YC          N
Sbjct: 219 PTVVIYTTLIHGLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYC-------KTAN 271

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
              AL L++      G L     P+V+++  +I++LCK   +  A+  F+ M   G++P+
Sbjct: 272 VKQALHLYQ------GMLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVVPN 325

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           VVV++SLIDGY   G   +A  L + +E     PD  +Y+ LI +  ++  VEEA  +  
Sbjct: 326 VVVFNSLIDGYSKAGNCSEATDLLLEMEKFKISPDVFTYSILIKNACRLGTVEEADDILK 385

Query: 374 EMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK-- 431
            M   GV P NS                      V+N L+DG CK   +  A E+FK   
Sbjct: 386 RMEKEGV-PANS---------------------VVYNSLIDGYCKEGNMEKALEIFKATK 423

Query: 432 ----LPRYGPEPNVVTYTVMICG 450
               + R G  P+ + Y VM+ G
Sbjct: 424 FFSDMRRNGLRPDALAYAVMLQG 446



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 118/479 (24%), Positives = 208/479 (43%), Gaps = 65/479 (13%)

Query: 42  NSVSTVEEKTKLLKYLSENSKSGEVELN-----DALCFFNYMIHMQP---TPFMPSFNSL 93
           +S+  VE K +    LS  S    + L+      AL  F  ++   P   T  +  ++++
Sbjct: 9   HSLKLVETKIRFFTSLSPPSDLTTIILHSKTPEQALDTFTSVLKQNPNNPTKKLHLYSAV 68

Query: 94  LGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVF 153
           +  L G K Y    CL++         D +   +L +C  + +  S  F AL ++    F
Sbjct: 69  IHYLTGAKVYPTARCLTK---------DLIQ-TLLQSCTPRRVN-SLVFNALSQLRGSKF 117

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN 213
           +P V   G LI      G   EA  ++ K  AF       P V    ++++GL K    +
Sbjct: 118 NPSV--FGVLIIAFSEVGLVDEALRVYLKVGAF-------PAVQACNALLNGLLKKSSFD 168

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
            +  L+ +M  R ++P    YN L+   CC       +G+   A  L  E V    E   
Sbjct: 169 IMWELYNNMVSRRLFPTVVTYNVLVDA-CC------RQGDVLRAKSLISEMVKKGIE--- 218

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
              P V+ Y ++I+ LC +  + +A+ +F  MK  G+ P++  Y+ L+DGYC    +  A
Sbjct: 219 ---PTVVIYTTLIHGLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTANVKQA 275

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCI-- 387
             L+  +  +G  P+  ++  LI++  K+ ++  A   + +M   GV P+    NS I  
Sbjct: 276 LHLYQGMLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVVPNVVVFNSLIDG 335

Query: 388 -------LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
                   EA +L   +   K   D+  ++ L+   C+   +  A ++ K++ + G   N
Sbjct: 336 YSKAGNCSEATDLLLEMEKFKISPDVFTYSILIKNACRLGTVEEADDILKRMEKEGVPAN 395

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
            V Y  +I G C EG +EKA            E  KA +    M +  ++PD +  +++
Sbjct: 396 SVVYNSLIDGYCKEGNMEKAL-----------EIFKATKFFSDMRRNGLRPDALAYAVM 443



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 148/336 (44%), Gaps = 50/336 (14%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + + N+LL  L  K  +     L   + +  L P  V+ N+L++  C+   V  A   
Sbjct: 149 PAVQACNALLNGLLKKSSFDIMWELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRAKSL 208

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI----------- 193
           +  +++K   P VV    LI GLC + K  EA  +F +       PN+            
Sbjct: 209 ISEMVKKGIEPTVVIYTTLIHGLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCK 268

Query: 194 --------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233
                               PNV+ +  +ID LCK   +   R  F+ M   G+ P+  V
Sbjct: 269 TANVKQALHLYQGMLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVVPNVVV 328

Query: 234 YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDV 293
           +NSLI  Y  A N  +A   T   LE+ +  ++          PDV +Y  +I + C+  
Sbjct: 329 FNSLIDGYSKAGNCSEA---TDLLLEMEKFKIS----------PDVFTYSILIKNACRLG 375

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA------RKLFVSIESEGCIP 347
            V++A ++   M+  G+  + VVY+SLIDGYC  G ++ A       K F  +   G  P
Sbjct: 376 TVEEADDILKRMEKEGVPANSVVYNSLIDGYCKEGNMEKALEIFKATKFFSDMRRNGLRP 435

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           D  +Y  ++  +   + + + + L+ +MI MG+ P+
Sbjct: 436 DALAYAVMLQGHLNAKHMADVMMLHADMIKMGIVPN 471



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 130/298 (43%), Gaps = 23/298 (7%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           M+     P +  + +L+  L  +   +    +  ++   G+ P+  + N+LM+ +CK   
Sbjct: 212 MVKKGIEPTVVIYTTLIHGLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTAN 271

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           V  A      +L     P+VVT G LI  LC   +   A   F +   F     V+PNV+
Sbjct: 272 VKQALHLYQGMLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKF----GVVPNVV 327

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            + S+IDG  K G  ++   L L+M+   I PD F Y+ LI+  C     E+A       
Sbjct: 328 VFNSLIDGYSKAGNCSEATDLLLEMEKFKISPDVFTYSILIKNACRLGTVEEADDILK-- 385

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL------DMKSRGII 311
             + +E V  N           + Y S+I+  CK+  ++KA E+F       DM+  G+ 
Sbjct: 386 -RMEKEGVPANS----------VVYNSLIDGYCKEGNMEKALEIFKATKFFSDMRRNGLR 434

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
           PD + Y+ ++ G+     + D   L   +   G +P+  +   +   Y     ++ AL
Sbjct: 435 PDALAYAVMLQGHLNAKHMADVMMLHADMIKMGIVPNEVTSQVVRRGYQDNGYLKSAL 492



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 111/246 (45%), Gaps = 39/246 (15%)

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
           L V   P V +  +++N L K    D   EL+ +M SR + P VV Y+ L+D  C  G +
Sbjct: 143 LKVGAFPAVQACNALLNGLLKKSSFDIMWELYNNMVSRRLFPTVVTYNVLVDACCRQGDV 202

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEA 390
             A+ L   +  +G  P    Y TLI+      K+ EA S++ +M   GV P+       
Sbjct: 203 LRAKSLISEMVKKGIEPTVVIYTTLIHGLCSESKLMEAESMFRQMKDSGVFPN------- 255

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
                          L  +N L+DG CK+  ++ A  L++ +   G +PNVVT+ ++I  
Sbjct: 256 ---------------LYTYNVLMDGYCKTANVKQALHLYQGMLDDGLQPNVVTFGILIDA 300

Query: 451 LCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCH 510
           LC                 K+RE L A     +MAK  V P+ +  + L +  +K  NC 
Sbjct: 301 LC-----------------KVRELLAARRFFVQMAKFGVVPNVVVFNSLIDGYSKAGNCS 343

Query: 511 ECMNLL 516
           E  +LL
Sbjct: 344 EATDLL 349


>gi|357142290|ref|XP_003572522.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 669

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 117/457 (25%), Positives = 201/457 (43%), Gaps = 60/457 (13%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           MI     P   +F + + +        + + L ER+   G  PD V  + L+N F +   
Sbjct: 236 MIRNNCHPNEVTFATQIRSFCQNGLLDHAVQLLERMPRYGCTPDVVIYSTLVNGFSEQGR 295

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           V DA V L  +L K   P+ V     ++GLCM  ++ +   L  + V  DC PN      
Sbjct: 296 VDDALVLLNTMLCK---PNTVCYNAALKGLCMAERWKDVGELIAEMVRKDCPPNEA---- 348

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            ++ +   LC+ G V+    +   M+  G  PD  +YN+LI       N+   +G    A
Sbjct: 349 TFSMLTSCLCQHGLVDCAMEVVEQMQKYGCRPDVVIYNTLI-------NYFSEQGRVDDA 401

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
           L L +          ++C+PD +S+ + + +LC+       +EL   M         + +
Sbjct: 402 LMLLD---------SMLCNPDTISFNAALKALCRTERWYDVEELIAQMLREDCPLIEMTF 452

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           + LID  C  G ++ A ++F  +    C PD  +Y++LIN +S+   VE A+ L+    S
Sbjct: 453 NILIDSLCQHGLVNHAIEVFEQMPKYRCTPDIVTYSSLINGFSEQGLVESAIELFQ---S 509

Query: 378 MGVRPD----NSCIL---------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
           M  +PD    N+ +          +A EL   +       +   FN L++ LC+      
Sbjct: 510 MPCKPDIFSYNAVLKGLCRAARWEDAGELIANMARKDCPPNEITFNILINSLCQKGFADR 569

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME---------------- 468
           A E+FK++P YG  P++ TY  +I G   +G ++ A +LL  M                 
Sbjct: 570 AIEVFKQMPEYGSTPDIFTYNALINGFSEQGRLDDALNLLSTMSCKPDAISYNSTLKGLC 629

Query: 469 --EKIRECLKAIELLHKMAKRYVKPDEITVSILEELL 503
             E+ +E   A E++ +M ++   P+E+T     +L 
Sbjct: 630 RAERWKE---AEEIVAEMLRKKCPPNEVTFKYANQLF 663



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 110/404 (27%), Positives = 179/404 (44%), Gaps = 48/404 (11%)

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           + V+   L+N +C+   ++DA   L  I     +PD  T   +++GLC   ++ +A  L 
Sbjct: 177 NVVTYTALINGYCRSGRLADA---LNLIASMPVAPDTYTYNTVLKGLCGAKQWEKAEELM 233

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            + +    R N  PN + +A+ I   C++G ++    L   M   G  PD  +Y++L   
Sbjct: 234 EEMI----RNNCHPNEVTFATQIRSFCQNGLLDHAVQLLERMPRYGCTPDVVIYSTL--- 286

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
               VN    +G    AL L            ++C P+ + Y + +  LC         E
Sbjct: 287 ----VNGFSEQGRVDDALVLLNT---------MLCKPNTVCYNAALKGLCMAERWKDVGE 333

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           L  +M  +   P+   +S L    C  G +D A ++   ++  GC PD   YNTLIN +S
Sbjct: 334 LIAEMVRKDCPPNEATFSMLTSCLCQHGLVDCAMEVVEQMQKYGCRPDVVIYNTLINYFS 393

Query: 361 KIEKVEEALSLYGEM------ISMGVRPDNSCILE----AAELFRTLHNTKFELDLTVFN 410
           +  +V++AL L   M      IS        C  E      EL   +      L    FN
Sbjct: 394 EQGRVDDALMLLDSMLCNPDTISFNAALKALCRTERWYDVEELIAQMLREDCPLIEMTFN 453

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            L+D LC+   +  A E+F+++P+Y   P++VTY+ +I G   +G +E A +L   M  K
Sbjct: 454 ILIDSLCQHGLVNHAIEVFEQMPKYRCTPDIVTYSSLINGFSEQGLVESAIELFQSMPCK 513

Query: 471 -----IRECLKAI----------ELLHKMAKRYVKPDEITVSIL 499
                    LK +          EL+  MA++   P+EIT +IL
Sbjct: 514 PDIFSYNAVLKGLCRAARWEDAGELIANMARKDCPPNEITFNIL 557



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 143/326 (43%), Gaps = 38/326 (11%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
           P V+    LI+ LC   +  +A  +         + +   + + + +++ G C+DG +  
Sbjct: 108 PAVIACNILIKKLCAHRRLADAERVLDAL-----KESGSADAVSHNTLVAGYCRDGRLAD 162

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
              +    K  G   +   Y +LI  YC +    DA  N  A++ +              
Sbjct: 163 AERVLEAAKVSGA-ANVVTYTALINGYCRSGRLADAL-NLIASMPVA------------- 207

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
             PD  +Y +++  LC     +KA+EL  +M      P+ V +++ I  +C  G +D A 
Sbjct: 208 --PDTYTYNTVLKGLCGAKQWEKAEELMEEMIRNNCHPNEVTFATQIRSFCQNGLLDHAV 265

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEA---- 390
           +L   +   GC PD   Y+TL+N +S+  +V++AL L   M+    +P+  C   A    
Sbjct: 266 QLLERMPRYGCTPDVVIYSTLVNGFSEQGRVDDALVLLNTML---CKPNTVCYNAALKGL 322

Query: 391 --AELFRTLHNTKFEL-------DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
             AE ++ +     E+       +   F+ L   LC+   +  A E+ +++ +YG  P+V
Sbjct: 323 CMAERWKDVGELIAEMVRKDCPPNEATFSMLTSCLCQHGLVDCAMEVVEQMQKYGCRPDV 382

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDM 467
           V Y  +I     +G ++ A  LL  M
Sbjct: 383 VIYNTLINYFSEQGRVDDALMLLDSM 408



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 108/241 (44%), Gaps = 41/241 (17%)

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           D +S+ +++   C+D  +  A+ +    K  G   +VV Y++LI+GYC  GR+ DA  L 
Sbjct: 143 DAVSHNTLVAGYCRDGRLADAERVLEAAKVSGAA-NVVTYTALINGYCRSGRLADALNLI 201

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397
            S+      PDT +YNT++      ++ E+A  L  EMI     P+              
Sbjct: 202 ASMP---VAPDTYTYNTVLKGLCGAKQWEKAEELMEEMIRNNCHPNE------------- 245

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                      F   +   C++  L  A +L +++PRYG  P+VV Y+ ++ G   +G +
Sbjct: 246 ---------VTFATQIRSFCQNGLLDHAVQLLERMPRYGCTPDVVIYSTLVNGFSEQGRV 296

Query: 458 EKAYDLLPDMEEK-----IRECLKAI----------ELLHKMAKRYVKPDEITVSILEEL 502
           + A  LL  M  K         LK +          EL+ +M ++   P+E T S+L   
Sbjct: 297 DDALVLLNTMLCKPNTVCYNAALKGLCMAERWKDVGELIAEMVRKDCPPNEATFSMLTSC 356

Query: 503 L 503
           L
Sbjct: 357 L 357


>gi|242073234|ref|XP_002446553.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
 gi|241937736|gb|EES10881.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
          Length = 381

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 144/301 (47%), Gaps = 35/301 (11%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           PNV+ Y  IID +C++G V++ R L   +  RG  P+   YN++++  C    W DA+  
Sbjct: 14  PNVVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGLCSIERWVDAE-- 71

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
                EL +E V  N      C P+  +   I+N+L +  L+ K       M   G   +
Sbjct: 72  -----ELLDEMVREN------CPPNEATVNVIVNTLSRKGLLQKVTRYLEKMSKHGCTAN 120

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           VV Y+++I G C  G +D A +L  +++S GC PD  +YNTL+      ++ E+A  L  
Sbjct: 121 VVTYNAVISGMCEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGLCSADQWEDAEELMI 180

Query: 374 EMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
           +M      PDN                        FN ++  LC+   +  A+E+FK++P
Sbjct: 181 KMSQNDCLPDN----------------------VTFNTIISFLCQKGLILQAFEVFKQMP 218

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDE 493
             G  PN  TY+ +I GL   G +E+A +LL +M  K     K  +LL +   +  K +E
Sbjct: 219 EKGCNPNSTTYSTIIGGLAKAGKMEQALELLNEMASKGYNTDKMYQLLTESLNKEDKIEE 278

Query: 494 I 494
           +
Sbjct: 279 V 279



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 173/361 (47%), Gaps = 31/361 (8%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  P+ V+ N++++  C+   V  A   L  +  +   P+ V    +++GLC   ++ +A
Sbjct: 11  GCEPNVVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGLCSIERWVDA 70

Query: 177 SGLFTKFVAFDCRPN-VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
             L  + V  +C PN    NVI     ++ L + G + KV      M   G   +   YN
Sbjct: 71  EELLDEMVRENCPPNEATVNVI-----VNTLSRKGLLQKVTRYLEKMSKHGCTANVVTYN 125

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           ++I   C        +G+  +ALEL    ++     G  C PD+++Y +++  LC     
Sbjct: 126 AVISGMC-------EQGHVDSALEL----LSNMQSFG--CKPDIVTYNTLLKGLCSADQW 172

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           + A+EL + M     +PD V ++++I   C  G I  A ++F  +  +GC P++++Y+T+
Sbjct: 173 EDAEELMIKMSQNDCLPDNVTFNTIISFLCQKGLILQAFEVFKQMPEKGCNPNSTTYSTI 232

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDN------------SCILEAAELFRTLHNTKFE 403
           I   +K  K+E+AL L  EM S G   D               I E  ++   L ++   
Sbjct: 233 IGGLAKAGKMEQALELLNEMASKGYNTDKMYQLLTESLNKEDKIEEVVQVVHKLQDSGIS 292

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
               +FN ++  LC++ +   A ++   +  YG  P+ +TY ++I GL  EG +++A +L
Sbjct: 293 PQTVLFNTVLLVLCRNGKTDYAIDVLADMVSYGCMPDELTYIILIEGLSYEGYLQEAREL 352

Query: 464 L 464
           +
Sbjct: 353 V 353



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 115/263 (43%), Gaps = 35/263 (13%)

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           EL   M++ G  P+VV Y+ +ID  C  G +D AR+L  S+ S GC P+T +YNT++   
Sbjct: 2   ELIDLMRAEGCEPNVVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGL 61

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCI-------------LEAAELFRTLHNTKFELDL 406
             IE+  +A  L  EM+     P+ + +              +       +       ++
Sbjct: 62  CSIERWVDAEELLDEMVRENCPPNEATVNVIVNTLSRKGLLQKVTRYLEKMSKHGCTANV 121

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             +N ++ G+C+   + SA EL   +  +G +P++VTY  ++ GLC     E A +L+  
Sbjct: 122 VTYNAVISGMCEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGLCSADQWEDAEELMIK 181

Query: 467 MEEKIREC--------------------LKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
           M +   +C                    L+A E+  +M ++   P+  T S +   L K 
Sbjct: 182 MSQ--NDCLPDNVTFNTIISFLCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLAKA 239

Query: 507 ENCHECMNLLPSFLSRNQEESKL 529
               + + LL    S+     K+
Sbjct: 240 GKMEQALELLNEMASKGYNTDKM 262


>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
 gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
          Length = 764

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 118/476 (24%), Positives = 201/476 (42%), Gaps = 83/476 (17%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P +P++N ++G L           + + +   GL P+  ++NI+++  CK   + +A   
Sbjct: 268 PNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSI 327

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI----------- 193
              +  KV SPD  T   LI GL  QG+  +A  ++ + +  D  PNV+           
Sbjct: 328 FEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFK 387

Query: 194 --------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233
                               P+++   + +D + K G   K R LF ++K RG  PD   
Sbjct: 388 CDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRS 447

Query: 234 YNSLI----------------------------RVYCCAVNWEDAKGNTSAALELHEEFV 265
           Y+ LI                            R Y   ++     G  + A +L EE  
Sbjct: 448 YSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMK 507

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
                     HP V++Y S+++ L K   +D+A  LF + KS GI  + V+YSSLIDG+ 
Sbjct: 508 TMGH------HPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFG 561

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN- 384
            +GR+D+A  +   +  +G  P+  ++N L++   K E++ EAL  +  M  +   P+  
Sbjct: 562 KVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQI 621

Query: 385 -SCIL-----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
             CIL           +A   ++ +     + +   +  ++ GL KS  +  A  LF++ 
Sbjct: 622 TYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFERF 681

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-----IRECLKAIELLHK 483
              G  P+  +Y  MI GL I      AY L  +   K      + C+  ++ LHK
Sbjct: 682 RASGGIPDSASYNAMIEGLSIANRALDAYQLFEETRLKGCSIHTKTCVALLDALHK 737



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 171/385 (44%), Gaps = 40/385 (10%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL+PD V+   +M   CK   + +A     ++ +    P       +I G    GKF EA
Sbjct: 161 GLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEA 220

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L  +  A  C    IP+V+ Y  I+  L K G  +K   +F +MK R   P+   YN 
Sbjct: 221 YSLLERQRAKGC----IPSVVAYNCILTCLGKKGKTDKALRIFEEMK-RDAMPNLPTYNI 275

Query: 237 LIRVYCCAVNWEDAKGNTSA----------------------ALELHEEFVNGNGELGVI 274
           +I + C A N E A     A                      A +L E      G    +
Sbjct: 276 IIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKV 335

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
           C PD  ++CS+I+ L K   VD A  ++  M     IP+VVVY+SLI  +    R +D  
Sbjct: 336 CSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGH 395

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS--CIL---- 388
           K++  +   GC PD    NT ++   K  + E+  +L+ E+ + G  PD     IL    
Sbjct: 396 KMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSL 455

Query: 389 -------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
                  E  EL+  + +    LD   +N ++DG CKS ++  A++L +++   G  P V
Sbjct: 456 VKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTV 515

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPD 466
           VTY  ++ GL     +++AY L  +
Sbjct: 516 VTYGSVVDGLAKIDRLDEAYMLFEE 540



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 148/317 (46%), Gaps = 27/317 (8%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMP---SFNSLLGALAGKKYYVNFICLSERLNTIGL 118
           K+GE E   AL        ++   F+P   S++ L+ +L    +      L   +   G 
Sbjct: 422 KAGETEKGRAL-----FEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGC 476

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
           + D  + N +++ FCK   V+ A+  L  +      P VVT G ++ GL    +  EA  
Sbjct: 477 VLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYM 536

Query: 179 LFTKFVAFDCRPNVIP-NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
           LF      + + N I  N + Y+S+IDG  K G V++  ++  +M  +G+ P+ + +N L
Sbjct: 537 LFE-----EAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCL 591

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           +                  A E++E  V       + C P+ ++YC +IN LCK    +K
Sbjct: 592 L-------------DGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNK 638

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A   + +M+ +G+ P+ + Y+++I G    G +  A  LF    + G IPD++SYN +I 
Sbjct: 639 AFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRASGGIPDSASYNAMIE 698

Query: 358 SYSKIEKVEEALSLYGE 374
             S   +  +A  L+ E
Sbjct: 699 GLSIANRALDAYQLFEE 715



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 149/340 (43%), Gaps = 31/340 (9%)

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           LG +    F P   T   L+       K  EA  L      F  RP        Y ++I 
Sbjct: 14  LGEMSIAGFGPTNYTCVELVASCVKSRKLIEAFDLLQMMRHFKFRPAFSA----YTTLIG 69

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
            L + G  +++  LF  M+  G   +  +  +LIRV+         +G   AAL L +E 
Sbjct: 70  ALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVF-------SREGRVDAALSLLDEM 122

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
            +   +       D++ Y   I+   K   VD A + F +MK+ G++PD V Y+S++   
Sbjct: 123 KSNTFD------ADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVL 176

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD- 383
           C   R+D+A ++F  +E    +P   +YNT+I  Y    K +EA SL     + G  P  
Sbjct: 177 CKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSV 236

Query: 384 --NSCIL----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
              +CIL          +A  +F  +       +L  +N ++  LCK+  + +A+++   
Sbjct: 237 VAYNCILTCLGKKGKTDKALRIFEEMKRDAMP-NLPTYNIIIGMLCKAGNVEAAFKVRDA 295

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI 471
           +   G  PNV T  +MI  LC    +++A  +   M+ K+
Sbjct: 296 MKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKV 335



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 164/403 (40%), Gaps = 70/403 (17%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGAL-------AGKKYYVNFICLSERL 113
            K G V+  DA   +  M+     P +  + SL+           G K Y       + +
Sbjct: 351 GKQGRVD--DAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMY-------KEM 401

Query: 114 NTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF 173
              G  PD + LN  M+C  K             I  + F PD  +   LI  L   G  
Sbjct: 402 MRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFA 461

Query: 174 TEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233
            E   L+       C    + +   Y ++IDG CK G VNK   L  +MK  G +P    
Sbjct: 462 RETYELYYAMKDQGC----VLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVT 517

Query: 234 YNSLI-------RVYCCAVNWEDAKGNTSAALELHE----EFVNGNGELGVI-------- 274
           Y S++       R+    + +E+AK N    +EL++      ++G G++G +        
Sbjct: 518 YGSVVDGLAKIDRLDEAYMLFEEAKSN---GIELNQVIYSSLIDGFGKVGRVDEAYLVME 574

Query: 275 ------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                   P+V ++  +++ L K   +++A   F  MK     P+ + Y  LI+G C + 
Sbjct: 575 EMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVR 634

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL 388
           + + A   +  ++ +G  P+T +Y  +I+  +K   V +A SL+    + G  PD++   
Sbjct: 635 KFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRASGGIPDSAS-- 692

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
                               +N +++GL  + R   A++LF++
Sbjct: 693 --------------------YNAMIEGLSIANRALDAYQLFEE 715



 Score = 42.0 bits (97), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 70/186 (37%), Gaps = 31/186 (16%)

Query: 370 SLYGEMISMGVRPDN--------SCI-----LEAAELFRTLHNTKFELDLTVFNCLVDGL 416
            + GEM   G  P N        SC+     +EA +L + + + KF    + +  L+  L
Sbjct: 12  QILGEMSIAGFGPTNYTCVELVASCVKSRKLIEAFDLLQMMRHFKFRPAFSAYTTLIGAL 71

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------- 469
            +         LF ++   G E NV   T +I     EG ++ A  LL +M+        
Sbjct: 72  SEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDADI 131

Query: 470 -----------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPS 518
                      K+ +   A +  H+M    + PD++T + +  +L K     E + +   
Sbjct: 132 VLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQ 191

Query: 519 FLSRNQ 524
                Q
Sbjct: 192 MEQNRQ 197


>gi|414885390|tpg|DAA61404.1| TPA: hypothetical protein ZEAMMB73_280584 [Zea mays]
          Length = 645

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 114/467 (24%), Positives = 200/467 (42%), Gaps = 94/467 (20%)

Query: 88  PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGR 147
           P+   L+ AL+        + +  RL T+  LP   + N +++   K      A+     
Sbjct: 120 PALGVLVIALSQMGLLDEALYVFRRLRTLPALP---ACNAVLDGLVKARRPGCAWELFDE 176

Query: 148 ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207
           +LR+   P VVT   LI     QG   +A  ++ + VA      + PNV+ Y ++I  LC
Sbjct: 177 MLRRGLVPSVVTYNTLINACRFQGTVAKAQEVWDQMVA----QQIDPNVVTYTTMICALC 232

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
           ++G +     LF  MK  G+ P+ + YN L+  +C        + + ++A+ L++E +  
Sbjct: 233 EEGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHC-------QRDDVNSAVVLYQELLKS 285

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
                   +P+ + + ++I+  CK     +AK +FL+M   G+ P V VY+SL+DG    
Sbjct: 286 G------LNPNAVIFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRS 339

Query: 328 GRIDDARKLFVSIESEGCIPD-----------------------------------TSSY 352
           G   +A  L+  +   G  PD                                    ++Y
Sbjct: 340 GNAQEALALYQEMTRLGLCPDEFTCSIVVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAY 399

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCL 412
           N LI+ Y +I  +EEAL+    M  +G+ P+                      +  ++ L
Sbjct: 400 NALIDEYCRIGNLEEALATCTRMTEVGIEPN----------------------VVSYSSL 437

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIR 472
           +DG  K  +++ A  ++ ++   G EPNVVTYT +I G    GGI+ A+ L  +M E   
Sbjct: 438 IDGHSKRGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIEN-- 495

Query: 473 ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519
                           + P+ ITVS+L + L ++    E +  +  +
Sbjct: 496 ---------------GISPNAITVSVLVDGLCRENRVQEAVRFVMEY 527



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/425 (24%), Positives = 191/425 (44%), Gaps = 71/425 (16%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L++AL  F     ++  P +P+ N++L  L   +       L + +   GL+P  V+ N 
Sbjct: 135 LDEALYVFR---RLRTLPALPACNAVLDGLVKARRPGCAWELFDEMLRRGLVPSVVTYNT 191

Query: 128 LMNCFCKMIG-VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           L+N  C+  G V+ A     +++ +   P+VVT   +I  LC +G   +A  LF      
Sbjct: 192 LINA-CRFQGTVAKAQEVWDQMVAQQIDPNVVTYTTMICALCEEGCIGDAERLFDAMKEA 250

Query: 187 DCRPN-------------------------------VIPNVICYASIIDGLCKDGFVNKV 215
             +PN                               + PN + + ++IDG CK    ++ 
Sbjct: 251 GMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLNPNAVIFTTLIDGFCKAKRFSEA 310

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
           + +FL+M   G+ P   VYNSL+       +     GN   AL L++E       LG +C
Sbjct: 311 KGMFLEMPRFGVAPTVPVYNSLM-------DGAFRSGNAQEALALYQEMT----RLG-LC 358

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
            PD  +   ++  LC    +  A      ++  G+  +   Y++LID YC +G +++A  
Sbjct: 359 -PDEFTCSIVVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAYNALIDEYCRIGNLEEALA 417

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395
               +   G  P+  SY++LI+ +SK  K++ A+++Y EM++ G+ P             
Sbjct: 418 TCTRMTEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIYTEMVAKGIEP------------- 464

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
                    ++  +  L+ G  K+  + +A+ L K++   G  PN +T +V++ GLC E 
Sbjct: 465 ---------NVVTYTALIHGHAKNGGIDAAFRLHKEMIENGISPNAITVSVLVDGLCREN 515

Query: 456 GIEKA 460
            +++A
Sbjct: 516 RVQEA 520



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 105/422 (24%), Positives = 191/422 (45%), Gaps = 45/422 (10%)

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           ++ M+  Q  P + ++ +++ AL  +    +   L + +   G+ P+  + N+LM+  C+
Sbjct: 209 WDQMVAQQIDPNVVTYTTMICALCEEGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQ 268

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
              V+ A V    +L+   +P+ V    LI G C   +F+EA G+F +   F     V P
Sbjct: 269 RDDVNSAVVLYQELLKSGLNPNAVIFTTLIDGFCKAKRFSEAKGMFLEMPRF----GVAP 324

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC------------ 242
            V  Y S++DG  + G   +   L+ +M   G+ PD F  + ++R  C            
Sbjct: 325 TVPVYNSLMDGAFRSGNAQEALALYQEMTRLGLCPDEFTCSIVVRGLCDGGQMHVADRFL 384

Query: 243 CAVNWEDAKGNTSAALELHEEFVN-GN-----------GELGVICHPDVLSYCSIINSLC 290
             V  +    N +A   L +E+   GN            E+G+   P+V+SY S+I+   
Sbjct: 385 QGVQEDGVNLNAAAYNALIDEYCRIGNLEEALATCTRMTEVGI--EPNVVSYSSLIDGHS 442

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K   +  A  ++ +M ++GI P+VV Y++LI G+   G ID A +L   +   G  P+  
Sbjct: 443 KRGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIENGISPNAI 502

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL---- 406
           + + L++   +  +V+EA+    E             L+ +++     N   E +     
Sbjct: 503 TVSVLVDGLCRENRVQEAVRFVMEYSG----------LKCSDIHSVFSNFTIEEECLIPN 552

Query: 407 -TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
             ++  L+ GL    +   A +LF  + + G  P+  TYT++I G C+ G +  A  L  
Sbjct: 553 SVIYMTLIYGLYLDGQHCEAGKLFSYMRKSGMIPDSFTYTLLIRGQCMLGYVLNAMMLYA 612

Query: 466 DM 467
           DM
Sbjct: 613 DM 614



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 146/335 (43%), Gaps = 38/335 (11%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
             ++A   F  M      P +P +NSL+            + L + +  +GL PD  + +
Sbjct: 306 RFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEMTRLGLCPDEFTCS 365

Query: 127 ILMNCFCK--MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
           I++   C    + V+D F  L  +     + +      LI   C  G   EA    T+  
Sbjct: 366 IVVRGLCDGGQMHVADRF--LQGVQEDGVNLNAAAYNALIDEYCRIGNLEEALATCTRMT 423

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
                  + PNV+ Y+S+IDG  K G +     ++ +M  +GI P+   Y +LI  +   
Sbjct: 424 EV----GIEPNVVSYSSLIDGHSKRGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHA-- 477

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                  G   AA  LH+E +    E G+   P+ ++   +++ LC++  V +A    ++
Sbjct: 478 -----KNGGIDAAFRLHKEMI----ENGI--SPNAITVSVLVDGLCRENRVQEAVRFVME 526

Query: 305 -----------------MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
                            ++   +IP+ V+Y +LI G  L G+  +A KLF  +   G IP
Sbjct: 527 YSGLKCSDIHSVFSNFTIEEECLIPNSVIYMTLIYGLYLDGQHCEAGKLFSYMRKSGMIP 586

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
           D+ +Y  LI     +  V  A+ LY +M+ +GV+P
Sbjct: 587 DSFTYTLLIRGQCMLGYVLNAMMLYADMMKIGVKP 621



 Score = 46.6 bits (109), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 86/190 (45%), Gaps = 23/190 (12%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           +SK G++++  A+  +  M+     P + ++ +L+   A          L + +   G+ 
Sbjct: 441 HSKRGKMQI--AMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIENGIS 498

Query: 120 PDFVSLNILMNCFCKMIGVSDA--FVALGRILR-----KVFS----------PDVVTLGC 162
           P+ +++++L++  C+   V +A  FV     L+      VFS          P+ V    
Sbjct: 499 PNAITVSVLVDGLCRENRVQEAVRFVMEYSGLKCSDIHSVFSNFTIEEECLIPNSVIYMT 558

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           LI GL + G+  EA  LF+    +  +  +IP+   Y  +I G C  G+V    +L+ DM
Sbjct: 559 LIYGLYLDGQHCEAGKLFS----YMRKSGMIPDSFTYTLLIRGQCMLGYVLNAMMLYADM 614

Query: 223 KGRGIYPDAF 232
              G+ P  +
Sbjct: 615 MKIGVKPTRY 624


>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Brachypodium distachyon]
          Length = 810

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 116/480 (24%), Positives = 204/480 (42%), Gaps = 73/480 (15%)

Query: 80  HMQPTPFMPS---FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMI 136
            M     +PS    + +L  L   + + + +CL E +   GL PD  + N L++  C+  
Sbjct: 357 QMTGQGLLPSTFELSLVLKGLLNDRRWKDAVCLFEEMADSGL-PDVFTYNNLIHWHCQAH 415

Query: 137 GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNV 196
            + +A     R+ +    P + T   L+ G C +G   EA  L+++      +PNV+   
Sbjct: 416 KLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVV--- 472

Query: 197 ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSA 256
             Y +++ G       +    L  +MK  G+  + + YN LI   C      +  G   +
Sbjct: 473 -TYITLMRGYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKS 531

Query: 257 --------ALELHEEFVNGNGELGVICH--------------PDVLSYCSIINSLCKDVL 294
                    +  +   +NG  + G++                P++++Y S I+  C+   
Sbjct: 532 FMSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGC 591

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
            D A ++  D++ RG+ PD+V Y++LI+G+C  G +  A +L V +  +G  P+T  YN+
Sbjct: 592 SDMALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNS 651

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           LI  Y  +  ++E    Y  MI  G+  D S                       +  L+D
Sbjct: 652 LITGYKNLNMMKEVSKFYESMIKGGIVADTS----------------------TYTTLID 689

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE----- 469
           G  K   +  A EL+ ++   G  P+  T+T +  GLC  G I+ A  LL +M       
Sbjct: 690 GFSKDGNVAFALELYSEMMAKGYIPDAFTFTALTHGLCRSGDIDGAKKLLEEMRRLDVRP 749

Query: 470 -----------KIREC--LKAIELLHKMAKRYVKPDEITVSIL--EELLNKDENCHECMN 514
                       +R+C   +A  L  +M    ++PD+ T  IL  ++ L  D NC + +N
Sbjct: 750 NVFIYNMLINGYLRDCKLQEAFRLHDEMLNMGIQPDDTTYDILVSKKFLEAD-NCADVLN 808



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 170/374 (45%), Gaps = 48/374 (12%)

Query: 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV 215
           DV+    L+RG C++ +   A  LF + +    +  ++P  + Y  +I G  + G   K 
Sbjct: 296 DVIVATTLMRGYCLRQEVGNALNLFKETL----KDGIVPTKVMYGVLIRGCDQVGMTQKA 351

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
             L   M G+G+ P  F  + +++       W+D       A+ L EE  +         
Sbjct: 352 YELCRQMTGQGLLPSTFELSLVLKGLLNDRRWKD-------AVCLFEEMADSG------- 397

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
            PDV +Y ++I+  C+   + +A  LF  MK  G+ P +  Y+SL+ GYC  G +D+A K
Sbjct: 398 LPDVFTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVK 457

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC--------- 386
           L+  +  EG  P+  +Y TL+  Y   +  + A +L  EM   GV  ++           
Sbjct: 458 LYSEMPMEGFKPNVVTYITLMRGYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGIC 517

Query: 387 ----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
               + E   + ++  +  F   +  +N +++G  K+  + SA+ +++++   G  PN++
Sbjct: 518 MVDRVCEVDGMLKSFMSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNII 577

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEEL 502
           TYT  I G C  G          DM         A+++L+ + +R ++PD +  + L   
Sbjct: 578 TYTSFIDGYCRTG--------CSDM---------ALKMLNDVRRRGLQPDIVAYNALING 620

Query: 503 LNKDENCHECMNLL 516
             ++ N    + LL
Sbjct: 621 FCQEGNMSHALQLL 634



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 141/319 (44%), Gaps = 50/319 (15%)

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI------------ 238
            V+P++     ++    +         LF++M+GRG   DA+++++L+            
Sbjct: 152 GVVPDIKSRTDLLIRTARGSSAKDALALFMEMRGRGYRVDAWMFDALMSACLKEGMHEDA 211

Query: 239 ----------------RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV-ICHPDVLS 281
                           RVY  A+      G+   AL +  E      E+G   C     +
Sbjct: 212 VRLFDEMPGAEIDPDQRVYALAITALCKLGDGGRALRMLREM----KEVGFDTCD---FT 264

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           Y ++++ L K   +++A  +  +M+  G   DV+V ++L+ GYCL   + +A  LF    
Sbjct: 265 YRTMVDVLVKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQEVGNALNLFKETL 324

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---SCIL---------- 388
            +G +P    Y  LI    ++   ++A  L  +M   G+ P     S +L          
Sbjct: 325 KDGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQMTGQGLLPSTFELSLVLKGLLNDRRWK 384

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
           +A  LF  + ++    D+  +N L+   C++ +LR A  LF ++ + G +P++ TY  ++
Sbjct: 385 DAVCLFEEMADSGLP-DVFTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPSINTYNSLL 443

Query: 449 CGLCIEGGIEKAYDLLPDM 467
            G C +G +++A  L  +M
Sbjct: 444 MGYCKKGCMDEAVKLYSEM 462



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 103/252 (40%), Gaps = 36/252 (14%)

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353
           L   A + +  M +RG++PD+   + L+          DA  LF+ +   G   D   ++
Sbjct: 137 LPSAATDTYAHMVARGVVPDIKSRTDLLIRTARGSSAKDALALFMEMRGRGYRVDAWMFD 196

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPDNS---------CIL----EAAELFRTLHNT 400
            L+++  K    E+A+ L+ EM    + PD           C L     A  + R +   
Sbjct: 197 ALMSACLKEGMHEDAVRLFDEMPGAEIDPDQRVYALAITALCKLGDGGRALRMLREMKEV 256

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
            F+     +  +VD L K+ R+  A  +  ++   G + +V+  T ++ G C+   +  A
Sbjct: 257 GFDTCDFTYRTMVDVLVKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQEVGNA 316

Query: 461 YDLLPDMEEK------------IREC------LKAIELLHKMAKRYVKPDEITVS-ILEE 501
            +L  +  +             IR C       KA EL  +M  + + P    +S +L+ 
Sbjct: 317 LNLFKETLKDGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQMTGQGLLPSTFELSLVLKG 376

Query: 502 LLN----KDENC 509
           LLN    KD  C
Sbjct: 377 LLNDRRWKDAVC 388


>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
 gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
          Length = 742

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 189/443 (42%), Gaps = 57/443 (12%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+DA   F+ M      P   SF  L+       +    + L   +  +G  P+ V  N 
Sbjct: 72  LDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNT 131

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++ FCK     DA   +  + +   SPDVVT    I  LC  GK  EAS +F      +
Sbjct: 132 LISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQIDE 191

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN----SLIRVYCC 243
                 PN+I Y  ++ G CK+G + + R LF  MK      +   YN     L+R+   
Sbjct: 192 VLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLVRI--- 248

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                   G    A  + +E V    ++G+   P+V SY  +++ LCK+ ++  A+ L  
Sbjct: 249 --------GKLLEAQLVLKEMV----DMGM--EPNVYSYNIVMDGLCKNGVLFDARMLMR 294

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            M S G++PD V Y++L+ GYC  G++ +A  +   +  +GC P+  + N L+ S  K  
Sbjct: 295 LMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEG 354

Query: 364 KVEEALSLYGEMISMGVRPD------------------------NSCILEAAELFRTLHN 399
           ++ EA  L  +M   G   D                        N      +     L N
Sbjct: 355 RISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGN 414

Query: 400 TKFEL------------DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
           +   L            DL  ++ ++ GLCK+ R+  A + F ++     +P+   Y V 
Sbjct: 415 SYIGLVDDSDSRKKCMPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVF 474

Query: 448 ICGLCIEGGIEKAYDLLPDMEEK 470
           I   C EG I  A+ +L DME+K
Sbjct: 475 IHSFCKEGKISSAFRVLKDMEKK 497



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 102/404 (25%), Positives = 180/404 (44%), Gaps = 54/404 (13%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFN-SLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           L +A   F  M   +      S+N  LLG +   K     + L E ++ +G+ P+  S N
Sbjct: 216 LEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKLLEAQLVLKEMVD-MGMEPNVYSYN 274

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           I+M+  CK   + DA + +  +      PD VT   L+ G C  GK +EA+ +  + +  
Sbjct: 275 IVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRD 334

Query: 187 DCRPNVIP-NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
            C PN    N++ Y+     L K+G +++   L   M  +G   D    N +I   C   
Sbjct: 335 GCSPNNYTCNILLYS-----LWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLC--- 386

Query: 246 NWEDAKGNTSAALEL-HEEFVNGNGELGVI----------------CHPDVLSYCSIINS 288
                 G    A+E+ +  + +G+  LG +                C PD++SY +II+ 
Sbjct: 387 ----NNGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSDSRKKCMPDLISYSTIISG 442

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           LCK   V +AK+ F++M  + + PD  +Y   I  +C  G+I  A ++   +E +GC   
Sbjct: 443 LCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKT 502

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTV 408
             +YN+LI       ++ E   L  EM   GV P                      D+++
Sbjct: 503 LQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSP----------------------DVSI 540

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
           +N ++  LC+  R++ A  +  ++ + G  PN+ +++++I   C
Sbjct: 541 YNNVLSSLCEGGRVKDAPSVLDEMLQKGISPNISSFSILIKAFC 584



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 116/473 (24%), Positives = 203/473 (42%), Gaps = 79/473 (16%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L +A      M+ M   P + S+N ++  L       +   L   + + G+LPD V+  
Sbjct: 250 KLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYT 309

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSP------------------------------- 155
            L++ +C    VS+A   L  ++R   SP                               
Sbjct: 310 TLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMNEK 369

Query: 156 ----DVVTLGCLIRGLCMQGKFTEA----SGLFTKFVAF---------------DCRPNV 192
               D VT   +I GLC  GK  +A    +G++T   A                D R   
Sbjct: 370 GYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSDSRKKC 429

Query: 193 IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252
           +P++I Y++II GLCK G V + +  F++M G+ + PD+ +Y+  I  +C        +G
Sbjct: 430 MPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFC-------KEG 482

Query: 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
             S+A  + ++           C+  + +Y S+I  L     + +   L  +M+ RG+ P
Sbjct: 483 KISSAFRVLKDMEKKG------CNKTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSP 536

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI-------EKV 365
           DV +Y++++   C  GR+ DA  +   +  +G  P+ SS++ LI ++ K        E  
Sbjct: 537 DVSIYNNVLSSLCEGGRVKDAPSVLDEMLQKGISPNISSFSILIKAFCKACDFSAVDEIF 596

Query: 366 EEALSLYGEMISMGVRPDNSC-----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           E AL++ G   ++     N       +++A ELF T  +  F++   ++  L+D LCK  
Sbjct: 597 EIALNVCGHKEALYSLTFNELLVGGEVVKAKELFETALDRSFDVGNFLYKDLIDHLCKDE 656

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
           +L  A  +  KL   G   +  ++  +I GL   G   +A +L   M E   E
Sbjct: 657 KLDDASGILHKLIDKGYWFDPASFMPVIDGLGKRGNKHEADELAEKMMEMASE 709



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/416 (23%), Positives = 176/416 (42%), Gaps = 86/416 (20%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ P+  + N+L+   C    + DA     ++  K   P+  + G L+RG C  G  ++ 
Sbjct: 51  GVSPETYTFNVLIGLLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKG 110

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L  +      R    PN + Y ++I   CK+G  +    L  +M+  G+ PD   +N+
Sbjct: 111 LELLGEMR----RLGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNA 166

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGN-GELGVICHPDVLSYCSIINSLCKDVLV 295
            I   C          ++   LE    F +    E+  +  P++++Y  ++   CK+ ++
Sbjct: 167 RISALC----------SSGKVLEASRIFRDMQIDEVLGLPQPNIITYNLMLGGFCKEGML 216

Query: 296 DKAKELFLDMK-----------------------------------SRGIIPDVVVYSSL 320
           ++A+ LF  MK                                     G+ P+V  Y+ +
Sbjct: 217 EEARALFEKMKVSENLMNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIV 276

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           +DG C  G + DAR L   + S G +PDT +Y TL++ Y    KV EA ++  EM+  G 
Sbjct: 277 MDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGC 336

Query: 381 RPDN-SC------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
            P+N +C            I EA EL + ++   + +D    N ++DGLC + +L  A E
Sbjct: 337 SPNNYTCNILLYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIE 396

Query: 428 LFKKLPRYGPE-----------------------PNVVTYTVMICGLCIEGGIEKA 460
           +   +  +G                         P++++Y+ +I GLC  G + +A
Sbjct: 397 IVNGMWTHGSAALGNLGNSYIGLVDDSDSRKKCMPDLISYSTIISGLCKAGRVGEA 452



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 168/371 (45%), Gaps = 67/371 (18%)

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN 213
           SP+  T   LI  LC  G   +A  LF K     C PN       +  ++ G C+ GF +
Sbjct: 53  SPETYTFNVLIGLLCDSGCLDDARELFDKMPEKGCEPNEYS----FGILVRGYCRAGFTS 108

Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
           K   L  +M+  G  P+  VYN+LI  +C        +G T  A +L +E          
Sbjct: 109 KGLELLGEMRRLGFSPNKVVYNTLISSFC-------KEGKTDDAEKLVDEMRKDG----- 156

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII----PDVVVYSSLIDGYCLMGR 329
              PDV+++ + I++LC    V +A  +F DM+   ++    P+++ Y+ ++ G+C  G 
Sbjct: 157 -LSPDVVTFNARISALCSSGKVLEASRIFRDMQIDEVLGLPQPNIITYNLMLGGFCKEGM 215

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE 389
           +++AR LF  ++    + +  SYN  +    +I K+ EA  +  EM+ MG+ P+      
Sbjct: 216 LEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPN------ 269

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
                           +  +N ++DGLCK+  L  A  L + +   G  P+ VTYT ++ 
Sbjct: 270 ----------------VYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLH 313

Query: 450 GLCIEGGIEKAYDLLPDM---------------------EEKIRECLKAIELLHKMAKRY 488
           G C  G + +A ++L +M                     E +I E   A ELL KM ++ 
Sbjct: 314 GYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISE---AEELLQKMNEKG 370

Query: 489 VKPDEITVSIL 499
              D +T +I+
Sbjct: 371 YVIDTVTCNIV 381



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 129/283 (45%), Gaps = 30/283 (10%)

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
           P   P++  Y  ++    K+G V+ V  L  DM   G+ P+ + +N LI + C +   +D
Sbjct: 15  PENPPSIYLYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLDD 74

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
           A+           E  +   E G  C P+  S+  ++   C+     K  EL  +M+  G
Sbjct: 75  AR-----------ELFDKMPEKG--CEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLG 121

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
             P+ VVY++LI  +C  G+ DDA KL   +  +G  PD  ++N  I++     KV EA 
Sbjct: 122 FSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEAS 181

Query: 370 SLYGEM-----------------ISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCL 412
            ++ +M                 + +G       + EA  LF  +  ++  ++   +N  
Sbjct: 182 RIFRDMQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIW 241

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
           + GL +  +L  A  + K++   G EPNV +Y +++ GLC  G
Sbjct: 242 LLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNG 284



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 22/158 (13%)

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           P + +Y+ L+      GR+D    L   + + G  P+T ++N LI               
Sbjct: 19  PSIYLYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLI--------------- 63

Query: 372 YGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
                  G+  D+ C+ +A ELF  +     E +   F  LV G C++       EL  +
Sbjct: 64  -------GLLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGE 116

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           + R G  PN V Y  +I   C EG  + A  L+ +M +
Sbjct: 117 MRRLGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRK 154


>gi|15226583|ref|NP_179165.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216226|sp|Q9ZQF1.1|PP152_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g15630, mitochondrial; Flags: Precursor
 gi|4335729|gb|AAD17407.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251331|gb|AEC06425.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 627

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/396 (25%), Positives = 177/396 (44%), Gaps = 50/396 (12%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  P   + N ++    ++  + +A+V    + R     +V T   +I  LC +GK  +A
Sbjct: 185 GFYPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMINVLCKEGKLKKA 244

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
            G       F  +    P ++ Y +++ G    G +   R++  +MK +G  PD   YN 
Sbjct: 245 KGFLGIMEVFGIK----PTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNP 300

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           ++   C          N   A E+  E      E+G++  PD +SY  +I     +  ++
Sbjct: 301 ILSWMC----------NEGRASEVLREM----KEIGLV--PDSVSYNILIRGCSNNGDLE 344

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A     +M  +G++P    Y++LI G  +  +I+ A  L   I  +G + D+ +YN LI
Sbjct: 345 MAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILI 404

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFE 403
           N Y +    ++A +L+ EM++ G++P               +   EA ELF  +     +
Sbjct: 405 NGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMK 464

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            DL + N L+DG C    +  A+ L K++      P+ VTY  ++ GLC EG  E+A   
Sbjct: 465 PDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEAR-- 522

Query: 464 LPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                          EL+ +M +R +KPD I+ + L
Sbjct: 523 ---------------ELMGEMKRRGIKPDHISYNTL 543



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/406 (24%), Positives = 171/406 (42%), Gaps = 42/406 (10%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E +L  A  F   M      P + ++N+L+   + +        +   + + G  PD  +
Sbjct: 238 EGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQT 297

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N +++  C     S+    +  I      PD V+   LIRG    G    A     + V
Sbjct: 298 YNPILSWMCNEGRASEVLREMKEI---GLVPDSVSYNILIRGCSNNGDLEMAFAYRDEMV 354

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
               +  ++P    Y ++I GL  +  +    +L  +++ +GI  D+  YN LI  YC  
Sbjct: 355 ----KQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYC-- 408

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                  G+   A  LH+E +           P   +Y S+I  LC+     +A ELF  
Sbjct: 409 -----QHGDAKKAFALHDEMMTDG------IQPTQFTYTSLIYVLCRKNKTREADELFEK 457

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           +  +G+ PD+V+ ++L+DG+C +G +D A  L   ++     PD  +YN L+       K
Sbjct: 458 VVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGK 517

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
            EEA  L GEM   G++PD+                        +N L+ G  K    + 
Sbjct: 518 FEEARELMGEMKRRGIKPDH----------------------ISYNTLISGYSKKGDTKH 555

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           A+ +  ++   G  P ++TY  ++ GL      E A +LL +M+ +
Sbjct: 556 AFMVRDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSE 601



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 149/346 (43%), Gaps = 43/346 (12%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P M ++N +L  +  +      +     +  IGL+PD VS NIL+        +  AF  
Sbjct: 293 PDMQTYNPILSWMCNEGRASEVL---REMKEIGLVPDSVSYNILIRGCSNNGDLEMAFAY 349

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
              ++++   P   T   LI GL M+ K  EA+ +  + +       ++ + + Y  +I+
Sbjct: 350 RDEMVKQGMVPTFYTYNTLIHGLFMENKI-EAAEILIREIR---EKGIVLDSVTYNILIN 405

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           G C+ G   K   L  +M   GI P  F Y SLI V C        K  T  A EL E+ 
Sbjct: 406 GYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLC-------RKNKTREADELFEKV 458

Query: 265 V---------------NGNGELG--------------VICHPDVLSYCSIINSLCKDVLV 295
           V               +G+  +G              +  +PD ++Y  ++  LC +   
Sbjct: 459 VGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKF 518

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           ++A+EL  +MK RGI PD + Y++LI GY   G    A  +   + S G  P   +YN L
Sbjct: 519 EEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNAL 578

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK 401
           +   SK ++ E A  L  EM S G+ P++S      E    L   K
Sbjct: 579 LKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAMSNLDAKK 624



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 50/248 (20%)

Query: 273 VICHPDVLSYCSIINSL-----CKDVLVDKAKELFLDMKSRGIIP--------------- 312
           V+ H  + +  +I+  L     C+  +VD+A E F  MK +G  P               
Sbjct: 144 VLAHDRLETKSTILFDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRL 203

Query: 313 --------------------DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
                               +V  ++ +I+  C  G++  A+     +E  G  P   +Y
Sbjct: 204 NRIENAWVFYADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTY 263

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC---IL-------EAAELFRTLHNTKF 402
           NTL+  +S   ++E A  +  EM S G +PD      IL        A+E+ R +     
Sbjct: 264 NTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRASEVLREMKEIGL 323

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
             D   +N L+ G   +  L  A+    ++ + G  P   TY  +I GL +E  IE A  
Sbjct: 324 VPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEI 383

Query: 463 LLPDMEEK 470
           L+ ++ EK
Sbjct: 384 LIREIREK 391



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/201 (21%), Positives = 91/201 (45%), Gaps = 37/201 (18%)

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
            +++  L+   C +  +D+A + F  ++ +G  P T + N ++   S++ ++E A   Y 
Sbjct: 155 TILFDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYA 214

Query: 374 EMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
           +M  M ++                       ++  FN +++ LCK  +L+ A      + 
Sbjct: 215 DMYRMEIKS----------------------NVYTFNIMINVLCKEGKLKKAKGFLGIME 252

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-----------IRECL----KAI 478
            +G +P +VTY  ++ G  + G IE A  ++ +M+ K           I   +    +A 
Sbjct: 253 VFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRAS 312

Query: 479 ELLHKMAKRYVKPDEITVSIL 499
           E+L +M +  + PD ++ +IL
Sbjct: 313 EVLREMKEIGLVPDSVSYNIL 333


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/414 (24%), Positives = 184/414 (44%), Gaps = 32/414 (7%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLL-GALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           DA+  F+ M      P   ++N+++ G + G      F  L +++   GL P+ ++ N+L
Sbjct: 218 DAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFR-LRDQMVCHGLKPNAITYNVL 276

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           ++  C+   + +    L  +  +   PD  T   L  GL   G       LF K++    
Sbjct: 277 LSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGV 336

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
               I +  C + +++GLCKDG V+    +   +   G+ P   +YN+LI  YC     E
Sbjct: 337 ---TIGDYTC-SILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELE 392

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
            A          H               PD ++Y ++IN LCK   +  A++L ++M+  
Sbjct: 393 GAFSTFGQMKSRH-------------IKPDHITYNALINGLCKAERITNAQDLLMEMQDN 439

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G+ P V  +++LID Y   G+++    +   ++  G  P+  SY +++N++ K  K+ EA
Sbjct: 440 GVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEA 499

Query: 369 LSLYGEMISMGVRPD----NSCILEAAE---------LFRTLHNTKFELDLTVFNCLVDG 415
           +++  +M    V P+    N+ I    E         L   + +      +  +N L+ G
Sbjct: 500 VAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKG 559

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           LC   ++  A E+   L  +   P+ V+Y  +I   C  G I+KA DL   M +
Sbjct: 560 LCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHK 613



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 169/386 (43%), Gaps = 45/386 (11%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+  S N+++    +     DA      +  +   P+ +T   +I G    G       L
Sbjct: 198 PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 257

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             + V    +PN I     Y  ++ GLC+ G + +   L  +M  + + PD F Y+ L  
Sbjct: 258 RDQMVCHGLKPNAI----TYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILF- 312

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII-NSLCKDVLVDKA 298
                 +     G++ A L L  +++     +G          CSI+ N LCKD  V  A
Sbjct: 313 ------DGLSRNGDSKAMLSLFGKYLKNGVTIGDYT-------CSILLNGLCKDGKVSIA 359

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
           +E+   + + G++P  V+Y++LI+GYC  G ++ A   F  ++S    PD  +YN LIN 
Sbjct: 360 EEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALING 419

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
             K E++  A  L  EM   GV P                       +  FN L+D   +
Sbjct: 420 LCKAERITNAQDLLMEMQDNGVNP----------------------TVETFNTLIDAYGR 457

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAI 478
           + +L   + +  ++   G +PNVV+Y  ++   C  G I +A  +L DM  K  + L   
Sbjct: 458 TGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHK--DVLPNA 515

Query: 479 ELLHKMAKRYVK--PDEITVSILEEL 502
           ++ + +   YV+  P++    ++E++
Sbjct: 516 QVYNAIIDAYVEHGPNDQAFILVEKM 541



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 158/364 (43%), Gaps = 47/364 (12%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           + L   GL+P  V  N L+N +C+   +  AF   G++  +   PD +T   LI GLC  
Sbjct: 364 QSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKA 423

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
            + T A  L  +         V P V  + ++ID   + G + K  ++  +M+  G+ P+
Sbjct: 424 ERITNAQDLLMEMQ----DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPN 479

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS----YCSII 286
              Y S++  +C         G    A+ + ++            H DVL     Y +II
Sbjct: 480 VVSYGSIVNAFC-------KNGKIPEAVAILDDMF----------HKDVLPNAQVYNAII 522

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           ++  +    D+A  L   MKS GI P +V Y+ LI G C   +I +A ++  S+ +   I
Sbjct: 523 DAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLI 582

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406
           PD  SYNTLI++      +++AL L   M   G++             RT H        
Sbjct: 583 PDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIK----------STVRTYHQ------- 625

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
                L+ GL  + RL     L++K+ +    P+   + +M+      G   KA DL  +
Sbjct: 626 -----LISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKE 680

Query: 467 MEEK 470
           M +K
Sbjct: 681 MLQK 684



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 131/311 (42%), Gaps = 17/311 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           EL  A   F  M      P   ++N+L+  L   +   N   L   +   G+ P   + N
Sbjct: 390 ELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFN 449

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ + +   +   F+ L  +      P+VV+ G ++   C  GK  EA  +       
Sbjct: 450 TLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHK 509

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           D    V+PN   Y +IID   + G  ++  +L   MK  GI P    YN LI+  C    
Sbjct: 510 D----VLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQ 565

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
             +A           EE +N      +I  PD +SY ++I++ C    +DKA +L   M 
Sbjct: 566 ISEA-----------EEIINSLSNHRLI--PDAVSYNTLISACCYRGNIDKALDLQQRMH 612

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
             GI   V  Y  LI G    GR+++   L+  +     +P  + +N ++ +YSK     
Sbjct: 613 KYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEI 672

Query: 367 EALSLYGEMIS 377
           +A  L  EM+ 
Sbjct: 673 KAEDLRKEMLQ 683



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 105/243 (43%), Gaps = 33/243 (13%)

Query: 294 LVDKAKELFLDM--KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
           L D A  L  D+  ++R  +P +   + L++    +GR  D R+ F  + S G  PDT +
Sbjct: 107 LPDGALRLLSDLADEARAPLPSLSSCNLLLEALLSLGRHADVRRAFGILASAGARPDTFA 166

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL--------------EAAELFRTL 397
           +N  + +      + EA+ +   M   G  P N+                 +A E+F  +
Sbjct: 167 WNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEM 226

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                  +   +N ++DG  K   L + + L  ++  +G +PN +TY V++ GLC  G +
Sbjct: 227 TERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRM 286

Query: 458 EKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLP 517
            +                    LL +MA + + PD  T SIL + L+++ +    ++L  
Sbjct: 287 GETS-----------------ALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFG 329

Query: 518 SFL 520
            +L
Sbjct: 330 KYL 332


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 161/335 (48%), Gaps = 41/335 (12%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL+ D ++ N L++  CK   V + F     +++K   PD+ T   L+ GLC   K  EA
Sbjct: 531 GLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEA 590

Query: 177 SGLFTKFVAFDCRPN-VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
           S L+      +C+ N  +PNV  Y  +IDG CK   V +   L  ++  + +  ++ VYN
Sbjct: 591 SRLW-----HECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYN 645

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           SLIR YC         GN +AA  L ++        GV+      +Y S+++ LC   LV
Sbjct: 646 SLIRAYC-------INGNMNAAFRLRDDM----KSRGVLL--SCATYSSLMHGLCNIGLV 692

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           D AK L  +M+  G++P+VV Y+++I GY  +G+++    +   + S    P+  +Y  +
Sbjct: 693 DDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIM 752

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDG 415
           I+ + K+ K +EA  L  EM   G+ P                      D   +N   +G
Sbjct: 753 IDGFCKLGKTKEAAKLLNEMTEKGILP----------------------DAVTYNAFTNG 790

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
           LCK  ++  A+++  ++       + +TYT +I G
Sbjct: 791 LCKEGKVEEAFKVCDEMSSGAVCLDEITYTTLIDG 825



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 110/400 (27%), Positives = 181/400 (45%), Gaps = 45/400 (11%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKK-YYVNFICLSERLNTIGLLPDFVSLNI 127
           AL F   M+     P      +L+  L  AGK+   V   C   RL   G +P+ V+ N 
Sbjct: 450 ALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWC---RLLGKGFVPNIVTSNA 506

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++  CK   + +    L  +L +    D +T   LI G C +GK  E   L  + V   
Sbjct: 507 LIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMV--- 563

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            +  + P++  +  ++ GLC    +++   L+ + K  G  P+ + Y  +I  YC A   
Sbjct: 564 -KKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKV 622

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           E+ +        L  E V+   EL  +       Y S+I + C +  ++ A  L  DMKS
Sbjct: 623 EEGE-------NLLNELVSKKLELNSVV------YNSLIRAYCINGNMNAAFRLRDDMKS 669

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           RG++     YSSL+ G C +G +DDA+ L   +  EG +P+   Y T+I  YSK+ ++ +
Sbjct: 670 RGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNK 729

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
              +  EM S  + P+                 KF      +  ++DG CK  + + A +
Sbjct: 730 VNIVLQEMSSHNIHPN-----------------KF-----TYTIMIDGFCKLGKTKEAAK 767

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           L  ++   G  P+ VTY     GLC EG +E+A+ +  +M
Sbjct: 768 LLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKVCDEM 807



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 118/445 (26%), Positives = 186/445 (41%), Gaps = 95/445 (21%)

Query: 90  FNSLLGALAGKKYY--VNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGR 147
            +SL+ A   KK Y   +FICL       G++PD    + ++N FCK     DA     +
Sbjct: 228 LSSLVKANELKKSYEVYDFICLG------GIIPDVHLFSTMINAFCKGHREDDAIGLFSK 281

Query: 148 ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI-------------- 193
           + +   +P+VVT   +I GLC  G+  EA     K V     P++I              
Sbjct: 282 MEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFINGLIKLEK 341

Query: 194 -----------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
                            PN + Y ++IDG CK G +++   +  DM  +GI P++   NS
Sbjct: 342 IDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNS 401

Query: 237 LIRVYC----------------------------CAVNWEDAKGNTSAALELHEEFVNGN 268
           LI+ +C                              +NW   K     AL    E +  N
Sbjct: 402 LIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLKFRFVTALHFIREMLLRN 461

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                   P+     ++++ LCK     +A EL+  +  +G +P++V  ++LI G C  G
Sbjct: 462 ------LRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAG 515

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL 388
            + +  KL   +   G + D  +YNTLI+   K  KV+E   L  EM+  G++P      
Sbjct: 516 NMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQP------ 569

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
                           D+  FN L+ GLC + ++  A  L+ +  + G  PNV TY VMI
Sbjct: 570 ----------------DIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMI 613

Query: 449 CGLCIEGGIEKAYDLLPDMEEKIRE 473
            G C    +E+  +LL ++  K  E
Sbjct: 614 DGYCKANKVEEGENLLNELVSKKLE 638



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 110/407 (27%), Positives = 183/407 (44%), Gaps = 51/407 (12%)

Query: 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
           K +G   A      + +K   P + T   L+  L    +  ++  ++     F C   +I
Sbjct: 198 KHLGFGFAADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYD----FICLGGII 253

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P+V  ++++I+  CK    +    LF  M+  G+ P+   YN++I   C         G 
Sbjct: 254 PDVHLFSTMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLC-------KSGR 306

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
              A    E+ V           P +++Y   IN L K   +D+A  +  +M   G +P+
Sbjct: 307 LDEAYRFKEKMVKEK------VSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPN 360

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
            VVY++LIDGYC MG I +A K+   + S+G  P++ + N+LI  + K +++ +A ++  
Sbjct: 361 EVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLE 420

Query: 374 EMISMGVRPDNS----------CI----LEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
           EMI  G+ P N           C+    + A    R +       +  +   LV GLCK+
Sbjct: 421 EMIGRGL-PINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKA 479

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK--------- 470
            +   A EL+ +L   G  PN+VT   +I GLC  G +++   LL DM E+         
Sbjct: 480 GKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITY 539

Query: 471 ---IRECLK------AIELLHKMAKRYVKPDEITVS-ILEELLNKDE 507
              I  C K        EL  +M K+ ++PD  T + +L  L N D+
Sbjct: 540 NTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADK 586



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 104/418 (24%), Positives = 181/418 (43%), Gaps = 34/418 (8%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +++AL   + M+    +P   + NSL+              + E +   GL  +  S ++
Sbjct: 377 ISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSM 436

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++N  C       A   +  +L +   P+   L  L+ GLC  GK  EA  L+ + +   
Sbjct: 437 VINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLG-- 494

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
                +PN++   ++I GLCK G + +   L  DM  RG+  D   YN+LI   CC    
Sbjct: 495 --KGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLIS-GCCK--- 548

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
              +G      EL EE V           PD+ ++  +++ LC    +D+A  L+ + K 
Sbjct: 549 ---EGKVKEGFELKEEMVKKG------IQPDIYTFNLLLHGLCNADKIDEASRLWHECKK 599

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            G +P+V  Y  +IDGYC   ++++   L   + S+    ++  YN+LI +Y     +  
Sbjct: 600 NGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNA 659

Query: 368 ALSLYGEMISMGVRPDNSC---------------ILEAAELFRTLHNTKFELDLTVFNCL 412
           A  L  +M S GV    SC               + +A  L   +       ++  +  +
Sbjct: 660 AFRLRDDMKSRGVLL--SCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTI 717

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           + G  K  ++     + +++  +   PN  TYT+MI G C  G  ++A  LL +M EK
Sbjct: 718 IGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEK 775



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 8/140 (5%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALA--GKKYYVNFICLSERLNTIGLLPDFVSL 125
           ++DA    + M      P +  + +++G  +  G+   VN +   + +++  + P+  + 
Sbjct: 692 VDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVL--QEMSSHNIHPNKFTY 749

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
            I+++ FCK+    +A   L  +  K   PD VT      GLC +GK  EA  +  +  +
Sbjct: 750 TIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKVCDEMSS 809

Query: 186 FDCRPNVIPNVICYASIIDG 205
                 V  + I Y ++IDG
Sbjct: 810 ----GAVCLDEITYTTLIDG 825


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/414 (24%), Positives = 184/414 (44%), Gaps = 32/414 (7%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLL-GALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           DA+  F+ M      P   ++N+++ G + G      F  L +++   GL P+ ++ N+L
Sbjct: 81  DAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGF-RLRDQMVCHGLKPNAITYNVL 139

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           ++  C+   + +    L  +  +   PD  T   L  GL   G       LF K++    
Sbjct: 140 LSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGV 199

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
               I +  C + +++GLCKDG V+    +   +   G+ P   +YN+LI  YC     E
Sbjct: 200 ---TIGDYTC-SILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELE 255

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
            A          H               PD ++Y ++IN LCK   +  A++L ++M+  
Sbjct: 256 GAFSTFGQMKSRH-------------IKPDHITYNALINGLCKAERITNAQDLLMEMQDN 302

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G+ P V  +++LID Y   G+++    +   ++  G  P+  SY +++N++ K  K+ EA
Sbjct: 303 GVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEA 362

Query: 369 LSLYGEMISMGVRPD----NSCILEAAE---------LFRTLHNTKFELDLTVFNCLVDG 415
           +++  +M    V P+    N+ I    E         L   + +      +  +N L+ G
Sbjct: 363 VAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKG 422

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           LC   ++  A E+   L  +   P+ V+Y  +I   C  G I+KA DL   M +
Sbjct: 423 LCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHK 476



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 169/386 (43%), Gaps = 45/386 (11%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+  S N+++    +     DA      +  +   P+ +T   +I G    G       L
Sbjct: 61  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 120

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             + V    +PN I     Y  ++ GLC+ G + +   L  +M  + + PD F Y+ L  
Sbjct: 121 RDQMVCHGLKPNAI----TYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILF- 175

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII-NSLCKDVLVDKA 298
                 +     G++ A L L  +++     +G          CSI+ N LCKD  V  A
Sbjct: 176 ------DGLSRNGDSKAMLSLFGKYLKNGVTIGDYT-------CSILLNGLCKDGKVSIA 222

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
           +E+   + + G++P  V+Y++LI+GYC  G ++ A   F  ++S    PD  +YN LIN 
Sbjct: 223 EEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALING 282

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
             K E++  A  L  EM   GV P                       +  FN L+D   +
Sbjct: 283 LCKAERITNAQDLLMEMQDNGVNP----------------------TVETFNTLIDAYGR 320

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAI 478
           + +L   + +  ++   G +PNVV+Y  ++   C  G I +A  +L DM  K  + L   
Sbjct: 321 TGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHK--DVLPNA 378

Query: 479 ELLHKMAKRYVK--PDEITVSILEEL 502
           ++ + +   YV+  P++    ++E++
Sbjct: 379 QVYNAIIDAYVEHGPNDQAFILVEKM 404



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 158/364 (43%), Gaps = 47/364 (12%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           + L   GL+P  V  N L+N +C+   +  AF   G++  +   PD +T   LI GLC  
Sbjct: 227 QSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKA 286

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
            + T A  L  +         V P V  + ++ID   + G + K  ++  +M+  G+ P+
Sbjct: 287 ERITNAQDLLMEMQ----DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPN 342

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS----YCSII 286
              Y S++  +C         G    A+ + ++            H DVL     Y +II
Sbjct: 343 VVSYGSIVNAFC-------KNGKIPEAVAILDDMF----------HKDVLPNAQVYNAII 385

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           ++  +    D+A  L   MKS GI P +V Y+ LI G C   +I +A ++  S+ +   I
Sbjct: 386 DAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLI 445

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406
           PD  SYNTLI++      +++AL L   M   G++             RT H        
Sbjct: 446 PDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIK----------STVRTYHQ------- 488

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
                L+ GL  + RL     L++K+ +    P+   + +M+      G   KA DL  +
Sbjct: 489 -----LISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKE 543

Query: 467 MEEK 470
           M +K
Sbjct: 544 MLQK 547



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 131/311 (42%), Gaps = 17/311 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           EL  A   F  M      P   ++N+L+  L   +   N   L   +   G+ P   + N
Sbjct: 253 ELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFN 312

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ + +   +   F+ L  +      P+VV+ G ++   C  GK  EA  +       
Sbjct: 313 TLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHK 372

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           D    V+PN   Y +IID   + G  ++  +L   MK  GI P    YN LI+  C    
Sbjct: 373 D----VLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQ 428

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
             +A           EE +N      +I  PD +SY ++I++ C    +DKA +L   M 
Sbjct: 429 ISEA-----------EEIINSLSNHRLI--PDAVSYNTLISACCYRGNIDKALDLQQRMH 475

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
             GI   V  Y  LI G    GR+++   L+  +     +P  + +N ++ +YSK     
Sbjct: 476 KYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEI 535

Query: 367 EALSLYGEMIS 377
           +A  L  EM+ 
Sbjct: 536 KAEDLRKEMLQ 546



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 89/208 (42%), Gaps = 31/208 (14%)

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC 386
           +GR  D R+ F  + S G  PDT ++N  + +      + EA+ +   M   G  P N+ 
Sbjct: 5   LGRHADVRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAF 64

Query: 387 IL--------------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
                           +A E+F  +       +   +N ++DG  K   L + + L  ++
Sbjct: 65  SYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQM 124

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPD 492
             +G +PN +TY V++ GLC  G + +                    LL +MA + + PD
Sbjct: 125 VCHGLKPNAITYNVLLSGLCRAGRMGETS-----------------ALLDEMASQKMVPD 167

Query: 493 EITVSILEELLNKDENCHECMNLLPSFL 520
             T SIL + L+++ +    ++L   +L
Sbjct: 168 GFTYSILFDGLSRNGDSKAMLSLFGKYL 195


>gi|255556314|ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541506|gb|EEF43055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 719

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 167/359 (46%), Gaps = 30/359 (8%)

Query: 91  NSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILR 150
           ++LL  L+ K        L ++   IG  PD  + NI MNC  K   +++    L R + 
Sbjct: 361 DTLLCCLSSKNMAREAGALLKKFGKIGHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVE 420

Query: 151 KVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDG 210
           +       T   LI+ L M GK TE +  F + V    +  ++ NV  Y  +ID  CK  
Sbjct: 421 QGMKFGFSTYLALIKALYMAGKVTEGNHYFNQMV----KDGLLCNVCSYNMVIDCFCKTS 476

Query: 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGE 270
            ++K    F +M+ +GI P+   +N+LI  YC     E  K      + L   F      
Sbjct: 477 MMDKATNTFKEMQYKGIPPNLVTFNTLIDGYC--KGGEICKSRDLLVMLLEHGF------ 528

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
                 PD+ ++ SII+ LC+   ++ A   F +M   G+ P+ V Y+ LI   C++G +
Sbjct: 529 -----KPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDV 583

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL-- 388
             + KL   ++++G  PD  S+N LI S+ ++ KVE+A  L+  M+S+G+ PDN   +  
Sbjct: 584 PRSMKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAF 643

Query: 389 -----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
                      EA ELF ++       D    N ++D L K  +  +A ++ K    +G
Sbjct: 644 IKVFCQSGRFNEAKELFLSMEANGCMPDSFTCNIILDALVKQDQFEAAQKIAKTCSEWG 702



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 175/397 (44%), Gaps = 43/397 (10%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L +++  +G  P+  +  IL++ F     V +AF  L  +  +  SP   T+   I G+ 
Sbjct: 274 LVKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRVLETMKARKVSPSEATIRSFIHGVF 333

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
                 +A  L  +F+    R  V+  + C  +++  L       +   L       G  
Sbjct: 334 RCVAPNKAFELAIEFIE---REPVLQRLAC-DTLLCCLSSKNMAREAGALLKKFGKIGHK 389

Query: 229 PDAFVYN----SLIRVY-----CCAVNWEDAKGNTSA---------ALELHEEFVNGNGE 270
           PD+  +N     LI+ +     C  ++    +G             AL +  +   GN  
Sbjct: 390 PDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIKALYMAGKVTEGNHY 449

Query: 271 L------GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
                  G++C  +V SY  +I+  CK  ++DKA   F +M+ +GI P++V +++LIDGY
Sbjct: 450 FNQMVKDGLLC--NVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGY 507

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD- 383
           C  G I  +R L V +   G  PD  +++++I+   + +++E+AL  + EM+  G+ P+ 
Sbjct: 508 CKGGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNA 567

Query: 384 --------NSCIL----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
                   + CI+     + +L R +       D+  FN L+   C+  ++  A +LF  
Sbjct: 568 VTYNILIHSLCIIGDVPRSMKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSS 627

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +   G  P+  TY   I   C  G   +A +L   ME
Sbjct: 628 MLSLGLIPDNYTYVAFIKVFCQSGRFNEAKELFLSME 664



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 90/400 (22%), Positives = 162/400 (40%), Gaps = 55/400 (13%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           +++ +G+ P     N +++   K   +  A++   ++      PD  T   LI G+C  G
Sbjct: 207 QISFLGISPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGVCRSG 266

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
              EA  L  +           PNV  Y  +IDG      V++   +   MK R + P  
Sbjct: 267 VVDEALRLVKQMEGL----GYSPNVFTYTILIDGFFNAKKVDEAFRVLETMKARKVSPSE 322

Query: 232 FVYNSLIR-VYCCAVNWEDAKGNTSAALELHEEFVNGN---------------------- 268
               S I  V+ C           + A EL  EF+                         
Sbjct: 323 ATIRSFIHGVFRCVA--------PNKAFELAIEFIEREPVLQRLACDTLLCCLSSKNMAR 374

Query: 269 ------GELGVICH-PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
                  + G I H PD  ++   +N L K   +++   +      +G+      Y +LI
Sbjct: 375 EAGALLKKFGKIGHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALI 434

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
               + G++ +    F  +  +G + +  SYN +I+ + K   +++A + + EM   G+ 
Sbjct: 435 KALYMAGKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIP 494

Query: 382 P---------DNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
           P         D  C    I ++ +L   L    F+ D+  F+ ++DGLC++ ++  A   
Sbjct: 495 PNLVTFNTLIDGYCKGGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGC 554

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           F ++  +G  PN VTY ++I  LCI G + ++  LL  M+
Sbjct: 555 FSEMVMWGLSPNAVTYNILIHSLCIIGDVPRSMKLLRKMQ 594



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 104/261 (39%), Gaps = 40/261 (15%)

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
           C +I S  +  L     E+F  +   GI P   +Y+++ID       +D A   F  + +
Sbjct: 186 CILIGSWGRLGLAKYCDEIFGQISFLGISPSTRLYNAVIDALVKSNSLDLAYLKFQQMSA 245

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF 402
           + C PD  +YN LI+   +   V+EAL L  +M  +G  P                    
Sbjct: 246 DNCKPDRFTYNILIHGVCRSGVVDEALRLVKQMEGLGYSP-------------------- 285

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
             ++  +  L+DG   + ++  A+ + + +      P+  T    I G+       KA++
Sbjct: 286 --NVFTYTILIDGFFNAKKVDEAFRVLETMKARKVSPSEATIRSFIHGVFRCVAPNKAFE 343

Query: 463 LLPDMEEK-----------IRECL-------KAIELLHKMAKRYVKPDEITVSILEELLN 504
           L  +  E+           +  CL       +A  LL K  K   KPD  T +I    L 
Sbjct: 344 LAIEFIEREPVLQRLACDTLLCCLSSKNMAREAGALLKKFGKIGHKPDSATFNIAMNCLI 403

Query: 505 KDENCHECMNLLPSFLSRNQE 525
           K  + +E  N+L  F+ +  +
Sbjct: 404 KGFDLNEVCNILDRFVEQGMK 424



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 22/171 (12%)

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           EL  D+K+ G   +  +   LI  +  +G      ++F  I   G  P T  YN +I++ 
Sbjct: 168 ELLKDIKASGYRINEELLCILIGSWGRLGLAKYCDEIFGQISFLGISPSTRLYNAVIDAL 227

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            K   ++ A   + +M +   +PD                         +N L+ G+C+S
Sbjct: 228 VKSNSLDLAYLKFQQMSADNCKPDR----------------------FTYNILIHGVCRS 265

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
             +  A  L K++   G  PNV TYT++I G      +++A+ +L  M+ +
Sbjct: 266 GVVDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRVLETMKAR 316


>gi|125524465|gb|EAY72579.1| hypothetical protein OsI_00445 [Oryza sativa Indica Group]
          Length = 1014

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 193/412 (46%), Gaps = 47/412 (11%)

Query: 116 IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
           +G +P   + + +++   K   V +AF    ++      P+V     LI  LC   +F +
Sbjct: 297 LGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDD 356

Query: 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
           A  LF +         + PN + YA +I  LCK G +     LF  M+ +GI    + YN
Sbjct: 357 ADRLFKEMAG----RGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYN 412

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           SLI  YC   + + A+G            ++G  + G+   P   SY  +I  LC++  +
Sbjct: 413 SLINGYCKQGSLDRARG-----------LLSGMVKEGLT--PTAASYSPLIAGLCRNGDL 459

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
             A EL  +M  RGI  +   +++LI+G+C   ++D+A +LF  +     IP+  ++N +
Sbjct: 460 SSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVM 519

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKF 402
           I  Y  +  + +A  LY +M+ MG++PDN             S + +A E    L N+  
Sbjct: 520 IEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYA 579

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
            L+      L+ GL +  R    + L+ ++   G + ++V++T+++            Y 
Sbjct: 580 VLNNFSLTALLYGLFREGRFTETYHLWDEMAVRGVKLDLVSFTIIV------------YA 627

Query: 463 LLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMN 514
            L    +K + C+    L  +M ++ VKPD+I  + + + L+K+EN  + +N
Sbjct: 628 ALKQ-HDKEKSCV----LFREMKEQGVKPDDIFYTCMIDALSKEENMIQALN 674



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 171/370 (46%), Gaps = 30/370 (8%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           R+ + G+    V  N+LM   CK + V +A      ++    + D VT   L+ G C   
Sbjct: 223 RMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRME 282

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
           +   A  +    +    R   +P+    + +ID L K   V +   L   +   G+ P+ 
Sbjct: 283 ELEMALRITHDMI----RLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNV 338

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
           F YN+LI   C    ++DA         L +E   G G       P+ ++Y  +I++LCK
Sbjct: 339 FAYNALIDKLCKNERFDDAD-------RLFKEMA-GRG-----LEPNEVTYAILIHALCK 385

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
             +++ A  LF  M+ +GI   V  Y+SLI+GYC  G +D AR L   +  EG  P  +S
Sbjct: 386 RGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAAS 445

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL-------------EAAELFRTLH 398
           Y+ LI    +   +  A+ L+ EM   G+  +N                 EAA LF  + 
Sbjct: 446 YSPLIAGLCRNGDLSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMI 505

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
           ++    +   FN +++G C    +R A++L+ ++   G +P+  TY  +I GLC+  G+ 
Sbjct: 506 DSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVS 565

Query: 459 KAYDLLPDME 468
           KA + + D+E
Sbjct: 566 KANEFVADLE 575



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 117/440 (26%), Positives = 190/440 (43%), Gaps = 40/440 (9%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G +E  DALC F+ M        +  +NSL+     +        L   +   GL P 
Sbjct: 385 KRGMIE--DALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPT 442

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             S + L+   C+   +S A      +  +  + +  T   LI G C   K  EA+ LF 
Sbjct: 443 AASYSPLIAGLCRNGDLSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFD 502

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           K +      NVIPN + +  +I+G C  G + K   L+  M   G+ PD + Y SLI   
Sbjct: 503 KMI----DSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGL 558

Query: 242 CCAVNWEDAK-------------GNTSAALELHEEFVNGN--------GELGVI-CHPDV 279
           C       A               N S    L+  F  G          E+ V     D+
Sbjct: 559 CLTSGVSKANEFVADLENSYAVLNNFSLTALLYGLFREGRFTETYHLWDEMAVRGVKLDL 618

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           +S+  I+ +  K    +K+  LF +MK +G+ PD + Y+ +ID       +  A   +  
Sbjct: 619 VSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQ 678

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---SCILEA------ 390
           +  +G  P+T ++  LIN+  K   +  A  L  EM++  V P+    +C L+       
Sbjct: 679 MVIDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGD 738

Query: 391 AELFRTLHNTKFELDLTV---FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
            E  + LH+   +  L     FN L+ GLCK+ +++ A +L +K+   G  P+ ++Y+ +
Sbjct: 739 MEKAKDLHSAMLQGHLASIVSFNILIKGLCKAGKIQEAIDLMRKITESGFSPDCISYSTI 798

Query: 448 ICGLCIEGGIEKAYDLLPDM 467
           I  LC  G I KA++L  +M
Sbjct: 799 IHELCKMGDINKAFELWNEM 818



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 122/256 (47%), Gaps = 35/256 (13%)

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
            R LF  M   G++ D +VY + IR YC + N + A+G     + +  E V  +      
Sbjct: 182 ARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARG---LVVRMESEGVKASA----- 233

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
                + Y  ++  LCK++ V +A E+   M + G+  D V Y +L+ G+C M  ++ A 
Sbjct: 234 -----VPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMAL 288

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
           ++   +   G +P  ++ + +I+   K E VEEA SL  ++  +G+ P            
Sbjct: 289 RITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVP------------ 336

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
                     ++  +N L+D LCK+ R   A  LFK++   G EPN VTY ++I  LC  
Sbjct: 337 ----------NVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKR 386

Query: 455 GGIEKAYDLLPDMEEK 470
           G IE A  L   M +K
Sbjct: 387 GMIEDALCLFDKMRDK 402



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 131/295 (44%), Gaps = 18/295 (6%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           S  +LL  L  +  +     L + +   G+  D VS  I++    K      + V    +
Sbjct: 585 SLTALLYGLFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREM 644

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
             +   PD +   C+I  L  +    +A   + + V     PN + + +    +I+ LCK
Sbjct: 645 KEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVIDGYSPNTVTHTV----LINNLCK 700

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
            G++    +L  +M    + P+ F YN       C +++   +G+   A +LH   + G+
Sbjct: 701 SGYLGSAELLCKEMLAGNVLPNKFTYN-------CFLDYFATEGDMEKAKDLHSAMLQGH 753

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                     ++S+  +I  LCK   + +A +L   +   G  PD + YS++I   C MG
Sbjct: 754 -------LASIVSFNILIKGLCKAGKIQEAIDLMRKITESGFSPDCISYSTIIHELCKMG 806

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            I+ A +L+  +  +G  PD  +YN  I   +   + ++AL +Y  MI  GV+P+
Sbjct: 807 DINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPN 861



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 175/402 (43%), Gaps = 35/402 (8%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++++A   F+ MI     P   +FN ++              L +++  +GL PD  +  
Sbjct: 493 KMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYR 552

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++  C   GVS A   +  +       +  +L  L+ GL  +G+FTE   L+ +    
Sbjct: 553 SLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGLFREGRFTETYHLWDEMAVR 612

Query: 187 DCRPNVIP-NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
             + +++   +I YA++     K     K  VLF +MK +G+ PD   Y        C +
Sbjct: 613 GVKLDLVSFTIIVYAAL-----KQHDKEKSCVLFREMKEQGVKPDDIFYT-------CMI 660

Query: 246 NWEDAKGNTSAALELHEEFV-NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
           +    + N   AL   ++ V +G         P+ +++  +IN+LCK   +  A+ L  +
Sbjct: 661 DALSKEENMIQALNCWDQMVIDGYS-------PNTVTHTVLINNLCKSGYLGSAELLCKE 713

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M +  ++P+   Y+  +D +   G ++ A+ L  ++  +G +    S+N LI    K  K
Sbjct: 714 MLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAM-LQGHLASIVSFNILIKGLCKAGK 772

Query: 365 VEEALSLYGEMISMGVRPD---NSCIL----------EAAELFRTLHNTKFELDLTVFNC 411
           ++EA+ L  ++   G  PD    S I+          +A EL+  +     + D+  +N 
Sbjct: 773 IQEAIDLMRKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNI 832

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
            +           A  ++  + R G +PN  TY  ++ G+ +
Sbjct: 833 FIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGISL 874



 Score = 41.6 bits (96), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 75/209 (35%), Gaps = 39/209 (18%)

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           S GI  +    S ++     + +   AR LF  +   G   D   Y   I +Y +   ++
Sbjct: 156 SSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLD 215

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
            A  L   M S GV+                           +N L+ GLCK+ R++ A 
Sbjct: 216 GARGLVVRMESEGVKASA----------------------VPYNVLMYGLCKNMRVQEAV 253

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAK 486
           E+   +   G   + VTY  ++ G C                 ++ E   A+ + H M +
Sbjct: 254 EVKNVMVNIGVTADEVTYRTLVYGFC-----------------RMEELEMALRITHDMIR 296

Query: 487 RYVKPDEITVSILEELLNKDENCHECMNL 515
               P E   S + + L K E   E  +L
Sbjct: 297 LGFVPSEANCSFMIDELRKKELVEEAFSL 325


>gi|224144580|ref|XP_002325338.1| predicted protein [Populus trichocarpa]
 gi|222862213|gb|EEE99719.1| predicted protein [Populus trichocarpa]
          Length = 481

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 110/400 (27%), Positives = 187/400 (46%), Gaps = 47/400 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL+PD ++ N+++  FCK   +  A   L  +      PDV+T   +IR L   GKF +A
Sbjct: 87  GLVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRSLFDNGKFDQA 146

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD-GFVNKVRVLFLDMKGRGIYPDAFVYN 235
              +   +   C P +IP    Y  +I+ + K  G V  + VL  DM   G YPD   YN
Sbjct: 147 VEFWRGQLRRGCLPYLIP----YTILIELVWKHCGTVRALEVLE-DMAIEGCYPDLVTYN 201

Query: 236 SLIRVYCCAVNWEDAKGNTSAALE--LHEEFVNGNGELGVICH----------------- 276
           SL+        +EDA       L   +    +  N  L  +C                  
Sbjct: 202 SLVNFASKEGKYEDAALIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEILAIMKKT 261

Query: 277 ---PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
              P V++Y  +IN LCK  LV++A   F+ M S    PD++ Y++L+   C  G +D+A
Sbjct: 262 SHPPTVVTYNILINGLCKCGLVERAINFFVQMVSENCSPDIITYNTLLTALCKEGMVDEA 321

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN--------- 384
            ++FV +    C P   +YNT+I+  ++   ++EAL LY +MI  G+ PD          
Sbjct: 322 LQVFVLLSDSNCSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGIAPDGITHRSLVWG 381

Query: 385 ----SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL--PRYGPE 438
                 + +A E+ R +      ++ + +  +++GLC++ R+  A ++ + +   RY P+
Sbjct: 382 FCWIDQVEDAVEILREMGKRDHRINSSAYRLVINGLCRNKRVDIAIQVLEMMISGRYKPD 441

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAI 478
             +  Y+ +I  +   G +E+A +L   + E  R+ L+ I
Sbjct: 442 EEI--YSTLIKSVADAGMVEEADELHQKLIE--RKVLRTI 477



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 170/368 (46%), Gaps = 56/368 (15%)

Query: 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222
           ++  LC +G   EA    TK +    R N IPN  C  ++I GL + G + +   +   M
Sbjct: 28  ILHNLCKKGSLMEA----TKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRIERASRVLKTM 83

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF-VNGNGELGVICHPDVLS 281
              G+ PD   YN ++  +C        +    +A++L E+  ++G       C PDV++
Sbjct: 84  VMSGLVPDVITYNMMVGGFC-------KRRQLRSAIDLLEDMSLSG-------CPPDVIT 129

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID---GYCLMGRIDDARKLFV 338
           Y +II SL  +   D+A E +     RG +P ++ Y+ LI+    +C   R   A ++  
Sbjct: 130 YNTIIRSLFDNGKFDQAVEFWRGQLRRGCLPYLIPYTILIELVWKHCGTVR---ALEVLE 186

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN-----------SCI 387
            +  EGC PD  +YN+L+N  SK  K E+A  +   ++S G+ P+            SC 
Sbjct: 187 DMAIEGCYPDLVTYNSLVNFASKEGKYEDAALIIYNILSHGMEPNAITYNSLLHSLCSCG 246

Query: 388 L--EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
           L  E  E+   +  T     +  +N L++GLCK   +  A   F ++      P+++TY 
Sbjct: 247 LWDEVDEILAIMKKTSHPPTVVTYNILINGLCKCGLVERAINFFVQMVSENCSPDIITYN 306

Query: 446 VMICGLCIEGGIEKA------------------YDLLPDMEEKIRECLKAIELLHKMAKR 487
            ++  LC EG +++A                  Y+ + D   +     +A++L ++M ++
Sbjct: 307 TLLTALCKEGMVDEALQVFVLLSDSNCSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEK 366

Query: 488 YVKPDEIT 495
            + PD IT
Sbjct: 367 GIAPDGIT 374



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 156/363 (42%), Gaps = 57/363 (15%)

Query: 53  LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSER 112
           +++ L +N K      + A+ F+   +     P++  +  L+  +      V  + + E 
Sbjct: 133 IIRSLFDNGK-----FDQAVEFWRGQLRRGCLPYLIPYTILIELVWKHCGTVRALEVLED 187

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +   G  PD V+ N L+N   K     DA + +  IL     P+ +T   L+  LC  G 
Sbjct: 188 MAIEGCYPDLVTYNSLVNFASKEGKYEDAALIIYNILSHGMEPNAITYNSLLHSLCSCGL 247

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
           + E      + +A   + +  P V+ Y  +I+GLCK G V +    F+ M      PD  
Sbjct: 248 WDEVD----EILAIMKKTSHPPTVVTYNILINGLCKCGLVERAINFFVQMVSENCSPDII 303

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            YN+L+   C        +G    AL++     + N      C P +++Y ++I+ L + 
Sbjct: 304 TYNTLLTALC-------KEGMVDEALQVFVLLSDSN------CSPGLITYNTVIDGLTRR 350

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA------------------- 333
             +D+A +L+  M  +GI PD + + SL+ G+C + +++DA                   
Sbjct: 351 GYMDEALKLYNQMIEKGIAPDGITHRSLVWGFCWIDQVEDAVEILREMGKRDHRINSSAY 410

Query: 334 ----------RKLFVSIE------SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
                     +++ ++I+      S    PD   Y+TLI S +    VEEA  L+ ++I 
Sbjct: 411 RLVINGLCRNKRVDIAIQVLEMMISGRYKPDEEIYSTLIKSVADAGMVEEADELHQKLIE 470

Query: 378 MGV 380
             V
Sbjct: 471 RKV 473



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 116/295 (39%), Gaps = 40/295 (13%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+     ++I  L +   +++A  +   M   G++PDV+ Y+ ++ G+C   ++  A  L
Sbjct: 55  PNSTCSTNLIRGLVRIGRIERASRVLKTMVMSGLVPDVITYNMMVGGFCKRRQLRSAIDL 114

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP-------------D 383
              +   GC PD  +YNT+I S     K ++A+  +   +  G  P              
Sbjct: 115 LEDMSLSGCPPDVITYNTIIRSLFDNGKFDQAVEFWRGQLRRGCLPYLIPYTILIELVWK 174

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
           +   + A E+   +       DL  +N LV+   K  +   A  +   +  +G EPN +T
Sbjct: 175 HCGTVRALEVLEDMAIEGCYPDLVTYNSLVNFASKEGKYEDAALIIYNILSHGMEPNAIT 234

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMA 485
           Y  ++  LC  G  ++  ++L  M++                  K     +AI    +M 
Sbjct: 235 YNSLLHSLCSCGLWDEVDEILAIMKKTSHPPTVVTYNILINGLCKCGLVERAINFFVQMV 294

Query: 486 KRYVKPDEITVSILEELLNKDENCHECMNLL---------PSFLSRNQEESKLTR 531
                PD IT + L   L K+    E + +          P  ++ N     LTR
Sbjct: 295 SENCSPDIITYNTLLTALCKEGMVDEALQVFVLLSDSNCSPGLITYNTVIDGLTR 349



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 105/248 (42%), Gaps = 43/248 (17%)

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           I+++LCK   + +A +L   M     IP+    ++LI G   +GRI+ A ++  ++   G
Sbjct: 28  ILHNLCKKGSLMEATKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRIERASRVLKTMVMSG 87

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL 404
            +PD  +YN ++  + K  ++  A+ L  +M   G  P                      
Sbjct: 88  LVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPP---------------------- 125

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           D+  +N ++  L  + +   A E ++   R G  P ++ YT++I                
Sbjct: 126 DVITYNTIIRSLFDNGKFDQAVEFWRGQLRRGCLPYLIPYTILI---------------- 169

Query: 465 PDMEEKIREC--LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
              E   + C  ++A+E+L  MA     PD +T + L    +K+    +   ++ + LS 
Sbjct: 170 ---ELVWKHCGTVRALEVLEDMAIEGCYPDLVTYNSLVNFASKEGKYEDAALIIYNILSH 226

Query: 523 NQEESKLT 530
             E + +T
Sbjct: 227 GMEPNAIT 234


>gi|242084242|ref|XP_002442546.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
 gi|241943239|gb|EES16384.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
          Length = 735

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 115/441 (26%), Positives = 187/441 (42%), Gaps = 56/441 (12%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  PD    N+ +N       +  A     R+ R    PDVVT  CLI+GLC   +  +A
Sbjct: 191 GCAPDICICNMAVNVLVVAGRIDKALEFAERMRRVGVDPDVVTYNCLIKGLCGARRIVDA 250

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             + +  +   C    +P+ I Y +++  LCK+  V  V+ L   M   GI+PD   YN 
Sbjct: 251 LEMISSMLQNGC----LPDKISYFTVMSFLCKEKRVADVQNLLERMSDAGIFPDQVTYNM 306

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI             G+   AL    E        G     D + Y + ++S C +  + 
Sbjct: 307 LIHGLA-------KHGHADEALSFLRE------SEGKRFRVDEVGYSATVHSFCLNGRMA 353

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +AKE+  +M S+G  PDVV YS+++DG+C +G +D ARK+   +   GC P+T ++  L+
Sbjct: 354 EAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTALL 413

Query: 357 NSYSKIEKVEEALSLYGE--------------MISMGVRPDNSCILEAAELFRTLHNTKF 402
           N   K+ K  EA  L  +              ++  G R +   + E+ ++   +    F
Sbjct: 414 NGLCKVGKSSEAWELLNKSEEEWWTPSAITYSVVMHGFRREGK-LKESCDVVMQMLQKGF 472

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
                  N L+  LC   +   A +  ++    G   NVV +T +I G   +G +E A  
Sbjct: 473 FPTTVEINLLIHALCNERKPADAKDFMEQCQSKGCFINVVNFTTVIHGFSRQGDLESALS 532

Query: 463 LLPDM---------------------EEKIRECLKAIELLHKMAKRYVKPDEITVSILEE 501
           LL DM                     + K++E   A  L+ KM  R + P  +T   +  
Sbjct: 533 LLDDMYLTNRHPDVVTYTVVVDALGRKGKMKE---ATSLVEKMLNRGLHPTPVTYRTVIH 589

Query: 502 LLNKDENCHECMNLLPSFLSR 522
              +     + +NLL   L++
Sbjct: 590 RYCEKGAVEDLLNLLDKMLAK 610



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 93/411 (22%), Positives = 173/411 (42%), Gaps = 47/411 (11%)

Query: 64  GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV 123
           G   + DAL   + M+     P   S+ +++  L  +K   +   L ER++  G+ PD V
Sbjct: 243 GARRIVDALEMISSMLQNGCLPDKISYFTVMSFLCKEKRVADVQNLLERMSDAGIFPDQV 302

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           + N+L++   K     +A   L     K F  D V     +   C+ G+  EA  +  + 
Sbjct: 303 TYNMLIHGLAKHGHADEALSFLRESEGKRFRVDEVGYSATVHSFCLNGRMAEAKEIIGEM 362

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
           ++  CRP+V+     Y++++DG C+ G +++ R +   M   G  P+   + +L+   C 
Sbjct: 363 ISKGCRPDVVT----YSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTALLNGLCK 418

Query: 244 AVNWEDAKGNTSAALEL----HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
                   G +S A EL     EE+            P  ++Y  +++   ++  + ++ 
Sbjct: 419 V-------GKSSEAWELLNKSEEEWWT----------PSAITYSVVMHGFRREGKLKESC 461

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           ++ + M  +G  P  V  + LI   C   +  DA+      +S+GC  +  ++ T+I+ +
Sbjct: 462 DVVMQMLQKGFFPTTVEINLLIHALCNERKPADAKDFMEQCQSKGCFINVVNFTTVIHGF 521

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
           S+   +E ALSL  +M      PD        +                       L + 
Sbjct: 522 SRQGDLESALSLLDDMYLTNRHPDVVTYTVVVD----------------------ALGRK 559

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            +++ A  L +K+   G  P  VTY  +I   C +G +E   +LL  M  K
Sbjct: 560 GKMKEATSLVEKMLNRGLHPTPVTYRTVIHRYCEKGAVEDLLNLLDKMLAK 610



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 95/228 (41%), Gaps = 39/228 (17%)

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           L +  L D A+ +   M  RG+      ++ L+  Y   G++  A ++   ++ +GC PD
Sbjct: 136 LSRTRLHDPARRVMRLMIRRGMPRGTRQFAHLMLSYSRAGKLRSAMRVLQLMQKDGCAPD 195

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTV 408
               N  +N      ++++AL     M  +GV P                      D+  
Sbjct: 196 ICICNMAVNVLVVAGRIDKALEFAERMRRVGVDP----------------------DVVT 233

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +NCL+ GLC + R+  A E+   + + G  P+ ++Y  ++  LC E  +    +      
Sbjct: 234 YNCLIKGLCGARRIVDALEMISSMLQNGCLPDKISYFTVMSFLCKEKRVADVQN------ 287

Query: 469 EKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                      LL +M+   + PD++T ++L   L K  +  E ++ L
Sbjct: 288 -----------LLERMSDAGIFPDQVTYNMLIHGLAKHGHADEALSFL 324



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/282 (20%), Positives = 103/282 (36%), Gaps = 70/282 (24%)

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M+  G  PD+ + +  ++   + GRID A +    +   G  PD  +YN LI       +
Sbjct: 187 MQKDGCAPDICICNMAVNVLVVAGRIDKALEFAERMRRVGVDPDVVTYNCLIKGLCGARR 246

Query: 365 VEEALSLYGEMISMGVRPDNSCIL------------------------------------ 388
           + +AL +   M+  G  PD                                         
Sbjct: 247 IVDALEMISSMLQNGCLPDKISYFTVMSFLCKEKRVADVQNLLERMSDAGIFPDQVTYNM 306

Query: 389 ------------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
                       EA    R     +F +D   ++  V   C + R+  A E+  ++   G
Sbjct: 307 LIHGLAKHGHADEALSFLRESEGKRFRVDEVGYSATVHSFCLNGRMAEAKEIIGEMISKG 366

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAI 478
             P+VVTY+ ++ G C  G +++A  ++  M +                  K+ +  +A 
Sbjct: 367 CRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTALLNGLCKVGKSSEAW 426

Query: 479 ELLHKMAKRYVKPDEITVSILEELLNKD----ENCHECMNLL 516
           ELL+K  + +  P  IT S++     ++    E+C   M +L
Sbjct: 427 ELLNKSEEEWWTPSAITYSVVMHGFRREGKLKESCDVVMQML 468


>gi|255573471|ref|XP_002527661.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532966|gb|EEF34732.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 766

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 117/438 (26%), Positives = 190/438 (43%), Gaps = 64/438 (14%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFC-----KMIGVSDAFVALGRILRKVFSPDVVTLGCL 163
           L E L   G  P+  +  I+MN +C     K I +  A   L  +     SP VVT G  
Sbjct: 235 LFEELKDSGPSPNVFTYTIMMNYYCKGSFGKNIDIVKATEVLEEMEMNGESPTVVTYGAY 294

Query: 164 IRGLCMQGKFTEASGLFTKFVAFDCRPNVIP-NVICYASIIDGLCKDGFVNKVRVLFLDM 222
           I GLC  G    A  L       D R    P N  CY ++I   C++G +++   L  DM
Sbjct: 295 IHGLCRAGCVEFALRLIR-----DLRIRNQPLNSYCYNAVIHEFCRNGELHEAFELLEDM 349

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282
           +  GI P A+ Y+ LI   C        KG    AL+L EE V  N        P +++Y
Sbjct: 350 RSHGISPTAYSYSILIDGLC-------KKGQVEKALDLIEEMVQSN------VKPSLVTY 396

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
            S+ + LCK  L + +  +F ++ + G   DV+ Y++LI+G+ L   +  A KL   +  
Sbjct: 397 SSLFDGLCKSGLTEISLSMFHNLGAEGYKHDVISYNTLINGFVLQRDMGSACKLVHEMRM 456

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF 402
            G +P++ ++N LI+ + K +++++AL ++  M+ +GV                      
Sbjct: 457 NGSVPNSFTFNRLIHGFCKRQRLDKALEVFTIMLKVGV---------------------- 494

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
           +L++   N + D   +      A +L  ++   G  PN  TY ++I  LC E   EKA++
Sbjct: 495 QLNIFTCNIMADEFNREGHFWEALKLINEVQDLGIVPNSYTYNIVIKWLCKEQKTEKAWE 554

Query: 463 LLP------------------DMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLN 504
           +LP                  D   K     KA+ L  KM K  + P  +T ++L  + +
Sbjct: 555 VLPVMLKNNVFPCAIHYNTLIDGYAKQSNPTKALLLYAKMLKVGIPPSIVTYTMLINMFS 614

Query: 505 KDENCHECMNLLPSFLSR 522
                 E   L    + +
Sbjct: 615 NRSKMQEAYYLFKEMIKK 632



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 110/422 (26%), Positives = 185/422 (43%), Gaps = 82/422 (19%)

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           N +++ FC+   + +AF  L  +     SP   +   LI GLC +G+  +A  L  + V 
Sbjct: 327 NAVIHEFCRNGELHEAFELLEDMRSHGISPTAYSYSILIDGLCKKGQVEKALDLIEEMV- 385

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
              + NV P+++ Y+S+ DGLCK G       +F ++   G   D   YN+LI  +    
Sbjct: 386 ---QSNVKPSLVTYSSLFDGLCKSGLTEISLSMFHNLGAEGYKHDVISYNTLINGFVLQ- 441

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
                +   SA   +HE  +NG+        P+  ++  +I+  CK   +DKA E+F  M
Sbjct: 442 -----RDMGSACKLVHEMRMNGSV-------PNSFTFNRLIHGFCKRQRLDKALEVFTIM 489

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN------------ 353
              G+  ++   + + D +   G   +A KL   ++  G +P++ +YN            
Sbjct: 490 LKVGVQLNIFTCNIMADEFNREGHFWEALKLINEVQDLGIVPNSYTYNIVIKWLCKEQKT 549

Query: 354 -----------------------TLINSYSKIEKVEEALSLYGEMISMGVRP-------- 382
                                  TLI+ Y+K     +AL LY +M+ +G+ P        
Sbjct: 550 EKAWEVLPVMLKNNVFPCAIHYNTLIDGYAKQSNPTKALLLYAKMLKVGIPPSIVTYTML 609

Query: 383 -----DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
                + S + EA  LF+ +       D  +F C++ G CK   ++SAW L++++ ++G 
Sbjct: 610 INMFSNRSKMQEAYYLFKEMIKKGLVPDEIIFTCIIAGFCKVGDMKSAWALYEEMSQWGK 669

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVS 497
            PNVVTYT +I G                   KI+   KA  L +KM +  V PD +T +
Sbjct: 670 SPNVVTYTCLIDGYF-----------------KIKRMDKADFLFNKMKRDNVTPDGLTYT 712

Query: 498 IL 499
            L
Sbjct: 713 AL 714



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 151/359 (42%), Gaps = 39/359 (10%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           S+N+L+     ++   +   L   +   G +P+  + N L++ FCK   +  A      +
Sbjct: 430 SYNTLINGFVLQRDMGSACKLVHEMRMNGSVPNSFTFNRLIHGFCKRQRLDKALEVFTIM 489

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
           L+     ++ T   +      +G F EA  L  +         ++PN   Y  +I  LCK
Sbjct: 490 LKVGVQLNIFTCNIMADEFNREGHFWEALKLINEVQDL----GIVPNSYTYNIVIKWLCK 545

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           +    K   +   M    ++P A  YN+LI  Y         + N + AL L+ +     
Sbjct: 546 EQKTEKAWEVLPVMLKNNVFPCAIHYNTLIDGYA-------KQSNPTKALLLYAKM---- 594

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
             L V   P +++Y  +IN       + +A  LF +M  +G++PD ++++ +I G+C +G
Sbjct: 595 --LKVGIPPSIVTYTMLINMFSNRSKMQEAYYLFKEMIKKGLVPDEIIFTCIIAGFCKVG 652

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL 388
            +  A  L+  +   G  P+  +Y  LI+ Y KI+++++A  L+ +M    V PD     
Sbjct: 653 DMKSAWALYEEMSQWGKSPNVVTYTCLIDGYFKIKRMDKADFLFNKMKRDNVTPDG---- 708

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
                          L  T        L  S R+R   E+F ++   G  PN   Y  +
Sbjct: 709 ---------------LTYTALIFGYQSLGYSDRVR---EMFNEMKENGVFPNYTAYATL 749



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 131/289 (45%), Gaps = 17/289 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            L+ AL  F  M+ +     + + N +      + ++   + L   +  +G++P+  + N
Sbjct: 478 RLDKALEVFTIMLKVGVQLNIFTCNIMADEFNREGHFWEALKLINEVQDLGIVPNSYTYN 537

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           I++   CK      A+  L  +L+    P  +    LI G   Q   T+A  L+ K +  
Sbjct: 538 IVIKWLCKEQKTEKAWEVLPVMLKNNVFPCAIHYNTLIDGYAKQSNPTKALLLYAKML-- 595

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             +  + P+++ Y  +I+       + +   LF +M  +G+ PD  ++  +I  +C    
Sbjct: 596 --KVGIPPSIVTYTMLINMFSNRSKMQEAYYLFKEMIKKGLVPDEIIFTCIIAGFCKV-- 651

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G+  +A  L+EE             P+V++Y  +I+   K   +DKA  LF  MK
Sbjct: 652 -----GDMKSAWALYEEMSQWGKS------PNVVTYTCLIDGYFKIKRMDKADFLFNKMK 700

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
              + PD + Y++LI GY  +G  D  R++F  ++  G  P+ ++Y TL
Sbjct: 701 RDNVTPDGLTYTALIFGYQSLGYSDRVREMFNEMKENGVFPNYTAYATL 749



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 81/207 (39%), Gaps = 53/207 (25%)

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           ++V + LI  +     + DA  +FV     G   +  S N L+N +++  + E   SL+ 
Sbjct: 178 IIVANVLIKVFAENNMLVDAADVFVQARRFGLELNILSCNFLLNCFAEANQTEFIRSLFE 237

Query: 374 EMISMGVRPD------------------NSCILEAAE----------------------- 392
           E+   G  P+                  N  I++A E                       
Sbjct: 238 ELKDSGPSPNVFTYTIMMNYYCKGSFGKNIDIVKATEVLEEMEMNGESPTVVTYGAYIHG 297

Query: 393 ------------LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
                       L R L      L+   +N ++   C++  L  A+EL + +  +G  P 
Sbjct: 298 LCRAGCVEFALRLIRDLRIRNQPLNSYCYNAVIHEFCRNGELHEAFELLEDMRSHGISPT 357

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDM 467
             +Y+++I GLC +G +EKA DL+ +M
Sbjct: 358 AYSYSILIDGLCKKGQVEKALDLIEEM 384


>gi|356546522|ref|XP_003541675.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 789

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 114/434 (26%), Positives = 192/434 (44%), Gaps = 52/434 (11%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +   G+ P+    N  +    K   +  A   L R+      PD+VT   LI+G C   +
Sbjct: 257 MQKAGVEPNLSICNTTIYVLVKGCKLEKALRFLERMQVTGIKPDIVTYNSLIKGYCDLNR 316

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM-KGRGIYPDA 231
             +A  L     +  C P+ +     Y +++  LCK+  + +V+ L   M +   + PD 
Sbjct: 317 IEDALELIAGLPSKGCPPDKVS----YYTVMGFLCKEKKIEQVKCLMEKMVQDSNLIPDQ 372

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
             YN+LI +           G+   AL   +E  +         H D + Y +I++S C+
Sbjct: 373 VTYNTLIHML-------SKHGHADDALAFLKEAEDKG------FHIDKVGYSAIVHSFCQ 419

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
              +D+AK L +DM SR   PDVV Y++++DG+C +GRID+A+K+   +   GC P+T S
Sbjct: 420 KGRMDEAKSLVIDMYSRSCNPDVVTYTAIVDGFCRLGRIDEAKKMLQQMYKHGCKPNTVS 479

Query: 352 YNTLINSYSKIEKVEEALSL---------------YGEMISMGVRPDNSCILEAAELFRT 396
           Y  L+N      K  EA  +               YG ++  G R +   + EA +L R 
Sbjct: 480 YTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYG-VVMHGFRREGK-LSEACDLTRE 537

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           +    F       N L+  LC++ ++  A +  ++    G   NVV +T +I G C  G 
Sbjct: 538 MVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGD 597

Query: 457 IEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           +E A  +L DM                ++ ++  PD +T + L + L K     E   L+
Sbjct: 598 MEAALSVLEDM---------------YLSNKH--PDAVTYTALFDALGKKGRLDEAAELI 640

Query: 517 PSFLSRNQEESKLT 530
              LS+  + + +T
Sbjct: 641 VKMLSKGLDPTPVT 654



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 143/319 (44%), Gaps = 44/319 (13%)

Query: 153 FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNV-IPNVICYASIIDGLCKDGF 211
            SP+    GC++      GK   A  + T        PN+ I N   Y  ++ G CK   
Sbjct: 229 LSPEA--FGCVMVSYSRAGKLRNALRVLTLMQKAGVEPNLSICNTTIYV-LVKG-CK--- 281

Query: 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGEL 271
           + K       M+  GI PD   YNSLI+ YC     EDA            E + G    
Sbjct: 282 LEKALRFLERMQVTGIKPDIVTYNSLIKGYCDLNRIEDAL-----------ELIAGLPSK 330

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM-KSRGIIPDVVVYSSLIDGYCLMGRI 330
           G  C PD +SY +++  LCK+  +++ K L   M +   +IPD V Y++LI      G  
Sbjct: 331 G--CPPDKVSYYTVMGFLCKEKKIEQVKCLMEKMVQDSNLIPDQVTYNTLIHMLSKHGHA 388

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEA 390
           DDA       E +G   D   Y+ +++S+ +  +++EA SL  +M S    P        
Sbjct: 389 DDALAFLKEAEDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRSCNP-------- 440

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
                         D+  +  +VDG C+  R+  A ++ +++ ++G +PN V+YT ++ G
Sbjct: 441 --------------DVVTYTAIVDGFCRLGRIDEAKKMLQQMYKHGCKPNTVSYTALLNG 486

Query: 451 LCIEGGIEKAYDLLPDMEE 469
           LC  G   +A +++   EE
Sbjct: 487 LCHSGKSLEAREMINVSEE 505



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 103/496 (20%), Positives = 204/496 (41%), Gaps = 90/496 (18%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMP---SFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           E ++    C    M+  Q +  +P   ++N+L+  L+   +  + +   +     G   D
Sbjct: 349 EKKIEQVKCLMEKMV--QDSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAEDKGFHID 406

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V  + +++ FC+   + +A   +  +  +  +PDVVT   ++ G C  G+  EA  +  
Sbjct: 407 KVGYSAIVHSFCQKGRMDEAKSLVIDMYSRSCNPDVVTYTAIVDGFCRLGRIDEAKKMLQ 466

Query: 182 KFVAFDCRPNVI-------------------------------PNVICYASIIDGLCKDG 210
           +     C+PN +                               PN I Y  ++ G  ++G
Sbjct: 467 QMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGVVMHGFRREG 526

Query: 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGE 270
            +++   L  +M  +G +P     N LI+  C      +AK       +  EE +N    
Sbjct: 527 KLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAK-------KYLEECLNKG-- 577

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
               C  +V+++ ++I+  C+   ++ A  +  DM      PD V Y++L D     GR+
Sbjct: 578 ----CAINVVNFTTVIHGFCQIGDMEAALSVLEDMYLSNKHPDAVTYTALFDALGKKGRL 633

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEA 390
           D+A +L V + S+G  P   ++ ++I+ Y +  +V++ L+L   M+    +P        
Sbjct: 634 DEAAELIVKMLSKGLDPTPVTFRSVIHRYCQWGRVDDMLNLLDRMVKR--KP-------- 683

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
              FR           T++N +++ LC    L  A +L  K+ R   + +  T  V++  
Sbjct: 684 ---FR-----------TIYNHVIEKLCDFGNLEEAEKLLGKVLRTASKLDANTCHVLMES 729

Query: 451 LCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCH 510
            C++ G+                 L A ++  +M +R + PD      + + L  D N  
Sbjct: 730 -CLKKGV----------------ALSAYKVACQMFRRNLTPDLKLCEKVTKKLVLDGNLV 772

Query: 511 ECMNLLPSFLSRNQEE 526
           E   L+  F+ R  ++
Sbjct: 773 EADKLMLRFVERGIQQ 788



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 99/241 (41%), Gaps = 40/241 (16%)

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
           HP  L Y ++++ L K  L   A+ +   M  RGI      +  ++  Y   G++ +A +
Sbjct: 195 HP--LVYYTLLDVLSKTKLCQGARRVLRLMTRRGIELSPEAFGCVMVSYSRAGKLRNALR 252

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395
           +   ++  G  P+ S  NT I    K  K+E+AL     M   G++P             
Sbjct: 253 VLTLMQKAGVEPNLSICNTTIYVLVKGCKLEKALRFLERMQVTGIKP------------- 299

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
                    D+  +N L+ G C   R+  A EL   LP  G  P+ V+Y  ++  LC E 
Sbjct: 300 ---------DIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEK 350

Query: 456 GIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
            IE+   L+  M                +    + PD++T + L  +L+K  +  + +  
Sbjct: 351 KIEQVKCLMEKM----------------VQDSNLIPDQVTYNTLIHMLSKHGHADDALAF 394

Query: 516 L 516
           L
Sbjct: 395 L 395


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/400 (25%), Positives = 186/400 (46%), Gaps = 62/400 (15%)

Query: 75  FNYMIHMQPTPFMP---SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131
           +N +  M    F+P   +++ ++G L           L + +   G+ PD  +   L++ 
Sbjct: 107 YNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDR 166

Query: 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
           FCK+  +  A      + +   +P+VVT   LI       K + A+ +F   ++  C   
Sbjct: 167 FCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGC--- 223

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI-YPDAFVYNSLIRVYCCAVNWEDA 250
            +PN++ Y ++IDG CK G   K   ++  MK   +  PD  +Y  ++            
Sbjct: 224 -VPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDS---------- 272

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
                   EL E              P+V++Y ++++ LCK   V +A++L   M   G 
Sbjct: 273 --------ELKE--------------PNVVTYGALVDGLCKAHKVKEARDLLETMSLEGC 310

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
            P+ ++Y +LIDG+C +G++D+A+++F  +   GC P+  +Y++LI+   K ++++ AL 
Sbjct: 311 EPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALK 370

Query: 371 LYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
           +  +M+      +NSC                  ++ ++  +VDGLCK  +   A+ L  
Sbjct: 371 VLTKML------ENSC----------------APNVVIYTEMVDGLCKVGKTDEAYRLML 408

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            +   G  PNVVTYT MI G    G +++  +LL  M  K
Sbjct: 409 MMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSK 448



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 111/409 (27%), Positives = 189/409 (46%), Gaps = 62/409 (15%)

Query: 85  PFMPSFNSLLGALAGKKYY--VNFICLSER----LNTIGLLPDFVSLNILMNCFCKMIGV 138
           P    +N L+G +   +    +  I L+ER    +  +G++ + V++     C C +   
Sbjct: 44  PGYVVYNILIGGICSTEDLPSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKF 103

Query: 139 SDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVIC 198
             A+  +  ++ K F PD  T   +I  LC   K  +A  LF +      R  + P+V  
Sbjct: 104 EKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMK----RNGITPDVYT 159

Query: 199 YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL 258
           Y +++D  CK G + + R  F +M+  G  P+   Y +LI  Y             S A 
Sbjct: 160 YTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYL-------KTRKLSRAN 212

Query: 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI-IPDV--- 314
           E+ E  ++ NG     C P++++Y ++I+  CK    +KA +++  MK+  + IPDV   
Sbjct: 213 EIFEMMLS-NG-----CVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIY 266

Query: 315 -------------VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
                        V Y +L+DG C   ++ +AR L  ++  EGC P+   Y+ LI+ + K
Sbjct: 267 FRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCK 326

Query: 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
           + K++EA  ++ +M+  G  P+                      +  ++ L+D L K  R
Sbjct: 327 VGKLDEAQEVFTKMLGHGCSPN----------------------VYTYSSLIDKLFKDKR 364

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           L  A ++  K+      PNVV YT M+ GLC  G  ++AY L+  MEEK
Sbjct: 365 LDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEK 413



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 166/355 (46%), Gaps = 20/355 (5%)

Query: 115 TIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF- 173
           T G  P  +  N L++ +C+      A+  L +++   + P  V    LI G+C      
Sbjct: 4   TEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTEDLP 63

Query: 174 -TEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
             E  GL  +         V+ N +   +    LC  G   K   +  +M  +G  PD+ 
Sbjct: 64  SMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSS 123

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            Y+ +I   C A   E        A +L +E +  NG       PDV +Y ++++  CK 
Sbjct: 124 TYSKVIGYLCNASKVE-------KAFQLFQE-MKRNG-----ITPDVYTYTTLLDRFCKV 170

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
            L+++A+  F +M+  G  P+VV Y++LI  Y    ++  A ++F  + S GC+P+  +Y
Sbjct: 171 GLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTY 230

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCL 412
             LI+ + K  + E+A  +Y  M     + D   I +    FR + +   E ++  +  L
Sbjct: 231 TALIDGHCKAGETEKACQIYARM-----KNDKVDIPDVDIYFRIVDSELKEPNVVTYGAL 285

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           VDGLCK+ +++ A +L + +   G EPN + Y  +I G C  G +++A ++   M
Sbjct: 286 VDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKM 340



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 143/373 (38%), Gaps = 100/373 (26%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ V+   L++  CK   V +A   L  +  +   P+ +    LI G C  GK  EA  +
Sbjct: 277 PNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEV 336

Query: 180 FTKFVAFDCRPNVI-------------------------------PNVICYASIIDGLCK 208
           FTK +   C PNV                                PNV+ Y  ++DGLCK
Sbjct: 337 FTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCK 396

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
            G  ++   L L M+ +G YP+   Y ++I  +  A       G     LEL +  +   
Sbjct: 397 VGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKA-------GRVDRCLELLQ-LMTSK 448

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR-------------------- 308
           G     C P+ ++Y  +IN  C   L+D A +L  +MK                      
Sbjct: 449 G-----CAPNFITYRVLINHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGFSHEF 503

Query: 309 -------------GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
                        G +P + VY  LID +   GR++ A +L   + S       ++Y +L
Sbjct: 504 VASLGLLAELSEDGSVPILPVYKLLIDNFIKAGRLEMALELHEELSSFSA-AYQNTYVSL 562

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDG 415
           I S +   KV++A  LY +M   G  P                      +L++  CL+ G
Sbjct: 563 IESLTLACKVDKAFKLYSDMTRRGFVP----------------------ELSMLVCLIKG 600

Query: 416 LCKSWRLRSAWEL 428
           L +  +   A +L
Sbjct: 601 LLRVGKWEEALQL 613



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 19/184 (10%)

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M + G  P  ++++SL+  YC  G    A KL   +   G  P    YN LI      E 
Sbjct: 2   MITEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTED 61

Query: 365 VE--EALSL----YGEMISMGVRPD--NSCIL-----------EAAELFRTLHNTKFELD 405
           +   E + L    Y EM+ MGV  +  N C             +A  + R + +  F  D
Sbjct: 62  LPSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPD 121

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465
            + ++ ++  LC + ++  A++LF+++ R G  P+V TYT ++   C  G IE+A +   
Sbjct: 122 SSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFD 181

Query: 466 DMEE 469
           +M++
Sbjct: 182 EMQQ 185



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 125/301 (41%), Gaps = 39/301 (12%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGAL-AGKKYYVNFICLSERLNTIGLLPDFVSL 125
           +L++A   F  M+    +P + +++SL+  L   K+  +    L++ L      P+ V  
Sbjct: 329 KLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLEN-SCAPNVVIY 387

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
             +++  CK+    +A+  +  +  K   P+VVT   +I G    G+      L     +
Sbjct: 388 TEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTS 447

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR------GIYP---DAFVYNS 236
             C PN I     Y  +I+  C  G ++    L  +MK        G+Y    + F +  
Sbjct: 448 KGCAPNFIT----YRVLINHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGFSHEF 503

Query: 237 LIRVYCCAVNWEDAK-----------------GNTSAALELHEEFVNGNGELGVICHPDV 279
           +  +   A   ED                   G    ALELHEE  + +           
Sbjct: 504 VASLGLLAELSEDGSVPILPVYKLLIDNFIKAGRLEMALELHEELSSFSAAYQN------ 557

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
            +Y S+I SL     VDKA +L+ DM  RG +P++ +   LI G   +G+ ++A +L  S
Sbjct: 558 -TYVSLIESLTLACKVDKAFKLYSDMTRRGFVPELSMLVCLIKGLLRVGKWEEALQLSDS 616

Query: 340 I 340
           I
Sbjct: 617 I 617


>gi|222628664|gb|EEE60796.1| hypothetical protein OsJ_14385 [Oryza sativa Japonica Group]
          Length = 808

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 186/420 (44%), Gaps = 39/420 (9%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLN------TIGLLPDF 122
           N+A C F+ M+   P P + S++++L   A         CL++  N      T G+ P+ 
Sbjct: 291 NEAKCIFDSMVLKGPKPDIISYSTMLHGYA----TATDSCLADVHNIFNLMLTKGIAPNK 346

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
              NIL+N + +   +  A +    +  K   PD VT   +I  LC  G+  +A   F  
Sbjct: 347 HVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNH 406

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
            V       V P+   Y  +I G C  G + K + L  +M  + I P    Y S I    
Sbjct: 407 MVDI----GVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNL 462

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
           C       +G  +   ++ +  V   G+      P+V+++ S++   C    +++A  L 
Sbjct: 463 CK------EGRVAEGKDIMDMMVQ-TGQ-----RPNVVTFNSLMEGYCLVGNMEEAFALL 510

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
             M S GI P+  +Y +L+DGYC  GRIDDA  +F  +  +G  P +  Y+ +++   + 
Sbjct: 511 DAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQA 570

Query: 363 EKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVF 409
            +   A  ++ EMI  G                 N+C  EA  L   L     + D+  F
Sbjct: 571 RRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITF 630

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           N ++  + K  R + A ELF  +  YG  PN+ TY++MI  L  E   E+A +L   +E+
Sbjct: 631 NIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEK 690



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/423 (25%), Positives = 189/423 (44%), Gaps = 31/423 (7%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K GEV+   A C F  M+     P +   NS++  L   K       + +++   G+ PD
Sbjct: 146 KDGEVD--KAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPD 203

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             + +++++  CK   +  A   L +++     P+ +T   LI G  + G + E+  +F 
Sbjct: 204 LFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFK 263

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           +  +  C   VIP V    S I  L K G  N+ + +F  M  +G  PD   Y++++  Y
Sbjct: 264 QMSS--C--GVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGY 319

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
             A +        S   ++H  F   N  L     P+   +  +IN+  +  ++DKA  +
Sbjct: 320 ATATD--------SCLADVHNIF---NLMLTKGIAPNKHVFNILINAYARCGMMDKAMLI 368

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F DM+++G+IPD V ++++I   C +GR+DDA   F  +   G  P  + Y  LI     
Sbjct: 369 FEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCN 428

Query: 362 IEKVEEALSLYGEMISMGVRP----------DNSC----ILEAAELFRTLHNTKFELDLT 407
             ++ +A  L  EM++  + P          +N C    + E  ++   +  T    ++ 
Sbjct: 429 HGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVV 488

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            FN L++G C    +  A+ L   +   G EPN   Y  ++ G C  G I+ A  +  DM
Sbjct: 489 TFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDM 548

Query: 468 EEK 470
             K
Sbjct: 549 LHK 551



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 186/394 (47%), Gaps = 43/394 (10%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           RL   GL PD  S +++   F K   V  A      ++ +   P ++    +I+ LC   
Sbjct: 125 RLLKNGLGPDDFSYSLIYG-FVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMK 183

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
           +  +A  +  K V       + P++  Y+ IIDGLCK   ++K   +   M   G  P++
Sbjct: 184 EMDKAESIVQKMV----DSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNS 239

Query: 232 FVYNSLIRVYCCAVNWEDA----KGNTSAALE---------LHEEFVNG-NGELGVIC-- 275
             YNSLI  Y  +  W ++    K  +S  +          +H  F +G   E   I   
Sbjct: 240 ITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDS 299

Query: 276 ------HPDVLSYCSIIN--SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
                  PD++SY ++++  +   D  +     +F  M ++GI P+  V++ LI+ Y   
Sbjct: 300 MVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARC 359

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS-- 385
           G +D A  +F  ++++G IPDT ++ T+I+S  +I ++++AL  +  M+ +GV P  +  
Sbjct: 360 GMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVY 419

Query: 386 -CILE----------AAELFRTLHNTKF-ELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
            C+++          A EL   + N       +  F+ +++ LCK  R+    ++   + 
Sbjct: 420 GCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMV 479

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           + G  PNVVT+  ++ G C+ G +E+A+ LL  M
Sbjct: 480 QTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAM 513



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 101/405 (24%), Positives = 171/405 (42%), Gaps = 86/405 (21%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P   + NIL++C+                 R+V  PD+        GL + G+  + +GL
Sbjct: 98  PTIHTYNILIDCY-----------------RRVHRPDL--------GLAIVGRLLK-NGL 131

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
                         P+   Y S+I G  KDG V+K   LFL+M  +G+ P   + NS+I+
Sbjct: 132 G-------------PDDFSY-SLIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIK 177

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C     + A           E  V    + G+   PD+ +Y  II+ LCK   +DKA+
Sbjct: 178 ELCKMKEMDKA-----------ESIVQKMVDSGIA--PDLFTYSLIIDGLCKSKAMDKAE 224

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            +   M   G  P+ + Y+SLI GY + G  +++ ++F  + S G IP   + N+ I++ 
Sbjct: 225 RVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHAL 284

Query: 360 SKIEKVEEALSLYGEMISMGVRPD---------------NSCILEAAELFRTLHNTKFEL 404
            K  +  EA  ++  M+  G +PD               +SC+ +   +F  +       
Sbjct: 285 FKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAP 344

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           +  VFN L++   +   +  A  +F+ +   G  P+ VT+  +I  LC  G ++ A    
Sbjct: 345 NKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKF 404

Query: 465 PDM-------EEKIRECL-----------KAIELLHKMAKRYVKP 491
             M        E +  CL           KA EL+ +M  + + P
Sbjct: 405 NHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPP 449



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 144/312 (46%), Gaps = 28/312 (8%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLL------GALAGKKYYVNFICLSERLNTIGLLP 120
            L+DAL  FN+M+ +   P    +  L+      G L   K  +     SE +N     P
Sbjct: 396 RLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELI-----SEMMNKDIPPP 450

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
                + ++N  CK   V++    +  +++    P+VVT   L+ G C+ G   EA  L 
Sbjct: 451 GVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALL 510

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
               +      + PN   Y +++DG CK+G ++    +F DM  +G+ P + +Y+ ++  
Sbjct: 511 DAMASI----GIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILH- 565

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
                    A+  T+A    HE   +G     V  H    +Y  ++  LC++   D+A  
Sbjct: 566 -----GLFQARRTTAAKKMFHEMIESGTT---VSIH----TYGVVLGGLCRNNCTDEANM 613

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           L   + +  +  D++ ++ +I     +GR  +A++LF +I + G +P+  +Y+ +I +  
Sbjct: 614 LLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLI 673

Query: 361 KIEKVEEALSLY 372
           K E  EEA +L+
Sbjct: 674 KEESYEEADNLF 685


>gi|356503775|ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Glycine max]
          Length = 777

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/400 (27%), Positives = 181/400 (45%), Gaps = 31/400 (7%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           TP   S+N L+ A   +      I  +E++   GL P+ ++ N +++ FC+   V  A  
Sbjct: 357 TPSKISYNILVNAYCQEGDVKKAILTTEQMEERGLEPNRITFNTVISKFCETGEVDHAET 416

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
            + R++ K  SP V T   LI G   +G F        +F+    +  + PNVI Y S+I
Sbjct: 417 WVRRMVEKGVSPTVETYNSLINGYGQKGHFVRC----FEFLDEMDKAGIKPNVISYGSLI 472

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
           + LCKD  +    ++  DM GRG+ P+A +YN LI   C     +DA           +E
Sbjct: 473 NCLCKDRKLIDAEIVLADMIGRGVSPNAEIYNMLIEASCSLSKLKDA-------FRFFDE 525

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
            +             +++Y ++IN L ++  V KA++LFL M  +G  PDV+ Y+SLI G
Sbjct: 526 MIQSG------IDATLVTYNTLINGLGRNGRVKKAEDLFLQMAGKGCNPDVITYNSLISG 579

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           Y          +L+  ++  G  P   +++ LI +  K E V     ++ EM+ M + PD
Sbjct: 580 YAKSVNTQKCLELYDKMKILGIKPTVGTFHPLIYACRK-EGVVTMDKMFQEMLQMDLVPD 638

Query: 384 -------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
                        +  +++A  L + + +   + D   +N L+    +  R+     L  
Sbjct: 639 QFVYNEMIYSYAEDGNVMKAMSLHQQMVDQGVDCDKVTYNSLILAYLRDRRVSEIKHLVD 698

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            +   G  P V TY ++I GLC       AY    +M E+
Sbjct: 699 DMKAKGLVPKVDTYNILIKGLCDLKDFNGAYFWYREMVER 738



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 111/436 (25%), Positives = 193/436 (44%), Gaps = 49/436 (11%)

Query: 25  KKPISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPT 84
           KK I    + E   L  N ++           +S+  ++GEV+   A  +   M+    +
Sbjct: 377 KKAILTTEQMEERGLEPNRIT-------FNTVISKFCETGEVD--HAETWVRRMVEKGVS 427

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + ++NSL+     K ++V      + ++  G+ P+ +S   L+NC CK   + DA + 
Sbjct: 428 PTVETYNSLINGYGQKGHFVRCFEFLDEMDKAGIKPNVISYGSLINCLCKDRKLIDAEIV 487

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           L  ++ +  SP+      LI   C   K  +A   F + +    +  +   ++ Y ++I+
Sbjct: 488 LADMIGRGVSPNAEIYNMLIEASCSLSKLKDAFRFFDEMI----QSGIDATLVTYNTLIN 543

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           GL ++G V K   LFL M G+G  PD   YNSLI  Y  +V       NT   LEL+++ 
Sbjct: 544 GLGRNGRVKKAEDLFLQMAGKGCNPDVITYNSLISGYAKSV-------NTQKCLELYDKM 596

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
                 LG+   P V ++  +I +  K+ +V   K +F +M    ++PD  VY+ +I  Y
Sbjct: 597 ----KILGI--KPTVGTFHPLIYACRKEGVVTMDK-MFQEMLQMDLVPDQFVYNEMIYSY 649

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
              G +  A  L   +  +G   D  +YN+LI +Y +  +V E   L  +M + G+ P  
Sbjct: 650 AEDGNVMKAMSLHQQMVDQGVDCDKVTYNSLILAYLRDRRVSEIKHLVDDMKAKGLVP-- 707

Query: 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
                                +  +N L+ GLC       A+  ++++   G   NV   
Sbjct: 708 --------------------KVDTYNILIKGLCDLKDFNGAYFWYREMVERGLLLNVSMC 747

Query: 445 TVMICGLCIEGGIEKA 460
             +I GL  EG + +A
Sbjct: 748 YQLISGLREEGMLREA 763



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 129/522 (24%), Positives = 212/522 (40%), Gaps = 93/522 (17%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           + DA   F+ MI     P   ++N+L+            +   ER+    +  + V+ N 
Sbjct: 208 IKDARKLFDEMIQRNMVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVECNLVTYNS 267

Query: 128 LMNCFCKMIGVSDAFVAL----------GRILRKVFSP------------------DVVT 159
           L+N  C    V DA   L          G  L  VF                    D  T
Sbjct: 268 LLNGLCGSGRVDDAREVLLEMEGSGFLPGGFLSFVFDDHSNGAGDDGLFDGKEIRIDERT 327

Query: 160 LGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLF 219
              L+ GLC  G+  +A  +  K V       V P+ I Y  +++  C++G V K  +  
Sbjct: 328 YCILLNGLCRVGRIEKAEEVLAKLV----ENGVTPSKISYNILVNAYCQEGDVKKAILTT 383

Query: 220 LDMKGRGIYPDAFVYNSLIRVYC------CAVNW--EDAKGNTSAALELHEEFVNGNGEL 271
             M+ RG+ P+   +N++I  +C       A  W     +   S  +E +   +NG G+ 
Sbjct: 384 EQMEERGLEPNRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQK 443

Query: 272 G--VIC------------HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
           G  V C             P+V+SY S+IN LCKD  +  A+ +  DM  RG+ P+  +Y
Sbjct: 444 GHFVRCFEFLDEMDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIY 503

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           + LI+  C + ++ DA + F  +   G      +YNTLIN   +  +V++A  L+ +M  
Sbjct: 504 NMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDLFLQMAG 563

Query: 378 MGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
            G  P                      D+  +N L+ G  KS   +   EL+ K+   G 
Sbjct: 564 KGCNP----------------------DVITYNSLISGYAKSVNTQKCLELYDKMKILGI 601

Query: 438 EPNVVTYTVMICGLCIEG--GIEKAY------DLLPDM---EEKIRE------CLKAIEL 480
           +P V T+  +I     EG   ++K +      DL+PD     E I         +KA+ L
Sbjct: 602 KPTVGTFHPLIYACRKEGVVTMDKMFQEMLQMDLVPDQFVYNEMIYSYAEDGNVMKAMSL 661

Query: 481 LHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
             +M  + V  D++T + L     +D    E  +L+    ++
Sbjct: 662 HQQMVDQGVDCDKVTYNSLILAYLRDRRVSEIKHLVDDMKAK 703



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/426 (24%), Positives = 190/426 (44%), Gaps = 54/426 (12%)

Query: 81  MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSD 140
           M P+ F  ++N +LG L   +   +   L + +    ++P+ V+ N L++ +CK+ G+ +
Sbjct: 188 MGPSVF--AYNLVLGGLCKVRRIKDARKLFDEMIQRNMVPNTVTYNTLIDGYCKVGGIEE 245

Query: 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS-------------GLFTKFVAFD 187
           A     R+  +    ++VT   L+ GLC  G+  +A              G F  FV FD
Sbjct: 246 ALGFKERMKEQNVECNLVTYNSLLNGLCGSGRVDDAREVLLEMEGSGFLPGGFLSFV-FD 304

Query: 188 CRPN------------VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
              N            +  +   Y  +++GLC+ G + K   +   +   G+ P    YN
Sbjct: 305 DHSNGAGDDGLFDGKEIRIDERTYCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYN 364

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
            L+  YC        +G+   A+   E+      E G+   P+ +++ ++I+  C+   V
Sbjct: 365 ILVNAYC-------QEGDVKKAILTTEQME----ERGL--EPNRITFNTVISKFCETGEV 411

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           D A+     M  +G+ P V  Y+SLI+GY   G      +    ++  G  P+  SY +L
Sbjct: 412 DHAETWVRRMVEKGVSPTVETYNSLINGYGQKGHFVRCFEFLDEMDKAGIKPNVISYGSL 471

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRP---------DNSCIL----EAAELFRTLHNTKF 402
           IN   K  K+ +A  +  +MI  GV P         + SC L    +A   F  +  +  
Sbjct: 472 INCLCKDRKLIDAEIVLADMIGRGVSPNAEIYNMLIEASCSLSKLKDAFRFFDEMIQSGI 531

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
           +  L  +N L++GL ++ R++ A +LF ++   G  P+V+TY  +I G       +K  +
Sbjct: 532 DATLVTYNTLINGLGRNGRVKKAEDLFLQMAGKGCNPDVITYNSLISGYAKSVNTQKCLE 591

Query: 463 LLPDME 468
           L   M+
Sbjct: 592 LYDKMK 597



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 107/514 (20%), Positives = 204/514 (39%), Gaps = 90/514 (17%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L++A   ++ M      P   S N LL  L   +++   + +   +   G  PD V+   
Sbjct: 103 LDEATDLYSTMRKDGFVPSTRSVNRLLRTLVDSRHFEKTLAVFADVIDSGTRPDAVAYGK 162

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
            +     +  +   F  +  +++    P V     ++ GLC   +  +A  LF + +   
Sbjct: 163 AVQAAVMLKDLDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDARKLFDEMI--- 219

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            + N++PN + Y ++IDG CK G + +       MK + +  +   YNSL+   C +   
Sbjct: 220 -QRNMVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVECNLVTYNSLLNGLCGSGRV 278

Query: 248 EDAKGNTSAALELH--------------EEFVNGNGELGVI----CHPDVLSYCSIINSL 289
           +DA+      LE+               ++  NG G+ G+        D  +YC ++N L
Sbjct: 279 DDAR---EVLLEMEGSGFLPGGFLSFVFDDHSNGAGDDGLFDGKEIRIDERTYCILLNGL 335

Query: 290 CKDVLVDKAKELFL-----------------------------------DMKSRGIIPDV 314
           C+   ++KA+E+                                      M+ RG+ P+ 
Sbjct: 336 CRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAILTTEQMEERGLEPNR 395

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           + ++++I  +C  G +D A      +  +G  P   +YN+LIN Y +            E
Sbjct: 396 ITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQKGHFVRCFEFLDE 455

Query: 375 MISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
           M   G++P+             +  +++A  +   +       +  ++N L++  C   +
Sbjct: 456 MDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIYNMLIEASCSLSK 515

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELL 481
           L+ A+  F ++ + G +  +VTY  +I GL   G ++KA DL                  
Sbjct: 516 LKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDLFL---------------- 559

Query: 482 HKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
            +MA +   PD IT + L     K  N  +C+ L
Sbjct: 560 -QMAGKGCNPDVITYNSLISGYAKSVNTQKCLEL 592



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 98/434 (22%), Positives = 163/434 (37%), Gaps = 84/434 (19%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G +P   S+N L+                  ++     PD V  G  ++   M     + 
Sbjct: 117 GFVPSTRSVNRLLRTLVDSRHFEKTLAVFADVIDSGTRPDAVAYGKAVQAAVMLKDLDKG 176

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L    V    +  + P+V  Y  ++ GLCK   +   R LF +M  R + P+   YN+
Sbjct: 177 FELMKSMV----KDGMGPSVFAYNLVLGGLCKVRRIKDARKLFDEMIQRNMVPNTVTYNT 232

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI  YC     E+A G           F     E  V C  ++++Y S++N LC    VD
Sbjct: 233 LIDGYCKVGGIEEALG-----------FKERMKEQNVEC--NLVTYNSLLNGLCGSGRVD 279

Query: 297 KAKELFLDMKSRGIIP----------------------------DVVVYSSLIDGYCLMG 328
            A+E+ L+M+  G +P                            D   Y  L++G C +G
Sbjct: 280 DAREVLLEMEGSGFLPGGFLSFVFDDHSNGAGDDGLFDGKEIRIDERTYCILLNGLCRVG 339

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL 388
           RI+ A ++   +   G  P   SYN L+N+Y +   V++A+    +M   G+ P+     
Sbjct: 340 RIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAILTTEQMEERGLEPNR---- 395

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
                               FN ++   C++  +  A    +++   G  P V TY  +I
Sbjct: 396 ------------------ITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLI 437

Query: 449 CGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDEN 508
            G   +G                   ++  E L +M K  +KP+ I+   L   L KD  
Sbjct: 438 NGYGQKG-----------------HFVRCFEFLDEMDKAGIKPNVISYGSLINCLCKDRK 480

Query: 509 CHECMNLLPSFLSR 522
             +   +L   + R
Sbjct: 481 LIDAEIVLADMIGR 494


>gi|413944227|gb|AFW76876.1| hypothetical protein ZEAMMB73_037126 [Zea mays]
          Length = 595

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 133/514 (25%), Positives = 212/514 (41%), Gaps = 61/514 (11%)

Query: 27  PISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPF 86
           P SL S +  ++ H     +    +KL++  S  +++    L D+L          P P 
Sbjct: 78  PASLASLHSLAARHRIPPPSALLLSKLVRRFSSPAEAAGF-LRDSLA------SGAPAPD 130

Query: 87  MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALG 146
           +  FNSLL AL           L   +    + PD V+  IL+N  CK   V DA   L 
Sbjct: 131 ISIFNSLLTALGRAGNLRGMTELFTSMRDASVKPDVVTYGILLNGLCKSGHVGDALKVLD 190

Query: 147 RILR--KVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI----PNVICYA 200
           R+        PD+  L  ++ GLC  G+  +A       +  D R   +    PN + Y 
Sbjct: 191 RMSSPGSDVCPDIAILNTVVDGLCKIGRLQQA------IIFVDERMRHVHGCAPNAVTYN 244

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL 260
            + D  C+ G +     +   M+  G+ P+    N++I   C         G   AALE 
Sbjct: 245 CLADAFCRVGDIGMACKIVARMEKEGVAPNVITMNTIIGGLCRV-------GRVGAALEF 297

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
             E      E       + ++Y ++ ++      VD A ELF +M   G  PD V+Y ++
Sbjct: 298 FREKRTVWPE----ARGNAVTYSTLASAFLHCNNVDMAMELFHEMADHGHRPDAVMYFTM 353

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           I G    GR+ DA     S++  G   D  +YN LI  + + +K+ EA  L  EM  +G+
Sbjct: 354 ISGLTQAGRLLDACTTAASMKKAGFKLDAKAYNILIGGFCRKKKLHEAYELLEEMKGVGL 413

Query: 381 RPDN-------SCILEAA------ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           +PD        S + +A       EL   + +   +  +  F  LV G CK+ +   A  
Sbjct: 414 QPDVYTYNTLLSGLCKAGDFSAVDELLGHMIDDGCQPSVVTFGTLVHGYCKAGKTDEALR 473

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK----------------- 470
           +F+ +     +PN V Y  +I  LC    ++ A  L  +M EK                 
Sbjct: 474 IFRSMDEARIQPNTVIYNTLIDFLCKSREVDVAIKLFDEMREKNVPANVTTYNALLKGLQ 533

Query: 471 -IRECLKAIELLHKMAKRYVKPDEITVSILEELL 503
             +   KA EL+ +M +    P+ +TV +L E L
Sbjct: 534 DKKMAEKAFELMDRMREERCTPNYVTVDVLMEWL 567


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/379 (28%), Positives = 169/379 (44%), Gaps = 60/379 (15%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL P+ V+ +IL++ FCK   +  A   LG++        V     LI G C  GK   A
Sbjct: 385 GLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAA 444

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             LF + +A   +PNV+     Y S+I G CK+G ++    L+ +M G+GI P+ + + +
Sbjct: 445 KSLFDEMIANGLKPNVV----IYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTA 500

Query: 237 LIRVYCCAVNWEDA----------------------------KGNTSAALELHEEFVNGN 268
           LI   C A    +A                            +GNT  A EL +E V   
Sbjct: 501 LISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMV--- 557

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
            E G++  PD  +Y  +I+ LC    V +A+E   D++      + + +S+L+ GYC  G
Sbjct: 558 -EKGLV--PDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEG 614

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL 388
           R+DDA      +   G   D   Y+ LI    + +     + L  +M   G+RPDN    
Sbjct: 615 RLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDN---- 670

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
                              ++  ++D   K+  L+ A+ L+  +   G  PNVVTYT +I
Sbjct: 671 ------------------VLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALI 712

Query: 449 CGLCIEGGIEKAYDLLPDM 467
            GLC  G ++KA  L  +M
Sbjct: 713 NGLCKIGLMDKAELLCREM 731



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 112/414 (27%), Positives = 185/414 (44%), Gaps = 30/414 (7%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           D L     M+     P + + + +L  L   + +   + L + + + GL PD      ++
Sbjct: 163 DGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVV 222

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
              C++     A   +GR+        V T    IRGLC   +  EA  +         R
Sbjct: 223 RSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLR 282

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
            +V      Y +++ GLCK         +  +M   G  P     ++L       V+   
Sbjct: 283 ADVGT----YCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNL-------VDGLR 331

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
            KGN  +A +L    VN   + GV   P +  Y ++INS+CKD  +D+A+ LF +M  +G
Sbjct: 332 KKGNIGSAFDL----VNKVKKFGVA--PSLFVYNALINSMCKDGKLDEAESLFNNMGHKG 385

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
           + P+ V YS LID +C  G++D A      +   G       Y++LI+ + K+ K+  A 
Sbjct: 386 LFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAK 445

Query: 370 SLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           SL+ EMI+ G++P+                +  A  L+  +       +   F  L+ GL
Sbjct: 446 SLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGL 505

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           C + R+  A +LF ++  +   PN VTY V+I G C EG   +A++LL +M EK
Sbjct: 506 CHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEK 559



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 111/436 (25%), Positives = 194/436 (44%), Gaps = 46/436 (10%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E EL++A   ++ M     +P   +F +L+  L           L   +    ++P+ V+
Sbjct: 473 EGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVT 532

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N+L+   CK      AF  L  ++ K   PD  T   LI GLC  G+ +EA        
Sbjct: 533 YNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQ 592

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
               + N +    C+++++ G CK+G ++       +M GRG+  D   Y+ LI      
Sbjct: 593 GEQQKLNEM----CFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIY---GI 645

Query: 245 VNWEDAKGNTSAALELHEE-----------FVNGNGELGVI--------------CHPDV 279
           +  +D +       ++H++            ++ N + G +              C P+V
Sbjct: 646 LRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNV 705

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           ++Y ++IN LCK  L+DKA+ L  +M +   +P+   Y+  +D     G I+ A +L   
Sbjct: 706 VTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLH-D 764

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCIL-------- 388
           +  EG + +T +YN LI  + K+ +++EA  +   MI  G+ PD    S I+        
Sbjct: 765 VLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGD 824

Query: 389 --EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTV 446
             EA +L+ ++ N     D   +N L+ G C +  L  A+EL   + R G +PN  TY  
Sbjct: 825 LKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNS 884

Query: 447 MICGLCIEGGIEKAYD 462
           +I G C+   +    D
Sbjct: 885 LIHGTCLMSSVSSTAD 900



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 119/442 (26%), Positives = 191/442 (43%), Gaps = 70/442 (15%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL P+ V    L++ +CK   + +AF     +  K  SP+  T   LI GLC   +  EA
Sbjct: 455 GLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEA 514

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
           + LF + V +    NVIPN + Y  +I+G CK+G   +   L  +M  +G+ PD + Y  
Sbjct: 515 NKLFGEMVEW----NVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRP 570

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVL-SYCS----------- 284
           LI   C       + G  S A E   +      +L  +C   +L  YC            
Sbjct: 571 LISGLC-------STGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDAC 623

Query: 285 --------IINSLCKDVLV-------DKAK--ELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
                    ++ +C  VL+       D+    +L   M  +G+ PD V+Y+++ID     
Sbjct: 624 REMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKA 683

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN--- 384
           G +  A  L+  + SEGC+P+  +Y  LIN   KI  +++A  L  EM++    P+    
Sbjct: 684 GNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTY 743

Query: 385 SCILE------AAELFRTLHNTKFE---LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
           +C L+        E    LH+   E    +   +N L+ G CK  R++ A E+   +   
Sbjct: 744 ACFLDYLTSEGNIEKAIQLHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDS 803

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK------------------IRECLKA 477
           G  P+ ++Y+ +I   C  G +++A  L   M  +                    E  KA
Sbjct: 804 GISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKA 863

Query: 478 IELLHKMAKRYVKPDEITVSIL 499
            EL   M +R VKP+  T + L
Sbjct: 864 FELRDDMMRRGVKPNRATYNSL 885



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 162/367 (44%), Gaps = 30/367 (8%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G +P   +++ L++   K   +  AF  + ++ +   +P +     LI  +C  GK  EA
Sbjct: 315 GFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEA 374

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             LF           + PN + Y+ +ID  CK G ++        M   GI    + Y+S
Sbjct: 375 ESLFNNM----GHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSS 430

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI  +C         G   AA  L +E +  NG       P+V+ Y S+I+  CK+  + 
Sbjct: 431 LISGHC-------KLGKLRAAKSLFDEMI-ANG-----LKPNVVIYTSLISGYCKEGELH 477

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A  L+ +M  +GI P+   +++LI G C   R+ +A KLF  +     IP+  +YN LI
Sbjct: 478 NAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLI 537

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFE 403
             + K      A  L  EM+  G+ PD                + EA E    L   + +
Sbjct: 538 EGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQK 597

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
           L+   F+ L+ G CK  RL  A +  +++   G   ++V Y+V+I G+  +       DL
Sbjct: 598 LNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDL 657

Query: 464 LPDMEEK 470
           L  M ++
Sbjct: 658 LKQMHDQ 664



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 107/266 (40%), Gaps = 47/266 (17%)

Query: 281 SYCSIINSLCKDVLVDKAK-----------------ELFLDMKSRGIIPDVVVYSSLIDG 323
           S+C +I++L +  L   A                  E FLD   +      + +  LI  
Sbjct: 95  SFCILIHALVQSNLYWPASSLLQTLLLRGLNPEGLFESFLDSYRKCNFSTTLGFDLLIQT 154

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           Y    R  D   +   +   G +P   + + ++N   +I +   AL L+ E++S G+RPD
Sbjct: 155 YVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPD 214

Query: 384 ---------NSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
                    + C     + A E+   + ++  +L +  +N  + GLCK+ R+  A E+  
Sbjct: 215 VYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKN 274

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVK 490
            L   G   +V TY  ++ GLC                 K+ E     E++++M +    
Sbjct: 275 LLSYKGLRADVGTYCTLVLGLC-----------------KVEEFEAGEEMMNEMIEFGFV 317

Query: 491 PDEITVSILEELLNKDENCHECMNLL 516
           P E  VS L + L K  N     +L+
Sbjct: 318 PSEAAVSNLVDGLRKKGNIGSAFDLV 343


>gi|357121540|ref|XP_003562477.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Brachypodium distachyon]
          Length = 556

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 184/412 (44%), Gaps = 47/412 (11%)

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           +S +++++ FCK   V DA   L  + R     +      L+     Q      +GL  +
Sbjct: 149 LSASVVVDGFCKSGSVDDAHGLLDELPRHGVGLNACCYNSLLDSYTRQRNDDAVAGLLKE 208

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
                    V P V  Y  ++DGL + G ++KV  ++ +MK + +  D + Y+++I  YC
Sbjct: 209 ME----NRGVEPTVGTYTILVDGLSRAGDISKVEAVYDEMKRKNVAGDVYFYSAVINAYC 264

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
                    GN   A E+ +E V G+G       P+  +Y ++IN  CK   ++ A+ L 
Sbjct: 265 RG-------GNVRRASEVFDECV-GHG-----VEPNERTYGALINGFCKIGQIEAAEMLL 311

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
            DM+ RG+  + +V++++IDGYC  G ++ A ++   +E  G   D  +YNTL     ++
Sbjct: 312 ADMQLRGVGHNQIVFNTMIDGYCRHGMVEKALEIKAVMEKMGIELDIYTYNTLACGLCRV 371

Query: 363 EKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVF 409
            ++E+A  L   M   GV P+                ++EA  LFR +        +  +
Sbjct: 372 NRMEDAKKLLHIMAEKGVAPNYVSYTTLISIHAKEGDMVEARRLFRDMEGKGSRPSVVTY 431

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           N ++DG  K+  +R A    K++ + G  P++ TY  ++ G C+ G ++           
Sbjct: 432 NVMIDGYIKNGSIREAERFKKEMEKKGLVPDIYTYAGLVHGHCVNGKVD----------- 480

Query: 470 KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
                  A+ L  +M  R  KP+ +  + L   L K+    E   L    L+
Sbjct: 481 ------VALRLFEEMKHRGTKPNVVAYTALVSGLAKEGRSEEAFQLYDDMLA 526



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 149/341 (43%), Gaps = 42/341 (12%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           +R N  G   D    + ++N +C+   V  A       +     P+  T G LI G C  
Sbjct: 245 KRKNVAG---DVYFYSAVINAYCRGGNVRRASEVFDECVGHGVEPNERTYGALINGFCKI 301

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G+   A  L            V  N I + ++IDG C+ G V K   +   M+  GI  D
Sbjct: 302 GQIEAAEMLLADMQLR----GVGHNQIVFNTMIDGYCRHGMVEKALEIKAVMEKMGIELD 357

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
            + YN+L    C     EDAK           + ++   E GV   P+ +SY ++I+   
Sbjct: 358 IYTYNTLACGLCRVNRMEDAK-----------KLLHIMAEKGVA--PNYVSYTTLISIHA 404

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K+  + +A+ LF DM+ +G  P VV Y+ +IDGY   G I +A +    +E +G +PD  
Sbjct: 405 KEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKNGSIREAERFKKEMEKKGLVPDIY 464

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFN 410
           +Y  L++ +    KV+ AL L+ EM   G +P                      ++  + 
Sbjct: 465 TYAGLVHGHCVNGKVDVALRLFEEMKHRGTKP----------------------NVVAYT 502

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
            LV GL K  R   A++L+  +   G  P+   Y+V++  L
Sbjct: 503 ALVSGLAKEGRSEEAFQLYDDMLAAGLTPDDTLYSVLVGSL 543



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 4/172 (2%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            + DA    + M      P   S+ +L+   A +   V    L   +   G  P  V+ N
Sbjct: 373 RMEDAKKLLHIMAEKGVAPNYVSYTTLISIHAKEGDMVEARRLFRDMEGKGSRPSVVTYN 432

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           ++++ + K   + +A      + +K   PD+ T   L+ G C+ GK   A  LF +    
Sbjct: 433 VMIDGYIKNGSIREAERFKKEMEKKGLVPDIYTYAGLVHGHCVNGKVDVALRLFEEMKHR 492

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
             +    PNV+ Y +++ GL K+G   +   L+ DM   G+ PD  +Y+ L+
Sbjct: 493 GTK----PNVVAYTALVSGLAKEGRSEEAFQLYDDMLAAGLTPDDTLYSVLV 540


>gi|357121428|ref|XP_003562422.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Brachypodium distachyon]
          Length = 663

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 124/439 (28%), Positives = 197/439 (44%), Gaps = 68/439 (15%)

Query: 103 YVNFICLSER----------LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKV 152
           +++ +C S R          ++ +G  PD  + NI +   CK   + DA   + ++  K 
Sbjct: 234 WISALCQSNRIELVQELLVDMDKLGCSPDIWACNIYIYYLCKQNRLPDALQMVEKMRTKG 293

Query: 153 FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFV 212
            SPDVVT   ++ GLC   KF EA GL+ + V  D +P+V     C  ++I GLCK+  V
Sbjct: 294 TSPDVVTYQTVVSGLCDNKKFAEAIGLWEEMVKRDLKPDVFS---C-GALIFGLCKNNKV 349

Query: 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
           ++   L   M    I     +YN+LI  +  A       G+   A ++   F+  NG   
Sbjct: 350 DEAFELASRMLTLDIELSVCIYNALISGFWRA-------GSIDKAYKII-SFMRTNG--- 398

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
             C PD+++Y  ++N  C   +++KA++L   M++ G+ PD   Y+ L+ G C   ++D 
Sbjct: 399 --CEPDIVTYNILLNHYCTIGMMEKAEKLIRKMETSGVNPDRYSYNQLLKGLCKTHQLDK 456

Query: 333 ARKLFVSIESE-GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAA 391
           A   FVS   E G   DT S N LI+++ K +KV+ AL L+ EM   G++ D        
Sbjct: 457 AFA-FVSDHMEVGGFCDTVSCNILIDAFCKTKKVKSALELFKEMGYKGMQADA------- 508

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
                            +  L++GL        A ELF+++     +PNV  Y +M+  L
Sbjct: 509 ---------------VTYGTLINGLFSVGYYNLAEELFEQMLNAQIDPNVNLYNIMLHHL 553

Query: 452 CIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHE 511
           C  G  ++A  +   M +K                  V PD +T + L   L K     E
Sbjct: 554 CKVGHFKRAQTIFSHMIQK-----------------EVSPDTVTFNTLIYWLGKRSRAIE 596

Query: 512 CMNLLPSFLSRNQEESKLT 530
            +NL     +R  E   LT
Sbjct: 597 ALNLFKDMRTRGVEPDTLT 615



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/403 (26%), Positives = 170/403 (42%), Gaps = 39/403 (9%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            L DAL     M     +P + ++ +++  L   K +   I L E +    L PD  S  
Sbjct: 278 RLPDALQMVEKMRTKGTSPDVVTYQTVVSGLCDNKKFAEAIGLWEEMVKRDLKPDVFSCG 337

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+   CK   V +AF    R+L       V     LI G    G   +A     K ++F
Sbjct: 338 ALIFGLCKNNKVDEAFELASRMLTLDIELSVCIYNALISGFWRAGSIDKA----YKIISF 393

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                  P+++ Y  +++  C  G + K   L   M+  G+ PD + YN L++  C    
Sbjct: 394 MRTNGCEPDIVTYNILLNHYCTIGMMEKAEKLIRKMETSGVNPDRYSYNQLLKGLC---- 449

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                   +  L+    FV+ + E+G  C  D +S   +I++ CK   V  A ELF +M 
Sbjct: 450 -------KTHQLDKAFAFVSDHMEVGGFC--DTVSCNILIDAFCKTKKVKSALELFKEMG 500

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            +G+  D V Y +LI+G   +G  + A +LF  + +    P+ + YN +++   K+   +
Sbjct: 501 YKGMQADAVTYGTLINGLFSVGYYNLAEELFEQMLNAQIDPNVNLYNIMLHHLCKVGHFK 560

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
            A +++  MI   V PD                         FN L+  L K  R   A 
Sbjct: 561 RAQTIFSHMIQKEVSPDT----------------------VTFNTLIYWLGKRSRAIEAL 598

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
            LFK +   G EP+ +T+  +I GL  EG    AY++   M E
Sbjct: 599 NLFKDMRTRGVEPDTLTFKYLISGLLDEGKSTLAYEVWEYMME 641



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 119/271 (43%), Gaps = 17/271 (6%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           + T G  PD V+ NIL+N +C +  +  A   + ++     +PD  +   L++GLC   +
Sbjct: 394 MRTNGCEPDIVTYNILLNHYCTIGMMEKAEKLIRKMETSGVNPDRYSYNQLLKGLCKTHQ 453

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
             +A      FV+         + +    +ID  CK   V     LF +M  +G+  DA 
Sbjct: 454 LDKAFA----FVSDHMEVGGFCDTVSCNILIDAFCKTKKVKSALELFKEMGYKGMQADAV 509

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            Y +LI       N   + G  + A EL E+ +N          P+V  Y  +++ LCK 
Sbjct: 510 TYGTLI-------NGLFSVGYYNLAEELFEQMLNAQ------IDPNVNLYNIMLHHLCKV 556

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
               +A+ +F  M  + + PD V +++LI       R  +A  LF  + + G  PDT ++
Sbjct: 557 GHFKRAQTIFSHMIQKEVSPDTVTFNTLIYWLGKRSRAIEALNLFKDMRTRGVEPDTLTF 616

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
             LI+      K   A  ++  M+  G+  D
Sbjct: 617 KYLISGLLDEGKSTLAYEVWEYMMENGIILD 647



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 144/362 (39%), Gaps = 69/362 (19%)

Query: 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV 215
           D + +  ++RGL      +++      +   + RP    +    A ++  L  DG    +
Sbjct: 89  DPIVVNLVVRGL------SDSETAVRFYWWAESRPGFDHSQFAIAYLVSLLFMDGNFALL 142

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV-NGNGELGVI 274
                 +K +G+     +Y  L+  Y  A       G   + +E  +E V +G  E GV 
Sbjct: 143 SEFLGRVKSQGVALHRSLYRILLSGYVRA-------GKFDSVIETFDEMVMSGCREFGV- 194

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
              D   Y  ++   C   LV+K  ++ L   ++G       YS  I   C   RI+  +
Sbjct: 195 ---DYNRYIGVLVKNCCFDLVEKYYDMAL---AKGFCLTPFTYSRWISALCQSNRIELVQ 248

Query: 335 KLFVSIESEGC-----------------------------------IPDTSSYNTLINSY 359
           +L V ++  GC                                    PD  +Y T+++  
Sbjct: 249 ELLVDMDKLGCSPDIWACNIYIYYLCKQNRLPDALQMVEKMRTKGTSPDVVTYQTVVSGL 308

Query: 360 SKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDL 406
              +K  EA+ L+ EM+   ++PD             N+ + EA EL   +     EL +
Sbjct: 309 CDNKKFAEAIGLWEEMVKRDLKPDVFSCGALIFGLCKNNKVDEAFELASRMLTLDIELSV 368

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
            ++N L+ G  ++  +  A+++   +   G EP++VTY +++   C  G +EKA  L+  
Sbjct: 369 CIYNALISGFWRAGSIDKAYKIISFMRTNGCEPDIVTYNILLNHYCTIGMMEKAEKLIRK 428

Query: 467 ME 468
           ME
Sbjct: 429 ME 430



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 104/249 (41%), Gaps = 17/249 (6%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L  ++ T G+ PD  S N L+   CK   +  AF  +   +      D V+   LI   C
Sbjct: 425 LIRKMETSGVNPDRYSYNQLLKGLCKTHQLDKAFAFVSDHMEVGGFCDTVSCNILIDAFC 484

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
              K   A  LF +         +  + + Y ++I+GL   G+ N    LF  M    I 
Sbjct: 485 KTKKVKSALELFKEM----GYKGMQADAVTYGTLINGLFSVGYYNLAEELFEQMLNAQID 540

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           P+  +YN ++   C   +++ A+   S  ++                 PD +++ ++I  
Sbjct: 541 PNVNLYNIMLHHLCKVGHFKRAQTIFSHMIQKE-------------VSPDTVTFNTLIYW 587

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           L K     +A  LF DM++RG+ PD + +  LI G    G+   A +++  +   G I D
Sbjct: 588 LGKRSRAIEALNLFKDMRTRGVEPDTLTFKYLISGLLDEGKSTLAYEVWEYMMENGIILD 647

Query: 349 TSSYNTLIN 357
                 LI+
Sbjct: 648 REVSERLIS 656


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 124/514 (24%), Positives = 220/514 (42%), Gaps = 76/514 (14%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L +A   F  M   +  P   ++N+++      + + +   L ERL   G +P  VS N 
Sbjct: 297 LGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNS 356

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA---------SG 178
           ++ C  K   V +A   L  +++K   P++ T   +I  LCM G+  EA         +G
Sbjct: 357 ILTCLGKKRKVDEALT-LFDVMKKDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAG 415

Query: 179 LFTKFVAFD------CRPNVI----------------PNVICYASIIDGLCKDGFVNKVR 216
           LF   ++ +      C+ N +                PN + Y S+IDGL K G ++   
Sbjct: 416 LFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAY 475

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            LF  M   G   +  +Y SLIR +      ED         ++++E +   G       
Sbjct: 476 RLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGH-------KIYKEMIRRGG------R 522

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PD+    + ++ + K   V+K + +F DMKS G +PDV  YS LI G    G+  +   +
Sbjct: 523 PDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNI 582

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC---------- 386
           F ++  +G   D  +YN +++   K  KV++A  +  EM    V P  +           
Sbjct: 583 FQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAK 642

Query: 387 ---ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
              + EA  LF    +   EL++ +++ L+DG  K  R+  A+ + +++ + G  PNV T
Sbjct: 643 IDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYT 702

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMA 485
           +  ++  L     I++A      M+E                  ++++  KA     +M 
Sbjct: 703 WNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQ 762

Query: 486 KRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519
           K+ + P+ +T + +   L K  N  +  +L   F
Sbjct: 763 KQGLIPNVVTYTTMISGLAKVGNITDAYSLFERF 796



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 129/523 (24%), Positives = 218/523 (41%), Gaps = 109/523 (20%)

Query: 87  MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALG 146
           +P F +L+ ALA +      + L + +    L PD V  N+ ++CF K   V  A+    
Sbjct: 211 VPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFH 270

Query: 147 RILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA--------------------- 185
            +      PD V+   ++  LC  G+  EA  LF +  A                     
Sbjct: 271 ELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAE 330

Query: 186 -FD-------------CRPNVI------------------------------PNVICYAS 201
            FD             C P+V+                              PN+  Y  
Sbjct: 331 RFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKKDAKPNISTYNI 390

Query: 202 IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261
           IID LC  G VN+   +  +M+  G++P+    N ++   C A   E+A          H
Sbjct: 391 IIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEA----------H 440

Query: 262 EEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
             F + + E G  C+P+ ++YCS+I+ L K   +D A  LF  M   G   + ++Y+SLI
Sbjct: 441 RIFESAS-ERG--CNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLI 497

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
             + + GR +D  K++  +   G  PD +  NT ++   K  +VE+  +++ +M S G  
Sbjct: 498 RNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFL 557

Query: 382 PD--NSCIL-----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
           PD  +  IL           E + +F+ +    F LD   +N +VDGLCKS ++  A+E+
Sbjct: 558 PDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEV 617

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------K 470
            +++      P V TY  ++ GL     +++AY L  + +                   K
Sbjct: 618 LEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGK 677

Query: 471 IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECM 513
           +    +A  +L +M K+ + P+  T + L + L K E   E +
Sbjct: 678 VGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEAL 720



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 156/327 (47%), Gaps = 20/327 (6%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+GEVE   A+  F  M      P + S++ L+  L           + + ++  G   D
Sbjct: 537 KAGEVEKGRAI--FEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALD 594

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             + N +++  CK   V  A+  L  +  K   P V T G ++ GL    +  EA  LF 
Sbjct: 595 ARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFE 654

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           +  +      +  NVI Y+S+IDG  K G +++  ++  +M  +G+ P+ + +NSL+   
Sbjct: 655 EAKS----KGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLM--- 707

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
                  DA   T    E+ E  +       + C P+  +Y  +IN LC+    +KA   
Sbjct: 708 -------DALVKTE---EIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVF 757

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           + +M+ +G+IP+VV Y+++I G   +G I DA  LF   ++ G IPD++S+N LI   S 
Sbjct: 758 WQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEGMSN 817

Query: 362 IEKVEEALSLYGEMISMGVRPD-NSCI 387
             +  EA  ++ E    G R +  +CI
Sbjct: 818 ANRPMEAYQVFEETRLRGCRLNVKTCI 844



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 156/346 (45%), Gaps = 37/346 (10%)

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF--VAFDCRPNVIPN 195
           + DAF  +G +    F P       LI  L    +   A  L  +   V ++       +
Sbjct: 157 LEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEARQPERALELLRQMQDVGYEV------S 210

Query: 196 VICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTS 255
           V  + +++  L ++G +     L  ++KG  + PD  +YN  I  +  A       G+  
Sbjct: 211 VPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKA-------GSVD 263

Query: 256 AALEL-HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
            A +  HE   +G         PD +SY S++  LCK   + +A+ELF  M++   +P  
Sbjct: 264 MAWKFFHELKAHG-------LRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCA 316

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
             Y+++I GY    R DDA KL   +   GCIP   S+N+++    K  KV+EAL+L+ +
Sbjct: 317 YAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLF-D 375

Query: 375 MISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
           ++    +P+ S              + EA ++   +       +L   N +VD LCK+ +
Sbjct: 376 VMKKDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQ 435

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           L  A  +F+     G  PN VTY  +I GL  +G I+ AY L   M
Sbjct: 436 LEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKM 481



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 13/153 (8%)

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR---PDNS 385
           R++DA ++  ++      P  S+Y  LI + ++  + E AL L  +M  +G     P  +
Sbjct: 156 RLEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEARQPERALELLRQMQDVGYEVSVPLFT 215

Query: 386 CILEAAE----------LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
            ++ A            L   +  +  E D+ ++N  +D   K+  +  AW+ F +L  +
Sbjct: 216 TLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAH 275

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           G  P+ V+YT M+  LC  G + +A +L   ME
Sbjct: 276 GLRPDDVSYTSMVWVLCKAGRLGEAEELFGQME 308


>gi|224136626|ref|XP_002322376.1| predicted protein [Populus trichocarpa]
 gi|222869372|gb|EEF06503.1| predicted protein [Populus trichocarpa]
          Length = 715

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 107/434 (24%), Positives = 187/434 (43%), Gaps = 46/434 (10%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           + +   G+ PD VS  ++   +C+M  +SD    L  ++R+ F  D  T   +I   C +
Sbjct: 220 DEMRVRGVCPDSVSYKLMAIAYCRMGRISDTDRWLKDMVRRGFVVDNATCTLMISTFCEK 279

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G  +     F K+V    +PN+I     + S+I+GLCK G + +   +  +M  +G  P+
Sbjct: 280 GFASRVFWYFDKWVELGLKPNLIN----FTSLINGLCKRGSIKQAFEMLEEMVKKGWKPN 335

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
            + + +LI   C        KG T  A  L  + V  +        P+V +Y S+I+  C
Sbjct: 336 VYTHTALIDGLC-------KKGWTEKAFRLFLKLVRSDDY-----KPNVHTYTSMIHGYC 383

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K+  +++A+ L   MK +G++P+   Y+ LIDG+   G  + A +L   +  EG   +  
Sbjct: 384 KEDKLNRAEMLLSRMKEQGLVPNTKTYTCLIDGHSKAGNFEKAYELMDLMGKEGFSANIF 443

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL-------------EAAELFRTL 397
           +YN  I+S  K  +  EA  L  +   +G++ D                  EA   F  +
Sbjct: 444 TYNAFIDSLCKKGRFLEACKLLKKGFRLGLQADTVTYTILISELCRRADTREALVFFSKM 503

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                + D+  +N L+    +  R+  + +LF +    G  P   TYT MICG C     
Sbjct: 504 FKAGVQPDMHTYNTLIAAFSRQRRMEESEKLFAEAVGLGLVPTKETYTSMICGYC----- 558

Query: 458 EKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLP 517
                       + R    A++  ++M+     PD +T   L   L K+    E   L  
Sbjct: 559 ------------RDRNVSLALKFFNRMSDHGCTPDSLTYGALISGLCKESKLDEACQLYE 606

Query: 518 SFLSRNQEESKLTR 531
           + + +     ++TR
Sbjct: 607 AMVDKGLSPCEVTR 620



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 108/425 (25%), Positives = 174/425 (40%), Gaps = 78/425 (18%)

Query: 116 IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
           +GL P+ ++   L+N  CK   +  AF  L  +++K + P+V T   LI GLC +G   +
Sbjct: 295 LGLKPNLINFTSLINGLCKRGSIKQAFEMLEEMVKKGWKPNVYTHTALIDGLCKKGWTEK 354

Query: 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA---- 231
           A  LF K V  D   +  PNV  Y S+I G CK+  +N+  +L   MK +G+ P+     
Sbjct: 355 AFRLFLKLVRSD---DYKPNVHTYTSMIHGYCKEDKLNRAEMLLSRMKEQGLVPNTKTYT 411

Query: 232 -------------------------------FVYNSLIRVYCCAVNWEDA---------- 250
                                          F YN+ I   C    + +A          
Sbjct: 412 CLIDGHSKAGNFEKAYELMDLMGKEGFSANIFTYNAFIDSLCKKGRFLEACKLLKKGFRL 471

Query: 251 --KGNTSAALELHEE------------FVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
             + +T     L  E            F +   + GV   PD+ +Y ++I +  +   ++
Sbjct: 472 GLQADTVTYTILISELCRRADTREALVFFSKMFKAGV--QPDMHTYNTLIAAFSRQRRME 529

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           ++++LF +    G++P    Y+S+I GYC    +  A K F  +   GC PD+ +Y  LI
Sbjct: 530 ESEKLFAEAVGLGLVPTKETYTSMICGYCRDRNVSLALKFFNRMSDHGCTPDSLTYGALI 589

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCIL----------EAAELFRTLHNTKFELDL 406
           +   K  K++EA  LY  M+  G+ P     L          ++A     L     +L +
Sbjct: 590 SGLCKESKLDEACQLYEAMVDKGLSPCEVTRLTLAYEYCKQDDSATAMVILERLDKKLWI 649

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
              N L+  LC   ++  A   F KL       + VT T      C E      Y L+ D
Sbjct: 650 RTVNTLIRKLCSERKVGMAVLFFHKLLDKDQNVDRVTLTAFTTA-CYESN---KYALVSD 705

Query: 467 MEEKI 471
           + E+I
Sbjct: 706 LSERI 710



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 22/171 (12%)

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353
           LV  A+ +F +M+ RG+ PD V Y  +   YC MGRI D  +    +   G + D ++  
Sbjct: 211 LVGYAENVFDEMRVRGVCPDSVSYKLMAIAYCRMGRISDTDRWLKDMVRRGFVVDNATCT 270

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLV 413
            +I+++ +          + + + +G++P+                      L  F  L+
Sbjct: 271 LMISTFCEKGFASRVFWYFDKWVELGLKPN----------------------LINFTSLI 308

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           +GLCK   ++ A+E+ +++ + G +PNV T+T +I GLC +G  EKA+ L 
Sbjct: 309 NGLCKRGSIKQAFEMLEEMVKKGWKPNVYTHTALIDGLCKKGWTEKAFRLF 359



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 110/288 (38%), Gaps = 55/288 (19%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N+ + +L  K  ++    L ++   +GL  D V+  IL++  C+     +A V   ++
Sbjct: 444 TYNAFIDSLCKKGRFLEACKLLKKGFRLGLQADTVTYTILISELCRRADTREALVFFSKM 503

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
            +    PD+ T   LI     Q +  E+  LF + V       ++P    Y S+I G C+
Sbjct: 504 FKAGVQPDMHTYNTLIAAFSRQRRMEESEKLFAEAVGL----GLVPTKETYTSMICGYCR 559

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           D  V+     F  M   G  PD+  Y +LI                              
Sbjct: 560 DRNVSLALKFFNRMSDHGCTPDSLTYGALI------------------------------ 589

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                             + LCK+  +D+A +L+  M  +G+ P  V   +L   YC   
Sbjct: 590 ------------------SGLCKESKLDEACQLYEAMVDKGLSPCEVTRLTLAYEYC--- 628

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
           + DD+    V +E         + NTLI       KV  A+  + +++
Sbjct: 629 KQDDSATAMVILERLDKKLWIRTVNTLIRKLCSERKVGMAVLFFHKLL 676



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 55/120 (45%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
             +  +AL FF+ M      P M ++N+L+ A + ++       L      +GL+P   +
Sbjct: 490 RADTREALVFFSKMFKAGVQPDMHTYNTLIAAFSRQRRMEESEKLFAEAVGLGLVPTKET 549

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
              ++  +C+   VS A     R+     +PD +T G LI GLC + K  EA  L+   V
Sbjct: 550 YTSMICGYCRDRNVSLALKFFNRMSDHGCTPDSLTYGALISGLCKESKLDEACQLYEAMV 609


>gi|356557791|ref|XP_003547194.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 793

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 115/434 (26%), Positives = 189/434 (43%), Gaps = 52/434 (11%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +   G+ P     N  +    K   +  A   L R+      PD+VT   LI+G C   +
Sbjct: 261 MQKAGVEPSLSICNTTIYVLVKGGKLEKALKFLERMQVTGIKPDIVTYNSLIKGYCDLNR 320

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM-KGRGIYPDA 231
             +A  L     +  C P+ +     Y +++  LCK+  + +V+ L   M     + PD 
Sbjct: 321 IEDALELIAGLPSKGCPPDKVS----YYTVMGFLCKEKKIEEVKCLMEKMVWNSNLIPDQ 376

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
             YN+LI +           G+   AL   +E  +         H D + Y +I++S C+
Sbjct: 377 VTYNTLIHML-------SKHGHADDALAFLKEAQDKG------FHIDKVGYSAIVHSFCQ 423

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
              +D+AK L +DM SRG  PDVV Y++++DG+C +GRID+A+K+   +   GC P+T S
Sbjct: 424 KGRMDEAKSLVIDMYSRGCNPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPNTVS 483

Query: 352 YNTLINSYSKIEKVEEALSL---------------YGEMISMGVRPDNSCILEAAELFRT 396
           Y  L+N      K  EA  +               YG ++  G+R +   + EA +L R 
Sbjct: 484 YTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGAVMH-GLRREGK-LSEACDLTRE 541

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           +    F       N L+  LC++ ++  A +  ++    G   NVV +T +I G C  G 
Sbjct: 542 MVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGD 601

Query: 457 IEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           +E A  +L DM    +                  PD +T + L + L K     E   L+
Sbjct: 602 MEAALSVLDDMYLSGKH-----------------PDAVTYTALFDALGKKGRLDEAAELI 644

Query: 517 PSFLSRNQEESKLT 530
              LS+  + + +T
Sbjct: 645 VKMLSKGLDPTPVT 658



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 172/373 (46%), Gaps = 29/373 (7%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           ER+   G+ PD V+ N L+  +C +  + DA   +  +  K   PD V+   ++  LC +
Sbjct: 294 ERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCKE 353

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
            K  E   L  K V      N+IP+ + Y ++I  L K G  +       + + +G + D
Sbjct: 354 KKIEEVKCLMEKMV---WNSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAQDKGFHID 410

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
              Y++++  +C     ++AK   S  ++++             C+PDV++Y +I++  C
Sbjct: 411 KVGYSAIVHSFCQKGRMDEAK---SLVIDMYSRG----------CNPDVVTYTAIVDGFC 457

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           +   +D+AK++   M   G  P+ V Y++L++G C  G+  +AR++    E     P+  
Sbjct: 458 RLGRIDEAKKILQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAI 517

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRP-------------DNSCILEAAELFRTL 397
           +Y  +++   +  K+ EA  L  EM+  G  P              N  ++EA +     
Sbjct: 518 TYGAVMHGLRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEEC 577

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
            N    +++  F  ++ G C+   + +A  +   +   G  P+ VTYT +   L  +G +
Sbjct: 578 LNKGCAINVVNFTTVIHGFCQIGDMEAALSVLDDMYLSGKHPDAVTYTALFDALGKKGRL 637

Query: 458 EKAYDLLPDMEEK 470
           ++A +L+  M  K
Sbjct: 638 DEAAELIVKMLSK 650



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 105/494 (21%), Positives = 206/494 (41%), Gaps = 86/494 (17%)

Query: 65  EVELNDALCFFNYMI-HMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV 123
           E ++ +  C    M+ +    P   ++N+L+  L+   +  + +   +     G   D V
Sbjct: 353 EKKIEEVKCLMEKMVWNSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAQDKGFHIDKV 412

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
             + +++ FC+   + +A   +  +  +  +PDVVT   ++ G C  G+  EA  +  + 
Sbjct: 413 GYSAIVHSFCQKGRMDEAKSLVIDMYSRGCNPDVVTYTAIVDGFCRLGRIDEAKKILQQM 472

Query: 184 VAFDCRPNVI-------------------------------PNVICYASIIDGLCKDGFV 212
               C+PN +                               PN I Y +++ GL ++G +
Sbjct: 473 YKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGAVMHGLRREGKL 532

Query: 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
           ++   L  +M  +G +P     N LI+  C      +AK       +  EE +N      
Sbjct: 533 SEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAK-------KYLEECLNKG---- 581

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
             C  +V+++ ++I+  C+   ++ A  +  DM   G  PD V Y++L D     GR+D+
Sbjct: 582 --CAINVVNFTTVIHGFCQIGDMEAALSVLDDMYLSGKHPDAVTYTALFDALGKKGRLDE 639

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392
           A +L V + S+G  P   +Y ++I+ YS+  +V++ L+L  +M+               +
Sbjct: 640 AAELIVKMLSKGLDPTPVTYRSVIHRYSQWGRVDDMLNLLEKMLK-------------RQ 686

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
            FR           TV+N +++ LC    L  A +L  K+ R   + +  T     C + 
Sbjct: 687 PFR-----------TVYNQVIEKLCDFGNLEEAEKLLGKVLRTASKVDANT-----CHVL 730

Query: 453 IEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHEC 512
           +E  ++K               + A ++  +M +R + PD      + + L  D    E 
Sbjct: 731 MESYLKKGV------------AISAYKVACRMFRRNLTPDLKLCEKVSKKLVLDGKLVEA 778

Query: 513 MNLLPSFLSRNQEE 526
            NL+  F+ R  ++
Sbjct: 779 DNLMLRFVERGIQQ 792



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 95/245 (38%), Gaps = 51/245 (20%)

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
           G+ C P+   Y  ++ S  +   +  A  +   M+  G+ P + + ++ I      G+++
Sbjct: 230 GIECPPEAFGY--VMVSYSRAGKLRNALRVLTLMQKAGVEPSLSICNTTIYVLVKGGKLE 287

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN------- 384
            A K    ++  G  PD  +YN+LI  Y  + ++E+AL L   + S G  PD        
Sbjct: 288 KALKFLERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYYTVM 347

Query: 385 ------------SCILE------------------------------AAELFRTLHNTKF 402
                        C++E                              A    +   +  F
Sbjct: 348 GFLCKEKKIEEVKCLMEKMVWNSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAQDKGF 407

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
            +D   ++ +V   C+  R+  A  L   +   G  P+VVTYT ++ G C  G I++A  
Sbjct: 408 HIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRGCNPDVVTYTAIVDGFCRLGRIDEAKK 467

Query: 463 LLPDM 467
           +L  M
Sbjct: 468 ILQQM 472



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 103/252 (40%), Gaps = 44/252 (17%)

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
           HP V  Y ++++ L K  L   A+ +   M  RGI      +  ++  Y   G++ +A +
Sbjct: 199 HPVV--YYTMLDVLSKTKLCQGARRVLRLMTRRGIECPPEAFGYVMVSYSRAGKLRNALR 256

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395
           +   ++  G  P  S  NT I    K  K+E+AL     M   G++P             
Sbjct: 257 VLTLMQKAGVEPSLSICNTTIYVLVKGGKLEKALKFLERMQVTGIKP------------- 303

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
                    D+  +N L+ G C   R+  A EL   LP  G  P+ V+Y  ++  LC E 
Sbjct: 304 ---------DIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEK 354

Query: 456 GIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
            IE+   L+  M                +    + PD++T + L  +L+K  +  + +  
Sbjct: 355 KIEEVKCLMEKM----------------VWNSNLIPDQVTYNTLIHMLSKHGHADDAL-- 396

Query: 516 LPSFLSRNQEES 527
             +FL   Q++ 
Sbjct: 397 --AFLKEAQDKG 406


>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 161/346 (46%), Gaps = 44/346 (12%)

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           NV  +  +++  CK+G +   + +F ++  R + P    +N+LI  YC         GN 
Sbjct: 239 NVYVFNILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYCKV-------GNL 291

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
                L                PDV +Y ++IN+LCK+  +D A  LF +M  RG+IP+ 
Sbjct: 292 DVGFRLKHHMEKSR------TRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPND 345

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           V++++LI G+   G+ID  ++ +  + S+G  PD   YNTL+N + K   +  A ++   
Sbjct: 346 VIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDG 405

Query: 375 MISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
           MI  G+RPD                +  A E+ + +     ELD   F+ L+ G+CK  R
Sbjct: 406 MIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGR 465

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------ 469
           +  A    +++ R G +P+ VTYT+M+   C +G  +  + LL +M+             
Sbjct: 466 VIDAERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNV 525

Query: 470 ------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENC 509
                 K+ +   A  LL  M    V PD+IT + L E  ++  N 
Sbjct: 526 LLNGLCKLGQMKNADMLLDAMLNVGVVPDDITYNTLLEGHHRHANA 571



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 131/301 (43%), Gaps = 61/301 (20%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           L P  VS N L+N +CK+  +   F     + +    PDV T   LI  LC + K   A 
Sbjct: 271 LRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTYSALINALCKENKMDGAH 330

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            LF +     C   +IPN + + ++I G  ++G ++ ++  +  M  +G+ PD  +YN+L
Sbjct: 331 RLFYEM----CERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTL 386

Query: 238 IRVYC------CAVNWEDA----------------------KGNTSAALELHEEFVNGNG 269
           +  +C       A N  D                        G+   ALE+ +E      
Sbjct: 387 VNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGI 446

Query: 270 EL------GVIC-----------------------HPDVLSYCSIINSLCKDVLVDKAKE 300
           EL       +IC                        PD ++Y  ++++ CK        +
Sbjct: 447 ELDRVGFSALICGMCKEGRVIDAERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFK 506

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           L  +M+S G IP+VV Y+ L++G C +G++ +A  L  ++ + G +PD  +YNTL+  + 
Sbjct: 507 LLKEMQSDGHIPNVVTYNVLLNGLCKLGQMKNADMLLDAMLNVGVVPDDITYNTLLEGHH 566

Query: 361 K 361
           +
Sbjct: 567 R 567



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 120/259 (46%), Gaps = 30/259 (11%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           +++ + GL PD V  N L+N FCK   +  A   +  ++R+   PD VT   LI G C  
Sbjct: 369 QKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRG 428

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVI-----CYASIIDGLCKDGFVNKVRVLFLDMKGR 225
           G             A + R  +  N I      ++++I G+CK+G V        +M   
Sbjct: 429 GDVD---------TALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAERALREMLRA 479

Query: 226 GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSI 285
           G+ PD   Y  ++  +C        KG+     +L +E +  +G +     P+V++Y  +
Sbjct: 480 GMKPDDVTYTMMMDAFC-------KKGDAQTGFKLLKE-MQSDGHI-----PNVVTYNVL 526

Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
           +N LCK   +  A  L   M + G++PD + Y++L++G+    R  +A K +      G 
Sbjct: 527 LNGLCKLGQMKNADMLLDAMLNVGVVPDDITYNTLLEGH---HRHANASKHYKQKPEIGI 583

Query: 346 IPDTSSYNTLINSYSKIEK 364
           + D +SY +L+N   +  K
Sbjct: 584 VADLASYKSLVNELYRASK 602



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 117/287 (40%), Gaps = 66/287 (22%)

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
            ++++   G   +V V++ L++ +C  G I DA+K+F  I      P   S+NTLIN Y 
Sbjct: 227 FYMEILDAGFPLNVYVFNILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYC 286

Query: 361 KI-----------------------------------EKVEEALSLYGEMISMGVRPD-- 383
           K+                                    K++ A  L+ EM   G+ P+  
Sbjct: 287 KVGNLDVGFRLKHHMEKSRTRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPNDV 346

Query: 384 -----------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
                      N  I    E ++ + +   + D+ ++N LV+G CK+  L +A  +   +
Sbjct: 347 IFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGM 406

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIREC 474
            R G  P+ VTYT +I G C  G ++ A ++  +M++                  K    
Sbjct: 407 IRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRV 466

Query: 475 LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
           + A   L +M +  +KPD++T +++ +   K  +      LL    S
Sbjct: 467 IDAERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQS 513



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 116/303 (38%), Gaps = 43/303 (14%)

Query: 258 LELHEEFVNGNGELG-VICHPDVLSYCSIINSLCK-------DVLVDKAKELFLDMKSRG 309
           L +HE FV     +  V+      S  S+  SL +       D LVD     ++D+   G
Sbjct: 128 LAIHEMFVEAQSLIELVVSRKGKNSASSVFISLVEMRGTPMCDFLVDALMITYMDL---G 184

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT----SSYNTLINSYSKIEKV 365
            IPDV+         C   R+       V I   G + D     +   T+   Y +I   
Sbjct: 185 FIPDVI--------QCF--RLSRKHNFVVPIRGCGNLLDRMMKLNPTGTVWGFYMEILDA 234

Query: 366 EEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
              L++Y   I M        I +A ++F  +        +  FN L++G CK   L   
Sbjct: 235 GFPLNVYVFNILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYCKVGNLDVG 294

Query: 426 WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK--IRECLKAIELLH- 482
           + L   + +    P+V TY+ +I  LC E  ++ A+ L  +M E+  I   +    L+H 
Sbjct: 295 FRLKHHMEKSRTRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHG 354

Query: 483 ---------------KMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEES 527
                          KM  + ++PD +  + L     K+ +     N++   + R     
Sbjct: 355 HSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPD 414

Query: 528 KLT 530
           K+T
Sbjct: 415 KVT 417


>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
 gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 908

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 120/433 (27%), Positives = 200/433 (46%), Gaps = 44/433 (10%)

Query: 58  SENSKSGEVE-------LNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGK--KYYVNF 106
           SE + SG +E       +  A    N +  +   P +  +NS++ +L   GK  +  + F
Sbjct: 329 SEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEAELLF 388

Query: 107 ICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166
             ++ER    GL P+ V+  IL++ F +   +  AF    +++    S  V +   +I  
Sbjct: 389 SVMAER----GLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMINC 444

Query: 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
            C  GK   A  LF + V       + P V  Y S+I G CKDG V K   L+ +M G+G
Sbjct: 445 QCKFGKMKMAELLFKEMVD----KGLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKG 500

Query: 227 IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII 286
           I P+   + +LI    C +N        + A +L +E V    EL ++  P+ ++Y  +I
Sbjct: 501 IAPNTVTFTALI-CGLCQIN------KMAEASKLFDEMV----ELKIL--PNEVTYNVLI 547

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
              C++    +A EL  +M  +G+ PD   Y  LI G C  GR+ +A++    +  +   
Sbjct: 548 EGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQR 607

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCILEAA---------ELF 394
            D   Y  L+  + K  +++EAL    EM+  G++ D    + ++  A         EL 
Sbjct: 608 LDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISGALNQNDRILFELL 667

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
           R +H    + D  ++  L+DG  KS  L+ A+E +  +   G  PN VTYT ++ GL   
Sbjct: 668 REMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKA 727

Query: 455 GGIEKAYDLLPDM 467
           G + +A  L   M
Sbjct: 728 GYVNEAKLLFKRM 740



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 174/397 (43%), Gaps = 48/397 (12%)

Query: 116 IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
           +G +P   +++ L+    KM  +  AF  L ++ +    P++     +I  LC  GK  E
Sbjct: 324 LGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEE 383

Query: 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
           A  LF+          + PN + Y  +IDG  +   ++     F  M   GI    + YN
Sbjct: 384 AELLFSVM----AERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYN 439

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           S+I   C         G    A  L +E V+          P V +Y S+I+  CKD LV
Sbjct: 440 SMINCQC-------KFGKMKMAELLFKEMVDKG------LKPTVATYTSLISGYCKDGLV 486

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
            KA +L+ +M  +GI P+ V +++LI G C + ++ +A KLF  +     +P+  +YN L
Sbjct: 487 PKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVL 546

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKF 402
           I  + +      A  L  EMI  G+ PD                + EA E    LH+   
Sbjct: 547 IEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQ 606

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
            LD   +  L+ G CK  R++ A    +++   G + ++V+Y V+I G            
Sbjct: 607 RLDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISGAL---------- 656

Query: 463 LLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
              +  ++I       ELL +M  + ++PD +  +IL
Sbjct: 657 ---NQNDRI-----LFELLREMHGKGMQPDNVIYTIL 685



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 109/414 (26%), Positives = 187/414 (45%), Gaps = 30/414 (7%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           D +   N M      P + + ++LL ALA  + +   + L + L   G+ PD     +++
Sbjct: 173 DGVLVVNLMRDYGLLPEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVV 232

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
            C C++   + A   + +      S  +VT    I GLC   +  EA  +          
Sbjct: 233 KCLCELKDFNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSL----GE 288

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
             +  +++ Y +++ GLC+         +  +M   G  P     + LI           
Sbjct: 289 KGLKADLVTYCTLVLGLCRIQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLI------- 341

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
             G+   A EL    +N  G+LGV+  P++  Y S+INSLCK   +++A+ LF  M  RG
Sbjct: 342 KMGSIEGAFEL----LNKVGKLGVV--PNLFVYNSMINSLCKTGKLEEAELLFSVMAERG 395

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
           + P+ V Y+ LIDG+    ++D A   F  +   G      SYN++IN   K  K++ A 
Sbjct: 396 LNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAE 455

Query: 370 SLYGEMISMGVRP-------------DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
            L+ EM+  G++P              +  + +A +L+  +       +   F  L+ GL
Sbjct: 456 LLFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGL 515

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           C+  ++  A +LF ++      PN VTY V+I G C EG   +A++LL +M +K
Sbjct: 516 CQINKMAEASKLFDEMVELKILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKK 569



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 184/409 (44%), Gaps = 30/409 (7%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           A   ++ M      P   +F +L+  L           L + +  + +LP+ V+ N+L+ 
Sbjct: 489 AFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIE 548

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
             C+    + AF  L  +++K  SPD  T   LI GLC  G+ +EA     +F+      
Sbjct: 549 GHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAK----EFINDLHHK 604

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
           +   + +CY +++ G CK+G + +  V   +M GRG+  D   Y  LI     A+N  D 
Sbjct: 605 HQRLDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLI---SGALNQND- 660

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
                   EL  E ++G G       PD + Y  +I+   K   + KA E +  M   G 
Sbjct: 661 ----RILFELLRE-MHGKG-----MQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGY 710

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
           +P+ V Y++L++G    G +++A+ LF  +     IP+  +Y   ++  +K   +E AL 
Sbjct: 711 VPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQ 770

Query: 371 LYGEM--------ISMGVRPDNSCIL----EAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
           L+  M        ++  +     C +    EAA+L   +       D   ++  +   CK
Sbjct: 771 LHNAMLQGSFANTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCK 830

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
              + +A ++++ + + G +P+ V +  +I   C+ G +++A  L  DM
Sbjct: 831 RGNVDAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRNDM 879



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 101/400 (25%), Positives = 174/400 (43%), Gaps = 50/400 (12%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
           P+V TL  L+  L    KF +   LF   V       V P+   Y  ++  LC+    NK
Sbjct: 188 PEVRTLSALLNALARIRKFRQVLELFDTLV----NAGVKPDCYIYTVVVKCLCELKDFNK 243

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN-WEDAKGNTSAALELHEEFVNGNGELGV 273
            + +    +G G       YN  I   C +   WE        A+E+        GE G+
Sbjct: 244 AKEIINQAEGNGCSLSIVTYNVFINGLCKSKRVWE--------AVEVKRSL----GEKGL 291

Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
               D+++YC+++  LC+    +   E+  +M   G +P     S LI+G   MG I+ A
Sbjct: 292 --KADLVTYCTLVLGLCRIQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGA 349

Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---SCILE- 389
            +L   +   G +P+   YN++INS  K  K+EEA  L+  M   G+ P++   + +++ 
Sbjct: 350 FELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDG 409

Query: 390 ---------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440
                    A   F  +        +  +N +++  CK  +++ A  LFK++   G +P 
Sbjct: 410 FGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPT 469

Query: 441 VVTYTVMICGLCIEGGIEKAYDLLPDMEEK------------------IRECLKAIELLH 482
           V TYT +I G C +G + KA+ L  +M  K                  I +  +A +L  
Sbjct: 470 VATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFD 529

Query: 483 KMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522
           +M +  + P+E+T ++L E   ++ N      LL   + +
Sbjct: 530 EMVELKILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKK 569



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 115/240 (47%), Gaps = 18/240 (7%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ PD V   IL++ F K   +  AF     ++ + + P+ VT   L+ GL   G   EA
Sbjct: 674 GMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEA 733

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             LF + +  +     IPN I Y   +D L K+G +     L   M  +G + +   YN 
Sbjct: 734 KLLFKRMLVGEA----IPNHITYGCFLDHLTKEGNMENALQLHNAML-QGSFANTVTYNI 788

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LIR YC    +++A    +  L++          +G+   PD ++Y + I   CK   VD
Sbjct: 789 LIRGYCQIGKFQEA----AKLLDVM---------IGIGMVPDCITYSTFIYEYCKRGNVD 835

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A +++  M  RG+ PD VV++ LI   CL G +D A +L   +   G  P  S+Y++L+
Sbjct: 836 AAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRNDMMLRGLKPTQSTYHSLM 895



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 108/265 (40%), Gaps = 48/265 (18%)

Query: 276 HPDVLSYCSIINSLCKDVLVDKAK-----------------ELFLDMKSRGIIPDVVVYS 318
           H    S+C +I+SL ++ L   A                  E F +   +        + 
Sbjct: 100 HHSTASFCILIHSLLQNNLFWPASSLLQTLLLRGLNPHQIFENFFESYKKYKFSSSSGFD 159

Query: 319 SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
            LI  Y    R+ D   +   +   G +P+  + + L+N+ ++I K  + L L+  +++ 
Sbjct: 160 MLIQHYVQNKRVMDGVLVVNLMRDYGLLPEVRTLSALLNALARIRKFRQVLELFDTLVNA 219

Query: 379 GVRPD-------NSCILE------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
           GV+PD         C+ E      A E+          L +  +N  ++GLCKS R+  A
Sbjct: 220 GVKPDCYIYTVVVKCLCELKDFNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKRVWEA 279

Query: 426 WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE---------------- 469
            E+ + L   G + ++VTY  ++ GLC     E   +++ +M E                
Sbjct: 280 VEVKRSLGEKGLKADLVTYCTLVLGLCRIQEFEVGMEMMDEMIELGYVPSEAAVSGLIEG 339

Query: 470 --KIRECLKAIELLHKMAKRYVKPD 492
             K+     A ELL+K+ K  V P+
Sbjct: 340 LIKMGSIEGAFELLNKVGKLGVVPN 364


>gi|218194637|gb|EEC77064.1| hypothetical protein OsI_15455 [Oryza sativa Indica Group]
          Length = 864

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 186/420 (44%), Gaps = 39/420 (9%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLN------TIGLLPDF 122
           N+A C F+ M+   P P + S++++L   A         CL++  N      T G+ P+ 
Sbjct: 347 NEAKCIFDSMVLKGPKPDIISYSTMLHGYA----TATDSCLADVHNIFNLMLTKGIAPNK 402

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
              NIL+N + +   +  A +    +  K   PD VT   +I  LC  G+  +A   F  
Sbjct: 403 HVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNH 462

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
            V       V P+   Y  +I G C  G + K + L  +M  + I P    Y S I    
Sbjct: 463 MVDI----GVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNL 518

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
           C       +G  +   ++ +  V   G+      P+V+++ S++   C    +++A  L 
Sbjct: 519 CK------EGRVAEGKDIMDMMVQ-TGQ-----RPNVVTFNSLMEGYCLVGNMEEAFALL 566

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
             M S GI P+  +Y +L+DGYC  GRIDDA  +F  +  +G  P +  Y+ +++   + 
Sbjct: 567 DAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQA 626

Query: 363 EKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVF 409
            +   A  ++ EMI  G                 N+C  EA  L   L     + D+  F
Sbjct: 627 RRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITF 686

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           N ++  + K  R + A ELF  +  YG  PN+ TY++MI  L  E   E+A +L   +E+
Sbjct: 687 NIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEK 746



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/423 (25%), Positives = 189/423 (44%), Gaps = 31/423 (7%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K GEV+   A C F  M+     P +   NS++  L   K       + +++   G+ PD
Sbjct: 202 KDGEVD--KAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPD 259

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             + +++++  CK   +  A   L +++     P+ +T   LI G  + G + E+  +F 
Sbjct: 260 LFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFK 319

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           +  +  C   VIP V    S I  L K G  N+ + +F  M  +G  PD   Y++++  Y
Sbjct: 320 QMSS--C--GVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGY 375

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
             A +        S   ++H  F   N  L     P+   +  +IN+  +  ++DKA  +
Sbjct: 376 ATATD--------SCLADVHNIF---NLMLTKGIAPNKHVFNILINAYARCGMMDKAMLI 424

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F DM+++G+IPD V ++++I   C +GR+DDA   F  +   G  P  + Y  LI     
Sbjct: 425 FEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCN 484

Query: 362 IEKVEEALSLYGEMISMGVRP----------DNSC----ILEAAELFRTLHNTKFELDLT 407
             ++ +A  L  EM++  + P          +N C    + E  ++   +  T    ++ 
Sbjct: 485 HGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVV 544

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            FN L++G C    +  A+ L   +   G EPN   Y  ++ G C  G I+ A  +  DM
Sbjct: 545 TFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDM 604

Query: 468 EEK 470
             K
Sbjct: 605 LHK 607



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 186/394 (47%), Gaps = 43/394 (10%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           RL   GL PD  S +++   F K   V  A      ++ +   P ++    +I+ LC   
Sbjct: 181 RLLKNGLGPDDFSYSLIYG-FVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMK 239

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
           +  +A  +  K V       + P++  Y+ IIDGLCK   ++K   +   M   G  P++
Sbjct: 240 EMDKAESIVQKMV----DSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNS 295

Query: 232 FVYNSLIRVYCCAVNWEDA----KGNTSAALE---------LHEEFVNG-NGELGVIC-- 275
             YNSLI  Y  +  W ++    K  +S  +          +H  F +G   E   I   
Sbjct: 296 ITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDS 355

Query: 276 ------HPDVLSYCSIIN--SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
                  PD++SY ++++  +   D  +     +F  M ++GI P+  V++ LI+ Y   
Sbjct: 356 MVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARC 415

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS-- 385
           G +D A  +F  ++++G IPDT ++ T+I+S  +I ++++AL  +  M+ +GV P  +  
Sbjct: 416 GMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVY 475

Query: 386 -CILE----------AAELFRTLHNTKF-ELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
            C+++          A EL   + N       +  F+ +++ LCK  R+    ++   + 
Sbjct: 476 GCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMV 535

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           + G  PNVVT+  ++ G C+ G +E+A+ LL  M
Sbjct: 536 QTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAM 569



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 101/405 (24%), Positives = 171/405 (42%), Gaps = 86/405 (21%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P   + NIL++C+                 R+V  PD+        GL + G+  + +GL
Sbjct: 154 PTIHTYNILIDCY-----------------RRVHRPDL--------GLAIVGRLLK-NGL 187

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
                         P+   Y S+I G  KDG V+K   LFL+M  +G+ P   + NS+I+
Sbjct: 188 G-------------PDDFSY-SLIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIK 233

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C     + A           E  V    + G+   PD+ +Y  II+ LCK   +DKA+
Sbjct: 234 ELCKMKEMDKA-----------ESIVQKMVDSGIA--PDLFTYSLIIDGLCKSKAMDKAE 280

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            +   M   G  P+ + Y+SLI GY + G  +++ ++F  + S G IP   + N+ I++ 
Sbjct: 281 RVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHAL 340

Query: 360 SKIEKVEEALSLYGEMISMGVRPD---------------NSCILEAAELFRTLHNTKFEL 404
            K  +  EA  ++  M+  G +PD               +SC+ +   +F  +       
Sbjct: 341 FKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAP 400

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           +  VFN L++   +   +  A  +F+ +   G  P+ VT+  +I  LC  G ++ A    
Sbjct: 401 NKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKF 460

Query: 465 PDM-------EEKIRECL-----------KAIELLHKMAKRYVKP 491
             M        E +  CL           KA EL+ +M  + + P
Sbjct: 461 NHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPP 505



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 144/312 (46%), Gaps = 28/312 (8%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLL------GALAGKKYYVNFICLSERLNTIGLLP 120
            L+DAL  FN+M+ +   P    +  L+      G L   K  +     SE +N     P
Sbjct: 452 RLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELI-----SEMMNKDIPPP 506

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
                + ++N  CK   V++    +  +++    P+VVT   L+ G C+ G   EA  L 
Sbjct: 507 GVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALL 566

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
               +      + PN   Y +++DG CK+G ++    +F DM  +G+ P + +Y+ ++  
Sbjct: 567 DAMASI----GIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILH- 621

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
                    A+  T+A    HE   +G     V  H    +Y  ++  LC++   D+A  
Sbjct: 622 -----GLFQARRTTAAKKMFHEMIESGTT---VSIH----TYGVVLGGLCRNNCTDEANM 669

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           L   + +  +  D++ ++ +I     +GR  +A++LF +I + G +P+  +Y+ +I +  
Sbjct: 670 LLEKLFAMNVKFDIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLI 729

Query: 361 KIEKVEEALSLY 372
           K E  EEA +L+
Sbjct: 730 KEESYEEADNLF 741


>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g09680
 gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
 gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 607

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 162/345 (46%), Gaps = 44/345 (12%)

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           NV  +  +++  CK+G ++  + +F ++  R + P    +N+LI  YC         GN 
Sbjct: 239 NVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKV-------GNL 291

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
                L  +             PDV +Y ++IN+LCK+  +D A  LF +M  RG+IP+ 
Sbjct: 292 DEGFRLKHQMEKSR------TRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPND 345

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           V++++LI G+   G ID  ++ +  + S+G  PD   YNTL+N + K   +  A ++   
Sbjct: 346 VIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDG 405

Query: 375 MISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
           MI  G+RPD                +  A E+ + +     ELD   F+ LV G+CK  R
Sbjct: 406 MIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGR 465

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------ 469
           +  A    +++ R G +P+ VTYT+M+   C +G  +  + LL +M+             
Sbjct: 466 VIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNV 525

Query: 470 ------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDEN 508
                 K+ +   A  LL  M    V PD+IT + L E  ++  N
Sbjct: 526 LLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLEGHHRHAN 570



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 161/350 (46%), Gaps = 39/350 (11%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           L P  VS N L+N +CK+  + + F    ++ +    PDV T   LI  LC + K   A 
Sbjct: 271 LQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAH 330

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
           GLF +     C+  +IPN + + ++I G  ++G ++ ++  +  M  +G+ PD  +YN+L
Sbjct: 331 GLFDEM----CKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTL 386

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           +  +C         G+  AA       V+G    G+   PD ++Y ++I+  C+   V+ 
Sbjct: 387 VNGFC-------KNGDLVAA----RNIVDGMIRRGL--RPDKITYTTLIDGFCRGGDVET 433

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A E+  +M   GI  D V +S+L+ G C  GR+ DA +    +   G  PD  +Y  +++
Sbjct: 434 ALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMD 493

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
           ++ K    +    L  EM S G  P                       +  +N L++GLC
Sbjct: 494 AFCKKGDAQTGFKLLKEMQSDGHVP----------------------SVVTYNVLLNGLC 531

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           K  ++++A  L   +   G  P+ +TY  ++ G        K Y   P++
Sbjct: 532 KLGQMKNADMLLDAMLNIGVVPDDITYNTLLEGHHRHANSSKRYIQKPEI 581



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 121/296 (40%), Gaps = 66/296 (22%)

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
            ++++   G   +V V++ L++ +C  G I DA+K+F  I      P   S+NTLIN Y 
Sbjct: 227 FYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYC 286

Query: 361 KIEKVEEALSLYGEMISMGVRPD---NSCILEA-------------------------AE 392
           K+  ++E   L  +M     RPD    S ++ A                           
Sbjct: 287 KVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDV 346

Query: 393 LFRTL---HNTKFELDL-----------------TVFNCLVDGLCKSWRLRSAWELFKKL 432
           +F TL   H+   E+DL                  ++N LV+G CK+  L +A  +   +
Sbjct: 347 IFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGM 406

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIREC 474
            R G  P+ +TYT +I G C  G +E A ++  +M++                  K    
Sbjct: 407 IRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRV 466

Query: 475 LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           + A   L +M +  +KPD++T +++ +   K  +      LL    S     S +T
Sbjct: 467 IDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVT 522


>gi|147797621|emb|CAN62945.1| hypothetical protein VITISV_002230 [Vitis vinifera]
          Length = 912

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 169/360 (46%), Gaps = 36/360 (10%)

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRK-VFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           S N ++  F K   +  A     +I+++ V  PDV T   +IRG C  G    A  +F +
Sbjct: 219 SYNAILGVFVKANRIMLARAVFDQIVKEGVVKPDVSTYTTIIRGYCKMGMIENAKNVFDE 278

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM-KGRGIYPDAFVYNSLIRVY 241
                C+PN++     Y ++I+G CK G +     +   M +     PD   Y +LI  Y
Sbjct: 279 M---GCKPNLVT----YNTMINGFCKKGLMESAMKIVDQMTETEDCMPDTVTYTTLIDGY 331

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C        +G    A++  EE V+ N      C P+VL+Y +II  LC +  VD+AK +
Sbjct: 332 C-------KRGELEEAMKYMEEMVSRN------CEPNVLTYNAIIYGLCLNGNVDEAKRM 378

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
              M+  G+  +V  ++S++ G C++G++DDA +    +   G   D  +Y  ++N Y K
Sbjct: 379 MTRMRLNGLKDNVATHTSILKGLCVVGKLDDAARHLKEMVGLGMEADAKAYGVVVNEYCK 438

Query: 362 IEKVEEALSLYGEMISMGVRPDNSC------IL-------EAAELFRTLHNTKFELDLTV 408
           I K ++A+SL  EM S G+ P  S       IL       +A  + R +       +   
Sbjct: 439 IGKADDAISLLKEMKSRGINPSVSSFNAVFRILVESGKTDKAGLILRQMKQLGCTPNFLS 498

Query: 409 FNCLVDGLCKS-WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           ++ ++DGLCK+  R+    E    + R G   +   Y+ ++ G C +G  + A  L  +M
Sbjct: 499 YSTVIDGLCKAKGRMHEVEEFVDDMCRNGHHLDASMYSWLVKGYCEDGNADMAMRLFCEM 558



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 143/311 (45%), Gaps = 40/311 (12%)

Query: 162 CLIRGLCMQGKFTEASGLFTKFVAFD--CRPNVI-PNVICYASIIDGLCKDGFVNKVRVL 218
           CL     + G F +A+ +      FD   +  V+ P+V  Y +II G CK G +   + +
Sbjct: 216 CLFSYNAILGVFVKANRIMLARAVFDQIVKEGVVKPDVSTYTTIIRGYCKMGMIENAKNV 275

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD 278
           F +M   G  P+   YN++I  +C        KG   +A+++ ++           C PD
Sbjct: 276 FDEM---GCKPNLVTYNTMINGFC-------KKGLMESAMKIVDQMTETED-----CMPD 320

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
            ++Y ++I+  CK   +++A +   +M SR   P+V+ Y+++I G CL G +D+A+++  
Sbjct: 321 TVTYTTLIDGYCKRGELEEAMKYMEEMVSRNCEPNVLTYNAIIYGLCLNGNVDEAKRMMT 380

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398
            +   G   + +++ +++     + K+++A     EM+ +G+                  
Sbjct: 381 RMRLNGLKDNVATHTSILKGLCVVGKLDDAARHLKEMVGLGM------------------ 422

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
               E D   +  +V+  CK  +   A  L K++   G  P+V ++  +   L   G  +
Sbjct: 423 ----EADAKAYGVVVNEYCKIGKADDAISLLKEMKSRGINPSVSSFNAVFRILVESGKTD 478

Query: 459 KAYDLLPDMEE 469
           KA  +L  M++
Sbjct: 479 KAGLILRQMKQ 489



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 139/307 (45%), Gaps = 21/307 (6%)

Query: 76  NYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLN-TIGLLPDFVSLNILMNCFCK 134
           N    M   P + ++N+++     K    + + + +++  T   +PD V+   L++ +CK
Sbjct: 274 NVFDEMGCKPNLVTYNTMINGFCKKGLMESAMKIVDQMTETEDCMPDTVTYTTLIDGYCK 333

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
              + +A   +  ++ +   P+V+T   +I GLC+ G   EA  + T+      R N + 
Sbjct: 334 RGELEEAMKYMEEMVSRNCEPNVLTYNAIIYGLCLNGNVDEAKRMMTRM-----RLNGLK 388

Query: 195 -NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
            NV  + SI+ GLC  G ++       +M G G+  DA  Y  ++  YC     +DA   
Sbjct: 389 DNVATHTSILKGLCVVGKLDDAARHLKEMVGLGMEADAKAYGVVVNEYCKIGKADDA--- 445

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
            S   E+    +N          P V S+ ++   L +    DKA  +   MK  G  P+
Sbjct: 446 ISLLKEMKSRGIN----------PSVSSFNAVFRILVESGKTDKAGLILRQMKQLGCTPN 495

Query: 314 VVVYSSLIDGYC-LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
            + YS++IDG C   GR+ +  +    +   G   D S Y+ L+  Y +    + A+ L+
Sbjct: 496 FLSYSTVIDGLCKAKGRMHEVEEFVDDMCRNGHHLDASMYSWLVKGYCEDGNADMAMRLF 555

Query: 373 GEMISMG 379
            EM+ MG
Sbjct: 556 CEMLDMG 562



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 104/254 (40%), Gaps = 50/254 (19%)

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF-- 337
           L Y +I + L    L   A  L   ++S   + D    +  +  Y   G I  A   F  
Sbjct: 152 LCYVAITDLLISHGLFSTASSL---LQSHHRLSDFAA-AKFVKAYGDRGDIRGAIHWFHR 207

Query: 338 -VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
              +ES  C+    SYN ++  + K  ++  A +++ +++  GV                
Sbjct: 208 AKKMESGRCL---FSYNAILGVFVKANRIMLARAVFDQIVKEGV---------------- 248

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
                 + D++ +  ++ G CK   + +A  +F ++   G +PN+VTY  MI G C +G 
Sbjct: 249 -----VKPDVSTYTTIIRGYCKMGMIENAKNVFDEM---GCKPNLVTYNTMINGFCKKGL 300

Query: 457 IEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           +E A  ++  M E   +C+               PD +T + L +   K     E M  +
Sbjct: 301 MESAMKIVDQMTE-TEDCM---------------PDTVTYTTLIDGYCKRGELEEAMKYM 344

Query: 517 PSFLSRNQEESKLT 530
              +SRN E + LT
Sbjct: 345 EEMVSRNCEPNVLT 358


>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 864

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 116/417 (27%), Positives = 185/417 (44%), Gaps = 60/417 (14%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ VS +IL++  C++  + +AF    ++  K   P   T   LI+ LC +G   +A  L
Sbjct: 264 PNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNL 323

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
           F + +A  C+PNV      Y  +IDGLC+DG + +   +   M   GI+P    YN+LI 
Sbjct: 324 FDEMIARGCKPNVHT----YTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALIN 379

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI----CHPDVLSYCSIINSLCKDVLV 295
            YC         G    A EL          L V+    C P+V ++  ++  LC+    
Sbjct: 380 GYC-------KDGRVVPAFEL----------LTVMEKRACKPNVRTFNELMEGLCRVGKP 422

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
            KA  L   M   G+ PD+V Y+ LIDG C  G ++ A KL  S+ S    PD  ++  +
Sbjct: 423 YKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAI 482

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKF 402
           IN++ K  K + A +  G M+  G+  D                  +A  +  TL   + 
Sbjct: 483 INAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRM 542

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
                  N ++D L K  +L+    +  K+ + G  P+VVTYT ++ GL   G I  ++ 
Sbjct: 543 LTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFR 602

Query: 463 LLPDMEEKIRECL--------------------KAIELLHKMAKRYVKPDEITVSIL 499
           +L  M  K+  CL                    +A +LL  M    V P+ +T +++
Sbjct: 603 MLELM--KLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVM 657



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 168/387 (43%), Gaps = 46/387 (11%)

Query: 88  PSFNSLLGALA----GKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           P ++SLL +LA    G   YV +     R+   G +   +    ++N  CK      A +
Sbjct: 161 PCYSSLLMSLAKLDLGFLAYVTY----RRMEADGFVVGMIDYRTIVNALCKNGYTEAAEM 216

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
            + +IL+  F  D   +  L+ G C      +A  +F             PN + Y+ +I
Sbjct: 217 FMCKILKVGFLLDSHIVTSLLLGFCRGLNLRDALKVFD---LMSREGTCAPNSVSYSILI 273

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
            GLC+ G + +   L   M  +G  P    Y  LI+  C        +G    A  L +E
Sbjct: 274 HGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALC-------DRGLIDKAFNLFDE 326

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
            +         C P+V +Y  +I+ LC+D  +++A  +   M   GI P V+ Y++LI+G
Sbjct: 327 MIARG------CKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALING 380

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           YC  GR+  A +L   +E   C P+  ++N L+    ++ K  +A+ L   M+  G+ P 
Sbjct: 381 YCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSP- 439

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                                D+  +N L+DGLC+   +  A++L   +  +  EP+ +T
Sbjct: 440 ---------------------DIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLT 478

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEK 470
           +T +I   C +G  + A   L  M  K
Sbjct: 479 FTAIINAFCKQGKADVASAFLGLMLRK 505



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 176/403 (43%), Gaps = 39/403 (9%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            L +A    + M      P   ++  L+ AL  +        L + +   G  P+  +  
Sbjct: 281 RLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYT 340

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +L++  C+   + +A     ++++    P V+T   LI G C  G+   A  L T     
Sbjct: 341 VLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKR 400

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C+PNV      +  +++GLC+ G   K   L   M   G+ PD   YN LI   C    
Sbjct: 401 ACKPNVRT----FNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLC---- 452

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
               +G+ + A +L     + + E      PD L++ +IIN+ CK    D A      M 
Sbjct: 453 ---REGHMNVAYKLLTSMNSFDLE------PDCLTFTAIINAFCKQGKADVASAFLGLML 503

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            +GI  D V  ++LIDG C +G+  DA  +  ++     +    S N +++  SK  K++
Sbjct: 504 RKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILDMLSKGCKLK 563

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           E L++ G++  +G+ P                       +  +  LVDGL +S  +  ++
Sbjct: 564 EELAMLGKINKLGLVP----------------------SVVTYTTLVDGLIRSGDISGSF 601

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
            + + +   G  PNV  YT++I GLC  G +E+A  LL  M++
Sbjct: 602 RMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQD 644



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 152/338 (44%), Gaps = 51/338 (15%)

Query: 193 IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252
           +  +I Y +I++ LCK+G+     +    +   G   D+ +  SL+  +C  +N  DA  
Sbjct: 192 VVGMIDYRTIVNALCKNGYTEAAEMFMCKILKVGFLLDSHIVTSLLLGFCRGLNLRDA-- 249

Query: 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
                L++ +  ++  G     C P+ +SY  +I+ LC+   +++A  L   M  +G  P
Sbjct: 250 -----LKVFD-LMSREGT----CAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQP 299

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
               Y+ LI   C  G ID A  LF  + + GC P+  +Y  LI+   +  K+EEA  + 
Sbjct: 300 STRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVC 359

Query: 373 GEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
            +M+  G+ P                       +  +N L++G CK  R+  A+EL   +
Sbjct: 360 RKMVKDGIFPS----------------------VITYNALINGYCKDGRVVPAFELLTVM 397

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPD 492
            +   +PNV T+  ++ GLC  G   K Y              KA+ LL +M    + PD
Sbjct: 398 EKRACKPNVRTFNELMEGLCRVG---KPY--------------KAVHLLKRMLDNGLSPD 440

Query: 493 EITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
            ++ ++L + L ++ + +    LL S  S + E   LT
Sbjct: 441 IVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLT 478



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 112/508 (22%), Positives = 198/508 (38%), Gaps = 76/508 (14%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           + G++E  + +C    M+     P + ++N+L+         V    L   +      P+
Sbjct: 348 RDGKIEEANGVC--RKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPN 405

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             + N LM   C++     A   L R+L    SPD+V+   LI GLC +G    A  L T
Sbjct: 406 VRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLT 465

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
              +FD  P+ +     + +II+  CK G  +        M  +GI  D     +LI   
Sbjct: 466 SMNSFDLEPDCLT----FTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGV 521

Query: 242 CCAVNWEDAK----------------------GNTSAALELHEEF--VNGNGELGVICHP 277
           C      DA                          S   +L EE   +    +LG++  P
Sbjct: 522 CNVGKTRDALFILETLVKMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGLV--P 579

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
            V++Y ++++ L +   +  +  +   MK  G +P+V  Y+ +I+G C  GR+++A KL 
Sbjct: 580 SVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLL 639

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV----------------- 380
            +++  G  P+  +Y  ++  Y    K++ AL     M+  G                  
Sbjct: 640 SAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLRGFVLS 699

Query: 381 -----RPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
                  D  CI E   +   L  +     L +F  LV  LCK  R              
Sbjct: 700 QKGIRETDPECIKELISVVEQLGGSTS--GLCIF--LVTRLCKEGRT------------- 742

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEIT 495
             E N +  T++  G+     +EKA D++ +     ++  K +EL+  + K    P   +
Sbjct: 743 -DESNGLVQTILKSGVF----LEKAIDIIMESYCSKKKHTKCVELITLVLKSGFVPSFKS 797

Query: 496 VSILEELLNKDENCHECMNLLPSFLSRN 523
             ++ + L K+ +      L+   L+ N
Sbjct: 798 FCLVIQGLKKEGDTERARELVMELLTSN 825



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 133/331 (40%), Gaps = 22/331 (6%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DAL     ++ M+      S N +L  L+        + +  ++N +GL+P  V+   L+
Sbjct: 529 DALFILETLVKMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLV 588

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           +   +   +S +F  L  +      P+V     +I GLC  G+  EA  L +        
Sbjct: 589 DGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQD---- 644

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
             V PN + Y  ++ G   +G +++       M  RG   +  +Y+SL+R +  +     
Sbjct: 645 SGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLRGFVLS----- 699

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCS-IINSLCKDVLVDKAKELFLDMKSR 308
            KG      E  +E ++   +LG          C  ++  LCK+   D++  L   +   
Sbjct: 700 QKGIRETDPECIKELISVVEQLG----GSTSGLCIFLVTRLCKEGRTDESNGLVQTILKS 755

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G+  +  +   +++ YC   +     +L   +   G +P   S+  +I    K    E A
Sbjct: 756 GVFLEKAI-DIIMESYCSKKKHTKCVELITLVLKSGFVPSFKSFCLVIQGLKKEGDTERA 814

Query: 369 LSLYGEMIS-------MGVRPDNSCILEAAE 392
             L  E+++        GV P   C++E  +
Sbjct: 815 RELVMELLTSNGVVEKSGVLPYVECLMETGD 845


>gi|302776342|ref|XP_002971343.1| hypothetical protein SELMODRAFT_411983 [Selaginella moellendorffii]
 gi|300161325|gb|EFJ27941.1| hypothetical protein SELMODRAFT_411983 [Selaginella moellendorffii]
          Length = 584

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 139/544 (25%), Positives = 230/544 (42%), Gaps = 86/544 (15%)

Query: 22  RNSKKPISLNSENEPSSLHSNSVSTVE--EKTKLLKYLSENSKSGEV------------- 66
           R S    SL+    P + H+  ++  E  +     ++L E + +G +             
Sbjct: 10  RRSLYHRSLHLPPSPDAAHAQLLALHESGDANAAARFLREKTAAGSIFPGFLSSVVIDRA 69

Query: 67  ----ELNDALCFFNYMIHM-QPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
               +L  AL     M+H   P P   +F SL+ AL+      +     E +   G+ PD
Sbjct: 70  CKSGDLRGALLILATMLHSGTPPPNQHAFASLIDALSKSTRLADAARALELMRDAGIHPD 129

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRK-VFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
            V+  +++  FCK   +  A+     +++     PD    G LI G C + +   A  L 
Sbjct: 130 VVTFTVMIRGFCKNRMMERAWEIFQEMIKSNRCQPDCFLYGVLIDGYCKELRMDRALELL 189

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCK-DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
            +         + P+V+ Y SI+DGLC+ + F+   + L   M  +G  P    Y SLIR
Sbjct: 190 REM---RVERRIQPDVVIYNSIVDGLCRSNRFLEAWKFLDETMVLQGCSPTVVTYTSLIR 246

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C A   + A    +A LE                 P ++SY  II+ L K   V  A 
Sbjct: 247 GACKAKKMKLAVRIWNAMLERK-------------IQPTIVSYSVIIDGLSKAGRVYDAY 293

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            +  +M++ G   +VV+Y++LIDG C  G +DDA  L+  ++  G  P+  +Y TLI+++
Sbjct: 294 RVVREMETLGCELNVVIYTTLIDGLCKSGFLDDAYALYRIMKRSGAFPNQRTYATLIDTF 353

Query: 360 SKIEKVEEALSL--------------YGEMISMGVRPDNSCILEAAELFRTLHNTKFELD 405
            + ++ E AL L              Y  ++S   R     + +A  LFR +       D
Sbjct: 354 CRNDRTETALGLFDHIRDYCPLDVAMYTAVVSGLCRERR--LDDARALFREMRLAGVSAD 411

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP----NVVTYTVMICGLCIEGGIEKAY 461
              +N L+ G  +S R   A+ + ++L   G +P    N++TY  +I G C+E G     
Sbjct: 412 THAYNVLLHGAFRSERPEEAFRILEEL---GDDPGCVANLLTYNTVIAGCCLESG----- 463

Query: 462 DLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVS-ILEELLNKDENCHE---CMNLLP 517
                           + L ++M +R + PD  T S +++ LL   E       C  +L 
Sbjct: 464 ----------------MVLFYEMRQRGIAPDFATYSALIDRLLGSGEIGRAFDLCEEMLA 507

Query: 518 SFLS 521
           S LS
Sbjct: 508 SGLS 511



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 145/352 (41%), Gaps = 52/352 (14%)

Query: 65  EVELNDALCFFNYM-IHMQPTPFMPSFNSLLGAL-AGKKYYVNFICLSERLNTIGLLPDF 122
           E+ ++ AL     M +  +  P +  +NS++  L    ++   +  L E +   G  P  
Sbjct: 179 ELRMDRALELLREMRVERRIQPDVVIYNSIVDGLCRSNRFLEAWKFLDETMVLQGCSPTV 238

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           V+   L+   CK   +  A      +L +   P +V+   +I GL   G+  +A  +  +
Sbjct: 239 VTYTSLIRGACKAKKMKLAVRIWNAMLERKIQPTIVSYSVIIDGLSKAGRVYDAYRVVRE 298

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
                C  NV+     Y ++IDGLCK GF++    L+  MK  G +P+   Y +LI  +C
Sbjct: 299 METLGCELNVV----IYTTLIDGLCKSGFLDDAYALYRIMKRSGAFPNQRTYATLIDTFC 354

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
                      T  AL L +   +        C  DV  Y ++++ LC++  +D A+ LF
Sbjct: 355 -------RNDRTETALGLFDHIRD-------YCPLDVAMYTAVVSGLCRERRLDDARALF 400

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK--------------------------- 335
            +M+  G+  D   Y+ L+ G     R ++A +                           
Sbjct: 401 REMRLAGVSADTHAYNVLLHGAFRSERPEEAFRILEELGDDPGCVANLLTYNTVIAGCCL 460

Query: 336 -----LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
                LF  +   G  PD ++Y+ LI+      ++  A  L  EM++ G+ P
Sbjct: 461 ESGMVLFYEMRQRGIAPDFATYSALIDRLLGSGEIGRAFDLCEEMLASGLSP 512


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/411 (25%), Positives = 184/411 (44%), Gaps = 30/411 (7%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DA    N +  +   P +  +N+L+ +L     +     L + +   GL  + V+ +IL+
Sbjct: 349 DAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILI 408

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           + FC+   +  A   LG+++       V     LI G C  G  + A   F + +     
Sbjct: 409 DSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMID---- 464

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
             + P V+ Y S+I G C  G +++   L+ +M G+GI P+ + + +LI     A    D
Sbjct: 465 KGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTD 524

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
           A         L +E +  N        P+ ++Y  +I   CK+    KA EL   M  +G
Sbjct: 525 A-------FRLFDEMLEQN------MMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKG 571

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
           ++PD   Y  LI   C  GR+ +A+K    +  E    +   Y+ L++ Y K  ++ +AL
Sbjct: 572 LVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDAL 631

Query: 370 SLYGEMISMGVRPDNSCILEAAE-------------LFRTLHNTKFELDLTVFNCLVDGL 416
            +  EM+  GV  D  C     +             L + +H+ +   D  ++  ++DG 
Sbjct: 632 GVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGY 691

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            K+  ++ A+ ++  +   G  PN+VTYT +I  LC  G ++KA  L  +M
Sbjct: 692 SKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEM 742



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/441 (25%), Positives = 195/441 (44%), Gaps = 56/441 (12%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L++A   ++ M      P   +F +L+ AL       +   L + +    ++P+ V+ N
Sbjct: 486 KLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYN 545

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +++   CK      AF  L ++++K   PD  T   LI  LC  G+  EA     KF+  
Sbjct: 546 VMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAK----KFIDD 601

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI-------- 238
             R +   N +CY++++ G CK+G +     +  +M  RG+  D   Y  LI        
Sbjct: 602 LHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQD 661

Query: 239 --RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI--------------CHPDVLSY 282
              V+    N  D +        ++   ++G  + G +              C P++++Y
Sbjct: 662 TSAVFGLLKNMHDQRLRPDKV--IYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTY 719

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
            ++IN LCK  L+DKA+ L+ +M      P+ V Y   +D     G ++ A +L   +  
Sbjct: 720 TTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDM-L 778

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF 402
           +G + +T SYN L+  + K+ +VEEA  L  EMI   + PD  CI  +            
Sbjct: 779 KGLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPD--CITYST----------- 825

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
                ++ C     C+   L  A E +  +   G +P+ + Y  +I G CI G + KA++
Sbjct: 826 ----IIYQC-----CRRGNLDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFE 876

Query: 463 LLPDMEEKIRECLKAIELLHK 483
           L  DM   IR  +K  +  HK
Sbjct: 877 LRDDM---IRRGVKPNQATHK 894



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 113/458 (24%), Positives = 194/458 (42%), Gaps = 47/458 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+ A+ FF+ MI     P + S+ SL+     K        L   +   G+ P+  +   
Sbjct: 452 LSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTT 511

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++   +   ++DAF     +L +   P+ VT   +I G C +G   +A  L  + V   
Sbjct: 512 LISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMV--- 568

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            +  ++P+   Y  +I  LC  G V + +    D+       +   Y++L+  YC     
Sbjct: 569 -QKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYC----- 622

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
              +G    AL +  E V    ++ ++C      Y  +I+   K+        L  +M  
Sbjct: 623 --KEGRLRDALGVCREMVKRGVDMDLVC------YAVLIDGTIKEQDTSAVFGLLKNMHD 674

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           + + PD V+Y+S+IDGY   G +  A  ++  +  EGC P+  +Y TLIN   K   +++
Sbjct: 675 QRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDK 734

Query: 368 ALSLYGEMISMGVRPDNS---CILE------AAELFRTLHNTKFE---LDLTVFNCLVDG 415
           A  L+ EM+     P++    C L+      + E    LHN   +    +   +N LV G
Sbjct: 735 AELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLKGLLANTVSYNILVRG 794

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK----- 470
            CK  R+  A +L  ++      P+ +TY+ +I   C  G ++ A +    M  K     
Sbjct: 795 FCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPD 854

Query: 471 -------------IRECLKAIELLHKMAKRYVKPDEIT 495
                          E  KA EL   M +R VKP++ T
Sbjct: 855 TLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKPNQAT 892



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/421 (26%), Positives = 186/421 (44%), Gaps = 36/421 (8%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E  + D++  F  M   +  P + +   +L  LA  +     + L   + ++G+ PD   
Sbjct: 171 EKRMFDSVLIFRLMRQCELMPQVRTLGEVLNGLAKIRRVDMVLVLFGEILSMGIRPDIYI 230

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPD--VVTLGCLIRGLCMQGKFTEASGLFTK 182
              ++  FC++      F     +++++ S D  VV    LI GLC   +  EA  +   
Sbjct: 231 YVAVIRSFCEL----KNFAKAKEMIQRMESSDLNVVVYNVLIHGLCKNKRVWEAVEIKNG 286

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
            +    +  +  + + Y +++ GLCK         +  +M   G  P     +SL     
Sbjct: 287 LI----QKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMIELGFVPTEAALSSL----- 337

Query: 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
             V     KG    A +L    VN   ++G +  P +  Y ++INSLCKD   D+A+ LF
Sbjct: 338 --VEGLRRKGKVVDAFDL----VNRVKKVGAM--PSLFVYNALINSLCKDGKFDEAELLF 389

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
            +M  +G+  + V YS LID +C  G++D A      +   G       YN+LIN + K+
Sbjct: 390 KEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKL 449

Query: 363 EKVEEALSLYGEMISMGVRP-------------DNSCILEAAELFRTLHNTKFELDLTVF 409
             +  A+S + EMI  G++P             +   + EA  L+  +       +   F
Sbjct: 450 GNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTF 509

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
             L+  L ++ R+  A+ LF ++      PN VTY VMI G C EG   KA++LL  M +
Sbjct: 510 TTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQ 569

Query: 470 K 470
           K
Sbjct: 570 K 570



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 114/467 (24%), Positives = 200/467 (42%), Gaps = 80/467 (17%)

Query: 90  FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKM------IGVSDAFV 143
           +N L+  L   K     + +   L   GL    V+   L+   CK+       GV D  +
Sbjct: 264 YNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMI 323

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
            LG      F P    L  L+ GL  +GK  +A  L  +      +   +P++  Y ++I
Sbjct: 324 ELG------FVPTEAALSSLVEGLRRKGKVVDAFDLVNRVK----KVGAMPSLFVYNALI 373

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
           + LCKDG  ++  +LF +M  +G+  +   Y+ LI  +C        +G    A+    +
Sbjct: 374 NSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFC-------RRGKLDTAIHFLGK 426

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
            +     + +  +P    Y S+IN  CK   +  A   F +M  +G+ P VV Y+SLI G
Sbjct: 427 MIMAG--IKITVYP----YNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISG 480

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           YC  G++ +A +L+  +  +G  P+T ++ TLI++  +  ++ +A  L+ EM+   + P+
Sbjct: 481 YCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPN 540

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                                    +N +++G CK      A+EL  ++ + G  P+  T
Sbjct: 541 E----------------------VTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYT 578

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIE-----LLH---------------- 482
           Y  +I  LC  G + +A   + D+    RE  K  E     LLH                
Sbjct: 579 YRPLISSLCSTGRVCEAKKFIDDLH---REHFKLNEMCYSALLHGYCKEGRLRDALGVCR 635

Query: 483 KMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKL 529
           +M KR V  D +  ++L +   K+++      LL     +N  + +L
Sbjct: 636 EMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLL-----KNMHDQRL 677



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 167/382 (43%), Gaps = 51/382 (13%)

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
           ++P V     +++GL K   V+ V VLF ++   GI PD ++Y ++IR +C   N+  AK
Sbjct: 189 LMPQVRTLGEVLNGLAKIRRVDMVLVLFGEILSMGIRPDIYIYVAVIRSFCELKNFAKAK 248

Query: 252 ------GNTSAALELHEEFVNG--------------NGELGVICHPDVLSYCSIINSLCK 291
                  ++   + ++   ++G              NG +        ++YC+++  LCK
Sbjct: 249 EMIQRMESSDLNVVVYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCK 308

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
               +    +  +M   G +P     SSL++G    G++ DA  L   ++  G +P    
Sbjct: 309 VQEFEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFV 368

Query: 352 YNTLINSYSKIEKVEEALSLYGEM---------ISMGVRPDNSC----ILEAAELFRTLH 398
           YN LINS  K  K +EA  L+ EM         ++  +  D+ C    +  A      + 
Sbjct: 369 YNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMI 428

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
               ++ +  +N L++G CK   L +A   F ++   G +P VV+YT +I G C +G + 
Sbjct: 429 MAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLH 488

Query: 459 KAYDLLPDMEEK------------------IRECLKAIELLHKMAKRYVKPDEITVSILE 500
           +A+ L  +M  K                        A  L  +M ++ + P+E+T +++ 
Sbjct: 489 EAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMI 548

Query: 501 ELLNKDENCHECMNLLPSFLSR 522
           E   K+ N  +   LL   + +
Sbjct: 549 EGHCKEGNTVKAFELLNQMVQK 570



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 114/244 (46%), Gaps = 18/244 (7%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           L PD V    +++ + K   V  AF     ++ +  +P++VT   LI  LC  G   +A 
Sbjct: 677 LRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAE 736

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            L+ + +      N  PN + Y   +D L ++G + K   L  DM  +G+  +   YN L
Sbjct: 737 LLWKEMLV----SNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDML-KGLLANTVSYNIL 791

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           +R +C         G    A +L +E ++          PD ++Y +II   C+   +D 
Sbjct: 792 VRGFC-------KLGRVEEATKLLDEMIDN------AIFPDCITYSTIIYQCCRRGNLDG 838

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A E +  M ++G+ PD + Y+ LI G C+ G +  A +L   +   G  P+ +++ +L +
Sbjct: 839 AIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKPNQATHKSLSH 898

Query: 358 SYSK 361
             S+
Sbjct: 899 GASR 902



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 104/222 (46%), Gaps = 33/222 (14%)

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID---------------- 322
            +S+C +I++L    L   A  L   +  RG +    V+ +L+D                
Sbjct: 105 TMSFCILIHALVNANLFWPASSLLQTLLLRGGLDPREVFEALLDCFEKCDFISSLGFDLL 164

Query: 323 --GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
              Y    R+ D+  +F  +     +P   +   ++N  +KI +V+  L L+GE++SMG+
Sbjct: 165 IQSYVQEKRMFDSVLIFRLMRQCELMPQVRTLGEVLNGLAKIRRVDMVLVLFGEILSMGI 224

Query: 381 RPD---------NSCIL----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           RPD         + C L    +A E+ + + ++  +L++ V+N L+ GLCK+ R+  A E
Sbjct: 225 RPDIYIYVAVIRSFCELKNFAKAKEMIQRMESS--DLNVVVYNVLIHGLCKNKRVWEAVE 282

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           +   L + G   + VTY  ++ GLC     E    ++ +M E
Sbjct: 283 IKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMIE 324


>gi|116309556|emb|CAH66618.1| OSIGBa0144C23.4 [Oryza sativa Indica Group]
          Length = 845

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 123/484 (25%), Positives = 208/484 (42%), Gaps = 50/484 (10%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLN---TIGLLPDFVSL 125
           N+A C F+ M+   P P + S+++    +      V ++      N   T G+ P+    
Sbjct: 367 NEAKCIFDSMVLKGPKPDIISYSTNASWVCYWYVTVVWVMWHNIFNLMLTKGIAPNKHVF 426

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           NIL+N + +   +  A +    +  K   PD VT   +I  LC  G+  +A   F   V 
Sbjct: 427 NILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVD 486

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
                 V P+   Y  +I G C  G + K + L  +M  + I P    Y S I    C  
Sbjct: 487 I----GVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCK- 541

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
                +G  +   ++ +  V   G+      P+V+++ S++   C    +++A  L   M
Sbjct: 542 -----EGRVAEGKDIMDMMVQ-TGQ-----RPNVVTFNSLMEGYCLVGNMEEAFALLDAM 590

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
            S GI P+  +Y +L+DGYC  GRIDDA  +F  +  +G  P +  Y+ +++   +  + 
Sbjct: 591 ASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRT 650

Query: 366 EEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCL 412
             A  ++ EMI  G                 N+C  EA  L   L     + D+  FN +
Sbjct: 651 TAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIV 710

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-- 470
           +  + K  R + A ELF  +  YG  PN+ TY++MI  L  E   E+A +L   +E+   
Sbjct: 711 ISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGH 770

Query: 471 ----------IR------ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMN 514
                     +R      E  KA   L  + +  +  +  T+S+L  L +++    E + 
Sbjct: 771 ASDSRLLNHIVRMLLNKAEVAKASNYLSIIGENNLTLEASTISLLASLFSREGKYREHIK 830

Query: 515 LLPS 518
           LLP+
Sbjct: 831 LLPA 834



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/395 (26%), Positives = 185/395 (46%), Gaps = 44/395 (11%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           RL   GL PD  S +++   F K   V  A      ++ +   P ++    +I+ LC   
Sbjct: 201 RLLKNGLGPDDFSYSLIYG-FVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMK 259

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
           +  +A  +  K V       + P++  Y+ IIDGLCK   ++K   +   M   G  P++
Sbjct: 260 EMDKAESIVQKMV----DSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNS 315

Query: 232 FVYNSLIRVYCCAVNWEDA----KGNTSAALE---------LHEEFVNG-NGELGVIC-- 275
             YNSLI  Y  +  W ++    K  +S  +          +H  F +G   E   I   
Sbjct: 316 ITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDS 375

Query: 276 ------HPDVLSYCSIINSLCK---DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
                  PD++SY +  + +C     V+      +F  M ++GI P+  V++ LI+ Y  
Sbjct: 376 MVLKGPKPDIISYSTNASWVCYWYVTVVWVMWHNIFNLMLTKGIAPNKHVFNILINAYAR 435

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS- 385
            G +D A  +F  ++++G IPDT ++ T+I+S  +I ++++AL  +  M+ +GV P  + 
Sbjct: 436 CGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAV 495

Query: 386 --CILE----------AAELFRTLHNTKF-ELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
             C+++          A EL   + N       +  F+ +++ LCK  R+    ++   +
Sbjct: 496 YGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMM 555

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            + G  PNVVT+  ++ G C+ G +E+A+ LL  M
Sbjct: 556 VQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAM 590



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 108/426 (25%), Positives = 186/426 (43%), Gaps = 36/426 (8%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K GEV+   A C F  M+     P +   NS++  L   K       + +++   G+ PD
Sbjct: 222 KDGEVD--KAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPD 279

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             + +++++  CK   +  A   L +++     P+ +T   LI G  + G + E+  +F 
Sbjct: 280 LFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFK 339

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN---SLI 238
           +  +  C   VIP V    S I  L K G  N+ + +F  M  +G  PD   Y+   S +
Sbjct: 340 QMSS--C--GVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTNASWV 395

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
             +   V W          +  H  F   N  L     P+   +  +IN+  +  ++DKA
Sbjct: 396 CYWYVTVVW----------VMWHNIF---NLMLTKGIAPNKHVFNILINAYARCGMMDKA 442

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
             +F DM+++G+IPD V ++++I   C +GR+DDA   F  +   G  P  + Y  LI  
Sbjct: 443 MLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQG 502

Query: 359 YSKIEKVEEALSLYGEMISMGVRP----------DNSC----ILEAAELFRTLHNTKFEL 404
                ++ +A  L  EM++  + P          +N C    + E  ++   +  T    
Sbjct: 503 CCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRP 562

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           ++  FN L++G C    +  A+ L   +   G EPN   Y  ++ G C  G I+ A  + 
Sbjct: 563 NVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVF 622

Query: 465 PDMEEK 470
            DM  K
Sbjct: 623 RDMLHK 628



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 106/407 (26%), Positives = 173/407 (42%), Gaps = 89/407 (21%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P   + NIL++C+                 R+V  PD+        GL + G+  + +GL
Sbjct: 174 PTIHTYNILIDCY-----------------RRVHRPDL--------GLAIVGRLLK-NGL 207

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
                         P+   Y S+I G  KDG V+K   LFL+M  +G+ P   + NS+I+
Sbjct: 208 G-------------PDDFSY-SLIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIK 253

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C     + A           E  V    + G+   PD+ +Y  II+ LCK   +DKA+
Sbjct: 254 ELCKMKEMDKA-----------ESIVQKMVDSGIA--PDLFTYSLIIDGLCKSKAMDKAE 300

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            +   M   G  P+ + Y+SLI GY + G  +++ ++F  + S G IP   + N+ I++ 
Sbjct: 301 RVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHAL 360

Query: 360 SKIEKVEEALSLYGEMISMGVRPD------NS---CILEAAELFRTLHNTKFELDLT--- 407
            K  +  EA  ++  M+  G +PD      N+   C      ++   HN  F L LT   
Sbjct: 361 FKHGRTNEAKCIFDSMVLKGPKPDIISYSTNASWVCYWYVTVVWVMWHNI-FNLMLTKGI 419

Query: 408 -----VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
                VFN L++   +   +  A  +F+ +   G  P+ VT+  +I  LC  G ++ A  
Sbjct: 420 APNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALH 479

Query: 463 LLPDM-------EEKIRECL-----------KAIELLHKMAKRYVKP 491
               M        E +  CL           KA EL+ +M  + + P
Sbjct: 480 KFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPP 526


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 134/507 (26%), Positives = 224/507 (44%), Gaps = 44/507 (8%)

Query: 15  VKPSSSLRNSKKPISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCF 74
           ++  SS  +    I L  E + S    N+V      T L+K L +  +  E     AL  
Sbjct: 64  IRGFSSAGDLDIAIQLLEEMKSSGFEGNAVV----HTTLMKGLCDAGRVVE-----ALEH 114

Query: 75  FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           F  M      P + ++ +L+ AL     +     +   +   G  PD V+ + L++  CK
Sbjct: 115 FRAMAK-DCAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCK 173

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
                 AF  L  ++++           +I+ LC +    E   L +K +         P
Sbjct: 174 FGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVE---LASKVLGVVIAKGFTP 230

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
            V+ +  +I+G CK   ++    L   M  +G  P+ F +  LI   C A    +A+   
Sbjct: 231 TVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQ--- 287

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
               +L E+ V G       C P+V++Y ++IN LCK   VD A ELF  M+ R   P+V
Sbjct: 288 ----QLLEKMVMGG------CSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNV 337

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           V ++ LIDG C   RI++AR+L+  +   GC PD  +YN+LI+   K  +V+EA  L+  
Sbjct: 338 VTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQT 397

Query: 375 MISMGVRPDNSC--------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           +   GV   N+               + +A  +F  L +  F  DL  +  L+   CK+ 
Sbjct: 398 IPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTS 457

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK--IRECLKAI 478
           R     EL +++   G  P V T + ++ GL      E+A  L   M  +    + L   
Sbjct: 458 RAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYN 517

Query: 479 ELLHKMAKRYVKPDEITVSILEELLNK 505
            ++  MA R  K D+  +++LE++++K
Sbjct: 518 LVVEGMA-RASKHDK-ALAVLEQVIDK 542



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 176/401 (43%), Gaps = 50/401 (12%)

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD 209
           R     +V +  C +  LC   +  EA  LF   +A  C    +PN   Y  +I G    
Sbjct: 15  RSRVGHNVFSCNCALDMLCRLNRRQEALALFRNAMARIC----MPNKFTYGILIRGFSSA 70

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269
           G ++    L  +MK  G   +A V+ +L++  C A       G    ALE          
Sbjct: 71  GDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDA-------GRVVEALEHFRAMAKD-- 121

Query: 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329
                C PDV++Y +++++LCK    D+A+ +  +M ++G  PD V +S+LIDG C  G 
Sbjct: 122 -----CAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGS 176

Query: 330 IDDARKLFVSIESEGCIPDTSSYNTLINSY-SKIEKVEEALSLYGEMISMGVRP------ 382
            + A ++   +   G     +++ T+I    +K   VE A  + G +I+ G  P      
Sbjct: 177 EEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFN 236

Query: 383 ---DNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
              +  C    +  A +L   +       ++  F  L+ GLCK+ R+  A +L +K+   
Sbjct: 237 LVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMG 296

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKA 477
           G  PNVVTY+ +I GLC +G ++ AY+L   ME                   K +   +A
Sbjct: 297 GCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEA 356

Query: 478 IELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPS 518
            +L H+M +    PD IT + L + L K     E   L  +
Sbjct: 357 RQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQT 397



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 114/470 (24%), Positives = 185/470 (39%), Gaps = 99/470 (21%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L+ A      MI     P + +F  L+  L           L E++   G  P+ V+ +
Sbjct: 247 DLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYS 306

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            ++N  CK   V DA+     + R+   P+VVT   LI GLC   +  EA  L+ +    
Sbjct: 307 TVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRET 366

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK----------------------G 224
            C P++I     Y S+IDGLCK   V++   LF  +                       G
Sbjct: 367 GCAPDIIT----YNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALG 422

Query: 225 R--------------GIYPDAFVYNSLIRVYCCA---------------------VNWED 249
           R              G  PD   Y SLI  YC                       VN   
Sbjct: 423 RMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLS 482

Query: 250 A------KGN-TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK--- 299
           A      +GN T  A++L +            C  D L Y  ++  + +    DKA    
Sbjct: 483 AVLGGLFEGNHTERAIQLFDSMAARG------CTDDALIYNLVVEGMARASKHDKALAVL 536

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           E  +D + R   P      +L++  C +G+ DDA++L   +   G     SSYN L++  
Sbjct: 537 EQVIDKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGL 596

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
           S++++ +EA  ++  M+S G  P                      +++  N ++  LC +
Sbjct: 597 SRLQRWDEATQVFEAMVSAGPAP----------------------EISTVNVVISWLCSA 634

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
            ++  A+EL +++ + G  P++ T   +I G C  G  + A  LL +M E
Sbjct: 635 AKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTE 684



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 146/381 (38%), Gaps = 59/381 (15%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G+V+  DA   F  M      P + + N L+  L   K       L  R+   G  PD
Sbjct: 314 KQGQVD--DAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPD 371

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRK-VFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
            ++ N L++  CK   V +AF     I    V + + VT   L  G    G+  +A  +F
Sbjct: 372 IITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIF 431

Query: 181 TKFVAFDCRPNVI-------------------------------PNVICYASIIDGLCKD 209
           +  V     P++                                P V   ++++ GL + 
Sbjct: 432 SMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEG 491

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA-------------VNWEDAKGN--T 254
               +   LF  M  RG   DA +YN ++     A             ++  D K N  +
Sbjct: 492 NHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPSS 551

Query: 255 SAALELHEEF--VNGNGELGVICH--------PDVLSYCSIINSLCKDVLVDKAKELFLD 304
           SA   L E    V    +   + H          V SY  +++ L +    D+A ++F  
Sbjct: 552 SAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEA 611

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M S G  P++   + +I   C   ++DDA +L   +   GC PD  + NTLI  Y K  +
Sbjct: 612 MVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGR 671

Query: 365 VEEALSLYGEMISMGVRPDNS 385
            + A  L  EM   G+ P+++
Sbjct: 672 ADLARKLLEEMTEAGLEPNDT 692


>gi|255547043|ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546183|gb|EEF47685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 840

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/458 (24%), Positives = 206/458 (44%), Gaps = 59/458 (12%)

Query: 57  LSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           +S   K G V++  A  FF  M+     P   S+N L+  L         + L   +   
Sbjct: 288 MSRYCKLGFVDV--AKSFFCMMLKHGLLPDAYSYNILIHGLCIAGSMGEALDLKNDMENH 345

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL PD V+ NIL   F  +  ++ A+  + ++L K  +P++VT   LI G C  G   EA
Sbjct: 346 GLEPDMVTYNILAKGFRLLGLINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEA 405

Query: 177 SGLFTKFVAFDCRPNVI-------------------------------PNVICYASIIDG 205
             L+ + ++   + ++I                               P++I Y+++I G
Sbjct: 406 LKLYKEMISHGFQLSIISSTVLLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHG 465

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
           LCK G V +  +L+  M    I P++ ++ +++   C        KG  S A    +  +
Sbjct: 466 LCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLC-------EKGKISQARMYFDYLI 518

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
             N  L      D++ Y  +I+   K     +A +L+  +  +GI P +V ++SL+ G+C
Sbjct: 519 TSNLSL------DIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFC 572

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
           +  ++  AR+L  +I+  G  P+  +Y TL+N Y +   ++  L L  EM +  + P + 
Sbjct: 573 INRKLSQARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHI 632

Query: 386 C-------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
                         + E+ +L   +       D   +N ++   CK+  +R A++L+ K+
Sbjct: 633 TYTVVIKGLCKQWKLQESCQLLEDMDAVGLTPDQVSYNTIIQAFCKARDMRKAFQLYDKM 692

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
             +  EP  VTY ++I G C+ G ++ A +LL  ++ +
Sbjct: 693 LLHNLEPTSVTYNILINGFCVYGDLKDADNLLVSLQNR 730



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 112/446 (25%), Positives = 196/446 (43%), Gaps = 56/446 (12%)

Query: 120 PDFVSLNILMNCFCKM--IGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           P  VS N +M+ +CK+  + V+ +F  +  +L+    PD  +   LI GLC+ G   EA 
Sbjct: 279 PSVVSFNTIMSRYCKLGFVDVAKSFFCM--MLKHGLLPDAYSYNILIHGLCIAGSMGEAL 336

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            L          P+++     Y  +  G    G +N    +   M  +G  P+   Y  L
Sbjct: 337 DLKNDMENHGLEPDMVT----YNILAKGFRLLGLINGAWNIIQKMLIKGPNPNLVTYTVL 392

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           I  +C         GN   AL+L++E ++   +L +I      S   ++ SLCK   VD 
Sbjct: 393 ICGHC-------QIGNVEEALKLYKEMISHGFQLSII------SSTVLLGSLCKSRQVDV 439

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A +LF +M++ G+ PD++ YS+LI G C  G +  A  L+  + S   IP++  +  ++ 
Sbjct: 440 AFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILM 499

Query: 358 SYSKIEKVEEA---------------LSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF 402
              +  K+ +A               + LY  MI   ++  N+   EA +L++ L     
Sbjct: 500 GLCEKGKISQARMYFDYLITSNLSLDIILYNIMIDGYIKRGNT--REAVKLYKQLGEKGI 557

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
              +  FN L+ G C + +L  A  L   +  +G EPN VTYT ++   C EG ++   +
Sbjct: 558 SPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLLE 617

Query: 463 LLPDMEEKI------------------RECLKAIELLHKMAKRYVKPDEITVSILEELLN 504
           LL +M+ K                    +  ++ +LL  M    + PD+++ + + +   
Sbjct: 618 LLSEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQLLEDMDAVGLTPDQVSYNTIIQAFC 677

Query: 505 KDENCHECMNLLPSFLSRNQEESKLT 530
           K  +  +   L    L  N E + +T
Sbjct: 678 KARDMRKAFQLYDKMLLHNLEPTSVT 703



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 109/420 (25%), Positives = 185/420 (44%), Gaps = 75/420 (17%)

Query: 159 TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVL 218
           T   ++ GLC Q +F +A   F      + +P+V+     + +I+   CK GFV+  +  
Sbjct: 248 TSSIVVDGLCRQSRFQDAVLFFQDTEGKEFQPSVVS----FNTIMSRYCKLGFVDVAKSF 303

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG----------- 267
           F  M   G+ PDA+ YN LI   C A       G+   AL+L  +  N            
Sbjct: 304 FCMMLKHGLLPDAYSYNILIHGLCIA-------GSMGEALDLKNDMENHGLEPDMVTYNI 356

Query: 268 -----------NGELGVIC-------HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
                      NG   +I        +P++++Y  +I   C+   V++A +L+ +M S G
Sbjct: 357 LAKGFRLLGLINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKEMISHG 416

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
               ++  + L+   C   ++D A KLF  +E+ G  PD  +Y+TLI+   K  +V++A+
Sbjct: 417 FQLSIISSTVLLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAI 476

Query: 370 SLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
            LY +M S  + P++               I +A   F  L  +   LD+ ++N ++DG 
Sbjct: 477 LLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNLSLDIILYNIMIDGY 536

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM--------- 467
            K    R A +L+K+L   G  P +VT+  ++ G CI   + +A  LL  +         
Sbjct: 537 IKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLEPNA 596

Query: 468 -----------EEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                      EE   + L  +ELL +M  + + P  IT +++ + L K     E   LL
Sbjct: 597 VTYTTLMNVYCEEGNMQSL--LELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQLL 654



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/432 (23%), Positives = 181/432 (41%), Gaps = 62/432 (14%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +N A      M+   P P + ++  L+            + L + + + G     +S  +
Sbjct: 367 INGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKEMISHGFQLSIISSTV 426

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+   CK   V  AF     +      PD++T   LI GLC QG+  +A  L+ K     
Sbjct: 427 LLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAILLYEKM---- 482

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C   +IPN + + +I+ GLC+ G +++ R+ F  +    +  D  +YN +I  Y      
Sbjct: 483 CSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNLSLDIILYNIMIDGYI----- 537

Query: 248 EDAKGNTSAALELHEEF---------VNGNGELGVIC--------------------HPD 278
              +GNT  A++L+++          V  N  +   C                     P+
Sbjct: 538 --KRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLEPN 595

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
            ++Y +++N  C++  +    EL  +MK++ I P  + Y+ +I G C   ++ ++ +L  
Sbjct: 596 AVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQLLE 655

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398
            +++ G  PD  SYNT+I ++ K   + +A  LY +M+                    LH
Sbjct: 656 DMDAVGLTPDQVSYNTIIQAFCKARDMRKAFQLYDKML--------------------LH 695

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
           N   E     +N L++G C    L+ A  L   L       N   YT +I   C +G ++
Sbjct: 696 N--LEPTSVTYNILINGFCVYGDLKDADNLLVSLQNRKVNLNKYAYTTIIKAHCAKGDVD 753

Query: 459 KAYDLLPDMEEK 470
           KA      M EK
Sbjct: 754 KAVVYFRQMVEK 765



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 104/465 (22%), Positives = 190/465 (40%), Gaps = 93/465 (20%)

Query: 64  GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGAL-AGKKYYVNFICLSERLNTIGLLPDF 122
           G VE  +AL  +  MI       + S   LLG+L   ++  V F    E +   GL PD 
Sbjct: 400 GNVE--EALKLYKEMISHGFQLSIISSTVLLGSLCKSRQVDVAFKLFCE-MEANGLRPDL 456

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           ++ + L++  CK   V  A +   ++      P+ +  G ++ GLC +GK ++A   F  
Sbjct: 457 ITYSTLIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDY 516

Query: 183 FVAFDCRPNVI-------------------------------PNVICYASIIDGLCKDGF 211
            +  +   ++I                               P ++ + S++ G C +  
Sbjct: 517 LITSNLSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCINRK 576

Query: 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF------- 264
           +++ R L   +K  G+ P+A  Y +L+ VYC        +GN  + LEL  E        
Sbjct: 577 LSQARRLLDTIKLHGLEPNAVTYTTLMNVYC-------EEGNMQSLLELLSEMKAKAIGP 629

Query: 265 --------VNG---NGELGVICH-----------PDVLSYCSIINSLCKDVLVDKAKELF 302
                   + G     +L   C            PD +SY +II + CK   + KA +L+
Sbjct: 630 THITYTVVIKGLCKQWKLQESCQLLEDMDAVGLTPDQVSYNTIIQAFCKARDMRKAFQLY 689

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
             M    + P  V Y+ LI+G+C+ G + DA  L VS+++     +  +Y T+I ++   
Sbjct: 690 DKMLLHNLEPTSVTYNILINGFCVYGDLKDADNLLVSLQNRKVNLNKYAYTTIIKAHCAK 749

Query: 363 EKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRL 422
             V++A+  + +M+  G                      FE+ +  ++ ++  LCK   +
Sbjct: 750 GDVDKAVVYFRQMVEKG----------------------FEVSIRDYSAVIGRLCKRCLV 787

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
             A   F  +   G  P+   + V++      G +   ++LL +M
Sbjct: 788 TEAKYFFCMMLSDGVCPDQDLFEVLLNAFHQCGHLNSEFELLAEM 832



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 123/296 (41%), Gaps = 17/296 (5%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           +P + +FNSL+      +       L + +   GL P+ V+   LMN +C+   +     
Sbjct: 558 SPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLLE 617

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
            L  +  K   P  +T   +I+GLC Q K  E+  L     A      + P+ + Y +II
Sbjct: 618 LLSEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQLLEDMDAV----GLTPDQVSYNTII 673

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
              CK   + K   L+  M    + P +  YN LI  +C    + D K   +  + L   
Sbjct: 674 QAFCKARDMRKAFQLYDKMLLHNLEPTSVTYNILINGFCV---YGDLKDADNLLVSLQNR 730

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
            VN N            +Y +II + C    VDKA   F  M  +G    +  YS++I  
Sbjct: 731 KVNLNK----------YAYTTIIKAHCAKGDVDKAVVYFRQMVEKGFEVSIRDYSAVIGR 780

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
            C    + +A+  F  + S+G  PD   +  L+N++ +   +     L  EMI  G
Sbjct: 781 LCKRCLVTEAKYFFCMMLSDGVCPDQDLFEVLLNAFHQCGHLNSEFELLAEMIKSG 836



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 102/231 (44%), Gaps = 31/231 (13%)

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           +++ ++K  G        S ++DG C   R  DA   F   E +   P   S+NT+++ Y
Sbjct: 232 DVYNEIKVSGTPQSEYTSSIVVDGLCRQSRFQDAVLFFQDTEGKEFQPSVVSFNTIMSRY 291

Query: 360 SKIEKVEEALSLYGEMISMGVRPD---------NSCIL----EAAELFRTLHNTKFELDL 406
            K+  V+ A S +  M+  G+ PD           CI     EA +L   + N   E D+
Sbjct: 292 CKLGFVDVAKSFFCMMLKHGLLPDAYSYNILIHGLCIAGSMGEALDLKNDMENHGLEPDM 351

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             +N L  G      +  AW + +K+   GP PN+VTYTV+ICG C  G +E+A  L  +
Sbjct: 352 VTYNILAKGFRLLGLINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKE 411

Query: 467 MEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           M                    K R+   A +L  +M    ++PD IT S L
Sbjct: 412 MISHGFQLSIISSTVLLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTL 462



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 10/164 (6%)

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI----------NSYSKIEK 364
           VV+  L   Y     + DA  + V ++    I    +YN+L+          + Y++I+ 
Sbjct: 180 VVWDMLACAYSRSAMVHDALFVLVKMKDLNFIVSIQTYNSLLYNLRHSNIMWDVYNEIKV 239

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
                S Y   I +      S   +A   F+     +F+  +  FN ++   CK   +  
Sbjct: 240 SGTPQSEYTSSIVVDGLCRQSRFQDAVLFFQDTEGKEFQPSVVSFNTIMSRYCKLGFVDV 299

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           A   F  + ++G  P+  +Y ++I GLCI G + +A DL  DME
Sbjct: 300 AKSFFCMMLKHGLLPDAYSYNILIHGLCIAGSMGEALDLKNDME 343


>gi|242058007|ref|XP_002458149.1| hypothetical protein SORBIDRAFT_03g027690 [Sorghum bicolor]
 gi|241930124|gb|EES03269.1| hypothetical protein SORBIDRAFT_03g027690 [Sorghum bicolor]
          Length = 795

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 123/486 (25%), Positives = 207/486 (42%), Gaps = 58/486 (11%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E+  AL  F+  +    TP   ++  L+     +        L  ++   GLLP     N
Sbjct: 309 EIGKALDLFDEAVRDGVTPTNVTYTVLIKGCDAEGMTDETYKLCRQMIEQGLLPSTYEFN 368

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +++    +     DA +AL  ++     PDV T GCLI  L    K  EA  L+ K    
Sbjct: 369 LVIKGLLRNKQWEDA-IALFDLVVDTGVPDVFTYGCLIHWLSKHHKVHEAVNLWDKMKEA 427

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             +P++   V C+ S++ G C+ G +++   L+ +M G+G  P+   Y +L++ Y     
Sbjct: 428 GVKPSI---VTCH-SLLLGYCEKGCMDEALKLYSEMPGKGFPPNEVTYTTLMKGYIKKKA 483

Query: 247 WEDA--------KGNTSAALELHEEFVNGNGELGVICH--------------PDVLSYCS 284
           ++ A        +   S     +   +NG   +  +C               P  ++Y S
Sbjct: 484 FDKAYALLNEMHQNGVSCGEYTYNILINGLCMVDRVCEVDEMLKRFVSEGFVPTTMTYNS 543

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           IIN   K  ++  A  ++  M  +GI P++V Y+S IDGYC     D A KL + +   G
Sbjct: 544 IINGFVKAGMMGSALAMYRQMCEKGITPNIVTYTSFIDGYCRTNCCDLAVKLLIYMRCNG 603

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCIL---------EAA 391
             PD ++YN  IN + K   +  AL     ++  G+ P+    NS +          EA+
Sbjct: 604 IHPDIAAYNAFINMFCKQGNMSHALHFLVLLLKDGLTPNVTVYNSFVTGYKNLKMMAEAS 663

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
           + + ++   +   D  ++  L+DG  K   +  A EL+ ++      P+  T+T +  GL
Sbjct: 664 KFYYSMIKQRIAADTEIYTTLIDGFSKVGNVAFALELYSEMLANHNIPDDKTFTALTHGL 723

Query: 452 CIEGGIEKAYDLLPDMEE----------------KIRE--CLKAIELLHKMAKRYVKPDE 493
           C  G I+ A  LL DM                   IR+    +A +L  KM    V PD+
Sbjct: 724 CRSGDIDGAKRLLDDMTRLDVCPNTVTYNMLINAHIRDGKLQEAFQLHDKMLSSGVVPDD 783

Query: 494 ITVSIL 499
            T +I 
Sbjct: 784 TTYNIF 789



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 110/460 (23%), Positives = 186/460 (40%), Gaps = 76/460 (16%)

Query: 44  VSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYY 103
           V   + +T LL   +  + +      DAL  F+ M           ++ ++ A    + +
Sbjct: 150 VPDAKSRTDLLVATARGASAA-----DALTLFDEMRCKGYYADAKMYDVVMRACVVGRMH 204

Query: 104 VNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSP-------- 155
            + + L + +   G+ PD     I +   CK+     A   LG++      P        
Sbjct: 205 GDAVRLFDEMAGAGVKPDERVYAITITGLCKLRDADRAVQVLGKMREAGLKPRDFTYNSV 264

Query: 156 ----------------------------DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
                                       DV     L++G C+ G+  +A  LF + V   
Sbjct: 265 VDVLVKVGRMDEALRLKDQMLLATGKKMDVFLATTLMQGYCLHGEIGKALDLFDEAV--- 321

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            R  V P  + Y  +I G   +G  ++   L   M  +G+ P  + +N +I+       W
Sbjct: 322 -RDGVTPTNVTYTVLIKGCDAEGMTDETYKLCRQMIEQGLLPSTYEFNLVIKGLLRNKQW 380

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           ED       A+ L +  V    + GV   PDV +Y  +I+ L K   V +A  L+  MK 
Sbjct: 381 ED-------AIALFDLVV----DTGV---PDVFTYGCLIHWLSKHHKVHEAVNLWDKMKE 426

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            G+ P +V   SL+ GYC  G +D+A KL+  +  +G  P+  +Y TL+  Y K +  ++
Sbjct: 427 AGVKPSIVTCHSLLLGYCEKGCMDEALKLYSEMPGKGFPPNEVTYTTLMKGYIKKKAFDK 486

Query: 368 ALSLYGEMISMGVR---------------PDNSCILEAAELFRTLHNTKFELDLTVFNCL 412
           A +L  EM   GV                 D  C  E  E+ +   +  F      +N +
Sbjct: 487 AYALLNEMHQNGVSCGEYTYNILINGLCMVDRVC--EVDEMLKRFVSEGFVPTTMTYNSI 544

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
           ++G  K+  + SA  +++++   G  PN+VTYT  I G C
Sbjct: 545 INGFVKAGMMGSALAMYRQMCEKGITPNIVTYTSFIDGYC 584



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 160/376 (42%), Gaps = 30/376 (7%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           R+ T G++PD  S   L+    +    +DA      +  K +  D      ++R   +  
Sbjct: 143 RMVTRGVVPDAKSRTDLLVATARGASAADALTLFDEMRCKGYYADAKMYDVVMRACVVGR 202

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
              +A  LF +         V P+   YA  I GLCK    ++   +   M+  G+ P  
Sbjct: 203 MHGDAVRLFDEMAG----AGVKPDERVYAITITGLCKLRDADRAVQVLGKMREAGLKPRD 258

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
           F YNS++ V           G    AL L ++ +   G+       DV    +++   C 
Sbjct: 259 FTYNSVVDVLV-------KVGRMDEALRLKDQMLLATGK-----KMDVFLATTLMQGYCL 306

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
              + KA +LF +    G+ P  V Y+ LI G    G  D+  KL   +  +G +P T  
Sbjct: 307 HGEIGKALDLFDEAVRDGVTPTNVTYTVLIKGCDAEGMTDETYKLCRQMIEQGLLPSTYE 366

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCIL----------EAAELFRTLH 398
           +N +I    + ++ E+A++L+  ++  GV PD     C++          EA  L+  + 
Sbjct: 367 FNLVIKGLLRNKQWEDAIALFDLVVDTGV-PDVFTYGCLIHWLSKHHKVHEAVNLWDKMK 425

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
               +  +   + L+ G C+   +  A +L+ ++P  G  PN VTYT ++ G   +   +
Sbjct: 426 EAGVKPSIVTCHSLLLGYCEKGCMDEALKLYSEMPGKGFPPNEVTYTTLMKGYIKKKAFD 485

Query: 459 KAYDLLPDMEEKIREC 474
           KAY LL +M +    C
Sbjct: 486 KAYALLNEMHQNGVSC 501



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 128/313 (40%), Gaps = 55/313 (17%)

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSA-ALELHEEFVNGNGELGVICHPDVL 280
           M  RG+ PDA     L+           A+G ++A AL L +E +   G        DV+
Sbjct: 144 MVTRGVVPDAKSRTDLL--------VATARGASAADALTLFDE-MRCKGYYADAKMYDVV 194

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
               ++  +  D     A  LF +M   G+ PD  VY+  I G C +   D A ++   +
Sbjct: 195 MRACVVGRMHGD-----AVRLFDEMAGAGVKPDERVYAITITGLCKLRDADRAVQVLGKM 249

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNT 400
              G  P   +YN++++   K+ +++EAL L  +M                     L  T
Sbjct: 250 REAGLKPRDFTYNSVVDVLVKVGRMDEALRLKDQM---------------------LLAT 288

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
             ++D+ +   L+ G C    +  A +LF +  R G  P  VTYTV+I G   EG  ++ 
Sbjct: 289 GKKMDVFLATTLMQGYCLHGEIGKALDLFDEAVRDGVTPTNVTYTVLIKGCDAEGMTDET 348

Query: 461 YDLLPDMEEK------------IRECLK------AIELLHKMAKRYVKPDEITVSILEEL 502
           Y L   M E+            I+  L+      AI L   +    V PD  T   L   
Sbjct: 349 YKLCRQMIEQGLLPSTYEFNLVIKGLLRNKQWEDAIALFDLVVDTGV-PDVFTYGCLIHW 407

Query: 503 LNKDENCHECMNL 515
           L+K    HE +NL
Sbjct: 408 LSKHHKVHEAVNL 420



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 75/179 (41%), Gaps = 39/179 (21%)

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK 401
           + G +PD  S   L+ + ++     +AL+L+ EM   G   D       A+++       
Sbjct: 146 TRGVVPDAKSRTDLLVATARGASAADALTLFDEMRCKGYYAD-------AKMY------- 191

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
              D+ +  C+V  +        A  LF ++   G +P+   Y + I GLC         
Sbjct: 192 ---DVVMRACVVGRMHGD-----AVRLFDEMAGAGVKPDERVYAITITGLC--------- 234

Query: 462 DLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
                   K+R+  +A+++L KM +  +KP + T + + ++L K     E + L    L
Sbjct: 235 --------KLRDADRAVQVLGKMREAGLKPRDFTYNSVVDVLVKVGRMDEALRLKDQML 285


>gi|297846140|ref|XP_002890951.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297336793|gb|EFH67210.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 689

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 115/441 (26%), Positives = 199/441 (45%), Gaps = 51/441 (11%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK--MIGVSD 140
           P P + +F +L+     +        L + +   G+ PD ++ + L++ + K  M+G+  
Sbjct: 174 PAPNVVTFCTLINGFCKRGEMDRAFELFKVMEQRGIAPDLIAYSTLIDGYFKAGMLGMGH 233

Query: 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200
              +  + L K    DVV     I      G  T A  ++ + +   C+  + PNV+ Y 
Sbjct: 234 KLFS--QALHKGVKLDVVVFSSTIDVYVKFGYLTTAFDVYKRML---CQ-GISPNVVTYT 287

Query: 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL 260
            +I GLC+DG + +   ++  +  RG+ P    Y+SLI  +C         GN  +   L
Sbjct: 288 ILIKGLCQDGRIYEAFGIYCQILKRGLEPSVVTYSSLIDGFC-------KYGNLRSGFAL 340

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
           +E+ +    ++G    PDV+ Y  +++ LCK  L+  A    +    + I P+VVV++SL
Sbjct: 341 YEDMI----KMGY--PPDVVIYGVLVDGLCKQGLMLHALRFSVKTLGQSIRPNVVVFNSL 394

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           IDG+C + R D+A K+F  +   G  PD ++  TL+       +++E L L+  M  MG+
Sbjct: 395 IDGWCRLNRCDEALKVFRLMGIYGIKPDVATITTLMRVTVMEGRLKEGLFLFFRMFKMGL 454

Query: 381 RPDNS--CILEAA-----------ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
            PD    C L  A           +LF  +   K   D+ V N +++ L K   +  A +
Sbjct: 455 EPDAVAFCTLMDAFCKNMKPTIGLQLFDLMQRNKIPADIAVCNVVINLLFKGQSVEEASK 514

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKR 487
            F  L     EP++VTY  MICG C                  +R   +A  +   +   
Sbjct: 515 FFNNLLEGKMEPDIVTYNTMICGYC-----------------SLRRLDEAARIFEMLKFT 557

Query: 488 YVKPDEITVSILEELLNKDEN 508
              P+ +T++IL   L K+ +
Sbjct: 558 PFGPNAVTLTILIHTLCKNSD 578



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 127/494 (25%), Positives = 210/494 (42%), Gaps = 77/494 (15%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLL-GALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
           E++ A   F  M      P + ++++L+ G        +     S+ L+  G+  D V  
Sbjct: 193 EMDRAFELFKVMEQRGIAPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHK-GVKLDVVVF 251

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           +  ++ + K   ++ AF    R+L +  SP+VVT   LI+GLC  G+  EA G++ + + 
Sbjct: 252 SSTIDVYVKFGYLTTAFDVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGIYCQIL- 310

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
              +  + P+V+ Y+S+IDG CK G +     L+ DM   G  PD  +Y  L+   C   
Sbjct: 311 ---KRGLEPSVVTYSSLIDGFCKYGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLC--- 364

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
                +G    AL    +       LG    P+V+ + S+I+  C+    D+A ++F  M
Sbjct: 365 ----KQGLMLHALRFSVK------TLGQSIRPNVVVFNSLIDGWCRLNRCDEALKVFRLM 414

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
              GI PDV   ++L+    + GR+ +   LF  +   G  PD  ++ TL++++ K  K 
Sbjct: 415 GIYGIKPDVATITTLMRVTVMEGRLKEGLFLFFRMFKMGLEPDAVAFCTLMDAFCKNMKP 474

Query: 366 EEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCL 412
              L L+  M    +  D                + EA++ F  L   K E D+  +N +
Sbjct: 475 TIGLQLFDLMQRNKIPADIAVCNVVINLLFKGQSVEEASKFFNNLLEGKMEPDIVTYNTM 534

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM------------------------- 447
           + G C   RL  A  +F+ L      PN VT T++                         
Sbjct: 535 ICGYCSLRRLDEAARIFEMLKFTPFGPNAVTLTILIHTLCKNSDMDGALRIISPSIISYS 594

Query: 448 --ICGLCIEGGIEKAYD---------LLPDMEEK---IRECLK------AIELLHKMAKR 487
             I GLC  G +++A +         +LPD+      IR C K      A  L   M + 
Sbjct: 595 IIIDGLCKRGRVDEATNIFHQAIDAKILPDVVAYAILIRGCCKVGRLVEAALLYEHMLRN 654

Query: 488 YVKPDEITVSILEE 501
            VKPD++    L E
Sbjct: 655 GVKPDDLLQRALSE 668



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 159/349 (45%), Gaps = 48/349 (13%)

Query: 185 AFD--CRPNVIP-NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           +FD  CR   +P  V  +  ++D L + G V K       +  RG   D    N ++   
Sbjct: 95  SFDKLCRGGTVPFGVSAHGFVLDALFRKGEVTKALDFHRLVMERGFRVDIVSCNKIL--- 151

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
                    KG +   +E+    ++   + G    P+V+++C++IN  CK   +D+A EL
Sbjct: 152 ---------KGLSVDQIEVASRMLSLVLDCGP--APNVVTFCTLINGFCKRGEMDRAFEL 200

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F  M+ RGI PD++ YS+LIDGY   G +    KLF     +G   D   +++ I+ Y K
Sbjct: 201 FKVMEQRGIAPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVK 260

Query: 362 IEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTV 408
              +  A  +Y  M+  G+ P+             +  I EA  ++  +     E  +  
Sbjct: 261 FGYLTTAFDVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGIYCQILKRGLEPSVVT 320

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA-------- 460
           ++ L+DG CK   LRS + L++ + + G  P+VV Y V++ GLC +G +  A        
Sbjct: 321 YSSLIDGFCKYGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLCKQGLMLHALRFSVKTL 380

Query: 461 ----------YDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                     ++ L D   ++  C +A+++   M    +KPD  T++ L
Sbjct: 381 GQSIRPNVVVFNSLIDGWCRLNRCDEALKVFRLMGIYGIKPDVATITTL 429


>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g19440, chloroplastic-like [Cucumis sativus]
          Length = 799

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 167/334 (50%), Gaps = 39/334 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL  D ++ N L+  FC    V   F     + ++   PD+ T   L+RGLC  GK  +A
Sbjct: 495 GLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDA 554

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L+ +F A      +I N+  Y  +++G CK   +  V  LF ++  + +  ++ VYN 
Sbjct: 555 IKLWDEFKA----SGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNI 610

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           +I+ +C         GN +AAL+L E   +     G++  P+  +Y S+I+ +C   LV+
Sbjct: 611 IIKAHC-------QNGNVAAALQLLENMKSK----GIL--PNCATYSSLIHGVCNIGLVE 657

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            AK L  +M+  G +P+VV Y++LI GYC +G++D A   ++ + S    P+  +Y  +I
Sbjct: 658 DAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMI 717

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           + Y K+  +E+A +L  +M   G+ P                      D+  +N L +G 
Sbjct: 718 DGYCKLGNMEKANNLLIKMKESGIVP----------------------DVVTYNVLTNGF 755

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
           CK+  + +A+++  ++   G   + +TYT ++ G
Sbjct: 756 CKANDMDNAFKVCDQMATEGLPVDEITYTTLVHG 789



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 103/403 (25%), Positives = 178/403 (44%), Gaps = 48/403 (11%)

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           +++  CK      AF     +L + F P  + L  L+ GLC  GK  EA+ L+ + +   
Sbjct: 401 VVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLL--- 457

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
                  + +   ++I GLC  G + +   +  +M  RG+  D   YN+LI  +C     
Sbjct: 458 -EKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFC----- 511

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
              +G       L EE      + G+   PD+ +Y  ++  LC    +D A +L+ + K+
Sbjct: 512 --NEGKVEGCFRLREEMT----KRGI--QPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKA 563

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            G+I ++  Y  +++GYC   RI+D   LF  + S+    ++  YN +I ++ +   V  
Sbjct: 564 SGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAA 623

Query: 368 ALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDLTVFNCLVD 414
           AL L   M S G+ P+ +              + +A  L   +    F  ++  +  L+ 
Sbjct: 624 ALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIG 683

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE----- 469
           G CK  ++ +A   + ++  +   PN  TYTVMI G C  G +EKA +LL  M+E     
Sbjct: 684 GYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVP 743

Query: 470 -------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                        K  +   A ++  +MA   +  DEIT + L
Sbjct: 744 DVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTL 786



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 110/424 (25%), Positives = 180/424 (42%), Gaps = 56/424 (13%)

Query: 108 CLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGL 167
           C   R+ + G  PD  S   ++N  CK   + +A     ++ +   SP+VVT  C+I GL
Sbjct: 206 CEVFRVMSEGACPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGL 265

Query: 168 CMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI 227
           C  G+   A  L  K         V PN+  Y ++I+GL K  F +KV  +  +M G G 
Sbjct: 266 CQNGRLDNAFELKEKMTV----KGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGF 321

Query: 228 YPDAFVYNSLIRVYCCAVNWEDA---------KGNTSAALELH------------EEFVN 266
            P+  V+N+LI  YC   N E A         K  T  ++ L+            E   N
Sbjct: 322 NPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAEN 381

Query: 267 GNGEL---GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
              E+   G+  HPD  +  S+++ LCK      A      M SR   P  ++ + L+ G
Sbjct: 382 ALEEILSSGLSIHPD--NCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCG 439

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            C  G+  +A +L+  +  +G      + N LI+      K+ EA  +  EM+  G+   
Sbjct: 440 LCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGL--- 496

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                               +D   +N L+ G C   ++   + L +++ + G +P++ T
Sbjct: 497 -------------------PMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYT 537

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEI--TVSILEE 501
           Y  ++ GLC  G ++ A  L    E K    +  I     M + Y K + I    ++  E
Sbjct: 538 YNFLLRGLCNVGKLDDAIKLWD--EFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNE 595

Query: 502 LLNK 505
           LL+K
Sbjct: 596 LLSK 599



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 97/417 (23%), Positives = 178/417 (42%), Gaps = 66/417 (15%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + ++ +L+  L    ++     + + +   G  P+ V  N L++ +CKM  +  A   
Sbjct: 288 PNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKI 347

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA---------SGLFT-------------- 181
              ++ K  +P  VTL  L++G C   +   A         SGL                
Sbjct: 348 KDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCK 407

Query: 182 --------KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233
                   +F       N  P+ +    ++ GLCKDG   +   L+  +  +G       
Sbjct: 408 KFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVT 467

Query: 234 YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDV 293
            N+LI   C A       G    A  + +E +    E G+    D ++Y ++I   C + 
Sbjct: 468 SNALIHGLCGA-------GKLPEASRIVKEML----ERGLPM--DRITYNALILGFCNEG 514

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353
            V+    L  +M  RGI PD+  Y+ L+ G C +G++DDA KL+   ++ G I +  +Y 
Sbjct: 515 KVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYG 574

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLV 413
            ++  Y K  ++E+  +L+ E++S                       K EL+  V+N ++
Sbjct: 575 IMMEGYCKANRIEDVENLFNELLS----------------------KKMELNSIVYNIII 612

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
              C++  + +A +L + +   G  PN  TY+ +I G+C  G +E A  L+ +M ++
Sbjct: 613 KAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKE 669



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 125/276 (45%), Gaps = 17/276 (6%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + ++N LL  L       + I L +     GL+ +  +  I+M  +CK   + D    
Sbjct: 533 PDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENL 592

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
              +L K    + +    +I+  C  G    A  L     +      ++PN   Y+S+I 
Sbjct: 593 FNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKS----KGILPNCATYSSLIH 648

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           G+C  G V   + L  +M+  G  P+   Y +LI  YC     + A+   S  LE+    
Sbjct: 649 GVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAE---STWLEM---- 701

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
                 +    HP+  +Y  +I+  CK   ++KA  L + MK  GI+PDVV Y+ L +G+
Sbjct: 702 ------ISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGF 755

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           C    +D+A K+   + +EG   D  +Y TL++ ++
Sbjct: 756 CKANDMDNAFKVCDQMATEGLPVDEITYTTLVHGWN 791



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 117/272 (43%), Gaps = 40/272 (14%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PDV S+ ++IN+LCK   ++ A ELF+ M+  GI P+VV Y+ +I+G C  GR+D+A +L
Sbjct: 218 PDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFEL 277

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
              +  +G  P+  +Y  LIN   K+   ++   +  EMI  G  P              
Sbjct: 278 KEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNP-------------- 323

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
                   ++ VFN L+DG CK   +  A ++   +      P  VT   ++ G C    
Sbjct: 324 --------NVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQ 375

Query: 457 IEKAYDLL-----------PDMEEKIRECL-------KAIELLHKMAKRYVKPDEITVSI 498
           IE A + L           PD    +   L        A      M  R  +P ++ +++
Sbjct: 376 IEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTM 435

Query: 499 LEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           L   L KD    E   L    L +    SK+T
Sbjct: 436 LVCGLCKDGKHLEATELWFRLLEKGSPASKVT 467


>gi|77557056|gb|ABA99852.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 726

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 159/365 (43%), Gaps = 31/365 (8%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  PD    N+ +N       V  A     R+ R    PDV T  CLI+GLC   +  +A
Sbjct: 192 GCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDA 251

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG-RGIYPDAFVYN 235
             +    +   C     P+ I Y +++  LCK+  V +VR L   M+   G++PD   YN
Sbjct: 252 MEMIGVMLQNGC----PPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYN 307

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
            LI             G+   ALE   E        G     D + Y +I++S C +  +
Sbjct: 308 VLIHGLA-------KHGHADEALEFLRE------SEGKRFRVDEVGYSAIVHSFCLNGRM 354

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
            +AKE+  +M S+G  PDVV YS+++DG+C +G +D ARK+   +    C P+T ++  L
Sbjct: 355 AEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTAL 414

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTV------- 408
           +N   K+ K  EA  L  +       P +         FR     K   D+ V       
Sbjct: 415 LNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGF 474

Query: 409 ------FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
                  N L+  LCK  +   A +  ++    G   NVV +T +I G   +G +E A  
Sbjct: 475 FPTTVEINLLIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALS 534

Query: 463 LLPDM 467
           L+ DM
Sbjct: 535 LMDDM 539



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 89/397 (22%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 64  GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERL-NTIGLLPDF 122
           G   + DA+     M+     P   S+ +++  L  +K       L +R+ N  GL PD 
Sbjct: 244 GARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQ 303

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           V+ N+L++   K     +A   L     K F  D V    ++   C+ G+  EA  +  +
Sbjct: 304 VTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGE 363

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
            ++  C+    P+V+ Y++++DG C+ G +++ R +   M      P+   + +L+   C
Sbjct: 364 MISKGCQ----PDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLC 419

Query: 243 CAVNWEDAKGNTSAALEL----HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
                    G TS A EL     EE+            P  ++Y  +++   ++  + ++
Sbjct: 420 KV-------GKTSEAWELLNKSEEEWWT----------PSDITYSVVMHGFRREGKLKES 462

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
            ++ + M  +G  P  V  + LI   C   +  +A+      +S+GC  +  ++ T+I+ 
Sbjct: 463 CDVVVQMLQKGFFPTTVEINLLIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHG 522

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
           +S+   +E ALSL  +M      PD        +                       L K
Sbjct: 523 FSRQGDLESALSLMDDMYLSNRHPDVVTYTVVVD----------------------ALGK 560

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
             RL+ A  L +K+   G  P  VTY  +I   C +G
Sbjct: 561 KGRLKEATGLVEKMLNRGVLPTPVTYRTVIHRYCEKG 597



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 110/273 (40%), Gaps = 43/273 (15%)

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
           AV    A+G+   A E    F   + +      P+V     +++ L    L D A+ +  
Sbjct: 97  AVLRAQARGDVRRAFEF---FRWADRQWRYRHAPEVFD--EMLSLLSNTRLHDPARRVVR 151

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            M  RG+      ++ L+  Y   G++  A ++   ++ +GC PD S  N  +N      
Sbjct: 152 LMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVNVLVVAG 211

Query: 364 KVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLR 423
           +V++AL     M  +GV P                      D+  +NCL+ GLC + R+ 
Sbjct: 212 RVDKALEFAERMRRVGVEP----------------------DVYTYNCLIKGLCGARRVV 249

Query: 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHK 483
            A E+   + + G  P+ ++Y  ++  LC E  +E+   LL  M                
Sbjct: 250 DAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDA------------ 297

Query: 484 MAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                + PD++T ++L   L K  +  E +  L
Sbjct: 298 ----GLFPDQVTYNVLIHGLAKHGHADEALEFL 326



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 110/286 (38%), Gaps = 67/286 (23%)

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M+  G  PD+ + +  ++   + GR+D A +    +   G  PD  +YN LI       +
Sbjct: 188 MQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARR 247

Query: 365 VEEALSLYGEMISMGVRPD----------------------------NSCIL-------- 388
           V +A+ + G M+  G  PD                            N   L        
Sbjct: 248 VVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYN 307

Query: 389 -------------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
                        EA E  R     +F +D   ++ +V   C + R+  A E+  ++   
Sbjct: 308 VLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISK 367

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKA 477
           G +P+VVTY+ ++ G C  G +++A  ++  M +                  K+ +  +A
Sbjct: 368 GCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEA 427

Query: 478 IELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
            ELL+K  + +  P +IT S++     ++    E  +++   L + 
Sbjct: 428 WELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKG 473


>gi|297738205|emb|CBI27406.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 110/451 (24%), Positives = 204/451 (45%), Gaps = 63/451 (13%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G V++  A  FF  MI     P + S+N LL  L         +  +  +   G+ PD
Sbjct: 282 KMGSVDV--AKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPD 339

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+ NIL N F  +  +S A+  + R+L    +PD+VT   LI G C  G   E+  L  
Sbjct: 340 IVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKE 399

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           K ++   + +++     Y  ++  LCK G +++  +L  +M+  G+ PD   Y       
Sbjct: 400 KMLSQGLKLSIVT----YTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTY------- 448

Query: 242 CCAVNWEDAKGNTSAALELHEEF---------------VNGNGELGVICHP--------- 277
                   ++G    A+EL+EE                ++G  E G I            
Sbjct: 449 --------SRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTK 500

Query: 278 -----DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
                +++ Y  +I+   K   + +A   +  +  +GI P +V ++SLI G+C  G++ +
Sbjct: 501 SDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAE 560

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC------ 386
           A KL  +I+  G +P + +Y TL+N Y +   +     +  EM +  ++P          
Sbjct: 561 AVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVK 620

Query: 387 -------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
                  + E+ +L + ++      D   +N ++   CK+  L+ A++L  ++ ++  +P
Sbjct: 621 GLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQP 680

Query: 440 NVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           + VTY V+I GLC+ G ++ A  LL  ++++
Sbjct: 681 SPVTYNVLINGLCVYGNLKDADRLLVTLQDQ 711



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 109/438 (24%), Positives = 184/438 (42%), Gaps = 83/438 (18%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P  VS N LM+ FCKM  V  A      +++    PDV +   L+ GLC+ G   EA   
Sbjct: 268 PSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEA--- 324

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             +F        V P+++ Y  + +G    G ++    +   M   G+ PD   Y  LI 
Sbjct: 325 -LEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILIC 383

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
            +C         GN   + +L E+ ++   +L ++      +Y  +++SLCK   +D+A 
Sbjct: 384 GHC-------QMGNIEESFKLKEKMLSQGLKLSIV------TYTVLLSSLCKSGRIDEAV 430

Query: 300 ELFLDMKSRGIIPDVVVY---------------------------SSLIDGYCLMGRIDD 332
            L  +M+  G+ PD++ Y                           S++I G    G I +
Sbjct: 431 ILLHEMEVIGLKPDLLTYSRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISE 490

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392
           A+  F S+       +   YN +I+ Y+K+  + EA+  Y ++I  G+ P          
Sbjct: 491 AQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISP---------- 540

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
                        +  FN L+ G CK  +L  A +L   +  +G  P  VTYT ++ G C
Sbjct: 541 ------------TIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYC 588

Query: 453 IEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHEC 512
            EG +   +D+L +ME K                  +KP +IT +++ + L K+   HE 
Sbjct: 589 EEGDMHSMFDMLHEMEAKA-----------------IKPTQITYTVVVKGLCKEGRLHES 631

Query: 513 MNLLPSFLSRNQEESKLT 530
           + LL    +R     ++T
Sbjct: 632 VQLLKYMYARGLFPDQIT 649



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/373 (21%), Positives = 166/373 (44%), Gaps = 45/373 (12%)

Query: 95  GALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFS 154
           GA++  + Y + +  S+      +  + +  NI+++ + K+  + +A  +  +I+ K  S
Sbjct: 486 GAISEAQMYFDSVTKSD------VAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGIS 539

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
           P +VT   LI G C +GK  EA  L            ++P  + Y ++++G C++G ++ 
Sbjct: 540 PTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVH----GLVPTSVTYTTLMNGYCEEGDMHS 595

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
           +  +  +M+ + I P    Y  +++  C        +G    +++L  +++   G     
Sbjct: 596 MFDMLHEMEAKAIKPTQITYTVVVKGLC-------KEGRLHESVQL-LKYMYARG----- 642

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
             PD ++Y ++I S CK   + KA +L   M    + P  V Y+ LI+G C+ G + DA 
Sbjct: 643 LFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDAD 702

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
           +L V+++ +       +Y T+I ++     V+ AL  + +M+  G               
Sbjct: 703 RLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERG--------------- 747

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
                  FE+ +  ++ +++ LCK   +  A   F  +  +G  P+     VM+      
Sbjct: 748 -------FEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRS 800

Query: 455 GGIEKAYDLLPDM 467
           G     +++   M
Sbjct: 801 GDPNSVFEIFAMM 813



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 105/468 (22%), Positives = 188/468 (40%), Gaps = 107/468 (22%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSL------LGALAGKKYYVNFICLSERLNTIGLLPD 121
           + +AL F N M +    P + ++N L      LG ++G    V      +R+   GL PD
Sbjct: 321 MEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVV------QRMLLNGLNPD 374

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA----- 176
            V+  IL+   C+M  + ++F    ++L +     +VT   L+  LC  G+  EA     
Sbjct: 375 LVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLH 434

Query: 177 ---------------------------------------------SGLFTKF------VA 185
                                                        SGLF K       + 
Sbjct: 435 EMEVIGLKPDLLTYSRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMY 494

Query: 186 FD--CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
           FD   + +V   +I Y  +IDG  K G + +    +  +  +GI P    +NSLI  +C 
Sbjct: 495 FDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFC- 553

Query: 244 AVNWEDAKGNTSAALELHEEF-VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302
                  KG  + A++L +   V+G         P  ++Y +++N  C++  +    ++ 
Sbjct: 554 ------KKGKLAEAVKLLDTIKVHG-------LVPTSVTYTTLMNGYCEEGDMHSMFDML 600

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
            +M+++ I P  + Y+ ++ G C  GR+ ++ +L   + + G  PD  +YNT+I S+ K 
Sbjct: 601 HEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKA 660

Query: 363 EKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRL 422
             +++A  L+ +M+   ++P                          +N L++GLC    L
Sbjct: 661 HDLQKAFQLHNQMLQHSLQPSP----------------------VTYNVLINGLCVYGNL 698

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           + A  L   L         V YT +I   C +G ++ A      M E+
Sbjct: 699 KDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVER 746



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 105/234 (44%), Gaps = 46/234 (19%)

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           +I+ LC+   +  A     +       P VV +++L+ G+C MG +D A+  F  +   G
Sbjct: 241 LIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYG 300

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL 404
            +PD  SYN L++       +EEAL    +M + GV P                      
Sbjct: 301 LLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEP---------------------- 338

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           D+  +N L +G      +  AW++ +++   G  P++VTYT++ICG C  G IE+++ L 
Sbjct: 339 DIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKL- 397

Query: 465 PDMEEKIRECLK---------------------AIELLHKMAKRYVKPDEITVS 497
              E+ + + LK                     A+ LLH+M    +KPD +T S
Sbjct: 398 --KEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYS 449



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 129/315 (40%), Gaps = 17/315 (5%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           + +A+  +  +I    +P + +FNSL+     K      + L + +   GL+P  V+   
Sbjct: 523 IGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTT 582

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           LMN +C+   +   F  L  +  K   P  +T   +++GLC +G+  E+  L     A  
Sbjct: 583 LMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYA-- 640

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               + P+ I Y ++I   CK   + K   L   M    + P    YN LI   C   N 
Sbjct: 641 --RGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNL 698

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
           +DA       + L ++ +              ++Y +II + C    V  A   F  M  
Sbjct: 699 KDAD---RLLVTLQDQSIRLTK----------VAYTTIIKAHCAKGDVQNALVFFHQMVE 745

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           RG    +  YS++I+  C    I DA+  F  + + G  PD      ++N++ +      
Sbjct: 746 RGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRSGDPNS 805

Query: 368 ALSLYGEMISMGVRP 382
              ++  MI  G+ P
Sbjct: 806 VFEIFAMMIKCGLLP 820


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 110/428 (25%), Positives = 190/428 (44%), Gaps = 57/428 (13%)

Query: 53  LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSER 112
           LL  L +N K+     +DAL  F+ M      P    +  +L  L   K   +   L   
Sbjct: 207 LLNGLCKNGKT-----DDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNT 261

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +   G  PD ++ N L++ FCK+  + +AF  L    ++ +   +     LI GL    +
Sbjct: 262 MKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKR 321

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
           + E      K      +  + P+V+ Y  +I G C+ G V+    +  DM  RG+ PD +
Sbjct: 322 YDEVQEWCRKMF----KAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTY 377

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            YN+LI+ +C         G    A  L  E    +      C P   +Y  +I  +C++
Sbjct: 378 CYNALIKGFCDV-------GLLDKARSLQLEISKND------CFPTSCTYTILICGMCRN 424

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE----------- 341
            L+D+A+++F  M++ G  P ++ +++LIDG C  G +++AR LF  +E           
Sbjct: 425 GLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRL 484

Query: 342 SEGC--IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN 399
           S+G   + DT+S  T++    +   + +A  L  ++   GV P                 
Sbjct: 485 SQGADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVP----------------- 527

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
                D+  +N L++G CK+  +  A++LF++L   G  P+ VTY  +I G       E 
Sbjct: 528 -----DIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREED 582

Query: 460 AYDLLPDM 467
           A+ +L  M
Sbjct: 583 AFRVLDQM 590



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 116/430 (26%), Positives = 188/430 (43%), Gaps = 44/430 (10%)

Query: 88  PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGR 147
           P+F+ L+ A A        +    ++   G  PD  + N +++   +      A     +
Sbjct: 132 PTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQ 191

Query: 148 ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207
           +L+  ++P+  T   L+ GLC  GK  +A  +F +      +  + PN + Y  I+ GLC
Sbjct: 192 MLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMT----QKGIPPNTMIYTIILSGLC 247

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
           +    + V  L   MK  G  PD+   N+L+  +C         G    A  L + F   
Sbjct: 248 QAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFC-------KLGQIDEAFALLQLFEKE 300

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
              LG+        Y S+I+ L +    D+ +E    M   GI PDVV+Y+ LI G+C +
Sbjct: 301 GYVLGIK------GYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEV 354

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---- 383
           G +D A  +   +   G  PDT  YN LI  +  +  +++A SL  E+      P     
Sbjct: 355 GMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTY 414

Query: 384 ---------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
                    N  + EA ++F  + N      +  FN L+DGLCK+  L  A  LF K+  
Sbjct: 415 TILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKM-E 473

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDL--LPDMEEKIREC---LKAIELLHKMAKRYV 489
            G  P++         L +  G ++  D   L  M E++ E    LKA +LL ++A   V
Sbjct: 474 IGKNPSLF--------LRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGV 525

Query: 490 KPDEITVSIL 499
            PD +T ++L
Sbjct: 526 VPDIMTYNVL 535



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 110/435 (25%), Positives = 192/435 (44%), Gaps = 71/435 (16%)

Query: 87  MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALG 146
           +  ++SL+  L   K Y        ++   G+ PD V   IL+  FC++  V  A   L 
Sbjct: 306 IKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLN 365

Query: 147 RILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGL 206
            + ++  SPD      LI+G C  G   +A  L  +    DC     P    Y  +I G+
Sbjct: 366 DMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDC----FPTSCTYTILICGM 421

Query: 207 CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG---------NTSAA 257
           C++G +++ R +F  M+  G  P    +N+LI   C A   E+A+          N S  
Sbjct: 422 CRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLF 481

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
           L L +         G     D  S  +++  LC+  L+ KA +L + +   G++PD++ Y
Sbjct: 482 LRLSQ---------GADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTY 532

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           + LI+G+C    I+ A KLF  ++ +G  PD+ +Y TLI+ + ++++ E+A  +  +M+ 
Sbjct: 533 NVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVK 592

Query: 378 MGVRPDNS---CILEAA--------------ELFRTL-------------HNTKFELDLT 407
            G  P ++   C++  +              +  R+L             H  K EL+  
Sbjct: 593 NGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLRSLPSQEDETLKLAEEHFEKGELEKA 652

Query: 408 VFNCLVD------------------GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
           V  CL++                  GLC++ R   A ++F  L     + N  +  ++I 
Sbjct: 653 V-RCLLEMNFKLNNFEIAPYTIWLIGLCQARRSEEALKIFLVLKECQMDVNPPSCVMLIN 711

Query: 450 GLCIEGGIEKAYDLL 464
           GLC +G +E A D+ 
Sbjct: 712 GLCKDGNLEMAVDIF 726



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 22/184 (11%)

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           +I+ L KD   D   ++  ++K+  I      +S LI  Y   G  + A + F  ++  G
Sbjct: 102 VIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFG 161

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL 404
           C PD  +YN++++   + E    AL++Y +M+ +   P+ +                   
Sbjct: 162 CKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRA------------------- 202

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
               F  L++GLCK+ +   A ++F ++ + G  PN + YT+++ GLC     +  + LL
Sbjct: 203 ---TFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLL 259

Query: 465 PDME 468
             M+
Sbjct: 260 NTMK 263



 Score = 39.3 bits (90), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 64/170 (37%), Gaps = 48/170 (28%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFM------------PSFNSLLGALAGKKYYVNFICL 109
           K+GE+E    L F+   I   P+ F+             S  +++  L      +    L
Sbjct: 458 KAGELEEARHL-FYKMEIGKNPSLFLRLSQGADRVMDTASLQTMVERLCESGLILKAYKL 516

Query: 110 SERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGL-- 167
             +L   G++PD ++ N+L+N FCK   ++ AF     +  K  SPD VT G LI G   
Sbjct: 517 LMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHR 576

Query: 168 ---------------------------------CMQGKFTEASGLFTKFV 184
                                            C +GK + A  L+ K++
Sbjct: 577 VDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYL 626


>gi|125580078|gb|EAZ21224.1| hypothetical protein OsJ_36877 [Oryza sativa Japonica Group]
          Length = 726

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 159/365 (43%), Gaps = 31/365 (8%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  PD    N+ +N       V  A     R+ R    PDV T  CLI+GLC   +  +A
Sbjct: 192 GCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDA 251

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG-RGIYPDAFVYN 235
             +    +   C     P+ I Y +++  LCK+  V +VR L   M+   G++PD   YN
Sbjct: 252 MEMIGVMLQNGC----PPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYN 307

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
            LI             G+   ALE   E        G     D + Y +I++S C +  +
Sbjct: 308 VLIHGLA-------KHGHADEALEFLRE------SEGKRFRVDEVGYSAIVHSFCLNGRM 354

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
            +AKE+  +M S+G  PDVV YS+++DG+C +G +D ARK+   +    C P+T ++  L
Sbjct: 355 AEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTAL 414

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTV------- 408
           +N   K+ K  EA  L  +       P +         FR     K   D+ V       
Sbjct: 415 LNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGF 474

Query: 409 ------FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
                  N L+  LCK  +   A +  ++    G   NVV +T +I G   +G +E A  
Sbjct: 475 FPTTVEINLLIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALS 534

Query: 463 LLPDM 467
           L+ DM
Sbjct: 535 LMDDM 539



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 89/397 (22%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 64  GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERL-NTIGLLPDF 122
           G   + DA+     M+     P   S+ +++  L  +K       L +R+ N  GL PD 
Sbjct: 244 GARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQ 303

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           V+ N+L++   K     +A   L     K F  D V    ++   C+ G+  EA  +  +
Sbjct: 304 VTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGE 363

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
            ++  C+    P+V+ Y++++DG C+ G +++ R +   M      P+   + +L+   C
Sbjct: 364 MISKGCQ----PDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLC 419

Query: 243 CAVNWEDAKGNTSAALEL----HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
                    G TS A EL     EE+            P  ++Y  +++   ++  + ++
Sbjct: 420 KV-------GKTSEAWELLNKSEEEWWT----------PSDITYSVVMHGFRREGKLKES 462

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
            ++ + M  +G  P  V  + LI   C   +  +A+      +S+GC  +  ++ T+I+ 
Sbjct: 463 CDVVVQMLQKGFFPTTVEINLLIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHG 522

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
           +S+   +E ALSL  +M      PD        +                       L K
Sbjct: 523 FSRQGDLESALSLMDDMYLSNRHPDVVTYTVVVD----------------------ALGK 560

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
             RL+ A  L +K+   G  P  VTY  +I   C +G
Sbjct: 561 KGRLKEATGLVEKMLNRGVLPTPVTYRTVIHRYCEKG 597



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 110/273 (40%), Gaps = 43/273 (15%)

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
           AV    A+G+   A E    F   + +      P+V     +++ L    L D A+ +  
Sbjct: 97  AVLRAQARGDVRRAFEF---FRWADRQWRYRHAPEVFD--EMLSLLSNTRLHDPARRVVR 151

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            M  RG+      ++ L+  Y   G++  A ++   ++ +GC PD S  N  +N      
Sbjct: 152 LMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVNVLVVAG 211

Query: 364 KVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLR 423
           +V++AL     M  +GV P                      D+  +NCL+ GLC + R+ 
Sbjct: 212 RVDKALEFAERMRRVGVEP----------------------DVYTYNCLIKGLCGARRVV 249

Query: 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHK 483
            A E+   + + G  P+ ++Y  ++  LC E  +E+   LL  M                
Sbjct: 250 DAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDA------------ 297

Query: 484 MAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                + PD++T ++L   L K  +  E +  L
Sbjct: 298 ----GLFPDQVTYNVLIHGLAKHGHADEALEFL 326



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 110/286 (38%), Gaps = 67/286 (23%)

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M+  G  PD+ + +  ++   + GR+D A +    +   G  PD  +YN LI       +
Sbjct: 188 MQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARR 247

Query: 365 VEEALSLYGEMISMGVRPD----------------------------NSCIL-------- 388
           V +A+ + G M+  G  PD                            N   L        
Sbjct: 248 VVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYN 307

Query: 389 -------------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
                        EA E  R     +F +D   ++ +V   C + R+  A E+  ++   
Sbjct: 308 VLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISK 367

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKA 477
           G +P+VVTY+ ++ G C  G +++A  ++  M +                  K+ +  +A
Sbjct: 368 GCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEA 427

Query: 478 IELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
            ELL+K  + +  P +IT S++     ++    E  +++   L + 
Sbjct: 428 WELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKG 473


>gi|356524758|ref|XP_003530995.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Glycine max]
          Length = 875

 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 118/479 (24%), Positives = 197/479 (41%), Gaps = 118/479 (24%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVF--------SPDVVTL 160
           L ER+N +G+LPD V+ N  ++  C+   V +A     RI R +          P+VVT 
Sbjct: 241 LVERMNELGVLPDVVTFNSRISALCRAGKVMEA----SRIFRDMQMDAELGLPRPNVVTF 296

Query: 161 GCLIRGLCMQGKFTEASGLFT------KFVAFDC-------------------------R 189
             +++G C  G   +A GL         F + +C                          
Sbjct: 297 NLMLKGFCKHGMMGDARGLVETMKKVGNFDSLECYNIWLMGLLRNGELLEARLVLDEMVA 356

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
             + PN   Y  ++DGLC++  ++  R L   M   G+YPD   Y++L+  YC      +
Sbjct: 357 KGIEPNAYTYNIMMDGLCRNHMLSDARGLMDLMMRNGVYPDTVAYSTLLHGYCSRGKVFE 416

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
           AK        LHE   NG       C P+  +  ++++SL K+    +A+E+   M  + 
Sbjct: 417 AKS------VLHEMIRNG-------CQPNTYTCNTLLHSLWKEGRTLEAEEMLQKMNEKC 463

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG----------------------CIP 347
             PD V  + +++G C  G +D A ++   + + G                      C+P
Sbjct: 464 YQPDTVTCNIVVNGLCRNGELDKASEIVSEMWTNGPTSLDKGNSFASLINSIHNVSNCLP 523

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLT 407
           D  +Y TLIN   K+ ++EEA   + EM++  +RPD+                       
Sbjct: 524 DGITYTTLINGLCKVGRLEEAKKKFIEMLAKNLRPDS----------------------V 561

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            ++  +   CK  ++ SA+ + K + R G    + TY  +I GL     I + Y L  +M
Sbjct: 562 TYDTFIWSFCKQGKISSAFRVLKDMERNGCSKTLQTYNALILGLGSNNQIFEIYGLKDEM 621

Query: 468 EEK-----------IRECL-------KAIELLHKMAKRYVKPDEITVSILEELLNKDEN 508
           +EK           I  CL        AI LLH+M  + + P+  +  IL +  +K  +
Sbjct: 622 KEKGISPDICTYNNIITCLCEGGKAKDAISLLHEMLDKGISPNVSSFKILIKAFSKSSD 680



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 123/502 (24%), Positives = 209/502 (41%), Gaps = 105/502 (20%)

Query: 67  ELNDALCFFNYMIHMQPT--PFMPSFNSLLGALAGKKYYVNFIC-LSERLNTIGLLPDFV 123
            ++DA+  F  +    P+  P +P +N LL +   + +   F+  L   +    + P   
Sbjct: 93  HVDDAITHFKSLRAQFPSLSPSLPLYNLLLRSTL-RHHRPGFVSWLYSDMLAARVAPQTY 151

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           + N+L++  C+      A     ++ +K   P+  TLG L+RGLC  G   +A  L    
Sbjct: 152 TFNLLIHSLCESRAFDHALQLFEKMPQKGCCPNEFTLGILVRGLCRAGLVKQALELVNNN 211

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
            +  CR   I N + Y +++   C++   N+   L   M   G+ PD   +NS I   C 
Sbjct: 212 NS--CR---IANRVVYNTLVSRFCREEMNNEAERLVERMNELGVLPDVVTFNSRISALCR 266

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
           A       G    A  +  + +  + ELG +  P+V+++  ++   CK  ++  A+ L  
Sbjct: 267 A-------GKVMEASRIFRD-MQMDAELG-LPRPNVVTFNLMLKGFCKHGMMGDARGLVE 317

Query: 304 DMK-----------------------------------SRGIIPDVVVYSSLIDGYCLMG 328
            MK                                   ++GI P+   Y+ ++DG C   
Sbjct: 318 TMKKVGNFDSLECYNIWLMGLLRNGELLEARLVLDEMVAKGIEPNAYTYNIMMDGLCRNH 377

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN-SC- 386
            + DAR L   +   G  PDT +Y+TL++ Y    KV EA S+  EMI  G +P+  +C 
Sbjct: 378 MLSDARGLMDLMMRNGVYPDTVAYSTLLHGYCSRGKVFEAKSVLHEMIRNGCQPNTYTCN 437

Query: 387 -----------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
                       LEA E+ + ++   ++ D    N +V+GLC++  L  A E+  ++   
Sbjct: 438 TLLHSLWKEGRTLEAEEMLQKMNEKCYQPDTVTCNIVVNGLCRNGELDKASEIVSEMWTN 497

Query: 436 GPE----------------------PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
           GP                       P+ +TYT +I GLC  G +E+A             
Sbjct: 498 GPTSLDKGNSFASLINSIHNVSNCLPDGITYTTLINGLCKVGRLEEAKK----------- 546

Query: 474 CLKAIELLHKMAKRYVKPDEIT 495
             K IE+L K     ++PD +T
Sbjct: 547 --KFIEMLAK----NLRPDSVT 562



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 104/433 (24%), Positives = 190/433 (43%), Gaps = 45/433 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLL-GALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           L+DA    + M+     P   ++++LL G  +  K +     L E +   G  P+  + N
Sbjct: 379 LSDARGLMDLMMRNGVYPDTVAYSTLLHGYCSRGKVFEAKSVLHEMIRN-GCQPNTYTCN 437

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV-- 184
            L++   K     +A   L ++  K + PD VT   ++ GLC  G+  +AS + ++    
Sbjct: 438 TLLHSLWKEGRTLEAEEMLQKMNEKCYQPDTVTCNIVVNGLCRNGELDKASEIVSEMWTN 497

Query: 185 ----------------AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
                           +     N +P+ I Y ++I+GLCK G + + +  F++M  + + 
Sbjct: 498 GPTSLDKGNSFASLINSIHNVSNCLPDGITYTTLINGLCKVGRLEEAKKKFIEMLAKNLR 557

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           PD+  Y++ I  +C        +G  S+A  + ++ +  NG     C   + +Y ++I  
Sbjct: 558 PDSVTYDTFIWSFC-------KQGKISSAFRVLKD-MERNG-----CSKTLQTYNALILG 604

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           L  +  + +   L  +MK +GI PD+  Y+++I   C  G+  DA  L   +  +G  P+
Sbjct: 605 LGSNNQIFEIYGLKDEMKEKGISPDICTYNNIITCLCEGGKAKDAISLLHEMLDKGISPN 664

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------NSCILEAAELFRT 396
            SS+  LI ++SK    + A  L+   +++  R +               + EA ELF  
Sbjct: 665 VSSFKILIKAFSKSSDFKVACELFEVALNICGRKEALYSLMFNELLAGGQLSEAKELFEV 724

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
             +    L   ++  L+  LC+  RL  A  L  KL   G   +  ++  +I GL   G 
Sbjct: 725 SLDRYLTLKNFMYKDLIARLCQDERLADANSLLYKLIDKGYGFDHASFMPVIDGLSKRGN 784

Query: 457 IEKAYDLLPDMEE 469
             +A +L   M E
Sbjct: 785 KRQADELAKRMME 797



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 107/261 (40%), Gaps = 18/261 (6%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           L PD V+ +  +  FCK   +S AF  L  + R   S  + T   LI GL    +  E  
Sbjct: 556 LRPDSVTYDTFIWSFCKQGKISSAFRVLKDMERNGCSKTLQTYNALILGLGSNNQIFEIY 615

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
           GL  +         + P++  Y +II  LC+ G       L  +M  +GI P+   +  L
Sbjct: 616 GLKDEMK----EKGISPDICTYNNIITCLCEGGKAKDAISLLHEMLDKGISPNVSSFKIL 671

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           I+ +  + +++        A EL E  +N       IC      Y  + N L     + +
Sbjct: 672 IKAFSKSSDFK-------VACELFEVALN-------ICGRKEALYSLMFNELLAGGQLSE 717

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           AKELF     R +     +Y  LI   C   R+ DA  L   +  +G   D +S+  +I+
Sbjct: 718 AKELFEVSLDRYLTLKNFMYKDLIARLCQDERLADANSLLYKLIDKGYGFDHASFMPVID 777

Query: 358 SYSKIEKVEEALSLYGEMISM 378
             SK     +A  L   M+ +
Sbjct: 778 GLSKRGNKRQADELAKRMMEL 798


>gi|15219974|ref|NP_173709.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806406|sp|P0C7Q9.1|PPR56_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g22960, mitochondrial; Flags: Precursor
 gi|332192194|gb|AEE30315.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 718

 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 113/448 (25%), Positives = 197/448 (43%), Gaps = 64/448 (14%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           TP+  SFN L+     +  + +   +++ +   G+ P   + NI +   C    + DA  
Sbjct: 307 TPY--SFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDA-- 362

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
               +L  + +PDVV+   L+ G    GKF EAS LF    A D    + P+++ Y ++I
Sbjct: 363 --RELLSSMAAPDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGD----IHPSIVTYNTLI 416

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
           DGLC+ G +   + L  +M  + I+PD   Y +L++ +          GN S A E+++E
Sbjct: 417 DGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFV-------KNGNLSMATEVYDE 469

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM-KSRGIIPDVVVYSSLID 322
            +           PD  +Y +      +    DKA  L  +M  +    PD+ +Y+  ID
Sbjct: 470 MLRKG------IKPDGYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRID 523

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
           G C +G +  A +    I   G +PD  +Y T+I  Y +  + + A +LY EM+   + P
Sbjct: 524 GLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYP 583

Query: 383 DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
                                  +  +  L+ G  K+ RL  A++   ++ + G  PNV+
Sbjct: 584 S----------------------VITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVM 621

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEEK------------------IRECLKAIELLHKM 484
           T+  ++ G+C  G I++AY  L  MEE+                    +  + ++L  +M
Sbjct: 622 THNALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLISKNCDFEKWEEVVKLYKEM 681

Query: 485 AKRYVKPDEITVSILEELLNKDENCHEC 512
             + ++PD  T   L + L KD    E 
Sbjct: 682 LDKEIEPDGYTHRALFKHLEKDHESREV 709



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 123/480 (25%), Positives = 196/480 (40%), Gaps = 59/480 (12%)

Query: 72  LCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131
           L  F  MI     P + + N +L  L   +       + E +   G++P  ++ N +++ 
Sbjct: 188 LLSFEKMIRKGFLPSVRNCNIVLKVLRDSRMMNKASAVYETMIEHGIMPTVITFNTMLDS 247

Query: 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
             K   +         + R+      VT   LI G    GK  EA     +F     R  
Sbjct: 248 CFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEAR----RFHGDMRRSG 303

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
                  +  +I+G CK G  +    +  +M   GIYP    YN    +Y CA+      
Sbjct: 304 FAVTPYSFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYN----IYICALC---DF 356

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
           G    A EL          L  +  PDV+SY ++++   K     +A  LF D+++  I 
Sbjct: 357 GRIDDAREL----------LSSMAAPDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIH 406

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           P +V Y++LIDG C  G ++ A++L   + ++   PD  +Y TL+  + K   +  A  +
Sbjct: 407 PSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEV 466

Query: 372 YGEMISMGVRPDNSCILEAA-----------------ELFRTLHNTKFELDLTVFNCLVD 414
           Y EM+  G++PD       A                 E+  T H+     DLT++N  +D
Sbjct: 467 YDEMLRKGIKPDGYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHAP---DLTIYNVRID 523

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM------- 467
           GLCK   L  A E  +K+ R G  P+ VTYT +I G    G  + A +L  +M       
Sbjct: 524 GLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYP 583

Query: 468 -----------EEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                        K     +A +   +M KR V+P+ +T + L   + K  N  E    L
Sbjct: 584 SVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRYL 643


>gi|125559559|gb|EAZ05095.1| hypothetical protein OsI_27286 [Oryza sativa Indica Group]
          Length = 551

 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 161/341 (47%), Gaps = 43/341 (12%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P V  Y  ++DGL     + KV  +F +MK + +  D + Y+S+I  YC A       GN
Sbjct: 211 PTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRA-------GN 263

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
              A E+ +E V GNG       P+  +Y ++IN  CK   ++ A+ L  DM+ RG+  +
Sbjct: 264 VRRASEVFDECV-GNG-----IEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGIN 317

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
            +V++++IDGYC    +D A ++ + +E  G   D  +YNTL     +  +++EA +L  
Sbjct: 318 QIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLR 377

Query: 374 EMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
            MI  GVRP++               ++EA  LFR +     E  L  +N ++DG  K  
Sbjct: 378 IMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKG 437

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIEL 480
            +R A    K++ + G  P++ +Y  ++ G C+ G ++                  A+ L
Sbjct: 438 SIREAERFKKEMEKKGLVPDIYSYAALVHGHCVNGKVD-----------------VALRL 480

Query: 481 LHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
             +M +R  KP+ +  + L   L K+    E   L  + L 
Sbjct: 481 FEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQLYDNMLG 521



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 151/345 (43%), Gaps = 41/345 (11%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + ++  L+  L+  +       + E + +  L  D    + ++N +C+   V  A   
Sbjct: 211 PTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEV 270

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
               +     P+  T G LI G C  G+   A  L T          V  N I + ++ID
Sbjct: 271 FDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQV----RGVGINQIVFNTMID 326

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL----------------IRV-------- 240
           G C+   V+K   + + M+  GI  D + YN+L                +R+        
Sbjct: 327 GYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRP 386

Query: 241 ----YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
               Y   ++    +G+   A  L  E   GNG       P +++Y  +++   K   + 
Sbjct: 387 NHVSYTTLISIHCNEGDMVEARRLFREMA-GNG-----AEPSLVTYNVMMDGYIKKGSIR 440

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A+    +M+ +G++PD+  Y++L+ G+C+ G++D A +LF  ++  G  P+  +Y  LI
Sbjct: 441 EAERFKKEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALI 500

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK 401
           +  +K  + EEA  LY  M+  G+ PD++     + L  +LH  K
Sbjct: 501 SGLAKEGRSEEAFQLYDNMLGDGLTPDDALY---SALVGSLHTDK 542



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 126/313 (40%), Gaps = 64/313 (20%)

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G    A+ L  K  A  C  +V P  +  + ++DG CK G V   R L  +M   G+  +
Sbjct: 121 GHLDTAADLL-KQAATSCPDSVTP--LSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVN 177

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
           A                                                L Y S++++  
Sbjct: 178 A------------------------------------------------LCYNSLLDAYT 189

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           ++   D+  E+   M++ GI P V  Y+ L+DG      I     +F  ++S+    D  
Sbjct: 190 REKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVY 249

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI------------LEAAELFRT-L 397
            Y+++IN+Y +   V  A  ++ E +  G+ P+                +EAAE+  T +
Sbjct: 250 FYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDM 309

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                 ++  VFN ++DG C+   +  A E+   + + G E +V TY  + CGL     +
Sbjct: 310 QVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRM 369

Query: 458 EKAYDLLPDMEEK 470
           ++A +LL  M EK
Sbjct: 370 DEAKNLLRIMIEK 382


>gi|413936859|gb|AFW71410.1| hypothetical protein ZEAMMB73_528560 [Zea mays]
          Length = 671

 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 107/402 (26%), Positives = 184/402 (45%), Gaps = 60/402 (14%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           + ++ + PD  + N ++   C       A   +  ++R    P+ VT    IR  C  G 
Sbjct: 207 IASMPVAPDTYTYNTVLKGLCCAKQWEQAEELMREMIRNSCHPNEVTFATQIRAFCQNGL 266

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
              A  L  +   + C     P+VI Y+++++G  + G V++   L   M  R   P+  
Sbjct: 267 LDRAVELLEQMPKYGC----TPDVIIYSTLVNGFSEHGRVDEALKLLNTMLCR---PNTV 319

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            YN+ ++  C A  WE+         EL  E V  +      C P+  ++ ++INSLC++
Sbjct: 320 CYNAALKGLCIAGRWEEVG-------ELIAEMVRKD------CPPNDATFSTLINSLCQN 366

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
            LV+ A E+   M+  G +PDVV Y+++I  +    R DDA KL  S+    C PDT S+
Sbjct: 367 RLVEYAVEVLEQMQKYGYMPDVVSYNTIISCFSDQARADDALKLLKSML---CKPDTISF 423

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCL 412
           N ++    K ++  +A+ L  +M+    R                      ++   FN L
Sbjct: 424 NAVLKCLCKAKRWYDAVELVAKMLKKDCR----------------------INEMTFNIL 461

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI- 471
           +D LC++ +++ A E+F+ +P+Y   P++VTY+ +I G   +G  E A+DL   M  +  
Sbjct: 462 IDSLCQNGQVKDAIEVFELMPKYRCMPDIVTYSSLINGFSEQGLDEMAFDLFRSMPCRAD 521

Query: 472 ----RECLKAI----------ELLHKMAKRYVKPDEITVSIL 499
                  LK +          EL+  M      P+E+T +IL
Sbjct: 522 IFSYNATLKGLCMAARWDDAGELIADMVTEDCLPNEVTFNIL 563



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 109/461 (23%), Positives = 199/461 (43%), Gaps = 64/461 (13%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           MI     P   +F + + A          + L E++   G  PD +  + L+N F +   
Sbjct: 242 MIRNSCHPNEVTFATQIRAFCQNGLLDRAVELLEQMPKYGCTPDVIIYSTLVNGFSEHGR 301

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           V +A   L  +L +   P+ V     ++GLC+ G++ E   L  + V  DC PN      
Sbjct: 302 VDEALKLLNTMLCR---PNTVCYNAALKGLCIAGRWEEVGELIAEMVRKDCPPNDA---- 354

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            ++++I+ LC++  V     +   M+  G  PD   YN++I  +      +DA       
Sbjct: 355 TFSTLINSLCQNRLVEYAVEVLEQMQKYGYMPDVVSYNTIISCFSDQARADDA------- 407

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
           L+L +          ++C PD +S+ +++  LCK      A EL   M  +    + + +
Sbjct: 408 LKLLK---------SMLCKPDTISFNAVLKCLCKAKRWYDAVELVAKMLKKDCRINEMTF 458

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM-- 375
           + LID  C  G++ DA ++F  +    C+PD  +Y++LIN +S+    E A  L+  M  
Sbjct: 459 NILIDSLCQNGQVKDAIEVFELMPKYRCMPDIVTYSSLINGFSEQGLDEMAFDLFRSMPC 518

Query: 376 -------------ISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRL 422
                        + M  R D     +A EL   +       +   FN L+  LC+   +
Sbjct: 519 RADIFSYNATLKGLCMAARWD-----DAGELIADMVTEDCLPNEVTFNILISSLCQKGLV 573

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM--------------- 467
             A ++++++P+YG  P++ TY  +I G   +G ++ A   L  M               
Sbjct: 574 NRAIDVYEQMPKYGITPDIFTYNALINGYSEQGRLDDALKFLSTMPCEPDTISYNSILKG 633

Query: 468 ---EEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505
               E+ ++   A +L+ +M ++   P+E+T     +L  K
Sbjct: 634 LCRAERWKD---AEKLVTEMLRKNCTPNEVTFKYANQLFIK 671



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 174/396 (43%), Gaps = 56/396 (14%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
           P V++   LI+ LC + +  +A  +     A     +   + + + +++ G C+DG +  
Sbjct: 114 PAVISCNILIKKLCARRRLADAERVLEALKA-----SGAADAVSHNTLVAGYCRDGSLGD 168

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
              +    +  G   +   Y +LI  YC         G  + AL L            + 
Sbjct: 169 AERVVEAARASGT-ANVVTYTALIDGYC-------RSGRLADALRLIA---------SMP 211

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
             PD  +Y +++  LC     ++A+EL  +M      P+ V +++ I  +C  G +D A 
Sbjct: 212 VAPDTYTYNTVLKGLCCAKQWEQAEELMREMIRNSCHPNEVTFATQIRAFCQNGLLDRAV 271

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI------- 387
           +L   +   GC PD   Y+TL+N +S+  +V+EAL L   M+    RP+  C        
Sbjct: 272 ELLEQMPKYGCTPDVIIYSTLVNGFSEHGRVDEALKLLNTML---CRPNTVCYNAALKGL 328

Query: 388 ------LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
                  E  EL   +       +   F+ L++ LC++  +  A E+ +++ +YG  P+V
Sbjct: 329 CIAGRWEEVGELIAEMVRKDCPPNDATFSTLINSLCQNRLVEYAVEVLEQMQKYGYMPDV 388

Query: 442 VTYTVMICGLCIEGGIEKAYDLLPDMEEK--------IRECL-------KAIELLHKMAK 486
           V+Y  +I     +   + A  LL  M  K        + +CL        A+EL+ KM K
Sbjct: 389 VSYNTIISCFSDQARADDALKLLKSMLCKPDTISFNAVLKCLCKAKRWYDAVELVAKMLK 448

Query: 487 RYVKPDEITVSILEELLNKD---ENCHECMNLLPSF 519
           +  + +E+T +IL + L ++   ++  E   L+P +
Sbjct: 449 KDCRINEMTFNILIDSLCQNGQVKDAIEVFELMPKY 484



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 104/246 (42%), Gaps = 44/246 (17%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P V+S   +I  LC    +  A+ +   +K+ G   D V +++L+ GYC  G + DA ++
Sbjct: 114 PAVISCNILIKKLCARRRLADAERVLEALKASGAA-DAVSHNTLVAGYCRDGSLGDAERV 172

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
             +  + G   +  +Y  LI+ Y +  ++ +AL L   + SM V PD             
Sbjct: 173 VEAARASG-TANVVTYTALIDGYCRSGRLADALRL---IASMPVAPDT------------ 216

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
                       +N ++ GLC + +   A EL +++ R    PN VT+   I   C  G 
Sbjct: 217 ----------YTYNTVLKGLCCAKQWEQAEELMREMIRNSCHPNEVTFATQIRAFCQNGL 266

Query: 457 IEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           +++A                 +ELL +M K    PD I  S L    ++     E + LL
Sbjct: 267 LDRA-----------------VELLEQMPKYGCTPDVIIYSTLVNGFSEHGRVDEALKLL 309

Query: 517 PSFLSR 522
            + L R
Sbjct: 310 NTMLCR 315


>gi|357121994|ref|XP_003562701.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Brachypodium distachyon]
          Length = 726

 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 115/408 (28%), Positives = 180/408 (44%), Gaps = 43/408 (10%)

Query: 90  FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149
           FN+++     +      I + + +   GL+PD  S +IL++  CK   V   +  L  + 
Sbjct: 284 FNAVIQGFCREGQVQEAIEVFDAMKKGGLVPDTHSYSILVDGLCKQGDVLTGYDLLVEMA 343

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD 209
           R   +P +V+   L+ GLC  GK   A  LF +            + I Y+ I++G C+ 
Sbjct: 344 RNGIAPTLVSYSSLLHGLCRAGKVELAFELFRRLE----EQGFKHDHIVYSIILNGCCQH 399

Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE------ 263
             +  V  L+ DM      PDA+ Y SLI  +C   N  DA G     L+          
Sbjct: 400 LNIEVVCDLWNDMVHHNFVPDAYNYTSLIYAFCRHRNLTDALGVFELMLDSGVSPNVVTC 459

Query: 264 --FVNGNG----------------ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
              V+G G                + G++  P++  Y  IIN LCK    D    +F DM
Sbjct: 460 TILVDGFGKERMIDEAFLFLHKVRQFGIV--PNLCMYRVIINGLCKVNKSDHVWGIFADM 517

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
             RG +PD VVYS +ID +    ++ +A +LF  +  EG  P+  +Y +LIN     +++
Sbjct: 518 IKRGYVPDTVVYSIIIDSFVKALKLPEAFRLFHKMLDEGTKPNVFTYTSLINGLCHDDRL 577

Query: 366 EEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCL 412
            E ++L+  MI  G+ PD              S +  A E+FR +       D  ++ CL
Sbjct: 578 PEVVTLFKHMIWEGLTPDRILYTSLIVCYCKRSNMKAALEIFRGMGKLGLSADAFLYTCL 637

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
           + G  K   +  A  L +++   G  P+VVTYT +I G    G   KA
Sbjct: 638 IGGFSKVLAMDGAQCLMEEMTNKGLTPSVVTYTNLIIGYFKIGDERKA 685



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 146/350 (41%), Gaps = 53/350 (15%)

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N ++  FC+   V +A      + +    PD  +   L+ GLC QG       L  +  
Sbjct: 284 FNAVIQGFCREGQVQEAIEVFDAMKKGGLVPDTHSYSILVDGLCKQGDVLTGYDLLVEMA 343

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
               R  + P ++ Y+S++ GLC+ G V     LF  ++ +G   D  VY+ ++   C  
Sbjct: 344 ----RNGIAPTLVSYSSLLHGLCRAGKVELAFELFRRLEEQGFKHDHIVYSIILNGCCQH 399

Query: 245 VN-------WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           +N       W D          +H  FV           PD  +Y S+I + C+   +  
Sbjct: 400 LNIEVVCDLWNDM---------VHHNFV-----------PDAYNYTSLIYAFCRHRNLTD 439

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A  +F  M   G+ P+VV  + L+DG+     ID+A      +   G +P+   Y  +IN
Sbjct: 440 ALGVFELMLDSGVSPNVVTCTILVDGFGKERMIDEAFLFLHKVRQFGIVPNLCMYRVIIN 499

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
              K+ K +    ++ +MI  G  PD                        V++ ++D   
Sbjct: 500 GLCKVNKSDHVWGIFADMIKRGYVPDT----------------------VVYSIIIDSFV 537

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           K+ +L  A+ LF K+   G +PNV TYT +I GLC +  + +   L   M
Sbjct: 538 KALKLPEAFRLFHKMLDEGTKPNVFTYTSLINGLCHDDRLPEVVTLFKHM 587



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 107/445 (24%), Positives = 194/445 (43%), Gaps = 49/445 (11%)

Query: 91  NSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK--MIGVSDAFVALGRI 148
           N LL  L  +   +    L + + + G  P+  S ++LM+ +     + +++AF  L  +
Sbjct: 178 NFLLKCLVERNQIIYARSLFDDMKSSGPSPNVYSYSVLMSAYTHGDRLYLAEAFELLSEM 237

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
             K   P+  T G  + GL    +   A      F+   C+     N  C+ ++I G C+
Sbjct: 238 EMKGVKPNAATYGTYLYGLSRTRQVASA----WNFLQMLCQRGNPCNTYCFNAVIQGFCR 293

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           +G V +   +F  MK  G+ PD   Y+ L+   C        +G+     +L  E    N
Sbjct: 294 EGQVQEAIEVFDAMKKGGLVPDTHSYSILVDGLC-------KQGDVLTGYDLLVEMAR-N 345

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
           G       P ++SY S+++ LC+   V+ A ELF  ++ +G   D +VYS +++G C   
Sbjct: 346 G-----IAPTLVSYSSLLHGLCRAGKVELAFELFRRLEEQGFKHDHIVYSIILNGCCQHL 400

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-NSCI 387
            I+    L+  +     +PD  +Y +LI ++ +   + +AL ++  M+  GV P+  +C 
Sbjct: 401 NIEVVCDLWNDMVHHNFVPDAYNYTSLIYAFCRHRNLTDALGVFELMLDSGVSPNVVTCT 460

Query: 388 LEA---------AELFRTLHNTK-FEL--DLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
           +            E F  LH  + F +  +L ++  +++GLCK  +    W +F  + + 
Sbjct: 461 ILVDGFGKERMIDEAFLFLHKVRQFGIVPNLCMYRVIINGLCKVNKSDHVWGIFADMIKR 520

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEIT 495
           G  P+ V Y+++I                 D   K  +  +A  L HKM     KP+  T
Sbjct: 521 GYVPDTVVYSIII-----------------DSFVKALKLPEAFRLFHKMLDEGTKPNVFT 563

Query: 496 VSILEELLNKDENCHECMNLLPSFL 520
            + L   L  D+   E + L    +
Sbjct: 564 YTSLINGLCHDDRLPEVVTLFKHMI 588



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 129/308 (41%), Gaps = 54/308 (17%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
            +PD  +   L+  FC+   ++DA      +L    SP+VVT   L+ G   +    EA 
Sbjct: 417 FVPDAYNYTSLIYAFCRHRNLTDALGVFELMLDSGVSPNVVTCTILVDGFGKERMIDEAF 476

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
               K   F     ++PN+  Y  II+GLCK    + V  +F DM  RG  PD  VY+ +
Sbjct: 477 LFLHKVRQF----GIVPNLCMYRVIINGLCKVNKSDHVWGIFADMIKRGYVPDTVVYSII 532

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           I  +               AL+L E F   +  L     P+V +Y S+IN LC D  + +
Sbjct: 533 IDSFV-------------KALKLPEAFRLFHKMLDEGTKPNVFTYTSLINGLCHDDRLPE 579

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCL-------------MGRI-------------- 330
              LF  M   G+ PD ++Y+SLI  YC              MG++              
Sbjct: 580 VVTLFKHMIWEGLTPDRILYTSLIVCYCKRSNMKAALEIFRGMGKLGLSADAFLYTCLIG 639

Query: 331 --------DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
                   D A+ L   + ++G  P   +Y  LI  Y KI    +A   Y  M+  G+ P
Sbjct: 640 GFSKVLAMDGAQCLMEEMTNKGLTPSVVTYTNLIIGYFKIGDERKANMTYNSMLQAGITP 699

Query: 383 DN--SCIL 388
           D   SCIL
Sbjct: 700 DAKLSCIL 707



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 143/370 (38%), Gaps = 55/370 (14%)

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCA--------------VNWEDAKGNTSA----- 256
           R LF DMK  G  P+ + Y+ L+  Y                 +  +  K N +      
Sbjct: 194 RSLFDDMKSSGPSPNVYSYSVLMSAYTHGDRLYLAEAFELLSEMEMKGVKPNAATYGTYL 253

Query: 257 -ALELHEEFVNGNGELGVICHPD--VLSYC--SIINSLCKDVLVDKAKELFLDMKSRGII 311
             L    +  +    L ++C       +YC  ++I   C++  V +A E+F  MK  G++
Sbjct: 254 YGLSRTRQVASAWNFLQMLCQRGNPCNTYCFNAVIQGFCREGQVQEAIEVFDAMKKGGLV 313

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           PD   YS L+DG C  G +     L V +   G  P   SY++L++   +  KVE A  L
Sbjct: 314 PDTHSYSILVDGLCKQGDVLTGYDLLVEMARNGIAPTLVSYSSLLHGLCRAGKVELAFEL 373

Query: 372 YGEMISMGVRPD--------NSC-----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
           +  +   G + D        N C     I    +L+  + +  F  D   +  L+   C+
Sbjct: 374 FRRLEEQGFKHDHIVYSIILNGCCQHLNIEVVCDLWNDMVHHNFVPDAYNYTSLIYAFCR 433

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE--------- 469
              L  A  +F+ +   G  PNVVT T+++ G   E  I++A+  L  + +         
Sbjct: 434 HRNLTDALGVFELMLDSGVSPNVVTCTILVDGFGKERMIDEAFLFLHKVRQFGIVPNLCM 493

Query: 470 ---------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
                    K+ +      +   M KR   PD +  SI+ +   K     E   L    L
Sbjct: 494 YRVIINGLCKVNKSDHVWGIFADMIKRGYVPDTVVYSIIIDSFVKALKLPEAFRLFHKML 553

Query: 521 SRNQEESKLT 530
               + +  T
Sbjct: 554 DEGTKPNVFT 563


>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Cucumis sativus]
          Length = 822

 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 167/334 (50%), Gaps = 39/334 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL  D ++ N L+  FC    V   F     + ++   PD+ T   L+RGLC  GK  +A
Sbjct: 518 GLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDA 577

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L+ +F A      +I N+  Y  +++G CK   +  V  LF ++  + +  ++ VYN 
Sbjct: 578 IKLWDEFKA----SGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNI 633

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           +I+ +C         GN +AAL+L E   +     G++  P+  +Y S+I+ +C   LV+
Sbjct: 634 IIKAHC-------QNGNVAAALQLLENMKSK----GIL--PNCATYSSLIHGVCNIGLVE 680

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            AK L  +M+  G +P+VV Y++LI GYC +G++D A   ++ + S    P+  +Y  +I
Sbjct: 681 DAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMI 740

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           + Y K+  +E+A +L  +M   G+ P                      D+  +N L +G 
Sbjct: 741 DGYCKLGNMEKANNLLIKMKESGIVP----------------------DVVTYNVLTNGF 778

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
           CK+  + +A+++  ++   G   + +TYT ++ G
Sbjct: 779 CKANDMDNAFKVCDQMATEGLPVDEITYTTLVHG 812



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 103/403 (25%), Positives = 178/403 (44%), Gaps = 48/403 (11%)

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           +++  CK      AF     +L + F P  + L  L+ GLC  GK  EA+ L+ + +   
Sbjct: 424 VVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLL--- 480

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
                  + +   ++I GLC  G + +   +  +M  RG+  D   YN+LI  +C     
Sbjct: 481 -EKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFC----- 534

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
              +G       L EE      + G+   PD+ +Y  ++  LC    +D A +L+ + K+
Sbjct: 535 --NEGKVEGCFRLREEMT----KRGI--QPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKA 586

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            G+I ++  Y  +++GYC   RI+D   LF  + S+    ++  YN +I ++ +   V  
Sbjct: 587 SGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAA 646

Query: 368 ALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDLTVFNCLVD 414
           AL L   M S G+ P+ +              + +A  L   +    F  ++  +  L+ 
Sbjct: 647 ALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIG 706

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE----- 469
           G CK  ++ +A   + ++  +   PN  TYTVMI G C  G +EKA +LL  M+E     
Sbjct: 707 GYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVP 766

Query: 470 -------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                        K  +   A ++  +MA   +  DEIT + L
Sbjct: 767 DVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTL 809



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 115/447 (25%), Positives = 189/447 (42%), Gaps = 57/447 (12%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + + N LL +L     +    C   R+ + G  PD  S   ++N  CK   + +A   
Sbjct: 207 PSLKTCNFLLSSLVKANEFEK-CCEVFRVMSEGACPDVFSFTNVINALCKGGKMENAIEL 265

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
             ++ +   SP+VVT  C+I GLC  G+   A  L  K         V PN+  Y ++I+
Sbjct: 266 FMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTV----KGVQPNLKTYGALIN 321

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA---------KGNTS 255
           GL K  F +KV  +  +M G G  P+  V+N+LI  YC   N E A         K  T 
Sbjct: 322 GLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITP 381

Query: 256 AALELH------------EEFVNGNGEL---GVICHPDVLSYCSIINSLCKDVLVDKAKE 300
            ++ L+            E   N   E+   G+  HPD  +  S+++ LCK      A  
Sbjct: 382 TSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPD--NCYSVVHWLCKKFRYHSAFR 439

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
               M SR   P  ++ + L+ G C  G+  +A +L+  +  +G      + N LI+   
Sbjct: 440 FTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLC 499

Query: 361 KIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
              K+ EA  +  EM+  G+                       +D   +N L+ G C   
Sbjct: 500 GAGKLPEASRIVKEMLERGL----------------------PMDRITYNALILGFCNEG 537

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIEL 480
           ++   + L +++ + G +P++ TY  ++ GLC  G ++ A  L    E K    +  I  
Sbjct: 538 KVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWD--EFKASGLISNIHT 595

Query: 481 LHKMAKRYVKPDEI--TVSILEELLNK 505
              M + Y K + I    ++  ELL+K
Sbjct: 596 YGIMMEGYCKANRIEDVENLFNELLSK 622



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 101/419 (24%), Positives = 182/419 (43%), Gaps = 70/419 (16%)

Query: 85  PFMPSFNSLLGALAGKKYY--VNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142
           P + ++ +L+  L    ++  VN + L E + + G  P+ V  N L++ +CKM  +  A 
Sbjct: 311 PNLKTYGALINGLIKLNFFDKVNHV-LDEMIGS-GFNPNVVVFNNLIDGYCKMGNIEGAL 368

Query: 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA---------SGLFT------------ 181
                ++ K  +P  VTL  L++G C   +   A         SGL              
Sbjct: 369 KIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWL 428

Query: 182 ----------KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
                     +F       N  P+ +    ++ GLCKDG   +   L+  +  +G     
Sbjct: 429 CKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASK 488

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
              N+LI   C A       G    A  + +E +    E G+    D ++Y ++I   C 
Sbjct: 489 VTSNALIHGLCGA-------GKLPEASRIVKEML----ERGLPM--DRITYNALILGFCN 535

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
           +  V+    L  +M  RGI PD+  Y+ L+ G C +G++DDA KL+   ++ G I +  +
Sbjct: 536 EGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHT 595

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNC 411
           Y  ++  Y K  ++E+  +L+ E++S                       K EL+  V+N 
Sbjct: 596 YGIMMEGYCKANRIEDVENLFNELLS----------------------KKMELNSIVYNI 633

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           ++   C++  + +A +L + +   G  PN  TY+ +I G+C  G +E A  L+ +M ++
Sbjct: 634 IIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKE 692



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 125/276 (45%), Gaps = 17/276 (6%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + ++N LL  L       + I L +     GL+ +  +  I+M  +CK   + D    
Sbjct: 556 PDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENL 615

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
              +L K    + +    +I+  C  G    A  L     +      ++PN   Y+S+I 
Sbjct: 616 FNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKS----KGILPNCATYSSLIH 671

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           G+C  G V   + L  +M+  G  P+   Y +LI  YC     + A+   S  LE+    
Sbjct: 672 GVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAE---STWLEM---- 724

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
                 +    HP+  +Y  +I+  CK   ++KA  L + MK  GI+PDVV Y+ L +G+
Sbjct: 725 ------ISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGF 778

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           C    +D+A K+   + +EG   D  +Y TL++ ++
Sbjct: 779 CKANDMDNAFKVCDQMATEGLPVDEITYTTLVHGWN 814



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 117/272 (43%), Gaps = 40/272 (14%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PDV S+ ++IN+LCK   ++ A ELF+ M+  GI P+VV Y+ +I+G C  GR+D+A +L
Sbjct: 241 PDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFEL 300

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
              +  +G  P+  +Y  LIN   K+   ++   +  EMI  G  P              
Sbjct: 301 KEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNP-------------- 346

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
                   ++ VFN L+DG CK   +  A ++   +      P  VT   ++ G C    
Sbjct: 347 --------NVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQ 398

Query: 457 IEKAYDLL-----------PDMEEKIRECL-------KAIELLHKMAKRYVKPDEITVSI 498
           IE A + L           PD    +   L        A      M  R  +P ++ +++
Sbjct: 399 IEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTM 458

Query: 499 LEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           L   L KD    E   L    L +    SK+T
Sbjct: 459 LVCGLCKDGKHLEATELWFRLLEKGSPASKVT 490


>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
          Length = 820

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 167/363 (46%), Gaps = 38/363 (10%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P   + N L+   C+   +  A   L  ++R  + PD  T   LI G C   +   A  L
Sbjct: 127 PTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVAHDL 186

Query: 180 FTK--FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
           F K  F  F        + + YA++I+G C+ G +++   LF +M      PD + + +L
Sbjct: 187 FCKMPFRGFS------QDAVSYAALIEGFCEAGRIDEALELFREMTQ----PDMYTHAAL 236

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           ++  C A       G     L + ++      ELG    P   +Y ++++  C++   ++
Sbjct: 237 VKGLCDA-------GRGEEGLCMLQKM----KELG--WRPTTRAYAALVDLWCREQKAEE 283

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A+++  +M   G++P VV  + +++ YC  GR+  A ++F S+  +GC P+  +YN ++ 
Sbjct: 284 AEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQ 343

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFEL 404
            +    KV +A++L  +M   GV PD             +  I  A  L R +       
Sbjct: 344 GFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAA 403

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
           D   +N L+D LCK+ ++  A  LF  L   G  PN VT+  +I GLC  G  + A   L
Sbjct: 404 DQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFL 463

Query: 465 PDM 467
            +M
Sbjct: 464 ENM 466



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 110/428 (25%), Positives = 178/428 (41%), Gaps = 70/428 (16%)

Query: 74  FFNYMIHMQPTPFMPSFNSLLGAL---AGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           F +   H  P P   ++N+L+ AL   A  ++   ++ L  R    G  PD  + N L+ 
Sbjct: 116 FAHMYRHAPPAPTGATYNALIRALCRRADLRHAQRYLSLMVR---SGWRPDAFTFNSLIL 172

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
            +C+   +  A     ++  + FS D V+   LI G C  G+  EA  LF        R 
Sbjct: 173 GYCRTQQLEVAHDLFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELF--------RE 224

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
              P++  +A+++ GLC  G   +   +   MK  G  P    Y +L+ ++C     E+A
Sbjct: 225 MTQPDMYTHAALVKGLCDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEA 284

Query: 251 K----------------------------GNTSAALELHEEFVNGNGELGVICHPDVLSY 282
           +                            G  S A+ + E            C P+V +Y
Sbjct: 285 EKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKG------CEPNVWTY 338

Query: 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIES 342
            +I+   C    V KA  L   M+  G+ PDVV Y+ LI G C+ G I  A +L   +E 
Sbjct: 339 NAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEG 398

Query: 343 EGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF 402
            G   D  +YN LI++  K  KV+EA SL+  +   G+RP++                  
Sbjct: 399 NGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNS------------------ 440

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
                 FN +++GLCK+ +   A    + +   G  P+  TY+  I  LC   G ++   
Sbjct: 441 ----VTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQEGLF 496

Query: 463 LLPDMEEK 470
            + +M +K
Sbjct: 497 FIDEMLQK 504



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/403 (25%), Positives = 176/403 (43%), Gaps = 43/403 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            +++AL  F  M      P M +  +L+  L         +C+ +++  +G  P   +  
Sbjct: 214 RIDEALELFREMTQ----PDMYTHAALVKGLCDAGRGEEGLCMLQKMKELGWRPTTRAYA 269

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ +C+     +A   L  +      P VVT   ++   C +G+ + A  +F      
Sbjct: 270 ALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFK 329

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C PNV      Y +I+ G C  G V K   L   M+  G+ PD   YN LIR  C    
Sbjct: 330 GCEPNVW----TYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCI--- 382

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G+  +A  L    + GNG        D  +Y  +I++LCK   VD+A  LF  ++
Sbjct: 383 ----DGHIGSAFRLLR-LMEGNG-----LAADQYTYNVLIDALCKTGKVDEACSLFDGLE 432

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            RGI P+ V ++++I+G C  G+ D A     ++ S G  PDT +Y+  I +  K +  +
Sbjct: 433 YRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQ 492

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           E L    EM+   V+P  S +     + R  +   + L   ++  +V   C         
Sbjct: 493 EGLFFIDEMLQKDVKP--STVNYTIVINRLFNERNYGLATRIWGQMVSQGCS-------- 542

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
                       P+VVTYT  +   C EG +++A +++ +M++
Sbjct: 543 ------------PDVVTYTTSVRAYCNEGRLDEAENVVTEMKK 573



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 143/327 (43%), Gaps = 21/327 (6%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTIG 117
           N+   E  ++ A+  F  M      P + ++N+++     AGK Y    + L +++   G
Sbjct: 308 NAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKA--MALLDQMRECG 365

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           + PD V+ N+L+   C    +  AF  L  +     + D  T   LI  LC  GK  EA 
Sbjct: 366 VEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEAC 425

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            LF        RPN +     + ++I+GLCK G  +       +M   G  PD + Y+  
Sbjct: 426 SLFDGLEYRGIRPNSV----TFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPF 481

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           I   C        KG+      + E              P  ++Y  +IN L  +     
Sbjct: 482 IENLC------KTKGSQEGLFFIDEMLQKD-------VKPSTVNYTIVINRLFNERNYGL 528

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A  ++  M S+G  PDVV Y++ +  YC  GR+D+A  +   ++    I D  +YNTLI+
Sbjct: 529 ATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMAYNTLID 588

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDN 384
            ++ I + + A+++   M  +   P++
Sbjct: 589 GHTSIGQTDRAVTILKHMTGVASMPNH 615



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 110/267 (41%), Gaps = 61/267 (22%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P   +Y ++I +LC+   +  A+     M   G  PD   ++SLI GYC   +++ A  L
Sbjct: 127 PTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVAHDL 186

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS------------------- 377
           F  +   G   D  SY  LI  + +  +++EAL L+ EM                     
Sbjct: 187 FCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQPDMYTHAALVKGLCDAGRG 246

Query: 378 ------------MGVRP---------DNSCILEAAELFRTLHNTKFELDLT--VFNC--L 412
                       +G RP         D  C  + AE    + N  F+  L   V  C  +
Sbjct: 247 EEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIV 306

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIR 472
           V+  C+  R+  A  +F+ +   G EPNV TY  ++ G C  G + KA  LL    +++R
Sbjct: 307 VNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALL----DQMR 362

Query: 473 ECLKAIELLHKMAKRYVKPDEITVSIL 499
           EC              V+PD +T ++L
Sbjct: 363 EC-------------GVEPDVVTYNLL 376



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 81/415 (19%), Positives = 165/415 (39%), Gaps = 48/415 (11%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G+V  ++A   F+ + +    P   +FN+++  L     +       E + + G  PD
Sbjct: 417 KTGKV--DEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPD 474

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             + +  +   CK  G  +    +  +L+K   P  V    +I  L  +  +  A+ ++ 
Sbjct: 475 TYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWG 534

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           + V+  C P+V+     Y + +   C +G +++   +  +MK      DA  YN+LI   
Sbjct: 535 QMVSQGCSPDVV----TYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMAYNTLI--- 587

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII--------------- 286
               +   + G T  A+ + +         GV   P+  ++  ++               
Sbjct: 588 ----DGHTSIGQTDRAVTILKHMT------GVASMPNHFTFFILLRHLLQRRLAEHVPLK 637

Query: 287 -NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
             S+ K + +    ELF  MK   +      Y S+++G+    R+D+   L   ++ E  
Sbjct: 638 ATSVWKTIELADVFELFELMKKNSVPSSARTYLSILEGFSEERRLDEVTSLVSLMKEENL 697

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAE 392
             +   YN L+N + K+    +A +L   MI  G  P+                   A E
Sbjct: 698 PLNEDIYNALVNCFCKLRMYSDAWALLCSMIGHGFLPNLIFYQYLLSGLTAEGQADRAKE 757

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
           +FR+    ++  D  V+  ++DG  +        ++   L +   +P+  TY ++
Sbjct: 758 IFRSSRWKEYNTDEIVWKVIIDGFIRKGHADMCHDMISMLEQMKCKPSDETYAML 812


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 124/496 (25%), Positives = 213/496 (42%), Gaps = 70/496 (14%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           + ALC  + + H+  +P +P    LL A A  + +   + L  +L ++ +     SL+ L
Sbjct: 34  DRALCPLSVLPHLSASPSLPHL--LLTASAAARPHATSLRLYAQLKSLSVPIPVASLHPL 91

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           ++        + AF     I R        T   ++R LC  GK   A  L  +      
Sbjct: 92  LSSLPS----APAFALFADIYRLRLPLCTTTFNIMLRHLCATGKPVRALELLRQM----- 142

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG-IYPDAFVYNSLIRVYCCAVNW 247
            P   PN + Y ++I G C  G V     +  +M+ RG I PD + Y +LI  +C     
Sbjct: 143 -PR--PNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRM 199

Query: 248 EDA---------KGNTSAALELHEEFVNGN---GELGVICH-----------PDVLSYCS 284
           EDA         KG  + +  ++   + G    G+L V                V +Y  
Sbjct: 200 EDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNL 259

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           ++++L  D     A  +  +M+  G  PDV  Y+ LI+GYC  G    A ++F  +  +G
Sbjct: 260 LMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKG 319

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCI--------LEAA- 391
                 +Y +LI  +S+  +V+E   L+   +  G+RPD    N+ I        +E A 
Sbjct: 320 VRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAY 379

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
           E+   +   +   D   +N L+ G C   RL  A  L  ++ + G +P++V+Y  +I G 
Sbjct: 380 EIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGY 439

Query: 452 CIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDE 493
            ++G I+ A  +  +M +                  KIR+   A  L+ +M  + + PD+
Sbjct: 440 SMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVAKGITPDD 499

Query: 494 IT-VSILEELLNKDEN 508
            T +S++E L  +DE 
Sbjct: 500 STYISLIEGLTTEDER 515


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 102/414 (24%), Positives = 183/414 (44%), Gaps = 32/414 (7%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLL-GALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           DA+  F+ M      P   ++N+++ G + G      F  L +++   GL P+ ++ N+L
Sbjct: 214 DAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGF-SLRDQMVCHGLKPNAITYNVL 272

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           ++  C+   + +    L  +  +   PD  T   L  GL   G       LF K +    
Sbjct: 273 LSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGV 332

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
               I +  C + +++GLCKDG V+    +   +   G+ P   +YN+LI  YC     E
Sbjct: 333 ---TIGDYTC-SILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELE 388

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
            A          H               PD ++Y ++IN LCK   +  A++L ++M+  
Sbjct: 389 GAFSTFGQMKSRH-------------IKPDHITYNALINGLCKAERITNAQDLLMEMQDN 435

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G+ P V  +++LID Y   G+++    +   ++  G  P+  SY +++N++ K  K+ EA
Sbjct: 436 GVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEA 495

Query: 369 LSLYGEMISMGVRPD----NSCILEAAE---------LFRTLHNTKFELDLTVFNCLVDG 415
           +++  +M    V P+    N+ I    E         L   + +      +  +N L+ G
Sbjct: 496 VAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKG 555

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           LC   ++  A E+   L  +   P+ V+Y  +I   C  G I+KA DL   M +
Sbjct: 556 LCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHK 609



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 168/386 (43%), Gaps = 45/386 (11%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+  S N+++    +     DA      +  +   P+ +T   +I G    G       L
Sbjct: 194 PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSL 253

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             + V    +PN I     Y  ++ GLC+ G + +   L  +M  + + PD F Y+ L  
Sbjct: 254 RDQMVCHGLKPNAI----TYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILF- 308

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII-NSLCKDVLVDKA 298
                 +     G++ A L L  + +     +G          CSI+ N LCKD  V  A
Sbjct: 309 ------DGLSRNGDSKAMLSLFGKSLKNGVTIGDYT-------CSILLNGLCKDGKVSIA 355

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
           +E+   + + G++P  V+Y++LI+GYC  G ++ A   F  ++S    PD  +YN LIN 
Sbjct: 356 EEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALING 415

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
             K E++  A  L  EM   GV P                       +  FN L+D   +
Sbjct: 416 LCKAERITNAQDLLMEMQDNGVNP----------------------TVETFNTLIDAYGR 453

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAI 478
           + +L   + +  ++   G +PNVV+Y  ++   C  G I +A  +L DM  K  + L   
Sbjct: 454 TGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHK--DVLPNA 511

Query: 479 ELLHKMAKRYVK--PDEITVSILEEL 502
           ++ + +   YV+  P++    ++E++
Sbjct: 512 QVYNAIIDAYVEHGPNDQAFILVEKM 537



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 158/364 (43%), Gaps = 47/364 (12%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           + L   GL+P  V  N L+N +C+   +  AF   G++  +   PD +T   LI GLC  
Sbjct: 360 QSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKA 419

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
            + T A  L  +         V P V  + ++ID   + G + K  ++  +M+  G+ P+
Sbjct: 420 ERITNAQDLLMEMQ----DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPN 475

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS----YCSII 286
              Y S++  +C         G    A+ + ++            H DVL     Y +II
Sbjct: 476 VVSYGSIVNAFC-------KNGKIPEAVAILDDMF----------HKDVLPNAQVYNAII 518

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           ++  +    D+A  L   MKS GI P +V Y+ LI G C   +I +A ++  S+ +   I
Sbjct: 519 DAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLI 578

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406
           PD  SYNTLI++      +++AL L   M   G++             RT H        
Sbjct: 579 PDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIK----------STVRTYHQ------- 621

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
                L+ GL  + RL     L++K+ +    P+   + +M+      G   KA DL  +
Sbjct: 622 -----LISGLGGAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKE 676

Query: 467 MEEK 470
           M +K
Sbjct: 677 MLQK 680



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 130/311 (41%), Gaps = 17/311 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           EL  A   F  M      P   ++N+L+  L   +   N   L   +   G+ P   + N
Sbjct: 386 ELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFN 445

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ + +   +   F+ L  +      P+VV+ G ++   C  GK  EA  +       
Sbjct: 446 TLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHK 505

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           D    V+PN   Y +IID   + G  ++  +L   MK  GI P    YN LI+  C    
Sbjct: 506 D----VLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQ 561

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
             +A           EE +N      +I  PD +SY ++I++ C    +DKA +L   M 
Sbjct: 562 ISEA-----------EEIINSLSNHRLI--PDAVSYNTLISACCYRGNIDKALDLQQRMH 608

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
             GI   V  Y  LI G    GR+ +   L+  +     +P  + +N ++ +YSK     
Sbjct: 609 KYGIKSTVRTYHQLISGLGGAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEI 668

Query: 367 EALSLYGEMIS 377
           +A  L  EM+ 
Sbjct: 669 KAEDLRKEMLQ 679



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 103/239 (43%), Gaps = 33/239 (13%)

Query: 294 LVDKAKELFLDM--KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
           L D A  L  D+  ++R  +P +   + L++    +GR  D R+ F  + S G  PDT +
Sbjct: 103 LPDGALRLLSDLADEARAPLPSLSSCNLLLEALLSLGRHADVRRAFGILASAGARPDTFA 162

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL--------------EAAELFRTL 397
           +N  + +      + EA+ +   M   G  P N+                 +A E+F  +
Sbjct: 163 WNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEM 222

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                  +   +N ++DG  K   L + + L  ++  +G +PN +TY V++ GLC  G +
Sbjct: 223 TERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRAGRM 282

Query: 458 EKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
            +                    LL +MA + + PD  T SIL + L+++ +    ++L 
Sbjct: 283 GETS-----------------ALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLF 324


>gi|449511130|ref|XP_004163870.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 847

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 180/369 (48%), Gaps = 37/369 (10%)

Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN 213
           +P+VVT  CLI+G C   +  +A  L  +  +  C P+ +     Y +++  LC+D  +N
Sbjct: 348 APNVVTYNCLIKGYCNVHQVDQAMELIDQMPSKGCSPDKVS----YYTVMGLLCRDKRLN 403

Query: 214 KVRVLFLDMKGRG-IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
           ++R L   M+    + PD   YNSLI++           G+   ALE+ +E      ++ 
Sbjct: 404 EIRELIKKMQTDSKLLPDHVTYNSLIQML-------SKHGHGDEALEILQEAEKLRFKV- 455

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
                D + Y +I+++ CK+  + KAKEL  +M S+G  PDVV Y+S++DG+C +G++D 
Sbjct: 456 -----DKVEYSAIVHAYCKEGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQ 510

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG--------------EMISM 378
           A+K+   +    C P+  +Y T +N   +  K  EA  +                 ++  
Sbjct: 511 AKKMMQQMYKHHCKPNAVTYTTFLNGLCRNGKSLEARKMMNMSEEEWWTPNAITYSVVVH 570

Query: 379 GVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
           G+R +   + EA ++ R +    F  +    N LV  LC+  + R A +L K+    G  
Sbjct: 571 GLRREGK-LNEACDVVREMIGKGFFPNPVEINLLVHSLCRDGKPREANQLLKECMNKGCA 629

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDME--EKIRECLKAIELLHKMAK--RYVKPDEI 494
            NVV +T +I G C +  +E A  LL DM    K  + +    L+  +AK  R  +  E+
Sbjct: 630 VNVVNFTTVIHGFCQKDDLEAALSLLDDMYLCNKHPDTVTYTALIDALAKTDRIEEATEL 689

Query: 495 TVSILEELL 503
           T+ +L + L
Sbjct: 690 TMKMLRQGL 698



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 95/436 (21%), Positives = 181/436 (41%), Gaps = 70/436 (16%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P   ++NSL+  L+   +    + + +    +    D V  + +++ +CK   +  A   
Sbjct: 420 PDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYSAIVHAYCKEGKIQKAKEL 479

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI----------- 193
           +  +  K   PDVVT   ++ G C  GK  +A  +  +     C+PN +           
Sbjct: 480 VSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHHCKPNAVTYTTFLNGLCR 539

Query: 194 --------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233
                               PN I Y+ ++ GL ++G +N+   +  +M G+G +P+   
Sbjct: 540 NGKSLEARKMMNMSEEEWWTPNAITYSVVVHGLRREGKLNEACDVVREMIGKGFFPNPVE 599

Query: 234 YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDV 293
            N L+   C         G    A +L +E +N        C  +V+++ ++I+  C+  
Sbjct: 600 INLLVHSLC-------RDGKPREANQLLKECMNKG------CAVNVVNFTTVIHGFCQKD 646

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353
            ++ A  L  DM      PD V Y++LID      RI++A +L + +  +G +P   +Y 
Sbjct: 647 DLEAALSLLDDMYLCNKHPDTVTYTALIDALAKTDRIEEATELTMKMLRQGLVPSPVTYR 706

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLV 413
           ++I+ Y +  +VE+ L L  +M+                       ++F+   T +N ++
Sbjct: 707 SVIHQYCRKGRVEDLLKLLKKMLLK---------------------SRFQ---TAYNLVI 742

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
           + LCK   L  A  L  ++ R     +  T  V++      G    AY +   M    R 
Sbjct: 743 EKLCKFGYLEEANSLLGEVLRTASRTDAKTCHVLMESYLNVGIPMSAYKVACRMFN--RN 800

Query: 474 CLKAIELLHKMAKRYV 489
            +  ++L  K++KR V
Sbjct: 801 LIPDLKLCEKVSKRLV 816



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 104/238 (43%), Gaps = 33/238 (13%)

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353
           L D  K L L M+  G+ P++ + ++ I    +   +  A +    +   G  P+  +YN
Sbjct: 297 LRDAMKVLTL-MQKAGVEPNLSICNTAIHILVMGNELKKALRFAERMVLIGIAPNVVTYN 355

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLH-N 399
            LI  Y  + +V++A+ L  +M S G  PD             +  + E  EL + +  +
Sbjct: 356 CLIKGYCNVHQVDQAMELIDQMPSKGCSPDKVSYYTVMGLLCRDKRLNEIRELIKKMQTD 415

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
           +K   D   +N L+  L K      A E+ ++  +   + + V Y+ ++   C EG I+K
Sbjct: 416 SKLLPDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYSAIVHAYCKEGKIQK 475

Query: 460 AYDLLPDMEEK------------------IRECLKAIELLHKMAKRYVKPDEITVSIL 499
           A +L+ +M  K                  I +  +A +++ +M K + KP+ +T +  
Sbjct: 476 AKELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHHCKPNAVTYTTF 533



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 84/192 (43%), Gaps = 36/192 (18%)

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL------ 404
           ++  ++ SYS+  ++ +A+ +   M   GV P+ S    A  +    +  K  L      
Sbjct: 283 AFGFVMVSYSRAGRLRDAMKVLTLMQKAGVEPNLSICNTAIHILVMGNELKKALRFAERM 342

Query: 405 -------DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                  ++  +NCL+ G C   ++  A EL  ++P  G  P+ V+Y  ++  LC +  +
Sbjct: 343 VLIGIAPNVVTYNCLIKGYCNVHQVDQAMELIDQMPSKGCSPDKVSYYTVMGLLCRDKRL 402

Query: 458 EKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLP 517
                       +IRE +K ++   K+      PD +T + L ++L+K  +  E + +L 
Sbjct: 403 -----------NEIRELIKKMQTDSKLL-----PDHVTYNSLIQMLSKHGHGDEALEIL- 445

Query: 518 SFLSRNQEESKL 529
                 QE  KL
Sbjct: 446 ------QEAEKL 451


>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 806

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 101/435 (23%), Positives = 199/435 (45%), Gaps = 48/435 (11%)

Query: 79  IHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGV 138
           + M+  P +P +N+L+  +  +  +     L   +   G+ P+ +S + +++C   M  V
Sbjct: 236 LAMKFEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMGNV 295

Query: 139 SDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVIC 198
             +    GR+  +   P+V T   LI+G  ++G+  +A GL+   +    R  V PNV+ 
Sbjct: 296 ELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLWNLMI----REGVSPNVVA 351

Query: 199 YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL 258
           Y ++I GLC DG +++   ++  M+   I P+   Y+++I  +          G+  +A 
Sbjct: 352 YNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIYGFA-------KSGDLVSAC 404

Query: 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS 318
           E   + +N        C P+V+ Y  +++ LC+  + D+A +L  +M S G  P V+ ++
Sbjct: 405 ETWNKMINCG------CRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFN 458

Query: 319 SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
           + I G C  GR++ A  +   +E   C+P+  +YN L++   +     EA  L  E+   
Sbjct: 459 NFIKGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGLFRANAFREACGLIRELEER 518

Query: 379 GVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
            V  D             N    +  +L   +     +LD    N  V+  CK  ++++A
Sbjct: 519 KVEFDCVTYNTIMYGFSFNGMHQQVLQLLGKMLVNGIKLDTITVNTTVNAYCKLGKVKTA 578

Query: 426 WELFKKLPRYGP-EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKM 484
            ++   +        +++T+T+++ G+C   G E                 +A+  LH+M
Sbjct: 579 IKVLDNISAEKEFRADIITHTIILWGICNWLGTE-----------------EAVVYLHEM 621

Query: 485 AKRYVKPDEITVSIL 499
            KR + P+  T ++L
Sbjct: 622 LKRGIFPNIATWNVL 636



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/401 (26%), Positives = 180/401 (44%), Gaps = 48/401 (11%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P +  +N +L AL  +  +     L   + + GL P+  + N+L+   C+   V  A   
Sbjct: 142 PSVKIYNLVLDALLSQNLFKMINALYNNMKSEGLEPNVFTYNVLLKALCQNGKVDGACKL 201

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           L  +  K   PD V+   +I  +C  G   +A  L  KF          P V  Y ++I 
Sbjct: 202 LVEMSNKGCDPDDVSYTTVISSMCKLGDVDKARELAMKFE---------PVVPVYNALIH 252

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE- 263
           G+CK+    +   L  +M  RG+ P+   Y+++I   C +       GN   +L +    
Sbjct: 253 GVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVIS--CLS-----DMGNVELSLAVFGRM 305

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
           FV G       C P+V ++ S+I        V  A  L+  M   G+ P+VV Y++LI G
Sbjct: 306 FVRG-------CRPNVQTFTSLIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHG 358

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            C  G +D+A  ++  +E +   P+ ++Y+T+I  ++K   +  A   + +MI+ G RP 
Sbjct: 359 LCSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRP- 417

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                                ++ V+ C+VD LC+      A++L   +   G  P V+T
Sbjct: 418 ---------------------NVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVIT 456

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKM 484
           +   I GLC  G +E A ++L  ME+   ECL  I   +++
Sbjct: 457 FNNFIKGLCRAGRVEWAMNVLDQMEK--YECLPNIRTYNEL 495



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 102/214 (47%), Gaps = 29/214 (13%)

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
           C P V  Y  ++++L    L      L+ +MKS G+ P+V  Y+ L+   C  G++D A 
Sbjct: 140 CEPSVKIYNLVLDALLSQNLFKMINALYNNMKSEGLEPNVFTYNVLLKALCQNGKVDGAC 199

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
           KL V + ++GC PD  SY T+I+S  K+  V++A  L                       
Sbjct: 200 KLLVEMSNKGCDPDDVSYTTVISSMCKLGDVDKARELA---------------------- 237

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
                 KFE  + V+N L+ G+CK  R + A++L  ++   G +PNV++Y+ +I  L   
Sbjct: 238 -----MKFEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLSDM 292

Query: 455 GGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRY 488
           G +E +  +   M   +R C   ++    + K +
Sbjct: 293 GNVELSLAVFGRM--FVRGCRPNVQTFTSLIKGF 324



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 101/233 (43%), Gaps = 35/233 (15%)

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           L+Y ++I+ L ++  +D    L   MK   +     ++  +I  Y      +   K+F  
Sbjct: 75  LTYETMIDKLGRNNEMDGVSYLLQQMKLENVPCSQELFQFVIKCYRRSNLGEQGLKMFYR 134

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN 399
           I   GC P    YN ++++       +   +LY  M S G+ P                 
Sbjct: 135 IREFGCEPSVKIYNLVLDALLSQNLFKMINALYNNMKSEGLEP----------------- 177

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
                ++  +N L+  LC++ ++  A +L  ++   G +P+ V+YT +I  +C  G ++K
Sbjct: 178 -----NVFTYNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISSMCKLGDVDK 232

Query: 460 AYDLLPDMEEKI-----------RECL--KAIELLHKMAKRYVKPDEITVSIL 499
           A +L    E  +           +EC   +A +L+++M  R V P+ I+ S +
Sbjct: 233 ARELAMKFEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTV 285


>gi|357455187|ref|XP_003597874.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359582|gb|ABD28711.2| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486922|gb|AES68125.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 822

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 106/403 (26%), Positives = 183/403 (45%), Gaps = 49/403 (12%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFIC----LSERLNTIG 117
           K+G+ ++ D L   N M  M     +  FNS++ A    KY    +     +   +  +G
Sbjct: 287 KAGKFQVVDQL--LNEMNVMGLNVNVKVFNSIIDA----KYKYGLVDKAAEMMRMMTEMG 340

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
             PD  + NIL+N  C    + +A   L R   +   P+  +   L+   C QG +  AS
Sbjct: 341 CEPDITTYNILINFSCSGGRIKEAEEFLERAKERTLLPNKFSYTPLMHAYCKQGDYVMAS 400

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            +  K      +P+++     Y + I G    G ++   ++   M  +G++PDA +YN L
Sbjct: 401 DMLFKIAETGDKPDLVS----YGAFIHGSVAGGEIDVALMVREKMMEKGVFPDAQIYNVL 456

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           +   C        KG   AA  L  E ++ N        PD   Y ++++   ++  +DK
Sbjct: 457 MSGLC-------KKGRFPAAKLLLSEMLDLN------LQPDAYMYATLVDGFIRNNELDK 503

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A ELF  + S+GI P VV Y+ +I G C  G++ DA      ++     PD  +++T+I+
Sbjct: 504 ATELFEVVMSKGIDPGVVGYNVMIKGLCKCGKMTDAVSYVNKMKIANHAPDEYTHSTVID 563

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
            Y K   ++ AL ++G+M+    +P                      ++  +  L++G C
Sbjct: 564 GYVKQHDLDSALKMFGQMMKQKYKP----------------------NVVAYTSLINGFC 601

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
           K   +  A ++F+ +  +  EPNVVTYT++I G    G  EKA
Sbjct: 602 KIADMSRAEKVFRAMQSFNLEPNVVTYTILIGGFSKTGKPEKA 644



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 101/352 (28%), Positives = 150/352 (42%), Gaps = 39/352 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G +P+ V  N++++ +CK   +  A      +  K F P + T G LI G C  GKF   
Sbjct: 235 GCVPNVVFYNVIIDGYCKKGDLKRATRVFEELKLKGFLPTLETYGALIDGFCKAGKFQVV 294

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L  +        NV  NV  + SIID   K G V+K   +   M   G  PD   YN 
Sbjct: 295 DQLLNEMNVMGL--NV--NVKVFNSIIDAKYKYGLVDKAAEMMRMMTEMGCEPDITTYNI 350

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI   C     ++A           EEF+    E  ++  P+  SY  ++++ CK     
Sbjct: 351 LINFSCSGGRIKEA-----------EEFLERAKERTLL--PNKFSYTPLMHAYCKQGDYV 397

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A ++   +   G  PD+V Y + I G    G ID A  +   +  +G  PD   YN L+
Sbjct: 398 MASDMLFKIAETGDKPDLVSYGAFIHGSVAGGEIDVALMVREKMMEKGVFPDAQIYNVLM 457

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
           +   K  +   A  L  EM+ + ++PD       A ++ TL               VDG 
Sbjct: 458 SGLCKKGRFPAAKLLLSEMLDLNLQPD-------AYMYATL---------------VDGF 495

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
            ++  L  A ELF+ +   G +P VV Y VMI GLC  G +  A   +  M+
Sbjct: 496 IRNNELDKATELFEVVMSKGIDPGVVGYNVMIKGLCKCGKMTDAVSYVNKMK 547



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 96/399 (24%), Positives = 177/399 (44%), Gaps = 46/399 (11%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142
           P  F  S+  L+ A   +  YV    +  ++   G  PD VS    ++       +  A 
Sbjct: 378 PNKF--SYTPLMHAYCKQGDYVMASDMLFKIAETGDKPDLVSYGAFIHGSVAGGEIDVAL 435

Query: 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202
           +   +++ K   PD      L+ GLC +G+F  A  L ++ +      N+ P+   YA++
Sbjct: 436 MVREKMMEKGVFPDAQIYNVLMSGLCKKGRFPAAKLLLSEMLDL----NLQPDAYMYATL 491

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
           +DG  ++  ++K   LF  +  +GI P    YN +I+  C      DA            
Sbjct: 492 VDGFIRNNELDKATELFEVVMSKGIDPGVVGYNVMIKGLCKCGKMTDAV----------- 540

Query: 263 EFVNGNGELGVICH-PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
            +VN   ++ +  H PD  ++ ++I+   K   +D A ++F  M  +   P+VV Y+SLI
Sbjct: 541 SYVN---KMKIANHAPDEYTHSTVIDGYVKQHDLDSALKMFGQMMKQKYKPNVVAYTSLI 597

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
           +G+C +  +  A K+F +++S    P+  +Y  LI  +SK  K E+A S +  M+     
Sbjct: 598 NGFCKIADMSRAEKVFRAMQSFNLEPNVVTYTILIGGFSKTGKPEKAASFFELMLMNNCL 657

Query: 382 PDNSC----------------ILEAAE---------LFRTLHNTKFELDLTVFNCLVDGL 416
           P+++                 ++E  E          F T+ +  +   +  +N ++  L
Sbjct: 658 PNDTTFHYLINGLTNITNTTLLIEKNEENDRSLILDFFATMISEGWSQVIATYNSIIVCL 717

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
           CK   + +A  L  K+ R G   + V ++ ++ GLC  G
Sbjct: 718 CKHGMVDTAQLLQTKMLRKGFLMDSVCFSALLHGLCQTG 756



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 138/317 (43%), Gaps = 42/317 (13%)

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC------------ 242
           N + Y+S++  + K    +++ ++  DMK R   P     NS+I VY             
Sbjct: 92  NNVAYSSLLKLMVKYRLFSEIEIVLEDMKNRNFKPTLEALNSVICVYAEYGFVDKAVKMF 151

Query: 243 -----------CAV------NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSI 285
                      C V      N     G    A EL+++ +   G+ G+    D  S   +
Sbjct: 152 YMVCELYNCFPCVVANNSLLNCLVKNGKVDVACELYDKMLERGGDHGLDLVVDNYSIVIV 211

Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
           +  LC    V++ ++L  D    G +P+VV Y+ +IDGYC  G +  A ++F  ++ +G 
Sbjct: 212 VKGLCDVGKVEEGRKLIDDRWGNGCVPNVVFYNVIIDGYCKKGDLKRATRVFEELKLKGF 271

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG----VRPDNSCI---------LEAAE 392
           +P   +Y  LI+ + K  K +    L  EM  MG    V+  NS I          +AAE
Sbjct: 272 LPTLETYGALIDGFCKAGKFQVVDQLLNEMNVMGLNVNVKVFNSIIDAKYKYGLVDKAAE 331

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
           + R +     E D+T +N L++  C   R++ A E  ++       PN  +YT ++   C
Sbjct: 332 MMRMMTEMGCEPDITTYNILINFSCSGGRIKEAEEFLERAKERTLLPNKFSYTPLMHAYC 391

Query: 453 IEGGIEKAYDLLPDMEE 469
            +G    A D+L  + E
Sbjct: 392 KQGDYVMASDMLFKIAE 408



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 116/275 (42%), Gaps = 15/275 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           EL+ A   F  ++     P +  +N ++  L       + +    ++      PD  + +
Sbjct: 500 ELDKATELFEVVMSKGIDPGVVGYNVMIKGLCKCGKMTDAVSYVNKMKIANHAPDEYTHS 559

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            +++ + K   +  A    G+++++ + P+VV    LI G C     + A  +F    +F
Sbjct: 560 TVIDGYVKQHDLDSALKMFGQMMKQKYKPNVVAYTSLINGFCKIADMSRAEKVFRAMQSF 619

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
               N+ PNV+ Y  +I G  K G   K    F  M      P+   ++ LI       N
Sbjct: 620 ----NLEPNVVTYTILIGGFSKTGKPEKAASFFELMLMNNCLPNDTTFHYLINGLTNITN 675

Query: 247 W-----EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
                 ++ + + S  L+     ++  G   VI      +Y SII  LCK  +VD A+ L
Sbjct: 676 TTLLIEKNEENDRSLILDFFATMIS-EGWSQVIA-----TYNSIIVCLCKHGMVDTAQLL 729

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
              M  +G + D V +S+L+ G C  G+  + R +
Sbjct: 730 QTKMLRKGFLMDSVCFSALLHGLCQTGKSKEWRNI 764



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 113/258 (43%), Gaps = 38/258 (14%)

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           ++Y S++  + K  L  + + +  DMK+R   P +   +S+I  Y   G +D A K+F  
Sbjct: 94  VAYSSLLKLMVKYRLFSEIEIVLEDMKNRNFKPTLEALNSVICVYAEYGFVDKAVKMFYM 153

Query: 340 I-ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG------VRPDNS------- 385
           + E   C P   + N+L+N   K  KV+ A  LY +M+  G      +  DN        
Sbjct: 154 VCELYNCFPCVVANNSLLNCLVKNGKVDVACELYDKMLERGGDHGLDLVVDNYSIVIVVK 213

Query: 386 --CILEAAELFRTLHNTKFE----LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
             C +   E  R L + ++      ++  +N ++DG CK   L+ A  +F++L   G  P
Sbjct: 214 GLCDVGKVEEGRKLIDDRWGNGCVPNVVFYNVIIDGYCKKGDLKRATRVFEELKLKGFLP 273

Query: 440 NVVTYTVMICGLCIEGGIE------------------KAYDLLPDMEEKIRECLKAIELL 481
            + TY  +I G C  G  +                  K ++ + D + K     KA E++
Sbjct: 274 TLETYGALIDGFCKAGKFQVVDQLLNEMNVMGLNVNVKVFNSIIDAKYKYGLVDKAAEMM 333

Query: 482 HKMAKRYVKPDEITVSIL 499
             M +   +PD  T +IL
Sbjct: 334 RMMTEMGCEPDITTYNIL 351


>gi|413934035|gb|AFW68586.1| hypothetical protein ZEAMMB73_127077 [Zea mays]
          Length = 800

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 135/504 (26%), Positives = 213/504 (42%), Gaps = 86/504 (17%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           +  G V L  AL  +N M+     P   ++N L+  L  +   V+ + L + + + G+ P
Sbjct: 187 ASGGAVPL--ALALYNRMVAAGCLPNRATYNVLIHGLCKRGTPVDALKLFDEMISRGITP 244

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA---- 176
           +  +  IL++  C    + +A   L  +  K   PD VT    + GLC  G+  EA    
Sbjct: 245 NVKTHTILLSSMCNAGQLKEAENLLHSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAIERL 304

Query: 177 -----SGLFTK------------FVA------FDC------RPNVIPNVICYASIIDGLC 207
                +G F              F+A      F C      + +V P+++ Y  +I G  
Sbjct: 305 EALRHTGTFVLGLKGYSCLIDGLFLAGRYEEGFQCYMEVLEQADVSPDIVLYTIMIRGCA 364

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
           + G  N     F +MK +G  PD F YN+L++  C A       G+   A  L  E V  
Sbjct: 365 EAGRTNDAFAFFDEMKEKGFTPDTFCYNTLLKALCDA-------GDLDGARSLMSEMVRN 417

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
           N  L      D+ +Y ++I  LCK+ LVD+A ++F  M   G  P V+ Y+ LIDG    
Sbjct: 418 NVVL------DIHTYTTMIIGLCKEQLVDEAMQVFDGMVEVGCHPSVMTYNVLIDGLYRA 471

Query: 328 GRIDDARKLFVSIE-------------SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
            R+++AR LF  +E                 + D+ +   L+ S  +  +V +A  L   
Sbjct: 472 HRLEEARMLFYKMEVGNNPSLFLRLTLGANQVRDSETLQKLVESMCQSGQVLKAYKLLRG 531

Query: 375 MISMGVRPD----NSCI--------LEAA-ELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
           +I  GV PD    N+ +        L+ A  LFR L    F LD   +  L+D L ++ R
Sbjct: 532 IIDSGVVPDVVTYNTLLNGLCKVRNLDGALRLFRELQVKGFPLDEITYGTLIDSLLRAHR 591

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLC----IEGGIEKAYDLLPD------MEEKI 471
              A  LF+ +   G  P++  Y  M+  LC    +   I   +D LP        +E I
Sbjct: 592 YNDALTLFQDILHSGGTPSMPIYNSMMRSLCRMQKLSQAINLWFDHLPRKYNLLAQDEVI 651

Query: 472 RECLKAIE--LLHKMAKRYVKPDE 493
               K  E   LH+  +  +K D+
Sbjct: 652 SSARKKFEEGCLHEAVRELIKIDQ 675



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 132/299 (44%), Gaps = 35/299 (11%)

Query: 174 TEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR-GIYPDAF 232
           T+A       +A      + P    + ++I      G  ++    F  M+G  G  P  F
Sbjct: 117 TDADAAMYDAIADAQAAGLQPPTAAFEALIFAHASAGRHHEAVEAFSRMEGEFGCRPTTF 176

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
           VYN+++RV   +       G    AL L+   V         C P+  +Y  +I+ LCK 
Sbjct: 177 VYNAVLRVLVAS------GGAVPLALALYNRMVAAG------CLPNRATYNVLIHGLCKR 224

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
                A +LF +M SRGI P+V  ++ L+   C  G++ +A  L  S+E +GC PD  +Y
Sbjct: 225 GTPVDALKLFDEMISRGITPNVKTHTILLSSMCNAGQLKEAENLLHSMEDKGCPPDEVTY 284

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCL 412
           N  ++   K  +V+EA                   +E  E  R  H   F L L  ++CL
Sbjct: 285 NAFLSGLCKAGRVDEA-------------------IERLEALR--HTGTFVLGLKGYSCL 323

Query: 413 VDGLCKSWRLRSAWELFKK-LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           +DGL  + R    ++ + + L +    P++V YT+MI G    G    A+    +M+EK
Sbjct: 324 IDGLFLAGRYEEGFQCYMEVLEQADVSPDIVLYTIMIRGCAEAGRTNDAFAFFDEMKEK 382



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 89/419 (21%), Positives = 154/419 (36%), Gaps = 71/419 (16%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           NDA  FF+ M     TP    +N+LL AL           L   +    ++ D  +   +
Sbjct: 370 NDAFAFFDEMKEKGFTPDTFCYNTLLKALCDAGDLDGARSLMSEMVRNNVVLDIHTYTTM 429

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK------ 182
           +   CK   V +A      ++     P V+T   LI GL    +  EA  LF K      
Sbjct: 430 IIGLCKEQLVDEAMQVFDGMVEVGCHPSVMTYNVLIDGLYRAHRLEEARMLFYKMEVGNN 489

Query: 183 ---FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
              F+      N + +      +++ +C+ G V K   L   +   G+ PD   YN+L+ 
Sbjct: 490 PSLFLRLTLGANQVRDSETLQKLVESMCQSGQVLKAYKLLRGIIDSGVVPDVVTYNTLLN 549

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C   N                                                +D A 
Sbjct: 550 GLCKVRN------------------------------------------------LDGAL 561

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
            LF +++ +G   D + Y +LID      R +DA  LF  I   G  P    YN+++ S 
Sbjct: 562 RLFRELQVKGFPLDEITYGTLIDSLLRAHRYNDALTLFQDILHSGGTPSMPIYNSMMRSL 621

Query: 360 SKIEKVEEALSLY-------------GEMISMGVRP-DNSCILEAAELFRTLHNTKFELD 405
            +++K+ +A++L+              E+IS   +  +  C+ EA      +      ++
Sbjct: 622 CRMQKLSQAINLWFDHLPRKYNLLAQDEVISSARKKFEEGCLHEAVRELIKIDQEYGSVN 681

Query: 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
              +   + GL ++ R+  A ++F  L   G +        +   LC+EG +  A D++
Sbjct: 682 SCPYTIWLIGLIQAGRIEDALKIFHILEESGIDITPACCVHLSKYLCLEGNLGAAVDVM 740


>gi|297727717|ref|NP_001176222.1| Os10g0495400 [Oryza sativa Japonica Group]
 gi|255679525|dbj|BAH94950.1| Os10g0495400, partial [Oryza sativa Japonica Group]
          Length = 438

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 104/392 (26%), Positives = 178/392 (45%), Gaps = 38/392 (9%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIG---LLPDFVSLNILMNCFCKMIGVSDAFVAL 145
           SFN  L  +A +      + L  R+   G   + PD  + +IL+ C C+   +   F AL
Sbjct: 60  SFNRTLTDVA-RDSPAAAVSLFNRMARAGADEVTPDLCTYSILIGCCCRAGRLDLGFAAL 118

Query: 146 GRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL-FTKFVAFDCRPNVIPNVICYASIID 204
           G +++K F  + +T   L++GLC   + ++A  +   +     C P+V    I    ++ 
Sbjct: 119 GNVIKKGFRVEAITFAPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTI----LLK 174

Query: 205 GLCKDGFVNKVRVLF---LDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261
           GLC +    +   L     D +G G  PD   Y ++I       N    +G++  A   +
Sbjct: 175 GLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVI-------NGFFKEGDSDKAYSTY 227

Query: 262 EEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
            E ++          P+V++Y SII +LCK   +DKA E+   M   G++PD + Y+S++
Sbjct: 228 HEMLDRR------ISPNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSIL 281

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
            GYC  G+  +A      + S+G  P+  +Y +L+N   K  +  EA  ++  M   G+ 
Sbjct: 282 HGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYRSLMNYLCKNGRCTEARKIFDSMTKRGLE 341

Query: 382 PD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
           PD                ++E   L   +     + D  VFN L+    K  ++  A  +
Sbjct: 342 PDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLV 401

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
           F K+ ++G  PNVV Y  +I  LC  G ++ A
Sbjct: 402 FSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDA 433



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 105/220 (47%), Gaps = 21/220 (9%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ V+ + ++   CK   +  A   L  +++    PD +T   ++ G C  G+  EA G 
Sbjct: 237 PNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGT 296

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             K  +      V PNV+ Y S+++ LCK+G   + R +F  M  RG+ PD   Y +L++
Sbjct: 297 LKKMRS----DGVEPNVVTYRSLMNYLCKNGRCTEARKIFDSMTKRGLEPDIATYRTLLQ 352

Query: 240 VYCCAVNWEDAKGNTSAALELHE--EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
            Y         KG   A +E+H   + +  NG       PD   +  +I +  K   VD+
Sbjct: 353 GYA-------TKG---ALVEMHALLDLMVRNG-----IQPDHHVFNILICAYAKQEKVDQ 397

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           A  +F  M+  G+ P+VV Y ++ID  C  G +DDA   F
Sbjct: 398 AMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYF 437



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 133/311 (42%), Gaps = 54/311 (17%)

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
           V P++  Y+ +I   C+ G ++       ++  +G   +A  +  L++  C       A 
Sbjct: 91  VTPDLCTYSILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFAPLLKGLC-------AD 143

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF---LDMKSR 308
             TS A+++    +    EL   C PDV S   ++  LC +    +A EL     D +  
Sbjct: 144 KRTSDAMDI---VLRRMTELS--CMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGG 198

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G  PDVV Y+++I+G+   G  D A   +  +      P+  +Y+++I +  K + +++A
Sbjct: 199 GSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPNVVTYSSIIAALCKAQAMDKA 258

Query: 369 LSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
           + +   M+  GV PD  C+                     +N ++ G C S + + A   
Sbjct: 259 MEVLNTMVKNGVMPD--CM--------------------TYNSILHGYCSSGQPKEAIGT 296

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRY 488
            KK+   G EPNVVTY  ++  LC  G                  C +A ++   M KR 
Sbjct: 297 LKKMRSDGVEPNVVTYRSLMNYLCKNG-----------------RCTEARKIFDSMTKRG 339

Query: 489 VKPDEITVSIL 499
           ++PD  T   L
Sbjct: 340 LEPDIATYRTL 350



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 111/260 (42%), Gaps = 22/260 (8%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  PD VS   ++N F K      A+     +L +  SP+VVT   +I  LC      +A
Sbjct: 199 GSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPNVVTYSSIIAALCKAQAMDKA 258

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             +    V    +  V+P+ + Y SI+ G C  G   +       M+  G+ P+   Y S
Sbjct: 259 MEVLNTMV----KNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYRS 314

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC-KDVLV 295
           L+   C         G  + A ++ +       E      PD+ +Y +++     K  LV
Sbjct: 315 LMNYLC-------KNGRCTEARKIFDSMTKRGLE------PDIATYRTLLQGYATKGALV 361

Query: 296 DKAKELFLDMKSR-GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
           +      LD+  R GI PD  V++ LI  Y    ++D A  +F  +   G  P+   Y T
Sbjct: 362 E--MHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGT 419

Query: 355 LINSYSKIEKVEEALSLYGE 374
           +I+   K   V++A+ LY E
Sbjct: 420 VIDVLCKSGSVDDAM-LYFE 438



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 101/252 (40%), Gaps = 43/252 (17%)

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLD-MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           + +++  ++  LC D     A ++ L  M     +PDV   + L+ G C   R  +A +L
Sbjct: 129 EAITFAPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALEL 188

Query: 337 FVSIESE---GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAEL 393
              +  +   G  PD  SY T+IN + K    ++A S Y EM+   + P+          
Sbjct: 189 LHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPN---------- 238

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
                       +  ++ ++  LCK+  +  A E+   + + G  P+ +TY  ++ G C 
Sbjct: 239 ------------VVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCS 286

Query: 454 EGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECM 513
            G                 +  +AI  L KM    V+P+ +T   L   L K+  C E  
Sbjct: 287 SG-----------------QPKEAIGTLKKMRSDGVEPNVVTYRSLMNYLCKNGRCTEAR 329

Query: 514 NLLPSFLSRNQE 525
            +  S   R  E
Sbjct: 330 KIFDSMTKRGLE 341



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 4/183 (2%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A+   N M+     P   ++NS+L            I   +++ + G+ P+ V+   
Sbjct: 255 MDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYRS 314

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           LMN  CK    ++A      + ++   PD+ T   L++G   +G   E   L    V   
Sbjct: 315 LMNYLCKNGRCTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMV--- 371

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
            R  + P+   +  +I    K   V++  ++F  M+  G+ P+   Y ++I V C + + 
Sbjct: 372 -RNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSV 430

Query: 248 EDA 250
           +DA
Sbjct: 431 DDA 433



 Score = 45.8 bits (107), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 5/124 (4%)

Query: 53  LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSER 112
           L+ YL +N +  E     A   F+ M      P + ++ +LL   A K   V    L + 
Sbjct: 315 LMNYLCKNGRCTE-----ARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDL 369

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +   G+ PD    NIL+  + K   V  A +   ++ +   +P+VV  G +I  LC  G 
Sbjct: 370 MVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGS 429

Query: 173 FTEA 176
             +A
Sbjct: 430 VDDA 433


>gi|358347154|ref|XP_003637626.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503561|gb|AES84764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 989

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 131/531 (24%), Positives = 227/531 (42%), Gaps = 86/531 (16%)

Query: 8   TSRTAFKVKPSSSLRNSKKPISLNSENEPSSLHSNSVSTVEEKTKLLK---------YLS 58
           T+   F   P + LR    P  + +    S +H +S+     KT L           YL+
Sbjct: 13  TNTLIFFFSPPTRLRRFFYPTPI-TRTFSSQIHKDSIFIPPTKTHLYVSFFCTLIRLYLT 71

Query: 59  ENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGL 118
            +        + A   F++M  +   P +P +N+LL              +   +   G+
Sbjct: 72  HD------RFSTASATFSHMRALGLVPTLPFWNTLLYQFNASGLVSQVKLMYSDMLFCGV 125

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRK-VFSPDVVTLGCLIRGLCMQGKFTEAS 177
           +PD  S+N+L++  CK   V D  +ALG +    V   D VT   +I G C +G   +  
Sbjct: 126 VPDVFSVNVLVHSLCK---VGDLDLALGYLRNNDVVDIDNVTYNTVIWGFCQKGLVDQGF 182

Query: 178 GLFTKFVA----FD-----------CR----------------PNVIPNVICYASIIDGL 206
           GL ++ V     FD           CR                  V  +VI   ++IDG 
Sbjct: 183 GLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLVDGGVTKDVIGLNTLIDGY 242

Query: 207 CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN--------------WEDAKG 252
           C+   +++   L  +     +  D   YN+L++ +C   +              W+D   
Sbjct: 243 CEAVLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGDLTRAESLFNEILGFWKDEDR 302

Query: 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
             +  +    E  N          P +++Y ++I + CK V V+++  L+  M   GI+P
Sbjct: 303 LKNNDVVTQNEIKN--------LQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMP 354

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
           DVV  SS++ G+C  G++ +A  LF  +   G  P+  SY T+INS  K  +V EA +L 
Sbjct: 355 DVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQ 414

Query: 373 GEMISMGVRPD-NSCIL------------EAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            +M+  G+  D  +C              EA E+F T+       +   ++ L+DG CK 
Sbjct: 415 SQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKL 474

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            ++  A  + +K+ +    PNV+T++ +I G   +G + KA D+L +M ++
Sbjct: 475 GKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQR 525



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 121/470 (25%), Positives = 200/470 (42%), Gaps = 92/470 (19%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           L P  V+   L+  +CK +GV ++     +++     PDVVT   ++ G C  GK TEA+
Sbjct: 317 LQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAA 376

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            LF +         + PN + YA+II+ L K G V +   L   M  RGI  D     ++
Sbjct: 377 VLFREMYEM----GLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTV 432

Query: 238 IRVYCCAVNWEDAKGNTSAALEL--------HEEFVNGNGELGVI--------------C 275
           +         ++A+      L+L        +   ++G  +LG +               
Sbjct: 433 MDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHV 492

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC---------- 325
            P+V+++ SIIN   K  ++ KA ++  +M  R ++P+ +VY+ LIDGY           
Sbjct: 493 PPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADD 552

Query: 326 -------------------------LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
                                     +GR+D+AR L + + S+G  PD  +Y +LI+ Y 
Sbjct: 553 FCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYF 612

Query: 361 KIEKVEEALSLYGEMISMGVRPD----NSCILEAAELF----RTLHNTKFELDLT----V 408
           K      ALS+  EM    +R D    N+ I     L     R + +   EL L      
Sbjct: 613 KEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPRYVCSRMIELGLAPDCIT 672

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE---------K 459
           +N +++  C   +   A ++  ++  YG  PN VTY ++I GLC  G +          K
Sbjct: 673 YNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGFVPTPITHKFLVK 732

Query: 460 AY------DLLPDMEEKI----RECLKAIELLHKMAKRYVKPDEITVSIL 499
           AY      D +  + EK+     E  +   +L +M KR +  D +T + L
Sbjct: 733 AYSRSEKADKILQIHEKLVASGLELKRQKVVLDEMVKRGISADLVTYNAL 782



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 96/399 (24%), Positives = 178/399 (44%), Gaps = 77/399 (19%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           E +  + L P+ V+ + L++ +CK+  +  A + L ++ ++   P+V+T   +I G   +
Sbjct: 450 ETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKK 509

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDG------------LCKD--------- 209
           G  ++A  +  + V    + NV+PN I YA +IDG             CK+         
Sbjct: 510 GMLSKAVDVLREMV----QRNVMPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEES 565

Query: 210 --------------GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTS 255
                         G +++ R L +DM  +GI PD   Y SLI  Y         +GN  
Sbjct: 566 NVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYF-------KEGNQL 618

Query: 256 AALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV 315
           AAL + +E    N         DV++Y ++I  L +    D  + +   M   G+ PD +
Sbjct: 619 AALSIVQEMKEKNIRF------DVVAYNALIKGLLRLGKYD-PRYVCSRMIELGLAPDCI 671

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN------------------ 357
            Y+++I+ YC+ G+ +DA  +   ++S G +P+  +YN LI                   
Sbjct: 672 TYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGFVPTPITHKFLV 731

Query: 358 -SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
            +YS+ EK ++ L ++ ++++ G+      ++    + R +       DL  +N L+ G 
Sbjct: 732 KAYSRSEKADKILQIHEKLVASGLELKRQKVVLDEMVKRGI-----SADLVTYNALIRGY 786

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
           C    +  A + + ++   G  PN+ TY  ++ GL   G
Sbjct: 787 CTGSHVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAG 825



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 116/486 (23%), Positives = 205/486 (42%), Gaps = 96/486 (19%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+  D + LN L++ +C+ + +S A   +    R     D+VT   L++  C  G  T A
Sbjct: 227 GVTKDVIGLNTLIDGYCEAVLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGDLTRA 286

Query: 177 SGLFTKFVAF---------------DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD 221
             LF + + F               +   N+ P ++ Y ++I   CK   V +   L+  
Sbjct: 287 ESLFNEILGFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEESHSLYKK 346

Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
           M   GI PD    +S++  +C         G  + A  L  E      E+G+   P+ +S
Sbjct: 347 MIMNGIMPDVVTCSSILYGFC-------RHGKLTEAAVLFREMY----EMGL--DPNHVS 393

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGI------------------------------- 310
           Y +IINSL K   V +A  L   M  RGI                               
Sbjct: 394 YATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETIL 453

Query: 311 ----IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
                P+ V YS+L+DGYC +G+++ A  +   +E E   P+  +++++IN Y+K   + 
Sbjct: 454 KLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLS 513

Query: 367 EALSLYGEMISMGVRPDN---SCILE----------AAELFRTLHNTKFELDLTVFNCLV 413
           +A+ +  EM+   V P+    + +++          A +  + + + + E    +F+ L+
Sbjct: 514 KAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILL 573

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-IR 472
           + L +  R+  A  L   +   G +P++V Y  +I G   EG    A  ++ +M+EK IR
Sbjct: 574 NNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNIR 633

Query: 473 -------ECLKAIELLHKMAKRYV---------KPDEITVSILEE---LLNKDENCHECM 513
                    +K +  L K   RYV          PD IT + +     +  K E+  + +
Sbjct: 634 FDVVAYNALIKGLLRLGKYDPRYVCSRMIELGLAPDCITYNTIINTYCIKGKTEDALDIL 693

Query: 514 NLLPSF 519
           N + S+
Sbjct: 694 NEMKSY 699



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 143/305 (46%), Gaps = 31/305 (10%)

Query: 89  SFNSLL-GALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGR 147
           ++N+L+ G L   KY   ++C   R+  +GL PD ++ N ++N +C      DA   L  
Sbjct: 638 AYNALIKGLLRLGKYDPRYVC--SRMIELGLAPDCITYNTIINTYCIKGKTEDALDILNE 695

Query: 148 ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207
           +      P+ VT   LI GLC  G F          V    R      ++    I + L 
Sbjct: 696 MKSYGIMPNAVTYNILIGGLCKTG-FVPTPITHKFLVKAYSRSEKADKIL---QIHEKLV 751

Query: 208 KDGF-VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266
             G  + + +V+  +M  RGI  D   YN+LIR YC   + E A    S      + FV+
Sbjct: 752 ASGLELKRQKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYS------QMFVD 805

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAK----ELFLDMKSRGIIPDVVVYSSLID 322
           G         P++ +Y +++  L    L+++      +L  +M  RG++P+   Y  L+ 
Sbjct: 806 G-------IAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDILVS 858

Query: 323 GYCLMGRIDDARK---LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
           GY   GR+ + +K   L + + ++G +P   +YN LI+ Y+K  K+ EA  L  ++++ G
Sbjct: 859 GY---GRVGNRKKTIILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARELLNDLLTKG 915

Query: 380 VRPDN 384
             P++
Sbjct: 916 RIPNS 920



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 147/347 (42%), Gaps = 69/347 (19%)

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           D V+ N L+    ++ G  D      R++    +PD +T   +I   C++GK  +A  + 
Sbjct: 635 DVVAYNALIKGLLRL-GKYDPRYVCSRMIELGLAPDCITYNTIINTYCIKGKTEDALDIL 693

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            +  ++     ++PN + Y  +I GLCK GFV                P    +  L++ 
Sbjct: 694 NEMKSY----GIMPNAVTYNILIGGLCKTGFV----------------PTPITHKFLVKA 733

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGEL-------------GVICHPDVLSYCSIIN 287
           Y  +   E A       L++HE+ V    EL             G+    D+++Y ++I 
Sbjct: 734 YSRS---EKA----DKILQIHEKLVASGLELKRQKVVLDEMVKRGI--SADLVTYNALIR 784

Query: 288 SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG----RIDDARKLFVSIESE 343
             C    V+KA + +  M   GI P++  Y++L+ G    G     +++  KL   +   
Sbjct: 785 GYCTGSHVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNER 844

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFE 403
           G +P+ ++Y+ L++ Y ++   ++ + L+ EMI+ G  P                     
Sbjct: 845 GLVPNAATYDILVSGYGRVGNRKKTIILHIEMITKGFVPT-------------------- 884

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
             L  +N L+    KS ++  A EL   L   G  PN  TY ++ CG
Sbjct: 885 --LKTYNVLISDYAKSGKMIEARELLNDLLTKGRIPNSFTYDILTCG 929



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/287 (21%), Positives = 118/287 (41%), Gaps = 57/287 (19%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK--- 134
           MI +   P   ++N+++     K    + + +   + + G++P+ V+ NIL+   CK   
Sbjct: 661 MIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGF 720

Query: 135 ----------------------MIGVSDAFVALG-----------RILRKVFSPDVVTLG 161
                                 ++ + +  VA G            ++++  S D+VT  
Sbjct: 721 VPTPITHKFLVKAYSRSEKADKILQIHEKLVASGLELKRQKVVLDEMVKRGISADLVTYN 780

Query: 162 CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRV---- 217
            LIRG C      +A   +++         + PN+  Y +++ GL   G + ++      
Sbjct: 781 ALIRGYCTGSHVEKALKTYSQMFV----DGIAPNITTYNTLLGGLSNAGLMEEMMEETEK 836

Query: 218 LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277
           L  +M  RG+ P+A  Y+ L+  Y          GN    + LH E +      G +  P
Sbjct: 837 LVSEMNERGLVPNAATYDILVSGYGRV-------GNRKKTIILHIEMITK----GFV--P 883

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
            + +Y  +I+   K   + +A+EL  D+ ++G IP+   Y  L  G+
Sbjct: 884 TLKTYNVLISDYAKSGKMIEARELLNDLLTKGRIPNSFTYDILTCGW 930


>gi|83744090|gb|ABC42331.1| PPR protein [Oryza sativa Indica Group]
          Length = 506

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 116/464 (25%), Positives = 199/464 (42%), Gaps = 102/464 (21%)

Query: 57  LSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           + + ++ G     DAL  F+ ++       + S N  L  +A +      +    R+   
Sbjct: 23  IQDRARVGSGGAEDALDVFDELLRRGIGAPIRSLNGALADVA-RDNPAAAVSRFNRMARA 81

Query: 117 G---LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF 173
           G   + P   +  IL+ C C    +   F ALG +++K F  + +    L++GLC   + 
Sbjct: 82  GASMVTPTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRT 141

Query: 174 TEASGLFTK-FVAFDCRPNV---------------------------------IPNVICY 199
            +A  +  +      C PNV                                 +PNV+ Y
Sbjct: 142 DDAMDIVLRGMTELGCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSY 201

Query: 200 ASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT-SAAL 258
           +++ DGL K G  +K    + +M  R I P+   Y+S+I   C        KG     A+
Sbjct: 202 STVTDGLLKGGDPDKAYATYREMLDRRILPNVVTYSSIIAALC--------KGQAMDKAM 253

Query: 259 ELHEEFV-NG-----------------NGEL-------------GVICHPDVLSYCSIIN 287
           E+H+  V NG                 +G+L             GV   P+V++Y S ++
Sbjct: 254 EVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGV--EPNVVTYSSFMD 311

Query: 288 SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
            LCK+    +A+++F  M  RG+ PD+  YSSL+ GY + G + +   LF  +      P
Sbjct: 312 YLCKNGRCTEARKIFYSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQP 371

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLT 407
           D   +NTLI + +K  KV+EA+ ++ +M   G++P+  C+                    
Sbjct: 372 DHYVFNTLIYASAKQGKVDEAMLVFSKMRHQGLKPN--CV-------------------- 409

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
            +N L++G CK  R+ +A  LF+++   G  PN +TY +M+ GL
Sbjct: 410 TYNTLINGYCKITRMENALALFQEMVSNGVSPNFITYNIMLQGL 453



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 131/264 (49%), Gaps = 21/264 (7%)

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
           +LP+ V+ + ++   CK   +  A     R+++   +P+  T   L+ G C  G+ TEA 
Sbjct: 229 ILPNVVTYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEA- 287

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
               KF+   C   V PNV+ Y+S +D LCK+G   + R +F  M  RG+ PD   Y+SL
Sbjct: 288 ---IKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFYSMVKRGLKPDITTYSSL 344

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC--HPDVLSYCSIINSLCKDVLV 295
           +  Y              A +E+H  F     +L V     PD   + ++I +  K   V
Sbjct: 345 LHGYAIE----------GALVEMHGLF-----DLMVQSDMQPDHYVFNTLIYASAKQGKV 389

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           D+A  +F  M+ +G+ P+ V Y++LI+GYC + R+++A  LF  + S G  P+  +YN +
Sbjct: 390 DEAMLVFSKMRHQGLKPNCVTYNTLINGYCKITRMENALALFQEMVSNGVSPNFITYNIM 449

Query: 356 INSYSKIEKVEEALSLYGEMISMG 379
           +    +  +   A   Y ++I  G
Sbjct: 450 LQGLFRTGRTGTAKEFYVQIIKSG 473



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 131/276 (47%), Gaps = 17/276 (6%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           + A   +  M+  +  P + +++S++ AL   +     + + +R+   G+ P+  +   L
Sbjct: 215 DKAYATYREMLDRRILPNVVTYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSL 274

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           ++ FC    +++A   L ++      P+VVT    +  LC  G+ TEA  +F   V    
Sbjct: 275 VHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFYSMV---- 330

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
           +  + P++  Y+S++ G   +G + ++  LF  M    + PD +V+N+LI  Y  A    
Sbjct: 331 KRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLI--YASA---- 384

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
             +G    A+ +  +  +          P+ ++Y ++IN  CK   ++ A  LF +M S 
Sbjct: 385 -KQGKVDEAMLVFSKMRHQG------LKPNCVTYNTLINGYCKITRMENALALFQEMVSN 437

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           G+ P+ + Y+ ++ G    GR   A++ +V I   G
Sbjct: 438 GVSPNFITYNIMLQGLFRTGRTGTAKEFYVQIIKSG 473



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 111/243 (45%), Gaps = 19/243 (7%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++ A+   + M+    TP   ++ SL+            I   E++ + G+ P+ V+ + 
Sbjct: 249 MDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSS 308

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
            M+  CK    ++A      ++++   PD+ T   L+ G  ++G   E  GLF   V  D
Sbjct: 309 FMDYLCKNGRCTEARKIFYSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSD 368

Query: 188 CRPN-VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            +P+  + N + YAS      K G V++  ++F  M+ +G+ P+   YN+LI  YC    
Sbjct: 369 MQPDHYVFNTLIYAS-----AKQGKVDEAMLVFSKMRHQGLKPNCVTYNTLINGYCKITR 423

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            E+       AL L +E V+ NG       P+ ++Y  ++  L +      AKE ++ + 
Sbjct: 424 MEN-------ALALFQEMVS-NG-----VSPNFITYNIMLQGLFRTGRTGTAKEFYVQII 470

Query: 307 SRG 309
             G
Sbjct: 471 KSG 473



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 104/242 (42%), Gaps = 42/242 (17%)

Query: 285 IINSLCKDVLVDKAKELFL-DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF--VSIE 341
           ++  LC D   D A ++ L  M   G +P+V  ++ ++ G C   R  +A +L   ++ +
Sbjct: 131 LLKGLCADKRTDDAMDIVLRGMTELGCVPNVFSHTIILKGLCHENRSQEALELLHMMADD 190

Query: 342 SEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK 401
             GC+P+  SY+T+ +   K    ++A + Y EM+   + P+                  
Sbjct: 191 GGGCLPNVVSYSTVTDGLLKGGDPDKAYATYREMLDRRILPN------------------ 232

Query: 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461
               +  ++ ++  LCK   +  A E+  ++ + G  PN  TYT ++ G C  G      
Sbjct: 233 ----VVTYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSG------ 282

Query: 462 DLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
                      +  +AI+ L KM    V+P+ +T S   + L K+  C E   +  S + 
Sbjct: 283 -----------QLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFYSMVK 331

Query: 522 RN 523
           R 
Sbjct: 332 RG 333


>gi|115474201|ref|NP_001060699.1| Os07g0688100 [Oryza sativa Japonica Group]
 gi|33146488|dbj|BAC79597.1| membrane-associated salt-inducible protein-like [Oryza sativa
           Japonica Group]
 gi|50509161|dbj|BAD30301.1| membrane-associated salt-inducible protein-like [Oryza sativa
           Japonica Group]
 gi|113612235|dbj|BAF22613.1| Os07g0688100 [Oryza sativa Japonica Group]
 gi|215678726|dbj|BAG95163.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222637719|gb|EEE67851.1| hypothetical protein OsJ_25651 [Oryza sativa Japonica Group]
          Length = 665

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 112/372 (30%), Positives = 179/372 (48%), Gaps = 32/372 (8%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           ++  G  PDF + NI ++  C    + DA   + ++  K   PDVVT   ++  LC   +
Sbjct: 256 MDKFGCFPDFWACNIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRR 315

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
           F+EA GL+ + V    R  + P+V+   ++I GLCK+  V++   L   M    I  +  
Sbjct: 316 FSEAVGLWEEMV----RRGLKPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLNVS 371

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
           +YN+LI  +  A + E A    S        F+  NG     C PDV++Y  ++N  C  
Sbjct: 372 IYNALISGFWRAGSIEKAYKTVS--------FMQRNG-----CEPDVVTYNILLNHYCSI 418

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE-GCIPDTSS 351
            + DKA+ L   M+  G+ PD   Y+ L+ G C   ++D A   FVS   E G   D  S
Sbjct: 419 GMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAFA-FVSDHMEVGGFCDIVS 477

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPD--NSCIL-----------EAAELFRTLH 398
            N LI+++ + +KV  AL+L+ EM   G++ D     IL            A ELF  + 
Sbjct: 478 CNILIDAFCRAKKVNSALNLFKEMGYKGIQADAVTYGILINGLFGIGYSNLAEELFDQML 537

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
           NTK   ++ V+N ++  LCK    + A ++F ++ +    P+ VT+  +I  L       
Sbjct: 538 NTKIVPNVNVYNIMLHNLCKVGHFKHAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAV 597

Query: 459 KAYDLLPDMEEK 470
           +A DL  +M  K
Sbjct: 598 EALDLFKEMRTK 609



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 117/431 (27%), Positives = 187/431 (43%), Gaps = 38/431 (8%)

Query: 55  KYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSF---NSLLGALAGKKYYVNFICLSE 111
           ++++   +S  +EL + L     +  M      P F   N  +  L G     + + + E
Sbjct: 235 RWITALCQSNRIELVEEL-----LTDMDKFGCFPDFWACNIYVHYLCGHNRLYDALQMVE 289

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           ++   G  PD V+   +++C C     S+A      ++R+   PDVV  G LI GLC   
Sbjct: 290 KMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCKNQ 349

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
           K  EA  L ++ +  D    +  NV  Y ++I G  + G + K       M+  G  PD 
Sbjct: 350 KVDEAFELASRMLTLD----IQLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDV 405

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
             YN L+  Y C++   D   N    +E+           GV  +PD  SY  ++  LCK
Sbjct: 406 VTYNILLNHY-CSIGMTDKAENLIRKMEMS----------GV--NPDRYSYNILLKGLCK 452

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
              +DKA     D    G   D+V  + LID +C   +++ A  LF  +  +G   D  +
Sbjct: 453 AHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYKGIQADAVT 512

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPD---------NSCIL----EAAELFRTLH 398
           Y  LIN    I     A  L+ +M++  + P+         N C +     A ++F  + 
Sbjct: 513 YGILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVGHFKHAQKIFWQMT 572

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
             +   D   FN L+  L KS R   A +LFK++   G EP+ +T+  +I GL  EG   
Sbjct: 573 QKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEPDNLTFRYIISGLLDEGKAT 632

Query: 459 KAYDLLPDMEE 469
            AY++   M E
Sbjct: 633 LAYEIWEYMME 643



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 133/546 (24%), Positives = 204/546 (37%), Gaps = 108/546 (19%)

Query: 79  IHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGV 138
           +H++  PF+   N +L  L      V F   +E        P F   N  +     ++ V
Sbjct: 86  LHVELDPFV--VNKVLRGLLDSGMAVRFYWWAESR------PGFYHNNFAIAYIISLLFV 137

Query: 139 SDAFVALGRILRKVFSPDVVTLGCLIR----GLCMQGKFTEASGLFTKFVAFDCRP---- 190
            D F  L   L +V S  V     L R    G    GKF      F + V   CR     
Sbjct: 138 DDNFALLSEFLGRVRSQGVAFHRSLYRVLLAGYARAGKFDSVIETFDEMVTSGCREFGVD 197

Query: 191 -----NVIPNVIC----------------------YASIIDGLCKDGFVNKVRVLFLDMK 223
                 V+    C                      Y+  I  LC+   +  V  L  DM 
Sbjct: 198 YNRFIGVMIKNCCFDLVEKYYNMALAKGFCLTPFTYSRWITALCQSNRIELVEELLTDMD 257

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDA---------KGNT-------------------S 255
             G +PD +  N  +   C      DA         KG                     S
Sbjct: 258 KFGCFPDFWACNIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFS 317

Query: 256 AALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV 315
            A+ L EE V           PDV++  ++I  LCK+  VD+A EL   M +  I  +V 
Sbjct: 318 EAVGLWEEMVRRG------LKPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLNVS 371

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
           +Y++LI G+   G I+ A K    ++  GC PD  +YN L+N Y  I   ++A +L  +M
Sbjct: 372 IYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDVVTYNILLNHYCSIGMTDKAENLIRKM 431

Query: 376 ISMGVRPDN-------SCILEAAELFRTLHNTKFELDLTVF------NCLVDGLCKSWRL 422
              GV PD          + +A +L +        +++  F      N L+D  C++ ++
Sbjct: 432 EMSGVNPDRYSYNILLKGLCKAHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCRAKKV 491

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------- 469
            SA  LFK++   G + + VTY ++I GL   G    A +L   M               
Sbjct: 492 NSALNLFKEMGYKGIQADAVTYGILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIM 551

Query: 470 -----KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQ 524
                K+     A ++  +M ++ V PD +T + L   L K     E ++L     ++  
Sbjct: 552 LHNLCKVGHFKHAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGV 611

Query: 525 EESKLT 530
           E   LT
Sbjct: 612 EPDNLT 617



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 121/268 (45%), Gaps = 19/268 (7%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILR-KVFSPDVVTLGCLIRGLCMQGKFTE 175
           G  PD V+ NIL+N +C  IG++D    L R +     +PD  +   L++GLC   +  +
Sbjct: 400 GCEPDVVTYNILLNHYCS-IGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDK 458

Query: 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
           A      FV+         +++    +ID  C+   VN    LF +M  +GI  DA  Y 
Sbjct: 459 AFA----FVSDHMEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYKGIQADAVTYG 514

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
            LI       N     G ++ A EL ++ +N          P+V  Y  ++++LCK    
Sbjct: 515 ILI-------NGLFGIGYSNLAEELFDQMLNTK------IVPNVNVYNIMLHNLCKVGHF 561

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
             A+++F  M  + + PD V +++LI       R  +A  LF  + ++G  PD  ++  +
Sbjct: 562 KHAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEPDNLTFRYI 621

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPD 383
           I+      K   A  ++  M+  G+  D
Sbjct: 622 ISGLLDEGKATLAYEIWEYMMENGIILD 649



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 108/249 (43%), Gaps = 17/249 (6%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L  ++   G+ PD  S NIL+   CK   +  AF  +   +      D+V+   LI   C
Sbjct: 427 LIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFC 486

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
              K   A  LF +         +  + + Y  +I+GL   G+ N    LF  M    I 
Sbjct: 487 RAKKVNSALNLFKEM----GYKGIQADAVTYGILINGLFGIGYSNLAEELFDQMLNTKIV 542

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           P+  VYN ++   C   +++ A+       ++ ++ V+          PD +++ ++I  
Sbjct: 543 PNVNVYNIMLHNLCKVGHFKHAQ---KIFWQMTQKEVS----------PDTVTFNTLIYW 589

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           L K     +A +LF +M+++G+ PD + +  +I G    G+   A +++  +   G I D
Sbjct: 590 LGKSSRAVEALDLFKEMRTKGVEPDNLTFRYIISGLLDEGKATLAYEIWEYMMENGIILD 649

Query: 349 TSSYNTLIN 357
                 LI+
Sbjct: 650 RDVSERLIS 658


>gi|218200292|gb|EEC82719.1| hypothetical protein OsI_27404 [Oryza sativa Indica Group]
          Length = 665

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 112/372 (30%), Positives = 179/372 (48%), Gaps = 32/372 (8%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           ++  G  PDF + NI ++  C    + DA   + ++  K   PDVVT   ++  LC   +
Sbjct: 256 MDKFGCFPDFWACNIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRR 315

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
           F+EA GL+ + V    R  + P+V+   ++I GLCK+  V++   L   M    I  +  
Sbjct: 316 FSEAVGLWEEMV----RRGLKPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLNVS 371

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
           +YN+LI  +  A + E A    S        F+  NG     C PDV++Y  ++N  C  
Sbjct: 372 IYNALISGFWRAGSIEKAYKTVS--------FMQRNG-----CEPDVVTYNILLNHYCSI 418

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE-GCIPDTSS 351
            + DKA+ L   M+  G+ PD   Y+ L+ G C   ++D A   FVS   E G   D  S
Sbjct: 419 GMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAFA-FVSDHMEVGGFCDIVS 477

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPD--NSCIL-----------EAAELFRTLH 398
            N LI+++ + +KV  AL+L+ EM   G++ D     IL            A ELF  + 
Sbjct: 478 CNILIDAFCRAKKVNSALNLFKEMGYKGIQADAVTYGILINGLFGIGYSNLAEELFDQML 537

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
           NTK   ++ V+N ++  LCK    + A ++F ++ +    P+ VT+  +I  L       
Sbjct: 538 NTKIVPNVNVYNIMLHNLCKVGHFKHAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAV 597

Query: 459 KAYDLLPDMEEK 470
           +A DL  +M  K
Sbjct: 598 EALDLFKEMRTK 609



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 117/431 (27%), Positives = 187/431 (43%), Gaps = 38/431 (8%)

Query: 55  KYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSF---NSLLGALAGKKYYVNFICLSE 111
           ++++   +S  +EL + L     +  M      P F   N  +  L G     + + + E
Sbjct: 235 RWITALCQSNRIELVEEL-----LTDMDKFGCFPDFWACNIYVHYLCGHNRLYDALQMVE 289

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           ++   G  PD V+   +++C C     S+A      ++R+   PDVV  G LI GLC   
Sbjct: 290 KMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCKNQ 349

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
           K  EA  L ++ +  D    +  NV  Y ++I G  + G + K       M+  G  PD 
Sbjct: 350 KVDEAFELASRMLTLD----IQLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDV 405

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
             YN L+  Y C++   D   N    +E+           GV  +PD  SY  ++  LCK
Sbjct: 406 VTYNILLNHY-CSIGMTDKAENLIRKMEMS----------GV--NPDRYSYNILLKGLCK 452

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
              +DKA     D    G   D+V  + LID +C   +++ A  LF  +  +G   D  +
Sbjct: 453 AHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYKGIQADAVT 512

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPD---------NSCIL----EAAELFRTLH 398
           Y  LIN    I     A  L+ +M++  + P+         N C +     A ++F  + 
Sbjct: 513 YGILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVGHFKHAQKIFWQMT 572

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
             +   D   FN L+  L KS R   A +LFK++   G EP+ +T+  +I GL  EG   
Sbjct: 573 QKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEPDNLTFRYIISGLLDEGKAT 632

Query: 459 KAYDLLPDMEE 469
            AY++   M E
Sbjct: 633 LAYEIWEYMME 643



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 133/546 (24%), Positives = 205/546 (37%), Gaps = 108/546 (19%)

Query: 79  IHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGV 138
           +H++  PF+   N +L  L+     V F   +E        P F   N  +     ++ V
Sbjct: 86  LHVELDPFV--VNKVLRGLSDSGMAVRFYWWAESR------PGFYHNNFAIAYIISLLFV 137

Query: 139 SDAFVALGRILRKVFSPDVVTLGCLIR----GLCMQGKFTEASGLFTKFVAFDCRP---- 190
            D F  L   L +V S  V     L R    G    GKF      F + V   CR     
Sbjct: 138 DDNFALLLEFLGRVRSQGVAFHRSLYRVLLAGYARAGKFDSVIETFDEMVTSGCREFGVD 197

Query: 191 -----NVIPNVIC----------------------YASIIDGLCKDGFVNKVRVLFLDMK 223
                 V+    C                      Y+  I  LC+   +  V  L  DM 
Sbjct: 198 YNRFIGVMIKNCCFDLVEKYYNMALAKGFCLTPFTYSRWITALCQSNRIELVEELLTDMD 257

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDA---------KGNT-------------------S 255
             G +PD +  N  +   C      DA         KG                     S
Sbjct: 258 KFGCFPDFWACNIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFS 317

Query: 256 AALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV 315
            A+ L EE V           PDV++  ++I  LCK+  VD+A EL   M +  I  +V 
Sbjct: 318 EAVGLWEEMVRRG------LKPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLNVS 371

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
           +Y++LI G+   G I+ A K    ++  GC PD  +YN L+N Y  I   ++A +L  +M
Sbjct: 372 IYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDVVTYNILLNHYCSIGMTDKAENLIRKM 431

Query: 376 ISMGVRPDN-------SCILEAAELFRTLHNTKFELDLTVF------NCLVDGLCKSWRL 422
              GV PD          + +A +L +        +++  F      N L+D  C++ ++
Sbjct: 432 EMSGVNPDRYSYNILLKGLCKAHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCRAKKV 491

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------- 469
            SA  LFK++   G + + VTY ++I GL   G    A +L   M               
Sbjct: 492 NSALNLFKEMGYKGIQADAVTYGILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIM 551

Query: 470 -----KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQ 524
                K+     A ++  +M ++ V PD +T + L   L K     E ++L     ++  
Sbjct: 552 LHNLCKVGHFKHAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGV 611

Query: 525 EESKLT 530
           E   LT
Sbjct: 612 EPDNLT 617



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 121/268 (45%), Gaps = 19/268 (7%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILR-KVFSPDVVTLGCLIRGLCMQGKFTE 175
           G  PD V+ NIL+N +C  IG++D    L R +     +PD  +   L++GLC   +  +
Sbjct: 400 GCEPDVVTYNILLNHYCS-IGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDK 458

Query: 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
           A      FV+         +++    +ID  C+   VN    LF +M  +GI  DA  Y 
Sbjct: 459 AFA----FVSDHMEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYKGIQADAVTYG 514

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
            LI       N     G ++ A EL ++ +N          P+V  Y  ++++LCK    
Sbjct: 515 ILI-------NGLFGIGYSNLAEELFDQMLNTK------IVPNVNVYNIMLHNLCKVGHF 561

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
             A+++F  M  + + PD V +++LI       R  +A  LF  + ++G  PD  ++  +
Sbjct: 562 KHAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEPDNLTFRYI 621

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPD 383
           I+      K   A  ++  M+  G+  D
Sbjct: 622 ISGLLDEGKATLAYEIWEYMMENGIILD 649



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 108/249 (43%), Gaps = 17/249 (6%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L  ++   G+ PD  S NIL+   CK   +  AF  +   +      D+V+   LI   C
Sbjct: 427 LIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFC 486

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
              K   A  LF +         +  + + Y  +I+GL   G+ N    LF  M    I 
Sbjct: 487 RAKKVNSALNLFKEM----GYKGIQADAVTYGILINGLFGIGYSNLAEELFDQMLNTKIV 542

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           P+  VYN ++   C   +++ A+       ++ ++ V+          PD +++ ++I  
Sbjct: 543 PNVNVYNIMLHNLCKVGHFKHAQ---KIFWQMTQKEVS----------PDTVTFNTLIYW 589

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           L K     +A +LF +M+++G+ PD + +  +I G    G+   A +++  +   G I D
Sbjct: 590 LGKSSRAVEALDLFKEMRTKGVEPDNLTFRYIISGLLDEGKATLAYEIWEYMMENGIILD 649

Query: 349 TSSYNTLIN 357
                 LI+
Sbjct: 650 RDVSERLIS 658


>gi|52076779|dbj|BAD45723.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
          Length = 629

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 113/415 (27%), Positives = 181/415 (43%), Gaps = 77/415 (18%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
           PDVVT G L+ GLC  G+  +A  +       D   ++ P+V+   +++DGLCK G V +
Sbjct: 170 PDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDL--DIRPDVVTLNTVVDGLCKSGRVQE 227

Query: 215 VRVLFLDMKGRGIY---PDAFVYNSLIRVYCCAVNWEDA--------------------- 250
             + F++ +   ++   P+   YN LI  +C   N   A                     
Sbjct: 228 A-LAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNT 286

Query: 251 -------KGNTSAALELHEE----FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
                   G T AALE   E    +  G G        + ++Y +++ +L     V  A 
Sbjct: 287 IVGGLCRAGRTGAALEFFREKRTVWPEGKG--------NAVTYSTLVGALLHTNNVGMAM 338

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           ELF +  S G  PD ++Y ++I G    GR++DA  +  S++  G   DT +YN LI  +
Sbjct: 339 ELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGF 398

Query: 360 SKIEKVEEALSLYGEMISMGVRPD---------NSC----ILEAAELFRTLHNTKFELDL 406
            + +++ EA  L  EM  +G+RPD          SC         EL   + +   +  +
Sbjct: 399 CRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSV 458

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             F  LV G CK  ++  A  + + +   G  PN V Y  +I  LC  G ++ A +L  +
Sbjct: 459 ITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDE 518

Query: 467 MEEK---------------IRE---CLKAIELLHKMAKRYVKPDEITVSILEELL 503
           M+EK               +R+     KA EL+ +M +    PD +TV +L E L
Sbjct: 519 MKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREERCFPDYVTVDVLMEWL 573



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 21/248 (8%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           ++  +   G   D  + NIL+  FC+   + +A+  L  +      PDV T   L+ G C
Sbjct: 375 MASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSC 434

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
             G F     L  K +   C+P+VI     + +++ G CK G +++   +   M   GI+
Sbjct: 435 KAGDFAAVDELLGKMIDDGCQPSVI----TFGTLVHGYCKVGKIDEALRILRSMDESGIH 490

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           P+  +YN+LI   C        +G+   A+EL +E    +         +V ++ +++  
Sbjct: 491 PNNVIYNTLIDFLC-------KRGDVDLAIELFDEMKEKS------VPANVTTFNALLKG 537

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE---SEGC 345
           L    + +KA EL   M+     PD V    L++   ++G  D  ++     E   S+  
Sbjct: 538 LRDKNMPEKAFELMDQMREERCFPDYVTVDVLMEWLPVIGETDRLKRFMQQGEHTASKRI 597

Query: 346 IPD-TSSY 352
           + D TS+Y
Sbjct: 598 VSDRTSAY 605



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 103/216 (47%), Gaps = 23/216 (10%)

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKS-RGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           DV ++ SI+ +L +   V     ++  M+    + PDVV Y  L++G C  GR+ DA ++
Sbjct: 135 DVFAFNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRV 194

Query: 337 F--VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS--MGVRPDN---SCILE 389
              +S +     PD  + NT+++   K  +V+EAL+   + +S   G  P+    +C+++
Sbjct: 195 LDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLID 254

Query: 390 ----------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE- 438
                     A EL   + N     ++   N +V GLC++ R  +A E F++     PE 
Sbjct: 255 AFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEG 314

Query: 439 -PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
             N VTY+ ++  L     +  A +L     EK+ E
Sbjct: 315 KGNAVTYSTLVGALLHTNNVGMAMELF---HEKMSE 347



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 4/151 (2%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N L+     KK       L + +  +G+ PD  + N L++  CK    +     LG++
Sbjct: 390 AYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKM 449

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
           +     P V+T G L+ G C  GK  EA  +          PN   NVI Y ++ID LCK
Sbjct: 450 IDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPN---NVI-YNTLIDFLCK 505

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
            G V+    LF +MK + +  +   +N+L++
Sbjct: 506 RGDVDLAIELFDEMKEKSVPANVTTFNALLK 536



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 25/130 (19%)

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMIS-MGVRPDNSCILEAAELFRTLHNTKFELDL 406
           D  ++N+++ + +++  V     +Y  M     VRPD                      +
Sbjct: 135 DVFAFNSILAALARVRDVPGMARIYALMQGCASVRPD----------------------V 172

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE--PNVVTYTVMICGLCIEGGIEKAYDLL 464
             +  LV+GLCK+ R+  A  +   + R   +  P+VVT   ++ GLC  G +++A   +
Sbjct: 173 VTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFV 232

Query: 465 PDMEEKIREC 474
                 +  C
Sbjct: 233 EQRMSSVHGC 242


>gi|22135795|gb|AAM91084.1| AT4g28010/T13J8_120 [Arabidopsis thaliana]
          Length = 704

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 129/465 (27%), Positives = 196/465 (42%), Gaps = 72/465 (15%)

Query: 53  LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSER 112
           LLK L  N + G+     A+     M      P + S+N+++      K     + L+  
Sbjct: 148 LLKGLCRNLECGK-----AVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANE 202

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +   G     V+  IL++ FCK   + +A   L  +       D+V    LIRG C  G+
Sbjct: 203 MKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGE 262

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
                 LF + +         P  I Y ++I G CK G + +   +F  M  RG+ P+ +
Sbjct: 263 LDRGKALFDEVL----ERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVY 318

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            Y  LI   C         G T  AL+     +  + E      P+ ++Y  IIN LCKD
Sbjct: 319 TYTGLIDGLC-------GVGKTKEALQPLNLMIEKDEE------PNAVTYNIIINKLCKD 365

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI--ESEGCIPDTS 350
            LV  A E+   MK R   PD + Y+ L+ G C  G +D+A KL   +  +S    PD  
Sbjct: 366 GLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVI 425

Query: 351 SYNTLINSYSKIEKVEEALSLYG---EMISMGVRPDNSCIL----------EAAELFRTL 397
           SYN LI+   K  ++ +AL +Y    E +  G R   + +L          +A EL++ +
Sbjct: 426 SYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQI 485

Query: 398 HNTKF---------------------------------ELDLTVF--NCLVDGLCKSWRL 422
            ++K                                  EL  +VF  NCL+  LCK   L
Sbjct: 486 SDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSL 545

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
             AW LF+++ R    P+VV++ +MI G    G I+ A  LL  M
Sbjct: 546 DQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGM 590



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 120/461 (26%), Positives = 200/461 (43%), Gaps = 95/461 (20%)

Query: 39  LHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALA 98
           ++S  V+   E    L+ L E+S     +L +A+  F   +    +      N +   + 
Sbjct: 28  VYSKLVNAFSETETKLRSLCEDSNP---QLKNAVSVFQQAVDSGSSLAFAGSNLMAKLVR 84

Query: 99  GKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVV 158
            + + + F    + L T   + +FVSL+ L+ C+ +M     AF  L  +L++ F+ +V 
Sbjct: 85  SRNHELAFSFYRKMLETDTFI-NFVSLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVY 143

Query: 159 TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVL 218
               L++GL                    CR     N+ C               K   L
Sbjct: 144 NHNILLKGL--------------------CR-----NLEC--------------GKAVSL 164

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD 278
             +M+   + PD F YN++IR +C     E        ALEL  E + G+G     C   
Sbjct: 165 LREMRRNSLMPDVFSYNTVIRGFCEGKELE-------KALELANE-MKGSG-----CSWS 211

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
           ++++  +I++ CK   +D+A     +MK  G+  D+VVY+SLI G+C  G +D  + LF 
Sbjct: 212 LVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFD 271

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398
            +   G  P   +YNTLI  + K+ +++EA  ++  MI  GVRP                
Sbjct: 272 EVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRP---------------- 315

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
                 ++  +  L+DGLC   + + A +    +     EPN VTY ++I  LC +G   
Sbjct: 316 ------NVYTYTGLIDGLCGVGKTKEALQPLNLMIEKDEEPNAVTYNIIINKLCKDG--- 366

Query: 459 KAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
               L+ D          A+E++  M KR  +PD IT +IL
Sbjct: 367 ----LVAD----------AVEIVELMKKRRTRPDNITYNIL 393



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 111/419 (26%), Positives = 186/419 (44%), Gaps = 72/419 (17%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL------P 120
           +L +A   F +MI     P + ++  L+  L G           E L  + L+      P
Sbjct: 297 QLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGK------TKEALQPLNLMIEKDEEP 350

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           + V+ NI++N  CK   V+DA   +  + ++   PD +T   L+ GLC +G   EAS L 
Sbjct: 351 NAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLL 410

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK---VRVLFLDMKGRGIYPDAFVYNSL 237
             ++         P+VI Y ++I GLCK+  +++   +  L ++  G G   D    N L
Sbjct: 411 --YLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAG---DRVTTNIL 465

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEE---------------FVNG-------NGELGVIC 275
           +       N     G+ + A+EL ++                ++G       N   G++C
Sbjct: 466 L-------NSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLC 518

Query: 276 -------HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                   P V  Y  +++SLCK+  +D+A  LF +M+     PDVV ++ +IDG    G
Sbjct: 519 KMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAG 578

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS--- 385
            I  A  L V +   G  PD  +Y+ LIN + K+  ++EA+S + +M+  G  PD     
Sbjct: 579 DIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICD 638

Query: 386 -----CILEA-----AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
                CI +       EL + L +    LD  +   ++D +C S    +  +L K+L R
Sbjct: 639 SVLKYCISQGETDKLTELVKKLVDKDIVLDKELTCTVMDYMCNS---SANMDLAKRLLR 694


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 126/514 (24%), Positives = 220/514 (42%), Gaps = 76/514 (14%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L++A+  F ++   +  P   ++N+++        +     L ER    G +P  ++ N 
Sbjct: 289 LDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNC 348

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF---------TEASG 178
           ++ C  KM  V +A       ++K  +P++ T   LI  LC  GK           + +G
Sbjct: 349 ILTCLRKMGKVDEALRVFEE-MKKDAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAG 407

Query: 179 LFTKFVAFD------CRPNVI----------------PNVICYASIIDGLCKDGFVNKVR 216
           LF      +      C+   +                P+ I + S+IDGL K G V+   
Sbjct: 408 LFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAY 467

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            ++  M       ++ VY SLI+ +      ED         +++++ VN N      C 
Sbjct: 468 KIYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGH-------KIYKDMVNQN------CS 514

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PD+    + ++ + K    +K + +F ++KSR  +PD   YS LI G    G  ++  +L
Sbjct: 515 PDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYEL 574

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCIL---- 388
           F S++ +GC+ DT +YN +I+ + K  KV +A  L  EM + G  P      S I     
Sbjct: 575 FYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAK 634

Query: 389 -----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                EA  LF    + + EL++ +++ L+DG  K  R+  A+ + ++L + G  PNV T
Sbjct: 635 IDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYT 694

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMA 485
           +  ++  L     I +A      M+E                  K+R+  KA     +M 
Sbjct: 695 WNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQ 754

Query: 486 KRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519
           K+ +KP  I+ + +   L K  N  E   L   F
Sbjct: 755 KQGMKPSTISYTTMISGLAKAGNIAEAGALFDRF 788



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 111/460 (24%), Positives = 193/460 (41%), Gaps = 102/460 (22%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++++AL  F  M      P + ++N L+  L           L + +   GL P+  ++N
Sbjct: 358 KVDEALRVFEEM-KKDAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVN 416

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCM----------------- 169
           I+++  CK   + +A     ++  KV +PD +T   LI GL                   
Sbjct: 417 IMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDS 476

Query: 170 ------------------QGKFTEASGLFTKFVAFDCRPNV------------------- 192
                              G+  +   ++   V  +C P++                   
Sbjct: 477 DCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKG 536

Query: 193 ------------IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
                       +P+   Y+ +I GL K GF N+   LF  MK +G   D   YN +I  
Sbjct: 537 RAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDG 596

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
           +C         G  + A +L EE      E      P V++Y S+I+ L K   +D+A  
Sbjct: 597 FCKC-------GKVNKAYQLLEEMKTKGFE------PTVVTYGSVIDGLAKIDRLDEAYM 643

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           LF + KS+ I  +VV+YSSLIDG+  +GRID+A  +   +  +G  P+  ++N+L+++  
Sbjct: 644 LFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALV 703

Query: 361 KIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           K E++ EAL  +  M  +   P+                         +  L++GLCK  
Sbjct: 704 KAEEINEALVCFQSMKELKCTPNQ----------------------VTYGILINGLCKVR 741

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
           +   A+  ++++ + G +P+ ++YT MI GL   G I +A
Sbjct: 742 KFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEA 781



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 163/367 (44%), Gaps = 31/367 (8%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL PD V+   ++   CK   + +A      + +    P       +I G    GKF EA
Sbjct: 268 GLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEA 327

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L  +  A       IP+VI Y  I+  L K G V++   +F +MK +   P+   YN 
Sbjct: 328 YSLLERQRA----KGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMK-KDAAPNLSTYNI 382

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI + C A       G    A EL +              P+V +   +++ LCK   +D
Sbjct: 383 LIDMLCRA-------GKLDCAFELRDSMQKAG------LFPNVRTVNIMVDRLCKSQKLD 429

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A  +F  M  +   PD + + SLIDG   +GR+DDA K++  +    C  ++  Y +LI
Sbjct: 430 EACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLI 489

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD-------NSCILEAAE------LFRTLHNTKFE 403
            ++    + E+   +Y +M++    PD         C+ +A E      +F  + + +F 
Sbjct: 490 KNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFV 549

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D   ++ L+ GL K+      +ELF  +   G   +   Y ++I G C  G + KAY L
Sbjct: 550 PDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQL 609

Query: 464 LPDMEEK 470
           L +M+ K
Sbjct: 610 LEEMKTK 616



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 118/460 (25%), Positives = 207/460 (45%), Gaps = 37/460 (8%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
            K G+V++  A  FF+ +      P   ++ S++G L         + + E L     +P
Sbjct: 249 GKVGKVDM--AWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVP 306

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
              + N ++  +       +A+  L R   K   P V+   C++  L   GK  EA  +F
Sbjct: 307 CTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVF 366

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            +      + +  PN+  Y  +ID LC+ G ++    L   M+  G++P+    N ++  
Sbjct: 367 EEM-----KKDAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDR 421

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
            C +   ++A     A  E  +  V         C PD +++CS+I+ L K   VD A +
Sbjct: 422 LCKSQKLDEA----CAIFEQMDYKV---------CTPDEITFCSLIDGLGKVGRVDDAYK 468

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           ++  M       + +VY+SLI  +   GR +D  K++  + ++ C PD    NT ++   
Sbjct: 469 IYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMF 528

Query: 361 KIEKVEEALSLYGEMISMGVRPD--NSCIL-----------EAAELFRTLHNTKFELDLT 407
           K  + E+  +++ E+ S    PD  +  IL           E  ELF ++      LD  
Sbjct: 529 KAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTR 588

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            +N ++DG CK  ++  A++L +++   G EP VVTY  +I GL     +++AY L  + 
Sbjct: 589 AYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEA 648

Query: 468 EEKIRECLKAI--ELLHKMAKRYVKPDEITVSILEELLNK 505
           + K  E    I   L+    K   + DE  + ILEEL+ K
Sbjct: 649 KSKRIELNVVIYSSLIDGFGK-VGRIDEAYL-ILEELMQK 686



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 161/338 (47%), Gaps = 24/338 (7%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+GE E   A+  F  +   +  P   S++ L+  L    +      L   +   G + D
Sbjct: 529 KAGEPEKGRAM--FEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLD 586

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             + NI+++ FCK   V+ A+  L  +  K F P VVT G +I GL    +  EA  LF 
Sbjct: 587 TRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFE 646

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           +  +      +  NV+ Y+S+IDG  K G +++  ++  ++  +G+ P+ + +NSL+   
Sbjct: 647 EAKS----KRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDAL 702

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
                          A E++E  V       + C P+ ++Y  +IN LCK    +KA   
Sbjct: 703 V-------------KAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVF 749

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           + +M+ +G+ P  + Y+++I G    G I +A  LF   ++ G +PD++ YN +I   S 
Sbjct: 750 WQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSN 809

Query: 362 IEKVEEALSLYGEMISMGVRPDN-SCILEAAELFRTLH 398
             +  +A SL+ E    G+   N +C++    L  TLH
Sbjct: 810 GNRAMDAFSLFEETRRRGLHIHNKTCVV----LLDTLH 843



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 175/407 (42%), Gaps = 43/407 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMP-SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS- 124
           ++N A+ +F +       P  P S+NSLL  +A  + +     +   ++  G  P   + 
Sbjct: 77  DVNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTC 136

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
           + ++++C  K   + + F  +  + +  F P       LI              LF +  
Sbjct: 137 IEMVLSC-VKANKLREGFDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQ 195

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
                P V      + ++I G  K+G V+    L  +MK   +  D  +YN  I  +   
Sbjct: 196 ELGYEPTVH----LFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSF--- 248

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                  G    A +   E +  NG       PD ++Y S+I  LCK   +D+A E+F  
Sbjct: 249 ----GKVGKVDMAWKFFHE-IEANG-----LKPDEVTYTSMIGVLCKANRLDEAVEMFEH 298

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           ++    +P    Y+++I GY   G+ D+A  L     ++G IP   +YN ++    K+ K
Sbjct: 299 LEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGK 358

Query: 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
           V+EAL ++ EM             +AA             +L+ +N L+D LC++ +L  
Sbjct: 359 VDEALRVFEEMKK-----------DAAP------------NLSTYNILIDMLCRAGKLDC 395

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI 471
           A+EL   + + G  PNV T  +M+  LC    +++A  +   M+ K+
Sbjct: 396 AFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKV 442



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/197 (21%), Positives = 77/197 (39%), Gaps = 31/197 (15%)

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-NSCI------------LEAAELFRTL 397
           SYN+L+   ++    +    + GEM   G  P  N+CI             E  ++ + +
Sbjct: 100 SYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLSCVKANKLREGFDVVQNM 159

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
              KF    + +  L+              LF+++   G EP V  +T +I G   EG +
Sbjct: 160 RKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRV 219

Query: 458 EKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           + A  LL +M+                   K+ +   A +  H++    +KPDE+T + +
Sbjct: 220 DSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSM 279

Query: 500 EELLNKDENCHECMNLL 516
             +L K     E + + 
Sbjct: 280 IGVLCKANRLDEAVEMF 296


>gi|302757529|ref|XP_002962188.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
 gi|300170847|gb|EFJ37448.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
          Length = 535

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 125/523 (23%), Positives = 210/523 (40%), Gaps = 117/523 (22%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L+DAL FF   I     P + SFN LL   A +  +     L   +   G+  +  +  
Sbjct: 12  QLSDALGFFQSSI---SEPNVSSFNILLRGFAARDDFEVVNALLREMKARGITSNGATHG 68

Query: 127 ILMNCFCKMIGVSDAFVALG-------RILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           ++++  C    +  A            R+   + +PD VT   ++ GL   G +      
Sbjct: 69  VILSALCARRDLDKAVSYFNSRTEEACRLFEAIEAPDSVTYTAIVDGLFKAGNYDAGLEY 128

Query: 180 FTKFVAFDCRPNVI-------------------------------PNVICYASIIDGLCK 208
           + K VA  C P ++                               P++I Y+S+IDGL K
Sbjct: 129 YEKMVASKCEPTLLTYTVLVDGLCKAHKVERACDVFEEMIRKGHKPDIIAYSSLIDGLSK 188

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC-CAVNWEDAK---------------- 251
            G V++ R L   M  RG  P A  Y S++   C C    E  K                
Sbjct: 189 AGRVDEARKLVDLMIARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDT 248

Query: 252 -----------GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
                      G    A  + EE  + +      C PD +SY   I +L      ++A++
Sbjct: 249 YSFIVTGYIGMGKVEEAFAVMEEMADRD------CAPDTISYTMFIEALYSIGRREEAEK 302

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           +F  M  +G  PD+  Y  +ID +C  G +  A  +   ++     P+   Y  +++ + 
Sbjct: 303 VFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFV 362

Query: 361 KIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           K  ++EEAL LY  ++  G+ P                          +N +++ LCK  
Sbjct: 363 KSSRLEEALELYQRILKDGILPST----------------------VTYNTVINALCKLK 400

Query: 421 RLRSAWELFKKLPRYGPE--PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK--IRECL- 475
           ++  A EL +++ R   E  P++VTY+++I GL   G  E+A+DLL +M +   I +C  
Sbjct: 401 KMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFT 460

Query: 476 ---------------KAIELLHKMAKRYVKPDEITVSILEELL 503
                          +A+ELL +M K  + PD+ T   L ++L
Sbjct: 461 YTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQIL 503



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 172/386 (44%), Gaps = 44/386 (11%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           SK+G V  ++A    + MI   P P   ++ S++  L         +   + +    L P
Sbjct: 187 SKAGRV--DEARKLVDLMIARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRP 244

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
              + + ++  +  M  V +AF  +  +  +  +PD ++    I  L   G+  EA  +F
Sbjct: 245 RVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVF 304

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
              V   C+P++      Y  IID  CK+G +     +   M    + P+ ++Y  ++  
Sbjct: 305 ETMVEKGCKPDMH----TYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDG 360

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
           +  +   E+A       LEL++  +      G++  P  ++Y ++IN+LCK   +D+A E
Sbjct: 361 FVKSSRLEEA-------LELYQRILKD----GIL--PSTVTYNTVINALCKLKKMDEALE 407

Query: 301 LFLDMKSRG--IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
           L  +M+ R   + P +V YS +I G   +G  + A  L   +   G IPD  +Y +LI +
Sbjct: 408 LLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQT 467

Query: 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
            +   KV  A+ L  EM+  G+ PD+                        +  LV  LC+
Sbjct: 468 LAGAGKVSRAMELLEEMLKAGIFPDDH----------------------TYGTLVQILCR 505

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTY 444
           S  + +AW+L +++ R G  PN  T+
Sbjct: 506 S-DVDAAWDLLQEMMRNGHTPNEFTF 530



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 103/450 (22%), Positives = 176/450 (39%), Gaps = 102/450 (22%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKV----FSPDVVTLGCLIRGLCMQGKFTE 175
           P+  S NIL+  F       D F  +  +LR++     + +  T G ++  LC +    +
Sbjct: 27  PNVSSFNILLRGFA----ARDDFEVVNALLREMKARGITSNGATHGVILSALCARRDLDK 82

Query: 176 ASGLFTKFVAFDCR---PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
           A   F       CR       P+ + Y +I+DGL K                        
Sbjct: 83  AVSYFNSRTEEACRLFEAIEAPDSVTYTAIVDGLFK------------------------ 118

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
                              GN  A LE +E+ V         C P +L+Y  +++ LCK 
Sbjct: 119 ------------------AGNYDAGLEYYEKMVASK------CEPTLLTYTVLVDGLCKA 154

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             V++A ++F +M  +G  PD++ YSSLIDG    GR+D+ARKL   + + G  P   +Y
Sbjct: 155 HKVERACDVFEEMIRKGHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAY 214

Query: 353 NTLINSYSKIEKVEEALSLYGEM-------------------ISMGVRPDNSCILEAAEL 393
            +++    K  +++EA+    EM                   I MG       + EA  +
Sbjct: 215 TSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGK------VEEAFAV 268

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453
              + +     D   +   ++ L    R   A ++F+ +   G +P++ TY ++I   C 
Sbjct: 269 MEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCK 328

Query: 454 EGGIEKA------------------YDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEIT 495
           EG +  A                  Y ++ D   K     +A+EL  ++ K  + P  +T
Sbjct: 329 EGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVT 388

Query: 496 VSILEELLNKDENCHECMNLLPSFLSRNQE 525
            + +   L K +   E + LL     R +E
Sbjct: 389 YNTVINALCKLKKMDEALELLREMQRRKEE 418


>gi|293333312|ref|NP_001168014.1| uncharacterized protein LOC100381738 [Zea mays]
 gi|223945505|gb|ACN26836.1| unknown [Zea mays]
          Length = 462

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 107/395 (27%), Positives = 181/395 (45%), Gaps = 60/395 (15%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           PD  + N ++   C       A   +  ++R    P+ VT    IR  C  G    A  L
Sbjct: 5   PDTYTYNTVLKGLCCAKQWEQAEELMREMIRNSCHPNEVTFATQIRAFCQNGLLDRAVEL 64

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             +   + C     P+VI Y+++++G  + G V++   L   M  R   P+   YN+ ++
Sbjct: 65  LEQMPKYGC----TPDVIIYSTLVNGFSEHGRVDEALKLLNTMLCR---PNTVCYNAALK 117

Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
             C A  WE+         EL  E V  +      C P+  ++ ++INSLC++ LV+ A 
Sbjct: 118 GLCIAGRWEEVG-------ELIAEMVRKD------CPPNDATFSTLINSLCQNRLVEYAV 164

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           E+   M+  G +PDVV Y+++I  +    R DDA KL   ++S  C PDT S+N ++   
Sbjct: 165 EVLEQMQKYGYMPDVVSYNTIISCFSDQARADDALKL---LKSMLCKPDTISFNAVLKCL 221

Query: 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
            K ++  +A+ L  +M+    R                      ++   FN L+D LC++
Sbjct: 222 CKAKRWYDAVELVAKMLKKDCR----------------------INEMTFNILIDSLCQN 259

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI-----REC 474
            +++ A E+F+ +P+Y   P++VTY+ +I G   +G  E A+DL   M  +         
Sbjct: 260 GQVKDAIEVFELMPKYRCMPDIVTYSSLINGFSEQGLDEMAFDLFRSMPCRADIFSYNAT 319

Query: 475 LKAI----------ELLHKMAKRYVKPDEITVSIL 499
           LK +          EL+  M      P+E+T +IL
Sbjct: 320 LKGLCMAARWDDAGELIADMVTEDCLPNEVTFNIL 354



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 108/461 (23%), Positives = 198/461 (42%), Gaps = 64/461 (13%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           MI     P   +F + + A          + L E++   G  PD +  + L+N F +   
Sbjct: 33  MIRNSCHPNEVTFATQIRAFCQNGLLDRAVELLEQMPKYGCTPDVIIYSTLVNGFSEHGR 92

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
           V +A   L  +L +   P+ V     ++GLC+ G++ E   L  + V  DC PN      
Sbjct: 93  VDEALKLLNTMLCR---PNTVCYNAALKGLCIAGRWEEVGELIAEMVRKDCPPNDAT--- 146

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            ++++I+ LC++  V     +   M+  G  PD   YN++I  +         +     A
Sbjct: 147 -FSTLINSLCQNRLVEYAVEVLEQMQKYGYMPDVVSYNTIISCF-------SDQARADDA 198

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
           L+L +          ++C PD +S+ +++  LCK      A EL   M  +    + + +
Sbjct: 199 LKLLK---------SMLCKPDTISFNAVLKCLCKAKRWYDAVELVAKMLKKDCRINEMTF 249

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM-- 375
           + LID  C  G++ DA ++F  +    C+PD  +Y++LIN +S+    E A  L+  M  
Sbjct: 250 NILIDSLCQNGQVKDAIEVFELMPKYRCMPDIVTYSSLINGFSEQGLDEMAFDLFRSMPC 309

Query: 376 -------------ISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRL 422
                        + M  R D     +A EL   +       +   FN L+  LC+   +
Sbjct: 310 RADIFSYNATLKGLCMAARWD-----DAGELIADMVTEDCLPNEVTFNILISSLCQKGLV 364

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM--------------- 467
             A ++++++P+YG  P++ TY  +I G   +G ++ A   L  M               
Sbjct: 365 NRAIDVYEQMPKYGITPDIFTYNALINGYSEQGRLDDALKFLSTMPCEPDTISYNSILKG 424

Query: 468 ---EEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505
               E+ ++   A +L+ +M ++   P+E+T     +L  K
Sbjct: 425 LCRAERWKD---AEKLVTEMLRKNCTPNEVTFKYANQLFIK 462



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 151/311 (48%), Gaps = 56/311 (18%)

Query: 227 IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII 286
           + PD + YN++++  CCA  WE A+       EL  E +  +      CHP+ +++ + I
Sbjct: 3   VAPDTYTYNTVLKGLCCAKQWEQAE-------ELMREMIRNS------CHPNEVTFATQI 49

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
            + C++ L+D+A EL   M   G  PDV++YS+L++G+   GR+D+A KL  ++    C 
Sbjct: 50  RAFCQNGLLDRAVELLEQMPKYGCTPDVIIYSTLVNGFSEHGRVDEALKLLNTM---LCR 106

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406
           P+T  YN  +       + EE   L  EM+     P+++                     
Sbjct: 107 PNTVCYNAALKGLCIAGRWEEVGELIAEMVRKDCPPNDA--------------------- 145

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             F+ L++ LC++  +  A E+ +++ +YG  P+VV+Y  +I     +   + A  LL  
Sbjct: 146 -TFSTLINSLCQNRLVEYAVEVLEQMQKYGYMPDVVSYNTIISCFSDQARADDALKLLKS 204

Query: 467 MEEK--------IRECL-------KAIELLHKMAKRYVKPDEITVSILEELLNKD---EN 508
           M  K        + +CL        A+EL+ KM K+  + +E+T +IL + L ++   ++
Sbjct: 205 MLCKPDTISFNAVLKCLCKAKRWYDAVELVAKMLKKDCRINEMTFNILIDSLCQNGQVKD 264

Query: 509 CHECMNLLPSF 519
             E   L+P +
Sbjct: 265 AIEVFELMPKY 275



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 105/246 (42%), Gaps = 42/246 (17%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PD  +Y +++  LC     ++A+EL  +M      P+ V +++ I  +C  G +D A +L
Sbjct: 5   PDTYTYNTVLKGLCCAKQWEQAEELMREMIRNSCHPNEVTFATQIRAFCQNGLLDRAVEL 64

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396
              +   GC PD   Y+TL+N +S+  +V+EAL L   M+    RP+  C          
Sbjct: 65  LEQMPKYGCTPDVIIYSTLVNGFSEHGRVDEALKLLNTML---CRPNTVC---------- 111

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
                       +N  + GLC + R     EL  ++ R    PN  T++ +I  LC    
Sbjct: 112 ------------YNAALKGLCIAGRWEEVGELIAEMVRKDCPPNDATFSTLINSLCQNRL 159

Query: 457 IEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           +E A                 +E+L +M K    PD ++ + +    +      + + LL
Sbjct: 160 VEYA-----------------VEVLEQMQKYGYMPDVVSYNTIISCFSDQARADDALKLL 202

Query: 517 PSFLSR 522
            S L +
Sbjct: 203 KSMLCK 208


>gi|297605515|ref|NP_001057291.2| Os06g0249500 [Oryza sativa Japonica Group]
 gi|255676892|dbj|BAF19205.2| Os06g0249500 [Oryza sativa Japonica Group]
          Length = 690

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 113/415 (27%), Positives = 181/415 (43%), Gaps = 77/415 (18%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
           PDVVT G L+ GLC  G+  +A  +       D   ++ P+V+   +++DGLCK G V +
Sbjct: 170 PDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDL--DIRPDVVTLNTVVDGLCKSGRVQE 227

Query: 215 VRVLFLDMKGRGIY---PDAFVYNSLIRVYCCAVNWEDA--------------------- 250
             + F++ +   ++   P+   YN LI  +C   N   A                     
Sbjct: 228 A-LAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNT 286

Query: 251 -------KGNTSAALELHEE----FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
                   G T AALE   E    +  G G        + ++Y +++ +L     V  A 
Sbjct: 287 IVGGLCRAGRTGAALEFFREKRTVWPEGKG--------NAVTYSTLVGALLHTNNVGMAM 338

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           ELF +  S G  PD ++Y ++I G    GR++DA  +  S++  G   DT +YN LI  +
Sbjct: 339 ELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGF 398

Query: 360 SKIEKVEEALSLYGEMISMGVRPD---------NSC----ILEAAELFRTLHNTKFELDL 406
            + +++ EA  L  EM  +G+RPD          SC         EL   + +   +  +
Sbjct: 399 CRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSV 458

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             F  LV G CK  ++  A  + + +   G  PN V Y  +I  LC  G ++ A +L  +
Sbjct: 459 ITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDE 518

Query: 467 MEEK---------------IRE---CLKAIELLHKMAKRYVKPDEITVSILEELL 503
           M+EK               +R+     KA EL+ +M +    PD +TV +L E L
Sbjct: 519 MKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREERCFPDYVTVDVLMEWL 573



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 103/216 (47%), Gaps = 23/216 (10%)

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKS-RGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           DV ++ SI+ +L +   V     ++  M+    + PDVV Y  L++G C  GR+ DA ++
Sbjct: 135 DVFAFNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRV 194

Query: 337 F--VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS--MGVRPDN---SCILE 389
              +S +     PD  + NT+++   K  +V+EAL+   + +S   G  P+    +C+++
Sbjct: 195 LDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLID 254

Query: 390 ----------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE- 438
                     A EL   + N     ++   N +V GLC++ R  +A E F++     PE 
Sbjct: 255 AFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEG 314

Query: 439 -PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
             N VTY+ ++  L     +  A +L     EK+ E
Sbjct: 315 KGNAVTYSTLVGALLHTNNVGMAMELF---HEKMSE 347



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 113/275 (41%), Gaps = 17/275 (6%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++++L+GAL         + L     + G  PD +    +++   +   + DA      +
Sbjct: 320 TYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSM 379

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
               F  D      LI G C + +  EA  L  +      RP+V      Y +++ G CK
Sbjct: 380 KEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVC----TYNTLLSGSCK 435

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
            G    V  L   M   G  P    + +L+  YC         G    AL +    +   
Sbjct: 436 AGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYC-------KVGKIDEALRI----LRSM 484

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
            E G+  HP+ + Y ++I+ LCK   VD A ELF +MK + +  +V  +++L+ G     
Sbjct: 485 DESGI--HPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKN 542

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
             + A +L   +  E C PD  + + L+     IE
Sbjct: 543 MPEKAFELMDQMREERCFPDYVTVDVLMEWLPVIE 577



 Score = 40.4 bits (93), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 25/130 (19%)

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMIS-MGVRPDNSCILEAAELFRTLHNTKFELDL 406
           D  ++N+++ + +++  V     +Y  M     VRPD                      +
Sbjct: 135 DVFAFNSILAALARVRDVPGMARIYALMQGCASVRPD----------------------V 172

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE--PNVVTYTVMICGLCIEGGIEKAYDLL 464
             +  LV+GLCK+ R+  A  +   + R   +  P+VVT   ++ GLC  G +++A   +
Sbjct: 173 VTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFV 232

Query: 465 PDMEEKIREC 474
                 +  C
Sbjct: 233 EQRMSSVHGC 242


>gi|222422989|dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
          Length = 536

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 107/392 (27%), Positives = 179/392 (45%), Gaps = 57/392 (14%)

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
           +N L+N   K+  V DA       LR     D  T   LIRGLC  GK  +A  L     
Sbjct: 174 VNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMS 233

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK-GRGIYPDAFVYNSLIRVYCC 243
            F C P+++     Y ++I G CK   +NK   +F D+K G    PD   Y S+I  YC 
Sbjct: 234 GFGCEPDIVT----YNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCK 289

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
           A       G    A  L ++ +     LG+  +P  +++  +++   K   +  A+E+  
Sbjct: 290 A-------GKMREASSLLDDML----RLGI--YPTNVTFNVLVDGYAKAGEMLTAEEIRG 336

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            M S G  PDVV ++SLIDGYC +G++    +L+  + + G  P+  +Y+ LIN+     
Sbjct: 337 KMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNEN 396

Query: 364 KVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLR 423
           ++ +A  L G++ S  + P                         ++N ++DG CK+ ++ 
Sbjct: 397 RLLKARELLGQLASKDIIPQP----------------------FMYNPVIDGFCKAGKVN 434

Query: 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHK 483
            A  + +++ +   +P+ +T+T++I G C++G +                  +A+ + HK
Sbjct: 435 EANVIVEEMEKKKCKPDKITFTILIIGHCMKGRM-----------------FEAVSIFHK 477

Query: 484 MAKRYVKPDEITVSILEELLNKDENCHECMNL 515
           M      PD+ITVS L   L K     E  +L
Sbjct: 478 MVAIGCSPDKITVSSLLSCLLKAGMAKEAYHL 509



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 157/340 (46%), Gaps = 25/340 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            + DA+  F+  +  Q      +FN L+  L G       + L   ++  G  PD V+ N
Sbjct: 186 RVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYN 245

Query: 127 ILMNCFCKMIGVSDAFVALGRILR-KVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
            L+  FCK   ++ A      +    V SPDVVT   +I G C  GK  EAS L    + 
Sbjct: 246 TLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDML- 304

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
              R  + P  + +  ++DG  K G +     +   M   G +PD   + SLI  YC   
Sbjct: 305 ---RLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYC--- 358

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
                 G  S    L EE +N  G       P+  +Y  +IN+LC +  + KA+EL   +
Sbjct: 359 ----RVGQVSQGFRLWEE-MNARGMF-----PNAFTYSILINALCNENRLLKARELLGQL 408

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
            S+ IIP   +Y+ +IDG+C  G++++A  +   +E + C PD  ++  LI  +    ++
Sbjct: 409 ASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRM 468

Query: 366 EEALSLYGEMISMGVRPDN-------SCILEAAELFRTLH 398
            EA+S++ +M+++G  PD        SC+L+A       H
Sbjct: 469 FEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYH 508



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 113/252 (44%), Gaps = 36/252 (14%)

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV-S 339
           +Y  +  SLCK  L D A ++F  MKS G+ P+  +   L+  +   G++  A  L + S
Sbjct: 105 TYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQS 164

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC--IL--------- 388
            E EGC       N+L+N+  K+++VE+A+ L+ E +      D     IL         
Sbjct: 165 FEVEGC---CMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGK 221

Query: 389 --EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP-EPNVVTYT 445
             +A EL   +     E D+  +N L+ G CKS  L  A E+FK +       P+VVTYT
Sbjct: 222 AEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYT 281

Query: 446 VMICGLCIEGGIEKAYDLLPDM------------------EEKIRECLKAIELLHKMAKR 487
            MI G C  G + +A  LL DM                    K  E L A E+  KM   
Sbjct: 282 SMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISF 341

Query: 488 YVKPDEITVSIL 499
              PD +T + L
Sbjct: 342 GCFPDVVTFTSL 353



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 102/235 (43%), Gaps = 17/235 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++ +A    + M+ +   P   +FN L+   A     +    +  ++ + G  PD V+  
Sbjct: 292 KMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFT 351

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ +C++  VS  F     +  +   P+  T   LI  LC + +  +A  L  +  + 
Sbjct: 352 SLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASK 411

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           D    +IP    Y  +IDG CK G VN+  V+  +M+ +   PD   +  LI  +C    
Sbjct: 412 D----IIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHC---- 463

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
               KG    A+ +  + V       + C PD ++  S+++ L K  +  +A  L
Sbjct: 464 ---MKGRMFEAVSIFHKMV------AIGCSPDKITVSSLLSCLLKAGMAKEAYHL 509


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 128/508 (25%), Positives = 213/508 (41%), Gaps = 85/508 (16%)

Query: 90  FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149
           F +L+ ALA +    + + L + +    L PD V  N+ ++CF K   V  A+     + 
Sbjct: 217 FTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELK 276

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP------------------- 190
            +   PD V+   +I  LC  G+  EA  LF +  A    P                   
Sbjct: 277 AQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFE 336

Query: 191 ------------NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
                         IP+V+ + SI+  L K   V++   LF  MK +   P++  YN +I
Sbjct: 337 DAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMK-KDAEPNSSTYNIII 395

Query: 239 RVYCCAVNWEDAK----------------------GNTSAALELHEEFVNGNGELGVICH 276
            + C     E+A                            A +L E +          C+
Sbjct: 396 DMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCN 455

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PD ++YCS+I+ L K   VD+A  LF  M   G   + VVY+SLI  + + GR +D  K+
Sbjct: 456 PDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKI 515

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--NSCIL------ 388
           F  +   GC PD +  NT ++   K  +VE+   ++ ++ S G  PD  +  IL      
Sbjct: 516 FKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTK 575

Query: 389 -----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                E + +F  +    F LD   +N +VDG CKS ++  A+E+ +++     +P V T
Sbjct: 576 AGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVAT 635

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMA 485
           Y  ++ GL     +++AY L  + +                   K+    +A  +L +M 
Sbjct: 636 YGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMM 695

Query: 486 KRYVKPDEITVSILEELLNKDENCHECM 513
           K+ + P+  T + L + L K E  +E +
Sbjct: 696 KKGLTPNVYTWNSLLDALVKAEEINEAL 723



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 111/433 (25%), Positives = 188/433 (43%), Gaps = 68/433 (15%)

Query: 63  SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF 122
            G VE  +A    + M H    P + + N ++  L   +       + E  +  G  PD 
Sbjct: 401 GGRVE--EAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDC 458

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           V+   L++   K   V +A+    ++L    + + V    LIR   + G+  +   +F +
Sbjct: 459 VTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKE 518

Query: 183 FVAFDCRPNV-------------------------------IPNVICYASIIDGLCKDGF 211
            +   C+P++                               +P+V  Y+ +I GL K G 
Sbjct: 519 LIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQ 578

Query: 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGEL 271
             +   +F  MK +G   DA  YN+++  +C         G    A E+ EE        
Sbjct: 579 ARETSNIFHAMKQQGFALDARAYNAVVDGFC-------KSGKVHKAYEILEEMKEK---- 627

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
                P V +Y +I++ L K   +D+A  LF + KS+GI  +VV+YSSLIDG+  +GRID
Sbjct: 628 --CVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRID 685

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAA 391
           +A  +   +  +G  P+  ++N+L+++  K E++ EAL  +  M  M   P+        
Sbjct: 686 EAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNT------- 738

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
                            ++ L++GLC+  +   A+  ++ + + G  PNVVTYT MI GL
Sbjct: 739 ---------------YTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGL 783

Query: 452 CIEGGIEKAYDLL 464
              G I  AY L 
Sbjct: 784 AKVGNITDAYSLF 796



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 119/514 (23%), Positives = 215/514 (41%), Gaps = 76/514 (14%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L +A   F  M   +  P   ++N+++        + +   L ERL   G +P  VS N 
Sbjct: 300 LGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNS 359

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++ C  K   V +A ++L  +++K   P+  T   +I  LC+ G+  EA  +  +     
Sbjct: 360 ILTCLGKKRKVDEA-LSLFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHAS 418

Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
             PN++                               P+ + Y S+IDGL K G V++  
Sbjct: 419 LFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAY 478

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            LF  M   G   +  VY SLIR +      ED         ++ +E +         C 
Sbjct: 479 RLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGH-------KIFKELIRRG------CK 525

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PD+    + ++ + K   V+K + +F D++S G +PDV  YS LI G    G+  +   +
Sbjct: 526 PDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNI 585

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC---------- 386
           F +++ +G   D  +YN +++ + K  KV +A  +  EM    V+P  +           
Sbjct: 586 FHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAK 645

Query: 387 ---ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
              + EA  LF    +   EL++ +++ L+DG  K  R+  A+ + +++ + G  PNV T
Sbjct: 646 IDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYT 705

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMA 485
           +  ++  L     I +A      M+E                  ++++  KA      M 
Sbjct: 706 WNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQ 765

Query: 486 KRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519
           K+ + P+ +T + +   L K  N  +  +L   F
Sbjct: 766 KQGLVPNVVTYTTMISGLAKVGNITDAYSLFERF 799



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 160/345 (46%), Gaps = 35/345 (10%)

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF--VAFDCRPNVIPN 195
           + DA +A+  + R  F P       LI  L    +   A  L  +   V ++        
Sbjct: 160 LDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEV------G 213

Query: 196 VICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTS 255
           V  + +++  L ++G V     L  ++KG  + PD  +YN  I  +  A       GN  
Sbjct: 214 VHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKA-------GNVD 266

Query: 256 AALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV 315
            A +   E +   G       PD +SY S+I  LCK   + +A+ELF  M++   +P   
Sbjct: 267 MAWKFFHE-LKAQG-----LKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAY 320

Query: 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
            Y+++I GY   GR +DA KL   +   GCIP   S+N+++    K  KV+EALSL+ E+
Sbjct: 321 AYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLF-EV 379

Query: 376 ISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRL 422
           +     P++S              + EA  +   + +     +L   N +VD LCK+ +L
Sbjct: 380 MKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKL 439

Query: 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
             A+++F+   + G  P+ VTY  +I GL  +G +++AY L   M
Sbjct: 440 EEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKM 484



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 133/272 (48%), Gaps = 18/272 (6%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G   D  + N +++ FCK   V  A+  L  +  K   P V T G ++ GL    +  EA
Sbjct: 593 GFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEA 652

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             LF +  +      +  NV+ Y+S+IDG  K G +++  ++  +M  +G+ P+ + +NS
Sbjct: 653 YMLFEEAKS----KGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNS 708

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           L+                  A E++E  V       + C P+  +Y  +IN LC+    +
Sbjct: 709 LLDALV-------------KAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYN 755

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           KA   + DM+ +G++P+VV Y+++I G   +G I DA  LF   ++ G IPD +S+N LI
Sbjct: 756 KAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALI 815

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD-NSCI 387
              S   +  EA  ++ E    G R +  SCI
Sbjct: 816 EGMSNANRAMEAYQVFEETRLRGCRINIKSCI 847



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 108/479 (22%), Positives = 191/479 (39%), Gaps = 87/479 (18%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L+DA+     M  ++  P   ++  L+GALA  +     + L  ++  +G          
Sbjct: 160 LDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTT 219

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+    +   V+DA   +  +      PD+V     I      G    A   F +  A  
Sbjct: 220 LVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKA-- 277

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               + P+ + Y S+I  LCK G + +   LF  M+     P A+ YN++I  Y  A  +
Sbjct: 278 --QGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRF 335

Query: 248 EDA----------------------------KGNTSAALELHEEFVNGNGELGVICHPDV 279
           EDA                            K     AL L  E +  + E      P+ 
Sbjct: 336 EDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLF-EVMKKDAE------PNS 388

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
            +Y  II+ LC    V++A  +  +M+   + P+++  + ++D  C   ++++A K+F S
Sbjct: 389 STYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFES 448

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSL---------------------------- 371
               GC PD  +Y +LI+   K  +V+EA  L                            
Sbjct: 449 ASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGR 508

Query: 372 -------YGEMISMGVRPDNS-------CILEAAE------LFRTLHNTKFELDLTVFNC 411
                  + E+I  G +PD +       C+ +A E      +F  + +  F  D+  ++ 
Sbjct: 509 KEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSI 568

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           L+ GL K+ + R    +F  + + G   +   Y  ++ G C  G + KAY++L +M+EK
Sbjct: 569 LIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEK 627



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 67/310 (21%), Positives = 118/310 (38%), Gaps = 65/310 (20%)

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
            P   +Y  +I +L +    ++A EL   M+  G    V ++++L+      G++ DA  
Sbjct: 176 RPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALA 235

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC--------- 386
           L   ++     PD   YN  I+ + K   V+ A   + E+ + G++PD+           
Sbjct: 236 LVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLC 295

Query: 387 ----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG------ 436
               + EA ELF  +   +       +N ++ G   + R   A++L ++L   G      
Sbjct: 296 KAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVV 355

Query: 437 ----------------------------PEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
                                        EPN  TY ++I  LC+ G +E+AY +L +ME
Sbjct: 356 SFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEME 415

Query: 469 E------------------KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCH 510
                              K R+  +A ++    ++R   PD +T   L + L K     
Sbjct: 416 HASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVD 475

Query: 511 ECMNLLPSFL 520
           E   L    L
Sbjct: 476 EAYRLFEKML 485



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 13/153 (8%)

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG--------- 379
           R+DDA      +      P  S+Y  LI + ++  + E AL L  +M  +G         
Sbjct: 159 RLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFT 218

Query: 380 --VRP--DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
             VR       + +A  L   +  +  E D+ ++N  +D   K+  +  AW+ F +L   
Sbjct: 219 TLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQ 278

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           G +P+ V+YT MI  LC  G + +A +L   ME
Sbjct: 279 GLKPDDVSYTSMIWVLCKAGRLGEAEELFAQME 311


>gi|302816541|ref|XP_002989949.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
 gi|300142260|gb|EFJ08962.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
          Length = 447

 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 117/416 (28%), Positives = 186/416 (44%), Gaps = 43/416 (10%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           + AL  F  ++     P   ++N L+            + +   + + GLLP+  ++N L
Sbjct: 7   DQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTL 66

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           +   C++  +S A      +    F P   +   L+RG  M G+  E    F +  A   
Sbjct: 67  LLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRAIE---FFKEMKA--- 120

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
              V P++  Y  ++  L   G + +   LF  M      PD   YN L+  YC      
Sbjct: 121 -SGVEPDLESYHILLSALSDSGRMAEAHALFSAMT---CSPDIMTYNVLMDGYC------ 170

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
              G T  A  L +E +    E      P+V +Y  IIN  CK   V++A E+F+ M   
Sbjct: 171 -KIGQTYEAQSLMKEILKAGYE------PNVFTYSIIINCYCKLDKVEEAWEVFMKMIES 223

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE-KVEE 367
             +P+ V +++LI G+C  G ++DA KLF  +E  GC     +YNTLI+S  K    V  
Sbjct: 224 NCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYT 283

Query: 368 ALSLYGEMISMGVRPD----NSCILEAAE-------LFRTLHNTKFELDLTVFNCLVDGL 416
           A+ L+ ++   G+ P     NS I   +E       L   +H    + D+  +NCL+ GL
Sbjct: 284 AVDLFNKLEGAGLTPTIVTYNSLIQGFSERANDGLRLLCHMHAEGCKPDVITYNCLISGL 343

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL-----PDM 467
           C + R+  A  LF  +      PNV T+  +I GLC +  +E+A ++L     PDM
Sbjct: 344 CSANRVEDAQRLFNGM---ACAPNVTTFNFLIRGLCAQKKVEEARNILDRMTAPDM 396



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 108/398 (27%), Positives = 180/398 (45%), Gaps = 44/398 (11%)

Query: 67  ELNDALCFFNYMIHMQPTPFMP---SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV 123
           +++ AL  F     MQ  PF+P   S N LL         + F    + +   G+ PD  
Sbjct: 75  QMSSALKLFR---EMQAGPFLPTSASHNILLRGFFMAGRAIEFF---KEMKASGVEPDLE 128

Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           S +IL++       +++A      +     SPD++T   L+ G C  G+  EA  L  + 
Sbjct: 129 SYHILLSALSDSGRMAEAHALFSAM---TCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEI 185

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
           +    +    PNV  Y+ II+  CK   V +   +F+ M      P+A  +N+LI  +C 
Sbjct: 186 L----KAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCK 241

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL-VDKAKELF 302
           A   EDA       ++L  E         + C   +++Y ++I+SLCK    V  A +LF
Sbjct: 242 AGMLEDA-------IKLFAEMEK------IGCKATIVTYNTLIDSLCKKRGGVYTAVDLF 288

Query: 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362
             ++  G+ P +V Y+SLI G+    R +D  +L   + +EGC PD  +YN LI+     
Sbjct: 289 NKLEGAGLTPTIVTYNSLIQGFS--ERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSA 346

Query: 363 EKVEEALSLYGEMISMGVRPDNS---------CILEAAELFRTLHNTKFELDLTVFNCLV 413
            +VE+A  L+     M   P+ +         C  +  E  R + +     D+T FN ++
Sbjct: 347 NRVEDAQRLFN---GMACAPNVTTFNFLIRGLCAQKKVEEARNILDRMTAPDMTTFNTII 403

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
              CK+  +  A E+ K + ++G  PN  T   +  G+
Sbjct: 404 LAFCKAGAMHDAREVMKDMLKHGFYPNTYTTYALAHGI 441



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 125/276 (45%), Gaps = 41/276 (14%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           PN   Y  +I G CK G +++   +F DMK  G+ P+A   N+L+   C         G 
Sbjct: 23  PNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLC-------EIGQ 75

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
            S+AL+L  E   G         P   S+  ++       +  +A E F +MK+ G+ PD
Sbjct: 76  MSSALKLFREMQAGP------FLPTSASHNILLRGF---FMAGRAIEFFKEMKASGVEPD 126

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           +  Y  L+      GR+ +A  LF ++    C PD  +YN L++ Y KI +  EA SL  
Sbjct: 127 LESYHILLSALSDSGRMAEAHALFSAMT---CSPDIMTYNVLMDGYCKIGQTYEAQSLMK 183

Query: 374 EMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
           E++  G  P+                      +  ++ +++  CK  ++  AWE+F K+ 
Sbjct: 184 EILKAGYEPN----------------------VFTYSIIINCYCKLDKVEEAWEVFMKMI 221

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
                PN VT+  +I G C  G +E A  L  +ME+
Sbjct: 222 ESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEK 257



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 97/219 (44%), Gaps = 48/219 (21%)

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
           D+A  LF ++ +    P+   Y+ LI G+C  G++  A  +F  ++S G +P+ S+ NTL
Sbjct: 7   DQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTL 66

Query: 356 INSYSKIEKVEEALSL--------------------------------YGEMISMGVRP- 382
           +    +I ++  AL L                                + EM + GV P 
Sbjct: 67  LLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRAIEFFKEMKASGVEPD 126

Query: 383 ------------DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
                       D+  + EA  LF  +  +    D+  +N L+DG CK  +   A  L K
Sbjct: 127 LESYHILLSALSDSGRMAEAHALFSAMTCSP---DIMTYNVLMDGYCKIGQTYEAQSLMK 183

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           ++ + G EPNV TY+++I   C    +E+A+++   M E
Sbjct: 184 EILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIE 222


>gi|108862162|gb|ABA95747.2| Cytochrome P450 family protein [Oryza sativa Japonica Group]
          Length = 1595

 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 165/387 (42%), Gaps = 33/387 (8%)

Query: 81   MQPTPFMPS---FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
            M+   F+P+   + SL+  L  K        L   +   G  P+    N +++  C    
Sbjct: 1039 METNGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCNCRS 1098

Query: 138  VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
             + A V L ++      PD++T   LI GLC +G   +A      F+    R  + PN +
Sbjct: 1099 ATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAE----HFLREAIRRELNPNQL 1154

Query: 198  CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
             Y  +I G C  G +     L ++M GRG  PD   + +LI     A       G  S A
Sbjct: 1155 SYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLVVA-------GKVSEA 1207

Query: 258  LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
            L + E+             PDV  Y  +I+ LCK  ++  AK +  +M  + + PD  VY
Sbjct: 1208 LIVREKMTERQ------VFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVY 1261

Query: 318  SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
            ++LIDG+     + DARK+F  +E +G  PD  S N +I  Y +   + EA+     M  
Sbjct: 1262 ATLIDGFIRSENLGDARKIFEFMEHKGVCPDIVSCNAMIKGYCQFGMMSEAILCMSNMRK 1321

Query: 378  MGVRPDNSCILEAAELFRTLHNTKFEL-------------DLTVFNCLVDGLCKSWRLRS 424
            +G  PD          +    N    L             ++  ++ L++G CK+    S
Sbjct: 1322 VGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDS 1381

Query: 425  AWELFKKLPRYGPEPNVVTYTVMICGL 451
            A  LF  +      PNVVTYT++I  L
Sbjct: 1382 AEGLFANMQAEALSPNVVTYTILIGSL 1408



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 118/479 (24%), Positives = 194/479 (40%), Gaps = 76/479 (15%)

Query: 84   TPFMPSFNSLLGALAGKKYYVNFICLSERLN-TIGLLPDFVSLNILMNCFCKMIGVSDAF 142
             P      +L+ A A          + ER+    G LP+    N L+    +     DA 
Sbjct: 904  APTRACLGALVAAYADAGMLGKATEMCERVREQYGSLPEVTHCNRLLKLLVEQRRWDDAR 963

Query: 143  VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI--------- 193
                 +L K    D  +   L+RGLC++ +  E   L        C P+V+         
Sbjct: 964  KLYDEMLGKDSGADNYSTCVLVRGLCLERRVEEGLKLIEARWGAGCIPHVVFYNVLIDGY 1023

Query: 194  ----------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
                                  P ++ Y S+I+ L K G + K+  LFL+M+ RG  P+ 
Sbjct: 1024 CRRGDMGRGLLLLGEMETNGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNV 1083

Query: 232  FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
             +YNS+I   C      + +  T A + L + F +G       C PD++++ ++I  LC 
Sbjct: 1084 QIYNSVIDALC------NCRSATQAMVILKQMFASG-------CDPDIITFNTLITGLCH 1130

Query: 292  DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
            +  V KA+    +   R + P+ + Y+ LI G+C+ G +  A  L V +   G  PD  +
Sbjct: 1131 EGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVT 1190

Query: 352  YNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------NSCILEAAE-LFRTLH 398
            +  LI+      KV EAL +  +M    V PD               +L AA+ +   + 
Sbjct: 1191 FGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILEEML 1250

Query: 399  NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
                + D  V+  L+DG  +S  L  A ++F+ +   G  P++V+   MI G C  G + 
Sbjct: 1251 EKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVCPDIVSCNAMIKGYCQFGMMS 1310

Query: 459  KAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
            +A   + +M +                  K      A+  L  M KR  KP+ +T S L
Sbjct: 1311 EAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSL 1369



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 112/435 (25%), Positives = 181/435 (41%), Gaps = 55/435 (12%)

Query: 69   NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
              A+     M      P + +FN+L+  L  + +               L P+ +S   L
Sbjct: 1100 TQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPL 1159

Query: 129  MNCFC---KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
            ++ FC   +++  SD  V +   + +  +PDVVT G LI GL + GK +EA  +  K   
Sbjct: 1160 IHGFCMRGELMVASDLLVEM---MGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMT- 1215

Query: 186  FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
                  V P+V  Y  +I GLCK   +   + +  +M  + + PD FVY +LI  +  + 
Sbjct: 1216 ---ERQVFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSE 1272

Query: 246  NWEDAKGNTSAALELHEE------------FVNGNGELGVI--------------CHPDV 279
            N  DA+       E  E              + G  + G++              C PD 
Sbjct: 1273 NLGDAR----KIFEFMEHKGVCPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDE 1328

Query: 280  LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
             +Y ++I+   K   ++ A     DM  R   P+VV YSSLI+GYC  G  D A  LF +
Sbjct: 1329 FTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFAN 1388

Query: 340  IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN 399
            +++E   P+  +Y  LI S  K +KV  A   +  M+     P++           TLH 
Sbjct: 1389 MQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDV----------TLHY 1438

Query: 400  TKFELDLTVFNCLVDGLC----KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
                L  +   C+++ +C    +     +   +FKKL     +P    Y  +I  LC   
Sbjct: 1439 LVNGLT-SCTPCVINSICCNTSEVHGKDALLVVFKKLVFDIGDPRNSAYNAIIFSLCRHN 1497

Query: 456  GIEKAYDLLPDMEEK 470
             + +A D    M +K
Sbjct: 1498 MLREALDFKNRMAKK 1512



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 153/367 (41%), Gaps = 51/367 (13%)

Query: 194  PNVICYASIIDGLCKDGFVNKVRVLFLDMKGR-GIYPDAFVYNSLIRVYCCAVNWEDAKG 252
            P   C  +++      G + K   +   ++ + G  P+    N L+++      W+DA+ 
Sbjct: 905  PTRACLGALVAAYADAGMLGKATEMCERVREQYGSLPEVTHCNRLLKLLVEQRRWDDAR- 963

Query: 253  NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
                  +L++E       LG     D  S C ++  LC +  V++  +L       G IP
Sbjct: 964  ------KLYDEM------LGKDSGADNYSTCVLVRGLCLERRVEEGLKLIEARWGAGCIP 1011

Query: 313  DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
             VV Y+ LIDGYC  G +     L   +E+ G +P   +Y +LIN   K   +E+  SL+
Sbjct: 1012 HVVFYNVLIDGYCRRGDMGRGLLLLGEMETNGFLPTLVTYGSLINWLGKKGDLEKIGSLF 1071

Query: 373  GEMISMGVRPD----NSCI---------LEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
             EM   G  P+    NS I          +A  + + +  +  + D+  FN L+ GLC  
Sbjct: 1072 LEMRKRGFSPNVQIYNSVIDALCNCRSATQAMVILKQMFASGCDPDIITFNTLITGLCHE 1131

Query: 420  WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM------------ 467
              +R A    ++  R    PN ++YT +I G C+ G +  A DLL +M            
Sbjct: 1132 GHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTF 1191

Query: 468  ---------EEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPS 518
                       K+ E L   E   KM +R V PD    ++L   L K        N+L  
Sbjct: 1192 GALIHGLVVAGKVSEALIVRE---KMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILEE 1248

Query: 519  FLSRNQE 525
             L +N +
Sbjct: 1249 MLEKNVQ 1255



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 131/332 (39%), Gaps = 32/332 (9%)

Query: 67   ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            ++++AL     M   Q  P +  +N L+  L  K+       + E +    + PD     
Sbjct: 1203 KVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYA 1262

Query: 127  ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
             L++ F +   + DA      +  K   PD+V+   +I+G C  G  +EA    +     
Sbjct: 1263 TLIDGFIRSENLGDARKIFEFMEHKGVCPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKV 1322

Query: 187  DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             C    IP+   Y ++I G  K G +N       DM  R   P+   Y+SLI  YC    
Sbjct: 1323 GC----IPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYC---- 1374

Query: 247  WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                 G+T +A  L   F N   E      P+V++Y  +I SL K   V +A   F  M 
Sbjct: 1375 ---KTGDTDSAEGL---FANMQAE---ALSPNVVTYTILIGSLFKKDKVLRAGLYFETML 1425

Query: 307  SRGIIPDVVVYSSLIDGY-----CLMGRI----------DDARKLFVSIESEGCIPDTSS 351
                 P+ V    L++G      C++  I          D    +F  +  +   P  S+
Sbjct: 1426 LNHCSPNDVTLHYLVNGLTSCTPCVINSICCNTSEVHGKDALLVVFKKLVFDIGDPRNSA 1485

Query: 352  YNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            YN +I S  +   + EAL     M   G  P+
Sbjct: 1486 YNAIIFSLCRHNMLREALDFKNRMAKKGYVPN 1517



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 124/285 (43%), Gaps = 32/285 (11%)

Query: 68   LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSE------RLNTIGLLPD 121
            L DA   F +M H    P + S N+++      K Y  F  +SE       +  +G +PD
Sbjct: 1274 LGDARKIFEFMEHKGVCPDIVSCNAMI------KGYCQFGMMSEAILCMSNMRKVGCIPD 1327

Query: 122  FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
              +   +++ + K   ++ A   L  ++++   P+VVT   LI G C  G    A GLF 
Sbjct: 1328 EFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFA 1387

Query: 182  KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD----AFVYNSL 237
               A      + PNV+ Y  +I  L K   V +  + F  M      P+     ++ N L
Sbjct: 1388 NMQA----EALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGL 1443

Query: 238  IRVYCCAVN-----WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
                 C +N       +  G   A L + ++ V   G+      P   +Y +II SLC+ 
Sbjct: 1444 TSCTPCVINSICCNTSEVHGK-DALLVVFKKLVFDIGD------PRNSAYNAIIFSLCRH 1496

Query: 293  VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
             ++ +A +    M  +G +P+ + + SL+ G+C +G+  + R + 
Sbjct: 1497 NMLREALDFKNRMAKKGYVPNPITFLSLLYGFCSVGKSVNWRTIL 1541


>gi|356547426|ref|XP_003542113.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Glycine max]
          Length = 825

 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 111/415 (26%), Positives = 177/415 (42%), Gaps = 66/415 (15%)

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
           +P  V  N++++ +CK   +  A  AL  +  K   P V T G LI G C  G+F     
Sbjct: 237 VPHVVFYNMIIDGYCKKGDLQCATRALNELKMKGVLPTVETYGALINGFCKAGEFEAVDQ 296

Query: 179 LFTKFVAFDCRPNVI-------------------------------PNVICYASIIDGLC 207
           L T+  A     NV                                P++  Y  +I+  C
Sbjct: 297 LLTEMAARGLNMNVKVFNNVIDAEYKYGLVTEAAEMLRRMAEMGCGPDITTYNIMINFSC 356

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE---- 263
           K G + +   L    K RG+ P+ F Y  L+  YC   ++  A G      E+ E+    
Sbjct: 357 KGGRIEEADELLEKAKERGLLPNKFSYTPLMHAYCKKGDYVKASGMLFRIAEIGEKSDLV 416

Query: 264 ----FVNG---NGELGVI-----------CHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
               F++G    GE+ V              PD   Y  +++ LCK   +   K L  +M
Sbjct: 417 SYGAFIHGVVVAGEIDVALMVREKMMEKGVFPDAQIYNILMSGLCKKGRIPAMKLLLSEM 476

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
             R + PDV V+++LIDG+   G +D+A K+F  I  +G  P    YN +I  + K  K+
Sbjct: 477 LDRNVQPDVYVFATLIDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKM 536

Query: 366 EEALSLYGEMISMGVRPDN---SCILE----------AAELFRTLHNTKFELDLTVFNCL 412
            +ALS   EM S+   PD    S +++          A ++F  +   KF+ ++  +  L
Sbjct: 537 TDALSCLNEMNSVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSL 596

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           ++G CK   +  A ++F  +  +   PNVVTYT ++ G    G  E+A  +   M
Sbjct: 597 INGFCKKADMIRAEKVFSGMKSFDLVPNVVTYTTLVGGFFKAGKPERATSIFELM 651



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 117/478 (24%), Positives = 195/478 (40%), Gaps = 64/478 (13%)

Query: 80  HMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI-GLLPDFVSLNILMNCFCKMIGV 138
           H++PT    +F++L+ A A        + L   +  +    P FV+ N+L+N   K   V
Sbjct: 125 HLKPTR--EAFSALILAYAESGSLDRALQLFHTVREMHNCFPTFVASNLLLNGLVKSGKV 182

Query: 139 SDAFVALGRILRKVFSPDVV----TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
             A     ++L+       V    T   +++GLC  GK  E   L        C    +P
Sbjct: 183 DVALQLYDKMLQTDDGTGAVVDNYTTSIMVKGLCNLGKIEEGRRLIKHRWGKCC----VP 238

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED----- 249
           +V+ Y  IIDG CK G +        ++K +G+ P    Y +LI  +C A  +E      
Sbjct: 239 HVVFYNMIIDGYCKKGDLQCATRALNELKMKGVLPTVETYGALINGFCKAGEFEAVDQLL 298

Query: 250 ---AKGNTSAALELHEEFVNGNGELGVI--------------CHPDVLSYCSIINSLCKD 292
              A    +  +++    ++   + G++              C PD+ +Y  +IN  CK 
Sbjct: 299 TEMAARGLNMNVKVFNNVIDAEYKYGLVTEAAEMLRRMAEMGCGPDITTYNIMINFSCKG 358

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             +++A EL    K RG++P+   Y+ L+  YC  G    A  +   I   G   D  SY
Sbjct: 359 GRIEEADELLEKAKERGLLPNKFSYTPLMHAYCKKGDYVKASGMLFRIAEIGEKSDLVSY 418

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHN 399
              I+      +++ AL +  +M+  GV PD                I     L   + +
Sbjct: 419 GAFIHGVVVAGEIDVALMVREKMMEKGVFPDAQIYNILMSGLCKKGRIPAMKLLLSEMLD 478

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
              + D+ VF  L+DG  ++  L  A ++FK + R G +P +V Y  MI G C  G +  
Sbjct: 479 RNVQPDVYVFATLIDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTD 538

Query: 460 AYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           A   L +M                    K  +   A+++  +M K   KP+ IT + L
Sbjct: 539 ALSCLNEMNSVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSL 596



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 165/353 (46%), Gaps = 33/353 (9%)

Query: 107 ICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166
           + + E++   G+ PD    NILM+  CK   +    + L  +L +   PDV     LI G
Sbjct: 435 LMVREKMMEKGVFPDAQIYNILMSGLCKKGRIPAMKLLLSEMLDRNVQPDVYVFATLIDG 494

Query: 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
               G+  EA  +F   +    R  V P ++ Y ++I G CK G +        +M    
Sbjct: 495 FIRNGELDEAIKIFKVII----RKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNEMNSVH 550

Query: 227 IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII 286
             PD + Y+++I  Y         + + S+AL++  + +    +      P+V++Y S+I
Sbjct: 551 HAPDEYTYSTVIDGYV-------KQHDMSSALKMFGQMMKHKFK------PNVITYTSLI 597

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           N  CK   + +A+++F  MKS  ++P+VV Y++L+ G+   G+ + A  +F  +   GC+
Sbjct: 598 NGFCKKADMIRAEKVFSGMKSFDLVPNVVTYTTLVGGFFKAGKPERATSIFELMLMNGCL 657

Query: 347 PDTSSYNTLINSYSKIEK----VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF 402
           P+ ++++ LIN  +        +EE  S   E          S IL   + F  +    +
Sbjct: 658 PNDATFHYLINGLTNTATSPVLIEEKDSKENE---------RSLIL---DFFTMMLLDGW 705

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
           +  +  +N ++  LCK   + +A  L  K+   G   + V +T ++ GLC +G
Sbjct: 706 DQVIAAYNSVIVCLCKHGTVDTAQLLLTKMLTKGFLIDSVCFTALLHGLCHKG 758



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 130/282 (46%), Gaps = 27/282 (9%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLL-GALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
           EL++A+  F  +I     P +  +N+++ G     K      CL+E +N++   PD  + 
Sbjct: 500 ELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNE-MNSVHHAPDEYTY 558

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           + +++ + K   +S A    G++++  F P+V+T   LI G C +     A  +F+   +
Sbjct: 559 STVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFSGMKS 618

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
           FD    ++PNV+ Y +++ G  K G   +   +F  M   G  P+   ++ LI       
Sbjct: 619 FD----LVPNVVTYTTLVGGFFKAGKPERATSIFELMLMNGCLPNDATFHYLI------- 667

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVIC-----------HPDVLSYCSIINSLCKDVL 294
              +   NT+ +  L EE  +   E  +I               + +Y S+I  LCK   
Sbjct: 668 ---NGLTNTATSPVLIEEKDSKENERSLILDFFTMMLLDGWDQVIAAYNSVIVCLCKHGT 724

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           VD A+ L   M ++G + D V +++L+ G C  G+  + R +
Sbjct: 725 VDTAQLLLTKMLTKGFLIDSVCFTALLHGLCHKGKSKEWRNI 766



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 140/357 (39%), Gaps = 57/357 (15%)

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDM----KGRGIYPDAFVYNSLIRVYCCAVN 246
           N  P  +    +++GL K G V+    L+  M     G G   D +  + +++  C    
Sbjct: 161 NCFPTFVASNLLLNGLVKSGKVDVALQLYDKMLQTDDGTGAVVDNYTTSIMVKGLCNLGK 220

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
            E+ +      L  H          G  C P V+ Y  II+  CK   +  A     ++K
Sbjct: 221 IEEGR-----RLIKHR--------WGKCCVPHVVFYNMIIDGYCKKGDLQCATRALNELK 267

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            +G++P V  Y +LI+G+C  G  +   +L   + + G   +   +N +I++  K   V 
Sbjct: 268 MKGVLPTVETYGALINGFCKAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEYKYGLVT 327

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           EA  +   M  MG  P                      D+T +N +++  CK  R+  A 
Sbjct: 328 EAAEMLRRMAEMGCGP----------------------DITTYNIMINFSCKGGRIEEAD 365

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL---PDMEEK------------- 470
           EL +K    G  PN  +YT ++   C +G   KA  +L    ++ EK             
Sbjct: 366 ELLEKAKERGLLPNKFSYTPLMHAYCKKGDYVKASGMLFRIAEIGEKSDLVSYGAFIHGV 425

Query: 471 --IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQE 525
               E   A+ +  KM ++ V PD    +IL   L K         LL   L RN +
Sbjct: 426 VVAGEIDVALMVREKMMEKGVFPDAQIYNILMSGLCKKGRIPAMKLLLSEMLDRNVQ 482



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 110/261 (42%), Gaps = 36/261 (13%)

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
           C  D +++ S++  L    +  + + +  +MK++ + P    +S+LI  Y   G +D A 
Sbjct: 91  CSLDGVAHSSLLKLLASYRVFPEIELVLENMKAQHLKPTREAFSALILAYAESGSLDRAL 150

Query: 335 KLFVSI-ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS----MGVRPDNS---- 385
           +LF ++ E   C P   + N L+N   K  KV+ AL LY +M+      G   DN     
Sbjct: 151 QLFHTVREMHNCFPTFVASNLLLNGLVKSGKVDVALQLYDKMLQTDDGTGAVVDNYTTSI 210

Query: 386 -----CILEAAELFRTLHNTKFEL----DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
                C L   E  R L   ++       +  +N ++DG CK   L+ A     +L   G
Sbjct: 211 MVKGLCNLGKIEEGRRLIKHRWGKCCVPHVVFYNMIIDGYCKKGDLQCATRALNELKMKG 270

Query: 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDM------------------EEKIRECLKAI 478
             P V TY  +I G C  G  E    LL +M                  E K     +A 
Sbjct: 271 VLPTVETYGALINGFCKAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEYKYGLVTEAA 330

Query: 479 ELLHKMAKRYVKPDEITVSIL 499
           E+L +MA+    PD  T +I+
Sbjct: 331 EMLRRMAEMGCGPDITTYNIM 351


>gi|125596712|gb|EAZ36492.1| hypothetical protein OsJ_20823 [Oryza sativa Japonica Group]
          Length = 604

 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 113/415 (27%), Positives = 181/415 (43%), Gaps = 77/415 (18%)

Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
           PDVVT G L+ GLC  G+  +A  +       D   ++ P+V+   +++DGLCK G V +
Sbjct: 170 PDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDL--DIRPDVVTLNTVVDGLCKSGRVQE 227

Query: 215 VRVLFLDMKGRGIY---PDAFVYNSLIRVYCCAVNWEDA--------------------- 250
             + F++ +   ++   P+   YN LI  +C   N   A                     
Sbjct: 228 A-LAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNT 286

Query: 251 -------KGNTSAALELHEE----FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
                   G T AALE   E    +  G G        + ++Y +++ +L     V  A 
Sbjct: 287 IVGGLCRAGRTGAALEFFREKRTVWPEGKG--------NAVTYSTLVGALLHTNNVGMAM 338

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
           ELF +  S G  PD ++Y ++I G    GR++DA  +  S++  G   DT +YN LI  +
Sbjct: 339 ELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAYNILIAGF 398

Query: 360 SKIEKVEEALSLYGEMISMGVRPD---------NSC----ILEAAELFRTLHNTKFELDL 406
            + +++ EA  L  EM  +G+RPD          SC         EL   + +   +  +
Sbjct: 399 CRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSV 458

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             F  LV G CK  ++  A  + + +   G  PN V Y  +I  LC  G ++ A +L  +
Sbjct: 459 ITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDE 518

Query: 467 MEEK---------------IRE---CLKAIELLHKMAKRYVKPDEITVSILEELL 503
           M+EK               +R+     KA EL+ +M +    PD +TV +L E L
Sbjct: 519 MKEKSVPANVTTFNALLKGLRDKNMPEKAFELMDQMREERCFPDYVTVDVLMEWL 573



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 102/233 (43%), Gaps = 17/233 (7%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           ++  +   G   D  + NIL+  FC+   + +A+  L  +      PDV T   L+ G C
Sbjct: 375 MASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSC 434

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
             G F     L  K +   C+P+VI     + +++ G CK G +++   +   M   GI+
Sbjct: 435 KAGDFAAVDELLGKMIDDGCQPSVI----TFGTLVHGYCKVGKIDEALRILRSMDESGIH 490

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           P+  +YN+LI   C        +G+   A+EL +E    +         +V ++ +++  
Sbjct: 491 PNNVIYNTLIDFLC-------KRGDVDLAIELFDEMKEKS------VPANVTTFNALLKG 537

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341
           L    + +KA EL   M+     PD V    L++   ++G  D  ++     E
Sbjct: 538 LRDKNMPEKAFELMDQMREERCFPDYVTVDVLMEWLPVIGETDRLKRFMQQGE 590



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 103/216 (47%), Gaps = 23/216 (10%)

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKS-RGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           DV ++ SI+ +L +   V     ++  M+    + PDVV Y  L++G C  GR+ DA ++
Sbjct: 135 DVFAFNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRV 194

Query: 337 F--VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS--MGVRPDN---SCILE 389
              +S +     PD  + NT+++   K  +V+EAL+   + +S   G  P+    +C+++
Sbjct: 195 LDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLID 254

Query: 390 ----------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE- 438
                     A EL   + N     ++   N +V GLC++ R  +A E F++     PE 
Sbjct: 255 AFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEG 314

Query: 439 -PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
             N VTY+ ++  L     +  A +L     EK+ E
Sbjct: 315 KGNAVTYSTLVGALLHTNNVGMAMELF---HEKMSE 347



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 4/151 (2%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           ++N L+     KK       L + +  +G+ PD  + N L++  CK    +     LG++
Sbjct: 390 AYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKM 449

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
           +     P V+T G L+ G C  GK  EA  +          PN   NVI Y ++ID LCK
Sbjct: 450 IDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPN---NVI-YNTLIDFLCK 505

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
            G V+    LF +MK + +  +   +N+L++
Sbjct: 506 RGDVDLAIELFDEMKEKSVPANVTTFNALLK 536



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 25/130 (19%)

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMIS-MGVRPDNSCILEAAELFRTLHNTKFELDL 406
           D  ++N+++ + +++  V     +Y  M     VRPD                      +
Sbjct: 135 DVFAFNSILAALARVRDVPGMARIYALMQGCASVRPD----------------------V 172

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE--PNVVTYTVMICGLCIEGGIEKAYDLL 464
             +  LV+GLCK+ R+  A  +   + R   +  P+VVT   ++ GLC  G +++A   +
Sbjct: 173 VTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFV 232

Query: 465 PDMEEKIREC 474
                 +  C
Sbjct: 233 EQRMSSVHGC 242


>gi|449443903|ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
 gi|449475521|ref|XP_004154479.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
          Length = 660

 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 122/459 (26%), Positives = 191/459 (41%), Gaps = 69/459 (15%)

Query: 91  NSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL- 149
           N+LL  L   + +     L  ++  + + P  ++  IL+N  CK   + DA     ++  
Sbjct: 156 NALLTGLGKAREFGKMNLLMRKMKDMNIQPTVITFGILINHLCKFRRIDDALEVFEKMKG 215

Query: 150 ----RKVF-SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
                KVF +PD +    LI GLC  G+  EA  L  K  +  C     P    +  +I+
Sbjct: 216 EKEETKVFVAPDTIMYNTLIDGLCKVGRQEEALCLMGKMRSDQC----APTTATFNCLIN 271

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE----L 260
           G C+ G +     LF +M+   I P+    N+L+   C            S A+E    +
Sbjct: 272 GYCRSGEIEVAHKLFNEMENAQIEPNVITLNTLVDGMC-------KHNRISTAVEFFRVM 324

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
            ++ + GN           ++Y   IN+ C    ++KA E   +M   G  PD VVY +L
Sbjct: 325 QQKGLKGNN----------VTYTVFINAFCNVNNMNKAMEFLDEMSKDGCFPDAVVYYTL 374

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           I G    GR+DDA  +   ++  G   D   YN LI+ + K  K++ A     EM   GV
Sbjct: 375 ICGLAQAGRLDDASSVVSKLKEAGFCLDRVCYNVLISEFCKKNKLDRAQEWLNEMELAGV 434

Query: 381 RPDNSCILEAAELFRTLHNTKFE------------LDLTVFN--CLVDGLCKSWRLRSAW 426
           +PD+         F  + N K              L  TVF    L+   C +  +  A 
Sbjct: 435 KPDSVTYNTLISYFSKIGNFKLAHKFMKKMTEEEGLSPTVFTYGALIHAYCLNNNIDEAI 494

Query: 427 ELFKKLPRYGPE--PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL--------- 475
           ++FK++     +  PN V Y ++I  LC +  +  A  LL DM  K R  +         
Sbjct: 495 KIFKEMNNVASKVPPNTVIYNILIDSLCKQTQVNFALSLLDDM--KFRGVMPNTTTYNSI 552

Query: 476 -----------KAIELLHKMAKRYVKPDEITVSILEELL 503
                      KA +L+ +M ++   PD IT+ IL E L
Sbjct: 553 FKALRDKNWLDKAFKLMDRMVEQACNPDYITMEILTEWL 591



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 143/346 (41%), Gaps = 49/346 (14%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           +SGE+E+   L  FN M + Q  P + + N+L+  +         +     +   GL  +
Sbjct: 275 RSGEIEVAHKL--FNEMENAQIEPNVITLNTLVDGMCKHNRISTAVEFFRVMQQKGLKGN 332

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V+  + +N FC +  ++ A   L  + +    PD V    LI GL   G+  +AS + +
Sbjct: 333 NVTYTVFINAFCNVNNMNKAMEFLDEMSKDGCFPDAVVYYTLICGLAQAGRLDDASSVVS 392

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           K            + +CY  +I   CK   +++ +    +M+  G+ PD+  YN+LI  +
Sbjct: 393 KLK----EAGFCLDRVCYNVLISEFCKKNKLDRAQEWLNEMELAGVKPDSVTYNTLISYF 448

Query: 242 CCAVNWEDA-----------------------------KGNTSAALELHEEFVNGNGELG 272
               N++ A                               N   A+++ +E  N    + 
Sbjct: 449 SKIGNFKLAHKFMKKMTEEEGLSPTVFTYGALIHAYCLNNNIDEAIKIFKEMNN----VA 504

Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
               P+ + Y  +I+SLCK   V+ A  L  DMK RG++P+   Y+S+         +D 
Sbjct: 505 SKVPPNTVIYNILIDSLCKQTQVNFALSLLDDMKFRGVMPNTTTYNSIFKALRDKNWLDK 564

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
           A KL   +  + C PD          Y  +E + E LS  GE+  +
Sbjct: 565 AFKLMDRMVEQACNPD----------YITMEILTEWLSAVGEITKL 600


>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 878

 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 170/339 (50%), Gaps = 32/339 (9%)

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
           L++ +   V     LI      G   EA  +F    +      ++PN++ Y ++ID   K
Sbjct: 217 LKEGYGKTVYAFSALISAYGRSGYCNEAIKVFDSMKS----NGLMPNLVTYNAVIDACGK 272

Query: 209 DGF-VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267
            G    KV  +F  M   G+ PD   +NSL+ V      WE A+   SA ++        
Sbjct: 273 GGVEFKKVVEIFDGMLSNGVQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDK------- 325

Query: 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
               G+    D+ +Y ++++++CK   +D A E+  +M ++ I+P+VV YS++IDGY  +
Sbjct: 326 ----GI--DQDIFTYNTLLDAVCKGGQMDLAFEIMSEMPTKNILPNVVTYSTMIDGYAKV 379

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---- 383
           GR+DDA  +F  ++  G   D  SYNTL++ Y+K+ + E+AL +  EM + G+R D    
Sbjct: 380 GRLDDALNMFNEMKFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTY 439

Query: 384 NSCIL---------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
           N+ +          E   +F  +   +   +L  ++ L+D   K    + A E+F++  +
Sbjct: 440 NALLAGYGKQYRYDEVRRVFEEMKRGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQ 499

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM-EEKIR 472
            G + +VV Y+ +I  LC  G +E +  LL +M +E IR
Sbjct: 500 AGLKADVVLYSALIDALCKNGLVESSVTLLDEMTKEGIR 538



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 95/423 (22%), Positives = 189/423 (44%), Gaps = 52/423 (12%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALA-GKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           N+A+  F+ M      P + ++N+++ A   G   +   + + + + + G+ PD ++ N 
Sbjct: 242 NEAIKVFDSMKSNGLMPNLVTYNAVIDACGKGGVEFKKVVEIFDGMLSNGVQPDRITFNS 301

Query: 128 LMNCFCKMIGVSDAFVAL-GRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           L+   C   G+ +A   L   ++ K    D+ T   L+  +C  G+   A  + ++    
Sbjct: 302 LL-AVCSRGGLWEAARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQMDLAFEIMSEMPT- 359

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
               N++PNV+ Y+++IDG  K G ++    +F +MK  G+  D   YN+L+ VY     
Sbjct: 360 ---KNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLDRVSYNTLLSVYAKLGR 416

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICH-----------------------------P 277
           +E A       L++ +E  N      V+ +                             P
Sbjct: 417 FEQA-------LDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRGRVSP 469

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           ++L+Y ++I+   K  L  +A E+F + K  G+  DVV+YS+LID  C  G ++ +  L 
Sbjct: 470 NLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCKNGLVESSVTLL 529

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397
             +  EG  P+  +YN++I+++ +    +  +   GE  ++ V   +S +++ A   +  
Sbjct: 530 DEMTKEGIRPNVVTYNSIIDAFGRSASAQCVVDDSGETTALQVESLSSIVVQEAIESQAA 589

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWEL------FKKLPRYGPEPNVVTYTVMI--C 449
                 + + +F  L        +     E+      F+K+     +PNVVT++ ++  C
Sbjct: 590 DKEDNRI-IEIFGKLAAEKACEAKNSGKQEILCILGVFQKMHELKIKPNVVTFSAILNAC 648

Query: 450 GLC 452
             C
Sbjct: 649 SRC 651



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 105/199 (52%), Gaps = 14/199 (7%)

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
           ++I++L +   V+ AK +F      G    V  +S+LI  Y   G  ++A K+F S++S 
Sbjct: 195 AMISTLGRLGKVELAKAVFDTALKEGYGKTVYAFSALISAYGRSGYCNEAIKVFDSMKSN 254

Query: 344 GCIPDTSSYNTLINSYSKIE-KVEEALSLYGEMISMGVRPD------------NSCILEA 390
           G +P+  +YN +I++  K   + ++ + ++  M+S GV+PD               + EA
Sbjct: 255 GLMPNLVTYNAVIDACGKGGVEFKKVVEIFDGMLSNGVQPDRITFNSLLAVCSRGGLWEA 314

Query: 391 A-ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
           A  LF  + +   + D+  +N L+D +CK  ++  A+E+  ++P     PNVVTY+ MI 
Sbjct: 315 ARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQMDLAFEIMSEMPTKNILPNVVTYSTMID 374

Query: 450 GLCIEGGIEKAYDLLPDME 468
           G    G ++ A ++  +M+
Sbjct: 375 GYAKVGRLDDALNMFNEMK 393


>gi|15225031|ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42570711|ref|NP_973429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g06000
 gi|4006835|gb|AAC95177.1| hypothetical protein [Arabidopsis thaliana]
 gi|110736272|dbj|BAF00106.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250896|gb|AEC05990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330250897|gb|AEC05991.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 536

 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 107/392 (27%), Positives = 179/392 (45%), Gaps = 57/392 (14%)

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
           +N L+N   K+  V DA       LR     D  T   LIRGLC  GK  +A  L     
Sbjct: 174 VNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMS 233

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK-GRGIYPDAFVYNSLIRVYCC 243
            F C P+++     Y ++I G CK   +NK   +F D+K G    PD   Y S+I  YC 
Sbjct: 234 GFGCEPDIVT----YNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCK 289

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
           A       G    A  L ++ +     LG+  +P  +++  +++   K   +  A+E+  
Sbjct: 290 A-------GKMREASSLLDDML----RLGI--YPTNVTFNVLVDGYAKAGEMLTAEEIRG 336

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            M S G  PDVV ++SLIDGYC +G++    +L+  + + G  P+  +Y+ LIN+     
Sbjct: 337 KMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNEN 396

Query: 364 KVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLR 423
           ++ +A  L G++ S  + P                         ++N ++DG CK+ ++ 
Sbjct: 397 RLLKARELLGQLASKDIIPQP----------------------FMYNPVIDGFCKAGKVN 434

Query: 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHK 483
            A  + +++ +   +P+ +T+T++I G C++G +                  +A+ + HK
Sbjct: 435 EANVIVEEMEKKKCKPDKITFTILIIGHCMKGRM-----------------FEAVSIFHK 477

Query: 484 MAKRYVKPDEITVSILEELLNKDENCHECMNL 515
           M      PD+ITVS L   L K     E  +L
Sbjct: 478 MVAIGCSPDKITVSSLLSCLLKAGMAKEAYHL 509



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 157/340 (46%), Gaps = 25/340 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            + DA+  F+  +  Q      +FN L+  L G       + L   ++  G  PD V+ N
Sbjct: 186 RVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYN 245

Query: 127 ILMNCFCKMIGVSDAFVALGRILR-KVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
            L+  FCK   ++ A      +    V SPDVVT   +I G C  GK  EAS L    + 
Sbjct: 246 TLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDML- 304

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
              R  + P  + +  ++DG  K G +     +   M   G +PD   + SLI  YC   
Sbjct: 305 ---RLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYC--- 358

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
                 G  S    L EE +N  G       P+  +Y  +IN+LC +  + KA+EL   +
Sbjct: 359 ----RVGQVSQGFRLWEE-MNARGMF-----PNAFTYSILINALCNENRLLKARELLGQL 408

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
            S+ IIP   +Y+ +IDG+C  G++++A  +   +E + C PD  ++  LI  +    ++
Sbjct: 409 ASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRM 468

Query: 366 EEALSLYGEMISMGVRPDN-------SCILEAAELFRTLH 398
            EA+S++ +M+++G  PD        SC+L+A       H
Sbjct: 469 FEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYH 508



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 113/252 (44%), Gaps = 36/252 (14%)

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV-S 339
           +Y  +  SLCK  L D A ++F  MKS G+ P+  +   L+  +   G++  A  L + S
Sbjct: 105 TYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQS 164

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC--IL--------- 388
            E EGC       N+L+N+  K+++VE+A+ L+ E +      D     IL         
Sbjct: 165 FEVEGC---CMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGK 221

Query: 389 --EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP-EPNVVTYT 445
             +A EL   +     E D+  +N L+ G CKS  L  A E+FK +       P+VVTYT
Sbjct: 222 AEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYT 281

Query: 446 VMICGLCIEGGIEKAYDLLPDM------------------EEKIRECLKAIELLHKMAKR 487
            MI G C  G + +A  LL DM                    K  E L A E+  KM   
Sbjct: 282 SMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISF 341

Query: 488 YVKPDEITVSIL 499
              PD +T + L
Sbjct: 342 GCFPDVVTFTSL 353



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 102/235 (43%), Gaps = 17/235 (7%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++ +A    + M+ +   P   +FN L+   A     +    +  ++ + G  PD V+  
Sbjct: 292 KMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFT 351

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++ +C++  VS  F     +  +   P+  T   LI  LC + +  +A  L  +  + 
Sbjct: 352 SLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASK 411

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           D    +IP    Y  +IDG CK G VN+  V+  +M+ +   PD   +  LI  +C    
Sbjct: 412 D----IIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHC---- 463

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
               KG    A+ +  + V       + C PD ++  S+++ L K  +  +A  L
Sbjct: 464 ---MKGRMFEAVSIFHKMV------AIGCSPDKITVSSLLSCLLKAGMAKEAYHL 509


>gi|222623336|gb|EEE57468.1| hypothetical protein OsJ_07708 [Oryza sativa Japonica Group]
          Length = 335

 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 105/363 (28%), Positives = 174/363 (47%), Gaps = 42/363 (11%)

Query: 140 DAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNV-IC 198
           + F  L R+      P+ +T G  I G C  G  +EA  LF            I ++ + 
Sbjct: 2   EVFDLLDRMADHGLEPNSLTYGIAIVGFCRGGNLSEAEVLFNVV-----EEKGIDHIEVM 56

Query: 199 YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL 258
           Y+S++ G    G+ +   +LF+ +  +G   D F  + LI   C   N + A       L
Sbjct: 57  YSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIML 116

Query: 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS 318
           E +           V+  PDV+SY  +I+  C++  +DKA   F DM  RG+  DV+VY+
Sbjct: 117 EHN-----------VV--PDVISYSKLISIYCQNGDMDKAHLWFHDMVQRGLSIDVIVYT 163

Query: 319 SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
            L++GYC  GR+ +A +LFV + + G  PD  +Y  L++ + K    +    +  E  S 
Sbjct: 164 ILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQGWEGIAKERRSF 223

Query: 379 GVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
            +R +++      +L  ++ + + E D+  +  L+DG CK+  L  A ELF ++ + G  
Sbjct: 224 LLRANHN------KLLSSMKDMQIEPDVPCYTVLIDGKCKAEYLVEARELFDEMLQKGLT 277

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSI 498
           P+   YT +I G C +G I KA DLL +M +K                  ++PDE+T S+
Sbjct: 278 PDAYAYTALINGYCSQGEISKAEDLLQEMIDK-----------------GIEPDELTFSV 320

Query: 499 LEE 501
           L +
Sbjct: 321 LNQ 323



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 120/260 (46%), Gaps = 11/260 (4%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           R+   G L D  S + L+N  C++  V  A      +L     PDV++   LI   C  G
Sbjct: 79  RVARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHNVVPDVISYSKLISIYCQNG 138

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
              +A   F   V    +  +  +VI Y  +++G CK G + +   LF+ M   GI PD 
Sbjct: 139 DMDKAHLWFHDMV----QRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDV 194

Query: 232 FVYNSLIRVY---CCAVNWED-AKGNTSAALEL-HEEFVNGNGELGVICHPDVLSYCSII 286
             Y  L+  +        WE  AK   S  L   H + ++   ++ +   PDV  Y  +I
Sbjct: 195 IAYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQI--EPDVPCYTVLI 252

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           +  CK   + +A+ELF +M  +G+ PD   Y++LI+GYC  G I  A  L   +  +G  
Sbjct: 253 DGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIE 312

Query: 347 PDTSSYNTLINSYSKIEKVE 366
           PD  +++ L  S  +  K++
Sbjct: 313 PDELTFSVLNQSSLRSRKIQ 332


>gi|3107905|dbj|BAA25906.1| leaf protein [Ipomoea nil]
          Length = 665

 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 111/479 (23%), Positives = 207/479 (43%), Gaps = 48/479 (10%)

Query: 45  STVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYV 104
            TV  +TKL+K L E  K  EV           +      P + ++ ++L AL  +K + 
Sbjct: 66  QTVRSRTKLMKTLIERGKPQEVH-----SITKGLTEEGHRPTLVTYTTVLAALTLQKRFK 120

Query: 105 NFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLI 164
           +   L +++   GL PD +  N ++N FC+   V +A     ++  K   P   T   LI
Sbjct: 121 SIPLLLKKVEQNGLRPDSIFFNPMINAFCESGNVKEAMKIFRKMREKGCKPTASTFNALI 180

Query: 165 RGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224
           +G  + GK  E+S L           N+ P+   Y  ++   C    + K   +   M G
Sbjct: 181 KGFGIIGKPEESSKLLE---IMSREENIKPDDRTYNILVQAWCNKNNIEKAWGVVHRMVG 237

Query: 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGN-TSAALELHEEFVNGNGELGVICHPDVLSYC 283
            G+ PD   YN++ R Y        A+G  TS A EL  +  N          P+V +  
Sbjct: 238 AGLKPDVVTYNTIARAY--------ARGKETSRAAELISQMQNNK------VAPNVRTCG 283

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
            +++   K+  +  A +    M+  G+ P++ +++SL+ G+  +       +    ++  
Sbjct: 284 IVVDGYSKEGNMADALKFIYKMQGFGVHPNLFIFNSLLKGFLDITDTKGVDETLTLMQEF 343

Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI-------------LEA 390
           G  PD  +Y+T++N++S    +E+   ++ +MI  G+ PDN                 +A
Sbjct: 344 GVKPDVVTYSTIMNAWSSAGLMEKCEEMFQDMIKSGIEPDNHAFSILAKGYVRAGEPKKA 403

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
             L   +       ++ +F  ++ G C + ++  A  ++ ++ R   +PN+ T+  +I G
Sbjct: 404 EALLEAMATHGAHPNVVMFTTIISGWCSAAKMEDALRVYDRMCRMDVQPNLNTFETLIWG 463

Query: 451 LCIEGGIEKAYDLLPDMEEK-----------IRECLKAIELLHKMAKRYVKPDEITVSI 498
                   KA +LL  MEE            + +  +AI  +++ AKR +  D+ +V I
Sbjct: 464 YGEANEPWKAEELLQIMEEMGVLPRKNTVQLVADAWRAIGFINE-AKRILNDDQSSVLI 521



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 108/242 (44%), Gaps = 42/242 (17%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P +++Y +++ +L           L   ++  G+ PD + ++ +I+ +C  G + +A K+
Sbjct: 101 PTLVTYTTVLAALTLQKRFKSIPLLLKKVEQNGLRPDSIFFNPMINAFCESGNVKEAMKI 160

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM--GVRPDNSCILEAAELF 394
           F  +  +GC P  S++N LI  +  I K EE+  L  E++S    ++PD+          
Sbjct: 161 FRKMREKGCKPTASTFNALIKGFGIIGKPEESSKLL-EIMSREENIKPDD---------- 209

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
           RT            +N LV   C    +  AW +  ++   G +P+VVTY          
Sbjct: 210 RT------------YNILVQAWCNKNNIEKAWGVVHRMVGAGLKPDVVTYNT-------- 249

Query: 455 GGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMN 514
             I +AY        + +E  +A EL+ +M    V P+  T  I+ +  +K+ N  + + 
Sbjct: 250 --IARAY-------ARGKETSRAAELISQMQNNKVAPNVRTCGIVVDGYSKEGNMADALK 300

Query: 515 LL 516
            +
Sbjct: 301 FI 302


>gi|356513749|ref|XP_003525573.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
           mitochondrial-like [Glycine max]
          Length = 819

 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 112/428 (26%), Positives = 190/428 (44%), Gaps = 92/428 (21%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+LPD ++ N L N   +   V  A     ++ R  F P+  T   +I+ LC +G   + 
Sbjct: 190 GILPDVLTCNFLFNRLVEHGEVDKALAVYEQLKRFGFIPNCYTYAIVIKALCKKGDLKQP 249

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD--------------------------- 209
             +F +      R  VIP+  C+A+ I+GLC +                           
Sbjct: 250 LCVFEEME----RVGVIPHSYCFAAYIEGLCNNHRSDLGYEVLQAFRKGNAPLEVYAYTA 305

Query: 210 ---GFVNKVRV-----LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261
              GF N++++     +F DM+ +G+ PD +VY+SLI  YC          N   AL LH
Sbjct: 306 VVRGFCNEMKLDEAQGVFDDMERQGVVPDVYVYSSLIHGYC-------KSHNLLRALALH 358

Query: 262 EEFVNGN---------------GELGVICHP--------------DVLSYCSIINSLCKD 292
           +E ++                 GE+G+                  D ++Y  + ++LC  
Sbjct: 359 DEMISRGVKTNCVVVSCILHCLGEMGMTLEVVDQFKELKESGMFLDGVAYNIVFDALCML 418

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             V+ A E+  +MKS+ +  DV  Y++LI+GYCL G +  A  +F  ++ +G  PD  +Y
Sbjct: 419 GKVEDAVEMVEEMKSKRLGLDVKHYTTLINGYCLQGDLVTAFNMFKEMKEKGLKPDIVTY 478

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRTLHN 399
           N L    S+     E + L   M S G++P+++              +LEA   F +L +
Sbjct: 479 NVLAAGLSRNGHARETVKLLDFMESQGMKPNSTTHKMIIEGLCSGGKVLEAEVYFNSLED 538

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
              E    +++ +V+G C++  ++ ++E+F KL   G      +   ++  LC+ G IEK
Sbjct: 539 KNIE----IYSAMVNGYCETDLVKKSYEVFLKLLNQGDMAKKASCFKLLSKLCMTGDIEK 594

Query: 460 AYDLLPDM 467
           A  LL  M
Sbjct: 595 AVKLLDRM 602



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 175/404 (43%), Gaps = 48/404 (11%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           + L   G+  D V+ NI+ +  C +  V DA   +  +  K    DV     LI G C+Q
Sbjct: 394 KELKESGMFLDGVAYNIVFDALCMLGKVEDAVEMVEEMKSKRLGLDVKHYTTLINGYCLQ 453

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G    A  +F +         + P+++ Y  +  GL ++G   +   L   M+ +G+ P+
Sbjct: 454 GDLVTAFNMFKEMK----EKGLKPDIVTYNVLAAGLSRNGHARETVKLLDFMESQGMKPN 509

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAA----LELHEEFVNGNGE-----------LGVIC 275
           +  +  +I   C      +A+   ++     +E++   VNG  E           L ++ 
Sbjct: 510 STTHKMIIEGLCSGGKVLEAEVYFNSLEDKNIEIYSAMVNGYCETDLVKKSYEVFLKLLN 569

Query: 276 HPDVLSYCS---IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
             D+    S   +++ LC    ++KA +L   M    + P  ++YS ++   C  G + +
Sbjct: 570 QGDMAKKASCFKLLSKLCMTGDIEKAVKLLDRMLLSNVEPSKIMYSKILAALCQAGDMKN 629

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------- 383
           AR LF      G  PD  +Y  +INSY ++  ++EA  L+ +M   G++PD         
Sbjct: 630 ARTLFDVFVHRGFTPDVVTYTIMINSYCRMNCLQEAHDLFQDMKRRGIKPDVITFTVLLD 689

Query: 384 -----------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
                             +  L  + + R +   K   D+  +  L+DG  K+   + A 
Sbjct: 690 GSLKEYLGKRFSSHGKRKTTSLYVSTILRDMEQMKINPDVVCYTVLMDGHMKTDNFQQAV 749

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            LF K+   G EP+ +TYT ++ GLC  G +EKA  LL +M  K
Sbjct: 750 SLFDKMIESGLEPDTITYTALVSGLCNRGHVEKAVTLLNEMSSK 793



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/423 (25%), Positives = 185/423 (43%), Gaps = 88/423 (20%)

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
           FV   + +N F K I        L +  R+   PDV+T   L   L   G+  +A  ++ 
Sbjct: 166 FVKTCVSLNMFDKAIDF------LFQTRRRGILPDVLTCNFLFNRLVEHGEVDKALAVYE 219

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           +   F      IPN   YA +I  LCK G + +   +F +M+  G+ P ++ + + I   
Sbjct: 220 QLKRF----GFIPNCYTYAIVIKALCKKGDLKQPLCVFEEMERVGVIPHSYCFAAYIEGL 275

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
           C           +    E+ + F  GN  L      +V +Y +++   C ++ +D+A+ +
Sbjct: 276 C-------NNHRSDLGYEVLQAFRKGNAPL------EVYAYTAVVRGFCNEMKLDEAQGV 322

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           F DM+ +G++PDV VYSSLI GYC                         S+N L      
Sbjct: 323 FDDMERQGVVPDVYVYSSLIHGYC------------------------KSHNLL------ 352

Query: 362 IEKVEEALSLYGEMISMGVRPD---NSCI----------LEAAELFRTLHNTKFELDLTV 408
                 AL+L+ EMIS GV+ +    SCI          LE  + F+ L  +   LD   
Sbjct: 353 -----RALALHDEMISRGVKTNCVVVSCILHCLGEMGMTLEVVDQFKELKESGMFLDGVA 407

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +N + D LC   ++  A E+ +++       +V  YT +I G C++G +  A+++  +M+
Sbjct: 408 YNIVFDALCMLGKVEDAVEMVEEMKSKRLGLDVKHYTTLINGYCLQGDLVTAFNMFKEMK 467

Query: 469 EKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESK 528
           EK                  +KPD +T ++L   L+++ +  E + LL    S+  + + 
Sbjct: 468 EK-----------------GLKPDIVTYNVLAAGLSRNGHARETVKLLDFMESQGMKPNS 510

Query: 529 LTR 531
            T 
Sbjct: 511 TTH 513



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 118/273 (43%), Gaps = 30/273 (10%)

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++N +C+   V  ++    ++L +       +   L+  LCM G   +A  L  + +   
Sbjct: 547 MVNGYCETDLVKKSYEVFLKLLNQGDMAKKASCFKLLSKLCMTGDIEKAVKLLDRMLL-- 604

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
              NV P+ I Y+ I+  LC+ G +   R LF     RG  PD   Y  +I  YC     
Sbjct: 605 --SNVEPSKIMYSKILAALCQAGDMKNARTLFDVFVHRGFTPDVVTYTIMINSYC----- 657

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD--------KAK 299
                  +   E H+ F +     G+   PDV+++  +++   K+ L          K  
Sbjct: 658 -----RMNCLQEAHDLFQDMKRR-GI--KPDVITFTVLLDGSLKEYLGKRFSSHGKRKTT 709

Query: 300 ELFL-----DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
            L++     DM+   I PDVV Y+ L+DG+        A  LF  +   G  PDT +Y  
Sbjct: 710 SLYVSTILRDMEQMKINPDVVCYTVLMDGHMKTDNFQQAVSLFDKMIESGLEPDTITYTA 769

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
           L++       VE+A++L  EM S G+ PD   I
Sbjct: 770 LVSGLCNRGHVEKAVTLLNEMSSKGMTPDVHII 802



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 103/243 (42%), Gaps = 12/243 (4%)

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++  C    +  A   L R+L     P  +    ++  LC  G    A  LF  FV   
Sbjct: 582 LLSKLCMTGDIEKAVKLLDRMLLSNVEPSKIMYSKILAALCQAGDMKNARTLFDVFV--- 638

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI----RVYCC 243
                 P+V+ Y  +I+  C+   + +   LF DMK RGI PD   +  L+    + Y  
Sbjct: 639 -HRGFTPDVVTYTIMINSYCRMNCLQEAHDLFQDMKRRGIKPDVITFTVLLDGSLKEYLG 697

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                  K  T++   L+   +  + E   I +PDV+ Y  +++   K     +A  LF 
Sbjct: 698 KRFSSHGKRKTTS---LYVSTILRDMEQMKI-NPDVVCYTVLMDGHMKTDNFQQAVSLFD 753

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
            M   G+ PD + Y++L+ G C  G ++ A  L   + S+G  PD    + L     K  
Sbjct: 754 KMIESGLEPDTITYTALVSGLCNRGHVEKAVTLLNEMSSKGMTPDVHIISALKRGIIKAR 813

Query: 364 KVE 366
           KV+
Sbjct: 814 KVQ 816



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 97/228 (42%), Gaps = 30/228 (13%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L +R+    + P  +  + ++   C+   + +A       + + F+PDVVT   +I   C
Sbjct: 598 LLDRMLLSNVEPSKIMYSKILAALCQAGDMKNARTLFDVFVHRGFTPDVVTYTIMINSYC 657

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK-------------V 215
                 EA  LF        R  + P+VI +  ++DG  K+    +             V
Sbjct: 658 RMNCLQEAHDLFQDMK----RRGIKPDVITFTVLLDGSLKEYLGKRFSSHGKRKTTSLYV 713

Query: 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275
             +  DM+   I PD   Y  L+  +    N++        A+ L ++ +    E     
Sbjct: 714 STILRDMEQMKINPDVVCYTVLMDGHMKTDNFQQ-------AVSLFDKMIESGLE----- 761

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
            PD ++Y ++++ LC    V+KA  L  +M S+G+ PDV + S+L  G
Sbjct: 762 -PDTITYTALVSGLCNRGHVEKAVTLLNEMSSKGMTPDVHIISALKRG 808


>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
 gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 182/392 (46%), Gaps = 39/392 (9%)

Query: 79  IHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGV 138
           + M+   F+P +N+L+     +        L   +   G+ PD ++ + ++N   +M  V
Sbjct: 235 LSMRIKSFVPVYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNV 294

Query: 139 SDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVIC 198
             A   L ++  +  SP+V T   L++G  M G+  EA  L+ + +    +    PN + 
Sbjct: 295 EMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMI----QEGSEPNTVA 350

Query: 199 YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL 258
           Y ++I GLC  G + +   +   M+  G++P+   Y++LI  +  A       G+   A 
Sbjct: 351 YNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKA-------GDLVGAS 403

Query: 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS 318
           E+  + +  NG     C P+V+ Y  +++ LC++ + + A  L  +M +    P+ + ++
Sbjct: 404 EIWNKMIT-NG-----CLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFN 457

Query: 319 SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
           + I G C  G+ + A K+   +   GC P+ ++YN +++     ++  EAL + GE+  M
Sbjct: 458 TFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQIVGEIEEM 517

Query: 379 GVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438
            ++                       +L  +N ++ G C +   + A ++  KL   G +
Sbjct: 518 EIKS----------------------NLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTK 555

Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           P+ +TY  +I   C +G ++ A  L+  + +K
Sbjct: 556 PDSITYNTVIYAYCKQGEVKTAIQLVDRLTKK 587



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 167/373 (44%), Gaps = 34/373 (9%)

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           I++N + +      A     RI      P V     ++  L  + KF   +G++      
Sbjct: 113 IVINAYRRAGLAEQALKTFYRIGEFGCKPSVKIYNHVLDALLSENKFQMINGIYNNMK-- 170

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             R  +  NV  Y  ++  LCK+  V+  R L  +M  +G  PDA  Y +++   C    
Sbjct: 171 --RDGIELNVYTYNMLLKALCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVVSSMCRLGK 228

Query: 247 WEDAKG---NTSAALELHEEFVNGN-------------GELGV-ICHPDVLSYCSIINSL 289
            E+A+       + + ++   +NG               E+ V    PDV++Y ++IN+L
Sbjct: 229 VEEARELSMRIKSFVPVYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTL 288

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
            +   V+ A  +   M  RG  P+V  ++SL+ GY + GR+ +A  L+  +  EG  P+T
Sbjct: 289 SEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNT 348

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC-------------ILEAAELFRT 396
            +YNTLI+      K+ EA+S+  +M   GV P+ +              ++ A+E++  
Sbjct: 349 VAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNK 408

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           +       ++ V+ C+VD LC++     A  L + +      PN +T+   I GLC  G 
Sbjct: 409 MITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGK 468

Query: 457 IEKAYDLLPDMEE 469
            E A  +L  M +
Sbjct: 469 TEWAMKVLNQMRQ 481



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 89/391 (22%), Positives = 165/391 (42%), Gaps = 40/391 (10%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           S+ G VE+  AL     M     +P + +F SL+            + L  R+   G  P
Sbjct: 289 SEMGNVEM--ALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEP 346

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           + V+ N L++  C    + +A     ++ R    P+  T   LI G    G    AS ++
Sbjct: 347 NTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIW 406

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            K +   C    +PNV+ Y  ++D LC++   N    L  +M      P+   +N+ I+ 
Sbjct: 407 NKMITNGC----LPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKG 462

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
            CC+       G T  A+++    +N   + G  C P+V +Y  +++ L       +A +
Sbjct: 463 LCCS-------GKTEWAMKV----LNQMRQYG--CAPNVTTYNEVLDGLFNAKRTREALQ 509

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           +  +++   I  ++V Y++++ G+C  G    A ++   +   G  PD+ +YNT+I +Y 
Sbjct: 510 IVGEIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVIYAYC 569

Query: 361 KIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           K  +V+ A+ L   +   G                     +   D+  +  L+ G+C   
Sbjct: 570 KQGEVKTAIQLVDRLTKKG---------------------EGYPDVFTYTSLLWGVCNWI 608

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
            +  A     K+   G  PN  T+  ++ GL
Sbjct: 609 GVDEAVVHLDKMINEGICPNRATWNALVRGL 639



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 131/317 (41%), Gaps = 28/317 (8%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           +AL  +N MI     P   ++N+L+  L      V  + +S+++   G+ P+  + + L+
Sbjct: 331 EALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLI 390

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           + F K   +  A     +++     P+VV   C++  LC    F  A  L       +C 
Sbjct: 391 DGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCP 450

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
           PN I     + + I GLC  G       +   M+  G  P+   YN ++     A    +
Sbjct: 451 PNTIT----FNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTRE 506

Query: 250 AKGNTSA--ALELHEEFVNGNGELGVICH--------------------PDVLSYCSIIN 287
           A         +E+    V  N  L   CH                    PD ++Y ++I 
Sbjct: 507 ALQIVGEIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVIY 566

Query: 288 SLCKDVLVDKAKELFLDMKSRG-IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           + CK   V  A +L   +  +G   PDV  Y+SL+ G C    +D+A      + +EG  
Sbjct: 567 AYCKQGEVKTAIQLVDRLTKKGEGYPDVFTYTSLLWGVCNWIGVDEAVVHLDKMINEGIC 626

Query: 347 PDTSSYNTLINS-YSKI 362
           P+ +++N L+   +SK+
Sbjct: 627 PNRATWNALVRGLFSKL 643



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/156 (20%), Positives = 64/156 (41%), Gaps = 22/156 (14%)

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           + Y+++I        ID  + L   ++ EG   +   +  +IN+Y +    E+AL  +  
Sbjct: 74  LTYTTMIKRLGYERDIDGIQYLLQLMKLEGISCNEDLFVIVINAYRRAGLAEQALKTFYR 133

Query: 375 MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
           +   G +P                       + ++N ++D L    + +    ++  + R
Sbjct: 134 IGEFGCKPS----------------------VKIYNHVLDALLSENKFQMINGIYNNMKR 171

Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            G E NV TY +++  LC    ++ A  LL +M  K
Sbjct: 172 DGIELNVYTYNMLLKALCKNDRVDAARKLLAEMSYK 207


>gi|255574462|ref|XP_002528143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532441|gb|EEF34234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 653

 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 109/442 (24%), Positives = 206/442 (46%), Gaps = 48/442 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +++A+  F  M   +  P   ++ +L+  L         + L + +   G  P   + N+
Sbjct: 197 VDNAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLLDEMQIEGCFPSPATFNV 256

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+N  CK    +     +  +  K   P+ VT   LI GLC++GK  +A  L  + V+  
Sbjct: 257 LINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLDRMVSSK 316

Query: 188 CRPNVIPNVICYASIIDGLCKDG-FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           C    +PN + Y +II+GL K G  ++  RVL L M+ RG   + +VY+ L       V+
Sbjct: 317 C----VPNEVTYGTIINGLVKQGRALDGARVLVL-MEERGYIVNEYVYSVL-------VS 364

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
               +G +  A+ L +E ++        C  + + Y ++++ LC+D   D+A ++  +M 
Sbjct: 365 GLFKEGKSEEAMRLFKESMDKG------CKLNTVLYSALVDGLCRDRKPDEAMKILSEMT 418

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            +G  P+   +SSL+ G+  +G    A +++  +    C  +   Y+ LI+   K  KV 
Sbjct: 419 DKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIHGLCKDGKVM 478

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           EA+ ++ +M++ G RP                      D+  ++ ++ GLC +  +  A 
Sbjct: 479 EAMMVWAKMLATGCRP----------------------DVVAYSSMIQGLCDAGSVEEAL 516

Query: 427 ELFKKLPRYGP--EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIREC---LKAIELL 481
           +L+ ++    P  +P+V+TY ++   LC +  I +A DLL  M +  R C   L    + 
Sbjct: 517 KLYNEMLCLEPDSQPDVITYNILFNALCKQSSISRAVDLLNSMLD--RGCDPDLVTCNIF 574

Query: 482 HKMAKRYVKPDEITVSILEELL 503
            +M +  + P +     L+EL+
Sbjct: 575 LRMLREKLDPPQDGAKFLDELV 596



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 155/359 (43%), Gaps = 76/359 (21%)

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           P    +NS++ V   A       G    ALE +   V G  ++ ++  P+VLS+  II S
Sbjct: 141 PTVKSFNSVLNVIIQA-------GFHDRALEFYNHVV-GAKDMNIL--PNVLSFNLIIKS 190

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           +CK  LVD A ELF +M  R  +PD   Y +L+DG C + RID+A  L   ++ EGC P 
Sbjct: 191 MCKLGLVDNAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLLDEMQIEGCFPS 250

Query: 349 TSSYNTLINS------YSKIE-----------------------------KVEEALSLYG 373
            +++N LIN       ++++                              K+++ALSL  
Sbjct: 251 PATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLD 310

Query: 374 EMISMGVRPD--------NSCI-----LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
            M+S    P+        N  +     L+ A +   +    + ++  V++ LV GL K  
Sbjct: 311 RMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGYIVNEYVYSVLVSGLFKEG 370

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK---------- 470
           +   A  LFK+    G + N V Y+ ++ GLC +   ++A  +L +M +K          
Sbjct: 371 KSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAMKILSEMTDKGCAPNAFTFS 430

Query: 471 --------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
                   +    KAIE+   M K     +E+  S+L   L KD    E M +    L+
Sbjct: 431 SLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIHGLCKDGKVMEAMMVWAKMLA 489



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 98/196 (50%), Gaps = 25/196 (12%)

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELF---LDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
           C P V S+ S++N + +    D+A E +   +  K   I+P+V+ ++ +I   C +G +D
Sbjct: 139 CKPTVKSFNSVLNVIIQAGFHDRALEFYNHVVGAKDMNILPNVLSFNLIIKSMCKLGLVD 198

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAA 391
           +A +LF  +    C+PD  +Y TL++   K+++++EA+SL  EM   G  P  +      
Sbjct: 199 NAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLLDEMQIEGCFPSPA------ 252

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
                            FN L++GLCK        +L   +   G  PN VTY  +I GL
Sbjct: 253 ----------------TFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGL 296

Query: 452 CIEGGIEKAYDLLPDM 467
           C++G ++KA  LL  M
Sbjct: 297 CLKGKLDKALSLLDRM 312


>gi|224136366|ref|XP_002326842.1| predicted protein [Populus trichocarpa]
 gi|222835157|gb|EEE73592.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 114/461 (24%), Positives = 197/461 (42%), Gaps = 56/461 (12%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DAL +  +MI    TP + +F +++ A   +   +    L + +   G +P+ V  N LM
Sbjct: 202 DALGWMRFMIDNGCTPSLVTFGTVINAFCNQGNMMEARNLFDGMKEAGHIPNVVCYNTLM 261

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           N + K   +  A +    +  K  +PD  T   L+ G    G+  +   L          
Sbjct: 262 NGYVKARDIGQANMLYEEMKSKAVAPDCTTFNILVAGHYRYGREEDRDRLLRDLSQSGSL 321

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
                  IC    + GLC  G++++      DM  +GI P    +NS+I  Y  A   E 
Sbjct: 322 SISSLYNIC----VSGLCWAGWLDEAMKFLEDMLEKGITPTVVAFNSIIAAYSRAGLEEK 377

Query: 250 AKGNTSAALELH--------EEFVNGNGELGVICHPDVLSYCSI-----INSLCKDVLVD 296
           A       ++             + G  +L  +     L Y  I     IN     +L+D
Sbjct: 378 AYKAYRMMVKFGLFPSSLTCSSLIMGLSKLWRLQEARDLLYEMIVEGLPINKAAFTLLLD 437

Query: 297 ---------KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347
                     A  L+ +M+ RGI PD V +S+ I+G  ++G +D+A  +F+ +  +G +P
Sbjct: 438 GYFRMGDVAGAYSLWNEMEGRGIHPDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMP 497

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELF 394
           +   YN+LI  +    +++EAL L  EM   G+ PD                +  A+++F
Sbjct: 498 NNFVYNSLIRGFCNSGRLQEALMLEREMARKGLLPDIFTTNIIINGLCKEGRMKSASDVF 557

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
           R +H+T    D+  +N L+DG CK++   S  E+  K+   G +P++ TY + + GLC  
Sbjct: 558 RNMHHTGLIPDIVTYNTLIDGYCKAFDTVSTDEVVNKMYATGWDPDITTYNIRLHGLCTG 617

Query: 455 GGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEIT 495
                            R+  +A+ +L ++    V PD +T
Sbjct: 618 -----------------RKMSRAVMMLEELISAGVVPDTVT 641



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 102/393 (25%), Positives = 174/393 (44%), Gaps = 40/393 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L++A+ F   M+    TP + +FNS++ A +              +   GL P  ++ + 
Sbjct: 340 LDEAMKFLEDMLEKGITPTVVAFNSIIAAYSRAGLEEKAYKAYRMMVKFGLFPSSLTCSS 399

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+    K+  + +A   L  ++ +    +      L+ G    G    A  L+ +     
Sbjct: 400 LIMGLSKLWRLQEARDLLYEMIVEGLPINKAAFTLLLDGYFRMGDVAGAYSLWNEMEG-- 457

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
               + P+ + +++ I+GL   G V++   +FL M  +G  P+ FVYNSLIR +C +   
Sbjct: 458 --RGIHPDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPNNFVYNSLIRGFCNS--- 512

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
               G    AL L  E     G L     PD+ +   IIN LCK+  +  A ++F +M  
Sbjct: 513 ----GRLQEALMLEREMAR-KGLL-----PDIFTTNIIINGLCKEGRMKSASDVFRNMHH 562

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
            G+IPD+V Y++LIDGYC         ++   + + G  PD ++YN  ++      K+  
Sbjct: 563 TGLIPDIVTYNTLIDGYCKAFDTVSTDEVVNKMYATGWDPDITTYNIRLHGLCTGRKMSR 622

Query: 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
           A+ +  E+IS GV PD                         +N +++G+C    L  A  
Sbjct: 623 AVMMLEELISAGVVPDT----------------------VTYNTVMNGVCTD-VLERAMI 659

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
           +  KL +    PNVVT  +++   C +G  EK 
Sbjct: 660 VTAKLLKMAFVPNVVTANLLLSHFCKQGMPEKT 692



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 102/410 (24%), Positives = 180/410 (43%), Gaps = 38/410 (9%)

Query: 78  MIHMQPTPFMPSFNSLLGALAGK---KYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134
           MIH  P P   +FN+++     K   K   + +C+ ++       PD  + NIL+N +C 
Sbjct: 140 MIHQGPRPCNRNFNAVILGFCRKGHVKVGESLLCVMQKFKC---QPDVYAYNILINAYCT 196

Query: 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194
                DA   +  ++    +P +VT G +I   C QG   EA  LF            IP
Sbjct: 197 RGQTFDALGWMRFMIDNGCTPSLVTFGTVINAFCNQGNMMEARNLFDGMK----EAGHIP 252

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           NV+CY ++++G  K   + +  +L+ +MK + + PD   +N L+  +      ED     
Sbjct: 253 NVVCYNTLMNGYVKARDIGQANMLYEEMKSKAVAPDCTTFNILVAGHYRYGREED----- 307

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
                  +  +    + G +    + + C  ++ LC    +D+A +   DM  +GI P V
Sbjct: 308 ------RDRLLRDLSQSGSLSISSLYNIC--VSGLCWAGWLDEAMKFLEDMLEKGITPTV 359

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           V ++S+I  Y   G  + A K +  +   G  P + + ++LI   SK+ +++EA  L  E
Sbjct: 360 VAFNSIIAAYSRAGLEEKAYKAYRMMVKFGLFPSSLTCSSLIMGLSKLWRLQEARDLLYE 419

Query: 375 MISMGVRPDNSC--------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           MI  G+ P N                +  A  L+  +       D   F+  ++GL    
Sbjct: 420 MIVEGL-PINKAAFTLLLDGYFRMGDVAGAYSLWNEMEGRGIHPDAVAFSAFINGLSIVG 478

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            +  A+++F ++ + G  PN   Y  +I G C  G +++A  L  +M  K
Sbjct: 479 LVDEAYDVFLQMSKKGFMPNNFVYNSLIRGFCNSGRLQEALMLEREMARK 528



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 99/454 (21%), Positives = 179/454 (39%), Gaps = 83/454 (18%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           R+  +GL P   ++ IL     ++      +  L  ++ +   P       +I G C +G
Sbjct: 104 RMREVGLRPSSSAITILFKLLLRIGDHGSVWKLLRGMIHQGPRPCNRNFNAVILGFCRKG 163

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
                  L      F C+P+V      Y  +I+  C  G           M   G  P  
Sbjct: 164 HVKVGESLLCVMQKFKCQPDVYA----YNILINAYCTRGQTFDALGWMRFMIDNGCTPSL 219

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
             + ++I  +C        +GN   A  L +    G  E G I  P+V+ Y +++N   K
Sbjct: 220 VTFGTVINAFC-------NQGNMMEARNLFD----GMKEAGHI--PNVVCYNTLMNGYVK 266

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY--------------------------- 324
              + +A  L+ +MKS+ + PD   ++ L+ G+                           
Sbjct: 267 ARDIGQANMLYEEMKSKAVAPDCTTFNILVAGHYRYGREEDRDRLLRDLSQSGSLSISSL 326

Query: 325 --------CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
                   C  G +D+A K    +  +G  P   ++N++I +YS+    E+A   Y  M+
Sbjct: 327 YNICVSGLCWAGWLDEAMKFLEDMLEKGITPTVVAFNSIIAAYSRAGLEEKAYKAYRMMV 386

Query: 377 SMGVRPD----NSCILEAAELFRTLHNTKFELDLTV---------FNCLVDGLCKSWRLR 423
             G+ P     +S I+  ++L+R         ++ V         F  L+DG  +   + 
Sbjct: 387 KFGLFPSSLTCSSLIMGLSKLWRLQEARDLLYEMIVEGLPINKAAFTLLLDGYFRMGDVA 446

Query: 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK------------I 471
            A+ L+ ++   G  P+ V ++  I GL I G +++AYD+   M +K            I
Sbjct: 447 GAYSLWNEMEGRGIHPDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPNNFVYNSLI 506

Query: 472 R------ECLKAIELLHKMAKRYVKPDEITVSIL 499
           R         +A+ L  +MA++ + PD  T +I+
Sbjct: 507 RGFCNSGRLQEALMLEREMARKGLLPDIFTTNII 540



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 22/137 (16%)

Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL-----HNTKF 402
           D S  +TL+  + K+E   EAL + G M  +G+RP +S I     LF+ L     H + +
Sbjct: 78  DFSVLDTLMRGFLKVEMGCEALEIVGRMREVGLRPSSSAI---TILFKLLLRIGDHGSVW 134

Query: 403 ELDLTV-----------FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
           +L   +           FN ++ G C+   ++    L   + ++  +P+V  Y ++I   
Sbjct: 135 KLLRGMIHQGPRPCNRNFNAVILGFCRKGHVKVGESLLCVMQKFKCQPDVYAYNILINAY 194

Query: 452 CIEGGIEKAYDLLPDME 468
           C  G   + +D L  M 
Sbjct: 195 CTRG---QTFDALGWMR 208


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 120/462 (25%), Positives = 199/462 (43%), Gaps = 74/462 (16%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           L + GL PD VS   ++   CK   +S+A    G++  +   P       +I G    G+
Sbjct: 278 LKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAGQ 337

Query: 173 FTEASGLFTKFVAFDCRPNVI------------------------------PNVICYASI 202
           F  A  L  +     C P+V+                              PN   Y  I
Sbjct: 338 FENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKDAEPNSSTYNII 397

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
           ID LC  G V +  ++  +M+  G++P+    N ++   C A  +E A          +E
Sbjct: 398 IDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPA----------YE 447

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
            F   + + G  C+P+ ++YCS+I+ L K   VD A  LF +M   G   + VVY+SLI 
Sbjct: 448 MFETAS-QRG--CNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIR 504

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
            + + GR +D  K+F  +   GC PD +  NT ++   K   VE+  +++ ++   G  P
Sbjct: 505 NFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLP 564

Query: 383 D--NSCIL-----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
           D  +  IL           E + +F  +    F LD   +N +VDG CKS +L  A+E+ 
Sbjct: 565 DVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVL 624

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KI 471
           +++      P V TY  +I GL     +++AY L  + +                   K+
Sbjct: 625 EEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKV 684

Query: 472 RECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECM 513
               +A  +L +M K+ + P+  T + L + L K E  +E +
Sbjct: 685 GRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEAL 726



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 139/541 (25%), Positives = 224/541 (41%), Gaps = 104/541 (19%)

Query: 36  PSSLHSNSVST-------VEEKTKLLKYLSENSKSGEVELN---DALCFFN-----YMI- 79
           PS +  NS+ T       V+E   L + + ++++      N   D LC        YMI 
Sbjct: 355 PSVVSFNSILTCLGKKRKVDEALTLFEAMKKDAEPNSSTYNIIIDMLCMAGKVEEAYMIR 414

Query: 80  ----HMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKM 135
               H    P + + N ++  L   K +     + E  +  G  P+ V+   L++   K 
Sbjct: 415 DEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKK 474

Query: 136 IGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNV--- 192
             V DA+     +L    + + V    LIR   M G+  +   +F +     C+P++   
Sbjct: 475 GNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLL 534

Query: 193 ----------------------------IPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224
                                       +P+V  Y+ +I GL K G   +   +F  MK 
Sbjct: 535 NTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQ 594

Query: 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCS 284
           +G   DA  YN+++  +C         G    A E+ EE             P V +Y S
Sbjct: 595 QGFALDARAYNAVVDGFC-------KSGKLDKAYEVLEEMKVKR------VPPTVATYGS 641

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           II+ L K   +D+A  LF + KS+GI  +V+VYSSLIDG+  +GRID+A  +   +  +G
Sbjct: 642 IIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKG 701

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL 404
             P+  ++N+L+++  K E++ EAL  +  M  M   P+                     
Sbjct: 702 LTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNT-------------------- 741

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
               ++ L++GLC+  +   A+  ++++ + G  PNVVTYT MI GL   G I  A  L 
Sbjct: 742 --YTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLF 799

Query: 465 ---------PDME------EKIRECLKAIELLHKMAKRYVKPDEITVSI---LEELLNKD 506
                    PD        E +    +AIE  H   +  +K   I V     L + LNK 
Sbjct: 800 ERFKANGGTPDAASFNALIEGMSHANRAIEAYHVFEETRLKGCRINVKACISLLDALNKA 859

Query: 507 E 507
           E
Sbjct: 860 E 860



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 141/286 (49%), Gaps = 27/286 (9%)

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
            V  + +++  L ++G V     L  ++KG  + PD  +YN  I  +  A       GN 
Sbjct: 216 GVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKA-------GNV 268

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
             A +   E  +          PD +SY S+I  LCK   + +A+ELF  M++   +P  
Sbjct: 269 DMAWKFFHELKSQG------LKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCA 322

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
             Y+++I GY   G+ ++A KL   ++  GCIP   S+N+++    K  KV+EAL+L+ E
Sbjct: 323 YAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLF-E 381

Query: 375 MISMGVRPDNS---------CI---LEAAELFR-TLHNTKFELDLTVFNCLVDGLCKSWR 421
            +     P++S         C+   +E A + R  + +     +L   N +VD LCK+ +
Sbjct: 382 AMKKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKK 441

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
              A+E+F+   + G  PN VTY  +I GL  +G ++ AY L  +M
Sbjct: 442 FEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENM 487



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 148/349 (42%), Gaps = 55/349 (15%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G+VE   A+  F  +      P + S++ L+  L           +   +   G   D
Sbjct: 543 KAGDVEKGRAI--FEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALD 600

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             + N +++ FCK   +  A+  L  +  K   P V T G +I GL    +  EA  LF 
Sbjct: 601 ARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFE 660

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           +  +      +  NVI Y+S+IDG  K G +++  ++  +M  +G+ P+ + +NSL+   
Sbjct: 661 EAKS----KGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDAL 716

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
                          A E++E  +       + C P+  +Y  +IN LC+    +KA   
Sbjct: 717 V-------------KAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVF 763

Query: 302 FLDMKSRGIIPDVVVY-----------------------------------SSLIDGYCL 326
           + +M+ +G++P+VV Y                                   ++LI+G   
Sbjct: 764 WQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKANGGTPDAASFNALIEGMSH 823

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL-YGE 374
             R  +A  +F     +GC  +  +  +L+++ +K E +E+A  + +GE
Sbjct: 824 ANRAIEAYHVFEETRLKGCRINVKACISLLDALNKAECLEQAAVVGFGE 872



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 112/275 (40%), Gaps = 50/275 (18%)

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARK 335
            P   +Y  +I ++ +    ++A EL   M+  G    V ++++L+      GR++ A  
Sbjct: 179 RPAFSAYTVLIGAMAEARQPERALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALA 238

Query: 336 LFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395
           L   ++     PD   YN  I+ + K   V+ A   + E+ S G++PD+           
Sbjct: 239 LVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDD----------- 287

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
                        +  ++  LCK+ RL  A ELF ++      P    Y  MI G    G
Sbjct: 288 -----------VSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAG 336

Query: 456 GIEKAYDLLPDMEEK-----------IRECL-------KAIELLHKMAKRYVKPDEITVS 497
             E AY LL  ++E+           I  CL       +A+ L   M K+  +P+  T +
Sbjct: 337 QFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAM-KKDAEPNSSTYN 395

Query: 498 ILEELL---NKDENCH------ECMNLLPSFLSRN 523
           I+ ++L    K E  +      E   L P+ L+ N
Sbjct: 396 IIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVN 430



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 13/164 (7%)

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           + L+       R+DDA ++  ++      P  S+Y  LI + ++  + E AL L  +M  
Sbjct: 151 ADLVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERALELLRQMQE 210

Query: 378 MG-----------VR--PDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424
           +G           VR       +  A  L   +  +  E D+ ++N  +D   K+  +  
Sbjct: 211 VGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDM 270

Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           AW+ F +L   G +P+ V+YT MI  LC  G + +A +L   ME
Sbjct: 271 AWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQME 314


>gi|302791145|ref|XP_002977339.1| hypothetical protein SELMODRAFT_32460 [Selaginella moellendorffii]
 gi|300154709|gb|EFJ21343.1| hypothetical protein SELMODRAFT_32460 [Selaginella moellendorffii]
          Length = 336

 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 154/322 (47%), Gaps = 38/322 (11%)

Query: 147 RILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGL 206
           +IL K+ + ++ T   L+    +QG  T A  +F +    +     +PN++ Y S+I GL
Sbjct: 23  KILDKMPAWNLATWNTLLTSHSLQGNLTGAIRVFHEMPDKN-----LPNMVTYNSLIHGL 77

Query: 207 CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266
           C    V+   +L  +M   G  PD   YN+LI   C           T    E +  F  
Sbjct: 78  CMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLC----------KTGRVPEANRLF-- 125

Query: 267 GNGELGV-ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
             GE+    C+PDV++Y  +I   CK   ++ A  LF DM  +  +PDVV + +L++GYC
Sbjct: 126 --GEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVEGYC 183

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385
             G +DDA +L   + +  C PD  +Y +L++ + K++++ EA  +   M   G      
Sbjct: 184 NAGLVDDAERLLEEMVASDCSPDVYTYTSLVDDFCKVKRMVEAHRVLKRMAKGG------ 237

Query: 386 CILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT 445
                        N   + D+  +  ++DGLC++ R+ +A EL + + + G  P    Y 
Sbjct: 238 ------------SNKNCKADMFAYRMMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYV 285

Query: 446 VMICGLCIEGGIEKAYDLLPDM 467
            +I GLC    + KA ++L +M
Sbjct: 286 ALIRGLCQGKELRKAMEVLEEM 307



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 125/270 (46%), Gaps = 22/270 (8%)

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
           LP+ V+ N L++  C   GV    + +  +      PD+ T   LI GLC  G+  EA+ 
Sbjct: 64  LPNMVTYNSLIHGLCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGRVPEANR 123

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           LF +  A  C P+VI     Y+ +I G CK   +N    LF DM  +   PD   + +L+
Sbjct: 124 LFGEMKAKFCNPDVIT----YSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLV 179

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
             YC A   +DA+        L EE V  +      C PDV +Y S+++  CK   + +A
Sbjct: 180 EGYCNAGLVDDAE-------RLLEEMVASD------CSPDVYTYTSLVDDFCKVKRMVEA 226

Query: 299 KELFLDMKSRG----IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
             +   M   G       D+  Y  ++DG C  GR+  A +L  +I+  G  P    Y  
Sbjct: 227 HRVLKRMAKGGSNKNCKADMFAYRMMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVA 286

Query: 355 LINSYSKIEKVEEALSLYGEM-ISMGVRPD 383
           LI    + +++ +A+ +  EM +S   RP+
Sbjct: 287 LIRGLCQGKELRKAMEVLEEMTLSRKGRPN 316



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 167/354 (47%), Gaps = 57/354 (16%)

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
           + +C+ +I  G  + G +++   +   M    +      +N+L+  +         +GN 
Sbjct: 1   DAVCWNAIATGFSQCGLLDETTKILDKMPAWNLA----TWNTLLTSH-------SLQGNL 49

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
           + A+ +  E  + N        P++++Y S+I+ LC    VD    L  +M + G +PD+
Sbjct: 50  TGAIRVFHEMPDKN-------LPNMVTYNSLIHGLCMTNGVDSTLLLMEEMTATGCLPDI 102

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
             Y++LIDG C  GR+ +A +LF  ++++ C PD  +Y+ LI  + K++++  A +L+ +
Sbjct: 103 NTYNTLIDGLCKTGRVPEANRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDD 162

Query: 375 MISMGVRPD------------NSCILEAAE-LFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
           M+     PD            N+ +++ AE L   +  +    D+  +  LVD  CK  R
Sbjct: 163 MLKQAALPDVVTFPTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDDFCKVKR 222

Query: 422 LRSAWELFKKLPRYGPEPN----VVTYTVMICGLCIEGGIEKAYDLLPDMEE-------- 469
           +  A  + K++ + G   N    +  Y +M+ GLC  G +  A +LL  +++        
Sbjct: 223 MVEAHRVLKRMAKGGSNKNCKADMFAYRMMMDGLCRTGRMSAALELLEAIKQSGTPPRHD 282

Query: 470 ----------KIRECLKAIELLHKMA-KRYVKPD-EITVSILEELLNKDENCHE 511
                     + +E  KA+E+L +M   R  +P+ +   ++++EL    E  HE
Sbjct: 283 IYVALIRGLCQGKELRKAMEVLEEMTLSRKGRPNAKAYKAVIQELAR--EGRHE 334



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 133/310 (42%), Gaps = 17/310 (5%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
           S S +  L  A+  F+ M   +  P M ++NSL+  L       + + L E +   G LP
Sbjct: 42  SHSLQGNLTGAIRVFHEMPD-KNLPNMVTYNSLIHGLCMTNGVDSTLLLMEEMTATGCLP 100

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
           D  + N L++  CK   V +A    G +  K  +PDV+T  CLI G C   +   A  LF
Sbjct: 101 DINTYNTLIDGLCKTGRVPEANRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLF 160

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
              +    +   +P+V+ + ++++G C  G V+    L  +M      PD + Y SL+  
Sbjct: 161 DDML----KQAALPDVVTFPTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDD 216

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVN-GNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
           +C               +E H        G     C  D+ +Y  +++ LC+   +  A 
Sbjct: 217 FC----------KVKRMVEAHRVLKRMAKGGSNKNCKADMFAYRMMMDGLCRTGRMSAAL 266

Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE-SEGCIPDTSSYNTLINS 358
           EL   +K  G  P   +Y +LI G C    +  A ++   +  S    P+  +Y  +I  
Sbjct: 267 ELLEAIKQSGTPPRHDIYVALIRGLCQGKELRKAMEVLEEMTLSRKGRPNAKAYKAVIQE 326

Query: 359 YSKIEKVEEA 368
            ++  + E+A
Sbjct: 327 LAREGRHEKA 336


>gi|255563546|ref|XP_002522775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538013|gb|EEF39626.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1071

 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 109/429 (25%), Positives = 196/429 (45%), Gaps = 37/429 (8%)

Query: 53  LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSER 112
           LL  L +  K G V L     FF  M+  +  P + +FN L+  L  +        L ++
Sbjct: 139 LLGKLVKERKVGAVWL-----FFKEMLARRVCPDVSTFNILINVLCVEGKLKKAGYLLKK 193

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +   G +P  V+ N ++N +CK      A   + ++  K    D  T   L+  LC   +
Sbjct: 194 MEESGYVPSVVTYNTVLNWYCKKGRYKAALELIDQMGSKGIEADACTYNMLVDDLCKNNR 253

Query: 173 FTEASGLFTKFVAFDCRPNVI-PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
             +   L  K      R  +I PN I Y SII+G  K+G +     +F +M    + P+ 
Sbjct: 254 SAKGYLLLKKM-----RKRMISPNEITYNSIINGFVKEGKIGAATRIFQEMSMLNLLPNC 308

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
             YN+LI  +C   N+E A       LE+ E      G       P+ +SY +++N LC+
Sbjct: 309 VTYNALIDGHCHDGNFEQA----LTILEMME----ATGP-----KPNEVSYSALLNGLCR 355

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
               + +K +   M+  G+I   + Y+++IDG C  G ++++ KL   +  +G +PD  +
Sbjct: 356 HAKFELSKSILERMRMNGMIVGCIAYTAMIDGLCRNGLLNESVKLLDKMLKDGVVPDVVT 415

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPD---------NSC----ILEAAELFRTLH 398
           ++ LIN + ++ K++    +  +M   G+ P+         N C    ++EA +++  + 
Sbjct: 416 FSVLINGFCRVGKIKNVKEIICKMYKAGLAPNSIIYTTLIYNYCKTGDVVEAFKVYVAMS 475

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
              ++ +  + N LV  LCK  ++  A   F  + + G  PN +T+  +I G    G   
Sbjct: 476 RIGYDANCFICNVLVSSLCKDGKVGVAEYFFHHMSKIGNVPNSITFDCIINGYGNSGNGL 535

Query: 459 KAYDLLPDM 467
           KA+ +  +M
Sbjct: 536 KAFSMFDEM 544



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 162/366 (44%), Gaps = 30/366 (8%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  P   + N+L+    K   V   ++    +L +   PDV T   LI  LC++GK  +A
Sbjct: 128 GFNPSVYTCNMLLGKLVKERKVGAVWLFFKEMLARRVCPDVSTFNILINVLCVEGKLKKA 187

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L  K          +P+V+ Y ++++  CK G       L   M  +GI  DA  YN 
Sbjct: 188 GYLLKKME----ESGYVPSVVTYNTVLNWYCKKGRYKAALELIDQMGSKGIEADACTYNM 243

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           L+   C        K N SA   L  + +        +  P+ ++Y SIIN   K+  + 
Sbjct: 244 LVDDLC--------KNNRSAKGYLLLKKMRKR-----MISPNEITYNSIINGFVKEGKIG 290

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A  +F +M    ++P+ V Y++LIDG+C  G  + A  +   +E+ G  P+  SY+ L+
Sbjct: 291 AATRIFQEMSMLNLLPNCVTYNALIDGHCHDGNFEQALTILEMMEATGPKPNEVSYSALL 350

Query: 357 NSYSKIEKVEEALSLYGEM---------ISMGVRPDNSC----ILEAAELFRTLHNTKFE 403
           N   +  K E + S+   M         I+     D  C    + E+ +L   +      
Sbjct: 351 NGLCRHAKFELSKSILERMRMNGMIVGCIAYTAMIDGLCRNGLLNESVKLLDKMLKDGVV 410

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D+  F+ L++G C+  ++++  E+  K+ + G  PN + YT +I   C  G + +A+ +
Sbjct: 411 PDVVTFSVLINGFCRVGKIKNVKEIICKMYKAGLAPNSIIYTTLIYNYCKTGDVVEAFKV 470

Query: 464 LPDMEE 469
              M  
Sbjct: 471 YVAMSR 476



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 100/455 (21%), Positives = 191/455 (41%), Gaps = 81/455 (17%)

Query: 81  MQPTPFMPS---FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
           M+ + ++PS   +N++L     K  Y   + L +++ + G+  D  + N+L++  CK   
Sbjct: 194 MEESGYVPSVVTYNTVLNWYCKKGRYKAALELIDQMGSKGIEADACTYNMLVDDLCKNNR 253

Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
            +  ++ L ++ +++ SP+ +T   +I G   +GK   A+ +F +        N++PN +
Sbjct: 254 SAKGYLLLKKMRKRMISPNEITYNSIINGFVKEGKIGAATRIFQEMSML----NLLPNCV 309

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG----- 252
            Y ++IDG C DG   +   +   M+  G  P+   Y++L+   C    +E +K      
Sbjct: 310 TYNALIDGHCHDGNFEQALTILEMMEATGPKPNEVSYSALLNGLCRHAKFELSKSILERM 369

Query: 253 ---NTSAALELHEEFVNG---NGEL-------------GVICHPDVLSYCSIINSLCKDV 293
                      +   ++G   NG L             GV+  PDV+++  +IN  C+  
Sbjct: 370 RMNGMIVGCIAYTAMIDGLCRNGLLNESVKLLDKMLKDGVV--PDVVTFSVLINGFCRVG 427

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC-------- 345
            +   KE+   M   G+ P+ ++Y++LI  YC  G + +A K++V++   G         
Sbjct: 428 KIKNVKEIICKMYKAGLAPNSIIYTTLIYNYCKTGDVVEAFKVYVAMSRIGYDANCFICN 487

Query: 346 ---------------------------IPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378
                                      +P++ +++ +IN Y       +A S++ EMI  
Sbjct: 488 VLVSSLCKDGKVGVAEYFFHHMSKIGNVPNSITFDCIINGYGNSGNGLKAFSMFDEMIKA 547

Query: 379 GVRPDN-------------SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
           G  P +                 EA  L   LH     +D   +N ++    KS  L  A
Sbjct: 548 GHHPSHFTYGGLLKALCRAGKFKEAKRLLDKLHYIPSAVDTVTYNTILVETFKSGMLTDA 607

Query: 426 WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
             LF ++ +    P+  TY ++  GL   G +  A
Sbjct: 608 VALFDEMVQRNVLPDSYTYAIIFAGLIRRGKMVAA 642



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 100/390 (25%), Positives = 170/390 (43%), Gaps = 38/390 (9%)

Query: 98   AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC---KMIGVSDAFVALGRILRKVFS 154
            AG+     + C  E +   GL  D ++ N+++N +    KM    D F  +   +    S
Sbjct: 672  AGQSKAALYFC--EDMEKNGLCADLIATNVILNGYSRMGKMAKAGDIFTMMWSGI--TIS 727

Query: 155  PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
            P + T   L+ G   +   ++ S L+   +    R  + P+ +   S+I G CK   ++ 
Sbjct: 728  PSLATYNILLHGYAKKKNLSKCSNLYNIMM----RTGIFPDKLTCHSLILGFCKSAMLDV 783

Query: 215  VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
               L   M   G+  D   +N LI  YC      D  G     + +   F          
Sbjct: 784  GLKLLKKMLLDGVAVDQCTFNMLIMKYC----ETDEVGKAFDLVNIMNLFD--------- 830

Query: 275  CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
              PD+ ++ SII+ L +   V ++  L  +M  RG IPD   Y +L++  C MG I  A 
Sbjct: 831  IFPDMTTHDSIISVLSRVSTVQESHLLLHEMLERGCIPDRRQYIALVNRMCRMGHIHGAF 890

Query: 335  KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----------- 383
            KL   +E+ G      + + L+   +K  KVEEA  +   M+   + P            
Sbjct: 891  KLKDEMEALGISSGDVAESALVRGLAKCGKVEEAKLVLDFMLRKSLIPTIATFTTLMHMF 950

Query: 384  --NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441
              N  ++EA +L  T+     +LD+  +N L+ GLC    + SA +L+K++ + G  PN+
Sbjct: 951  CRNESLVEALKLKDTMDFCDVKLDVIAYNVLISGLCADGDVASALKLYKEIKQRGLWPNM 1010

Query: 442  VTYTVMICGLCIEG-GIEKAYDLLPDMEEK 470
             TY ++I  +      + K   LL D++E+
Sbjct: 1011 TTYCILIDAIFTNDISLAKGEVLLKDLQER 1040



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 104/475 (21%), Positives = 194/475 (40%), Gaps = 47/475 (9%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
            AL     M    P P   S+++LL  L     +     + ER+   G++   ++   ++
Sbjct: 326 QALTILEMMEATGPKPNEVSYSALLNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAMI 385

Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
           +  C+   ++++   L ++L+    PDVVT   LI G C  GK      +  K      +
Sbjct: 386 DGLCRNGLLNESVKLLDKMLKDGVVPDVVTFSVLINGFCRVGKIKNVKEIICKMY----K 441

Query: 190 PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249
             + PN I Y ++I   CK G V +   +++ M   G   + F+ N L+   C     +D
Sbjct: 442 AGLAPNSIIYTTLIYNYCKTGDVVEAFKVYVAMSRIGYDANCFICNVLVSSLC-----KD 496

Query: 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG 309
            K      + + E F +   ++G +  P+ +++  IIN         KA  +F +M   G
Sbjct: 497 GK------VGVAEYFFHHMSKIGNV--PNSITFDCIINGYGNSGNGLKAFSMFDEMIKAG 548

Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
             P    Y  L+   C  G+  +A++L   +       DT +YNT++    K   + +A+
Sbjct: 549 HHPSHFTYGGLLKALCRAGKFKEAKRLLDKLHYIPSAVDTVTYNTILVETFKSGMLTDAV 608

Query: 370 SLYGEMISMGVRPDN-------SCILEAAELFRTLH-------NTKFELDLTVFNCLVDG 415
           +L+ EM+   V PD+       + ++   ++   LH             +  ++   VDG
Sbjct: 609 ALFDEMVQRNVLPDSYTYAIIFAGLIRRGKMVAALHFYGNLLGKGAVSPEKVMYTTFVDG 668

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL 475
           L ++ + ++A    + + + G   +++   V++ G    G + KA D+   M   I    
Sbjct: 669 LFRAGQSKAALYFCEDMEKNGLCADLIATNVILNGYSRMGKMAKAGDIFTMMWSGIT--- 725

Query: 476 KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
                        + P   T +IL     K +N  +C NL    +       KLT
Sbjct: 726 -------------ISPSLATYNILLHGYAKKKNLSKCSNLYNIMMRTGIFPDKLT 767



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 91/413 (22%), Positives = 163/413 (39%), Gaps = 28/413 (6%)

Query: 71  ALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN 130
           A   F+ MI     P   ++  LL AL     +     L ++L+ I    D V+ N ++ 
Sbjct: 537 AFSMFDEMIKAGHHPSHFTYGGLLKALCRAGKFKEAKRLLDKLHYIPSAVDTVTYNTILV 596

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
              K   ++DA      ++++   PD  T   +  GL  +GK   A   +   +    + 
Sbjct: 597 ETFKSGMLTDAVALFDEMVQRNVLPDSYTYAIIFAGLIRRGKMVAALHFYGNLLG---KG 653

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
            V P  + Y + +DGL + G          DM+  G+  D    N ++  Y         
Sbjct: 654 AVSPEKVMYTTFVDGLFRAGQSKAALYFCEDMEKNGLCADLIATNVILNGY-------SR 706

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
            G  + A ++     +G     +   P + +Y  +++   K   + K   L+  M   GI
Sbjct: 707 MGKMAKAGDIFTMMWSG-----ITISPSLATYNILLHGYAKKKNLSKCSNLYNIMMRTGI 761

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
            PD +   SLI G+C    +D   KL   +  +G   D  ++N LI  Y + ++V +A  
Sbjct: 762 FPDKLTCHSLILGFCKSAMLDVGLKLLKKMLLDGVAVDQCTFNMLIMKYCETDEVGKAFD 821

Query: 371 LYGEMISMGVRPD---NSCILEAAELFRTLHNTKFEL----------DLTVFNCLVDGLC 417
           L   M    + PD   +  I+       T+  +   L          D   +  LV+ +C
Sbjct: 822 LVNIMNLFDIFPDMTTHDSIISVLSRVSTVQESHLLLHEMLERGCIPDRRQYIALVNRMC 881

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           +   +  A++L  ++   G     V  + ++ GL   G +E+A  +L  M  K
Sbjct: 882 RMGHIHGAFKLKDEMEALGISSGDVAESALVRGLAKCGKVEEAKLVLDFMLRK 934



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 13/196 (6%)

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           +I    ++ +V  A E F  M  RG  P V   + L+       ++      F  + +  
Sbjct: 104 LIRVYLREGMVGDALETFRLMGIRGFNPSVYTCNMLLGKLVKERKVGAVWLFFKEMLARR 163

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCI---------LEAA 391
             PD S++N LIN      K+++A  L  +M   G  P     N+ +           A 
Sbjct: 164 VCPDVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVLNWYCKKGRYKAAL 223

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
           EL   + +   E D   +N LVD LCK+ R    + L KK+ +    PN +TY  +I G 
Sbjct: 224 ELIDQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMISPNEITYNSIINGF 283

Query: 452 CIEGGIEKAYDLLPDM 467
             EG I  A  +  +M
Sbjct: 284 VKEGKIGAATRIFQEM 299



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 94/218 (43%), Gaps = 24/218 (11%)

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEA 390
           ++A+ +   +   G +   S +  L+N+Y   +       L   +I + +R     + +A
Sbjct: 64  ENAKSILKHLSQMG-VGSKSVFGALMNTYPLCKSNPSVFDL---LIRVYLRE--GMVGDA 117

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
            E FR +    F   +   N L+  L K  ++ + W  FK++      P+V T+ ++I  
Sbjct: 118 LETFRLMGIRGFNPSVYTCNMLLGKLVKERKVGAVWLFFKEMLARRVCPDVSTFNILINV 177

Query: 451 LCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPD 492
           LC+EG ++KA  LL  MEE                  K      A+EL+ +M  + ++ D
Sbjct: 178 LCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVLNWYCKKGRYKAALELIDQMGSKGIEAD 237

Query: 493 EITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
             T ++L + L K+    +   LL     R    +++T
Sbjct: 238 ACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMISPNEIT 275


>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
          Length = 769

 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 122/423 (28%), Positives = 181/423 (42%), Gaps = 54/423 (12%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSD-- 140
           P P +  FNSL+ +   +K Y     L  R+ T G  P +V  NI +   C    +    
Sbjct: 344 PNPSL--FNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPD 401

Query: 141 ----AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNV 196
               A    G +L      + V +    R LC  GKF +A  L  + +    R   +P+ 
Sbjct: 402 LLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMM----RKGFVPDT 457

Query: 197 ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSA 256
             Y+ +I  LC    V K  +LF +MK  G+ PD + Y  LI  +C A       G    
Sbjct: 458 STYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKA-------GLIEQ 510

Query: 257 ALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV 316
           A  L EE  +      V C P V++Y ++I++  K   V +A ++F  M   G  P+ V 
Sbjct: 511 AQWLFEEMRS------VGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVT 564

Query: 317 YSSLIDGYCLMGRIDDARKLFVSI----------------ESEGCIPDTSSYNTLINSYS 360
           Y +L+DG C  G I  A +++  +                +     P+  +Y  L++   
Sbjct: 565 YGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLC 624

Query: 361 KIEKVEEALSLYGEMISMGVRP---------DNSC----ILEAAELFRTLHNTKFELDLT 407
           K  KV+ A  L   M+S G  P         D  C    I  A E+F  +    +   + 
Sbjct: 625 KAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVH 684

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            +  L+D + K  RL  A ++  ++ +    PNVVTYT MI GLC  G  EKA  LL  M
Sbjct: 685 TYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLM 744

Query: 468 EEK 470
           EEK
Sbjct: 745 EEK 747



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 121/493 (24%), Positives = 183/493 (37%), Gaps = 103/493 (20%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           N+AL     +      P   ++N+L+  L+          + + ++  G   D  ++   
Sbjct: 191 NEALEELGRLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCF 250

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
            +  CK    +DA   L  I R+ F  D V    +I GL     F EA     +     C
Sbjct: 251 AHALCKEGRWADA---LDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSC 307

Query: 189 RPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVRV 217
            PNV+                               PN   + S++   C +        
Sbjct: 308 IPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYK 367

Query: 218 LFLDMKGRGIYPDAFVYNSLIRVYC-------------------------CAVNWEDAK- 251
           L   M   G  P   VYN  I   C                         C +N  +   
Sbjct: 368 LLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVAN 427

Query: 252 --------GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                   G    A +L +E +      G +  PD  +Y  +I  LC    V+KA  LF 
Sbjct: 428 FARCLCGVGKFDKAFQLIKEMMRK----GFV--PDTSTYSKVITFLCHATKVEKAFLLFQ 481

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
           +MK  G+ PDV  Y+ LID +C  G I+ A+ LF  + S GC P   +Y  LI++Y K +
Sbjct: 482 EMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAK 541

Query: 364 KVEEALSLYGEMISMGVRP---------DNSC----ILEAAELFRTLHNTKFELD----- 405
           +V +A  ++  M+  G RP         D  C    I +A E++  L  T    D     
Sbjct: 542 QVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYF 601

Query: 406 -----------LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
                      +  +  LVDGLCK+ ++  A EL   +   G EPN + Y  +I G C  
Sbjct: 602 PCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKA 661

Query: 455 GGIEKAYDLLPDM 467
           G I+ A ++   M
Sbjct: 662 GKIDSAQEVFLQM 674



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 92/440 (20%), Positives = 167/440 (37%), Gaps = 100/440 (22%)

Query: 147 RILRKVFSPDVVTLG----CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202
           R+LR++   D   LG     L+R  C  G + EA     +   F  RP+ +     Y ++
Sbjct: 160 RLLREIGEEDREVLGRLLNVLVRRCCRGGMWNEALEELGRLKDFGYRPSKVT----YNAL 215

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL-- 260
           +  L   G V+    +  +M   G   D F         C    W DA       L++  
Sbjct: 216 VQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADA-------LDMIE 268

Query: 261 HEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
            E+F             D +    +I+ L +    D+A      M+    IP+VV Y +L
Sbjct: 269 REDF-----------KLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTL 317

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           + G+    ++   +++   + +EGC P+ S +N+L++SY   +    A  L   M + G 
Sbjct: 318 LSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGC 377

Query: 381 RPD-----------------------------------NSCIL----------------- 388
            P                                     +C+L                 
Sbjct: 378 PPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGK 437

Query: 389 --EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTV 446
             +A +L + +    F  D + ++ ++  LC + ++  A+ LF+++   G  P+V TYT+
Sbjct: 438 FDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTI 497

Query: 447 MICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRY 488
           +I   C  G IE+A  L  +M                    K ++  +A ++ H+M    
Sbjct: 498 LIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAG 557

Query: 489 VKPDEITVSILEELLNKDEN 508
            +P+++T   L + L K  N
Sbjct: 558 CRPNDVTYGALVDGLCKAGN 577



 Score = 40.0 bits (92), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 4/95 (4%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           ++   G LP   +   L++   K   +  A   L ++L+   +P+VVT   +I GLC  G
Sbjct: 673 QMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIG 732

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGL 206
           +  +A  L +      C PNV+     Y ++IDGL
Sbjct: 733 ESEKALKLLSLMEEKGCSPNVVT----YTALIDGL 763


>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Brachypodium distachyon]
          Length = 676

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/415 (26%), Positives = 193/415 (46%), Gaps = 44/415 (10%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L  R+  +G  P+ V+    ++  CK   V  AF  L  ++ K   P+V T   LI GLC
Sbjct: 242 LFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTHTSLINGLC 301

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
             G    A  LF K +      +  PNV  Y  +I G CK+G + +  +L   M  +G+ 
Sbjct: 302 KIGWTERAFRLFLKLIK---SSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLA 358

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           P+   Y +LI  +C        +G+ + A EL    +N     G    P++ +Y ++I+ 
Sbjct: 359 PNTNTYTTLISGHC-------KEGSFNCAFEL----MNKMRREGF--QPNIYTYNALIDG 405

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           LCK   + +A ++     ++G+  D V Y+ +I  +C  G I  A  LF  +   GC PD
Sbjct: 406 LCKKGKIQEAYKVLRMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRMAENGCHPD 465

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTV 408
             +Y TLI  Y +  ++EE+  L+ + +++ + P                          
Sbjct: 466 IHTYTTLIARYCQQRQMEESQKLFDKCLAIELVPTKQ----------------------T 503

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM- 467
           +  ++ G CK  +  SA  +F+++ + G + + +TY  +I GLC E  +E+A  L   M 
Sbjct: 504 YTSMIAGYCKVGKSTSALRVFERMVQNGCQADSITYGALISGLCKESRLEEARALYEGML 563

Query: 468 EEKIREC-LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
           ++++  C +  + L  +  +R  +   + VSIL+ L  + +N    +N+L   LS
Sbjct: 564 DKRLVPCEVTPVTLAFEYCRR--EKAVVAVSILDRLDKRRKN--HTVNVLVRKLS 614



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 171/363 (47%), Gaps = 34/363 (9%)

Query: 157 VVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVR 216
           V T   ++R     G F  A  +F   V    R  ++P+   + ++I G C+DG + +V 
Sbjct: 149 VETANWVLRAGLDTGSFAYARKVFDGMVT---RGGLLPDARSFRALIVGCCRDGRMEEVD 205

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            L   M+G+G   D      ++RV+C        KG      EL    +    E+G    
Sbjct: 206 ALLTVMQGQGFCLDNATCTVIVRVFC-------QKGRFRDVSELFRRML----EMGT--P 252

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           P+V++Y + I+ LCK   V +A  +  +M ++G+ P+V  ++SLI+G C +G  + A +L
Sbjct: 253 PNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTHTSLINGLCKIGWTERAFRL 312

Query: 337 FVS-IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE------ 389
           F+  I+S    P+  +Y  +I  Y K  K+  A  L G M+  G+ P+ +          
Sbjct: 313 FLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLISGHC 372

Query: 390 -------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
                  A EL   +    F+ ++  +N L+DGLCK  +++ A+++ +     G + + V
Sbjct: 373 KEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGKIQEAYKVLRMANNQGLQLDKV 432

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEEL 502
           TYTVMI   C +G I  A DL   M E    C   I     +  RY +  ++  S  ++L
Sbjct: 433 TYTVMITEHCKQGHITYALDLFNRMAEN--GCHPDIHTYTTLIARYCQQRQMEES--QKL 488

Query: 503 LNK 505
            +K
Sbjct: 489 FDK 491



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 153/360 (42%), Gaps = 40/360 (11%)

Query: 74  FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
            F  M+ M   P + ++ + +  L  + Y      + E +   GL P+  +   L+N  C
Sbjct: 242 LFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTHTSLINGLC 301

Query: 134 KMIGVSDAFVALGRILR-KVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNV 192
           K+     AF    ++++   + P+V T   +I G C +GK   A  L  + V       +
Sbjct: 302 KIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMV----EQGL 357

Query: 193 IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252
            PN   Y ++I G CK+G  N    L   M+  G  P+ + YN+LI   C        KG
Sbjct: 358 APNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLC-------KKG 410

Query: 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
               A ++     N   +L      D ++Y  +I   CK   +  A +LF  M   G  P
Sbjct: 411 KIQEAYKVLRMANNQGLQL------DKVTYTVMITEHCKQGHITYALDLFNRMAENGCHP 464

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
           D+  Y++LI  YC   ++++++KLF    +   +P   +Y ++I  Y K+ K   AL ++
Sbjct: 465 DIHTYTTLIARYCQQRQMEESQKLFDKCLAIELVPTKQTYTSMIAGYCKVGKSTSALRVF 524

Query: 373 GEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
             M+  G + D+                        +  L+ GLCK  RL  A  L++ +
Sbjct: 525 ERMVQNGCQADS----------------------ITYGALISGLCKESRLEEARALYEGM 562



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 104/410 (25%), Positives = 165/410 (40%), Gaps = 49/410 (11%)

Query: 146 GRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDG 205
           G + R    PD  +   LI G C  G+  E   L T       +   + N  C   I+  
Sbjct: 174 GMVTRGGLLPDARSFRALIVGCCRDGRMEEVDALLT---VMQGQGFCLDNATC-TVIVRV 229

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
            C+ G    V  LF  M   G  P+   Y + I   C        +     A  + EE V
Sbjct: 230 FCQKGRFRDVSELFRRMLEMGTPPNVVNYTAWIDGLC-------KRAYVKQAFYVLEEMV 282

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM-KSRGIIPDVVVYSSLIDGY 324
                      P+V ++ S+IN LCK    ++A  LFL + KS    P+V  Y+ +I GY
Sbjct: 283 AKG------LKPNVYTHTSLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGY 336

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP-- 382
           C  G++  A  L   +  +G  P+T++Y TLI+ + K      A  L  +M   G +P  
Sbjct: 337 CKEGKLARAEMLLGRMVEQGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNI 396

Query: 383 -------DNSC----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
                  D  C    I EA ++ R  +N   +LD   +  ++   CK   +  A +LF +
Sbjct: 397 YTYNALIDGLCKKGKIQEAYKVLRMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNR 456

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEK---------AYDLLPDMEE---------KIRE 473
           +   G  P++ TYT +I   C +  +E+         A +L+P  +          K+ +
Sbjct: 457 MAENGCHPDIHTYTTLIARYCQQRQMEESQKLFDKCLAIELVPTKQTYTSMIAGYCKVGK 516

Query: 474 CLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
              A+ +  +M +   + D IT   L   L K+    E   L    L + 
Sbjct: 517 STSALRVFERMVQNGCQADSITYGALISGLCKESRLEEARALYEGMLDKR 566



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 121/287 (42%), Gaps = 17/287 (5%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + ++  ++G    +        L  R+   GL P+  +   L++  CK    + AF  
Sbjct: 324 PNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLISGHCKEGSFNCAFEL 383

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           + ++ R+ F P++ T   LI GLC +GK  EA     K +       +  + + Y  +I 
Sbjct: 384 MNKMRREGFQPNIYTYNALIDGLCKKGKIQEA----YKVLRMANNQGLQLDKVTYTVMIT 439

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
             CK G +     LF  M   G +PD   Y +LI  YC     E+++      L +  E 
Sbjct: 440 EHCKQGHITYALDLFNRMAENGCHPDIHTYTTLIARYCQQRQMEESQKLFDKCLAI--EL 497

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           V           P   +Y S+I   CK      A  +F  M   G   D + Y +LI G 
Sbjct: 498 V-----------PTKQTYTSMIAGYCKVGKSTSALRVFERMVQNGCQADSITYGALISGL 546

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           C   R+++AR L+  +  +  +P   +  TL   Y + EK   A+S+
Sbjct: 547 CKESRLEEARALYEGMLDKRLVPCEVTPVTLAFEYCRREKAVVAVSI 593



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 113/252 (44%), Gaps = 33/252 (13%)

Query: 298 AKELFLDMKSRG-IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           A+++F  M +RG ++PD   + +LI G C  GR+++   L   ++ +G   D ++   ++
Sbjct: 168 ARKVFDGMVTRGGLLPDARSFRALIVGCCRDGRMEEVDALLTVMQGQGFCLDNATCTVIV 227

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRP---------DNSC----ILEAAELFRTLHNTKFE 403
             + +  +  +   L+  M+ MG  P         D  C    + +A  +   +     +
Sbjct: 228 RVFCQKGRFRDVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLK 287

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP-EPNVVTYTVMICGLCIEGGIEKAYD 462
            ++     L++GLCK      A+ LF KL +    +PNV TYTVMI G C EG + +A  
Sbjct: 288 PNVYTHTSLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEM 347

Query: 463 LLPDMEEK-------------IRECLK-----AIELLHKMAKRYVKPDEITVSILEELLN 504
           LL  M E+                C +     A EL++KM +   +P+  T + L + L 
Sbjct: 348 LLGRMVEQGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLC 407

Query: 505 KDENCHECMNLL 516
           K     E   +L
Sbjct: 408 KKGKIQEAYKVL 419



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 78/190 (41%), Gaps = 14/190 (7%)

Query: 57  LSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           ++E+ K G +    AL  FN M      P + ++ +L+     ++       L ++   I
Sbjct: 438 ITEHCKQGHITY--ALDLFNRMAENGCHPDIHTYTTLIARYCQQRQMEESQKLFDKCLAI 495

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
            L+P   +   ++  +CK+   + A     R+++     D +T G LI GLC + +  EA
Sbjct: 496 ELVPTKQTYTSMIAGYCKVGKSTSALRVFERMVQNGCQADSITYGALISGLCKESRLEEA 555

Query: 177 SGLFTKFVAFDCRP-NVIPNVICY-----------ASIIDGLCKDGFVNKVRVLFLDMKG 224
             L+   +     P  V P  + +            SI+D L K    + V VL   +  
Sbjct: 556 RALYEGMLDKRLVPCEVTPVTLAFEYCRREKAVVAVSILDRLDKRRKNHTVNVLVRKLSA 615

Query: 225 RGIYPDAFVY 234
            G   DA ++
Sbjct: 616 IGHVEDASLF 625


>gi|115486223|ref|NP_001068255.1| Os11g0607100 [Oryza sativa Japonica Group]
 gi|77551887|gb|ABA94684.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645477|dbj|BAF28618.1| Os11g0607100 [Oryza sativa Japonica Group]
          Length = 671

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/432 (24%), Positives = 183/432 (42%), Gaps = 46/432 (10%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +   G+ PD  S   L+   C+   V +    L  + R  FS D  T   ++R LC +G+
Sbjct: 172 MTRAGVCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGR 231

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
           F + S  F + +         PNV+ Y + IDGLCK  +V +   +  +M GRG+ P+ +
Sbjct: 232 FKDVSEFFRRML----ETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVY 287

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            + +LI    C + W      T  A  L  + +  +        P+V +Y  +I   C++
Sbjct: 288 THTTLIDGL-CKIGW------TERAFRLFLKLIKSSSY-----KPNVHTYTVMIGGYCRE 335

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             + +A+ L + M  +G+ P+   Y++LI G+C  G  D A +L   ++ EG +P+  +Y
Sbjct: 336 GKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTY 395

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHN 399
           N +I+ + K  K++EA  +     S G++ D                I  A +LF  +  
Sbjct: 396 NAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVE 455

Query: 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEK 459
                D+  +  L+   C+  ++  + + F K    G  P   TYT MI G C       
Sbjct: 456 NGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYC------- 508

Query: 460 AYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519
                     K+     A+ +  +M +     D IT   L   L K+    E   L    
Sbjct: 509 ----------KVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAKALYEGM 558

Query: 520 LSRNQEESKLTR 531
           L +     ++TR
Sbjct: 559 LDKRLVPCEVTR 570



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 185/402 (46%), Gaps = 43/402 (10%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
            R+   G  P+ V+    ++  CK   V  AF  L  ++ +   P+V T   LI GLC  
Sbjct: 240 RRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKI 299

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G    A  LF K +      +  PNV  Y  +I G C++G + +  +L + M  +G+ P+
Sbjct: 300 GWTERAFRLFLKLIK---SSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPN 356

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
              Y +LI  +C         G+   A EL    +N   + G +  P++ +Y ++I+  C
Sbjct: 357 TNTYTTLIGGHC-------KGGSFDRAFEL----MNKMKQEGFL--PNIYTYNAVIDGFC 403

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K   + +A ++     S+G+  D + Y+ LI  +C  G I  A  LF  +   GC PD  
Sbjct: 404 KKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIE 463

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFN 410
           +Y +LI++Y +  ++EE+   + + + +G+ P                          + 
Sbjct: 464 AYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQ----------------------TYT 501

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM-EE 469
            ++ G CK  R   A  +F+++ + G   + +TY  +I GLC E  +E+A  L   M ++
Sbjct: 502 SMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAKALYEGMLDK 561

Query: 470 KIREC-LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCH 510
           ++  C +  + L  +  +R  +   I VS+L+  L+K +  H
Sbjct: 562 RLVPCEVTRVTLTFEYCRR--EKTSIAVSVLDR-LDKRQQVH 600



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 155/345 (44%), Gaps = 39/345 (11%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
              D   FF  M+     P + ++ + +  L  ++Y      + E +   GL P+  +  
Sbjct: 231 RFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHT 290

Query: 127 ILMNCFCKMIGVSDAFVALGRILR-KVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
            L++  CK+     AF    ++++   + P+V T   +I G C +GK   A  L  + V 
Sbjct: 291 TLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMV- 349

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
                 + PN   Y ++I G CK G  ++   L   MK  G  P+ + YN++I  +C   
Sbjct: 350 ---EQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKG 406

Query: 246 NWEDA----------------------------KGNTSAALELHEEFVNGNGELGVICHP 277
             ++A                            +G+ + AL+L +  V  NG     C P
Sbjct: 407 KIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVE-NG-----CCP 460

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           D+ +Y S+I++ C+   ++++++ F      G++P    Y+S+I GYC +GR   A ++F
Sbjct: 461 DIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVF 520

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
             +   GC  D+ +Y  LI+   K  ++EEA +LY  M+   + P
Sbjct: 521 ERMVQNGCFADSITYGALISGLCKESRLEEAKALYEGMLDKRLVP 565



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 120/287 (41%), Gaps = 17/287 (5%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + ++  ++G    +        L  R+   GL P+  +   L+   CK      AF  
Sbjct: 320 PNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFEL 379

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           + ++ ++ F P++ T   +I G C +GK  EA     K +       +  + I Y  +I 
Sbjct: 380 MNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAY----KVLRMATSQGLKFDKITYTILIT 435

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
             CK G +     LF  M   G  PD   Y SLI  YC     E++           ++F
Sbjct: 436 EHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEES-----------QKF 484

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
            +    +G++  P   +Y S+I   CK      A  +F  M   G   D + Y +LI G 
Sbjct: 485 FDKCLMIGLL--PTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGL 542

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           C   R+++A+ L+  +  +  +P   +  TL   Y + EK   A+S+
Sbjct: 543 CKESRLEEAKALYEGMLDKRLVPCEVTRVTLTFEYCRREKTSIAVSV 589



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 112/261 (42%), Gaps = 17/261 (6%)

Query: 65  EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
           E +L  A      M+     P   ++ +L+G       +     L  ++   G LP+  +
Sbjct: 335 EGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYT 394

Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
            N +++ FCK   + +A+  L     +    D +T   LI   C QG  T A  LF + V
Sbjct: 395 YNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMV 454

Query: 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244
              C     P++  Y S+I   C+   + + +  F      G+ P    Y S+I  YC  
Sbjct: 455 ENGC----CPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYC-- 508

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
                  G ++ AL + E  V  NG     C  D ++Y ++I+ LCK+  +++AK L+  
Sbjct: 509 -----KVGRSTLALRVFERMVQ-NG-----CFADSITYGALISGLCKESRLEEAKALYEG 557

Query: 305 MKSRGIIPDVVVYSSLIDGYC 325
           M  + ++P  V   +L   YC
Sbjct: 558 MLDKRLVPCEVTRVTLTFEYC 578



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 104/240 (43%), Gaps = 16/240 (6%)

Query: 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304
            NW    G  + +     +  +G    GV   PD  S+ +++   C++  V++   L   
Sbjct: 149 ANWVLRVGLETGSFVYARKVFDGMTRAGVC--PDERSFRALVVVCCREGKVEEVDALLAA 206

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M   G   D    + ++   C  GR  D  + F  +   G  P+  +Y   I+   K   
Sbjct: 207 MWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRY 266

Query: 365 VEEALSLYGEMISMGVRP---------DNSCILEAAE-----LFRTLHNTKFELDLTVFN 410
           V++A  +  EM+  G++P         D  C +   E       + + ++ ++ ++  + 
Sbjct: 267 VKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYT 326

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            ++ G C+  +L  A  L  ++   G +PN  TYT +I G C  G  ++A++L+  M+++
Sbjct: 327 VMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQE 386



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 91/231 (39%), Gaps = 43/231 (18%)

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           L+R+Y  A     A+G+   A E+    V   GE G +                      
Sbjct: 90  LMRLYVTAATAFVARGSLPMAHEVMRGMVAAFGEAGRL---------------------P 128

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A ++ L+M+S G+   V   + ++      G    ARK+F  +   G  PD  S+  L+
Sbjct: 129 EAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVCPDERSFRALV 188

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416
               +  KVEE  +L   M   G                      F LD      +V  L
Sbjct: 189 VVCCREGKVEEVDALLAAMWRYG----------------------FSLDNATCTVVVRSL 226

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           C+  R +   E F+++   G  PNVV YT  I GLC    +++A+ +L +M
Sbjct: 227 CEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEM 277



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 2/124 (1%)

Query: 57  LSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           ++E+ K G +    AL  F+ M+     P + ++ SL+     ++         ++   I
Sbjct: 434 ITEHCKQGHITY--ALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMI 491

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GLLP   +   ++  +CK+   + A     R+++     D +T G LI GLC + +  EA
Sbjct: 492 GLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEA 551

Query: 177 SGLF 180
             L+
Sbjct: 552 KALY 555


>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
 gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
          Length = 543

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 112/407 (27%), Positives = 178/407 (43%), Gaps = 43/407 (10%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           KSG V+  DA    + M           +NSLL     +K       L E +   G+   
Sbjct: 144 KSGRVD--DARALLDEMPRHGVRLNALCYNSLLDCYVRRKDDARVQELLEIMENGGIEAT 201

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             +  IL++       +S     +  +  K  + DV     +I   C  G    AS +F 
Sbjct: 202 VGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGNVRRASEVFD 261

Query: 182 KFVAFDCRPNVI-PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
                +C  N I PN   Y  +I+G CK G +    +L  DM+GRG+  +  ++N++I  
Sbjct: 262 -----ECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMIDG 316

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
           YC        +G    AL++         EL      DV +Y ++   LC+   + +AK 
Sbjct: 317 YC-------RQGMVDNALKVKAAMEKMGIEL------DVYTYNTLACGLCRVNRMAEAKT 363

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           L   M  +G+ P+ V Y++LI  +C  G + +AR+LF  +  +G +P   +YN +++ Y 
Sbjct: 364 LLHIMIEKGVPPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYI 423

Query: 361 KIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           K   + EA     EM   G+ PD                      +  +  LV G C + 
Sbjct: 424 KKGSIREAERFRKEMEKKGLVPD----------------------VYTYASLVHGHCVNG 461

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           ++  A +LF+++   G EPNVV YT +I GL  EG  E+A+ L  DM
Sbjct: 462 KVDVALKLFEEMKHRGTEPNVVAYTALISGLAKEGRSEEAFQLYDDM 508



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 145/292 (49%), Gaps = 26/292 (8%)

Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
            V  Y  ++D L   G ++KV  +  +MK + +  D ++Y ++I  YC A       GN 
Sbjct: 201 TVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRA-------GNV 253

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
             A E+ +E V GNG       P+  +Y  +IN  CK   ++ A+ L  DM+ RG+  + 
Sbjct: 254 RRASEVFDECV-GNG-----IEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQ 307

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           ++++++IDGYC  G +D+A K+  ++E  G   D  +YNTL     ++ ++ EA +L   
Sbjct: 308 IIFNTMIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHI 367

Query: 375 MISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR 421
           MI  GV P+                ++EA  LFR +        +  +N ++DG  K   
Sbjct: 368 MIEKGVPPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGS 427

Query: 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
           +R A    K++ + G  P+V TY  ++ G C+ G ++ A  L  +M+ +  E
Sbjct: 428 IREAERFRKEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTE 479



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 134/269 (49%), Gaps = 17/269 (6%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ P+  +  +L+N FCK+  +  A + L  +  +    + +    +I G C QG    A
Sbjct: 267 GIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMIDGYCRQGMVDNA 326

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
                K  A   +  +  +V  Y ++  GLC+   + + + L   M  +G+ P+   Y +
Sbjct: 327 ----LKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTT 382

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI ++C        +G+   A  L  E   G G +     P V++Y  +++   K   + 
Sbjct: 383 LISIHC-------KEGDMVEARRLFREMA-GKGAM-----PSVVTYNVMMDGYIKKGSIR 429

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A+    +M+ +G++PDV  Y+SL+ G+C+ G++D A KLF  ++  G  P+  +Y  LI
Sbjct: 430 EAERFRKEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALI 489

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNS 385
           +  +K  + EEA  LY +M+  G+ PD+S
Sbjct: 490 SGLAKEGRSEEAFQLYDDMLKAGLTPDDS 518



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 100/405 (24%), Positives = 169/405 (41%), Gaps = 60/405 (14%)

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G+  +A+ + T+ +   C  +V P  +  + ++DG CK G V+  R L  +M   G+  +
Sbjct: 110 GQLADAAAILTRALG-SCPGSVSP--LAASVVVDGFCKSGRVDDARALLDEMPRHGVRLN 166

Query: 231 AFVYNSLIRVYCCAVNWEDAK----------GNTSAALELHEEFVNGNGELGVICH---- 276
           A  YNSL+   C     +DA+          G   A +  +   V+     G I      
Sbjct: 167 ALCYNSLLD--CYVRRKDDARVQELLEIMENGGIEATVGTYTILVDSLSTAGDISKVEAV 224

Query: 277 ----------PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
                      DV  Y ++IN+ C+   V +A E+F +    GI P+   Y  LI+G+C 
Sbjct: 225 VDEMKAKNVAGDVYLYTAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGVLINGFCK 284

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN-- 384
           +G+++ A  L   ++  G   +   +NT+I+ Y +   V+ AL +   M  MG+  D   
Sbjct: 285 IGQMEAAEMLLADMQGRGVGHNQIIFNTMIDGYCRQGMVDNALKVKAAMEKMGIELDVYT 344

Query: 385 ----SCIL-------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
               +C L       EA  L   +       +   +  L+   CK   +  A  LF+++ 
Sbjct: 345 YNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTTLISIHCKEGDMVEARRLFREMA 404

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-------------IRECLK---- 476
             G  P+VVTY VM+ G   +G I +A     +ME+K                C+     
Sbjct: 405 GKGAMPSVVTYNVMMDGYIKKGSIREAERFRKEMEKKGLVPDVYTYASLVHGHCVNGKVD 464

Query: 477 -AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
            A++L  +M  R  +P+ +  + L   L K+    E   L    L
Sbjct: 465 VALKLFEEMKHRGTEPNVVAYTALISGLAKEGRSEEAFQLYDDML 509



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 116/242 (47%), Gaps = 17/242 (7%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+  + +  N +++ +C+   V +A      + +     DV T   L  GLC   +  EA
Sbjct: 302 GVGHNQIIFNTMIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEA 361

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L    +       V PN + Y ++I   CK+G + + R LF +M G+G  P    YN 
Sbjct: 362 KTLLHIMI----EKGVPPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNV 417

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           ++  Y         KG+   A    E F     + G++  PDV +Y S+++  C +  VD
Sbjct: 418 MMDGYI-------KKGSIREA----ERFRKEMEKKGLV--PDVYTYASLVHGHCVNGKVD 464

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A +LF +MK RG  P+VV Y++LI G    GR ++A +L+  +   G  PD S Y+ L+
Sbjct: 465 VALKLFEEMKHRGTEPNVVAYTALISGLAKEGRSEEAFQLYDDMLKAGLTPDDSLYSALV 524

Query: 357 NS 358
            S
Sbjct: 525 GS 526


>gi|218184813|gb|EEC67240.1| hypothetical protein OsI_34171 [Oryza sativa Indica Group]
          Length = 458

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 177/392 (45%), Gaps = 38/392 (9%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIG---LLPDFVSLNILMNCFCKMIGVSDAFVAL 145
           SFN  L  +A +      + L  R+   G   + PD  + +IL+ C C+   +   F AL
Sbjct: 60  SFNRTLTDVA-RDSPAAAVSLFNRMARAGADEVTPDLCTYSILIGCCCRAGRLDLGFAAL 118

Query: 146 GRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL-FTKFVAFDCRPNVIPNVICYASIID 204
           G +++K F  + +T   L++GLC   + ++A  +   +     C P+V    I    ++ 
Sbjct: 119 GNVIKKGFRVEAITFAPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTI----LLK 174

Query: 205 GLCKDGFVNKVRVLF---LDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261
           GLC +    +   L     D +G G  PD   Y ++I       N    +G++  A   +
Sbjct: 175 GLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVI-------NGFFKEGDSDKAYSTY 227

Query: 262 EEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
            E       LG    P+V++Y SII +LCK   +DKA E+   M   G++PD + YSS++
Sbjct: 228 HEM------LGRRISPNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYSSIL 281

Query: 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381
            GYC  G+  +       + S+G  P+  +Y +L+N   K  +  +A  ++  M   G+ 
Sbjct: 282 HGYCSSGQPKEDIGTLNKMRSDGVEPNVVTYRSLMNYLCKNGRCTKARKIFDSMTKRGLE 341

Query: 382 PD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
           PD                ++E   L   +     + D  VFN L+    K  ++  A  +
Sbjct: 342 PDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLV 401

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
           F K+ ++G  PNVV Y  +I  LC  G ++ A
Sbjct: 402 FSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDA 433



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 131/311 (42%), Gaps = 54/311 (17%)

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
           V P++  Y+ +I   C+ G ++       ++  +G   +A  +  L++  C       A 
Sbjct: 91  VTPDLCTYSILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFAPLLKGLC-------AD 143

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF---LDMKSR 308
             TS A+++    +    EL   C PDV S   ++  LC +    +A EL     D +  
Sbjct: 144 KRTSDAMDIVLRRMT---ELS--CMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGG 198

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
           G  PDVV Y+++I+G+   G  D A   +  +      P+  +Y+++I +  K + +++A
Sbjct: 199 GSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLGRRISPNVVTYSSIIAALCKAQAMDKA 258

Query: 369 LSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428
           + +   M+  GV PD  C+                     ++ ++ G C S + +     
Sbjct: 259 MEVLNTMVKNGVMPD--CM--------------------TYSSILHGYCSSGQPKEDIGT 296

Query: 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRY 488
             K+   G EPNVVTY  ++  LC  G                  C KA ++   M KR 
Sbjct: 297 LNKMRSDGVEPNVVTYRSLMNYLCKNG-----------------RCTKARKIFDSMTKRG 339

Query: 489 VKPDEITVSIL 499
           ++PD  T   L
Sbjct: 340 LEPDIATYRTL 350



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 101/234 (43%), Gaps = 46/234 (19%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ V+ + ++   CK   +  A   L  +++    PD +T   ++ G C  G+  E  G 
Sbjct: 237 PNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYSSILHGYCSSGQPKEDIGT 296

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             K  +      V PNV+ Y S+++ LCK+G   K R +F  M  RG+ PD   Y +L++
Sbjct: 297 LNKMRS----DGVEPNVVTYRSLMNYLCKNGRCTKARKIFDSMTKRGLEPDIATYRTLLQ 352

Query: 240 VYCCAVNWEDAKGNTSAALELHE--EFVNGNGELG-------VIC--------------- 275
            Y         KG   A +E+H   + +  NG          +IC               
Sbjct: 353 GYA-------TKG---ALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVF 402

Query: 276 --------HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321
                   +P+V+ Y ++I+ LCK   VD A   F  M   G+ P++++  S +
Sbjct: 403 SKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIILSVSSV 456



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 109/280 (38%), Gaps = 41/280 (14%)

Query: 287 NSLCKDVLVDK---AKELFLDMKSRG---IIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
           N    DV  D    A  LF  M   G   + PD+  YS LI   C  GR+D       ++
Sbjct: 62  NRTLTDVARDSPAAAVSLFNRMARAGADEVTPDLCTYSILIGCCCRAGRLDLGFAALGNV 121

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLY-GEMISMGVRPDN-SCIL---------- 388
             +G   +  ++  L+      ++  +A+ +    M  +   PD  SC +          
Sbjct: 122 IKKGFRVEAITFAPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENR 181

Query: 389 --EAAELFRTLHNTK---FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
             EA EL   + + +      D+  +  +++G  K      A+  + ++      PNVVT
Sbjct: 182 SQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLGRRISPNVVT 241

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEK--IRECLKAIELLH----------------KMA 485
           Y+ +I  LC    ++KA ++L  M +   + +C+    +LH                KM 
Sbjct: 242 YSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYSSILHGYCSSGQPKEDIGTLNKMR 301

Query: 486 KRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQE 525
              V+P+ +T   L   L K+  C +   +  S   R  E
Sbjct: 302 SDGVEPNVVTYRSLMNYLCKNGRCTKARKIFDSMTKRGLE 341



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 5/144 (3%)

Query: 53  LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSER 112
           L+ YL +N +        A   F+ M      P + ++ +LL   A K   V    L + 
Sbjct: 315 LMNYLCKNGRC-----TKARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDL 369

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           +   G+ PD    NIL+  + K   V  A +   ++ +   +P+VV  G +I  LC  G 
Sbjct: 370 MVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGS 429

Query: 173 FTEASGLFTKFVAFDCRPNVIPNV 196
             +A   F + +     PN+I +V
Sbjct: 430 VDDAMLYFEQMIDEGLTPNIILSV 453


>gi|242052075|ref|XP_002455183.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
 gi|241927158|gb|EES00303.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
          Length = 892

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/419 (24%), Positives = 190/419 (45%), Gaps = 47/419 (11%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           +++ + ++  +P   S + +++   K   +  AF     +      P++     LI  LC
Sbjct: 287 MTDDMLSLHFVPSVASCSFMVDGLRKRGHIDKAFRLACHLGELGMVPNLFACNALIDKLC 346

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
              +F EA  LF           + PN + YA +I  LCK G ++    +F  M+ +GI 
Sbjct: 347 KDRRFREAERLFRGMA----NRGLEPNEVTYAILIHSLCKRGMMDDALCMFDRMREKGIR 402

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
              + YNSLI  YC   N+  A+G            +N   E G+   P   SY  +I  
Sbjct: 403 VTVYPYNSLINGYCQHDNFHQARG-----------LLNEMVEKGLA--PSAASYSPLIAG 449

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           LC+   +  A EL  +M   G+  +V  +++LI G+C  G +D+A +LF  +     +P+
Sbjct: 450 LCRKGDLASAMELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPN 509

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS---------CI----LEAAELFR 395
             ++N +I  Y ++  V +A  LY +M+  G+ PDN          C+    ++A E   
Sbjct: 510 EVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGLTPDNYTYRSLISVLCLTLGAMKAKEFVD 569

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            L N    L+      L+ G CK  RL   + ++ ++   G + +++++TV++       
Sbjct: 570 DLENNCVVLNSFSLTTLMYGFCKEGRLTETYHIWDEMRARGVKLDLISFTVIV------- 622

Query: 456 GIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMN 514
                Y  L     K+ +  K   L  +M ++ VKPD +  + + ++ +K+EN  + +N
Sbjct: 623 -----YAAL-----KLHDGEKISVLFREMKEKGVKPDNVFHTCMIDVHSKEENIVQALN 671



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 117/466 (25%), Positives = 206/466 (44%), Gaps = 55/466 (11%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           ++DALC F+ M        +  +NSL+        +     L   +   GL P   S + 
Sbjct: 386 MDDALCMFDRMREKGIRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSP 445

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+   C+   ++ A      + R   S +V T   LI G C  G   EA+ LF K +   
Sbjct: 446 LIAGLCRKGDLASAMELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMID-- 503

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
              +V+PN + +  +I+G C+ G V K   L+  M  RG+ PD + Y SLI V C  +  
Sbjct: 504 --SSVVPNEVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGLTPDNYTYRSLISVLCLTLGA 561

Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
             AK           EFV+      V+ +    S  +++   CK+  + +   ++ +M++
Sbjct: 562 MKAK-----------EFVDDLENNCVVLNS--FSLTTLMYGFCKEGRLTETYHIWDEMRA 608

Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARK---LFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           RG+  D++ ++ ++  Y  + ++ D  K   LF  ++ +G  PD   +  +I+ +SK E 
Sbjct: 609 RGVKLDLISFTVIV--YAAL-KLHDGEKISVLFREMKEKGVKPDNVFHTCMIDVHSKEEN 665

Query: 365 VEEALSLYGEMISMGVRPD------------NSCILEAAELF-RTLHNTKFELDLTVFNC 411
           + +AL+ + +MI+ G  P+             S  L +A++    +   +F  +   +NC
Sbjct: 666 IVQALNCWDKMIADGCSPNVVTYTVLINHLCKSGYLSSAQILCEEMLVGRFLPNSFTYNC 725

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE-- 469
            +D L     L  A  L   +   G   N VT+  +I G C  G I+ A DL+ +  E  
Sbjct: 726 FLDFLANEGELEKAKVLHATILE-GCLANTVTFNTLIKGFCKAGQIQGAIDLMQNNTESG 784

Query: 470 ----------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                           K+ +  KA +L ++M  + +KPD +  +IL
Sbjct: 785 FFPDCISYSTIINELCKVGDINKAFQLWNEMLYKGLKPDIVAYNIL 830



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 169/373 (45%), Gaps = 30/373 (8%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           L  R+ + G+    V  N+LM   C+   V +A      ++ +    D VT   L+ G C
Sbjct: 217 LLTRMESKGVKGSAVPYNVLMYGLCRNNRVLEAVEVKNSMVERGIVADEVTYRTLVYGFC 276

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
              +   A  +    ++     + +P+V   + ++DGL K G ++K   L   +   G+ 
Sbjct: 277 RTEELEMALEMTDDMLSL----HFVPSVASCSFMVDGLRKRGHIDKAFRLACHLGELGMV 332

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           P+ F  N+LI   C    + +A           E    G    G+   P+ ++Y  +I+S
Sbjct: 333 PNLFACNALIDKLCKDRRFREA-----------ERLFRGMANRGL--EPNEVTYAILIHS 379

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           LCK  ++D A  +F  M+ +GI   V  Y+SLI+GYC       AR L   +  +G  P 
Sbjct: 380 LCKRGMMDDALCMFDRMREKGIRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPS 439

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFR 395
            +SY+ LI    +   +  A+ L+ EM   GV  +             +  + EAA LF 
Sbjct: 440 AASYSPLIAGLCRKGDLASAMELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFD 499

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            + ++    +   FN +++G C+   +R A++L+ ++   G  P+  TY  +I  LC+  
Sbjct: 500 KMIDSSVVPNEVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGLTPDNYTYRSLISVLCLTL 559

Query: 456 GIEKAYDLLPDME 468
           G  KA + + D+E
Sbjct: 560 GAMKAKEFVDDLE 572



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 98/343 (28%), Positives = 148/343 (43%), Gaps = 41/343 (11%)

Query: 164 IRGLCMQGKFTEASGLFTKFVAFDCRPNVIP-NVICYASIIDGLCKDGFVNKVRVLFLDM 222
           IR  C       A GL T+  +   + + +P NV+ Y     GLC++  V +   +   M
Sbjct: 202 IRAYCEIRNLDGARGLLTRMESKGVKGSAVPYNVLMY-----GLCRNNRVLEAVEVKNSM 256

Query: 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELH--------EEFVNGNGELGVI 274
             RGI  D   Y +L+  +C     E A   T   L LH           V+G  + G I
Sbjct: 257 VERGIVADEVTYRTLVYGFCRTEELEMALEMTDDMLSLHFVPSVASCSFMVDGLRKRGHI 316

Query: 275 -------CH-------PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320
                  CH       P++ +  ++I+ LCKD    +A+ LF  M +RG+ P+ V Y+ L
Sbjct: 317 DKAFRLACHLGELGMVPNLFACNALIDKLCKDRRFREAERLFRGMANRGLEPNEVTYAIL 376

Query: 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           I   C  G +DDA  +F  +  +G       YN+LIN Y + +   +A  L  EM+  G+
Sbjct: 377 IHSLCKRGMMDDALCMFDRMREKGIRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGL 436

Query: 381 RPDNSC-------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
            P  +              +  A EL R +       ++  F  L+ G CK   +  A  
Sbjct: 437 APSAASYSPLIAGLCRKGDLASAMELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAAR 496

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           LF K+      PN VT+ VMI G C  G + KA+ L   M ++
Sbjct: 497 LFDKMIDSSVVPNEVTFNVMIEGYCRVGNVRKAFQLYDQMVDR 539



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 105/409 (25%), Positives = 176/409 (43%), Gaps = 33/409 (8%)

Query: 75  FNYMIHMQPTPFMPSF---NSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131
           F    H+     +P+    N+L+  L   + +     L   +   GL P+ V+  IL++ 
Sbjct: 320 FRLACHLGELGMVPNLFACNALIDKLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHS 379

Query: 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN 191
            CK   + DA     R+  K     V     LI G C    F +A GL  + V       
Sbjct: 380 LCKRGMMDDALCMFDRMREKGIRVTVYPYNSLINGYCQHDNFHQARGLLNEMV----EKG 435

Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
           + P+   Y+ +I GLC+ G +     L  +M   G+  + + + +LI  +C         
Sbjct: 436 LAPSAASYSPLIAGLCRKGDLASAMELHREMARNGVSGNVYTFTTLISGFC-------KD 488

Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII 311
           GN   A  L ++ ++ +    V+  P+ +++  +I   C+   V KA +L+  M  RG+ 
Sbjct: 489 GNMDEAARLFDKMIDSS----VV--PNEVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGLT 542

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371
           PD   Y SLI   CL      A++    +E+   + ++ S  TL+  + K  ++ E   +
Sbjct: 543 PDNYTYRSLISVLCLTLGAMKAKEFVDDLENNCVVLNSFSLTTLMYGFCKEGRLTETYHI 602

Query: 372 YGEMISMGVRPD---NSCILEAA----------ELFRTLHNTKFELDLTVFNCLVDGLCK 418
           + EM + GV+ D    + I+ AA           LFR +     + D     C++D   K
Sbjct: 603 WDEMRARGVKLDLISFTVIVYAALKLHDGEKISVLFREMKEKGVKPDNVFHTCMIDVHSK 662

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
              +  A   + K+   G  PNVVTYTV+I  LC  G +  A  L  +M
Sbjct: 663 EENIVQALNCWDKMIADGCSPNVVTYTVLINHLCKSGYLSSAQILCEEM 711



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 176/401 (43%), Gaps = 42/401 (10%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           +++A   F+ MI     P   +FN ++              L +++   GL PD  +   
Sbjct: 491 MDEAARLFDKMIDSSVVPNEVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGLTPDNYTYRS 550

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L++  C  +G   A   +  +       +  +L  L+ G C +G+ TE   ++ +  A  
Sbjct: 551 LISVLCLTLGAMKAKEFVDDLENNCVVLNSFSLTTLMYGFCKEGRLTETYHIWDEMRARG 610

Query: 188 CRPNVIP-NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            + ++I   VI YA++      DG   K+ VLF +MK +G+ PD   +        C ++
Sbjct: 611 VKLDLISFTVIVYAALK---LHDG--EKISVLFREMKEKGVKPDNVFHT-------CMID 658

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
               + N   AL   ++ +         C P+V++Y  +IN LCK   +  A+ L  +M 
Sbjct: 659 VHSKEENIVQALNCWDKMIADG------CSPNVVTYTVLINHLCKSGYLSSAQILCEEML 712

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
               +P+   Y+  +D     G ++ A+ L  +I  EGC+ +T ++NTLI  + K  +++
Sbjct: 713 VGRFLPNSFTYNCFLDFLANEGELEKAKVLHATI-LEGCLANTVTFNTLIKGFCKAGQIQ 771

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
            A+ L       G  PD  CI                     ++ +++ LCK   +  A+
Sbjct: 772 GAIDLMQNNTESGFFPD--CI--------------------SYSTIINELCKVGDINKAF 809

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +L+ ++   G +P++V Y ++I    I G  +K   +  DM
Sbjct: 810 QLWNEMLYKGLKPDIVAYNILIRWCNIHGEFDKGLGIYSDM 850



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 100/206 (48%), Gaps = 13/206 (6%)

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           D   Y + I + C+   +D A+ L   M+S+G+    V Y+ L+ G C   R+ +A ++ 
Sbjct: 194 DEYVYTAGIRAYCEIRNLDGARGLLTRMESKGVKGSAVPYNVLMYGLCRNNRVLEAVEVK 253

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-NSCILEAAELFRT 396
            S+   G + D  +Y TL+  + + E++E AL +  +M+S+   P   SC      L + 
Sbjct: 254 NSMVERGIVADEVTYRTLVYGFCRTEELEMALEMTDDMLSLHFVPSVASCSFMVDGLRKR 313

Query: 397 LHNTK-FEL-----------DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
            H  K F L           +L   N L+D LCK  R R A  LF+ +   G EPN VTY
Sbjct: 314 GHIDKAFRLACHLGELGMVPNLFACNALIDKLCKDRRFREAERLFRGMANRGLEPNEVTY 373

Query: 445 TVMICGLCIEGGIEKAYDLLPDMEEK 470
            ++I  LC  G ++ A  +   M EK
Sbjct: 374 AILIHSLCKRGMMDDALCMFDRMREK 399



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 123/273 (45%), Gaps = 18/273 (6%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           + +   G+  D +S  +++    K+       V    +  K   PD V   C+I     +
Sbjct: 604 DEMRARGVKLDLISFTVIVYAALKLHDGEKISVLFREMKEKGVKPDNVFHTCMIDVHSKE 663

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
               +A   + K +A  C PNV+     Y  +I+ LCK G+++  ++L  +M      P+
Sbjct: 664 ENIVQALNCWDKMIADGCSPNVVT----YTVLINHLCKSGYLSSAQILCEEMLVGRFLPN 719

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
           +F YN       C +++   +G    A  LH   + G       C  + +++ ++I   C
Sbjct: 720 SFTYN-------CFLDFLANEGELEKAKVLHATILEG-------CLANTVTFNTLIKGFC 765

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           K   +  A +L  +    G  PD + YS++I+  C +G I+ A +L+  +  +G  PD  
Sbjct: 766 KAGQIQGAIDLMQNNTESGFFPDCISYSTIINELCKVGDINKAFQLWNEMLYKGLKPDIV 825

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           +YN LI   +   + ++ L +Y +M+++    D
Sbjct: 826 AYNILIRWCNIHGEFDKGLGIYSDMVNLKYADD 858



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 45/96 (46%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           +FN+L+            I L +     G  PD +S + ++N  CK+  ++ AF     +
Sbjct: 756 TFNTLIKGFCKAGQIQGAIDLMQNNTESGFFPDCISYSTIINELCKVGDINKAFQLWNEM 815

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
           L K   PD+V    LIR   + G+F +  G+++  V
Sbjct: 816 LYKGLKPDIVAYNILIRWCNIHGEFDKGLGIYSDMV 851



 Score = 39.7 bits (91), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 17/110 (15%)

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
           A +LF  +   KF LD  V+   +   C+   L  A  L  ++   G + + V Y V++ 
Sbjct: 179 ARDLFDEMVQCKFPLDEYVYTAGIRAYCEIRNLDGARGLLTRMESKGVKGSAVPYNVLMY 238

Query: 450 GLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           GLC                 +    L+A+E+ + M +R +  DE+T   L
Sbjct: 239 GLC-----------------RNNRVLEAVEVKNSMVERGIVADEVTYRTL 271


>gi|413920478|gb|AFW60410.1| hypothetical protein ZEAMMB73_296337 [Zea mays]
          Length = 676

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/432 (24%), Positives = 191/432 (44%), Gaps = 45/432 (10%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+ PD  S   L+   C+     +A   L  +  + F  D  T   ++R  C QG+F   
Sbjct: 176 GVRPDHRSFRALVLGCCREGRFEEADALLAAMWAQGFCLDSATCTVVVRAFCRQGRFRNV 235

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
           + LF +           PN++ Y++ IDGLC+ G+V +   +  +M G+G+ P+ + + S
Sbjct: 236 TDLFRRMSEM----GTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTS 291

Query: 237 LIRVYCCAVNWED----------AKGNTSAALELHEEFVNGNGELGVICHPDVL------ 280
           LI    C + W +             +    +  +   + G  + G +   ++L      
Sbjct: 292 LIDGL-CKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVE 350

Query: 281 --------SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
                   +Y ++I+  CK    D+A EL   MK  G +P++  Y+++I G+C  G+I +
Sbjct: 351 QGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQE 410

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS------- 385
           A K+     S+G   D  +Y  LI  + K   +  AL L+ +M      PD         
Sbjct: 411 AYKVLRMATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQMAEKSCHPDIHTYTTIIA 470

Query: 386 --CILEAAELFRTLHNTKFELDLT----VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
             C     E  + L +    + L      +  ++ G C+  +L SA ++F+++ ++G  P
Sbjct: 471 MYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRLGKLTSALKVFERMVQHGCLP 530

Query: 440 NVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSI- 498
           + +TY  +I  LC E  +E+A  L   M +K         +   +A  Y + D+IT+++ 
Sbjct: 531 DSITYGALISSLCKESRLEEARALFETMLDKHLVPCDVTRV--TLAYEYCRRDKITIAVS 588

Query: 499 LEELLNKDENCH 510
             + L+K +  H
Sbjct: 589 FLDRLDKRQQAH 600



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/393 (25%), Positives = 179/393 (45%), Gaps = 47/393 (11%)

Query: 74  FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
            F  M  M   P M ++++ +  L  + Y      + E +   GL P+  +   L++  C
Sbjct: 238 LFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLC 297

Query: 134 KMIGVSDAFVALGRILRKV-FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNV 192
           K+  +  AF    ++++   + P+V T   +I G C +GK   A  L  + V       +
Sbjct: 298 KIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMV----EQGL 353

Query: 193 IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA-- 250
            PN   Y ++I G CK G  ++   L   MK  G  P+ + YN++I  +C     ++A  
Sbjct: 354 APNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQEAYK 413

Query: 251 --------------------------KGNTSAALELHEEFVNGNGELGVICHPDVLSYCS 284
                                     +G+ + AL+L ++    +      CHPD+ +Y +
Sbjct: 414 VLRMATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQMAEKS------CHPDIHTYTT 467

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           II   C+   ++++++LF    S G++P    Y+S+I GYC +G++  A K+F  +   G
Sbjct: 468 IIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRLGKLTSALKVFERMVQHG 527

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP-DNSCILEAAELFRTLHNTKFE 403
           C+PD+ +Y  LI+S  K  ++EEA +L+  M+   + P D + +  A E  R        
Sbjct: 528 CLPDSITYGALISSLCKESRLEEARALFETMLDKHLVPCDVTRVTLAYEYCR-------R 580

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436
             +T+    +D L K  +  +A  L +KL   G
Sbjct: 581 DKITIAVSFLDRLDKRQQAHTADALVRKLSTVG 613



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 97/238 (40%), Gaps = 48/238 (20%)

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           L+R+Y  A     A+GN   A E     V    E G +                      
Sbjct: 87  LMRLYATAATAFVARGNLPMAHEAARAMVAAFAEAGRL---------------------R 125

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLI--DGYCLMGRIDDARKLF--VSIESEGCIPDTSSY 352
           +A ++ L+++S G+ P VV  ++ +   G    G    AR+ F  ++  + G  PD  S+
Sbjct: 126 EAADMLLELRSHGL-PLVVETANWVLRVGLRHPGCFAHAREAFDGMARAAGGVRPDHRSF 184

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCL 412
             L+    +  + EEA +L   M + G                      F LD      +
Sbjct: 185 RALVLGCCREGRFEEADALLAAMWAQG----------------------FCLDSATCTVV 222

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           V   C+  R R+  +LF+++   G  PN+V Y+  I GLC  G +++A+ +L +M  K
Sbjct: 223 VRAFCRQGRFRNVTDLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGK 280



 Score = 45.1 bits (105), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 2/124 (1%)

Query: 57  LSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
           ++E+ K G +    AL  F  M      P + ++ +++     ++       L ++  +I
Sbjct: 434 ITEHCKQGHITC--ALDLFKQMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKCLSI 491

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL+P   +   ++  +C++  ++ A     R+++    PD +T G LI  LC + +  EA
Sbjct: 492 GLVPTKQTYTSMIAGYCRLGKLTSALKVFERMVQHGCLPDSITYGALISSLCKESRLEEA 551

Query: 177 SGLF 180
             LF
Sbjct: 552 RALF 555


>gi|356525427|ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Glycine max]
          Length = 521

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/447 (23%), Positives = 202/447 (45%), Gaps = 53/447 (11%)

Query: 72  LCFFNYMIHMQPTPF--MP-SFNSLLGALAGKKYYVNFICLSERL---NTIGLLPDFVSL 125
           L    Y  H+ P  F  +P +++  + AL      +N   +   L   +++G +PD  + 
Sbjct: 63  LAHHYYRRHVIPRGFSLLPFTYSRFISALCSAPNNINLPLIHSLLLDMDSLGFVPDIWAF 122

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           N  +N  C+   +  A      +  K   PDVV+   +I  LC   +F EA+ ++ + + 
Sbjct: 123 NTYLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKVWRRLID 182

Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
               P+      C A ++ GLC  G V+    L + +   G+  ++ VYN+LI  +C   
Sbjct: 183 KGLSPDYKA---CVALVV-GLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFC--- 235

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
                 G    A+++ + F++  G     C PD+++Y  ++N  C++ +VD+A  L   M
Sbjct: 236 ----RMGRVDKAMKI-KAFMSRTG-----CVPDLVTYNILLNYCCEEGMVDEAVRLVETM 285

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
           +  G+ PD+  Y+ L+ G+C    +D A  + V       + D  SYNT+I ++ K  + 
Sbjct: 286 ERSGVEPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMCDVVSYNTVITAFCKARRT 345

Query: 366 EEALSLYGEMISMGVRPD--------NSCILEAA-----ELFRTLHNTKFELDLTVFNCL 412
            +   L+ EM   G+RPD        ++ + E +     +L   +   +   D   +  +
Sbjct: 346 RKGYELFEEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAV 405

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIR 472
           VD LCK+ ++  A  +F+ +   G  P+V++Y  ++ G C                 K  
Sbjct: 406 VDHLCKNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFC-----------------KTS 448

Query: 473 ECLKAIELLHKMAKRYVKPDEITVSIL 499
             + A+ L  +M  + + PDE+T  ++
Sbjct: 449 RVMDAMHLFDEMQSKGLYPDEVTYKLI 475



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 107/404 (26%), Positives = 181/404 (44%), Gaps = 39/404 (9%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            L  AL  F+ M      P + S+  ++ AL   K +     +  RL   GL PD+ +  
Sbjct: 134 RLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKVWRRLIDKGLSPDYKACV 193

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+   C    V  A+  +  +++     + +    LI G C  G+  +A     K  AF
Sbjct: 194 ALVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGRVDKA----MKIKAF 249

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             R   +P+++ Y  +++  C++G V++   L   M+  G+ PD + YN L++ +C A N
Sbjct: 250 MSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSYNELLKGFCKA-N 308

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
             D      A L + E       +   +C  DV+SY ++I + CK     K  ELF +M 
Sbjct: 309 MVD-----RAHLMMVERM-----QTKGMC--DVVSYNTVITAFCKARRTRKGYELFEEMC 356

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            +GI PD+V ++ LID +   G     +KL   +     +PD   Y  +++   K  KV+
Sbjct: 357 GKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLCKNGKVD 416

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
            A S++ +M+  GV P                      D+  +N L++G CK+ R+  A 
Sbjct: 417 VAHSVFRDMVENGVNP----------------------DVISYNALLNGFCKTSRVMDAM 454

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            LF ++   G  P+ VTY +++ GL     I  A  +   M E+
Sbjct: 455 HLFDEMQSKGLYPDEVTYKLIVGGLIRGKKISLACRVWDQMMER 498



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 135/267 (50%), Gaps = 17/267 (6%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           ++  G +PD V+ NIL+N  C+   V +A   +  + R    PD+ +   L++G C    
Sbjct: 250 MSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSYNELLKGFCKANM 309

Query: 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
              A  +  + +    +   + +V+ Y ++I   CK     K   LF +M G+GI PD  
Sbjct: 310 VDRAHLMMVERM----QTKGMCDVVSYNTVITAFCKARRTRKGYELFEEMCGKGIRPDMV 365

Query: 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
            +N LI  +         +G+T    +L +E      ++ V+  PD + Y ++++ LCK+
Sbjct: 366 TFNILIDAFL-------REGSTHVVKKLLDEMT----KMRVL--PDCIFYTAVVDHLCKN 412

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
             VD A  +F DM   G+ PDV+ Y++L++G+C   R+ DA  LF  ++S+G  PD  +Y
Sbjct: 413 GKVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYPDEVTY 472

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMG 379
             ++    + +K+  A  ++ +M+  G
Sbjct: 473 KLIVGGLIRGKKISLACRVWDQMMERG 499



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 162/370 (43%), Gaps = 46/370 (12%)

Query: 193 IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252
           +P++  + + ++ LC+   +     LF  M  +G  PD   Y  +I   C A  +++A  
Sbjct: 116 VPDIWAFNTYLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAA- 174

Query: 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
                 ++    ++          PD  +  +++  LC    VD A EL + +   G+  
Sbjct: 175 ------KVWRRLIDKG------LSPDYKACVALVVGLCSGGRVDLAYELVVGVIKGGVKV 222

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
           + +VY++LIDG+C MGR+D A K+   +   GC+PD  +YN L+N   +   V+EA+ L 
Sbjct: 223 NSLVYNALIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLV 282

Query: 373 GEMISMGVRPD------------NSCILEAAELFRTLH-NTKFELDLTVFNCLVDGLCKS 419
             M   GV PD             + +++ A L       TK   D+  +N ++   CK+
Sbjct: 283 ETMERSGVEPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMCDVVSYNTVITAFCKA 342

Query: 420 WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIR---ECL- 475
            R R  +ELF+++   G  P++VT+ ++I     EG       LL +M  K+R   +C+ 
Sbjct: 343 RRTRKGYELFEEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEM-TKMRVLPDCIF 401

Query: 476 ---------------KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520
                           A  +   M +  V PD I+ + L     K     + M+L     
Sbjct: 402 YTAVVDHLCKNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQ 461

Query: 521 SRNQEESKLT 530
           S+     ++T
Sbjct: 462 SKGLYPDEVT 471



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 121/275 (44%), Gaps = 17/275 (6%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
            P + ++N LL     +      + L E +   G+ PD  S N L+  FCK   V  A +
Sbjct: 256 VPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSYNELLKGFCKANMVDRAHL 315

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
            +   ++     DVV+   +I   C   +  +   LF +     C   + P+++ +  +I
Sbjct: 316 MMVERMQTKGMCDVVSYNTVITAFCKARRTRKGYELFEEM----CGKGIRPDMVTFNILI 371

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
           D   ++G  + V+ L  +M    + PD   Y +++   C         G    A  +  +
Sbjct: 372 DAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLC-------KNGKVDVAHSVFRD 424

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
            V    E GV  +PDV+SY +++N  CK   V  A  LF +M+S+G+ PD V Y  ++ G
Sbjct: 425 MV----ENGV--NPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYPDEVTYKLIVGG 478

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
                +I  A +++  +   G   +     TL+N+
Sbjct: 479 LIRGKKISLACRVWDQMMERGFTLNRHLSETLVNA 513


>gi|346703736|emb|CBX24404.1| hypothetical_protein [Oryza glaberrima]
          Length = 1765

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 165/387 (42%), Gaps = 33/387 (8%)

Query: 81   MQPTPFMPS---FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG 137
            M+   F+P+   + SL+  L  K        L   +   G  P+    N +++  CK   
Sbjct: 1208 METKGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCKCRS 1267

Query: 138  VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
             + A V L ++      PD++T   LI GLC +G   +A      F+    R  + PN +
Sbjct: 1268 ATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAE----HFLREAIRRELNPNQL 1323

Query: 198  CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
             Y  +I G C  G +     L ++M GRG  PD   + +LI     A       G  S A
Sbjct: 1324 SYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLVVA-------GKVSEA 1376

Query: 258  LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
            L + E+             PDV  Y  +I+ LCK  ++  AK +  +M  + + PD  VY
Sbjct: 1377 LIVREKMTERQ------VFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVY 1430

Query: 318  SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
            ++LIDG+     + DARK+F  +E +G  PD  S N +I  Y +   + EA+     M  
Sbjct: 1431 ATLIDGFIRSENLGDARKIFEFMEHKGICPDIVSCNAMIKGYCQFGMMSEAILCMSNMRK 1490

Query: 378  MGVRPDNSCILEAAELFRTLHNTKFEL-------------DLTVFNCLVDGLCKSWRLRS 424
            +G  PD          +    N    L             ++  ++ L++G CK+     
Sbjct: 1491 VGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDF 1550

Query: 425  AWELFKKLPRYGPEPNVVTYTVMICGL 451
            A  LF  +      PNVVTYT++I  L
Sbjct: 1551 AEGLFANMQAEALSPNVVTYTILIGSL 1577



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 118/479 (24%), Positives = 193/479 (40%), Gaps = 76/479 (15%)

Query: 84   TPFMPSFNSLLGALAGKKYYVNFICLSERLN-TIGLLPDFVSLNILMNCFCKMIGVSDAF 142
             P      +L+ A A          + ER+    G LP+    N L+    +     DA 
Sbjct: 1073 APTRACLGALVAAYADAGMLGKATKMCERVREQYGSLPEVTHCNRLLKLLVEQRRWDDAR 1132

Query: 143  VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI--------- 193
                 +L K    D  +   L+RGLC++ +  E   L        C P+V+         
Sbjct: 1133 KLYDEMLGKDSGADNYSTCVLVRGLCLERRVEEGLKLIEARWGAGCIPHVVFYNVLIDGY 1192

Query: 194  ----------------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
                                  P ++ Y S+I+ L K G + K+  LFL+M+ RG  P+ 
Sbjct: 1193 CRRGDMGRGLLLLGEMETKGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNV 1252

Query: 232  FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
             +YNS+I   C        +  T A + L + F +G       C PD++++ ++I  LC 
Sbjct: 1253 QIYNSVIDALC------KCRSATQAMVILKQMFASG-------CDPDIITFNTLITGLCH 1299

Query: 292  DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
            +  V KA+    +   R + P+ + Y+ LI G+C+ G +  A  L V +   G  PD  +
Sbjct: 1300 EGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVT 1359

Query: 352  YNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------NSCILEAAE-LFRTLH 398
            +  LI+      KV EAL +  +M    V PD               +L AA+ +   + 
Sbjct: 1360 FGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILEEML 1419

Query: 399  NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
                + D  V+  L+DG  +S  L  A ++F+ +   G  P++V+   MI G C  G + 
Sbjct: 1420 EKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGICPDIVSCNAMIKGYCQFGMMS 1479

Query: 459  KAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
            +A   + +M +                  K      A+  L  M KR  KP+ +T S L
Sbjct: 1480 EAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSL 1538



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 112/435 (25%), Positives = 181/435 (41%), Gaps = 55/435 (12%)

Query: 69   NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
              A+     M      P + +FN+L+  L  + +               L P+ +S   L
Sbjct: 1269 TQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPL 1328

Query: 129  MNCFC---KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
            ++ FC   +++  SD  V +   + +  +PDVVT G LI GL + GK +EA  +  K   
Sbjct: 1329 IHGFCMRGELMVASDLLVEM---MGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMT- 1384

Query: 186  FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
                  V P+V  Y  +I GLCK   +   + +  +M  + + PD FVY +LI  +  + 
Sbjct: 1385 ---ERQVFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSE 1441

Query: 246  NWEDAKGNTSAALELHEE------------FVNGNGELGVI--------------CHPDV 279
            N  DA+       E  E              + G  + G++              C PD 
Sbjct: 1442 NLGDAR----KIFEFMEHKGICPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDE 1497

Query: 280  LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
             +Y ++I+   K   ++ A     DM  R   P+VV YSSLI+GYC  G  D A  LF +
Sbjct: 1498 FTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDFAEGLFAN 1557

Query: 340  IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN 399
            +++E   P+  +Y  LI S  K +KV  A   +  M+     P++           TLH 
Sbjct: 1558 MQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDV----------TLHY 1607

Query: 400  TKFELDLTVFNCLVDGLC----KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
                L  +   C+++ +C    +     +   +FKKL     +P    Y  +I  LC   
Sbjct: 1608 LVNGLT-SCTPCVINSICCNTSEVHGKDALLVVFKKLVFDIGDPRNSAYNAIIFSLCRHN 1666

Query: 456  GIEKAYDLLPDMEEK 470
             + +A D    M +K
Sbjct: 1667 MLREALDFKNRMAKK 1681



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 154/367 (41%), Gaps = 51/367 (13%)

Query: 194  PNVICYASIIDGLCKDGFVNKVRVLFLDMKGR-GIYPDAFVYNSLIRVYCCAVNWEDAKG 252
            P   C  +++      G + K   +   ++ + G  P+    N L+++      W+DA+ 
Sbjct: 1074 PTRACLGALVAAYADAGMLGKATKMCERVREQYGSLPEVTHCNRLLKLLVEQRRWDDAR- 1132

Query: 253  NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
                  +L++E       LG     D  S C ++  LC +  V++  +L       G IP
Sbjct: 1133 ------KLYDEM------LGKDSGADNYSTCVLVRGLCLERRVEEGLKLIEARWGAGCIP 1180

Query: 313  DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
             VV Y+ LIDGYC  G +     L   +E++G +P   +Y +LIN   K   +E+  SL+
Sbjct: 1181 HVVFYNVLIDGYCRRGDMGRGLLLLGEMETKGFLPTLVTYGSLINWLGKKGDLEKIGSLF 1240

Query: 373  GEMISMGVRPD----NSCI---------LEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419
             EM   G  P+    NS I          +A  + + +  +  + D+  FN L+ GLC  
Sbjct: 1241 LEMRKRGFSPNVQIYNSVIDALCKCRSATQAMVILKQMFASGCDPDIITFNTLITGLCHE 1300

Query: 420  WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM------------ 467
              +R A    ++  R    PN ++YT +I G C+ G +  A DLL +M            
Sbjct: 1301 GHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTF 1360

Query: 468  ---------EEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPS 518
                       K+ E L   E   KM +R V PD    ++L   L K        N+L  
Sbjct: 1361 GALIHGLVVAGKVSEALIVRE---KMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILEE 1417

Query: 519  FLSRNQE 525
             L +N +
Sbjct: 1418 MLEKNVQ 1424



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 130/332 (39%), Gaps = 32/332 (9%)

Query: 67   ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            ++++AL     M   Q  P +  +N L+  L  K+       + E +    + PD     
Sbjct: 1372 KVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYA 1431

Query: 127  ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
             L++ F +   + DA      +  K   PD+V+   +I+G C  G  +EA    +     
Sbjct: 1432 TLIDGFIRSENLGDARKIFEFMEHKGICPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKV 1491

Query: 187  DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             C    IP+   Y ++I G  K G +N       DM  R   P+   Y+SLI  YC    
Sbjct: 1492 GC----IPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYC---- 1543

Query: 247  WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                 G+T  A  L   F N   E      P+V++Y  +I SL K   V +A   F  M 
Sbjct: 1544 ---KTGDTDFAEGL---FANMQAE---ALSPNVVTYTILIGSLFKKDKVLRAGLYFETML 1594

Query: 307  SRGIIPDVVVYSSLIDGY-----CLMGRI----------DDARKLFVSIESEGCIPDTSS 351
                 P+ V    L++G      C++  I          D    +F  +  +   P  S+
Sbjct: 1595 LNHCSPNDVTLHYLVNGLTSCTPCVINSICCNTSEVHGKDALLVVFKKLVFDIGDPRNSA 1654

Query: 352  YNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            YN +I S  +   + EAL     M   G  P+
Sbjct: 1655 YNAIIFSLCRHNMLREALDFKNRMAKKGYVPN 1686



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 124/285 (43%), Gaps = 32/285 (11%)

Query: 68   LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSE------RLNTIGLLPD 121
            L DA   F +M H    P + S N+++      K Y  F  +SE       +  +G +PD
Sbjct: 1443 LGDARKIFEFMEHKGICPDIVSCNAMI------KGYCQFGMMSEAILCMSNMRKVGCIPD 1496

Query: 122  FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
              +   +++ + K   ++ A   L  ++++   P+VVT   LI G C  G    A GLF 
Sbjct: 1497 EFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDFAEGLFA 1556

Query: 182  KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD----AFVYNSL 237
               A      + PNV+ Y  +I  L K   V +  + F  M      P+     ++ N L
Sbjct: 1557 NMQA----EALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGL 1612

Query: 238  IRVYCCAVN-----WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292
                 C +N       +  G   A L + ++ V   G+      P   +Y +II SLC+ 
Sbjct: 1613 TSCTPCVINSICCNTSEVHGK-DALLVVFKKLVFDIGD------PRNSAYNAIIFSLCRH 1665

Query: 293  VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
             ++ +A +    M  +G +P+ + + SL+ G+C +G+  + R + 
Sbjct: 1666 NMLREALDFKNRMAKKGYVPNPITFLSLLYGFCSVGKSVNWRTIL 1710


>gi|224135613|ref|XP_002322117.1| predicted protein [Populus trichocarpa]
 gi|222869113|gb|EEF06244.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 109/470 (23%), Positives = 199/470 (42%), Gaps = 47/470 (10%)

Query: 74  FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133
           +FN ++ + P P + +F++L+ A   +        L + +   G+ PD +  +IL++   
Sbjct: 294 YFNMVVRIGPKPNVVTFSTLIDAYCKEGNLDKAFVLFDVMAGNGVTPDLIVYSILIDGLF 353

Query: 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
           K   + D    L   L K    DVV     +      G       ++ + +       + 
Sbjct: 354 KAGRLEDGQRLLLVALDKGIKLDVVGFSSAMDAYVKIGDLGRVIQIYKRML----NEGIS 409

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           PNV+  + +I G C++G + +   LF+ +   G  P    Y++LI  +C         GN
Sbjct: 410 PNVVSCSILIKGFCQNGRILEACGLFVQILKLGFEPSILTYSALIAGFC-------KSGN 462

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
                 L+E+ +         C PD + Y  +IN LCK  LV  A   F    +RG+ P+
Sbjct: 463 LRDGFYLYEDMIKKR------CEPDTIVYSVLINGLCKQGLVGDALRFFFQAVNRGLSPN 516

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
           V   ++L+D +C +  I  A K++  +       DT +Y  LI   ++  +V+EAL L+ 
Sbjct: 517 VFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKADTVTYTILIKGAAQFGRVDEALMLFF 576

Query: 374 EMISMGVRP---------DNSCILEAAE----LFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           +M+    +P         D  C L+ +     +F  +       D+ ++N L++   +  
Sbjct: 577 QMLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIFDFMCKNAVAPDIAIYNVLINMHSREG 636

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIEL 480
            L +A  LF  +   GP+P+V T+  MIC  C                   +    A++L
Sbjct: 637 HLEAALGLFVHVVERGPKPDVFTFNTMICCYC-----------------NFKRLDDAVQL 679

Query: 481 LHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
             KM    ++P+ IT +IL +   ++    + M +    L    E + +T
Sbjct: 680 FAKMTSEQLRPNAITFTILIDAFCREGRMDDAMLMFSKMLEEGPEPNLVT 729



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 114/410 (27%), Positives = 186/410 (45%), Gaps = 48/410 (11%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           KSG   L D    +  MI  +  P    ++ L+  L  +    + +    +    GL P+
Sbjct: 459 KSGN--LRDGFYLYEDMIKKRCEPDTIVYSVLINGLCKQGLVGDALRFFFQAVNRGLSPN 516

Query: 122 FVSLNILMNCFCKM---IGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178
             +LN L++ FC++   +G    +  +G +  K    D VT   LI+G    G+  EA  
Sbjct: 517 VFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKA---DTVTYTILIKGAAQFGRVDEALM 573

Query: 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238
           LF + +  D +P+VI     Y ++IDGLCK    +    +F  M    + PD  +YN LI
Sbjct: 574 LFFQMLKKDFKPDVIT----YCTLIDGLCKLKKSSAGLCIFDFMCKNAVAPDIAIYNVLI 629

Query: 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298
                  N    +G+  AAL L    V    +      PDV ++ ++I   C    +D A
Sbjct: 630 -------NMHSREGHLEAALGLFVHVVERGPK------PDVFTFNTMICCYCNFKRLDDA 676

Query: 299 KELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358
            +LF  M S  + P+ + ++ LID +C  GR+DDA  +F  +  EG  P+  +Y+ LI+ 
Sbjct: 677 VQLFAKMTSEQLRPNAITFTILIDAFCREGRMDDAMLMFSKMLEEGPEPNLVTYSCLIHG 736

Query: 359 YSKIEK-VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
           Y K +  +E  L LY EM+   + P                      ++  ++ L+DGLC
Sbjct: 737 YFKSQSMMESGLKLYNEMLENNIAP----------------------NIVSYSILIDGLC 774

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           K   ++ A   F+        P+V+ YT++I G C  G + +A  L  +M
Sbjct: 775 KRGLMKEASCAFRCALDKHLLPDVIAYTILIRGYCKVGRLTEAMMLYDNM 824



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 113/431 (26%), Positives = 191/431 (44%), Gaps = 52/431 (12%)

Query: 116 IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
           +G  P  ++ + L+  FCK   + D F     +++K   PD +    LI GLC QG   +
Sbjct: 441 LGFEPSILTYSALIAGFCKSGNLRDGFYLYEDMIKKRCEPDTIVYSVLINGLCKQGLVGD 500

Query: 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK-DGFVNKVRVLFLDMKGRGIYPDAFVY 234
           A   F + V       + PNV    +++D  C+    V  ++V +L M    I  D   Y
Sbjct: 501 ALRFFFQAV----NRGLSPNVFTLNTLLDSFCRLKCIVGAMKVYYL-MGMLNIKADTVTY 555

Query: 235 NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294
             LI+            G    AL L  + +  + +      PDV++YC++I+ LCK   
Sbjct: 556 TILIK-------GAAQFGRVDEALMLFFQMLKKDFK------PDVITYCTLIDGLCKLKK 602

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
                 +F  M    + PD+ +Y+ LI+ +   G ++ A  LFV +   G  PD  ++NT
Sbjct: 603 SSAGLCIFDFMCKNAVAPDIAIYNVLINMHSREGHLEAALGLFVHVVERGPKPDVFTFNT 662

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC----ILEAAELFRTLHNTK 401
           +I  Y   +++++A+ L+ +M S  +RP         D  C    + +A  +F  +    
Sbjct: 663 MICCYCNFKRLDDAVQLFAKMTSEQLRPNAITFTILIDAFCREGRMDDAMLMFSKMLEEG 722

Query: 402 FELDLTVFNCLVDGLCKSWR-LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
            E +L  ++CL+ G  KS   + S  +L+ ++      PN+V+Y+++I GLC  G +++A
Sbjct: 723 PEPNLVTYSCLIHGYFKSQSMMESGLKLYNEMLENNIAPNIVSYSILIDGLCKRGLMKEA 782

Query: 461 ---------YDLLPDMEE---------KIRECLKAIELLHKMAKRYVKPDEITVSILEEL 502
                      LLPD+           K+    +A+ L   M    + PD      LEE 
Sbjct: 783 SCAFRCALDKHLLPDVIAYTILIRGYCKVGRLTEAMMLYDNMLLNRLTPDRFLERTLEEY 842

Query: 503 -LNKDENCHEC 512
            L K    H C
Sbjct: 843 QLKKAGAKHLC 853



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 155/345 (44%), Gaps = 39/345 (11%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           + DAL FF   ++   +P + + N+LL +    K  V  + +   +  + +  D V+  I
Sbjct: 498 VGDALRFFFQAVNRGLSPNVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKADTVTYTI 557

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           L+    +   V +A +   ++L+K F PDV+T   LI GLC   K +    +F     F 
Sbjct: 558 LIKGAAQFGRVDEALMLFFQMLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIFD----FM 613

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
           C+  V P++  Y  +I+   ++G +     LF+ +  RG  PD F +N++I  YC     
Sbjct: 614 CKNAVAPDIAIYNVLINMHSREGHLEAALGLFVHVVERGPKPDVFTFNTMICCYCNFKRL 673

Query: 248 EDA----------------------------KGNTSAALELHEEFVNGNGELGVICHPDV 279
           +DA                            +G    A+ +  + +    E      P++
Sbjct: 674 DDAVQLFAKMTSEQLRPNAITFTILIDAFCREGRMDDAMLMFSKMLEEGPE------PNL 727

Query: 280 LSYCSIINSLCK-DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
           ++Y  +I+   K   +++   +L+ +M    I P++V YS LIDG C  G + +A   F 
Sbjct: 728 VTYSCLIHGYFKSQSMMESGLKLYNEMLENNIAPNIVSYSILIDGLCKRGLMKEASCAFR 787

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
               +  +PD  +Y  LI  Y K+ ++ EA+ LY  M+   + PD
Sbjct: 788 CALDKHLLPDVIAYTILIRGYCKVGRLTEAMMLYDNMLLNRLTPD 832



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 118/541 (21%), Positives = 204/541 (37%), Gaps = 122/541 (22%)

Query: 76  NYMIHMQPTPF------------------MPSFNSLLGALAGKKYYVNFICLSERLNTIG 117
           + +I +QP PF                   PSF +LL  L   + +    C+ ++   + 
Sbjct: 85  DVIISLQPKPFSAIRFFEWAESFFISPLSAPSFCALLHVLLQNQLFSRAACVFDKF-IMQ 143

Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
              D+ +L+   + FC +   + +                V  G LI   C +G F ++ 
Sbjct: 144 FGNDYDTLDAFRDGFCDLDSTNHS----------------VVYGFLIESYCRKGMFDKSV 187

Query: 178 GLFTKFV--AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
            +F           PNV+   +   S+ID  C +  V+K   L   M+ +      FV N
Sbjct: 188 DIFMHVCVKGIFVSPNVV--YLLLGSLIDSHCVEVIVDKYGELCSAMREQPFSVYEFVMN 245

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
             +            KG     L  H+  V G   L +I    +L    + N       +
Sbjct: 246 RFMN-----------KGEVEMGLRFHKALVQGGFGLDIITCNKILKGIWMQND------I 288

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
             A + F  +   G  P+VV +S+LID YC  G +D A  LF  +   G  PD   Y+ L
Sbjct: 289 GVADDYFNMVVRIGPKPNVVTFSTLIDAYCKEGNLDKAFVLFDVMAGNGVTPDLIVYSIL 348

Query: 356 I-----------------------------------NSYSKIEKVEEALSLYGEMISMGV 380
           I                                   ++Y KI  +   + +Y  M++ G+
Sbjct: 349 IDGLFKAGRLEDGQRLLLVALDKGIKLDVVGFSSAMDAYVKIGDLGRVIQIYKRMLNEGI 408

Query: 381 RPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
            P+             N  ILEA  LF  +    FE  +  ++ L+ G CKS  LR  + 
Sbjct: 409 SPNVVSCSILIKGFCQNGRILEACGLFVQILKLGFEPSILTYSALIAGFCKSGNLRDGFY 468

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA------------------YDLLPDMEE 469
           L++ + +   EP+ + Y+V+I GLC +G +  A                   + L D   
Sbjct: 469 LYEDMIKKRCEPDTIVYSVLINGLCKQGLVGDALRFFFQAVNRGLSPNVFTLNTLLDSFC 528

Query: 470 KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKL 529
           +++  + A+++ + M    +K D +T +IL +   +     E + L    L ++ +   +
Sbjct: 529 RLKCIVGAMKVYYLMGMLNIKADTVTYTILIKGAAQFGRVDEALMLFFQMLKKDFKPDVI 588

Query: 530 T 530
           T
Sbjct: 589 T 589



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 131/289 (45%), Gaps = 16/289 (5%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            +++AL  F  M+     P + ++ +L+  L   K     +C+ + +    + PD    N
Sbjct: 567 RVDEALMLFFQMLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIFDFMCKNAVAPDIAIYN 626

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +L+N   +   +  A      ++ +   PDV T   +I   C   +  +A  LF K  + 
Sbjct: 627 VLINMHSREGHLEAALGLFVHVVERGPKPDVFTFNTMICCYCNFKRLDDAVQLFAKMTSE 686

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
             RPN I   I    +ID  C++G ++   ++F  M   G  P+   Y+ LI  Y     
Sbjct: 687 QLRPNAITFTI----LIDAFCREGRMDDAMLMFSKMLEEGPEPNLVTYSCLIHGYF---- 738

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
              ++    + L+L+ E +  N        P+++SY  +I+ LCK  L+ +A   F    
Sbjct: 739 --KSQSMMESGLKLYNEMLENN------IAPNIVSYSILIDGLCKRGLMKEASCAFRCAL 790

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
            + ++PDV+ Y+ LI GYC +GR+ +A  L+ ++      PD     TL
Sbjct: 791 DKHLLPDVIAYTILIRGYCKVGRLTEAMMLYDNMLLNRLTPDRFLERTL 839



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 89/183 (48%), Gaps = 3/183 (1%)

Query: 60  NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
           N  S E  L  AL  F +++   P P + +FN+++      K   + + L  ++ +  L 
Sbjct: 630 NMHSREGHLEAALGLFVHVVERGPKPDVFTFNTMICCYCNFKRLDDAVQLFAKMTSEQLR 689

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ ++  IL++ FC+   + DA +   ++L +   P++VT  CLI G        E SGL
Sbjct: 690 PNAITFTILIDAFCREGRMDDAMLMFSKMLEEGPEPNLVTYSCLIHGYFKSQSMME-SGL 748

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
             K        N+ PN++ Y+ +IDGLCK G + +    F     + + PD   Y  LIR
Sbjct: 749 --KLYNEMLENNIAPNIVSYSILIDGLCKRGLMKEASCAFRCALDKHLLPDVIAYTILIR 806

Query: 240 VYC 242
            YC
Sbjct: 807 GYC 809


>gi|115473997|ref|NP_001060597.1| Os07g0671200 [Oryza sativa Japonica Group]
 gi|22831126|dbj|BAC15987.1| putative crp1(chloroplast RNA processing 1) protein [Oryza sativa
           Japonica Group]
 gi|113612133|dbj|BAF22511.1| Os07g0671200 [Oryza sativa Japonica Group]
          Length = 551

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 160/341 (46%), Gaps = 43/341 (12%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P V  Y  ++DGL     + KV  +F +MK + +  D + Y+S+I  YC A       GN
Sbjct: 211 PTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRA-------GN 263

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
              A E+ +E V GNG       P+  +Y ++IN  CK   ++ A+ L  DM+ RG+  +
Sbjct: 264 VRRASEVFDECV-GNG-----IEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGIN 317

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
            +V++++IDGYC    +D A ++ + +E  G   D  +YNTL     +  +++EA +L  
Sbjct: 318 QIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLR 377

Query: 374 EMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
            MI  GVRP++               ++EA  LFR +     E  L  +N ++DG  K  
Sbjct: 378 IMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKG 437

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIEL 480
            +R A     ++ + G  P++ +Y  ++ G C+ G ++                  A+ L
Sbjct: 438 SIREAERFKNEMEKKGLVPDIYSYAALVHGHCVNGKVD-----------------VALRL 480

Query: 481 LHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
             +M +R  KP+ +  + L   L K+    E   L  + L 
Sbjct: 481 FEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQLYDNMLG 521



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 151/345 (43%), Gaps = 41/345 (11%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + ++  L+  L+  +       + E + +  L  D    + ++N +C+   V  A   
Sbjct: 211 PTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEV 270

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
               +     P+  T G LI G C  G+   A  L T          V  N I + ++ID
Sbjct: 271 FDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQV----RGVGINQIVFNTMID 326

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL----------------IRV-------- 240
           G C+   V+K   + + M+  GI  D + YN+L                +R+        
Sbjct: 327 GYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRP 386

Query: 241 ----YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
               Y   ++    +G+   A  L  E   GNG       P +++Y  +++   K   + 
Sbjct: 387 NHVSYTTLISIHCNEGDMVEARRLFREMA-GNG-----AEPSLVTYNVMMDGYIKKGSIR 440

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A+    +M+ +G++PD+  Y++L+ G+C+ G++D A +LF  ++  G  P+  +Y  LI
Sbjct: 441 EAERFKNEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALI 500

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK 401
           +  +K  + EEA  LY  M+  G+ PD++     + L  +LH  K
Sbjct: 501 SGLAKEGRSEEAFQLYDNMLGDGLTPDDALY---SALVGSLHTDK 542



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 126/313 (40%), Gaps = 64/313 (20%)

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G    A+ L  K  A  C  +V P  +  + ++DG CK G V   R L  +M   G+  +
Sbjct: 121 GHLDTAADLL-KQAATSCPDSVTP--LSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVN 177

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
           A                                                L Y S++++  
Sbjct: 178 A------------------------------------------------LCYNSLLDAYT 189

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           ++   D+  E+   M++ GI P V  Y+ L+DG      I     +F  ++S+    D  
Sbjct: 190 REKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVY 249

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI------------LEAAELFRT-L 397
            Y+++IN+Y +   V  A  ++ E +  G+ P+                +EAAE+  T +
Sbjct: 250 FYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDM 309

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                 ++  VFN ++DG C+   +  A E+   + + G E +V TY  + CGL     +
Sbjct: 310 QVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRM 369

Query: 458 EKAYDLLPDMEEK 470
           ++A +LL  M EK
Sbjct: 370 DEAKNLLRIMIEK 382


>gi|356557251|ref|XP_003546931.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Glycine max]
          Length = 808

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 108/417 (25%), Positives = 179/417 (42%), Gaps = 66/417 (15%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G +P  V  N++++ +CK   +  A   L  +  K   P V T G LI G C  G+F   
Sbjct: 231 GCVPHVVFYNMIIDGYCKKGDLQCATRTLKELKMKGVLPTVETYGALINGFCKAGEFEAV 290

Query: 177 SGLFTKFVAFDCRPNVI-------------------------------PNVICYASIIDG 205
             L T+  A     NV                                P++  Y ++I+ 
Sbjct: 291 DQLLTEMAARGLNMNVKVFNNVIDAEFKYGLVTKAAETMRRMAEMGCGPDITTYNTMINF 350

Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE-- 263
            CK G + +        K RG+ P+ F Y  L+  YC   ++  A G      E+ E+  
Sbjct: 351 SCKGGRIKEADEFLEKAKERGLLPNKFSYTPLMHAYCKQGDYVKAAGMLFRIAEIGEKPD 410

Query: 264 ------FVNG---NGELGVI-----------CHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                 F++G   +GE+ V              PD   Y  +++ LCK+      K L  
Sbjct: 411 LVSYGAFIHGVVVHGEIDVALMVREKMMEKGVFPDAQIYNVLMSGLCKNGRFPAMKLLLS 470

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
           +M  R + PDV V+++L+DG+   G +D+A K+F  I  +G  P    YN +I  + K  
Sbjct: 471 EMLDRNVQPDVYVFATLMDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFG 530

Query: 364 KVEEALSLYGEMISMGVRPDN---SCILE----------AAELFRTLHNTKFELDLTVFN 410
           K+ +ALS   +M ++   PD    S +++          A ++F  +   KF+ ++  + 
Sbjct: 531 KMTDALSCLNKMKNVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYT 590

Query: 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            L++G CK   +  A ++F+ +  +   PNVVTYT ++ G    G  EKA  +   M
Sbjct: 591 SLINGFCKKADMIRAEKVFRGMKSFDLVPNVVTYTTLVGGFFKAGKPEKATSIFELM 647



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 108/451 (23%), Positives = 180/451 (39%), Gaps = 60/451 (13%)

Query: 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVV----TLGCLIRGLCMQGKFT 174
           LP  V+ N L+N   K   V  A     ++L+       V    T   +++GLC  GK  
Sbjct: 159 LPTVVASNSLLNGLVKSGKVDVALQLYDKMLQTDDGTGAVVDNYTTSIVVKGLCNLGKIE 218

Query: 175 EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVY 234
           E   L        C    +P+V+ Y  IIDG CK G +        ++K +G+ P    Y
Sbjct: 219 EGRRLVKDRWGKGC----VPHVVFYNMIIDGYCKKGDLQCATRTLKELKMKGVLPTVETY 274

Query: 235 NSLIRVYCCAVNWED--------AKGNTSAALELHEEFVNGNGELGVI------------ 274
            +LI  +C A  +E         A    +  +++    ++   + G++            
Sbjct: 275 GALINGFCKAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEFKYGLVTKAAETMRRMAE 334

Query: 275 --CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
             C PD+ +Y ++IN  CK   + +A E     K RG++P+   Y+ L+  YC  G    
Sbjct: 335 MGCGPDITTYNTMINFSCKGGRIKEADEFLEKAKERGLLPNKFSYTPLMHAYCKQGDYVK 394

Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------- 383
           A  +   I   G  PD  SY   I+      +++ AL +  +M+  GV PD         
Sbjct: 395 AAGMLFRIAEIGEKPDLVSYGAFIHGVVVHGEIDVALMVREKMMEKGVFPDAQIYNVLMS 454

Query: 384 ----NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439
               N        L   + +   + D+ VF  L+DG  ++  L  A ++FK + R G +P
Sbjct: 455 GLCKNGRFPAMKLLLSEMLDRNVQPDVYVFATLMDGFIRNGELDEAIKIFKVIIRKGVDP 514

Query: 440 NVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
            +V Y  MI G C                 K  +   A+  L+KM   +  PDE T S +
Sbjct: 515 GIVGYNAMIKGFC-----------------KFGKMTDALSCLNKMKNVHHAPDEYTYSTV 557

Query: 500 EELLNKDENCHECMNLLPSFLSRNQEESKLT 530
            +   K  +    + +    +    + + +T
Sbjct: 558 IDGYVKQHDMSSALKMFGQMMKHKFKPNVIT 588



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 165/353 (46%), Gaps = 33/353 (9%)

Query: 107 ICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166
           + + E++   G+ PD    N+LM+  CK        + L  +L +   PDV     L+ G
Sbjct: 431 LMVREKMMEKGVFPDAQIYNVLMSGLCKNGRFPAMKLLLSEMLDRNVQPDVYVFATLMDG 490

Query: 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
               G+  EA  +F   +    R  V P ++ Y ++I G CK G +         MK   
Sbjct: 491 FIRNGELDEAIKIFKVII----RKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNKMKNVH 546

Query: 227 IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII 286
             PD + Y+++I  Y         + + S+AL++  + +    +      P+V++Y S+I
Sbjct: 547 HAPDEYTYSTVIDGYV-------KQHDMSSALKMFGQMMKHKFK------PNVITYTSLI 593

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           N  CK   + +A+++F  MKS  ++P+VV Y++L+ G+   G+ + A  +F  +   GC 
Sbjct: 594 NGFCKKADMIRAEKVFRGMKSFDLVPNVVTYTTLVGGFFKAGKPEKATSIFELMLMNGCP 653

Query: 347 PDTSSYNTLINSYSKIEK----VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF 402
           P+ ++++ LIN  +        +EE  S+  E          S IL+    F  + +  +
Sbjct: 654 PNDATFHYLINGLTNTATSPVLIEEKDSMENE---------RSLILD---FFTMMLSEGW 701

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
           +  +  +N ++  LCK   + +A  L  K+   G   + V +T M+ GLC +G
Sbjct: 702 DQVIAAYNSVIVCLCKHGMVDTAQLLLTKMLTKGFLIDSVCFTAMLHGLCHKG 754



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 114/462 (24%), Positives = 190/462 (41%), Gaps = 63/462 (13%)

Query: 71  ALCFFNYMIHMQPTPFMPSFN-----SLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
           AL FF++       PF  S +     SLL  LA  + +     + E +    L P   + 
Sbjct: 73  ALKFFDWA---STRPFSCSLDGVAHSSLLKLLASFRVFPEIELVLENMKAQHLKPTREAF 129

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFS--PDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
           + L+  + +  G  D  + L   +R++ +  P VV    L+ GL   GK   A  L+ K 
Sbjct: 130 SALILAYGES-GSLDRALQLFHTVREMHNCLPTVVASNSLLNGLVKSGKVDVALQLYDKM 188

Query: 184 VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243
           +  D     + +    + ++ GLC  G + + R L  D  G+G  P    YN +I  YC 
Sbjct: 189 LQTDDGTGAVVDNYTTSIVVKGLCNLGKIEEGRRLVKDRWGKGCVPHVVFYNMIIDGYC- 247

Query: 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303
                  KG+   A    +E        GV+  P V +Y ++IN  CK    +   +L  
Sbjct: 248 ------KKGDLQCATRTLKELKMK----GVL--PTVETYGALINGFCKAGEFEAVDQLLT 295

Query: 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363
           +M +RG+  +V V++++ID     G +  A +    +   GC PD ++YNT+IN   K  
Sbjct: 296 EMAARGLNMNVKVFNNVIDAEFKYGLVTKAAETMRRMAEMGCGPDITTYNTMINFSCKGG 355

Query: 364 KVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLR 423
           +++EA     +    G+ P+                 KF      +  L+   CK     
Sbjct: 356 RIKEADEFLEKAKERGLLPN-----------------KFS-----YTPLMHAYCKQGDYV 393

Query: 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHK 483
            A  +  ++   G +P++V+Y   I G+ + G I        D+   +RE         K
Sbjct: 394 KAAGMLFRIAEIGEKPDLVSYGAFIHGVVVHGEI--------DVALMVRE---------K 436

Query: 484 MAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQE 525
           M ++ V PD    ++L   L K+        LL   L RN +
Sbjct: 437 MMEKGVFPDAQIYNVLMSGLCKNGRFPAMKLLLSEMLDRNVQ 478



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 125/281 (44%), Gaps = 25/281 (8%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           EL++A+  F  +I     P +  +N+++          + +    ++  +   PD  + +
Sbjct: 496 ELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNKMKNVHHAPDEYTYS 555

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            +++ + K   +S A    G++++  F P+V+T   LI G C +     A  +F    +F
Sbjct: 556 TVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFRGMKSF 615

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           D    ++PNV+ Y +++ G  K G   K   +F  M   G  P+   ++ LI        
Sbjct: 616 D----LVPNVVTYTTLVGGFFKAGKPEKATSIFELMLMNGCPPNDATFHYLI-------- 663

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVIC-----------HPDVLSYCSIINSLCKDVLV 295
             +   NT+ +  L EE  +   E  +I               + +Y S+I  LCK  +V
Sbjct: 664 --NGLTNTATSPVLIEEKDSMENERSLILDFFTMMLSEGWDQVIAAYNSVIVCLCKHGMV 721

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           D A+ L   M ++G + D V +++++ G C  G+  + R +
Sbjct: 722 DTAQLLLTKMLTKGFLIDSVCFTAMLHGLCHKGKSKEWRNI 762


>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 966

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/426 (26%), Positives = 190/426 (44%), Gaps = 60/426 (14%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142
           P+P +  FNSL+      + Y     L  R+NT G  P +V  NI +   C    + +  
Sbjct: 339 PSPSL--FNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGSICGREELPNP- 395

Query: 143 VALGRILRKVFSPDVVTLGCLI---------RGLCMQGKFTEASGLFTKFVAFDCRPNVI 193
             L  +  KV+  +++   C++         R LC  GKF +A  +  + +    R   +
Sbjct: 396 -ELLDLAEKVYE-EMLVASCVLNKINTANFARCLCGVGKFEKAFQIVKEMM----RKGFV 449

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P+   Y  +I  LC+   V+K  +LF +MK  G+ PD + Y  LI  +C A       G 
Sbjct: 450 PDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKA-------GL 502

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
              A    +E  +        C P+V++Y +++++  K   + +A ++F  M      P+
Sbjct: 503 IEQAQSWFDEMRSAG------CSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPN 556

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSI----------------ESEGCIPDTSSYNTLIN 357
            + YS+LIDG C  G I  A +++  +                +++   P+  +Y  L+N
Sbjct: 557 AITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVN 616

Query: 358 SYSKIEKVEEALSLYGEMISMGVRP---------DNSC----ILEAAELFRTLHNTKFEL 404
              K +KV +A  L   M++ G  P         D  C    I  A E+F  +    +  
Sbjct: 617 GLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLP 676

Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
            +  +  L+D + K  RL  A ++  ++ +    PNVVTYT M+ GLC  G  EKA +LL
Sbjct: 677 SVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLL 736

Query: 465 PDMEEK 470
             ME+K
Sbjct: 737 SLMEKK 742



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/441 (25%), Positives = 199/441 (45%), Gaps = 53/441 (12%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G +E   A  +F+ M     +P + ++ +LL A    K       +  R+      P+
Sbjct: 499 KAGLIE--QAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPN 556

Query: 122 FVSLNILMNCFCK-------------MIGVSD----AFVALGRILRKVFSPDVVTLGCLI 164
            ++ + L++  CK             +IG SD     F   G+    + SP+VVT G L+
Sbjct: 557 AITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTI-SPNVVTYGALV 615

Query: 165 RGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224
            GLC   K ++A  L    +A  C PN I     Y +++DG CK G ++  + +FL M  
Sbjct: 616 NGLCKAQKVSDAHDLLDAMLAAGCEPNQI----VYDALVDGFCKVGEIDSAQEVFLRMTK 671

Query: 225 RGIYPDAFVYNSLI-RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
            G  P    Y SLI R++          G    A+++  + +  +      C+P+V++Y 
Sbjct: 672 CGYLPSVHTYTSLIDRMF--------KDGRLDLAMKVLSQMLKDS------CNPNVVTYT 717

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
           ++++ LCK    +KA  L   M+ +G  P+VV Y++LIDG    G++D   +LF+ ++++
Sbjct: 718 AMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTK 777

Query: 344 GCIPDTSSYNTLINS-----------YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392
           GC P+  +Y  LIN                E  +     Y +     V+  +   L +  
Sbjct: 778 GCAPNYVTYRILINHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSKRFLASLG 837

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT---YTVMIC 449
           L   + +        V+  L+D   K+ RL +A EL K++       N+ +   +T +I 
Sbjct: 838 LLEEMESHDTAPIAPVYGMLIDSFSKAGRLETALELHKEMMEVSSSLNMASKDMHTSLIQ 897

Query: 450 GLCIEGGIEKAYDLLPDMEEK 470
            LC+   +E+A  L  +M  +
Sbjct: 898 ALCLSSQVEEAVALYSEMRRR 918



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 128/287 (44%), Gaps = 47/287 (16%)

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PD  +Y  +I  LC+   VDKA  LF +MK  G+ PDV  Y+ LID +C  G I+ A+  
Sbjct: 450 PDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSW 509

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC- 386
           F  + S GC P+  +Y  L+++Y K +++ +A  ++  M+     P         D  C 
Sbjct: 510 FDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCK 569

Query: 387 ---ILEAAELFRTLHNTKFELD----------------LTVFNCLVDGLCKSWRLRSAWE 427
              I +A E++  L  T   ++                +  +  LV+GLCK+ ++  A +
Sbjct: 570 AGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHD 629

Query: 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA------------------YDLLPDMEE 469
           L   +   G EPN + Y  ++ G C  G I+ A                  Y  L D   
Sbjct: 630 LLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMF 689

Query: 470 KIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
           K      A+++L +M K    P+ +T + + + L K     + +NLL
Sbjct: 690 KDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLL 736



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 105/492 (21%), Positives = 189/492 (38%), Gaps = 106/492 (21%)

Query: 92  SLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRK 151
           ++LGA+   +  V F   +ER   +G    +       +   +++G  D      R+LR+
Sbjct: 106 AVLGAVRSPELCVRFFLWAER--QVG----YKHTGACYDALAEVLGFEDPARTAERLLRE 159

Query: 152 VFSPDVVTLG----CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207
           +   D   LG     L+R  C+QG + EA     +   F  RP+ +     Y +++  L 
Sbjct: 160 IGEDDRDVLGRLLNVLVRRCCLQGLWGEALEELGRLKDFGYRPSAVT----YNALVQVLA 215

Query: 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL--HEEFV 265
             G V     +  +M   G   D     S  +  C    W DA       L+L   E+F 
Sbjct: 216 SAGQVEMAFRVQKEMSASGFCMDRSTVGSFAQALCKEGRWGDA-------LDLLEREDF- 267

Query: 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
                       D +    +I+ L +  L ++A      M+    IP+VV Y +L+ G+ 
Sbjct: 268 ----------KLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSYIPNVVTYRTLLTGFL 317

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-- 383
              ++   +++   + +EGC P  S +N+L+++Y   E    A  L+  M + G  P   
Sbjct: 318 KKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPGYV 377

Query: 384 ---------------------------------NSCIL-------------------EAA 391
                                             SC+L                   +A 
Sbjct: 378 VYNIFIGSICGREELPNPELLDLAEKVYEEMLVASCVLNKINTANFARCLCGVGKFEKAF 437

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
           ++ + +    F  D + +  ++  LC++ R+  A+ LF+++ + G  P+V TYT++I   
Sbjct: 438 QIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSF 497

Query: 452 CIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDE 493
           C  G IE+A     +M                    K ++  +A ++ H+M      P+ 
Sbjct: 498 CKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNA 557

Query: 494 ITVSILEELLNK 505
           IT S L + L K
Sbjct: 558 ITYSALIDGLCK 569



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 104/258 (40%), Gaps = 47/258 (18%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
           P+ V+   +++  CK      A   L  + +K  SP+VVT   LI GL   GK      L
Sbjct: 711 PNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLEL 770

Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDG-------------------FVNKVRV--- 217
           F +     C PN +     Y  +I+  C  G                   ++   R    
Sbjct: 771 FMQMKTKGCAPNYVT----YRILINHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQ 826

Query: 218 -----------LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266
                      L  +M+     P A VY  LI  +  A       G    ALELH+E + 
Sbjct: 827 GFSKRFLASLGLLEEMESHDTAPIAPVYGMLIDSFSKA-------GRLETALELHKEMME 879

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
            +  L  +   D+  + S+I +LC    V++A  L+ +M+ RGI+PD+  +  L+ G   
Sbjct: 880 VSSSLN-MASKDM--HTSLIQALCLSSQVEEAVALYSEMRRRGIVPDLSAFVCLVKGLIE 936

Query: 327 MGRIDDARKLFVSIESEG 344
             + ++A +L   I  EG
Sbjct: 937 RNKWNEALQLCYGICQEG 954


>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
 gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
          Length = 718

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 167/340 (49%), Gaps = 34/340 (10%)

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
           L + +   V     +I      G   EA  +F     +  +PN++     Y ++ID  C 
Sbjct: 104 LTEGYGNTVYAFSAIISAYGRSGYCNEAIKIFYSMKDYGLKPNLVT----YNAVIDA-CG 158

Query: 209 DGFVNKVRVL--FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266
            G V   RVL  F +M   G+ PD   +NSL+ V      WE       AA  L  E VN
Sbjct: 159 KGGVEFKRVLEIFDEMLRNGMQPDRITFNSLLAVCSKGGLWE-------AARSLSCEMVN 211

Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
                      D+ +Y ++++++CK   +D A E+  +M ++ I+P+VV YS++IDGY  
Sbjct: 212 RG------IDQDIFTYNTLLDAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAK 265

Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--- 383
            GR+DDAR LF  ++  G   D  SYNTL++ Y+K+ + EEA+ +  EM + G+R D   
Sbjct: 266 AGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVT 325

Query: 384 NSCILEA----------AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433
            + +L             ++F  +       +L  ++ L+D   K    R A ++F++  
Sbjct: 326 YNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFK 385

Query: 434 RYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM-EEKIR 472
           + G + +VV Y+ +I  LC  G +E A  LL +M +E IR
Sbjct: 386 KAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIR 425



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 156/317 (49%), Gaps = 20/317 (6%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALA-GKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           N+A+  F  M      P + ++N+++ A   G   +   + + + +   G+ PD ++ N 
Sbjct: 129 NEAIKIFYSMKDYGLKPNLVTYNAVIDACGKGGVEFKRVLEIFDEMLRNGMQPDRITFNS 188

Query: 128 LMNCFCKMIGVSDAFVALG-RILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           L+   C   G+ +A  +L   ++ +    D+ T   L+  +C  G+   A  + ++  A 
Sbjct: 189 LL-AVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEIMSEMPA- 246

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
               N++PNV+ Y+++IDG  K G ++  R LF +MK  GI  D   YN+L+ +Y     
Sbjct: 247 ---KNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLGR 303

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
           +E+A       +++  E  N           DV++Y +++    K    D  +++F +MK
Sbjct: 304 FEEA-------MDVCREMENSG------IRKDVVTYNALLGGYGKQYKYDVVRKVFEEMK 350

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           +R + P+++ YS+LID Y   G   +A  +F   +  G   D   Y+ LI++  K   VE
Sbjct: 351 ARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALCKNGLVE 410

Query: 367 EALSLYGEMISMGVRPD 383
            A+SL  EM   G+RP+
Sbjct: 411 SAVSLLDEMTKEGIRPN 427



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 101/199 (50%), Gaps = 14/199 (7%)

Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
           ++I++L +   V+ AK +F    + G    V  +S++I  Y   G  ++A K+F S++  
Sbjct: 82  AMISTLGRLGKVEMAKTVFKAALTEGYGNTVYAFSAIISAYGRSGYCNEAIKIFYSMKDY 141

Query: 344 GCIPDTSSYNTLINSYSKIE-KVEEALSLYGEMISMGVRPD------------NSCILEA 390
           G  P+  +YN +I++  K   + +  L ++ EM+  G++PD               + EA
Sbjct: 142 GLKPNLVTYNAVIDACGKGGVEFKRVLEIFDEMLRNGMQPDRITFNSLLAVCSKGGLWEA 201

Query: 391 AELFR-TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
           A      + N   + D+  +N L+D +CK  +L  A+E+  ++P     PNVVTY+ MI 
Sbjct: 202 ARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMID 261

Query: 450 GLCIEGGIEKAYDLLPDME 468
           G    G ++ A +L  +M+
Sbjct: 262 GYAKAGRLDDARNLFNEMK 280


>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
          Length = 579

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 111/433 (25%), Positives = 188/433 (43%), Gaps = 68/433 (15%)

Query: 63  SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF 122
            G VE  +A    + M H    P + + N ++  L   +       + E  +  G  PD 
Sbjct: 135 GGRVE--EAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDC 192

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           V+   L++   K   V +A+    ++L    + + V    LIR   + G+  +   +F +
Sbjct: 193 VTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKE 252

Query: 183 FVAFDCRPNV-------------------------------IPNVICYASIIDGLCKDGF 211
            +   C+P++                               +P+V  Y+ +I GL K G 
Sbjct: 253 LIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQ 312

Query: 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGEL 271
             +   +F  MK +G   DA  YN+++  +C         G    A E+ EE        
Sbjct: 313 ARETSNIFHAMKQQGFALDARAYNAVVDGFC-------KSGKVHKAYEILEEMKEK---- 361

Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
                P V +Y +I++ L K   +D+A  LF + KS+GI  +VV+YSSLIDG+  +GRID
Sbjct: 362 --CVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRID 419

Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAA 391
           +A  +   +  +G  P+  ++N+L+++  K E++ EAL  +  M  M   P+        
Sbjct: 420 EAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNT------- 472

Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
                            ++ L++GLC+  +   A+  ++ + + G  PNVVTYT MI GL
Sbjct: 473 ---------------YTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGL 517

Query: 452 CIEGGIEKAYDLL 464
              G I  AY L 
Sbjct: 518 AKVGNITDAYSLF 530



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 115/462 (24%), Positives = 194/462 (41%), Gaps = 74/462 (16%)

Query: 113 LNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172
           L   GL PD VS   ++   CK   + +A     ++  +   P       +I G    G+
Sbjct: 9   LKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGR 68

Query: 173 FTEASGLFTKFVAFDCRPNVI------------------------------PNVICYASI 202
           F +A  L  +     C P+V+                              PN   Y  I
Sbjct: 69  FEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNII 128

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
           ID LC  G V +   +  +M+   ++P+    N ++   C A   E+A     +A +   
Sbjct: 129 IDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRG- 187

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
                       C+PD ++YCS+I+ L K   VD+A  LF  M   G   + VVY+SLI 
Sbjct: 188 ------------CNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIR 235

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
            + + GR +D  K+F  +   GC PD +  NT ++   K  +VE+   ++ ++ S G  P
Sbjct: 236 NFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLP 295

Query: 383 D--NSCIL-----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
           D  +  IL           E + +F  +    F LD   +N +VDG CKS ++  A+E+ 
Sbjct: 296 DVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEIL 355

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KI 471
           +++     +P V TY  ++ GL     +++AY L  + +                   K+
Sbjct: 356 EEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKV 415

Query: 472 RECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECM 513
               +A  +L +M K+ + P+  T + L + L K E  +E +
Sbjct: 416 GRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEAL 457



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 145/307 (47%), Gaps = 19/307 (6%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+GEVE    +  F  +      P + S++ L+  L           +   +   G   D
Sbjct: 274 KAGEVEKGRMI--FEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALD 331

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             + N +++ FCK   V  A+  L  +  K   P V T G ++ GL    +  EA  LF 
Sbjct: 332 ARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFE 391

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           +  +      +  NV+ Y+S+IDG  K G +++  ++  +M  +G+ P+ + +NSL+   
Sbjct: 392 EAKS----KGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLL--- 444

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
                  DA      A E++E  V       + C P+  +Y  +IN LC+    +KA   
Sbjct: 445 -------DA---LVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVF 494

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           + DM+ +G++P+VV Y+++I G   +G I DA  LF   ++ G IPD +S+N LI   S 
Sbjct: 495 WQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSN 554

Query: 362 IEKVEEA 368
             +  EA
Sbjct: 555 ANRAMEA 561



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 147/340 (43%), Gaps = 62/340 (18%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  PD   LN  M+C  K   V    +    I    F PDV +   LI GL   G+  E 
Sbjct: 257 GCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARET 316

Query: 177 SGLF----TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF 232
           S +F     +  A D R         Y +++DG CK G V+K   +  +MK + + P   
Sbjct: 317 SNIFHAMKQQGFALDAR--------AYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVA 368

Query: 233 VYNSLI-------RVYCCAVNWEDAKGNTSAALEL----HEEFVNGNGELGVI------- 274
            Y +++       R+    + +E+AK   S  +EL    +   ++G G++G I       
Sbjct: 369 TYGAIVDGLAKIDRLDEAYMLFEEAK---SKGIELNVVLYSSLIDGFGKVGRIDEAYLIL 425

Query: 275 -------CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327
                    P+V ++ S++++L K   +++A   F  MK     P+   YS LI+G C +
Sbjct: 426 EEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRV 485

Query: 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI 387
            + + A   +  ++ +G +P+  +Y T+I+  +K+  + +A SL+    + G  PD +  
Sbjct: 486 QKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAAS- 544

Query: 388 LEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427
                                FN L++G+  + R   A++
Sbjct: 545 ---------------------FNALIEGMSNANRAMEAYQ 563



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 101/218 (46%), Gaps = 49/218 (22%)

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A + F ++K++G+ PD V Y+S+I   C  GR+ +A +LF  +E+E  +P   +YNT+I 
Sbjct: 2   AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIM 61

Query: 358 SY-----------------------------------SKIEKVEEALSLYGEMISMGVRP 382
            Y                                    K  KV+EALSL+ E++     P
Sbjct: 62  GYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLF-EVMKKDAEP 120

Query: 383 DNSC-------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
           ++S              + EA  +   + +     +L   N +VD LCK+ +L  A+++F
Sbjct: 121 NSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIF 180

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +   + G  P+ VTY  +I GL  +G +++AY L   M
Sbjct: 181 ESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKM 218


>gi|357142282|ref|XP_003572519.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 706

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 119/479 (24%), Positives = 210/479 (43%), Gaps = 83/479 (17%)

Query: 81  MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC------K 134
           M P P   ++N+LL  L   K + +   L E +      PD ++  +L++ FC      +
Sbjct: 184 MPPAPNSYAYNTLLKGLCSAKQWGDAEELVEEMTRNDSPPDDLTFGMLIHSFCQSGLVDR 243

Query: 135 MIGVSD-------------------AFVALGRILR--KVFS-----PDVVTLGCLIRGLC 168
            +G+ D                    F  LGR+     +FS     PD+ +   +++GLC
Sbjct: 244 AMGILDRMSKCGCTPGAIVYNEIISCFAELGRVKEALHLFSCMPCKPDIFSYNAVLKGLC 303

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
              ++ +A  L T+ V  DC P+ +     + ++I  LC  G V+    +   M   G  
Sbjct: 304 RAERWEDAGELITEMVRKDCSPDEVT----FNTVISFLCHKGLVDCALEVVDQMPKYGRK 359

Query: 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288
           PD F Y++LI  +         +G    ALEL              C P+ + Y S++  
Sbjct: 360 PDNFTYSALINAF-------SEQGCVEDALELLRSMP---------CSPNTVCYKSVLKG 403

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           LC+D   +   +L  +M      PD +V+  +ID  C  G +D   ++   + + GC PD
Sbjct: 404 LCRDGQWEDVGQLIGEMVRNDCAPDEMVFGLIIDCLCQRGLVDCGLEVLQEVPNYGCSPD 463

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS---------CILE----AAELFR 395
              Y +L+N +++  +V+++L L+    SM  +P+           C +E    A +L  
Sbjct: 464 VVMYTSLLNGFAEYGRVDDSLKLFK---SMTCKPNTVTYNYVLMGLCKVELWEDAGKLID 520

Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
            +   +   +   F+ L+  LC+   +  A ++F+K+  YG  PNV+ Y+ +  GL  +G
Sbjct: 521 EMVGQECPPNEMTFSILISSLCQKGLVECAIDVFEKMQMYGCTPNVIIYSTLNNGLSEKG 580

Query: 456 GIEKAYDLLPDMEEKI-----RECLKAI----------ELLHKMAKRYVKPDEITVSIL 499
            ++ A  LL +M  K         LK +          EL+ +M ++   PDE+T SI+
Sbjct: 581 CVDNALKLLNNMSCKADTICYSSALKGLCRAELWEDAGELIVEMFRKDCPPDEVTFSII 639



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/420 (24%), Positives = 179/420 (42%), Gaps = 68/420 (16%)

Query: 102 YYVNFICLSERLNTIGLL---PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVV 158
           +++    L   L  +G +   P  V   +L+   C    ++DA      +LR   + D V
Sbjct: 70  HFIRLGDLDAALQLVGSMSEPPAVVPCTLLIKKLCAAGRLADA----EGVLRASEAADAV 125

Query: 159 TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVL 218
               L+ G C  G+  +A  +     A     +   +V+ Y ++I G C+ G +   R+L
Sbjct: 126 DHNTLVAGYCRAGRLADAERMLRSLAA-----SGAADVVTYNTLIAGYCRGGRLEDARLL 180

Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD 278
              M      P+++ YN+L++  C A  W DA+       EL EE    +        PD
Sbjct: 181 VASMPPA---PNSYAYNTLLKGLCSAKQWGDAE-------ELVEEMTRNDSP------PD 224

Query: 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
            L++  +I+S C+  LVD+A  +   M   G  P  +VY+ +I  +  +GR+ +A  LF 
Sbjct: 225 DLTFGMLIHSFCQSGLVDRAMGILDRMSKCGCTPGAIVYNEIISCFAELGRVKEALHLFS 284

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398
            +    C PD  SYN ++    + E+ E+A  L  EM+     PD               
Sbjct: 285 CMP---CKPDIFSYNAVLKGLCRAERWEDAGELITEMVRKDCSPDE-------------- 327

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
                     FN ++  LC    +  A E+  ++P+YG +P+  TY+ +I     +G +E
Sbjct: 328 --------VTFNTVISFLCHKGLVDCALEVVDQMPKYGRKPDNFTYSALINAFSEQGCVE 379

Query: 459 KAYDLLPDME-EKIRECLKAI--------------ELLHKMAKRYVKPDEITVSILEELL 503
            A +LL  M       C K++              +L+ +M +    PDE+   ++ + L
Sbjct: 380 DALELLRSMPCSPNTVCYKSVLKGLCRDGQWEDVGQLIGEMVRNDCAPDEMVFGLIIDCL 439



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 105/412 (25%), Positives = 181/412 (43%), Gaps = 41/412 (9%)

Query: 70  DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
           DA      M+    +P   +FN+++  L  K      + + +++   G  PD  + + L+
Sbjct: 310 DAGELITEMVRKDCSPDEVTFNTVISFLCHKGLVDCALEVVDQMPKYGRKPDNFTYSALI 369

Query: 130 NCFCKMIGVSDAFVALGRILRKV-FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           N F +   V DA      +LR +  SP+ V    +++GLC  G++ +   L  + V  DC
Sbjct: 370 NAFSEQGCVEDAL----ELLRSMPCSPNTVCYKSVLKGLCRDGQWEDVGQLIGEMVRNDC 425

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
                P+ + +  IID LC+ G V+    +  ++   G  PD  +Y SL+       N  
Sbjct: 426 ----APDEMVFGLIIDCLCQRGLVDCGLEVLQEVPNYGCSPDVVMYTSLL-------NGF 474

Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
              G    +L+L +            C P+ ++Y  ++  LCK  L + A +L  +M  +
Sbjct: 475 AEYGRVDDSLKLFKSMT---------CKPNTVTYNYVLMGLCKVELWEDAGKLIDEMVGQ 525

Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368
              P+ + +S LI   C  G ++ A  +F  ++  GC P+   Y+TL N  S+   V+ A
Sbjct: 526 ECPPNEMTFSILISSLCQKGLVECAIDVFEKMQMYGCTPNVIIYSTLNNGLSEKGCVDNA 585

Query: 369 LSLYGEMISMGVRPDNSCILEA------AELFRTLHNTKFEL-------DLTVFNCLVDG 415
           L L   + +M  + D  C   A      AEL+        E+       D   F+ ++  
Sbjct: 586 LKL---LNNMSCKADTICYSSALKGLCRAELWEDAGELIVEMFRKDCPPDEVTFSIIITN 642

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           LC+   +  A E+   + +Y   PN+V Y+ +I G    G +E A  LL  M
Sbjct: 643 LCQQGFVEYATEVSDLMLKYECTPNIVIYSSLINGFSEHGHLEDALKLLRSM 694



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 119/269 (44%), Gaps = 26/269 (9%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G  PD V    L+N F +   V D+      +  K   P+ VT   ++ GLC    + +A
Sbjct: 459 GCSPDVVMYTSLLNGFAEYGRVDDSLKLFKSMTCK---PNTVTYNYVLMGLCKVELWEDA 515

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L  + V  +C PN +     ++ +I  LC+ G V     +F  M+  G  P+  +Y++
Sbjct: 516 GKLIDEMVGQECPPNEMT----FSILISSLCQKGLVECAIDVFEKMQMYGCTPNVIIYST 571

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           L        N    KG    AL+L              C  D + Y S +  LC+  L +
Sbjct: 572 L-------NNGLSEKGCVDNALKLLNNMS---------CKADTICYSSALKGLCRAELWE 615

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A EL ++M  +   PD V +S +I   C  G ++ A ++   +    C P+   Y++LI
Sbjct: 616 DAGELIVEMFRKDCPPDEVTFSIIITNLCQQGFVEYATEVSDLMLKYECTPNIVIYSSLI 675

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNS 385
           N +S+   +E+AL L   + SM   PD S
Sbjct: 676 NGFSEHGHLEDALKL---LRSMPCEPDTS 701



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 118/284 (41%), Gaps = 60/284 (21%)

Query: 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
           D + + +++   C+   +  A+ +   + + G   DVV Y++LI GYC  GR++DAR L 
Sbjct: 123 DAVDHNTLVAGYCRAGRLADAERMLRSLAASGAA-DVVTYNTLIAGYCRGGRLEDARLLV 181

Query: 338 VSI-----------------------ESEGCI---------PDTSSYNTLINSYSKIEKV 365
            S+                       ++E  +         PD  ++  LI+S+ +   V
Sbjct: 182 ASMPPAPNSYAYNTLLKGLCSAKQWGDAEELVEEMTRNDSPPDDLTFGMLIHSFCQSGLV 241

Query: 366 EEALSLYGEMISMGVRPDN-------SCILEAAELFRTLH---NTKFELDLTVFNCLVDG 415
           + A+ +   M   G  P         SC  E   +   LH       + D+  +N ++ G
Sbjct: 242 DRAMGILDRMSKCGCTPGAIVYNEIISCFAELGRVKEALHLFSCMPCKPDIFSYNAVLKG 301

Query: 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL 475
           LC++ R   A EL  ++ R    P+ VT+  +I  LC +G               + +C 
Sbjct: 302 LCRAERWEDAGELITEMVRKDCSPDEVTFNTVISFLCHKG---------------LVDC- 345

Query: 476 KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519
            A+E++ +M K   KPD  T S L    ++     + + LL S 
Sbjct: 346 -ALEVVDQMPKYGRKPDNFTYSALINAFSEQGCVEDALELLRSM 388


>gi|13872949|dbj|BAB44054.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 909

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/412 (25%), Positives = 191/412 (46%), Gaps = 47/412 (11%)

Query: 116 IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
           +G +P   + + +++   K   V +AF    ++      P+V     LI  LC   +F +
Sbjct: 320 LGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDD 379

Query: 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
           A  LF +         + PN + YA +I  LCK G +     LF  M+ +GI    + YN
Sbjct: 380 ADRLFKEMAG----RGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYN 435

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           SLI  YC   + + A+G            ++G  + G+   P   SY  +I  LC++  +
Sbjct: 436 SLINGYCKQGSLDRARG-----------LLSGMVKEGLT--PTAASYSPLIAGLCRNGDL 482

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
               EL  +M  RGI  +   +++LI+G+C   ++D+A +LF  +     IP+  ++N +
Sbjct: 483 SSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVM 542

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKF 402
           I  Y  +  + +A  LY +M+ MG++PDN             S + +A E    L N+  
Sbjct: 543 IEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYA 602

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
            L+      L+ G  +  R    + L+ ++   G + ++V++T+++            Y 
Sbjct: 603 VLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIV------------YA 650

Query: 463 LLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMN 514
            L    +K + C+    L  +M ++ VKPD+I  + + + L+K+EN  + +N
Sbjct: 651 ALKQ-HDKEKSCV----LFREMKEQGVKPDDIFYTCMIDALSKEENMIQALN 697



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 170/370 (45%), Gaps = 30/370 (8%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           R+ + G+    V  N+LM   CK + V +A      ++    + D VT   L+ G C   
Sbjct: 246 RMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRME 305

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
           +   A  +    +    R   +P+    + +ID L K   V +   L   +   G+ P+ 
Sbjct: 306 ELEMALRITHDMI----RLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNV 361

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
           F YN+LI   C    ++DA         L +E   G G       P+ ++Y  +I++LCK
Sbjct: 362 FAYNALIDKLCKNERFDDAD-------RLFKEMA-GRG-----LEPNEVTYAILIHALCK 408

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
             +++ A  LF  M+ +GI   V  Y+SLI+GYC  G +D AR L   +  EG  P  +S
Sbjct: 409 RGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAAS 468

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL-------------EAAELFRTLH 398
           Y+ LI    +   +   + L+ EM   G+  +N                 EAA LF  + 
Sbjct: 469 YSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMI 528

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
           ++    +   FN +++G C    +R A++L+ ++   G +P+  TY  +I GLC+  G+ 
Sbjct: 529 DSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVS 588

Query: 459 KAYDLLPDME 468
           KA + + D+E
Sbjct: 589 KANEFVADLE 598



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 116/440 (26%), Positives = 188/440 (42%), Gaps = 40/440 (9%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G +E  DALC F+ M        +  +NSL+     +        L   +   GL P 
Sbjct: 408 KRGMIE--DALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPT 465

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             S + L+   C+   +S        +  +  + +  T   LI G C   K  EA+ LF 
Sbjct: 466 AASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFD 525

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           K +      NVIPN + +  +I+G C  G + K   L+  M   G+ PD + Y SLI   
Sbjct: 526 KMI----DSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGL 581

Query: 242 CCAVNWEDAK-------------GNTSAALELHEEFVNGN--------GELGVI-CHPDV 279
           C       A               N S    L+  F  G          E+ V     D+
Sbjct: 582 CLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDL 641

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           +S+  I+ +  K    +K+  LF +MK +G+ PD + Y+ +ID       +  A   +  
Sbjct: 642 VSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQ 701

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---SCILEA------ 390
           +  +G  P+T ++  LIN+  K   +  A  L  EM++  V P+    +C L+       
Sbjct: 702 MVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGD 761

Query: 391 AELFRTLHNTKFELDLTV---FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
            E  + LH+   +  L     FN L+ GLCK+ +++ A +L  K+   G  P+ ++Y+ +
Sbjct: 762 MEKAKDLHSAMLQGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTI 821

Query: 448 ICGLCIEGGIEKAYDLLPDM 467
           I  LC  G I KA++L  +M
Sbjct: 822 IHELCKMGDINKAFELWNEM 841



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 122/256 (47%), Gaps = 35/256 (13%)

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
            R LF  M   G++ D +VY + IR YC + N + A+G     + +  E V  +      
Sbjct: 205 ARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARG---LVVRMESEGVKASA----- 256

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
                + Y  ++  LCK++ V +A E+   M + G+  D V Y +L+ G+C M  ++ A 
Sbjct: 257 -----VPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMAL 311

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
           ++   +   G +P  ++ + +I+   K E VEEA SL  ++  +G+ P            
Sbjct: 312 RITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVP------------ 359

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
                     ++  +N L+D LCK+ R   A  LFK++   G EPN VTY ++I  LC  
Sbjct: 360 ----------NVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKR 409

Query: 455 GGIEKAYDLLPDMEEK 470
           G IE A  L   M +K
Sbjct: 410 GMIEDALCLFDKMRDK 425



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 175/402 (43%), Gaps = 42/402 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++++A   F+ MI     P   +FN ++              L +++  +GL PD  +  
Sbjct: 516 KMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYR 575

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++  C   GVS A   +  +       +  +L  L+ G   +G+FTE   L+ +    
Sbjct: 576 SLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVR 635

Query: 187 DCRPNVIP-NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
             + +++   +I YA++     K     K  VLF +MK +G+ PD   Y        C +
Sbjct: 636 GVKLDLVSFTIIVYAAL-----KQHDKEKSCVLFREMKEQGVKPDDIFYT-------CMI 683

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
           +    + N   AL   ++ V           P+ +++  +IN+LCK   +  A+ L  +M
Sbjct: 684 DALSKEENMIQALNCWDQMVVDG------YSPNTVTHTVLINNLCKSGYLGSAELLCKEM 737

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
            +  ++P+   Y+  +D +   G ++ A+ L  ++  +G +    S+N LI    K  K+
Sbjct: 738 LAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAM-LQGHLASIVSFNILIKGLCKAGKI 796

Query: 366 EEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
           +EA+ L  ++   G  PD  CI                     ++ ++  LCK   +  A
Sbjct: 797 QEAIDLMSKITESGFSPD--CI--------------------SYSTIIHELCKMGDINKA 834

Query: 426 WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +EL+ ++   G +P+VV Y + I    + G  +KA  +  +M
Sbjct: 835 FELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNM 876



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 130/295 (44%), Gaps = 18/295 (6%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           S  +LL     +  +     L + +   G+  D VS  I++    K      + V    +
Sbjct: 608 SLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREM 667

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
             +   PD +   C+I  L  +    +A   + + V     PN + + +    +I+ LCK
Sbjct: 668 KEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTV----LINNLCK 723

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
            G++    +L  +M    + P+ F YN       C +++   +G+   A +LH   + G+
Sbjct: 724 SGYLGSAELLCKEMLAGNVLPNKFTYN-------CFLDYFATEGDMEKAKDLHSAMLQGH 776

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                     ++S+  +I  LCK   + +A +L   +   G  PD + YS++I   C MG
Sbjct: 777 -------LASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMG 829

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            I+ A +L+  +  +G  PD  +YN  I   +   + ++AL +Y  MI  GV+P+
Sbjct: 830 DINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPN 884



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 4/118 (3%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           SFN L+  L         I L  ++   G  PD +S + +++  CKM  ++ AF     +
Sbjct: 782 SFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEM 841

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGL 206
           L K   PDVV     IR   + G+  +A G++T  +    R  V PN   Y +++ G+
Sbjct: 842 LYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMI----RSGVQPNWDTYRALLSGI 895



 Score = 42.0 bits (97), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 75/209 (35%), Gaps = 39/209 (18%)

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           S GI  +    S ++     + +   AR LF  +   G   D   Y   I +Y +   ++
Sbjct: 179 SSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLD 238

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
            A  L   M S GV+                           +N L+ GLCK+ R++ A 
Sbjct: 239 GARGLVVRMESEGVKASA----------------------VPYNVLMYGLCKNMRVQEAV 276

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAK 486
           E+   +   G   + VTY  ++ G C                 ++ E   A+ + H M +
Sbjct: 277 EVKNVMVNIGVTADEVTYRTLVYGFC-----------------RMEELEMALRITHDMIR 319

Query: 487 RYVKPDEITVSILEELLNKDENCHECMNL 515
               P E   S + + L K E   E  +L
Sbjct: 320 LGFVPSEANCSFMIDELRKKELVEEAFSL 348


>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
 gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
          Length = 595

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 179/399 (44%), Gaps = 62/399 (15%)

Query: 109 LSERLNTIGLLPDF---VSLNILMNCFCKMIG-----VSDAFVALGRILRKVFSPDVVTL 160
           ++E  + +  LPD    VS N ++   C+  G          V + R       P+ V+ 
Sbjct: 67  VTEACSLLSALPDVRDAVSYNTVLAALCRRGGDHLRQARSLLVDMSREAHPAARPNAVSY 126

Query: 161 GCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFL 220
             ++RGLC   +  EA  L     A   R     +V+ Y ++I GLC    ++    L  
Sbjct: 127 TTVMRGLCASRRTGEAVALLRSMQASGVR----ADVVTYGTLIRGLCDASELDAALELLD 182

Query: 221 DMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVL 280
           +M G G+ P+  VY+ L+R YC +  W+D         ++ E+        G+   PDV+
Sbjct: 183 EMCGSGVQPNVVVYSCLLRGYCRSGRWQDVG-------KVFEDM----SRRGI--KPDVI 229

Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
            +  +I+ LCK+    KA ++   M  RG+ P+VV Y+ LI+  C  G + +A  L   +
Sbjct: 230 MFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEM 289

Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNT 400
           + +G  PD  +YNTLI   S + +++EA+S   EMI                      +T
Sbjct: 290 DDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQ--------------------GDT 329

Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
             E D+  FN ++ GLCK  R+  A ++ + +   G   N+VTY  +I G          
Sbjct: 330 VVEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFL-------- 381

Query: 461 YDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                    ++ +   A+ L+ ++A   ++PD  T SIL
Sbjct: 382 ---------RVHKVKMAMNLMDELAISGLEPDSFTYSIL 411



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/461 (23%), Positives = 195/461 (42%), Gaps = 58/461 (12%)

Query: 80  HMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVS 139
           H    P   S+ +++  L   +     + L   +   G+  D V+   L+   C    + 
Sbjct: 116 HPAARPNAVSYTTVMRGLCASRRTGEAVALLRSMQASGVRADVVTYGTLIRGLCDASELD 175

Query: 140 DAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICY 199
            A   L  +      P+VV   CL+RG C  G++ +   +F        R  + P+VI +
Sbjct: 176 AALELLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDM----SRRGIKPDVIMF 231

Query: 200 ASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE 259
             +ID LCK+G   K   +   M  RG+ P+   YN LI   C        +G+   AL 
Sbjct: 232 TGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLC-------KEGSVREALT 284

Query: 260 LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII--PDVVVY 317
           L +E      + GV   PDV++Y ++I  L   + +D+A     +M     +  PDVV +
Sbjct: 285 LRKEM----DDKGV--APDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQGDTVVEPDVVTF 338

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           +S+I G C +GR+  A K+   +   GC+ +  +YN LI  + ++ KV+ A++L  E+  
Sbjct: 339 NSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDELAI 398

Query: 378 MGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
            G+ PD+                        ++ L++G  K W +  A +    + + G 
Sbjct: 399 SGLEPDS----------------------FTYSILINGFSKMWEVDRAEKFLCTMRQRGI 436

Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE-----------------KIRECLKAIEL 480
           +  +  Y  ++  +C +G +E+A  L  +M++                 K  +     +L
Sbjct: 437 KAELFHYIPLLAAMCQQGMMERAMGLFNEMDKNCGLDAIAYSTMIHGACKSGDMKTVKQL 496

Query: 481 LHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
           +  M    + PD +T S+L  +  K  +  E   +L    +
Sbjct: 497 IQDMLDEGLAPDAVTYSMLINMYAKLGDLEEAERVLKQMTA 537



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 157/370 (42%), Gaps = 52/370 (14%)

Query: 51  TKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLS 110
           T L+  L +  K+G+     A    + M+     P + ++N L+ +L  +      + L 
Sbjct: 232 TGLIDDLCKEGKTGK-----AAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTLR 286

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILR--KVFSPDVVTLGCLIRGLC 168
           + ++  G+ PD V+ N L+     ++ + +A   L  +++   V  PDVVT   +I GLC
Sbjct: 287 KEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQGDTVVEPDVVTFNSVIHGLC 346

Query: 169 MQGKFTEASGLFTKFVAFDCRPNVI-------------------------------PNVI 197
             G+ T+A  +        C  N++                               P+  
Sbjct: 347 KIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDELAISGLEPDSF 406

Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
            Y+ +I+G  K   V++       M+ RGI  + F Y  L+   C        +G    A
Sbjct: 407 TYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLAAMC-------QQGMMERA 459

Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
           + L  E           C  D ++Y ++I+  CK   +   K+L  DM   G+ PD V Y
Sbjct: 460 MGLFNEMDKN-------CGLDAIAYSTMIHGACKSGDMKTVKQLIQDMLDEGLAPDAVTY 512

Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
           S LI+ Y  +G +++A ++   + + G +PD + +++LI  YS   + ++ L L  EM +
Sbjct: 513 SMLINMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLIKGYSAEGQTDKVLKLIHEMRA 572

Query: 378 MGVRPDNSCI 387
             V  D   I
Sbjct: 573 KNVAFDPKII 582


>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
          Length = 839

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 111/461 (24%), Positives = 198/461 (42%), Gaps = 45/461 (9%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           E+++A      M+     P   S+N+LL     + +      L +++   G+ P  ++ N
Sbjct: 348 EIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYN 407

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L+   C++    DA      ++++  +PD V    L+ GL     F  AS L+   +A 
Sbjct: 408 TLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILA- 466

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
                   + I + ++I GLCK G + +   +F  MK  G  PD   Y +LI  YC A N
Sbjct: 467 ---RGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASN 523

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
              A      A+E                 P +  Y S+I+ L K   + +  +L  +M 
Sbjct: 524 VGQAF-KVKGAMEREP------------ISPSIEMYNSLISGLFKSRRLVEVTDLLTEMG 570

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            RG+ P++V Y +LIDG+C  G +D A   +  +   G   +    +T+++   ++ +++
Sbjct: 571 IRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRID 630

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLT----------VFNCLVDGL 416
           EA  L  +M+  G  PD+ C L++   +  +      LD +          V+N  + GL
Sbjct: 631 EANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGL 690

Query: 417 CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------- 469
           CK+ ++  A   F  L   G  P+  TY  +I G    G +++A+ L  +M         
Sbjct: 691 CKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNI 750

Query: 470 -----------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
                      K     +A  L HK+ ++ + P+ +T + L
Sbjct: 751 VTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTL 791



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 174/382 (45%), Gaps = 42/382 (10%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           +FN+++  L      V    + +++  +G  PD ++   L++ +CK   V  AF   G +
Sbjct: 475 TFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAM 534

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
            R+  SP +     LI GL    +  E + L T+         + PN++ Y ++IDG CK
Sbjct: 535 EREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGI----RGLTPNIVTYGALIDGWCK 590

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
           +G ++K    + +M   G+  +  + +++       V+     G    A  L ++ V+  
Sbjct: 591 EGMLDKAFSSYFEMTENGLSANIIICSTM-------VSGLYRLGRIDEANLLMQKMVD-- 641

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                  H     +   + S  +   + K  +   +     ++P+ +VY+  I G C  G
Sbjct: 642 -------HGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTG 694

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL 388
           ++DDAR+ F  +  +G +PD  +Y TLI+ YS    V+EA  L  EM+  G+ P+     
Sbjct: 695 KVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPN----- 749

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
                            +  +N L++GLCKS  +  A  LF KL + G  PNVVTY  +I
Sbjct: 750 -----------------IVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLI 792

Query: 449 CGLCIEGGIEKAYDLLPDMEEK 470
            G C  G ++ A+ L   M E+
Sbjct: 793 DGYCKIGNMDAAFKLKDKMIEE 814



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/352 (28%), Positives = 171/352 (48%), Gaps = 44/352 (12%)

Query: 193 IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252
           IP++    S+++ L K+G  +    ++  M   GI PD F+ + ++  +C     +D K 
Sbjct: 154 IPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFC-----KDGKV 208

Query: 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
           + +A       FV     LGV   P++++Y S+IN       V+ AK +   M  +G+  
Sbjct: 209 DEAAG------FVKKMENLGV--EPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSR 260

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC-IPDTSSYNTLINSYSKIEKVEEALSL 371
           +VV Y+ LI GYC   ++D+A K+   ++ E   +PD  +Y  LI+ Y +  K+++A+ L
Sbjct: 261 NVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRL 320

Query: 372 YGEMISMGVRPD----NSCI---------LEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418
             EM+ +G++ +    NS I          EA  +   + +   + D   +N L+DG C+
Sbjct: 321 LDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCR 380

Query: 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAI 478
                 A+ L  K+ + G EP V+TY  ++ GLC  G    A+D              A+
Sbjct: 381 EGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVG----AFD-------------DAL 423

Query: 479 ELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKLT 530
           ++ H M KR V PDE+  S L + L K EN      L    L+R   +S++T
Sbjct: 424 QIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRIT 475



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 113/481 (23%), Positives = 195/481 (40%), Gaps = 83/481 (17%)

Query: 86  FMPS-FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           F P+ F+ +L     K    N + + + +   G +P   S N L+N   K      A   
Sbjct: 120 FSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYV 179

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
             +++R    PDV  +  ++   C  GK  EA+G   K         V PN++ Y S+I+
Sbjct: 180 YQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENL----GVEPNIVTYHSLIN 235

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           G    G V   + +   M  +G+  +   Y  LI+ YC     ++A           E+ 
Sbjct: 236 GYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEA-----------EKV 284

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
           + G  E   +  PD  +Y  +I+  C+   +D A  L  +M   G+  ++ + +SLI+GY
Sbjct: 285 LRGMQEEAALV-PDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGY 343

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY------------------------- 359
           C  G I +A  +   +      PD+ SYNTL++ Y                         
Sbjct: 344 CKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTV 403

Query: 360 ----------SKIEKVEEALSLYGEMISMGVRPDN---SCILE----------AAELFRT 396
                      ++   ++AL ++  M+  GV PD    S +L+          A+ L++ 
Sbjct: 404 LTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKD 463

Query: 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGG 456
           +    F      FN ++ GLCK  ++  A E+F K+   G  P+ +TY  +I G C    
Sbjct: 464 ILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASN 523

Query: 457 IEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSI 498
           + +A+ +   ME                   K R  ++  +LL +M  R + P+ +T   
Sbjct: 524 VGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGA 583

Query: 499 L 499
           L
Sbjct: 584 L 584



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 104/227 (45%), Gaps = 32/227 (14%)

Query: 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDM------KSRG-IIPDVVV------------ 316
            P+V SYC +++ L +  + D+ +     +      K RG +I D +V            
Sbjct: 65  RPNVKSYCKLVHILSRGRMYDETRAYLNQLVDLCKFKDRGNVIWDELVGVYREFAFSPTV 124

Query: 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
           +  ++  Y   G   +A  +F ++   G IP   S N+L+N+  K  +   A  +Y +MI
Sbjct: 125 FDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMI 184

Query: 377 SMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLR 423
            +G+ PD             +  + EAA   + + N   E ++  ++ L++G      + 
Sbjct: 185 RVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVE 244

Query: 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
           +A  + K +   G   NVVTYT++I G C +  +++A  +L  M+E+
Sbjct: 245 AAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEE 291


>gi|222637660|gb|EEE67792.1| hypothetical protein OsJ_25528 [Oryza sativa Japonica Group]
          Length = 475

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 160/341 (46%), Gaps = 43/341 (12%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253
           P V  Y  ++DGL     + KV  +F +MK + +  D + Y+S+I  YC A       GN
Sbjct: 135 PTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRA-------GN 187

Query: 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313
              A E+ +E V GNG       P+  +Y ++IN  CK   ++ A+ L  DM+ RG+  +
Sbjct: 188 VRRASEVFDECV-GNG-----IEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGIN 241

Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
            +V++++IDGYC    +D A ++ + +E  G   D  +YNTL     +  +++EA +L  
Sbjct: 242 QIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLR 301

Query: 374 EMISMGVRPDNSC-------------ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
            MI  GVRP++               ++EA  LFR +     E  L  +N ++DG  K  
Sbjct: 302 IMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKG 361

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIEL 480
            +R A     ++ + G  P++ +Y  ++ G C+ G ++                  A+ L
Sbjct: 362 SIREAERFKNEMEKKGLVPDIYSYAALVHGHCVNGKVD-----------------VALRL 404

Query: 481 LHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
             +M +R  KP+ +  + L   L K+    E   L  + L 
Sbjct: 405 FEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQLYDNMLG 445



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 151/345 (43%), Gaps = 41/345 (11%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + ++  L+  L+  +       + E + +  L  D    + ++N +C+   V  A   
Sbjct: 135 PTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEV 194

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
               +     P+  T G LI G C  G+   A  L T          V  N I + ++ID
Sbjct: 195 FDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQV----RGVGINQIVFNTMID 250

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL----------------IRV-------- 240
           G C+   V+K   + + M+  GI  D + YN+L                +R+        
Sbjct: 251 GYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRP 310

Query: 241 ----YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
               Y   ++    +G+   A  L  E   GNG       P +++Y  +++   K   + 
Sbjct: 311 NHVSYTTLISIHCNEGDMVEARRLFREMA-GNG-----AEPSLVTYNVMMDGYIKKGSIR 364

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A+    +M+ +G++PD+  Y++L+ G+C+ G++D A +LF  ++  G  P+  +Y  LI
Sbjct: 365 EAERFKNEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALI 424

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK 401
           +  +K  + EEA  LY  M+  G+ PD++     + L  +LH  K
Sbjct: 425 SGLAKEGRSEEAFQLYDNMLGDGLTPDDALY---SALVGSLHTDK 466



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 126/313 (40%), Gaps = 64/313 (20%)

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G    A+ L  K  A  C  +V P  +  + ++DG CK G V   R L  +M   G+  +
Sbjct: 45  GHLDTAADLL-KQAATSCPDSVTP--LSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVN 101

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
           A                                                L Y S++++  
Sbjct: 102 A------------------------------------------------LCYNSLLDAYT 113

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
           ++   D+  E+   M++ GI P V  Y+ L+DG      I     +F  ++S+    D  
Sbjct: 114 REKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVY 173

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCI------------LEAAELFRT-L 397
            Y+++IN+Y +   V  A  ++ E +  G+ P+                +EAAE+  T +
Sbjct: 174 FYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDM 233

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                 ++  VFN ++DG C+   +  A E+   + + G E +V TY  + CGL     +
Sbjct: 234 QVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRM 293

Query: 458 EKAYDLLPDMEEK 470
           ++A +LL  M EK
Sbjct: 294 DEAKNLLRIMIEK 306


>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
 gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
          Length = 802

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 119/440 (27%), Positives = 203/440 (46%), Gaps = 51/440 (11%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G +E   A  +F+ M  +  +  + ++ +LL A    K       +  R+   G  P+
Sbjct: 335 KAGLIE--QARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPN 392

Query: 122 FVSLNILMNCFCK-------------MIGVSDA----FVALGRILRKVFSPDVVTLGCLI 164
            ++ + L++  CK             +IG SD     F   G+    + +P+VVT G LI
Sbjct: 393 TITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSI-APNVVTYGALI 451

Query: 165 RGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224
            GLC   K  +A  L    ++  C PN I     Y ++IDG CK G ++  + +FL M  
Sbjct: 452 DGLCKAHKVVDAQELLDAMLSNGCEPNHI----IYDALIDGFCKVGKIDNAQEVFLRMSK 507

Query: 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCS 284
            G  P    Y SLI        ++D +     A+++  + V  +      C P+V++Y +
Sbjct: 508 CGYLPTVHTYTSLIDAM-----FKDRR--LDLAMKVLSQMVESS------CTPNVVTYTA 554

Query: 285 IINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           +I+ LC+     KA +L   M+ +G  P+VV Y++LIDG    G++D + +LF+ + ++G
Sbjct: 555 MIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKG 614

Query: 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG-----------VRPDNSCILEAAEL 393
           C P+  +Y  LIN       ++EA SL  EM               V+  +   + +  L
Sbjct: 615 CAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGFSKKFIASLGL 674

Query: 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT---YTVMICG 450
              L +        V+  L+D   K+ RL  A EL K++       N+ +   YT +I  
Sbjct: 675 LEELESHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMMELSSSLNITSKDMYTSLIQA 734

Query: 451 LCIEGGIEKAYDLLPDMEEK 470
           LC+   +EKA++L  ++  K
Sbjct: 735 LCLASQLEKAFELYSEITRK 754



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 157/356 (44%), Gaps = 55/356 (15%)

Query: 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190
           C C M     AF  +  ++ K F PD  T   +I  LC   K  +A  LF +  +     
Sbjct: 262 CLCGMGKFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSV---- 317

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
            V P+V  Y  +ID  CK G + + R  F +M+  G   +   Y +L+  Y  A     A
Sbjct: 318 GVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQA 377

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM----- 305
                   ++    ++        C P+ ++Y ++++ LCK   + KA E++  +     
Sbjct: 378 S-------DIFNRMIDAG------CPPNTITYSALVDGLCKAGEIQKACEVYTKLIGTSD 424

Query: 306 -----------KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354
                       +  I P+VV Y +LIDG C   ++ DA++L  ++ S GC P+   Y+ 
Sbjct: 425 NVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDA 484

Query: 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414
           LI+ + K+ K++ A  ++  M   G  P             T+H          +  L+D
Sbjct: 485 LIDGFCKVGKIDNAQEVFLRMSKCGYLP-------------TVHT---------YTSLID 522

Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            + K  RL  A ++  ++      PNVVTYT MI GLC  G  +KA  LL  MEEK
Sbjct: 523 AMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEK 578



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 166/364 (45%), Gaps = 43/364 (11%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G +PD  + + ++   C+ + V  AF+    +     +PDV T   LI   C  G   +A
Sbjct: 283 GFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQA 342

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
              F +  +  C  NV+     Y +++    K   + +   +F  M   G  P+   Y++
Sbjct: 343 RSWFDEMRSIGCSANVVT----YTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSA 398

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH----------PDVLSYCSII 286
           L+   C A       G    A E++ + +  +  +G   +          P+V++Y ++I
Sbjct: 399 LVDGLCKA-------GEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALI 451

Query: 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346
           + LCK   V  A+EL   M S G  P+ ++Y +LIDG+C +G+ID+A+++F+ +   G +
Sbjct: 452 DGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYL 511

Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406
           P   +Y +LI++  K  +++ A+ +  +M+     P+                      +
Sbjct: 512 PTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPN----------------------V 549

Query: 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466
             +  ++DGLC+    + A +L   +   G  PNVVTYT +I GL   G ++ +  L   
Sbjct: 550 VTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQ 609

Query: 467 MEEK 470
           M  K
Sbjct: 610 MSTK 613



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 111/452 (24%), Positives = 196/452 (43%), Gaps = 72/452 (15%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142
           P P +  FNSL+ +    + Y     L +R+   G  P +V+ NI +   C         
Sbjct: 175 PNPSL--FNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYVAYNIFIGSICGG------- 225

Query: 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202
                   ++ SPD++ L               A  ++ + +A  C    + N +  A+ 
Sbjct: 226 -------EELPSPDLLAL---------------AEKVYEEMLASSC----VLNKVNTANF 259

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
              LC  G  +    +   M G+G  PD   Y+ +I   C A+  E A         L +
Sbjct: 260 ARCLCGMGKFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKA-------FLLFQ 312

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
           E  +    +GV  +PDV +Y  +I+S CK  L+++A+  F +M+S G   +VV Y++L+ 
Sbjct: 313 EMKS----VGV--NPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLH 366

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
            Y    ++  A  +F  +   GC P+T +Y+ L++   K  ++++A  +Y ++I      
Sbjct: 367 AYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQKACEVYTKLIG---TS 423

Query: 383 DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
           DN   + +   F   H      ++  +  L+DGLCK+ ++  A EL   +   G EPN +
Sbjct: 424 DN---VGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHI 480

Query: 443 TYTVMICGLCIEGGIEKA------------------YDLLPDMEEKIRECLKAIELLHKM 484
            Y  +I G C  G I+ A                  Y  L D   K R    A+++L +M
Sbjct: 481 IYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQM 540

Query: 485 AKRYVKPDEITVSILEELLNKDENCHECMNLL 516
            +    P+ +T + + + L +   C + + LL
Sbjct: 541 VESSCTPNVVTYTAMIDGLCRIGECQKALKLL 572



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 106/436 (24%), Positives = 187/436 (42%), Gaps = 49/436 (11%)

Query: 44  VSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYY 103
            +T   ++ L +  S +S + + EL D    F Y       P   ++N+L+  LA     
Sbjct: 7   AATAALRSSLRRACSSSSHTADPELKD----FGY------RPSGATYNALVQVLATAGQM 56

Query: 104 VNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCL 163
                + + ++  G   D  ++       CK    SDA V    I R+ F  D V    +
Sbjct: 57  DMGFRVQKEMSESGFCMDKFTVGCFAQALCKEGRWSDALVM---IEREDFKLDTVLCTQM 113

Query: 164 IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
           I GL     F EA     +     C    IPNV+ Y +++ G  K   +   + +   M 
Sbjct: 114 ISGLMEASLFDEAISFLHRMRCNSC----IPNVVTYRTLLTGFLKKKQLGWCKRIINMMM 169

Query: 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283
             G  P+  ++NSL+  YC A ++  A            + +    + G  C P  ++Y 
Sbjct: 170 KEGCNPNPSLFNSLVHSYCNARDYPYAY-----------KLLKRMADCG--CPPGYVAYN 216

Query: 284 SIINSLCKDV------LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
             I S+C         L+  A++++ +M +   + + V  ++     C MG+ D A ++ 
Sbjct: 217 IFIGSICGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDMAFQII 276

Query: 338 VSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------N 384
             +  +G +PDTS+Y+ +I    +  KVE+A  L+ EM S+GV PD              
Sbjct: 277 KVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKA 336

Query: 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTY 444
             I +A   F  + +     ++  +  L+    K+ +L  A ++F ++   G  PN +TY
Sbjct: 337 GLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITY 396

Query: 445 TVMICGLCIEGGIEKA 460
           + ++ GLC  G I+KA
Sbjct: 397 SALVDGLCKAGEIQKA 412



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 130/295 (44%), Gaps = 33/295 (11%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           R++  G LP   +   L++   K   +  A   L +++    +P+VVT   +I GLC  G
Sbjct: 504 RMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIG 563

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
           +  +A  L +      C PNV+     Y ++IDGL K G V+    LF+ M  +G  P+ 
Sbjct: 564 ECQKALKLLSMMEEKGCSPNVVT----YTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNY 619

Query: 232 FVYNSLIRVYCCAVNWEDA-----------------KGNTSAALELHEEFVNGNGEL--- 271
             Y  LI  +CCA    D                  +G  S      ++F+   G L   
Sbjct: 620 VTYRVLIN-HCCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGFSKKFIASLGLLEEL 678

Query: 272 ---GVICHPDVLSYCSIINSLCKDVLVDKAKEL---FLDMKSRGIIPDVVVYSSLIDGYC 325
              G +  P    Y  +I++  K   +++A EL    +++ S   I    +Y+SLI   C
Sbjct: 679 ESHGTV--PIAPVYGLLIDNFSKAGRLEEALELHKEMMELSSSLNITSKDMYTSLIQALC 736

Query: 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
           L  +++ A +L+  I  +G +P+ S +  LI    K+ K  EAL L   +   GV
Sbjct: 737 LASQLEKAFELYSEITRKGVVPELSVFVCLIKGLIKVNKWNEALQLCYSICDEGV 791



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 130/290 (44%), Gaps = 41/290 (14%)

Query: 85  PFMPSFNSLLGAL-AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           P + ++ SL+ A+   ++  +    LS+ + +    P+ V+   +++  C++     A  
Sbjct: 512 PTVHTYTSLIDAMFKDRRLDLAMKVLSQMVES-SCTPNVVTYTAMIDGLCRIGECQKALK 570

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN-----VIPNVIC 198
            L  +  K  SP+VVT   LI GL   GK   +  LF +     C PN     V+ N  C
Sbjct: 571 LLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCC 630

Query: 199 YASIID-------------------GLCK--DGFVNKVRV---LFLDMKGRGIYPDAFVY 234
            A ++D                   G C    GF  K      L  +++  G  P A VY
Sbjct: 631 AAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGFSKKFIASLGLLEELESHGTVPIAPVY 690

Query: 235 NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294
             LI       N+  A G    ALELH+E +  +  L  I   D+  Y S+I +LC    
Sbjct: 691 GLLID------NFSKA-GRLEEALELHKEMMELSSSLN-ITSKDM--YTSLIQALCLASQ 740

Query: 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344
           ++KA EL+ ++  +G++P++ V+  LI G   + + ++A +L  SI  EG
Sbjct: 741 LEKAFELYSEITRKGVVPELSVFVCLIKGLIKVNKWNEALQLCYSICDEG 790



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 115/274 (41%), Gaps = 49/274 (17%)

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
           C P+V++Y +++    K   +   K +   M   G  P+  +++SL+  YC       A 
Sbjct: 138 CIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAY 197

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE------ALSLYGEMISMGVRPDNSCIL 388
           KL   +   GC P   +YN  I S    E++        A  +Y EM++      +SC+L
Sbjct: 198 KLLKRMADCGCPPGYVAYNIFIGSICGGEELPSPDLLALAEKVYEEMLA------SSCVL 251

Query: 389 E-------------------AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
                               A ++ + +    F  D + ++ ++  LC++ ++  A+ LF
Sbjct: 252 NKVNTANFARCLCGMGKFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLF 311

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KI 471
           +++   G  P+V TYT++I   C  G IE+A     +M                    K 
Sbjct: 312 QEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKA 371

Query: 472 RECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505
           ++  +A ++ ++M      P+ IT S L + L K
Sbjct: 372 KQLPQASDIFNRMIDAGCPPNTITYSALVDGLCK 405


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 121/478 (25%), Positives = 212/478 (44%), Gaps = 65/478 (13%)

Query: 71  ALCFFNYMIH----MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
            L F++Y+++    M  +P   SFN ++ AL   ++    I +   +     LPD  +  
Sbjct: 167 GLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYC 226

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            LM+  CK   + +A + L  +  +  SP  V    LI GLC +G  T  + L       
Sbjct: 227 TLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLK 286

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C    +PN + Y ++I GLC  G ++K   L   M      P+   Y +LI       N
Sbjct: 287 GC----VPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLI-------N 335

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
               +   + A+ L    ++   E G   H +   Y  +I+ L K+   ++A  L+  M 
Sbjct: 336 GLVKQRRATDAVRL----LSSMEERGY--HLNQHIYSVLISGLFKEGKAEEAMSLWRKMA 389

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
            +G  P++VVYS L+DG C  G+ ++A+++   + + GC+P+  +Y++L+  + K    E
Sbjct: 390 EKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCE 449

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           EA+ ++ EM   G   +  C                      ++ L+DGLC   R++ A 
Sbjct: 450 EAVQVWKEMDKTGCSRNKFC----------------------YSVLIDGLCGVGRVKEAM 487

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA---------------------YDLLP 465
            ++ K+   G +P+ V Y+ +I GLC  G ++ A                     Y++L 
Sbjct: 488 MVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILL 547

Query: 466 DMEEKIRECLKAIELLHKMAKRYVKPDEITV-SILEELLNKDENCHECMNLLPSFLSR 522
           D     ++  +A++LL+ M  R   PD IT  + L  L  K  +C +  + L   + R
Sbjct: 548 DGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKGRSFLEELVVR 605



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 136/298 (45%), Gaps = 35/298 (11%)

Query: 170 QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYP 229
           +G +      +   V  +   N+ PN + +  +I  LCK  FV++   +F  M  R   P
Sbjct: 161 EGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLP 220

Query: 230 DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSL 289
           D + Y +L+   C     ++      A L L E    G       C P  + Y  +I+ L
Sbjct: 221 DGYTYCTLMDGLCKEERIDE------AVLLLDEMQSEG-------CSPSPVIYNVLIDGL 267

Query: 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
           CK   + +  +L  +M  +G +P+ V Y++LI G CL G++D A  L   + S  CIP+ 
Sbjct: 268 CKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPND 327

Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVF 409
            +Y TLIN   K  +  +A+ L   M   G                      + L+  ++
Sbjct: 328 VTYGTLINGLVKQRRATDAVRLLSSMEERG----------------------YHLNQHIY 365

Query: 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           + L+ GL K  +   A  L++K+   G +PN+V Y+V++ GLC EG   +A ++L  M
Sbjct: 366 SVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRM 423



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 136/301 (45%), Gaps = 26/301 (8%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           +L+ A+     M+  +  P   ++ +L+  L  ++   + + L   +   G   +    +
Sbjct: 307 KLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYS 366

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +L++   K     +A     ++  K   P++V    L+ GLC +GK  EA  +  + +A 
Sbjct: 367 VLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIAS 426

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
            C    +PN   Y+S++ G  K G   +   ++ +M   G   + F Y+ LI   C    
Sbjct: 427 GC----LPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLC---- 478

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM- 305
                G    A+ +  + +     +G+   PD ++Y SII  LC    +D A +L+ +M 
Sbjct: 479 ---GVGRVKEAMMVWSKMLT----IGI--KPDTVAYSSIIKGLCGIGSMDAALKLYHEML 529

Query: 306 -----KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
                KS+   PDVV Y+ L+DG C+   I  A  L  S+   GC PD  + NT +N+ S
Sbjct: 530 CQEEPKSQ---PDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLS 586

Query: 361 K 361
           +
Sbjct: 587 E 587


>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
 gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
          Length = 741

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 115/448 (25%), Positives = 194/448 (43%), Gaps = 52/448 (11%)

Query: 83  PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142
           P P +   N+LL ALA      +   L+ R+     + +  +   L+N +C    +  A 
Sbjct: 39  PVPPIRCLNTLLMALARHGMLSDMESLAARMP----VRNLHTYTTLINAYCHAGDLPAAK 94

Query: 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202
             L  +LR   +PD       + G C  G F  A  LF       C          YA++
Sbjct: 95  RHLSSLLRAGLAPDSHAYTSFVLGYCRTGLFAHACRLFLLMPQRGCARTPFT----YAAL 150

Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
           + GLC  G V +   +F  M   G  PD+ VY+ ++   C A       G    A+ L  
Sbjct: 151 LQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGA-------GRAGEAVALLT 203

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
           + + G G +     P+V  Y ++I+  C    ++ A ++F  M+S+G +P+V  Y+ LI 
Sbjct: 204 DAM-GKGFV-----PNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLIC 257

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
           G+C  G+++ A  L+  +   G  P+  +Y TLI        +E A  L   M + G+ P
Sbjct: 258 GFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAP 317

Query: 383 DN-SCIL------------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
           +  +C++            EA +   +L     +++  ++  ++D LCKS +   A  L 
Sbjct: 318 NEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLM 377

Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK------------IRECLKA 477
           +K+   G  P+   Y+ +I GLC E  + +A  LL DM E             I + L+ 
Sbjct: 378 QKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPFTILIDKHLRE 437

Query: 478 IE------LLHKMAKRYVKPDEITVSIL 499
                   +  +MA   VKPD +T ++ 
Sbjct: 438 FRSDSPKMISDRMAAAGVKPDVVTYTVF 465



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 116/447 (25%), Positives = 192/447 (42%), Gaps = 61/447 (13%)

Query: 84  TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143
           TPF  ++ +LL  L G       + +   +   G  PD    +I+++  C      +A  
Sbjct: 143 TPF--TYAALLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRAGEAVA 200

Query: 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203
            L   + K F P+V     LI G C  G    A  +F    +  C    +PNV  Y  +I
Sbjct: 201 LLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGC----LPNVRTYTQLI 256

Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL-HE 262
            G CK G V +  VL+  M   G+ P+   Y +LI+  C       ++G+   A  L H 
Sbjct: 257 CGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQC-------SEGHLEHAFRLLHS 309

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
               G         P+  +   +I++LCK   +++A++    +  +GI  + V+Y+S+ID
Sbjct: 310 MEACGLA-------PNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMID 362

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
             C  G+ D A  L   I +EG +PD   Y++LI+   +  K+ EA+SL  +MI  GV+ 
Sbjct: 363 ALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQA 422

Query: 383 DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442
           +                         F  L+D   + +R  S   +  ++   G +P+VV
Sbjct: 423 NA----------------------VPFTILIDKHLREFRSDSPKMISDRMAAAGVKPDVV 460

Query: 443 TYTVMICGLCIEGGIEKAYDLLPDM-EEKIRECL-----------------KAIELLHKM 484
           TYTV I   C +G +E A  ++  M +  +R  L                 +A   L  M
Sbjct: 461 TYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSSLKNM 520

Query: 485 AKRYVKPDEITVSILEELLNKDENCHE 511
                KP++ + ++L  LL K  + H+
Sbjct: 521 IDNGCKPNDESYTVLLGLLLKKNSYHD 547



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 146/349 (41%), Gaps = 57/349 (16%)

Query: 193 IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252
           +P + C  +++  L + G ++ +  L   M  R ++     Y +LI  YC A +   AK 
Sbjct: 40  VPPIRCLNTLLMALARHGMLSDMESLAARMPVRNLH----TYTTLINAYCHAGDLPAAKR 95

Query: 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
           + S+ L             G+   PD  +Y S +   C+  L   A  LFL M  RG   
Sbjct: 96  HLSSLLRA-----------GLA--PDSHAYTSFVLGYCRTGLFAHACRLFLLMPQRGCAR 142

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
               Y++L+ G C  G + +A  +F  +  +GC PD+  Y+ +++      +  EA++L 
Sbjct: 143 TPFTYAALLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRAGEAVALL 202

Query: 373 GEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
            + +  G  P+                      + V+N L+DG C +  L  A ++FK +
Sbjct: 203 TDAMGKGFVPN----------------------VAVYNALIDGYCSTGDLELAIDIFKGM 240

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-------------IRECLK--- 476
              G  PNV TYT +ICG C  G +E+A  L   M E                +C +   
Sbjct: 241 QSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHL 300

Query: 477 --AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523
             A  LLH M    + P+E T  +L + L K     E    L S + + 
Sbjct: 301 EHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKG 349



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 113/491 (23%), Positives = 204/491 (41%), Gaps = 72/491 (14%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           KSG+VE   A+  ++ MI     P + ++ +L+     + +  +   L   +   GL P+
Sbjct: 261 KSGKVE--RAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPN 318

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             +  +L++  CK   + +A   LG +++K    + V    +I  LC  GKF  A  L  
Sbjct: 319 EWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQ 378

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           K +        +P+   Y+S+IDGLC++  + +   L  DM   G+  +A  +  LI  +
Sbjct: 379 KIIT----EGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPFTILIDKH 434

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
                 +  K              +     GV   PDV++Y   I S C+D  ++ A+ +
Sbjct: 435 LREFRSDSPK-----------MISDRMAAAGV--KPDVVTYTVFIRSYCQDGRMEDAESM 481

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI----- 356
            + M   G+ P++  Y++LI GY  +G +  A     ++   GC P+  SY  L+     
Sbjct: 482 MIQMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSSLKNMIDNGCKPNDESYTVLLGLLLK 541

Query: 357 -NSYSKIEKVEEALSLYGEMISMGVRPD----------------NSCIL----------E 389
            NSY  +  V +++SL+ +++ M V  +                  C +          E
Sbjct: 542 KNSYHDL--VADSISLW-KIVDMKVLEELLEEVIKLQCSSASYVYDCFIRCLSKVDRLEE 598

Query: 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449
           A      + +        V+ C+++   +   L+ A      + +    P + +Y  +IC
Sbjct: 599 AKSFLVGMQSANLTPSEDVYTCMIECCYRMKLLKEALRFLDSMVKRNYLPRLESYRFIIC 658

Query: 450 GLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENC 509
            LC EG    A  +  D+                ++K Y + DEI   IL + L +  N 
Sbjct: 659 ALCEEGSFHTAKSIFGDI----------------LSKEYNR-DEIAWKILIDGLLQKGNT 701

Query: 510 HECMNLLPSFL 520
            +C  LL SF+
Sbjct: 702 ADCSRLL-SFM 711



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 62/295 (21%), Positives = 118/295 (40%), Gaps = 38/295 (12%)

Query: 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
           +S+R+   G+ PD V+  + +  +C+   + DA   + +++     P++ T   LI+G  
Sbjct: 446 ISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYA 505

Query: 169 MQGKFTEASGLFTKFVAFDCRPN-----VIPNVICYASIIDGLCKDGF-------VNKVR 216
             G  ++A       +   C+PN     V+  ++   +    L  D         +  + 
Sbjct: 506 NLGLVSQAFSSLKNMIDNGCKPNDESYTVLLGLLLKKNSYHDLVADSISLWKIVDMKVLE 565

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK----GNTSAALELHEE--------- 263
            L  ++        ++VY+  IR        E+AK    G  SA L   E+         
Sbjct: 566 ELLEEVIKLQCSSASYVYDCFIRCLSKVDRLEEAKSFLVGMQSANLTPSEDVYTCMIECC 625

Query: 264 -----------FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
                      F++   +   +  P + SY  II +LC++     AK +F D+ S+    
Sbjct: 626 YRMKLLKEALRFLDSMVKRNYL--PRLESYRFIICALCEEGSFHTAKSIFGDILSKEYNR 683

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
           D + +  LIDG    G   D  +L   +E + C P ++ Y+ L    +   + +E
Sbjct: 684 DEIAWKILIDGLLQKGNTADCSRLLSFMEEQNCRPGSAIYSRLTGEITVTSEAQE 738


>gi|449463822|ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 641

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 157/344 (45%), Gaps = 40/344 (11%)

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
           +LM  F  +  V  A   L  + +    PD    GCL+  LC  G   EA+ LF      
Sbjct: 182 VLMRRFASVRMVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFE----- 236

Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
           D R    PN+  + S++ G C++G + + + + + +K  G  PD  VYN+L+  Y  A  
Sbjct: 237 DMRVRFNPNLRHFTSLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQA-- 294

Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
                G    A +L  E    N      C P+  S+  +I S CK   +D+A  +F +M+
Sbjct: 295 -----GKMRDAFDLLAEMKKVN------CGPNAASFTILIQSFCKTEKMDEAMRIFTEMQ 343

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
             G   DVV Y++LI G+C  G  D A ++   +  +G  P   SY  ++ ++ K E++E
Sbjct: 344 GSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMAHEKKEELE 403

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
           E + L  EM  +G  P                      DL ++N ++  +CK   L+ A 
Sbjct: 404 ECMELIEEMRKIGCVP----------------------DLNIYNTMIRLVCKLGDLKEAV 441

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
            L+ ++   G  P + TY +M+ G   +G + +A D   +M E+
Sbjct: 442 RLWGEMQAGGLNPGLDTYILMVHGFLSQGCLVEACDYFKEMVER 485



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 125/275 (45%), Gaps = 50/275 (18%)

Query: 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGE 270
            V K   +  +M   G  PD +V+  L+   C         G+   A  L E+       
Sbjct: 192 MVKKAVEVLDEMPKYGCEPDEYVFGCLLDALC-------KNGSVKEAASLFED------- 237

Query: 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330
           + V  +P++  + S++   C++  + +AK + + +K  G  PD+VVY++L+ GY   G++
Sbjct: 238 MRVRFNPNLRHFTSLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKM 297

Query: 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEA 390
            DA  L   ++   C P+ +S+  LI S+ K EK++EA+ ++ EM   G           
Sbjct: 298 RDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGC---------- 347

Query: 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450
                       E D+  +  L+ G CK      A+E+   + + G +P+ ++Y      
Sbjct: 348 ------------EADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSY------ 389

Query: 451 LCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMA 485
           LCI    EK        +E++ EC++ IE + K+ 
Sbjct: 390 LCIMMAHEK--------KEELEECMELIEEMRKIG 416



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 137/320 (42%), Gaps = 22/320 (6%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+G V+  +A   F  M  ++  P +  F SLL     +   +    +  ++   G  PD
Sbjct: 224 KNGSVK--EAASLFEDM-RVRFNPNLRHFTSLLYGWCREGKIMEAKHVLVQIKEAGFEPD 280

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
            V  N L+  + +   + DAF  L  + +    P+  +   LI+  C   K  EA  +FT
Sbjct: 281 IVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFT 340

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           +     C      +V+ Y ++I G CK G  +K   +  DM  +G  P           Y
Sbjct: 341 EMQGSGCE----ADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQL-------SY 389

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
            C +   + K      +EL EE         + C PD+  Y ++I  +CK   + +A  L
Sbjct: 390 LCIMMAHEKKEELEECMELIEEMRK------IGCVPDLNIYNTMIRLVCKLGDLKEAVRL 443

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI--PDTSSYNTLINSY 359
           + +M++ G+ P +  Y  ++ G+   G + +A   F  +   G +  P   +   L N+ 
Sbjct: 444 WGEMQAGGLNPGLDTYILMVHGFLSQGCLVEACDYFKEMVERGLLSAPQYGTLKELTNAL 503

Query: 360 SKIEKVEEALSLYGEMISMG 379
            + EK+E A +++  M + G
Sbjct: 504 LRAEKLEMAKNMWSCMTTKG 523



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 114/268 (42%), Gaps = 35/268 (13%)

Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRG---IIPDVVVYSSLIDGYCLMGRIDDARKLFV 338
           Y ++I +L K         L  +M+      + P+V +   L+  +  +  +  A ++  
Sbjct: 144 YKAMIKTLGKMRQFGAVWALIEEMRKENPYMLTPEVFIV--LMRRFASVRMVKKAVEVLD 201

Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEM---ISMGVRPDNSC--------- 386
            +   GC PD   +  L+++  K   V+EA SL+ +M    +  +R   S          
Sbjct: 202 EMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVRFNPNLRHFTSLLYGWCREGK 261

Query: 387 ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTV 446
           I+EA  +   +    FE D+ V+N L+ G  ++ ++R A++L  ++ +    PN  ++T+
Sbjct: 262 IMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTI 321

Query: 447 MICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRY 488
           +I   C    +++A  +  +M+                   K     KA E+L  M ++ 
Sbjct: 322 LIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKG 381

Query: 489 VKPDEITVSILEELLNKDENCHECMNLL 516
             P +++   +     K E   ECM L+
Sbjct: 382 HDPSQLSYLCIMMAHEKKEELEECMELI 409


>gi|255586501|ref|XP_002533891.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526155|gb|EEF28491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 701

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 117/487 (24%), Positives = 205/487 (42%), Gaps = 84/487 (17%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + S+N+LL A      +      S    ++ + P+  + NIL+   CK   +  A   
Sbjct: 114 PGVRSYNTLLNAFVELNEWDRAESFSRYFESMDVSPNLQTYNILIKISCKKQQIEKAISL 173

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           L  +  +   PDV + G LI G+   G    A  +F +         V+ +V CY  +ID
Sbjct: 174 LDWMWSQNLKPDVFSYGTLINGMVKVGDLLGALKVFDEMSV----RGVVADVTCYNMLID 229

Query: 205 GLCKDGFVNKVRVLFLDM-KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263
           G  K G  +K + ++  + K   +YP+   YN +I   C         G    +LE+ E 
Sbjct: 230 GFFKHGDYDKGKEIWERLVKDCSVYPNVVTYNIMINGLCKC-------GRFDESLEIWER 282

Query: 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
                 E       D+ +Y S+I+ LC+   +D A  ++ ++    ++ D V ++++++G
Sbjct: 283 MTKNERE------KDMFTYSSLIHGLCEAGNIDGAVRVYKEIVESSLVVDAVTHNAMLNG 336

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
           +C  G+I ++ +L++ +  E C     SYN LI    +  KVEEA+S++  +   G RP+
Sbjct: 337 FCRAGKIKESFELWMVMGKENC-QTVVSYNILIKGLFENGKVEEAISIWELLCKKGCRPE 395

Query: 384 -------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR--------- 421
                        N  + +A ++F+   +   +LD   ++ +VDGLCK  R         
Sbjct: 396 STTYGVLIHGLCKNGRLNKALKIFKEAEDGPGKLDAYAYSSMVDGLCKEGRMDEAISIVN 455

Query: 422 --------------------------LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
                                     L  A   F+++   G  P +V+Y  +I GLC   
Sbjct: 456 QMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREMECKGCSPTIVSYNTLIKGLCKAE 515

Query: 456 GIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515
              +AY  + +M EK                   KPD IT S+L + L +++     +NL
Sbjct: 516 RFSEAYSFVKEMLEK-----------------EWKPDMITCSLLMDGLCQEKKIEMALNL 558

Query: 516 LPSFLSR 522
               L +
Sbjct: 559 WQQALDK 565



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 110/427 (25%), Positives = 191/427 (44%), Gaps = 48/427 (11%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P + ++N ++  L     +   + + ER+       D  + + L++  C+   +  A   
Sbjct: 255 PNVVTYNIMINGLCKCGRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRV 314

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
              I+      D VT   ++ G C  GK  E+  L+      +C+      V+ Y  +I 
Sbjct: 315 YKEIVESSLVVDAVTHNAMLNGFCRAGKIKESFELWMVMGKENCQ-----TVVSYNILIK 369

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
           GL ++G V +   ++  +  +G  P++  Y  LI   C         G  + AL++ +E 
Sbjct: 370 GLFENGKVEEAISIWELLCKKGCRPESTTYGVLIHGLC-------KNGRLNKALKIFKEA 422

Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
            +G G+L      D  +Y S+++ LCK+  +D+A  +   M  RG   D  V + LI+G+
Sbjct: 423 EDGPGKL------DAYAYSSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGF 476

Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
               +++DA   F  +E +GC P   SYNTLI    K E+  EA S   EM+    +PD 
Sbjct: 477 VRASKLEDAINFFREMECKGCSPTIVSYNTLIKGLCKAERFSEAYSFVKEMLEKEWKPDM 536

Query: 385 -SCIL------------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431
            +C L             A  L++   +  F+ D+T++N L+ GLC   +L  A +L+  
Sbjct: 537 ITCSLLMDGLCQEKKIEMALNLWQQALDKGFKPDITMYNILMHGLCSVCKLEDALQLYSH 596

Query: 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKP 491
           + R    PN+VT   ++ GL                  K+R+  KA E+   + K  + P
Sbjct: 597 MKRSTCVPNLVTRNTLMEGL-----------------YKVRDYEKASEIWDCILKDGLHP 639

Query: 492 DEITVSI 498
           D I+ +I
Sbjct: 640 DIISYNI 646



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 101/416 (24%), Positives = 178/416 (42%), Gaps = 40/416 (9%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
            +++L  +  M   +    M +++SL+  L         + + + +    L+ D V+ N 
Sbjct: 273 FDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRVYKEIVESSLVVDAVTHNA 332

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++N FC+   + ++F  L  ++ K     VV+   LI+GL   GK  EA  ++       
Sbjct: 333 MLNGFCRAGKIKESF-ELWMVMGKENCQTVVSYNILIKGLFENGKVEEAISIWELLCKKG 391

Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC----- 242
           CRP        Y  +I GLCK+G +NK   +F + +      DA+ Y+S++   C     
Sbjct: 392 CRPESTT----YGVLIHGLCKNGRLNKALKIFKEAEDGPGKLDAYAYSSMVDGLCKEGRM 447

Query: 243 ----CAVNWEDAKG------------NTSAALELHEEFVNGNGELGVI-CHPDVLSYCSI 285
                 VN  D +G            N        E+ +N   E+    C P ++SY ++
Sbjct: 448 DEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREMECKGCSPTIVSYNTL 507

Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
           I  LCK     +A     +M  +   PD++  S L+DG C   +I+ A  L+     +G 
Sbjct: 508 IKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDGLCQEKKIEMALNLWQQALDKGF 567

Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCILE----------AAE 392
            PD + YN L++    + K+E+AL LY  M      P+    + ++E          A+E
Sbjct: 568 KPDITMYNILMHGLCSVCKLEDALQLYSHMKRSTCVPNLVTRNTLMEGLYKVRDYEKASE 627

Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
           ++  +       D+  +N  + GLC   R+  A E        G  P  VT+ +++
Sbjct: 628 IWDCILKDGLHPDIISYNITIKGLCSCSRISDAIEFLNDALNRGILPTAVTWNILV 683



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 11/182 (6%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
            ++A  F   M+  +  P M + + L+  L  +K     + L ++    G  PD    NI
Sbjct: 517 FSEAYSFVKEMLEKEWKPDMITCSLLMDGLCQEKKIEMALNLWQQALDKGFKPDITMYNI 576

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           LM+  C +  + DA      + R    P++VT   L+ GL     + +AS +      +D
Sbjct: 577 LMHGLCSVCKLEDALQLYSHMKRSTCVPNLVTRNTLMEGLYKVRDYEKASEI------WD 630

Query: 188 C--RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
           C  +  + P++I Y   I GLC    ++       D   RGI P A  +N L+R    AV
Sbjct: 631 CILKDGLHPDIISYNITIKGLCSCSRISDAIEFLNDALNRGILPTAVTWNILVRA---AV 687

Query: 246 NW 247
           N+
Sbjct: 688 NF 689


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 124/514 (24%), Positives = 216/514 (42%), Gaps = 76/514 (14%)

Query: 68  LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
           L++A+  F ++   +  P   ++N+++        +     L ER    G +P  ++ N 
Sbjct: 289 LDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNC 348

Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
           ++ C  KM  V +A       ++K  +P++ T   LI  LC  GK   A  L        
Sbjct: 349 ILTCLRKMGKVDEALKVFEE-MKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAG 407

Query: 188 CRPNV-------------------------------IPNVICYASIIDGLCKDGFVNKVR 216
             PNV                                P+ I + S+IDGL K G V+   
Sbjct: 408 LFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAY 467

Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
            ++  M       ++ VY SLI+ +      ED         +++++ +N N      C 
Sbjct: 468 KVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGH-------KIYKDMINQN------CS 514

Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
           PD+    + ++ + K    +K + +F ++K+R  +PD   YS LI G    G  ++  +L
Sbjct: 515 PDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYEL 574

Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----NSCIL---- 388
           F S++ +GC+ DT +YN +I+ + K  KV +A  L  EM + G  P      S I     
Sbjct: 575 FYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAK 634

Query: 389 -----EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
                EA  LF    + + EL++ +++ L+DG  K  R+  A+ + ++L + G  PN+ T
Sbjct: 635 IDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYT 694

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMA 485
           +  ++  L     I +A      M+E                  K+R+  KA     +M 
Sbjct: 695 WNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQ 754

Query: 486 KRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519
           K+ +KP  I+ + +   L K  N  E   L   F
Sbjct: 755 KQGMKPSTISYTTMISGLAKAGNIAEAGALFDRF 788



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 110/460 (23%), Positives = 193/460 (41%), Gaps = 102/460 (22%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++++AL  F  M      P + ++N L+  L           L + +   GL P+  ++N
Sbjct: 358 KVDEALKVFEEM-KKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVN 416

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVT-------LG------------------ 161
           I+++  CK   + +A      +  KV +PD +T       LG                  
Sbjct: 417 IMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDS 476

Query: 162 ----------CLIRGLCMQGKFTEASGLFTKFVAFDCRPNV------------------- 192
                      LI+     G+  +   ++   +  +C P++                   
Sbjct: 477 DCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKG 536

Query: 193 ------------IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
                       +P+   Y+ +I GL K GF N+   LF  MK +G   D   YN +I  
Sbjct: 537 RAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDG 596

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
           +C         G  + A +L EE      E      P V++Y S+I+ L K   +D+A  
Sbjct: 597 FCKC-------GKVNKAYQLLEEMKTKGFE------PTVVTYGSVIDGLAKIDRLDEAYM 643

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           LF + KS+ I  +VV+YSSLIDG+  +GRID+A  +   +  +G  P+  ++N+L+++  
Sbjct: 644 LFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALV 703

Query: 361 KIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
           K E++ EAL  +  M  +   P+                         +  L++GLCK  
Sbjct: 704 KAEEINEALVCFQSMKELKCTPNQ----------------------VTYGILINGLCKVR 741

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460
           +   A+  ++++ + G +P+ ++YT MI GL   G I +A
Sbjct: 742 KFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEA 781



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 163/367 (44%), Gaps = 31/367 (8%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           GL PD V+   ++   CK   + +A      + +    P       +I G    GKF EA
Sbjct: 268 GLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEA 327

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
             L  +  A       IP+VI Y  I+  L K G V++   +F +MK +   P+   YN 
Sbjct: 328 YSLLERQRA----KGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMK-KDAAPNLSTYNI 382

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           LI + C A       G    A EL +              P+V +   +++ LCK   +D
Sbjct: 383 LIDMLCRA-------GKLDTAFELRDSMQKAG------LFPNVRTVNIMVDRLCKSQKLD 429

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
           +A  +F +M  +   PD + + SLIDG   +GR+DDA K++  +    C  ++  Y +LI
Sbjct: 430 EACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLI 489

Query: 357 NSYSKIEKVEEALSLYGEMISMGVRPD-------NSCILEAAE------LFRTLHNTKFE 403
            ++    + E+   +Y +MI+    PD         C+ +A E      +F  +   +F 
Sbjct: 490 KNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFV 549

Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
            D   ++ L+ GL K+      +ELF  +   G   +   Y ++I G C  G + KAY L
Sbjct: 550 PDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQL 609

Query: 464 LPDMEEK 470
           L +M+ K
Sbjct: 610 LEEMKTK 616



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 116/460 (25%), Positives = 207/460 (45%), Gaps = 37/460 (8%)

Query: 61  SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120
            K G+V++  A  FF+ +      P   ++ S++G L         + + E L     +P
Sbjct: 249 GKVGKVDM--AWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVP 306

Query: 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180
              + N ++  +       +A+  L R   K   P V+   C++  L   GK  EA  +F
Sbjct: 307 CTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVF 366

Query: 181 TKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240
            +      + +  PN+  Y  +ID LC+ G ++    L   M+  G++P+    N ++  
Sbjct: 367 EEM-----KKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDR 421

Query: 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300
            C +   ++A         + EE          +C PD +++CS+I+ L K   VD A +
Sbjct: 422 LCKSQKLDEA-------CAMFEEMDYK------VCTPDEITFCSLIDGLGKVGRVDDAYK 468

Query: 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360
           ++  M       + +VY+SLI  +   GR +D  K++  + ++ C PD    NT ++   
Sbjct: 469 VYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMF 528

Query: 361 KIEKVEEALSLYGEMISMGVRPD--NSCIL-----------EAAELFRTLHNTKFELDLT 407
           K  + E+  +++ E+ +    PD  +  IL           E  ELF ++      LD  
Sbjct: 529 KAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTR 588

Query: 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
            +N ++DG CK  ++  A++L +++   G EP VVTY  +I GL     +++AY L  + 
Sbjct: 589 AYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEA 648

Query: 468 EEKIRECLKAI--ELLHKMAKRYVKPDEITVSILEELLNK 505
           + K  E    I   L+    K   + DE  + ILEEL+ K
Sbjct: 649 KSKRIELNVVIYSSLIDGFGK-VGRIDEAYL-ILEELMQK 686



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 161/338 (47%), Gaps = 24/338 (7%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K+GE E   A+  F  +   +  P   S++ L+  L    +      L   +   G + D
Sbjct: 529 KAGEPEKGRAM--FEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLD 586

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             + NI+++ FCK   V+ A+  L  +  K F P VVT G +I GL    +  EA  LF 
Sbjct: 587 TRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFE 646

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           +  +      +  NV+ Y+S+IDG  K G +++  ++  ++  +G+ P+ + +NSL+   
Sbjct: 647 EAKS----KRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDAL 702

Query: 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
                          A E++E  V       + C P+ ++Y  +IN LCK    +KA   
Sbjct: 703 V-------------KAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVF 749

Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
           + +M+ +G+ P  + Y+++I G    G I +A  LF   ++ G +PD++ YN +I   S 
Sbjct: 750 WQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSN 809

Query: 362 IEKVEEALSLYGEMISMGVRPDN-SCILEAAELFRTLH 398
             +  +A SL+ E    G+   N +C++    L  TLH
Sbjct: 810 GNRAMDAFSLFEETRRRGLPIHNKTCVV----LLDTLH 843



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 106/418 (25%), Positives = 185/418 (44%), Gaps = 65/418 (15%)

Query: 67  ELNDALCFFNYMIHMQPTPFMP-SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
           ++N A+ +F +       P  P S+NSLL  +A  +   NF  L + L  + +     S+
Sbjct: 77  DVNRAIEYFRWYERRTELPHCPESYNSLLLVMARCR---NFDALDQILGEMSVAGFGPSV 133

Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
           N    C   ++G   A       LR+ +  DVV +   +R    +  F+  + L   F A
Sbjct: 134 N---TCIEMVLGCVKA-----NKLREGY--DVVQM---MRKFKFRPAFSAYTTLIGAFSA 180

Query: 186 FDCRPNVI------------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233
            +    ++            P V  + ++I G  K+G V+    L  +MK   +  D  +
Sbjct: 181 VNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVL 240

Query: 234 YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDV 293
           YN  I  +          G    A +   E +  NG       PD ++Y S+I  LCK  
Sbjct: 241 YNVCIDSF-------GKVGKVDMAWKFFHE-IEANG-----LKPDEVTYTSMIGVLCKAN 287

Query: 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353
            +D+A E+F  ++    +P    Y+++I GY   G+ D+A  L     ++G IP   +YN
Sbjct: 288 RLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYN 347

Query: 354 TLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLV 413
            ++    K+ KV+EAL ++ EM             +AA             +L+ +N L+
Sbjct: 348 CILTCLRKMGKVDEALKVFEEMKK-----------DAAP------------NLSTYNILI 384

Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKI 471
           D LC++ +L +A+EL   + + G  PNV T  +M+  LC    +++A  +  +M+ K+
Sbjct: 385 DMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKV 442



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/197 (21%), Positives = 77/197 (39%), Gaps = 31/197 (15%)

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-NSCI------------LEAAELFRTL 397
           SYN+L+   ++    +    + GEM   G  P  N+CI             E  ++ + +
Sbjct: 100 SYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMM 159

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
              KF    + +  L+              LF+++   G EP V  +T +I G   EG +
Sbjct: 160 RKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRV 219

Query: 458 EKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITVSIL 499
           + A  LL +M+                   K+ +   A +  H++    +KPDE+T + +
Sbjct: 220 DSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSM 279

Query: 500 EELLNKDENCHECMNLL 516
             +L K     E + + 
Sbjct: 280 IGVLCKANRLDEAVEMF 296


>gi|125569067|gb|EAZ10582.1| hypothetical protein OsJ_00414 [Oryza sativa Japonica Group]
          Length = 1003

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/412 (25%), Positives = 191/412 (46%), Gaps = 47/412 (11%)

Query: 116 IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
           +G +P   + + +++   K   V +AF    ++      P+V     LI  LC   +F +
Sbjct: 297 LGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDD 356

Query: 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
           A  LF +         + PN + YA +I  LCK G +     LF  M+ +GI    + YN
Sbjct: 357 ADRLFKEMAG----RGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYN 412

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           SLI  YC   + + A+G            ++G  + G+   P   SY  +I  LC++  +
Sbjct: 413 SLINGYCKQGSLDRARG-----------LLSGMVKEGLT--PTAASYSPLIAGLCRNGDL 459

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
               EL  +M  RGI  +   +++LI+G+C   ++D+A +LF  +     IP+  ++N +
Sbjct: 460 SSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVM 519

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKF 402
           I  Y  +  + +A  LY +M+ MG++PDN             S + +A E    L N+  
Sbjct: 520 IEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYA 579

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
            L+      L+ G  +  R    + L+ ++   G + ++V++T+++            Y 
Sbjct: 580 VLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIV------------YA 627

Query: 463 LLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMN 514
            L    +K + C+    L  +M ++ VKPD+I  + + + L+K+EN  + +N
Sbjct: 628 ALKQ-HDKEKSCV----LFREMKEQGVKPDDIFYTCMIDALSKEENMIQALN 674



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 170/370 (45%), Gaps = 30/370 (8%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           R+ + G+    V  N+LM   CK + V +A      ++    + D VT   L+ G C   
Sbjct: 223 RMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRME 282

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
           +   A  +    +    R   +P+    + +ID L K   V +   L   +   G+ P+ 
Sbjct: 283 ELEMALRITHDMI----RLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNV 338

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
           F YN+LI   C    ++DA         L +E   G G       P+ ++Y  +I++LCK
Sbjct: 339 FAYNALIDKLCKNERFDDAD-------RLFKEMA-GRG-----LEPNEVTYAILIHALCK 385

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
             +++ A  LF  M+ +GI   V  Y+SLI+GYC  G +D AR L   +  EG  P  +S
Sbjct: 386 RGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAAS 445

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL-------------EAAELFRTLH 398
           Y+ LI    +   +   + L+ EM   G+  +N                 EAA LF  + 
Sbjct: 446 YSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMI 505

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
           ++    +   FN +++G C    +R A++L+ ++   G +P+  TY  +I GLC+  G+ 
Sbjct: 506 DSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVS 565

Query: 459 KAYDLLPDME 468
           KA + + D+E
Sbjct: 566 KANEFVADLE 575



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 116/440 (26%), Positives = 188/440 (42%), Gaps = 40/440 (9%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G +E  DALC F+ M        +  +NSL+     +        L   +   GL P 
Sbjct: 385 KRGMIE--DALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPT 442

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             S + L+   C+   +S        +  +  + +  T   LI G C   K  EA+ LF 
Sbjct: 443 AASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFD 502

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           K +      NVIPN + +  +I+G C  G + K   L+  M   G+ PD + Y SLI   
Sbjct: 503 KMI----DSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGL 558

Query: 242 CCAVNWEDAK-------------GNTSAALELHEEFVNGN--------GELGVI-CHPDV 279
           C       A               N S    L+  F  G          E+ V     D+
Sbjct: 559 CLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDL 618

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           +S+  I+ +  K    +K+  LF +MK +G+ PD + Y+ +ID       +  A   +  
Sbjct: 619 VSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQ 678

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---SCILEA------ 390
           +  +G  P+T ++  LIN+  K   +  A  L  EM++  V P+    +C L+       
Sbjct: 679 MVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGD 738

Query: 391 AELFRTLHNTKFELDLTV---FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
            E  + LH+   +  L     FN L+ GLCK+ +++ A +L  K+   G  P+ ++Y+ +
Sbjct: 739 MEKAKDLHSAMLQGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTI 798

Query: 448 ICGLCIEGGIEKAYDLLPDM 467
           I  LC  G I KA++L  +M
Sbjct: 799 IHELCKMGDINKAFELWNEM 818



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 122/256 (47%), Gaps = 35/256 (13%)

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
            R LF  M   G++ D +VY + IR YC + N + A+G     + +  E V  +      
Sbjct: 182 ARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARG---LVVRMESEGVKASA----- 233

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
                + Y  ++  LCK++ V +A E+   M + G+  D V Y +L+ G+C M  ++ A 
Sbjct: 234 -----VPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMAL 288

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
           ++   +   G +P  ++ + +I+   K E VEEA SL  ++  +G+ P            
Sbjct: 289 RITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVP------------ 336

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
                     ++  +N L+D LCK+ R   A  LFK++   G EPN VTY ++I  LC  
Sbjct: 337 ----------NVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKR 386

Query: 455 GGIEKAYDLLPDMEEK 470
           G IE A  L   M +K
Sbjct: 387 GMIEDALCLFDKMRDK 402



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 175/402 (43%), Gaps = 42/402 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++++A   F+ MI     P   +FN ++              L +++  +GL PD  +  
Sbjct: 493 KMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYR 552

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++  C   GVS A   +  +       +  +L  L+ G   +G+FTE   L+ +    
Sbjct: 553 SLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVR 612

Query: 187 DCRPNVIP-NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
             + +++   +I YA++     K     K  VLF +MK +G+ PD   Y        C +
Sbjct: 613 GVKLDLVSFTIIVYAAL-----KQHDKEKSCVLFREMKEQGVKPDDIFYT-------CMI 660

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
           +    + N   AL   ++ V           P+ +++  +IN+LCK   +  A+ L  +M
Sbjct: 661 DALSKEENMIQALNCWDQMVVDG------YSPNTVTHTVLINNLCKSGYLGSAELLCKEM 714

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
            +  ++P+   Y+  +D +   G ++ A+ L  ++  +G +    S+N LI    K  K+
Sbjct: 715 LAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAM-LQGHLASIVSFNILIKGLCKAGKI 773

Query: 366 EEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
           +EA+ L  ++   G  PD  CI                     ++ ++  LCK   +  A
Sbjct: 774 QEAIDLMSKITESGFSPD--CI--------------------SYSTIIHELCKMGDINKA 811

Query: 426 WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +EL+ ++   G +P+VV Y + I    + G  +KA  +  +M
Sbjct: 812 FELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNM 853



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 130/295 (44%), Gaps = 18/295 (6%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           S  +LL     +  +     L + +   G+  D VS  I++    K      + V    +
Sbjct: 585 SLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREM 644

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
             +   PD +   C+I  L  +    +A   + + V     PN + + +    +I+ LCK
Sbjct: 645 KEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTV----LINNLCK 700

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
            G++    +L  +M    + P+ F YN       C +++   +G+   A +LH   + G+
Sbjct: 701 SGYLGSAELLCKEMLAGNVLPNKFTYN-------CFLDYFATEGDMEKAKDLHSAMLQGH 753

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                     ++S+  +I  LCK   + +A +L   +   G  PD + YS++I   C MG
Sbjct: 754 -------LASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMG 806

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            I+ A +L+  +  +G  PD  +YN  I   +   + ++AL +Y  MI  GV+P+
Sbjct: 807 DINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPN 861



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 4/118 (3%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           SFN L+  L         I L  ++   G  PD +S + +++  CKM  ++ AF     +
Sbjct: 759 SFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEM 818

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGL 206
           L K   PDVV     IR   + G+  +A G++T  +    R  V PN   Y +++ G+
Sbjct: 819 LYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMI----RSGVQPNWDTYRALLSGI 872



 Score = 41.6 bits (96), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 75/209 (35%), Gaps = 39/209 (18%)

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           S GI  +    S ++     + +   AR LF  +   G   D   Y   I +Y +   ++
Sbjct: 156 SSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLD 215

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
            A  L   M S GV+                           +N L+ GLCK+ R++ A 
Sbjct: 216 GARGLVVRMESEGVKASA----------------------VPYNVLMYGLCKNMRVQEAV 253

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAK 486
           E+   +   G   + VTY  ++ G C                 ++ E   A+ + H M +
Sbjct: 254 EVKNVMVNIGVTADEVTYRTLVYGFC-----------------RMEELEMALRITHDMIR 296

Query: 487 RYVKPDEITVSILEELLNKDENCHECMNL 515
               P E   S + + L K E   E  +L
Sbjct: 297 LGFVPSEANCSFMIDELRKKELVEEAFSL 325


>gi|115434588|ref|NP_001042052.1| Os01g0153200 [Oryza sativa Japonica Group]
 gi|113531583|dbj|BAF03966.1| Os01g0153200 [Oryza sativa Japonica Group]
          Length = 1139

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/412 (25%), Positives = 191/412 (46%), Gaps = 47/412 (11%)

Query: 116 IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
           +G +P   + + +++   K   V +AF    ++      P+V     LI  LC   +F +
Sbjct: 297 LGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDD 356

Query: 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
           A  LF +         + PN + YA +I  LCK G +     LF  M+ +GI    + YN
Sbjct: 357 ADRLFKEMAG----RGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYN 412

Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
           SLI  YC   + + A+G            ++G  + G+   P   SY  +I  LC++  +
Sbjct: 413 SLINGYCKQGSLDRARG-----------LLSGMVKEGLT--PTAASYSPLIAGLCRNGDL 459

Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
               EL  +M  RGI  +   +++LI+G+C   ++D+A +LF  +     IP+  ++N +
Sbjct: 460 SSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVM 519

Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDN-------------SCILEAAELFRTLHNTKF 402
           I  Y  +  + +A  LY +M+ MG++PDN             S + +A E    L N+  
Sbjct: 520 IEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYA 579

Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
            L+      L+ G  +  R    + L+ ++   G + ++V++T+++            Y 
Sbjct: 580 VLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIV------------YA 627

Query: 463 LLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMN 514
            L    +K + C+    L  +M ++ VKPD+I  + + + L+K+EN  + +N
Sbjct: 628 AL-KQHDKEKSCV----LFREMKEQGVKPDDIFYTCMIDALSKEENMIQALN 674



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 111/419 (26%), Positives = 186/419 (44%), Gaps = 48/419 (11%)

Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
           R+ + G+    V  N+LM   CK + V +A      ++    + D VT   L+ G C   
Sbjct: 223 RMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRME 282

Query: 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
           +   A  +    +    R   +P+    + +ID L K   V +   L   +   G+ P+ 
Sbjct: 283 ELEMALRITHDMI----RLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNV 338

Query: 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291
           F YN+LI   C    ++DA         L +E   G G       P+ ++Y  +I++LCK
Sbjct: 339 FAYNALIDKLCKNERFDDAD-------RLFKEMA-GRG-----LEPNEVTYAILIHALCK 385

Query: 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351
             +++ A  LF  M+ +GI   V  Y+SLI+GYC  G +D AR L   +  EG  P  +S
Sbjct: 386 RGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAAS 445

Query: 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL-------------EAAELFRTLH 398
           Y+ LI    +   +   + L+ EM   G+  +N                 EAA LF  + 
Sbjct: 446 YSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMI 505

Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
           ++    +   FN +++G C    +R A++L+ ++   G +P+  TY  +I GLC+  G+ 
Sbjct: 506 DSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVS 565

Query: 459 KAYDLLPDMEEK----------------IREC--LKAIELLHKMAKRYVKPDEITVSIL 499
           KA + + D+E                   RE    +   L  +MA R VK D ++ +I+
Sbjct: 566 KANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTII 624



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 116/440 (26%), Positives = 188/440 (42%), Gaps = 40/440 (9%)

Query: 62  KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121
           K G +E  DALC F+ M        +  +NSL+     +        L   +   GL P 
Sbjct: 385 KRGMIE--DALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPT 442

Query: 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFT 181
             S + L+   C+   +S        +  +  + +  T   LI G C   K  EA+ LF 
Sbjct: 443 AASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFD 502

Query: 182 KFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241
           K +      NVIPN + +  +I+G C  G + K   L+  M   G+ PD + Y SLI   
Sbjct: 503 KMI----DSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGL 558

Query: 242 CCAVNWEDAK-------------GNTSAALELHEEFVNGN--------GELGVI-CHPDV 279
           C       A               N S    L+  F  G          E+ V     D+
Sbjct: 559 CLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDL 618

Query: 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339
           +S+  I+ +  K    +K+  LF +MK +G+ PD + Y+ +ID       +  A   +  
Sbjct: 619 VSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQ 678

Query: 340 IESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---SCILEA------ 390
           +  +G  P+T ++  LIN+  K   +  A  L  EM++  V P+    +C L+       
Sbjct: 679 MVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGD 738

Query: 391 AELFRTLHNTKFELDLTV---FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVM 447
            E  + LH+   +  L     FN L+ GLCK+ +++ A +L  K+   G  P+ ++Y+ +
Sbjct: 739 MEKAKDLHSAMLQGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTI 798

Query: 448 ICGLCIEGGIEKAYDLLPDM 467
           I  LC  G I KA++L  +M
Sbjct: 799 IHELCKMGDINKAFELWNEM 818



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 143/319 (44%), Gaps = 53/319 (16%)

Query: 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274
            R LF  M   G++ D +VY + IR YC + N + A+G     + +  E V  +      
Sbjct: 182 ARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARG---LVVRMESEGVKASA----- 233

Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334
                + Y  ++  LCK++ V +A E+   M + G+  D V Y +L+ G+C M  ++ A 
Sbjct: 234 -----VPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMAL 288

Query: 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394
           ++   +   G +P  ++ + +I+   K E VEEA SL  ++  +G+ P            
Sbjct: 289 RITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVP------------ 336

Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
                     ++  +N L+D LCK+ R   A  LFK++   G EPN VTY ++I  LC  
Sbjct: 337 ----------NVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKR 386

Query: 455 GGIEKAYDLLPDMEEK-IRECL-----------------KAIELLHKMAKRYVKPDEITV 496
           G IE A  L   M +K I+  +                 +A  LL  M K  + P   + 
Sbjct: 387 GMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASY 446

Query: 497 SILEELLNKDENCHECMNL 515
           S L   L ++ +   CM L
Sbjct: 447 SPLIAGLCRNGDLSSCMEL 465



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 92/402 (22%), Positives = 174/402 (43%), Gaps = 42/402 (10%)

Query: 67  ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
           ++++A   F+ MI     P   +FN ++              L +++  +GL PD  +  
Sbjct: 493 KMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYR 552

Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
            L++  C   GVS A   +  +       +  +L  L+ G   +G+FTE   L+ +    
Sbjct: 553 SLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVR 612

Query: 187 DCRPNVIP-NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
             + +++   +I YA++     K     K  VLF +MK +G+ PD   Y        C +
Sbjct: 613 GVKLDLVSFTIIVYAAL-----KQHDKEKSCVLFREMKEQGVKPDDIFYT-------CMI 660

Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
           +    + N   AL   ++ V           P+ +++  +IN+LCK   +  A+ L  +M
Sbjct: 661 DALSKEENMIQALNCWDQMVVDG------YSPNTVTHTVLINNLCKSGYLGSAELLCKEM 714

Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
            +  ++P+   Y+  +D +   G ++ A+ L  S   +G +    S+N LI    K  K+
Sbjct: 715 LAGNVLPNKFTYNCFLDYFATEGDMEKAKDLH-SAMLQGHLASIVSFNILIKGLCKAGKI 773

Query: 366 EEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
           +EA+ L  ++   G  PD  CI                     ++ ++  LCK   +  A
Sbjct: 774 QEAIDLMSKITESGFSPD--CI--------------------SYSTIIHELCKMGDINKA 811

Query: 426 WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +EL+ ++   G +P+VV Y + I    + G  +KA  +  +M
Sbjct: 812 FELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNM 853



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 130/295 (44%), Gaps = 18/295 (6%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           S  +LL     +  +     L + +   G+  D VS  I++    K      + V    +
Sbjct: 585 SLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREM 644

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
             +   PD +   C+I  L  +    +A   + + V     PN + + +    +I+ LCK
Sbjct: 645 KEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTV----LINNLCK 700

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
            G++    +L  +M    + P+ F YN       C +++   +G+   A +LH   + G+
Sbjct: 701 SGYLGSAELLCKEMLAGNVLPNKFTYN-------CFLDYFATEGDMEKAKDLHSAMLQGH 753

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
                     ++S+  +I  LCK   + +A +L   +   G  PD + YS++I   C MG
Sbjct: 754 -------LASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMG 806

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
            I+ A +L+  +  +G  PD  +YN  I   +   + ++AL +Y  MI  GV+P+
Sbjct: 807 DINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPN 861



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 4/118 (3%)

Query: 89  SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
           SFN L+  L         I L  ++   G  PD +S + +++  CKM  ++ AF     +
Sbjct: 759 SFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEM 818

Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGL 206
           L K   PDVV     IR   + G+  +A G++T  +    R  V PN   Y +++ G+
Sbjct: 819 LYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMI----RSGVQPNWDTYRALLSGI 872



 Score = 42.0 bits (97), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 75/209 (35%), Gaps = 39/209 (18%)

Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
           S GI  +    S ++     + +   AR LF  +   G   D   Y   I +Y +   ++
Sbjct: 156 SSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLD 215

Query: 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426
            A  L   M S GV+                           +N L+ GLCK+ R++ A 
Sbjct: 216 GARGLVVRMESEGVKASA----------------------VPYNVLMYGLCKNMRVQEAV 253

Query: 427 ELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAK 486
           E+   +   G   + VTY  ++ G C                 ++ E   A+ + H M +
Sbjct: 254 EVKNVMVNIGVTADEVTYRTLVYGFC-----------------RMEELEMALRITHDMIR 296

Query: 487 RYVKPDEITVSILEELLNKDENCHECMNL 515
               P E   S + + L K E   E  +L
Sbjct: 297 LGFVPSEANCSFMIDELRKKELVEEAFSL 325


>gi|414877568|tpg|DAA54699.1| TPA: hypothetical protein ZEAMMB73_211194, partial [Zea mays]
          Length = 709

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 159/347 (45%), Gaps = 34/347 (9%)

Query: 137 GVSDAFVALGRILRKV-FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPN 195
           G  D  +     +R+V   PDVVT  CLI+GLC   +  EA  +    +   C P+ I  
Sbjct: 212 GRVDKALEFAERMRRVGVDPDVVTYNCLIKGLCGARRIVEALEMIGSMLQNGCPPDKIS- 270

Query: 196 VICYASIIDGLCKDGFVNKVRVLFLDMKG-RGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
              Y +++  LCK+  V +V  L   M+   GI+PD   YN LI             G+ 
Sbjct: 271 ---YFTVMSFLCKEKRVAEVWNLLERMRNDAGIFPDQITYNMLIHGLA-------KHGHA 320

Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
             AL    E        G     D + Y +I++S C +  + +AKE+  +M S+G  PDV
Sbjct: 321 DEALTFLRE------SEGKRFRVDQVGYSAIVHSFCLNGRMSEAKEIIGEMISKGCRPDV 374

Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
           V YS+++DG+C +G +D ARK+   +   GC P+T ++  L+N   K+ K  EA  L  +
Sbjct: 375 VTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTALLNGLCKVGKSSEAWELLNK 434

Query: 375 --------------MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW 420
                         +I  G R +   ++E+ ++   +    F       N L+  LCK  
Sbjct: 435 SEEEWWTPSGITYSVIMHGFRREGK-LVESCDVVMQMLQKGFFPTAVEINLLIHALCKEQ 493

Query: 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
           +   A +  ++    G   NVV +T +I G   +G +E A  LL DM
Sbjct: 494 KPARAKDFMEQCQSKGCFINVVNFTTVIHGFSRQGDLESALSLLDDM 540



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/418 (22%), Positives = 168/418 (40%), Gaps = 60/418 (14%)

Query: 64  GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERL-NTIGLLPDF 122
           G   + +AL     M+     P   S+ +++  L  +K       L ER+ N  G+ PD 
Sbjct: 245 GARRIVEALEMIGSMLQNGCPPDKISYFTVMSFLCKEKRVAEVWNLLERMRNDAGIFPDQ 304

Query: 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182
           ++ N+L++   K     +A   L     K F  D V    ++   C+ G+ +EA  +  +
Sbjct: 305 ITYNMLIHGLAKHGHADEALTFLRESEGKRFRVDQVGYSAIVHSFCLNGRMSEAKEIIGE 364

Query: 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
            ++  CRP+V+     Y++++DG C+ G +++ R +   M   G  P+   + +L+   C
Sbjct: 365 MISKGCRPDVVT----YSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTALLNGLC 420

Query: 243 CAVNWEDAKGNTSAALEL----HEEFVNGNG-ELGVICHP-----DVLSYCSIINSLCKD 292
                    G +S A EL     EE+   +G    VI H       ++  C ++      
Sbjct: 421 KV-------GKSSEAWELLNKSEEEWWTPSGITYSVIMHGFRREGKLVESCDVV------ 467

Query: 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352
                     + M  +G  P  V  + LI   C   +   A+      +S+GC  +  ++
Sbjct: 468 ----------MQMLQKGFFPTAVEINLLIHALCKEQKPARAKDFMEQCQSKGCFINVVNF 517

Query: 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCL 412
            T+I+ +S+   +E ALSL  +M      PD        +                    
Sbjct: 518 TTVIHGFSRQGDLESALSLLDDMYLTNRHPDVVTYTVVVD-------------------- 557

Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
              L +  +++ A  L +K+   G  P  VTY  +I   C +G +E   +LL  M  K
Sbjct: 558 --ALGRKGKMKEATALVEKMLNRGLLPTPVTYRTVIHRYCEKGAVEDLLNLLDKMLTK 613



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/283 (20%), Positives = 105/283 (37%), Gaps = 71/283 (25%)

Query: 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEK 364
           M+  G  PD+ + +  ++   + GR+D A +    +   G  PD  +YN LI       +
Sbjct: 189 MQKDGCAPDICICNVAVNVLVVAGRVDKALEFAERMRRVGVDPDVVTYNCLIKGLCGARR 248

Query: 365 VEEALSLYGEMISMGVRPDNSCIL------------------------------------ 388
           + EAL + G M+  G  PD                                         
Sbjct: 249 IVEALEMIGSMLQNGCPPDKISYFTVMSFLCKEKRVAEVWNLLERMRNDAGIFPDQITYN 308

Query: 389 -------------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
                        EA    R     +F +D   ++ +V   C + R+  A E+  ++   
Sbjct: 309 MLIHGLAKHGHADEALTFLRESEGKRFRVDQVGYSAIVHSFCLNGRMSEAKEIIGEMISK 368

Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE------------------KIRECLKA 477
           G  P+VVTY+ ++ G C  G +++A  ++  M +                  K+ +  +A
Sbjct: 369 GCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTALLNGLCKVGKSSEA 428

Query: 478 IELLHKMAKRYVKPDEITVSILEELLNKD----ENCHECMNLL 516
            ELL+K  + +  P  IT S++     ++    E+C   M +L
Sbjct: 429 WELLNKSEEEWWTPSGITYSVIMHGFRREGKLVESCDVVMQML 471



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 94/228 (41%), Gaps = 38/228 (16%)

Query: 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348
           L +  L D A+ +   M  RGI      ++ L+  Y   G++  A ++   ++ +GC PD
Sbjct: 138 LSRTRLHDPARRVVRLMIRRGIRRGTRQFAHLMLSYSRAGKLRSAMRVLQLMQKDGCAPD 197

Query: 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTV 408
               N  +N      +V++AL     M  +GV P                      D+  
Sbjct: 198 ICICNVAVNVLVVAGRVDKALEFAERMRRVGVDP----------------------DVVT 235

Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
           +NCL+ GLC + R+  A E+   + + G  P+ ++Y  ++  LC E  + + ++LL  M 
Sbjct: 236 YNCLIKGLCGARRIVEALEMIGSMLQNGCPPDKISYFTVMSFLCKEKRVAEVWNLLERMR 295

Query: 469 EKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516
                               + PD+IT ++L   L K  +  E +  L
Sbjct: 296 NDA----------------GIFPDQITYNMLIHGLAKHGHADEALTFL 327


>gi|326513552|dbj|BAJ87795.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 538

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 160/344 (46%), Gaps = 43/344 (12%)

Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250
            V P V  Y  ++DGL   G ++KV  +F ++K + +  D + Y+++I  YC A      
Sbjct: 198 GVEPTVGTYTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSAVINAYCRA------ 251

Query: 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
            GN   A E+ +E V GNG       P+  +Y ++IN  CK   ++ A+ L  DM+ RG+
Sbjct: 252 -GNVRRASEVFDECV-GNG-----IEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRGV 304

Query: 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370
             + ++++++IDGYC  G +D A ++   +E  G   D  +YNTL     ++ ++E+A  
Sbjct: 305 GHNQIIFNTMIDGYCRHGMVDKALEIKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKK 364

Query: 371 LYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
           L   M   GV  +                ++EA  LFR +        +  +N ++DG  
Sbjct: 365 LLHIMTENGVESNYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYI 424

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKA 477
           KS  +R A    K++ + G  P+V TY  ++ G C+ G ++                  A
Sbjct: 425 KSGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVD-----------------VA 467

Query: 478 IELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521
           + L  +M +R  KP+ +  + L   L K+    E      + L+
Sbjct: 468 LRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLA 511



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 166/379 (43%), Gaps = 41/379 (10%)

Query: 90  FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149
           +N LL     +K       + + + + G+ P   +  IL++       +S        I 
Sbjct: 171 YNPLLDTYTRQKNDARVAEVLKEMESGGVEPTVGTYTILVDGLSTAGDISKVESVFDEIK 230

Query: 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI-PNVICYASIIDGLCK 208
           RK  + DV     +I   C  G    AS +F      +C  N I PN   Y ++I+G CK
Sbjct: 231 RKNVAGDVYFYSAVINAYCRAGNVRRASEVFD-----ECVGNGIEPNERTYGALINGFCK 285

Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
            G +    +L  DM+ RG+  +  ++N++I  YC         G    ALE+        
Sbjct: 286 IGQIEAAEMLLTDMQLRGVGHNQIIFNTMIDGYC-------RHGMVDKALEIKAVMERMG 338

Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
            +L      DV +Y ++   LC+   ++ AK+L   M   G+  + V Y++LI  +   G
Sbjct: 339 IQL------DVYTYNTLACGLCRVNRMEDAKKLLHIMTENGVESNYVSYTTLISIHSKEG 392

Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL 388
            + +AR+LF  +E +G  P   +YN +I+ Y K   + EA     EM   G+ PD     
Sbjct: 393 DMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPD----- 447

Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
                            +  +  LV G C + ++  A  LF+++ + G +PNVV YT +I
Sbjct: 448 -----------------VYTYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALI 490

Query: 449 CGLCIEGGIEKAYDLLPDM 467
            GL  EG  E+A+    +M
Sbjct: 491 SGLAKEGRSEEAFQFYDNM 509



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 139/319 (43%), Gaps = 44/319 (13%)

Query: 111 ERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170
           +R N  G   D    + ++N +C+   V  A       +     P+  T G LI G C  
Sbjct: 230 KRKNVAG---DVYFYSAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGALINGFCKI 286

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G+   A  L T          V  N I + ++IDG C+ G V+K   +   M+  GI  D
Sbjct: 287 GQIEAAEMLLTDMQL----RGVGHNQIIFNTMIDGYCRHGMVDKALEIKAVMERMGIQLD 342

Query: 231 AFVYNSLIRVYCCAVNWEDAK----------------------------GNTSAALELHE 262
            + YN+L    C     EDAK                            G+   A  L  
Sbjct: 343 VYTYNTLACGLCRVNRMEDAKKLLHIMTENGVESNYVSYTTLISIHSKEGDMVEARRLFR 402

Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
           + + G G       P V++Y  +I+   K   + +A+    +M+ +G++PDV  Y++L+ 
Sbjct: 403 D-MEGKG-----SRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVYTYAALVH 456

Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
           G+C+ G++D A +LF  ++  G  P+  +Y  LI+  +K  + EEA   Y  M++ G+ P
Sbjct: 457 GHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTP 516

Query: 383 DNSCILEAAELFRTLHNTK 401
           D++     + L  +LH  K
Sbjct: 517 DDTLY---SMLVGSLHTDK 532



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 142/313 (45%), Gaps = 29/313 (9%)

Query: 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
           G    A+ L  K +A  C   + P  +  + ++DG CK G ++  R L  +M   G+  +
Sbjct: 111 GHLLPAAELLRKALA-SCPGCITP--LSASVVVDGFCKAGRMDDARRLLDEMPRHGVKLN 167

Query: 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290
           A  YN L+  Y         + N +   E+ +E  +G  E      P V +Y  +++ L 
Sbjct: 168 ACCYNPLLDTYT-------RQKNDARVAEVLKEMESGGVE------PTVGTYTILVDGLS 214

Query: 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350
               + K + +F ++K + +  DV  YS++I+ YC  G +  A ++F      G  P+  
Sbjct: 215 TAGDISKVESVFDEIKRKNVAGDVYFYSAVINAYCRAGNVRRASEVFDECVGNGIEPNER 274

Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------DNSC----ILEAAELFRTL 397
           +Y  LIN + KI ++E A  L  +M   GV           D  C    + +A E+   +
Sbjct: 275 TYGALINGFCKIGQIEAAEMLLTDMQLRGVGHNQIIFNTMIDGYCRHGMVDKALEIKAVM 334

Query: 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457
                +LD+  +N L  GLC+  R+  A +L   +   G E N V+YT +I     EG +
Sbjct: 335 ERMGIQLDVYTYNTLACGLCRVNRMEDAKKLLHIMTENGVESNYVSYTTLISIHSKEGDM 394

Query: 458 EKAYDLLPDMEEK 470
            +A  L  DME K
Sbjct: 395 VEARRLFRDMEGK 407



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 117/251 (46%), Gaps = 17/251 (6%)

Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
           G+  + +  N +++ +C+   V  A      + R     DV T   L  GLC   +  +A
Sbjct: 303 GVGHNQIIFNTMIDGYCRHGMVDKALEIKAVMERMGIQLDVYTYNTLACGLCRVNRMEDA 362

Query: 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236
                K +       V  N + Y ++I    K+G + + R LF DM+G+G  P    YN 
Sbjct: 363 K----KLLHIMTENGVESNYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNV 418

Query: 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296
           +I  Y             S ++   E F     + G++  PDV +Y ++++  C +  VD
Sbjct: 419 MIDGYI-----------KSGSIREAERFKKEMEKKGLV--PDVYTYAALVHGHCVNGKVD 465

Query: 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356
            A  LF +MK RG  P+VV Y++LI G    GR ++A + + ++ + G  PD + Y+ L+
Sbjct: 466 VALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDDTLYSMLV 525

Query: 357 NSYSKIEKVEE 367
            S    ++ +E
Sbjct: 526 GSLHTDKRKDE 536


>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
 gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
          Length = 413

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 159/352 (45%), Gaps = 42/352 (11%)

Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFS--PDVVTLGCLIRGLCMQGKFTEAS 177
           PD V+ N L+  +CK  G  D  + + R L++  S  P+ V+   L+  LC   + T+A 
Sbjct: 9   PDVVAYNTLIAGYCK-AGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDAL 67

Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
            +F + +    + +V  NV    ++I   C+ G + + R L   M       D F Y+ L
Sbjct: 68  AVFQEMLGAGLQADV--NVC--NTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYL 123

Query: 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
           +          DA G    A +  E F N        C PD + Y  +I+ L K   VD+
Sbjct: 124 M----------DALGKAGRAAKALEVFSNMQK---AGCMPDTVVYNVLISCLGKQGKVDE 170

Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           A EL  DM  +GI+PD   Y+ +ID     GR + A   F  ++     PD  +YNTL+N
Sbjct: 171 ALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLN 230

Query: 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC 417
              K+ + +EA  L+ EM +      N C+                 DLT F  L+D L 
Sbjct: 231 GLKKLRRTDEACDLFDEMQA------NKCM----------------PDLTTFGTLIDTLA 268

Query: 418 KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
           K+ R+  A E   +L + G  PN   Y  +I G C  G ++K Y+L  DM E
Sbjct: 269 KAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRSGQVDKGYELFQDMIE 320



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/387 (26%), Positives = 171/387 (44%), Gaps = 41/387 (10%)

Query: 85  PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144
           P   SF++L+  L       + + + + +   GL  D    N L++C C++  +  A   
Sbjct: 45  PNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRL 104

Query: 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID 204
           L  +    F  DV T   L+  L   G+  +A  +F+      C    +P+ + Y  +I 
Sbjct: 105 LHHMTAHAFVLDVFTYSYLMDALGKAGRAAKALEVFSNMQKAGC----MPDTVVYNVLIS 160

Query: 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264
            L K G V++   L  DM  +GI PD   YN +I V      +E A          +  F
Sbjct: 161 CLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKA----------YSFF 210

Query: 265 VNGNGELGVICH-PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323
               G +    H PDV++Y +++N L K    D+A +LF +M++   +PD+  + +LID 
Sbjct: 211 ----GMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDT 266

Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
               GR++DA +    +   G +P++  YN LI+ + +  +V++   L+ +MI     PD
Sbjct: 267 LAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPD 326

Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
           +                        +  LV G  +      A EL +++ R G  P + T
Sbjct: 327 S----------------------ITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALAT 364

Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEK 470
           Y V+I  L + G +E AY L  +M  K
Sbjct: 365 YNVLIRSLSMAGQVEDAYTLFKEMIAK 391



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 139/307 (45%), Gaps = 20/307 (6%)

Query: 80  HMQPTPFMP---SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMI 136
           HM    F+    +++ L+ AL         + +   +   G +PD V  N+L++C  K  
Sbjct: 107 HMTAHAFVLDVFTYSYLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQG 166

Query: 137 GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNV 196
            V +A   L  + RK   PD  T   +I  L   G++ +A   F        R    P+V
Sbjct: 167 KVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMK----RRKHSPDV 222

Query: 197 ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSA 256
           + Y ++++GL K    ++   LF +M+     PD   + +LI     A   EDA      
Sbjct: 223 VTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDA------ 276

Query: 257 ALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV 316
            LE     V    ++G +  P+   Y ++I+  C+   VDK  ELF DM      PD + 
Sbjct: 277 -LEQSARLV----KMGHV--PNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSIT 329

Query: 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376
           Y+ L+ G+   G    A +L   +  EG  P  ++YN LI S S   +VE+A +L+ EMI
Sbjct: 330 YTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMI 389

Query: 377 SMGVRPD 383
           + G  PD
Sbjct: 390 AKGFNPD 396



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 137/313 (43%), Gaps = 53/313 (16%)

Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG-IYPDAFVYNSLIRVYCCAVNWEDAKG 252
           P+V+ Y ++I G CK G  ++   +F  +K  G   P+A  +++L+ ++ C ++      
Sbjct: 9   PDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLV-IFLCKMS------ 61

Query: 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP 312
             + AL + +E       LG     DV    ++I+  C+  ++ +A+ L   M +   + 
Sbjct: 62  RATDALAVFQEM------LGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVL 115

Query: 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372
           DV  YS L+D     GR   A ++F +++  GC+PDT  YN LI+   K  KV+EAL L 
Sbjct: 116 DVFTYSYLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELL 175

Query: 373 GEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432
            +M   G+ PD                         +N ++D L    R   A+  F  +
Sbjct: 176 EDMNRKGIMPD----------------------CRTYNIVIDVLSSCGRYEKAYSFFGMM 213

Query: 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPD 492
            R    P+VVTY  ++ GL                 +K+R   +A +L  +M      PD
Sbjct: 214 KRRKHSPDVVTYNTLLNGL-----------------KKLRRTDEACDLFDEMQANKCMPD 256

Query: 493 EITVSILEELLNK 505
             T   L + L K
Sbjct: 257 LTTFGTLIDTLAK 269



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 126/281 (44%), Gaps = 20/281 (7%)

Query: 80  HMQPTPFMPS---FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMI 136
           +MQ    MP    +N L+  L  +      + L E +N  G++PD  + NI+++      
Sbjct: 142 NMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCG 201

Query: 137 GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNV 196
               A+   G + R+  SPDVVT   L+ GL    +  EA  LF +  A  C    +P++
Sbjct: 202 RYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKC----MPDL 257

Query: 197 ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSA 256
             + ++ID L K G +         +   G  P++++YN+LI  +C         G    
Sbjct: 258 TTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFC-------RSGQVDK 310

Query: 257 ALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV 316
             EL ++ +  +      C PD ++Y  ++    +      A EL  +M   G  P +  
Sbjct: 311 GYELFQDMIECS------CFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALAT 364

Query: 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
           Y+ LI    + G+++DA  LF  + ++G  PD  +Y+ L N
Sbjct: 365 YNVLIRSLSMAGQVEDAYTLFKEMIAKGFNPDMQTYSALPN 405



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 87/206 (42%), Gaps = 40/206 (19%)

Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG-CIPDTSSYNTLINSYSKIEKVEEALS 370
           PDVV Y++LI GYC  G  D A  +F  ++ EG C P+  S++TL+    K+ +  +AL+
Sbjct: 9   PDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALA 68

Query: 371 LYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430
           ++ EM+  G++ D                      + V N L+   C+   LR A  L  
Sbjct: 69  VFQEMLGAGLQAD----------------------VNVCNTLIHCTCRLGMLRQARRLLH 106

Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVK 490
            +  +    +V TY+ ++                 D   K     KA+E+   M K    
Sbjct: 107 HMTAHAFVLDVFTYSYLM-----------------DALGKAGRAAKALEVFSNMQKAGCM 149

Query: 491 PDEITVSILEELLNKDENCHECMNLL 516
           PD +  ++L   L K     E + LL
Sbjct: 150 PDTVVYNVLISCLGKQGKVDEALELL 175



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 102/258 (39%), Gaps = 79/258 (30%)

Query: 341 ESEGCIPDTSSYNTLINSY------------------------------------SKIEK 364
           E+  C PD  +YNTLI  Y                                     K+ +
Sbjct: 3   ETCDCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSR 62

Query: 365 VEEALSLYGEMISMGVRPD-NSC------------ILEAAELFRTLHNTKFELDLTVFNC 411
             +AL+++ EM+  G++ D N C            + +A  L   +    F LD+  ++ 
Sbjct: 63  ATDALAVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSY 122

Query: 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK- 470
           L+D L K+ R   A E+F  + + G  P+ V Y V+I  L  +G +++A +LL DM  K 
Sbjct: 123 LMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKG 182

Query: 471 -IRECL----------------KAIELLHKMAKRYVKPDEITVSI----LEELLNKDENC 509
            + +C                 KA      M +R   PD +T +     L++L   DE C
Sbjct: 183 IMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEAC 242

Query: 510 --------HECMNLLPSF 519
                   ++CM  L +F
Sbjct: 243 DLFDEMQANKCMPDLTTF 260



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 4/169 (2%)

Query: 69  NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
           ++A   F+ M   +  P + +F +L+  LA      + +  S RL  +G +P+    N L
Sbjct: 239 DEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNAL 298

Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
           ++ FC+   V   +     ++     PD +T   L+ G   +G  + A  L  + V    
Sbjct: 299 ISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMV---- 354

Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
           R    P +  Y  +I  L   G V     LF +M  +G  PD   Y++L
Sbjct: 355 REGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFNPDMQTYSAL 403


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.322    0.138    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,192,351,326
Number of Sequences: 23463169
Number of extensions: 344601477
Number of successful extensions: 1114190
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6388
Number of HSP's successfully gapped in prelim test: 5103
Number of HSP's that attempted gapping in prelim test: 886180
Number of HSP's gapped (non-prelim): 68433
length of query: 531
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 384
effective length of database: 8,910,109,524
effective search space: 3421482057216
effective search space used: 3421482057216
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)