BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038190
(531 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EVV|A Chain A, Crystal Structure Of The Pebp-like Protein Of Unknown
Function Hp0218 From Helicobacter Pylori
pdb|2EVV|B Chain B, Crystal Structure Of The Pebp-like Protein Of Unknown
Function Hp0218 From Helicobacter Pylori
pdb|2EVV|C Chain C, Crystal Structure Of The Pebp-like Protein Of Unknown
Function Hp0218 From Helicobacter Pylori
pdb|2EVV|D Chain D, Crystal Structure Of The Pebp-like Protein Of Unknown
Function Hp0218 From Helicobacter Pylori
Length = 207
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 219 FLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALEL 260
+LD K G P AF+ ++ + Y ++W+ +G S ALEL
Sbjct: 37 YLDAKFGGNAPKAFLNSNGLPTYSPKISWQKVEGAQSYALEL 78
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467
A+++ K++ +G +P + +Y + G C +G +KAY++ M
Sbjct: 124 AFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166
>pdb|3AB4|A Chain A, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|C Chain C, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|E Chain E, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|G Chain G, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|I Chain I, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|K Chain K, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|M Chain M, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|O Chain O, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
Length = 421
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 18/120 (15%)
Query: 389 EAAELFRTLHNTKFELDLTVFNC--LVDG------LCKSWRLRSAWELFKKLPRYGPEPN 440
EAA++FR L + + +D+ + N + DG C R A E+ KKL G N
Sbjct: 278 EAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTN 337
Query: 441 VVTYTVMICGLCIEG-GIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
V+ Y + + + G G++ + + E +R+ IEL + EI +S+L
Sbjct: 338 VL-YDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIEL--------ISTSEIRISVL 388
>pdb|3AAW|A Chain A, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Lysine And Threonine
pdb|3AAW|C Chain C, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Lysine And Threonine
pdb|3AB2|A Chain A, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|C Chain C, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|E Chain E, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|G Chain G, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|I Chain I, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|K Chain K, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|M Chain M, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|O Chain O, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
Length = 421
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 18/120 (15%)
Query: 389 EAAELFRTLHNTKFELDLTVFNC--LVDG------LCKSWRLRSAWELFKKLPRYGPEPN 440
EAA++FR L + + +D+ + N + DG C R A E+ KKL G N
Sbjct: 278 EAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTN 337
Query: 441 VVTYTVMICGLCIEG-GIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
V+ Y + + + G G++ + + E +R+ IEL + EI +S+L
Sbjct: 338 VL-YDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIEL--------ISTSEIRISVL 388
>pdb|3AB4|B Chain B, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|D Chain D, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|F Chain F, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|H Chain H, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|J Chain J, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|L Chain L, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|N Chain N, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|P Chain P, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
Length = 178
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 18/120 (15%)
Query: 389 EAAELFRTLHNTKFELDLTVFNC--LVDG------LCKSWRLRSAWELFKKLPRYGPEPN 440
EAA++FR L + + +D+ + N + DG C R A E+ KKL G N
Sbjct: 29 EAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTN 88
Query: 441 VVTYTVMICGLCIEG-GIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
V+ Y + + + G G++ + + E +R+ IEL + EI +S+L
Sbjct: 89 VL-YDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIEL--------ISTSEIRISVL 139
>pdb|2DTJ|A Chain A, Crystal Structure Of Regulatory Subunit Of Aspartate
Kinase From Corynebacterium Glutamicum
pdb|2DTJ|B Chain B, Crystal Structure Of Regulatory Subunit Of Aspartate
Kinase From Corynebacterium Glutamicum
pdb|3AAW|B Chain B, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Lysine And Threonine
pdb|3AAW|D Chain D, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Lysine And Threonine
pdb|3AB2|B Chain B, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|D Chain D, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|F Chain F, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|H Chain H, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|J Chain J, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|L Chain L, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|N Chain N, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|P Chain P, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
Length = 178
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 18/120 (15%)
Query: 389 EAAELFRTLHNTKFELDLTVFNC--LVDG------LCKSWRLRSAWELFKKLPRYGPEPN 440
EAA++FR L + + +D+ + N + DG C R A E+ KKL G N
Sbjct: 29 EAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTN 88
Query: 441 VVTYTVMICGLCIEG-GIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
V+ Y + + + G G++ + + E +R+ IEL + EI +S+L
Sbjct: 89 VL-YDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIEL--------ISTSEIRISVL 139
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
A++ K+ +G +P + +Y + G C +G +KAY++
Sbjct: 124 AFDXVKQXKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162
>pdb|3FFS|A Chain A, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|B Chain B, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|C Chain C, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|D Chain D, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
Length = 400
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVK 490
K+P + VT +M G+ GGI + + DME ++ E LK + + K
Sbjct: 42 KIPLISSAMDTVTEHLMAVGMARLGGIGIIHKNM-DMESQVNEVLKVKNWISNLEKNEST 100
Query: 491 PDE 493
PD+
Sbjct: 101 PDQ 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,592,928
Number of Sequences: 62578
Number of extensions: 652042
Number of successful extensions: 1755
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1749
Number of HSP's gapped (non-prelim): 16
length of query: 531
length of database: 14,973,337
effective HSP length: 103
effective length of query: 428
effective length of database: 8,527,803
effective search space: 3649899684
effective search space used: 3649899684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)